Query 003193
Match_columns 840
No_of_seqs 762 out of 4097
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 16:40:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003193.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003193hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.4E-36 1.8E-40 355.7 31.0 514 207-773 97-717 (768)
2 3vq2_A TLR4, TOLL-like recepto 100.0 2.1E-34 7.1E-39 334.6 35.8 510 197-773 19-558 (606)
3 1ziw_A TOLL-like receptor 3; i 100.0 2.7E-34 9.3E-39 338.3 34.6 533 198-773 13-622 (680)
4 3vq2_A TLR4, TOLL-like recepto 100.0 2.3E-34 8E-39 334.2 31.8 476 207-746 53-556 (606)
5 3t6q_A CD180 antigen; protein- 100.0 9.6E-34 3.3E-38 329.1 31.5 525 197-782 20-565 (606)
6 3rgz_A Protein brassinosteroid 100.0 2.9E-34 1E-38 340.7 27.5 527 209-791 177-763 (768)
7 1ziw_A TOLL-like receptor 3; i 100.0 5.2E-33 1.8E-37 327.3 36.4 509 213-776 7-599 (680)
8 3t6q_A CD180 antigen; protein- 100.0 1.8E-33 6E-38 326.8 30.4 469 207-746 54-558 (606)
9 2z63_A TOLL-like receptor 4, v 100.0 4E-32 1.4E-36 313.3 30.1 487 197-773 15-531 (570)
10 2z81_A CD282 antigen, TOLL-lik 100.0 6E-32 2E-36 310.1 25.0 475 217-773 12-510 (549)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-30 5.3E-35 312.1 32.3 494 196-773 11-560 (844)
12 2z63_A TOLL-like receptor 4, v 100.0 3.6E-30 1.2E-34 296.9 31.6 475 212-776 9-509 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-30 3.8E-35 299.6 24.3 463 199-746 15-508 (549)
14 3j0a_A TOLL-like receptor 5; m 100.0 3.5E-30 1.2E-34 308.9 29.7 491 213-771 7-537 (844)
15 2z7x_B TOLL-like receptor 1, v 100.0 1.9E-29 6.6E-34 286.9 25.4 454 213-773 3-481 (520)
16 4eco_A Uncharacterized protein 100.0 7.6E-30 2.6E-34 295.6 21.0 361 248-687 198-598 (636)
17 4ecn_A Leucine-rich repeat pro 100.0 3.7E-29 1.3E-33 294.0 24.5 401 210-692 323-842 (876)
18 4g8a_A TOLL-like receptor 4; l 100.0 7.8E-28 2.7E-32 281.5 35.5 518 197-782 39-585 (635)
19 4eco_A Uncharacterized protein 100.0 4.6E-29 1.6E-33 289.1 22.2 447 232-774 81-633 (636)
20 4ecn_A Leucine-rich repeat pro 100.0 4.6E-29 1.6E-33 293.2 21.4 426 232-751 323-842 (876)
21 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-27 4.1E-32 272.2 21.7 435 199-713 10-479 (520)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.8E-27 1.3E-31 270.2 26.0 461 212-773 33-510 (562)
23 4g8a_A TOLL-like receptor 4; l 99.9 3E-26 1E-30 268.0 31.1 497 214-771 35-553 (635)
24 1o6v_A Internalin A; bacterial 99.9 6.2E-26 2.1E-30 253.6 26.9 299 207-568 43-341 (466)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-25 3.8E-30 258.0 23.2 440 197-713 39-508 (562)
26 3bz5_A Internalin-J, INLJ; leu 99.9 2E-24 6.8E-29 239.1 28.7 165 208-394 40-204 (457)
27 3v47_A TOLL-like receptor 5B a 99.9 3.5E-25 1.2E-29 247.4 22.6 174 214-396 14-195 (455)
28 1jl5_A Outer protein YOPM; leu 99.9 5.5E-25 1.9E-29 243.4 23.4 404 209-773 10-429 (454)
29 1jl5_A Outer protein YOPM; leu 99.9 8.4E-26 2.9E-30 249.9 16.7 151 226-398 5-170 (454)
30 2a5y_B CED-4; apoptosis; HET: 99.9 1.3E-26 4.5E-31 262.6 8.0 174 6-191 284-472 (549)
31 4fmz_A Internalin; leucine ric 99.9 6.2E-24 2.1E-28 228.0 25.6 304 207-606 41-344 (347)
32 3o6n_A APL1; leucine-rich repe 99.9 5E-24 1.7E-28 232.6 25.1 305 229-606 42-350 (390)
33 3v47_A TOLL-like receptor 5B a 99.9 1.5E-24 5E-29 242.3 19.0 375 197-609 18-409 (455)
34 1o6v_A Internalin A; bacterial 99.9 1.4E-23 4.7E-28 234.6 25.9 327 202-606 59-386 (466)
35 3bz5_A Internalin-J, INLJ; leu 99.9 1.7E-23 5.7E-28 231.7 23.6 314 230-691 40-353 (457)
36 4fmz_A Internalin; leucine ric 99.9 3.9E-23 1.3E-27 221.8 24.7 287 201-569 56-344 (347)
37 2id5_A Lingo-1, leucine rich r 99.9 6.9E-23 2.4E-27 230.0 26.7 289 233-569 33-331 (477)
38 3oja_B Anopheles plasmodium-re 99.9 3.8E-23 1.3E-27 238.2 24.8 305 229-606 48-356 (597)
39 2id5_A Lingo-1, leucine rich r 99.9 1.2E-22 4.2E-27 228.0 28.1 314 235-687 14-331 (477)
40 3o6n_A APL1; leucine-rich repe 99.9 2.5E-23 8.5E-28 227.0 21.3 302 208-569 43-350 (390)
41 3oja_B Anopheles plasmodium-re 99.9 4E-22 1.4E-26 229.6 20.2 303 208-570 49-357 (597)
42 2ft3_A Biglycan; proteoglycan, 99.9 8.4E-22 2.9E-26 209.7 20.8 237 233-510 34-273 (332)
43 1xku_A Decorin; proteoglycan, 99.9 4.3E-21 1.5E-25 204.1 23.3 154 233-398 32-188 (330)
44 3ogk_B Coronatine-insensitive 99.9 2.9E-23 9.8E-28 240.3 3.6 152 230-390 71-252 (592)
45 1ogq_A PGIP-2, polygalacturona 99.9 2.2E-21 7.4E-26 204.1 16.2 245 210-515 50-305 (313)
46 4fcg_A Uncharacterized protein 99.9 5E-21 1.7E-25 202.5 17.9 220 208-484 79-311 (328)
47 4fcg_A Uncharacterized protein 99.9 6.5E-21 2.2E-25 201.6 17.2 107 255-362 79-195 (328)
48 2ft3_A Biglycan; proteoglycan, 99.8 2.4E-20 8.3E-25 198.3 19.8 237 211-485 34-275 (332)
49 1xku_A Decorin; proteoglycan, 99.8 8.6E-20 2.9E-24 194.0 20.3 277 201-511 43-329 (330)
50 2z80_A TOLL-like receptor 2, v 99.8 4.5E-20 1.6E-24 198.1 17.4 191 215-414 36-233 (353)
51 3ogk_B Coronatine-insensitive 99.8 8.9E-22 3E-26 227.7 4.3 409 230-745 110-548 (592)
52 2z66_A Variable lymphocyte rec 99.8 6.1E-20 2.1E-24 192.9 16.9 174 213-396 10-190 (306)
53 1ozn_A Reticulon 4 receptor; N 99.8 1.8E-19 6.2E-24 187.1 19.5 192 198-398 20-218 (285)
54 3zyi_A Leucine-rich repeat-con 99.8 1.6E-19 5.4E-24 200.8 19.7 174 212-396 56-233 (452)
55 3zyj_A Leucine-rich repeat-con 99.8 1.7E-19 5.7E-24 199.8 19.7 174 212-396 45-222 (440)
56 2z80_A TOLL-like receptor 2, v 99.8 3.2E-19 1.1E-23 191.5 21.3 280 230-570 29-313 (353)
57 2p1m_B Transport inhibitor res 99.8 1.1E-21 3.7E-26 227.2 2.0 130 230-360 103-245 (594)
58 1z7x_W Ribonuclease inhibitor; 99.8 4.8E-22 1.6E-26 222.4 -1.5 158 232-393 3-182 (461)
59 1ogq_A PGIP-2, polygalacturona 99.8 5E-20 1.7E-24 193.7 12.5 152 232-394 50-210 (313)
60 2p1m_B Transport inhibitor res 99.8 1.3E-21 4.3E-26 226.7 0.1 130 253-391 101-245 (594)
61 1ozn_A Reticulon 4 receptor; N 99.8 9E-19 3.1E-23 181.9 19.5 175 212-396 13-192 (285)
62 3zyj_A Leucine-rich repeat-con 99.8 1.4E-18 4.8E-23 192.4 18.4 234 196-485 50-290 (440)
63 3g06_A SSPH2 (leucine-rich rep 99.8 6.8E-18 2.3E-22 192.1 23.6 256 210-543 40-295 (622)
64 3zyi_A Leucine-rich repeat-con 99.8 2E-18 6.9E-23 191.8 18.7 233 197-485 62-301 (452)
65 2z66_A Variable lymphocyte rec 99.8 2.8E-18 9.7E-23 180.2 17.4 229 197-435 15-260 (306)
66 3g06_A SSPH2 (leucine-rich rep 99.8 1.7E-17 5.7E-22 188.9 24.2 245 199-485 50-295 (622)
67 3sfz_A APAF-1, apoptotic pepti 99.8 1.2E-18 4E-23 220.0 14.3 172 4-191 274-453 (1249)
68 2o6q_A Variable lymphocyte rec 99.7 4.1E-17 1.4E-21 167.6 20.5 191 210-410 16-212 (270)
69 2o6q_A Variable lymphocyte rec 99.7 4E-17 1.4E-21 167.7 19.8 188 198-394 25-218 (270)
70 1p9a_G Platelet glycoprotein I 99.7 2.4E-17 8.1E-22 170.8 17.7 192 208-410 8-202 (290)
71 1z7x_W Ribonuclease inhibitor; 99.7 1.5E-19 5.1E-24 202.1 1.2 150 211-362 4-182 (461)
72 1wwl_A Monocyte differentiatio 99.7 1.4E-18 4.8E-23 182.7 8.3 180 212-398 65-270 (312)
73 3o53_A Protein LRIM1, AGAP0063 99.7 2.6E-19 9E-24 188.7 2.7 246 230-517 32-278 (317)
74 1vt4_I APAF-1 related killer D 99.7 2.7E-18 9.2E-23 196.4 9.5 144 8-184 285-437 (1221)
75 3o53_A Protein LRIM1, AGAP0063 99.7 7E-19 2.4E-23 185.5 3.7 289 234-573 12-301 (317)
76 1h6u_A Internalin H; cell adhe 99.7 1.2E-16 4.2E-21 167.3 19.7 191 207-414 38-228 (308)
77 2z62_A TOLL-like receptor 4, v 99.7 4.9E-17 1.7E-21 167.9 15.6 203 199-411 17-232 (276)
78 2z62_A TOLL-like receptor 4, v 99.7 7.7E-17 2.6E-21 166.4 17.0 176 214-397 11-193 (276)
79 1wwl_A Monocyte differentiatio 99.7 2.4E-18 8.2E-23 180.9 5.6 154 230-394 41-214 (312)
80 3rfs_A Internalin B, repeat mo 99.7 1.6E-16 5.5E-21 163.3 18.7 176 207-393 38-217 (272)
81 1p9a_G Platelet glycoprotein I 99.7 9.6E-17 3.3E-21 166.2 16.3 158 230-399 8-166 (290)
82 2xwt_C Thyrotropin receptor; s 99.7 5E-17 1.7E-21 163.7 13.7 199 201-410 23-233 (239)
83 3m19_A Variable lymphocyte rec 99.7 3.5E-16 1.2E-20 158.7 18.5 175 211-395 15-193 (251)
84 3oja_A Leucine-rich immune mol 99.7 7.4E-18 2.5E-22 188.1 6.2 239 232-512 34-273 (487)
85 1h6u_A Internalin H; cell adhe 99.7 3.2E-16 1.1E-20 164.1 16.3 201 220-459 29-229 (308)
86 2xwt_C Thyrotropin receptor; s 99.7 1.8E-16 6.2E-21 159.6 12.8 165 221-397 22-196 (239)
87 1h6t_A Internalin B; cell adhe 99.7 7.9E-16 2.7E-20 159.5 16.6 174 207-397 43-216 (291)
88 3oja_A Leucine-rich immune mol 99.7 9.5E-17 3.2E-21 179.2 9.8 231 209-482 33-270 (487)
89 3m19_A Variable lymphocyte rec 99.7 1.6E-15 5.4E-20 153.9 18.0 165 197-363 22-192 (251)
90 3rfs_A Internalin B, repeat mo 99.6 6.8E-15 2.3E-19 151.1 18.2 171 207-393 60-234 (272)
91 1z6t_A APAF-1, apoptotic prote 99.6 9.7E-16 3.3E-20 176.4 12.8 164 8-187 276-449 (591)
92 4glp_A Monocyte differentiatio 99.6 6.4E-16 2.2E-20 162.3 10.1 163 231-398 90-268 (310)
93 4ay9_X Follicle-stimulating ho 99.6 2.9E-15 9.9E-20 160.1 14.8 191 199-397 19-218 (350)
94 1h6t_A Internalin B; cell adhe 99.6 6.7E-15 2.3E-19 152.5 16.7 181 217-414 31-211 (291)
95 3e6j_A Variable lymphocyte rec 99.6 9.3E-15 3.2E-19 145.6 17.0 149 212-363 21-172 (229)
96 2v70_A SLIT-2, SLIT homolog 2 99.6 6.3E-15 2.2E-19 145.8 14.8 149 213-363 14-166 (220)
97 4ay9_X Follicle-stimulating ho 99.6 6.2E-15 2.1E-19 157.5 14.9 120 235-359 12-137 (350)
98 1m9s_A Internalin B; cell inva 99.6 6.6E-15 2.3E-19 167.4 15.4 174 207-397 40-213 (605)
99 2ast_B S-phase kinase-associat 99.6 3.1E-16 1.1E-20 167.0 4.1 121 211-335 48-178 (336)
100 2o6s_A Variable lymphocyte rec 99.6 1E-14 3.5E-19 143.3 14.6 165 213-394 10-178 (208)
101 2v9t_B SLIT homolog 2 protein 99.6 1.2E-14 4.3E-19 143.6 14.8 147 213-362 14-164 (220)
102 4glp_A Monocyte differentiatio 99.6 7E-15 2.4E-19 154.3 13.4 191 209-411 90-302 (310)
103 4ezg_A Putative uncharacterize 99.6 1.5E-14 5.2E-19 140.5 13.5 147 208-361 42-192 (197)
104 1xeu_A Internalin C; cellular 99.6 4E-15 1.4E-19 151.6 9.8 170 209-396 18-187 (263)
105 4ezg_A Putative uncharacterize 99.6 1.4E-14 4.8E-19 140.8 13.0 151 230-395 42-195 (197)
106 2ast_B S-phase kinase-associat 99.6 2.7E-15 9.1E-20 159.8 8.2 175 210-392 70-258 (336)
107 2ca6_A RAN GTPase-activating p 99.6 8.3E-16 2.8E-20 167.0 3.5 183 208-394 30-257 (386)
108 1m9s_A Internalin B; cell inva 99.5 8.9E-15 3.1E-19 166.3 10.8 185 213-414 24-208 (605)
109 2o6s_A Variable lymphocyte rec 99.5 3.7E-14 1.3E-18 139.3 12.6 161 198-367 16-182 (208)
110 2xot_A Amphoterin-induced prot 99.5 2.2E-14 7.7E-19 153.8 11.3 172 213-394 21-202 (361)
111 2v9t_B SLIT homolog 2 protein 99.5 8.7E-14 3E-18 137.5 14.4 147 235-393 14-164 (220)
112 3cvr_A Invasion plasmid antige 99.5 1.8E-13 6.2E-18 153.7 17.8 176 210-410 59-237 (571)
113 1xeu_A Internalin C; cellular 99.5 1E-13 3.5E-18 141.1 14.3 148 207-363 38-185 (263)
114 2xot_A Amphoterin-induced prot 99.5 6.3E-14 2.2E-18 150.3 13.0 154 235-397 21-179 (361)
115 2v70_A SLIT-2, SLIT homolog 2 99.5 1.5E-13 5E-18 135.9 14.5 148 235-394 14-166 (220)
116 3e6j_A Variable lymphocyte rec 99.5 2.6E-13 9E-18 135.1 15.3 148 234-394 21-172 (229)
117 3goz_A Leucine-rich repeat-con 99.5 2E-14 6.7E-19 154.5 6.6 154 208-363 20-209 (362)
118 3cvr_A Invasion plasmid antige 99.5 5.1E-13 1.8E-17 150.0 17.4 168 200-395 70-244 (571)
119 2ell_A Acidic leucine-rich nuc 99.5 2.8E-13 9.7E-18 127.8 12.3 138 256-398 23-164 (168)
120 3goz_A Leucine-rich repeat-con 99.5 1.1E-14 3.8E-19 156.4 2.4 107 255-362 20-150 (362)
121 2ca6_A RAN GTPase-activating p 99.5 1.1E-14 3.9E-19 158.0 2.1 167 223-393 22-228 (386)
122 2ell_A Acidic leucine-rich nuc 99.4 3.3E-13 1.1E-17 127.4 11.6 132 208-343 22-164 (168)
123 2je0_A Acidic leucine-rich nuc 99.4 1.9E-13 6.4E-18 126.2 8.5 102 254-357 39-147 (149)
124 2wfh_A SLIT homolog 2 protein 99.4 1.7E-12 5.8E-17 125.2 13.9 122 236-362 14-138 (193)
125 1dce_A Protein (RAB geranylger 99.4 2.6E-15 8.8E-20 169.8 -7.6 190 209-408 348-565 (567)
126 2je0_A Acidic leucine-rich nuc 99.4 8.4E-13 2.9E-17 121.8 9.6 124 208-334 15-149 (149)
127 1w8a_A SLIT protein; signaling 99.4 2.1E-12 7.1E-17 124.6 12.5 104 258-362 30-138 (192)
128 1w8a_A SLIT protein; signaling 99.4 3.1E-12 1.1E-16 123.3 12.7 125 260-394 11-139 (192)
129 1a9n_A U2A', U2A'; complex (nu 99.4 5.2E-13 1.8E-17 127.0 6.4 101 258-360 43-150 (176)
130 4b8c_D Glucose-repressible alc 99.4 8.8E-13 3E-17 154.0 9.5 153 209-365 172-331 (727)
131 2wfh_A SLIT homolog 2 protein 99.3 1E-11 3.6E-16 119.6 13.5 124 260-393 13-138 (193)
132 1a9n_A U2A', U2A'; complex (nu 99.3 2.6E-12 8.8E-17 122.2 8.6 125 208-335 17-150 (176)
133 4b8c_D Glucose-repressible alc 99.3 5.6E-13 1.9E-17 155.7 3.6 131 230-363 222-354 (727)
134 2o6r_A Variable lymphocyte rec 99.3 3.2E-11 1.1E-15 114.7 14.1 105 257-362 28-136 (177)
135 2o6r_A Variable lymphocyte rec 99.3 3.2E-11 1.1E-15 114.7 13.6 123 212-336 9-135 (177)
136 1ds9_A Outer arm dynein; leuci 99.3 1.2E-13 4.2E-18 134.2 -4.6 132 253-387 44-180 (198)
137 1dce_A Protein (RAB geranylger 99.2 2.1E-11 7.3E-16 137.7 12.2 123 258-388 442-567 (567)
138 2r9u_A Variable lymphocyte rec 99.2 7.9E-11 2.7E-15 111.2 11.8 101 260-363 15-118 (174)
139 3g39_A Variable lymphocyte rec 99.2 9.7E-11 3.3E-15 110.3 11.8 102 259-363 11-115 (170)
140 1ds9_A Outer arm dynein; leuci 99.1 1.1E-12 3.8E-17 127.4 -4.5 142 211-356 24-180 (198)
141 2r9u_A Variable lymphocyte rec 99.1 5.8E-10 2E-14 105.2 11.3 102 236-342 16-121 (174)
142 3g39_A Variable lymphocyte rec 99.0 1.4E-09 4.8E-14 102.2 11.3 95 236-334 13-111 (170)
143 3sb4_A Hypothetical leucine ri 99.0 1.4E-09 4.9E-14 114.7 10.2 15 209-223 48-62 (329)
144 3sb4_A Hypothetical leucine ri 98.9 5.3E-09 1.8E-13 110.3 10.1 104 207-311 22-157 (329)
145 2ifg_A High affinity nerve gro 98.8 1.3E-08 4.4E-13 108.3 10.9 99 261-362 12-115 (347)
146 4fdw_A Leucine rich hypothetic 98.7 1.8E-07 6.1E-12 100.8 16.0 256 210-510 113-379 (401)
147 3un9_A NLR family member X1; l 98.7 3.2E-09 1.1E-13 113.3 0.9 156 207-363 69-252 (372)
148 4fdw_A Leucine rich hypothetic 98.7 1.1E-06 3.7E-11 94.6 20.4 142 231-389 112-256 (401)
149 2ifg_A High affinity nerve gro 98.6 5.9E-08 2E-12 103.2 10.2 99 237-339 13-116 (347)
150 3un9_A NLR family member X1; l 98.6 2.6E-09 8.8E-14 114.0 -2.3 161 231-395 71-253 (372)
151 3e4g_A ATP synthase subunit S, 98.4 1.2E-07 4E-12 87.5 3.7 89 649-750 62-154 (176)
152 4fs7_A Uncharacterized protein 98.3 1.1E-05 3.8E-10 87.0 17.7 123 230-359 69-194 (394)
153 3e4g_A ATP synthase subunit S, 98.3 1.1E-07 3.9E-12 87.6 1.5 93 676-775 61-154 (176)
154 4fs7_A Uncharacterized protein 98.2 2.2E-05 7.5E-10 84.7 16.6 301 208-567 69-375 (394)
155 2ra8_A Uncharacterized protein 98.1 1.1E-06 3.9E-11 92.6 3.9 159 230-393 137-319 (362)
156 1io0_A Tropomodulin; LRR prote 98.0 3.8E-06 1.3E-10 79.7 4.2 109 253-362 32-163 (185)
157 3rw6_A Nuclear RNA export fact 97.8 2.6E-05 8.8E-10 77.8 6.6 78 254-331 167-257 (267)
158 2ra8_A Uncharacterized protein 97.8 1.1E-05 3.7E-10 85.1 4.0 128 230-363 170-320 (362)
159 1io0_A Tropomodulin; LRR prote 97.7 1.5E-05 5.3E-10 75.4 4.0 105 231-335 35-161 (185)
160 3rw6_A Nuclear RNA export fact 97.6 1.1E-05 3.8E-10 80.4 0.4 79 277-356 167-257 (267)
161 4gt6_A Cell surface protein; l 97.5 0.0037 1.3E-07 67.0 19.1 120 233-359 65-191 (394)
162 4gt6_A Cell surface protein; l 97.3 0.023 7.9E-07 60.8 21.7 110 247-360 53-170 (394)
163 4h09_A Hypothetical leucine ri 96.4 0.14 4.8E-06 54.2 19.2 122 230-360 44-168 (379)
164 4h09_A Hypothetical leucine ri 95.3 0.087 3E-06 55.9 11.6 103 253-359 213-319 (379)
165 3rfe_A Platelet glycoprotein I 94.8 0.041 1.4E-06 47.9 6.0 54 306-362 12-67 (130)
166 3rfe_A Platelet glycoprotein I 94.7 0.047 1.6E-06 47.6 6.0 14 259-272 33-46 (130)
167 1pgv_A TMD-1, tropomodulin TMD 94.1 0.036 1.2E-06 51.9 4.1 81 254-334 38-135 (197)
168 1w5s_A Origin recognition comp 92.3 0.69 2.4E-05 49.4 11.5 151 10-179 210-387 (412)
169 1pgv_A TMD-1, tropomodulin TMD 91.9 0.12 4.1E-06 48.3 4.2 81 254-334 67-166 (197)
170 2fna_A Conserved hypothetical 89.8 0.83 2.8E-05 47.5 8.9 146 8-182 202-355 (357)
171 1hqc_A RUVB; extended AAA-ATPa 80.5 1.9 6.6E-05 44.0 5.9 69 7-76 160-237 (324)
172 2qen_A Walker-type ATPase; unk 76.6 3.7 0.00013 42.3 6.7 148 8-182 196-347 (350)
173 1njg_A DNA polymerase III subu 64.9 8.2 0.00028 36.9 5.8 54 8-62 178-231 (250)
174 2qby_B CDC6 homolog 3, cell di 44.3 88 0.003 32.2 10.1 134 9-166 191-338 (384)
175 2v1u_A Cell division control p 40.1 86 0.003 32.1 9.2 136 8-166 194-350 (387)
176 2vda_B Maltoporin; sugar trans 23.1 36 0.0012 18.9 1.2 19 47-65 7-25 (28)
177 2chg_A Replication factor C sm 21.5 98 0.0034 28.4 5.1 53 9-62 155-207 (226)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.4e-36 Score=355.65 Aligned_cols=514 Identities=16% Similarity=0.050 Sum_probs=291.3
Q ss_pred hccCCCcEEEeccCCcc-cCCc--cc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-Chh---hcC
Q 003193 207 KIDEAPTAISIPFRGIY-ELPE--RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSS---LGC 278 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~-~l~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~---l~~ 278 (840)
....++++|++++|.+. .+|. .+ .+++|++|++++|.+.+.+|..++.++++|++|++++|.++.. |.. +.+
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 176 (768)
T 3rgz_A 97 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176 (768)
T ss_dssp CCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred ccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence 34567888888888774 3454 33 6788888888888777677766667778888888888877644 333 667
Q ss_pred CCCCCEEEccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEcc
Q 003193 279 LINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG 358 (840)
Q Consensus 279 l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~ 358 (840)
+++|++|++++|.+.....++++++|++|++++|.++..++.++++++|++|++++|.....+|.. ++++++|++|+++
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNIS 255 (768)
T ss_dssp CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECC
T ss_pred CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECC
Confidence 777777777777776644447777777777777777654434777777777777774333344443 6777777777777
Q ss_pred CCcccceecCCCCCCcccccCCCCCCeEEEecCCCC-CCCCcc-c-ccCcceEEEEEcC----ccCCCCCccccceEEEe
Q 003193 359 NSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ-VMPQDL-V-FVELERFRICIGD----VWSWSDGYETSKTLKLQ 431 (840)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~-~~~~~~-~-~~~L~~L~l~~~~----~~~~~~~~~~l~~L~l~ 431 (840)
+|.+....+ .. .+++|+.|++++|.+. .+|..+ . +++|+.|++..+. .+..+..+++|+.|+++
T Consensus 256 ~n~l~~~~~--------~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 256 SNQFVGPIP--------PL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326 (768)
T ss_dssp SSCCEESCC--------CC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC
T ss_pred CCcccCccC--------cc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECC
Confidence 776543221 11 4555666666655544 344433 1 2555555554332 23334445555555555
Q ss_pred eCCCc-cchhhHHHHHhcccceeeccccccccccccccchhhcc-cccEEEeecCCCeEEEE------------------
Q 003193 432 LNNST-YLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFA-RLRHLHVHNGPEILHIL------------------ 491 (840)
Q Consensus 432 ~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~-~L~~L~l~~~~~l~~~~------------------ 491 (840)
.+... .+|......+++|+.|++++|.....++..+ ..++ +|++|++++|.....++
T Consensus 327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL---TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH---HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHH---HhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence 54443 3343322234555555555554433344333 3333 44555544443111110
Q ss_pred -----eCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEe
Q 003193 492 -----NSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVT 566 (840)
Q Consensus 492 -----~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~ 566 (840)
........+++|++|+++++.--..++ ...+.+++|+.|++++|.-...+| ..+..+++|++|+++
T Consensus 404 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-------~~l~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP-------SSLGSLSKLRDLKLWLNMLEGEIP--QELMYVKTLETLILD 474 (768)
T ss_dssp SEEEEECCGGGGGCTTCCEEECCSSEEESCCC-------GGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECC
T ss_pred CccccccCHHHhcCCCCCEEECcCCcccCccc-------HHHhcCCCCCEEECCCCcccCcCC--HHHcCCCCceEEEec
Confidence 011223444555555555532111111 113345556666665554222332 123455666666666
Q ss_pred cccccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccc
Q 003193 567 DCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVV 646 (840)
Q Consensus 567 ~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 646 (840)
+|.-...++ ..+..+++|++|++.++.-...++.. .....+++.+....+.-....+..+..
T Consensus 475 ~N~l~~~~p-------------~~l~~l~~L~~L~L~~N~l~~~~p~~-----~~~l~~L~~L~L~~N~l~~~~p~~l~~ 536 (768)
T 3rgz_A 475 FNDLTGEIP-------------SGLSNCTNLNWISLSNNRLTGEIPKW-----IGRLENLAILKLSNNSFSGNIPAELGD 536 (768)
T ss_dssp SSCCCSCCC-------------GGGGGCTTCCEEECCSSCCCSCCCGG-----GGGCTTCCEEECCSSCCEEECCGGGGG
T ss_pred CCcccCcCC-------------HHHhcCCCCCEEEccCCccCCcCChH-----HhcCCCCCEEECCCCcccCcCCHHHcC
Confidence 554332222 23456777777777777544343332 234556777777776655566666777
Q ss_pred cCCcceEecccccch-hhcccC----------------------------------------------------------
Q 003193 647 FPSLKKLKLSSINVE-KIWLNS---------------------------------------------------------- 667 (840)
Q Consensus 647 l~~L~~L~l~~c~l~-~~~~~~---------------------------------------------------------- 667 (840)
+++|+.|++++|.++ .+|...
T Consensus 537 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 616 (768)
T 3rgz_A 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616 (768)
T ss_dssp CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTT
T ss_pred CCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccc
Confidence 888888888887554 222110
Q ss_pred -------CccccccCCCceEEEecccCCcc-eeechhhHhhhcccceeeecccccchhhhccCcccccCccccccccccc
Q 003193 668 -------FSAIESWGKNLTKLTVEKCGRLK-FLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVS 739 (840)
Q Consensus 668 -------~~~~~~~l~~L~~L~i~~C~~L~-~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~ 739 (840)
.+.....+++|+.|+++++ +++ .+| ..++++++|+.|+++++.--..+ |+.+.. +++|+.
T Consensus 617 ~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~ip--~~l~~l~~L~~L~Ls~N~l~g~i---p~~l~~------L~~L~~ 684 (768)
T 3rgz_A 617 SRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIP--KEIGSMPYLFILNLGHNDISGSI---PDEVGD------LRGLNI 684 (768)
T ss_dssp SCEEEEECCCSCSSSBCCCEEECCSS-CCBSCCC--GGGGGCTTCCEEECCSSCCCSCC---CGGGGG------CTTCCE
T ss_pred cceecccCchhhhccccccEEECcCC-cccccCC--HHHhccccCCEEeCcCCccCCCC---ChHHhC------CCCCCE
Confidence 0111234567788888665 444 443 33777888888888886533344 665554 778888
Q ss_pred cccccCCcceeecCCCCccCCCcceEEeccCCCc
Q 003193 740 LQLSHLPKLTRFGIGDSVEFPSLCQLQIACCPNL 773 (840)
Q Consensus 740 L~i~~c~~L~~l~~~~~~~l~sL~~L~i~~C~~L 773 (840)
|+++++.--..+|. .+.++++|++|++++|+--
T Consensus 685 LdLs~N~l~g~ip~-~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 685 LDLSSNKLDGRIPQ-AMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp EECCSSCCEECCCG-GGGGCCCCSEEECCSSEEE
T ss_pred EECCCCcccCcCCh-HHhCCCCCCEEECcCCccc
Confidence 88887753334443 3446778888888877533
No 2
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.1e-34 Score=334.64 Aligned_cols=510 Identities=18% Similarity=0.167 Sum_probs=358.4
Q ss_pred cCccchhhhhhccCCCcEEEeccCCcccCCc-cc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-C
Q 003193 197 NVADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-P 273 (840)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p 273 (840)
.+..+..+|...++++++|++++|.+..++. .+ ++++|++|++++|.+.. +++..|.++++|++|++++|.++.+ |
T Consensus 19 ~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~p 97 (606)
T 3vq2_A 19 MDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSP 97 (606)
T ss_dssp TTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCCCCT
T ss_pred cCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc-cCHHHhhchhhcCEeECCCCcccccCh
Confidence 4456777777778899999999999977765 33 78999999999988774 4444458899999999999999877 7
Q ss_pred hhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCc--ccChhhcCCCCCCEEEccCCCCCCccCcccccCC
Q 003193 274 SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIE--QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNL 349 (840)
Q Consensus 274 ~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L 349 (840)
..|+++++|++|++++|.+.. +..++++++|++|++++|.++ .+|..++++++|++|++++ +.+..+++..++.+
T Consensus 98 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l 176 (606)
T 3vq2_A 98 GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY-NYIQTITVNDLQFL 176 (606)
T ss_dssp TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS-SCCCEECTTTTHHH
T ss_pred hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC-CcceecChhhhhhh
Confidence 889999999999999999887 467999999999999999887 4788899999999999998 56777766556666
Q ss_pred CCCc----EEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCC--CCCCcc-cccCcceEEEEEcCccC-----
Q 003193 350 TRLE----ELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ--VMPQDL-VFVELERFRICIGDVWS----- 417 (840)
Q Consensus 350 ~~L~----~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~--~~~~~~-~~~~L~~L~l~~~~~~~----- 417 (840)
++|+ +|++++|.+....+ ..+. ..+|+.|++++|... ..+..+ .+++|+.+.+..+....
T Consensus 177 ~~L~~~l~~L~l~~n~l~~~~~-------~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~ 248 (606)
T 3vq2_A 177 RENPQVNLSLDMSLNPIDFIQD-------QAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248 (606)
T ss_dssp HHCTTCCCEEECTTCCCCEECT-------TTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred hccccccceeeccCCCcceeCc-------cccc-CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence 6655 79999887653222 1222 237889999988654 122222 55666666665443211
Q ss_pred -----CCCCcc--ccceEEEee-CCCccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEE
Q 003193 418 -----WSDGYE--TSKTLKLQL-NNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILH 489 (840)
Q Consensus 418 -----~~~~~~--~l~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~ 489 (840)
...... .++.+.+.. +........ ...+++|+.|++.++.. +.++ .+ ..+++|++|++++|.. ..
T Consensus 249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~-~~l~-~l---~~~~~L~~L~l~~n~l-~~ 321 (606)
T 3vq2_A 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSI-KYLE-DV---PKHFKWQSLSIIRCQL-KQ 321 (606)
T ss_dssp CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCC-CCCC-CC---CTTCCCSEEEEESCCC-SS
T ss_pred ccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccc-hhhh-hc---cccccCCEEEcccccC-cc
Confidence 111111 233333322 222221111 23467888898888765 3444 44 6788999999998873 33
Q ss_pred EEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCccccc-chhHHhhcccccEEEEecc
Q 003193 490 ILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLF-PFSLVKNLLQLQKVKVTDC 568 (840)
Q Consensus 490 ~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~-~~~~~~~l~~L~~L~i~~c 568 (840)
++ .. .+++|++|++.++..+..+ + ...+++|+.|+++++ .++... ....+..+++|++|++++|
T Consensus 322 lp----~~-~l~~L~~L~l~~n~~~~~~-----~----~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n 386 (606)
T 3vq2_A 322 FP----TL-DLPFLKSLTLTMNKGSISF-----K----KVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFN 386 (606)
T ss_dssp CC----CC-CCSSCCEEEEESCSSCEEC-----C----CCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSC
T ss_pred cc----cC-CCCccceeeccCCcCccch-----h----hccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCC
Confidence 32 23 7888999999887554433 2 457889999999886 344442 1134578899999999987
Q ss_pred cccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccC
Q 003193 569 TNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFP 648 (840)
Q Consensus 569 ~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~ 648 (840)
. +..++. .+..+++|+.|++.++.-....+. .......+++.+....+.-....+..+..++
T Consensus 387 ~-l~~~~~-------------~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 387 G-AIIMSA-------------NFMGLEELQHLDFQHSTLKRVTEF----SAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp S-EEEECC-------------CCTTCTTCCEEECTTSEEESTTTT----TTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred c-cccchh-------------hccCCCCCCeeECCCCccCCccCh----hhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence 6 444431 345788899999988754333221 1233556777777777765555556677899
Q ss_pred CcceEecccccchh-hcccCCccccccCCCceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCccccc
Q 003193 649 SLKKLKLSSINVEK-IWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDD 727 (840)
Q Consensus 649 ~L~~L~l~~c~l~~-~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~ 727 (840)
+|++|++++|.++. +.... .+.+++|+.|++++| +++.+++ ..+.++++|++|++++|. +..+. |..+..
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~--~~~~~~ 519 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNV----FANTTNLTFLDLSKC-QLEQISW-GVFDTLHRLQLLNMSHNN-LLFLD--SSHYNQ 519 (606)
T ss_dssp TCCEEECTTCEEGGGEECSC----CTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCEE--GGGTTT
T ss_pred CCCEEECCCCcCCCcchHHh----hccCCCCCEEECCCC-cCCccCh-hhhcccccCCEEECCCCc-CCCcC--HHHccC
Confidence 99999999998775 22233 357799999999887 6776644 457889999999999975 44442 555544
Q ss_pred CccccccccccccccccCCcceeecCCCCccCC-CcceEEeccCCCc
Q 003193 728 NMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFP-SLCQLQIACCPNL 773 (840)
Q Consensus 728 ~~~~~~l~sL~~L~i~~c~~L~~l~~~~~~~l~-sL~~L~i~~C~~L 773 (840)
+++|+.|++++|. ++.+|.. +..++ +|++|++.++|-.
T Consensus 520 ------l~~L~~L~l~~N~-l~~~p~~-~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 520 ------LYSLSTLDCSFNR-IETSKGI-LQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp ------CTTCCEEECTTSC-CCCEESC-GGGSCTTCCEEECCSCCCC
T ss_pred ------CCcCCEEECCCCc-CcccCHh-HhhhcccCcEEEccCCCcc
Confidence 8999999999995 8889875 55676 6999999998765
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.7e-34 Score=338.27 Aligned_cols=533 Identities=16% Similarity=0.121 Sum_probs=323.3
Q ss_pred CccchhhhhhccCCCcEEEeccCCcccCCcc-c-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-
Q 003193 198 VADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS- 274 (840)
Q Consensus 198 ~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~- 274 (840)
+..+..+|...+.++++|++++|.+..++.. + .+++|++|++++|.+....| ..|.++++|++|++++|.++.+|+
T Consensus 13 ~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~ 91 (680)
T 1ziw_A 13 HLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLSDK 91 (680)
T ss_dssp SSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSCCCCCCTT
T ss_pred CCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCCccCccChh
Confidence 4456667776778999999999999888764 3 78999999999998875444 456889999999999999999886
Q ss_pred hhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCccc-ChhhcCCCCCCEEEccCCCCCCccCccccc--CC
Q 003193 275 SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVIS--NL 349 (840)
Q Consensus 275 ~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~p~~~l~--~L 349 (840)
.|+++++|++|++++|.+.. +..++++++|++|++++|.++.. |..++++++|++|++++ +.+..+++..++ .+
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN-NKIQALKSEELDIFAN 170 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS-SCCCCBCHHHHGGGTT
T ss_pred hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC-CcccccCHHHhhcccc
Confidence 59999999999999999888 46799999999999999988865 45688999999999999 567777765443 56
Q ss_pred CCCcEEEccCCcccceecCCCCCCccccc------------------------CCCCCCeEEEecCCCCCCCCc-c-cc-
Q 003193 350 TRLEELYMGNSFTQWKVEGQSNASLGELK------------------------QLSRLTTLEVHIPDAQVMPQD-L-VF- 402 (840)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~l~~l~------------------------~l~~L~~L~l~~~~~~~~~~~-~-~~- 402 (840)
++|++|++++|.+....+. .+..+. ..++|+.|+++++.+...+.. + .+
T Consensus 171 ~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~ 246 (680)
T 1ziw_A 171 SSLKKLELSSNQIKEFSPG----CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246 (680)
T ss_dssp CEESEEECTTCCCCCBCTT----GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG
T ss_pred ccccEEECCCCcccccChh----hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccC
Confidence 8999999999876533221 111111 125677777777766544332 2 22
Q ss_pred -cCcceEEEEEcCc----cCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeeccccccc-----cccc----ccc
Q 003193 403 -VELERFRICIGDV----WSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFK-----NVVH----ELD 468 (840)
Q Consensus 403 -~~L~~L~l~~~~~----~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-----~~~~----~l~ 468 (840)
++|+.|++..+.. +.++..+++++.|+++++.....+......+++|+.|++.++.... .++. .+
T Consensus 247 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~- 325 (680)
T 1ziw_A 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF- 325 (680)
T ss_dssp GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTT-
T ss_pred cCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhc-
Confidence 3477777765442 2345666777888877766555443323335677777776543211 1111 22
Q ss_pred chhhcccccEEEeecCCCeEEEEeCCCccccccccceeeccccc-ccccccccccc--------------------cCCC
Q 003193 469 DEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLI-NLEKVCDGKVR--------------------LNED 527 (840)
Q Consensus 469 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~-~L~~~~~~~~~--------------------~~~~ 527 (840)
..+++|++|++++|.- ..+. ......+++|++|+++++. .+..++...+. .+..
T Consensus 326 --~~l~~L~~L~l~~n~l-~~~~--~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~ 400 (680)
T 1ziw_A 326 --QWLKCLEHLNMEDNDI-PGIK--SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400 (680)
T ss_dssp --TTCTTCCEEECCSCCB-CCCC--TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT
T ss_pred --ccCCCCCEEECCCCcc-CCCC--hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh
Confidence 4567777777776641 1111 1223556667777766542 11111111110 0011
Q ss_pred CcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCcc
Q 003193 528 DKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQ 607 (840)
Q Consensus 528 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~ 607 (840)
...+++|+.|+++++.-...+++ ..+..+++|++|++++|. +..+.. ..+..+|+|+.|++.++.-
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~~~~L~~L~l~~n~l 466 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTG-QEWRGLENIFEIYLSYNK-YLQLTR------------NSFALVPSLQRLMLRRVAL 466 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCS-GGGTTCTTCCEEECCSCS-EEECCT------------TTTTTCTTCCEEECTTSCC
T ss_pred hhCCCCCCEEeCCCCcCccccCc-ccccCcccccEEecCCCC-cceeCh------------hhhhcCcccccchhccccc
Confidence 22344555555554432222221 223445555555555543 111111 1233556666666655431
Q ss_pred --cccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecccccchhhcccCCcc----ccccCCCceEE
Q 003193 608 --LTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSA----IESWGKNLTKL 681 (840)
Q Consensus 608 --L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~----~~~~l~~L~~L 681 (840)
+..++. ......+++.+....+.-.......+..+++|++|++++|.++.++...++. ....+++|+.|
T Consensus 467 ~~~~~~p~-----~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 467 KNVDSSPS-----PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp BCTTCSSC-----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred cccccCCc-----ccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 111111 1223445555555444322222233456777888888887777765543321 13566778888
Q ss_pred EecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccCccccccccccccccccCCcceeecCCCCc-cCC
Q 003193 682 TVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDSV-EFP 760 (840)
Q Consensus 682 ~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~~~~~~-~l~ 760 (840)
+++++ +++.+|. ..+.++++|+.|++++ +.++.+ |.+.... +++|+.|+++++ +++.++...+. .++
T Consensus 542 ~L~~N-~l~~i~~-~~~~~l~~L~~L~Ls~-N~l~~l---~~~~~~~-----l~~L~~L~L~~N-~l~~~~~~~~~~~~~ 609 (680)
T 1ziw_A 542 NLESN-GFDEIPV-EVFKDLFELKIIDLGL-NNLNTL---PASVFNN-----QVSLKSLNLQKN-LITSVEKKVFGPAFR 609 (680)
T ss_dssp ECCSS-CCCCCCT-TTTTTCTTCCEEECCS-SCCCCC---CTTTTTT-----CTTCCEEECTTS-CCCBCCHHHHHHHHT
T ss_pred ECCCC-CCCCCCH-HHcccccCcceeECCC-CCCCcC---CHhHhCC-----CCCCCEEECCCC-cCCccChhHhccccc
Confidence 88554 5666643 3467777888888876 446655 4433211 677888888777 56666543222 467
Q ss_pred CcceEEeccCCCc
Q 003193 761 SLCQLQIACCPNL 773 (840)
Q Consensus 761 sL~~L~i~~C~~L 773 (840)
+|+.|++.++|-.
T Consensus 610 ~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 610 NLTELDMRFNPFD 622 (680)
T ss_dssp TCSEEECTTCCCC
T ss_pred ccCEEEccCCCcc
Confidence 7888888877654
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.3e-34 Score=334.21 Aligned_cols=476 Identities=18% Similarity=0.149 Sum_probs=288.4
Q ss_pred hccCCCcEEEeccCCcccCCc-cc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-hhhcCCCCCC
Q 003193 207 KIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLR 283 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~ 283 (840)
....++++|++++|.+..++. .+ .+++|++|++++|.+....|.. |.++++|++|++++|.++.+| ..++++++|+
T Consensus 53 ~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 131 (606)
T 3vq2_A 53 SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS-FSGLTSLENLVAVETKLASLESFPIGQLITLK 131 (606)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS-STTCTTCCEEECTTSCCCCSSSSCCTTCTTCC
T ss_pred cCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh-cCCcccCCEEEccCCccccccccccCCCCCCC
Confidence 467899999999999987754 33 7999999999999987554554 599999999999999999876 7799999999
Q ss_pred EEEccCCccCC---cccccCCCCCCEEeecCCCCcccC-hhhcCCCCCC----EEEccCCCCCCccCcccccCCCCCcEE
Q 003193 284 TLSLENCLVVD---VAIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLK----LLDLSNCSKLKEIRPNVISNLTRLEEL 355 (840)
Q Consensus 284 ~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~----~L~L~~~~~l~~~p~~~l~~L~~L~~L 355 (840)
+|++++|.+.. |..++++++|++|++++|.++.++ ..++.+++|+ +|++++ +.+..+++..+. ..+|++|
T Consensus 132 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~-n~l~~~~~~~~~-~~~L~~L 209 (606)
T 3vq2_A 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL-NPIDFIQDQAFQ-GIKLHEL 209 (606)
T ss_dssp EEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT-CCCCEECTTTTT-TCEEEEE
T ss_pred EEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC-CCcceeCccccc-Cceeeee
Confidence 99999999874 788999999999999999999774 4566666655 899999 678888887544 4499999
Q ss_pred EccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCC-----ccccc-----CcceEEEEEcC-----ccCCCC
Q 003193 356 YMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQ-----DLVFV-----ELERFRICIGD-----VWSWSD 420 (840)
Q Consensus 356 ~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~-----~~~~~-----~L~~L~l~~~~-----~~~~~~ 420 (840)
++++|.+... .....+.++++|+.+++..+....... ...+. .++.+.+.... .+. +.
T Consensus 210 ~L~~n~~~~~------~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~ 282 (606)
T 3vq2_A 210 TLRGNFNSSN------IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FH 282 (606)
T ss_dssp EEESCCSCHH------HHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CG
T ss_pred eccCCccchh------HHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cc
Confidence 9999865421 112445666667666665433221100 00111 12222221110 111 33
Q ss_pred CccccceEEEeeCCCccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccc
Q 003193 421 GYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTF 500 (840)
Q Consensus 421 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 500 (840)
.+.+++.+++.++....+| ++.. +++|+.|++++|.. +.++ .+ .+++|++|++++|.....+ ....+
T Consensus 283 ~l~~L~~L~l~~~~~~~l~-~l~~-~~~L~~L~l~~n~l-~~lp-~~----~l~~L~~L~l~~n~~~~~~-----~~~~l 349 (606)
T 3vq2_A 283 CLANVSAMSLAGVSIKYLE-DVPK-HFKWQSLSIIRCQL-KQFP-TL----DLPFLKSLTLTMNKGSISF-----KKVAL 349 (606)
T ss_dssp GGTTCSEEEEESCCCCCCC-CCCT-TCCCSEEEEESCCC-SSCC-CC----CCSSCCEEEEESCSSCEEC-----CCCCC
T ss_pred cCCCCCEEEecCccchhhh-hccc-cccCCEEEcccccC-cccc-cC----CCCccceeeccCCcCccch-----hhccC
Confidence 3445555555554444443 2211 34555555555543 3333 11 3455555555555433221 22345
Q ss_pred cccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccc
Q 003193 501 PLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESE 580 (840)
Q Consensus 501 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 580 (840)
++|++|+++++ .+....... .....+++|+.|++++|. ++.++ ..+..+++|++|++++|.-....+.
T Consensus 350 ~~L~~L~ls~n-~l~~~~~~~----~~~~~~~~L~~L~L~~n~-l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~---- 417 (606)
T 3vq2_A 350 PSLSYLDLSRN-ALSFSGCCS----YSDLGTNSLRHLDLSFNG-AIIMS--ANFMGLEELQHLDFQHSTLKRVTEF---- 417 (606)
T ss_dssp TTCCEEECCSS-CEEEEEECC----HHHHCCSCCCEEECCSCS-EEEEC--CCCTTCTTCCEEECTTSEEESTTTT----
T ss_pred CCCCEEECcCC-ccCCCcchh----hhhccCCcccEeECCCCc-cccch--hhccCCCCCCeeECCCCccCCccCh----
Confidence 55555555543 222211000 002334555555555543 33332 2234455555555555432211110
Q ss_pred cccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcc-cccccccccCCcceEeccccc
Q 003193 581 NSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFT-SLFNERVVFPSLKKLKLSSIN 659 (840)
Q Consensus 581 ~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~l~~L~~L~l~~c~ 659 (840)
..+..+++|++|++++|.-....+.. .....+++.+....+.-.. ..+..+..+++|++|++++|.
T Consensus 418 --------~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 484 (606)
T 3vq2_A 418 --------SAFLSLEKLLYLDISYTNTKIDFDGI-----FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484 (606)
T ss_dssp --------TTTTTCTTCCEEECTTSCCEECCTTT-----TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred --------hhhhccccCCEEECcCCCCCccchhh-----hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc
Confidence 02224455555555554322211111 1223344444444433222 123445678999999999998
Q ss_pred chhhcccCCccccccCCCceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccCccccccc-ccc
Q 003193 660 VEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFP-KLV 738 (840)
Q Consensus 660 l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~-sL~ 738 (840)
++.++...+ ..+++|++|++++| +++.+.+ ..+.++++|++|++++|. ++.+ |.++.. ++ +|+
T Consensus 485 l~~~~~~~~----~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~---p~~~~~------l~~~L~ 548 (606)
T 3vq2_A 485 LEQISWGVF----DTLHRLQLLNMSHN-NLLFLDS-SHYNQLYSLSTLDCSFNR-IETS---KGILQH------FPKSLA 548 (606)
T ss_dssp CCEECTTTT----TTCTTCCEEECCSS-CCSCEEG-GGTTTCTTCCEEECTTSC-CCCE---ESCGGG------SCTTCC
T ss_pred CCccChhhh----cccccCCEEECCCC-cCCCcCH-HHccCCCcCCEEECCCCc-Cccc---CHhHhh------hcccCc
Confidence 887765544 57799999999888 5676644 457889999999999975 7766 665544 66 699
Q ss_pred ccccccCC
Q 003193 739 SLQLSHLP 746 (840)
Q Consensus 739 ~L~i~~c~ 746 (840)
.|+++++|
T Consensus 549 ~l~l~~N~ 556 (606)
T 3vq2_A 549 FFNLTNNS 556 (606)
T ss_dssp EEECCSCC
T ss_pred EEEccCCC
Confidence 99999987
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.6e-34 Score=329.05 Aligned_cols=525 Identities=14% Similarity=0.107 Sum_probs=331.8
Q ss_pred cCccchhhhhhccCCCcEEEeccCCcccCCc-cc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-C
Q 003193 197 NVADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-P 273 (840)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p 273 (840)
.+..+..+|...+..+++|++++|.+..++. .+ .+++|++|++++|.+....|.. |.++++|++|++++|.++.+ |
T Consensus 20 ~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~ 98 (606)
T 3t6q_A 20 ENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT-FQSQHRLDTLVLTANPLIFMAE 98 (606)
T ss_dssp TTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCSEECT
T ss_pred CCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhh-ccCccccCeeeCCCCcccccCh
Confidence 3445667777778889999999998877743 33 7889999999988877544444 58899999999999988765 7
Q ss_pred hhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcccC-hhhcCCCCCCEEEccCCCCCCccCcccccCCC
Q 003193 274 SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350 (840)
Q Consensus 274 ~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~ 350 (840)
..++++++|++|++++|.+.. +..++++++|++|++++|.++.++ ..+..+++|++|++++ +.+..+++..++.++
T Consensus 99 ~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~ 177 (606)
T 3t6q_A 99 TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-NAIHYLSKEDMSSLQ 177 (606)
T ss_dssp TTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS-SCCCEECHHHHHTTT
T ss_pred hhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc-CcccccChhhhhhhc
Confidence 788899999999999998888 577889999999999999888763 3344588999999988 577777766688888
Q ss_pred CCc--EEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcc-cccCcceEEEEEcCccC---------C
Q 003193 351 RLE--ELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRICIGDVWS---------W 418 (840)
Q Consensus 351 ~L~--~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~---------~ 418 (840)
+|+ +|++++|.+....+ .. -...+|+.|+++++.. .+... .+.++....+..+.... .
T Consensus 178 ~L~~l~L~l~~n~l~~~~~-------~~-~~~~~L~~L~l~~~~~--~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~ 247 (606)
T 3t6q_A 178 QATNLSLNLNGNDIAGIEP-------GA-FDSAVFQSLNFGGTQN--LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247 (606)
T ss_dssp TCCSEEEECTTCCCCEECT-------TT-TTTCEEEEEECTTCSC--HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred ccceeEEecCCCccCccCh-------hH-hhhccccccccCCchh--HHHHhhhccccchhheechhhccccccccChhH
Confidence 888 88888887654332 11 2234677787776541 11110 12222222221111000 0
Q ss_pred CCCc--cccceEEEeeCCCccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCc
Q 003193 419 SDGY--ETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGR 496 (840)
Q Consensus 419 ~~~~--~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 496 (840)
+... ..++.++++.+.....+......+++|+.|+++++.. +.+|..+ ..+++|++|++++|.-. .+. ...
T Consensus 248 ~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~lp~~l---~~l~~L~~L~l~~n~l~-~~~--~~~ 320 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGL---VGLSTLKKLVLSANKFE-NLC--QIS 320 (606)
T ss_dssp GGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC-SCCCSSC---CSCTTCCEEECTTCCCS-BGG--GGC
T ss_pred hchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc-CCCChhh---cccccCCEEECccCCcC-cCc--hhh
Confidence 1111 1456666666655555544333456777777777643 3455555 55677777777776521 110 123
Q ss_pred cccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccc-hhHHhhcccccEEEEecccccceee
Q 003193 497 VGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFP-FSLVKNLLQLQKVKVTDCTNLKLIV 575 (840)
Q Consensus 497 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~-~~~~~~l~~L~~L~i~~c~~l~~~~ 575 (840)
...+++|++|++.++.....++.+. ...+++|++|+++++. ++.... ...+..+++|++|++++|.- ..+.
T Consensus 321 ~~~l~~L~~L~l~~n~~~~~~~~~~------~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~ 392 (606)
T 3t6q_A 321 ASNFPSLTHLSIKGNTKRLELGTGC------LENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEP-LSLK 392 (606)
T ss_dssp GGGCTTCSEEECCSCSSCCBCCSST------TTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSC-EEEC
T ss_pred hhccCcCCEEECCCCCcccccchhh------hhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcC-CcCC
Confidence 3566777777777654322332211 3456777777777653 333320 12345667777777776643 2221
Q ss_pred ccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEec
Q 003193 576 GKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKL 655 (840)
Q Consensus 576 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l 655 (840)
. ..+..+++|++|++.++.--...+.. ......+++.+....+.-....+..+..+++|++|++
T Consensus 393 ~------------~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 456 (606)
T 3t6q_A 393 T------------EAFKECPQLELLDLAFTRLKVKDAQS----PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456 (606)
T ss_dssp T------------TTTTTCTTCSEEECTTCCEECCTTCC----TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred H------------HHhcCCccCCeEECCCCcCCCcccch----hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEEC
Confidence 1 13335677777777766432221111 1223455666666555443334445567899999999
Q ss_pred ccccchhhcccCCccccccCCCceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccCccccccc
Q 003193 656 SSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFP 735 (840)
Q Consensus 656 ~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~ 735 (840)
++|.++...... ......+++|+.|++++| +++.+++ ..+..+++|++|++++|. +..+. |+.+.. ++
T Consensus 457 ~~n~l~~~~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~------l~ 524 (606)
T 3t6q_A 457 QGNHFPKGNIQK-TNSLQTLGRLEILVLSFC-DLSSIDQ-HAFTSLKMMNHVDLSHNR-LTSSS--IEALSH------LK 524 (606)
T ss_dssp TTCBCGGGEECS-SCGGGGCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CCGGG--GGGGTT------CC
T ss_pred CCCCCCcccccc-chhhccCCCccEEECCCC-ccCccCh-hhhccccCCCEEECCCCc-cCcCC--hhHhCc------cc
Confidence 999776532111 111357799999999887 5777644 447889999999999975 44442 555544 78
Q ss_pred cccccccccCCcceeecCCCCccCCCcceEEeccCCCcceeeccccc
Q 003193 736 KLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIACCPNLKIFICSCTE 782 (840)
Q Consensus 736 sL~~L~i~~c~~L~~l~~~~~~~l~sL~~L~i~~C~~L~~l~~~~~~ 782 (840)
+| .|+++++. ++.++...+..+++|+.|++.++|-- |+|+.
T Consensus 525 ~L-~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~----c~c~~ 565 (606)
T 3t6q_A 525 GI-YLNLASNH-ISIILPSLLPILSQQRTINLRQNPLD----CTCSN 565 (606)
T ss_dssp SC-EEECCSSC-CCCCCGGGHHHHHTSSEEECTTCCEE----CSGGG
T ss_pred cc-EEECcCCc-ccccCHhhcccCCCCCEEeCCCCCcc----ccCCc
Confidence 88 89999984 66666544457899999999999843 56654
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.9e-34 Score=340.75 Aligned_cols=527 Identities=16% Similarity=0.099 Sum_probs=335.8
Q ss_pred cCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCC-CCChhhcCCCCCCEEEc
Q 003193 209 DEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCLINLRTLSL 287 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~l~~l~~L~~L~L 287 (840)
..++++|++++|.+........+++|++|++++|.+.+.+|. +.++++|++|++++|.++ .+|..++++++|++|++
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 254 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254 (768)
T ss_dssp CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEEC
Confidence 455666666666654433334667777777777776655554 467777777777777776 45666777777777777
Q ss_pred cCCccCC-cccccCCCCCCEEeecCCCCc-ccChhhcCC-CCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccc
Q 003193 288 ENCLVVD-VAIIGDLKKLEILSLKHSSIE-QLPREIGQL-TCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQW 364 (840)
Q Consensus 288 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L-~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~ 364 (840)
++|.+.. .+.. .+++|++|++++|.++ .+|..+..+ ++|++|++++|.....+|.. ++++++|++|++++|.+..
T Consensus 255 s~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~ 332 (768)
T 3rgz_A 255 SSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSG 332 (768)
T ss_dssp CSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEE
T ss_pred CCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccC
Confidence 7777655 2222 6777777777777766 677776664 77888888774333344444 7778888888887776543
Q ss_pred eecCCCCCCcccccCCCCCCeEEEecCCCC-CCCCcc-ccc-CcceEEEEEcC----ccCCCCC--ccccceEEEeeCCC
Q 003193 365 KVEGQSNASLGELKQLSRLTTLEVHIPDAQ-VMPQDL-VFV-ELERFRICIGD----VWSWSDG--YETSKTLKLQLNNS 435 (840)
Q Consensus 365 ~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~-~L~~L~l~~~~----~~~~~~~--~~~l~~L~l~~~~~ 435 (840)
.++ ...+.++++|+.|+++.|.+. .+|..+ .+. +|+.|++..+. .+.+... .++++.|+++.+..
T Consensus 333 ~ip------~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 333 ELP------MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp ECC------HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred cCC------HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence 222 123677888888888887765 555554 444 78888876543 2333333 66788888888766
Q ss_pred c-cchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeeccccccc
Q 003193 436 T-YLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINL 514 (840)
Q Consensus 436 ~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L 514 (840)
. ..|.++.. +++|+.|++++|......+..+ +.+++|+.|++++|.....+ ......+++|++|+++++.--
T Consensus 407 ~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~~---p~~~~~l~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 407 TGKIPPTLSN-CSELVSLHLSFNYLSGTIPSSL---GSLSKLRDLKLWLNMLEGEI---PQELMYVKTLETLILDFNDLT 479 (768)
T ss_dssp EEECCGGGGG-CTTCCEEECCSSEEESCCCGGG---GGCTTCCEEECCSSCCCSCC---CGGGGGCTTCCEEECCSSCCC
T ss_pred ccccCHHHhc-CCCCCEEECcCCcccCcccHHH---hcCCCCCEEECCCCcccCcC---CHHHcCCCCceEEEecCCccc
Confidence 5 44554443 6788999998887666667666 77889999999888632222 223467888999999886432
Q ss_pred ccccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccc
Q 003193 515 EKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYF 594 (840)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l 594 (840)
..++ .....+++|+.|++++|.-...+| ..+..+++|++|++++|.-...++. .+..+
T Consensus 480 ~~~p-------~~l~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~-------------~l~~l 537 (768)
T 3rgz_A 480 GEIP-------SGLSNCTNLNWISLSNNRLTGEIP--KWIGRLENLAILKLSNNSFSGNIPA-------------ELGDC 537 (768)
T ss_dssp SCCC-------GGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCEEECCG-------------GGGGC
T ss_pred CcCC-------HHHhcCCCCCEEEccCCccCCcCC--hHHhcCCCCCEEECCCCcccCcCCH-------------HHcCC
Confidence 2222 124578999999999876443443 3457889999999999876555543 45688
Q ss_pred cccceeecccCcccccccCCCCCCCccCCCCC-----------------------------------cccc------cCC
Q 003193 595 RKLHFLKLQHLPQLTSSGFDLETPTNTQGSNP-----------------------------------GIIA------EGD 633 (840)
Q Consensus 595 ~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l-----------------------------------~~l~------~~~ 633 (840)
++|+.|++.+++-...+|.............. ..+. ...
T Consensus 538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 617 (768)
T 3rgz_A 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617 (768)
T ss_dssp TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence 99999999998765565543211000000000 0000 000
Q ss_pred CCCcccccccccccCCcceEecccccchhhcccCCccccccCCCceEEEecccCCcceeechhhHhhhcccceeeecccc
Q 003193 634 PKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCK 713 (840)
Q Consensus 634 ~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~ 713 (840)
..-....+.....+++|+.|++++|.++..... ..+.+++|+.|+++++.--..+| ..+.++++|+.|+++++.
T Consensus 618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~----~l~~l~~L~~L~Ls~N~l~g~ip--~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK----EIGSMPYLFILNLGHNDISGSIP--DEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG----GGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSC
T ss_pred ceecccCchhhhccccccEEECcCCcccccCCH----HHhccccCCEEeCcCCccCCCCC--hHHhCCCCCCEEECCCCc
Confidence 000001122345678999999999988743222 24678999999997774333554 348899999999999976
Q ss_pred cchhhhccCcccccCccccccccccccccccCCcceeecCCCCccCCCcceEEeccCCCcceee-----ccccccccccc
Q 003193 714 SMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIACCPNLKIFI-----CSCTEEMSSEK 788 (840)
Q Consensus 714 ~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~~~~~~~l~sL~~L~i~~C~~L~~l~-----~~~~~~~~~~~ 788 (840)
--..+ |+.+.. +++|+.|++++++--..+|.++ .+.++....+.++|.|--.| ...+++|+.++
T Consensus 692 l~g~i---p~~l~~------l~~L~~L~ls~N~l~g~iP~~~--~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~ 760 (768)
T 3rgz_A 692 LDGRI---PQAMSA------LTMLTEIDLSNNNLSGPIPEMG--QFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQ 760 (768)
T ss_dssp CEECC---CGGGGG------CCCCSEEECCSSEEEEECCSSS--SGGGSCGGGGCSCTEEESTTSCCCCSCC--------
T ss_pred ccCcC---ChHHhC------CCCCCEEECcCCcccccCCCch--hhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCC
Confidence 44455 666655 8999999999997666777654 46777777788888764332 23335799999
Q ss_pred ccc
Q 003193 789 NIH 791 (840)
Q Consensus 789 ~i~ 791 (840)
|+|
T Consensus 761 ~~~ 763 (768)
T 3rgz_A 761 RSH 763 (768)
T ss_dssp ---
T ss_pred Ccc
Confidence 988
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.2e-33 Score=327.34 Aligned_cols=509 Identities=16% Similarity=0.110 Sum_probs=294.7
Q ss_pred cEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCc
Q 003193 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL 291 (840)
Q Consensus 213 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~ 291 (840)
+.++.+++++..+|..+. +++++|++++|.+. .++...|.++++|++|++++|.++.+ |..++++++|++|++++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 467888888888987664 79999999999877 46666679999999999999999876 7789999999999999999
Q ss_pred cCC-cc-cccCCCCCCEEeecCCCCcccC-hhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecC
Q 003193 292 VVD-VA-IIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG 368 (840)
Q Consensus 292 ~~~-~~-~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 368 (840)
+.. |. .++++++|++|++++|+++.+| ..++++++|++|++++ +.+...++..++++++|++|++++|.+....+
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~- 162 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH-NGLSSTKLGTQVQLENLQELLLSNNKIQALKS- 162 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCS-SCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH-
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCC-CcccccCchhhcccccCCEEEccCCcccccCH-
Confidence 988 44 6999999999999999999887 5799999999999999 46666666668999999999999987653221
Q ss_pred CCCCCcccc--cCCCCCCeEEEecCCCCCCCCcc--cccCcceEEEEEcCccCC-------CCCccccceEEEeeCCCcc
Q 003193 369 QSNASLGEL--KQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGDVWSW-------SDGYETSKTLKLQLNNSTY 437 (840)
Q Consensus 369 ~~~~~l~~l--~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~-------~~~~~~l~~L~l~~~~~~~ 437 (840)
..+ ..+++|+.|++++|.+...+... .+.+|+.+.+........ ......++.|+++++....
T Consensus 163 ------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~ 236 (680)
T 1ziw_A 163 ------EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236 (680)
T ss_dssp ------HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE
T ss_pred ------HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc
Confidence 222 24578999999998877655432 344444444321110000 0011344444444433332
Q ss_pred ch-hhHHHHHh--cccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccc--------------
Q 003193 438 LG-YGMKMLLK--RTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTF-------------- 500 (840)
Q Consensus 438 ~~-~~~~~~l~--~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~-------------- 500 (840)
.+ .++.. ++ +|+.|++++|......+..+ +.+++|++|++++|.- ..+. ......+
T Consensus 237 ~~~~~~~~-l~~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~l-~~~~--~~~~~~l~~L~~L~L~~~~~~ 309 (680)
T 1ziw_A 237 TSNTTFLG-LKWTNLTMLDLSYNNLNVVGNDSF---AWLPQLEYFFLEYNNI-QHLF--SHSLHGLFNVRYLNLKRSFTK 309 (680)
T ss_dssp ECTTTTGG-GGGSCCCEEECTTSCCCEECTTTT---TTCTTCCEEECCSCCB-SEEC--TTTTTTCTTCCEEECTTCBCC
T ss_pred cChhHhhc-cCcCCCCEEECCCCCcCccCcccc---cCcccccEeeCCCCcc-CccC--hhhhcCCCCccEEeccchhhh
Confidence 21 11111 22 25555555444332222233 3445555555554431 1111 1122334
Q ss_pred -------------------cccceeecccccccccccccccccCCCCcccCCccEEEEecCC-CcccccchhHHhh--cc
Q 003193 501 -------------------PLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCH-RVKHLFPFSLVKN--LL 558 (840)
Q Consensus 501 -------------------~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~-~L~~l~~~~~~~~--l~ 558 (840)
++|++|+++++ .+..+... ....+++|++|++++|. .+..++... +.. .+
T Consensus 310 ~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~------~~~~l~~L~~L~Ls~n~~~~~~l~~~~-f~~~~~~ 381 (680)
T 1ziw_A 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSN------MFTGLINLKYLSLSNSFTSLRTLTNET-FVSLAHS 381 (680)
T ss_dssp C------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTT------TTTTCTTCCEEECTTCBSCCCEECTTT-TGGGTTS
T ss_pred cccccccccccChhhcccCCCCCEEECCCC-ccCCCChh------HhccccCCcEEECCCCchhhhhcchhh-hcccccC
Confidence 44444444442 12221111 12234445555544432 111111100 000 12
Q ss_pred cccEEEEecccccceeeccccccccccCCccccccccccceeecccCcccccccCCC--------------------CCC
Q 003193 559 QLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDL--------------------ETP 618 (840)
Q Consensus 559 ~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~--------------------~~~ 618 (840)
+|+.|++++|.- ..+.. ..+..+++|+.|++.++.--..++... ...
T Consensus 382 ~L~~L~L~~n~l-~~~~~------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 448 (680)
T 1ziw_A 382 PLHILNLTKNKI-SKIES------------DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448 (680)
T ss_dssp CCCEEECTTSCC-CEECT------------TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTT
T ss_pred cCceEECCCCCC-CeECh------------hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChh
Confidence 333333333221 11110 122344555555554443221111100 000
Q ss_pred CccCCCCCcccccCCCC--CcccccccccccCCcceEecccccchhhcccCCccccccCCCceEEEecccCCcceeech-
Q 003193 619 TNTQGSNPGIIAEGDPK--DFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSS- 695 (840)
Q Consensus 619 ~~~~~~~l~~l~~~~~~--~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~- 695 (840)
......+++.+....+. .....+..+..+++|+.|++++|.++.++...+ ..+++|+.|+++++ +++.++..
T Consensus 449 ~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~----~~l~~L~~L~Ls~N-~l~~~~~~~ 523 (680)
T 1ziw_A 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML----EGLEKLEILDLQHN-NLARLWKHA 523 (680)
T ss_dssp TTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSS-CCGGGGSTT
T ss_pred hhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh----ccccccCEEeCCCC-Cccccchhh
Confidence 11123344444443332 122334445667788888888887776665444 45678888888665 45554211
Q ss_pred ------hhHhhhcccceeeecccccchhhhccCcc-cccCccccccccccccccccCCcceeecCCCCccCCCcceEEec
Q 003193 696 ------SMVNGLEQLQQLDISHCKSMNEVINTRVG-RDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIA 768 (840)
Q Consensus 696 ------~~~~~l~sL~~L~i~~C~~L~~i~~~~~~-~~~~~~~~~l~sL~~L~i~~c~~L~~l~~~~~~~l~sL~~L~i~ 768 (840)
..+.++++|+.|+++++ .++.+ |.+ +.. +++|+.|+++++ +++.++...+..+++|+.|++.
T Consensus 524 ~~~~~~~~~~~l~~L~~L~L~~N-~l~~i---~~~~~~~------l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~ 592 (680)
T 1ziw_A 524 NPGGPIYFLKGLSHLHILNLESN-GFDEI---PVEVFKD------LFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQ 592 (680)
T ss_dssp STTSCCCTTTTCTTCCEEECCSS-CCCCC---CTTTTTT------CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred ccCCcchhhcCCCCCCEEECCCC-CCCCC---CHHHccc------ccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECC
Confidence 12567788888888875 45555 443 222 788888888776 5778876655577888888888
Q ss_pred cCCCccee
Q 003193 769 CCPNLKIF 776 (840)
Q Consensus 769 ~C~~L~~l 776 (840)
++ +++.+
T Consensus 593 ~N-~l~~~ 599 (680)
T 1ziw_A 593 KN-LITSV 599 (680)
T ss_dssp TS-CCCBC
T ss_pred CC-cCCcc
Confidence 87 34433
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.8e-33 Score=326.81 Aligned_cols=469 Identities=16% Similarity=0.106 Sum_probs=290.5
Q ss_pred hccCCCcEEEeccCCcccCC-ccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCC
Q 003193 207 KIDEAPTAISIPFRGIYELP-ERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLR 283 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~ 283 (840)
....++++|++++|.+..+. ..+ .+++|++|++++|.+....|.. |.++++|++|++++|.++.+ |..++++++|+
T Consensus 54 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~ 132 (606)
T 3t6q_A 54 SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA-LSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132 (606)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT-TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCC
T ss_pred ccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh-hcccccccEeeccccCcccCCcchhccCCccc
Confidence 56789999999999997664 434 7999999999999987555554 58999999999999999987 67799999999
Q ss_pred EEEccCCccCC--cccccCCCCCCEEeecCCCCccc-ChhhcCCCCCC--EEEccCCCCCCccCcccccCCCCCcEEEcc
Q 003193 284 TLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLK--LLDLSNCSKLKEIRPNVISNLTRLEELYMG 358 (840)
Q Consensus 284 ~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~--~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~ 358 (840)
+|++++|.+.. ++.+..+++|++|++++|.++.+ |..++.+++|+ +|++++ +.+..+++.. ....+|++|+++
T Consensus 133 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~-n~l~~~~~~~-~~~~~L~~L~l~ 210 (606)
T 3t6q_A 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG-NDIAGIEPGA-FDSAVFQSLNFG 210 (606)
T ss_dssp EEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTT-CCCCEECTTT-TTTCEEEEEECT
T ss_pred EEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCC-CccCccChhH-hhhccccccccC
Confidence 99999999887 36666799999999999999987 56689999999 999999 5777777764 455789999998
Q ss_pred CCcccceec----------------------CCCCCCcccccCCCCCCeEEEecCCCCCCCCcc--cccCcceEEEEEcC
Q 003193 359 NSFTQWKVE----------------------GQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGD 414 (840)
Q Consensus 359 ~~~~~~~~~----------------------~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~ 414 (840)
+|....... ......+..+..+ +|+.|+++.+.+..++... .+++|+.|++..+.
T Consensus 211 ~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 289 (606)
T 3t6q_A 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-SVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289 (606)
T ss_dssp TCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGS-EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred CchhHHHHhhhccccchhheechhhccccccccChhHhchhhcC-ceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence 874210000 0000011111111 4556666666555554432 45555555554333
Q ss_pred ---ccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeecccccccccccc-ccchhhcccccEEEeecCCCeEEE
Q 003193 415 ---VWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHE-LDDEEGFARLRHLHVHNGPEILHI 490 (840)
Q Consensus 415 ---~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-l~~~~~l~~L~~L~l~~~~~l~~~ 490 (840)
.+..+..+++++.|+++++.....+......+++|+.|++++|.....++.. + ..+++|++|+++++. +..+
T Consensus 290 l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~---~~l~~L~~L~l~~n~-l~~~ 365 (606)
T 3t6q_A 290 LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL---ENLENLRELDLSHDD-IETS 365 (606)
T ss_dssp CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT---TTCTTCCEEECCSSC-CCEE
T ss_pred cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh---hccCcCCEEECCCCc-cccc
Confidence 2223444455555555555444433222222455666666555443333322 2 445566666665554 2222
Q ss_pred EeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccc
Q 003193 491 LNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTN 570 (840)
Q Consensus 491 ~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~ 570 (840)
.........+++|++|+++++. +..+... ....+++|+.|++++|. ++...+...+..+++|++|++++|.-
T Consensus 366 ~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~------~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l 437 (606)
T 3t6q_A 366 DCCNLQLRNLSHLQSLNLSYNE-PLSLKTE------AFKECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHSLL 437 (606)
T ss_dssp EESTTTTTTCTTCCEEECCSCS-CEEECTT------TTTTCTTCSEEECTTCC-EECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred cCcchhcccCCCCCEEECCCCc-CCcCCHH------HhcCCccCCeEECCCCc-CCCcccchhhhCcccCCEEECCCCcc
Confidence 2112233455566666665532 2222111 12345556666665543 22222222234555666666655532
Q ss_pred cceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCc
Q 003193 571 LKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSL 650 (840)
Q Consensus 571 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L 650 (840)
-...+ ..+..+++|++|++++++--... ......+..+++|
T Consensus 438 ~~~~~-------------~~~~~l~~L~~L~L~~n~l~~~~--------------------------~~~~~~~~~l~~L 478 (606)
T 3t6q_A 438 DISSE-------------QLFDGLPALQHLNLQGNHFPKGN--------------------------IQKTNSLQTLGRL 478 (606)
T ss_dssp BTTCT-------------TTTTTCTTCCEEECTTCBCGGGE--------------------------ECSSCGGGGCTTC
T ss_pred CCcCH-------------HHHhCCCCCCEEECCCCCCCccc--------------------------cccchhhccCCCc
Confidence 11111 12334556666666555321100 0011234568999
Q ss_pred ceEecccccchhhcccCCccccccCCCceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccCcc
Q 003193 651 KKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMI 730 (840)
Q Consensus 651 ~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~ 730 (840)
++|++++|.++.++...+ ..+++|+.|++++| +++..++ ..+.++++| .|++++|. +..+. |+.+..
T Consensus 479 ~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~Ls~N-~l~~~~~-~~l~~l~~L-~L~L~~N~-l~~~~--~~~~~~--- 545 (606)
T 3t6q_A 479 EILVLSFCDLSSIDQHAF----TSLKMMNHVDLSHN-RLTSSSI-EALSHLKGI-YLNLASNH-ISIIL--PSLLPI--- 545 (606)
T ss_dssp CEEECTTSCCCEECTTTT----TTCTTCCEEECCSS-CCCGGGG-GGGTTCCSC-EEECCSSC-CCCCC--GGGHHH---
T ss_pred cEEECCCCccCccChhhh----ccccCCCEEECCCC-ccCcCCh-hHhCccccc-EEECcCCc-ccccC--Hhhccc---
Confidence 999999998887765544 56799999999777 5666543 457889999 99999964 54442 333333
Q ss_pred ccccccccccccccCC
Q 003193 731 EMVFPKLVSLQLSHLP 746 (840)
Q Consensus 731 ~~~l~sL~~L~i~~c~ 746 (840)
+++|+.|+++++|
T Consensus 546 ---l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 546 ---LSQQRTINLRQNP 558 (606)
T ss_dssp ---HHTSSEEECTTCC
T ss_pred ---CCCCCEEeCCCCC
Confidence 8899999999987
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4e-32 Score=313.28 Aligned_cols=487 Identities=18% Similarity=0.185 Sum_probs=334.7
Q ss_pred cCccchhhhhhccCCCcEEEeccCCcccCCcc--cCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-
Q 003193 197 NVADLKEELDKIDEAPTAISIPFRGIYELPER--LGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP- 273 (840)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp- 273 (840)
.+..+..+|...+..+++|++++|.+..++.. ..+++|++|++++|.+.. ++...|.++++|++|++++|.++.+|
T Consensus 15 ~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (570)
T 2z63_A 15 MELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLAL 93 (570)
T ss_dssp CSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCcCCcCCccCH
Confidence 34556667776778999999999999877643 379999999999998764 55556689999999999999998775
Q ss_pred hhhcCCCCCCEEEccCCccCC-c-ccccCCCCCCEEeecCCCCcc--cChhhcCCCCCCEEEccCCCCCCccCcccccCC
Q 003193 274 SSLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNL 349 (840)
Q Consensus 274 ~~l~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L 349 (840)
..|+++++|++|++++|.+.. + ..++++++|++|++++|.++. +|..++++++|++|++++ +.+..+++..++.+
T Consensus 94 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l 172 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVL 172 (570)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT-SCCCEECGGGGHHH
T ss_pred hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcC-CccceecHHHccch
Confidence 689999999999999999888 3 369999999999999999885 789999999999999999 57777776668888
Q ss_pred CCC----cEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCC--CCCcc-cccCcceEEEEEcCccC-----
Q 003193 350 TRL----EELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQV--MPQDL-VFVELERFRICIGDVWS----- 417 (840)
Q Consensus 350 ~~L----~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~----- 417 (840)
++| ++|++++|.+....+ ..+... +|+.|+++.+.... ++..+ .+++++...+..+....
T Consensus 173 ~~L~~~~~~L~l~~n~l~~~~~-------~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 244 (570)
T 2z63_A 173 HQMPLLNLSLDLSLNPMNFIQP-------GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244 (570)
T ss_dssp HTCTTCCCEEECTTCCCCEECT-------TTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCE
T ss_pred hccchhhhhcccCCCCceecCH-------HHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhh
Confidence 888 899999987654332 223333 68888888763221 11111 34444444443221110
Q ss_pred -----CCCCccc--cceEEEeeC-CCc-cchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeE
Q 003193 418 -----WSDGYET--SKTLKLQLN-NST-YLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEIL 488 (840)
Q Consensus 418 -----~~~~~~~--l~~L~l~~~-~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~ 488 (840)
.+..... ++.+.+..+ ... ..+.++. .+++|+.|++.++... .++..+ ..+ +|++|++.+|...
T Consensus 245 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~-~l~~~~---~~~-~L~~L~l~~n~~~- 317 (570)
T 2z63_A 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIE-RVKDFS---YNF-GWQHLELVNCKFG- 317 (570)
T ss_dssp ECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTG-GGTTCSEEEEESCEEC-SCCBCC---SCC-CCSEEEEESCBCS-
T ss_pred hcchhhhccccccchhhhhhhcchhhhhhchhhhc-CcCcccEEEecCccch-hhhhhh---ccC-CccEEeeccCccc-
Confidence 1111111 233333332 111 1222222 3577888888877543 455555 445 8888888887622
Q ss_pred EEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccc-hhHHhhcccccEEEEec
Q 003193 489 HILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFP-FSLVKNLLQLQKVKVTD 567 (840)
Q Consensus 489 ~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~-~~~~~~l~~L~~L~i~~ 567 (840)
.+ ....+++|++|++.++...... + ...+++|+.|++++|. ++.... ...+..+++|++|++++
T Consensus 318 ~l-----~~~~l~~L~~L~l~~n~~~~~~-----~----~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~ 382 (570)
T 2z63_A 318 QF-----PTLKLKSLKRLTFTSNKGGNAF-----S----EVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSF 382 (570)
T ss_dssp SC-----CBCBCSSCCEEEEESCBSCCBC-----C----CCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCS
T ss_pred cc-----CcccccccCEEeCcCCcccccc-----c----cccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCC
Confidence 11 1246788888888876532211 1 2567888888888764 443320 13456788888888888
Q ss_pred ccccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCccccccccccc
Q 003193 568 CTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVF 647 (840)
Q Consensus 568 c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l 647 (840)
|.- ..++. .+..+++|++|++.++.-....+. .....+
T Consensus 383 n~l-~~~~~-------------~~~~l~~L~~L~l~~n~l~~~~~~----------------------------~~~~~l 420 (570)
T 2z63_A 383 NGV-ITMSS-------------NFLGLEQLEHLDFQHSNLKQMSEF----------------------------SVFLSL 420 (570)
T ss_dssp CSE-EEEEE-------------EEETCTTCCEEECTTSEEESCTTS----------------------------CTTTTC
T ss_pred Ccc-ccccc-------------cccccCCCCEEEccCCccccccch----------------------------hhhhcC
Confidence 753 33322 234778888888887643222111 112468
Q ss_pred CCcceEecccccchhhcccCCccccccCCCceEEEecccCCc-ceeechhhHhhhcccceeeecccccchhhhccCcccc
Q 003193 648 PSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRL-KFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRD 726 (840)
Q Consensus 648 ~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L-~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~ 726 (840)
++|++|++++|.++......+ ..+++|+.|++++|.-. ..+| ..+..+++|++|++++|. +..+. |..+.
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~p--~~~~~l~~L~~L~l~~n~-l~~~~--~~~~~ 491 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIF----NGLSSLEVLKMAGNSFQENFLP--DIFTELRNLTFLDLSQCQ-LEQLS--PTAFN 491 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTT----TTCTTCCEEECTTCEEGGGEEC--SCCTTCTTCCEEECTTSC-CCEEC--TTTTT
T ss_pred CCCCEEeCcCCcccccchhhh----hcCCcCcEEECcCCcCccccch--hhhhcccCCCEEECCCCc-cccCC--hhhhh
Confidence 999999999997776544433 56799999999888533 2344 447889999999999975 44442 44444
Q ss_pred cCccccccccccccccccCCcceeecCCCCccCCCcceEEeccCCCc
Q 003193 727 DNMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIACCPNL 773 (840)
Q Consensus 727 ~~~~~~~l~sL~~L~i~~c~~L~~l~~~~~~~l~sL~~L~i~~C~~L 773 (840)
. +++|+.|++++| +++.++...+.++++|++|++.++|--
T Consensus 492 ~------l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 492 S------LSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp T------CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred c------ccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCccc
Confidence 4 899999999998 588887666668999999999998733
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6e-32 Score=310.09 Aligned_cols=475 Identities=15% Similarity=0.130 Sum_probs=231.1
Q ss_pred eccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-hhhcCCCCCCEEEccCCccCC-
Q 003193 217 IPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD- 294 (840)
Q Consensus 217 l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~- 294 (840)
.+++.+..+|..+. +++++|++++|.+....|.. |.++++|++|++++|.++.++ ..|+++++|++|++++|.+..
T Consensus 12 ~~~~~l~~ip~~~~-~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 89 (549)
T 2z81_A 12 GRSRSFTSIPSGLT-AAMKSLDLSFNKITYIGHGD-LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 89 (549)
T ss_dssp CTTSCCSSCCSCCC-TTCCEEECCSSCCCEECSST-TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred CCCCccccccccCC-CCccEEECcCCccCccChhh-hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence 33444444444332 44555555555544322222 355555555555555555432 345555555555555555554
Q ss_pred c-ccccCCCCCCEEeecCCCCcc--cChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCC
Q 003193 295 V-AIIGDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSN 371 (840)
Q Consensus 295 ~-~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 371 (840)
+ ..++++++|++|++++|.++. .|..++++++|++|++++|..++.+|...++++++|++|++++|.+....+
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---- 165 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS---- 165 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT----
T ss_pred CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh----
Confidence 2 225555555555555555542 234455555555555555433444544335555555555555554432221
Q ss_pred CCcccccCCCCCCeEEEecCCCCCCCCcc--cccCcceEEEEEcCccC-------CCCCccccceEEEeeCCCccc-hhh
Q 003193 372 ASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGDVWS-------WSDGYETSKTLKLQLNNSTYL-GYG 441 (840)
Q Consensus 372 ~~l~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~-------~~~~~~~l~~L~l~~~~~~~~-~~~ 441 (840)
..+..+++|+.|+++.+....++... .+++|+.|++..+.... ......+++.+++.++..... +..
T Consensus 166 ---~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 242 (549)
T 2z81_A 166 ---QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242 (549)
T ss_dssp ---TTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHH
T ss_pred ---hhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHH
Confidence 33444445555555554443333322 24445554444333211 112234455555554322211 111
Q ss_pred HH---HHHhcccceeecccccccc--ccc-cccchhhcccccEEEeecCCCeEEE--EeCCCccccccccceeecccccc
Q 003193 442 MK---MLLKRTEDLHLDELAGFKN--VVH-ELDDEEGFARLRHLHVHNGPEILHI--LNSDGRVGTFPLLESLFLHNLIN 513 (840)
Q Consensus 442 ~~---~~l~~L~~L~L~~~~~~~~--~~~-~l~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~L~~L~l~~~~~ 513 (840)
+. ..+++|+.+++.+|..... .+. .......+++|+.|.+.++..-... .+.......+++|++|.+.++ +
T Consensus 243 l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~ 321 (549)
T 2z81_A 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-K 321 (549)
T ss_dssp HHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS-C
T ss_pred HHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC-c
Confidence 11 1123455555555432210 000 0000133455555555544310000 000000012334555555543 2
Q ss_pred cccccccccccCCCCcccCCccEEEEecCCCcccccc-hhHHhhcccccEEEEecccccceeeccccccccccCCccccc
Q 003193 514 LEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFP-FSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGV 592 (840)
Q Consensus 514 L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~-~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~ 592 (840)
++.++... ...+++|+.|+++++.-...+++ ...+..+++|++|++++|. +..++... ..+.
T Consensus 322 l~~ip~~~------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~----------~~~~ 384 (549)
T 2z81_A 322 VFLVPCSF------SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTG----------EILL 384 (549)
T ss_dssp CCCCCHHH------HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHH----------HHGG
T ss_pred cccCCHHH------HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccch----------hhhh
Confidence 33222110 01345555555555432211111 0112344555555555542 22111000 0122
Q ss_pred cccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecccccchhhcccCCcccc
Q 003193 593 YFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIE 672 (840)
Q Consensus 593 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~ 672 (840)
.+++|++|+++++ .++.+ +.....+++|++|++++|.++.++...
T Consensus 385 ~l~~L~~L~Ls~N-~l~~l-----------------------------p~~~~~~~~L~~L~Ls~N~l~~l~~~~----- 429 (549)
T 2z81_A 385 TLKNLTSLDISRN-TFHPM-----------------------------PDSCQWPEKMRFLNLSSTGIRVVKTCI----- 429 (549)
T ss_dssp GCTTCCEEECTTC-CCCCC-----------------------------CSCCCCCTTCCEEECTTSCCSCCCTTS-----
T ss_pred cCCCCCEEECCCC-CCccC-----------------------------ChhhcccccccEEECCCCCcccccchh-----
Confidence 4555555555554 23332 333456789999999999887765332
Q ss_pred ccCCCceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccCccccccccccccccccCCcceeec
Q 003193 673 SWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFG 752 (840)
Q Consensus 673 ~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~ 752 (840)
.++|+.|++++| +++.. ...+++|++|++++| .++.+ |.. .. +++|+.|+++++ +++.++
T Consensus 430 --~~~L~~L~Ls~N-~l~~~-----~~~l~~L~~L~Ls~N-~l~~i---p~~-~~------l~~L~~L~Ls~N-~l~~~~ 489 (549)
T 2z81_A 430 --PQTLEVLDVSNN-NLDSF-----SLFLPRLQELYISRN-KLKTL---PDA-SL------FPVLLVMKISRN-QLKSVP 489 (549)
T ss_dssp --CTTCSEEECCSS-CCSCC-----CCCCTTCCEEECCSS-CCSSC---CCG-GG------CTTCCEEECCSS-CCCCCC
T ss_pred --cCCceEEECCCC-Chhhh-----cccCChhcEEECCCC-ccCcC---CCc-cc------CccCCEEecCCC-ccCCcC
Confidence 268999999777 57665 247889999999996 56666 542 12 889999999998 588877
Q ss_pred CCCCccCCCcceEEeccCCCc
Q 003193 753 IGDSVEFPSLCQLQIACCPNL 773 (840)
Q Consensus 753 ~~~~~~l~sL~~L~i~~C~~L 773 (840)
...+..+++|+.|++.+||-.
T Consensus 490 ~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 490 DGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp TTGGGGCTTCCEEECCSSCBC
T ss_pred HHHHhcCcccCEEEecCCCcc
Confidence 655668899999999999853
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=312.06 Aligned_cols=494 Identities=18% Similarity=0.177 Sum_probs=340.1
Q ss_pred ecCccchhhhhhccCCCcEEEeccCCcccCC-ccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-
Q 003193 196 QNVADLKEELDKIDEAPTAISIPFRGIYELP-ERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL- 272 (840)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l- 272 (840)
.....+..+|. .+.++++|++++|.+..++ ..+ .+++|++|++++|.....+++..|.++++|++|++++|.+..+
T Consensus 11 cs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 11 YRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp ESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred ccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence 34556777787 8899999999999997764 333 8999999999999877777667779999999999999999865
Q ss_pred ChhhcCCCCCCEEEccCCccCC--ccc--ccCCCCCCEEeecCCCCcccC--hhhcCCCCCCEEEccCCCCCCccCcccc
Q 003193 273 PSSLGCLINLRTLSLENCLVVD--VAI--IGDLKKLEILSLKHSSIEQLP--REIGQLTCLKLLDLSNCSKLKEIRPNVI 346 (840)
Q Consensus 273 p~~l~~l~~L~~L~L~~~~~~~--~~~--i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~L~~~~~l~~~p~~~l 346 (840)
|..|+++++|++|++++|.+.. +.. ++++++|++|++++|.++.++ ..++++++|++|++++ +.+..+.+..+
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~-N~i~~~~~~~l 168 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS-NQIFLVCEHEL 168 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES-SCCCCCCSGGG
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC-CcCCeeCHHHc
Confidence 8899999999999999999886 544 999999999999999998763 5799999999999999 55666554447
Q ss_pred cCC--CCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCC-CCCc------------------------
Q 003193 347 SNL--TRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQV-MPQD------------------------ 399 (840)
Q Consensus 347 ~~L--~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~-~~~~------------------------ 399 (840)
+.+ ++|+.|++++|.+....+.........+.+. .|+.|++++|.... .+..
T Consensus 169 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~ 247 (844)
T 3j0a_A 169 EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM-VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247 (844)
T ss_dssp HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTC-CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS
T ss_pred ccccCCccceEECCCCccccccccchhhcCCccccC-ceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc
Confidence 766 8899999988876543221111111111111 37778877764321 0000
Q ss_pred ---------------ccccCcceEEEEEcCc----cCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeecccccc
Q 003193 400 ---------------LVFVELERFRICIGDV----WSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGF 460 (840)
Q Consensus 400 ---------------~~~~~L~~L~l~~~~~----~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 460 (840)
....+|+.|++..+.. +..+..+++++.|+++.+.....+......+++|+.|++++|...
T Consensus 248 ~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 327 (844)
T 3j0a_A 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327 (844)
T ss_dssp SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS
T ss_pred cccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC
Confidence 0125677777765442 345677889999999998877765544445789999999998765
Q ss_pred ccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEe
Q 003193 461 KNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVE 540 (840)
Q Consensus 461 ~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~ 540 (840)
...+..+ ..+++|+.|++++|. +..+. ......+++|+.|+++++ .++.+ ..+++|+.|.++
T Consensus 328 ~~~~~~~---~~l~~L~~L~L~~N~-i~~~~--~~~~~~l~~L~~L~Ls~N-~l~~i-----------~~~~~L~~L~l~ 389 (844)
T 3j0a_A 328 ELYSSNF---YGLPKVAYIDLQKNH-IAIIQ--DQTFKFLEKLQTLDLRDN-ALTTI-----------HFIPSIPDIFLS 389 (844)
T ss_dssp CCCSCSC---SSCTTCCEEECCSCC-CCCCC--SSCSCSCCCCCEEEEETC-CSCCC-----------SSCCSCSEEEEE
T ss_pred ccCHHHh---cCCCCCCEEECCCCC-CCccC--hhhhcCCCCCCEEECCCC-CCCcc-----------cCCCCcchhccC
Confidence 5556666 679999999999985 33322 123467899999999985 34332 347899999998
Q ss_pred cCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCc
Q 003193 541 GCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTN 620 (840)
Q Consensus 541 ~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~ 620 (840)
++ +++.++. ...+++.|+++++. +..+... ..+..+++|+.|+++++. +..++...
T Consensus 390 ~N-~l~~l~~-----~~~~l~~L~ls~N~-l~~l~~~-----------~~~~~l~~L~~L~Ls~N~-l~~~~~~~----- 445 (844)
T 3j0a_A 390 GN-KLVTLPK-----INLTANLIHLSENR-LENLDIL-----------YFLLRVPHLQILILNQNR-FSSCSGDQ----- 445 (844)
T ss_dssp SC-CCCCCCC-----CCTTCCEEECCSCC-CCSSTTH-----------HHHTTCTTCCEEEEESCC-CCCCCSSS-----
T ss_pred CC-Ccccccc-----cccccceeecccCc-cccCchh-----------hhhhcCCccceeeCCCCc-cccccccc-----
Confidence 86 4566643 24678888888754 2222110 123367888888888764 22221110
Q ss_pred cCCCCCcccccCCCCCcccccccccccCCcceEecccccchhhcccCC-ccccccCCCceEEEecccCCcceeechhhHh
Q 003193 621 TQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSF-SAIESWGKNLTKLTVEKCGRLKFLFSSSMVN 699 (840)
Q Consensus 621 ~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~-~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~ 699 (840)
....+++|+.|++++|.++..+.... +.....+++|+.|++++| +++.+++ ..+.
T Consensus 446 ----------------------~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~ 501 (844)
T 3j0a_A 446 ----------------------TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPP-GVFS 501 (844)
T ss_dssp ----------------------SSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCT-TSSS
T ss_pred ----------------------ccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC-cccccCh-hHcc
Confidence 01236778888888887765543221 122356677888888666 6776654 3456
Q ss_pred hhcccceeeecccccchhhhccCcccccCccccccccccccccccCCcceeecCCCCccCCCcceEEeccCCCc
Q 003193 700 GLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIACCPNL 773 (840)
Q Consensus 700 ~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~~~~~~~l~sL~~L~i~~C~~L 773 (840)
++++|++|+++++ .++.+ |.+.. .++|+.|+++++. ++.++.. .+++|+.|++.+.|-.
T Consensus 502 ~l~~L~~L~Ls~N-~l~~l---~~~~~-------~~~L~~L~Ls~N~-l~~~~~~---~~~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 502 HLTALRGLSLNSN-RLTVL---SHNDL-------PANLEILDISRNQ-LLAPNPD---VFVSLSVLDITHNKFI 560 (844)
T ss_dssp SCCSCSEEEEESC-CCSSC---CCCCC-------CSCCCEEEEEEEC-CCCCCSC---CCSSCCEEEEEEECCC
T ss_pred chhhhheeECCCC-CCCcc---Chhhh-------hccccEEECCCCc-CCCCChh---HhCCcCEEEecCCCcc
Confidence 7788888888874 46555 32221 3678888887774 5555433 2567888888776544
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.6e-30 Score=296.87 Aligned_cols=475 Identities=17% Similarity=0.172 Sum_probs=317.4
Q ss_pred CcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCC
Q 003193 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENC 290 (840)
Q Consensus 212 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~ 290 (840)
.+.++-++.++..+|..+ .+++++|++++|.+.. ++...|.++++|++|++++|.++.+ |..|+++++|++|++++|
T Consensus 9 ~~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TTEEECCSSCCSSCCSSS-CSSCCEEECCSCCCCE-ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CcEEEeCCCCccccCCCc-cccccEEEccCCccCc-cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 345666777778888754 3679999999999874 4444568999999999999999977 467999999999999999
Q ss_pred ccCC--cccccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccCCCCCCc--cCcccccCCCCCcEEEccCCcccce
Q 003193 291 LVVD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKE--IRPNVISNLTRLEELYMGNSFTQWK 365 (840)
Q Consensus 291 ~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~--~p~~~l~~L~~L~~L~l~~~~~~~~ 365 (840)
.+.. +..++++++|++|++++|+++.+|. .++++++|++|++++ +.+.. +|.. ++++++|++|++++|.+...
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCS-SCCCCCCCCGG-GGGCTTCCEEECTTSCCCEE
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCC-CccceecChhh-hcccCCCCEEeCcCCcccee
Confidence 9988 5789999999999999999999886 689999999999999 45655 5665 89999999999999977543
Q ss_pred ecCCCCCCcccccCCCCC----CeEEEecCCCCCCCCcc-cccCcceEEEEEcCc-----cCCCCCccccceEEEeeCC-
Q 003193 366 VEGQSNASLGELKQLSRL----TTLEVHIPDAQVMPQDL-VFVELERFRICIGDV-----WSWSDGYETSKTLKLQLNN- 434 (840)
Q Consensus 366 ~~~~~~~~l~~l~~l~~L----~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~-----~~~~~~~~~l~~L~l~~~~- 434 (840)
.+ ..+..+++| +.|+++.|.+..++... ...+|+.+.+..+.. .........++...+....
T Consensus 165 ~~-------~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 237 (570)
T 2z63_A 165 YC-------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237 (570)
T ss_dssp CG-------GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEEC
T ss_pred cH-------HHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccc
Confidence 22 334444455 78999998887665543 344677777764321 1112223333333332210
Q ss_pred -----CccchhhHHHHHh--cccceeeccc-cccccccccccchhhcccccEEEeecCCCeEEEEeCCCcccccccccee
Q 003193 435 -----STYLGYGMKMLLK--RTEDLHLDEL-AGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESL 506 (840)
Q Consensus 435 -----~~~~~~~~~~~l~--~L~~L~L~~~-~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L 506 (840)
...++.+....++ .++.+.+.++ ......+..+ ..+++|++|++.++. +.. .......+ +|++|
T Consensus 238 ~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~---~~l~~L~~L~l~~~~-l~~---l~~~~~~~-~L~~L 309 (570)
T 2z63_A 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF---NCLTNVSSFSLVSVT-IER---VKDFSYNF-GWQHL 309 (570)
T ss_dssp CCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTT---GGGTTCSEEEEESCE-ECS---CCBCCSCC-CCSEE
T ss_pred cCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhh---cCcCcccEEEecCcc-chh---hhhhhccC-CccEE
Confidence 0111111111111 2334444444 2222333344 567788888887774 222 12223445 77888
Q ss_pred ecccccccccccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccC
Q 003193 507 FLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKN 586 (840)
Q Consensus 507 ~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~ 586 (840)
++.++. +..+ + ...+++|+.|++.++......+ . ..+++|++|++++|.- ......
T Consensus 310 ~l~~n~-~~~l-----~----~~~l~~L~~L~l~~n~~~~~~~-~---~~~~~L~~L~l~~n~l-~~~~~~--------- 365 (570)
T 2z63_A 310 ELVNCK-FGQF-----P----TLKLKSLKRLTFTSNKGGNAFS-E---VDLPSLEFLDLSRNGL-SFKGCC--------- 365 (570)
T ss_dssp EEESCB-CSSC-----C----BCBCSSCCEEEEESCBSCCBCC-C---CBCTTCCEEECCSSCC-BEEEEE---------
T ss_pred eeccCc-cccc-----C----cccccccCEEeCcCCccccccc-c---ccCCCCCEEeCcCCcc-Cccccc---------
Confidence 877753 2222 2 2457778888887765433332 1 5677888888877643 222100
Q ss_pred CccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecccccchhhccc
Q 003193 587 GSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLN 666 (840)
Q Consensus 587 ~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~ 666 (840)
...+..+++|++|++.++. +..++ .....+++|++|++++|.+...+..
T Consensus 366 -~~~~~~~~~L~~L~l~~n~-l~~~~-----------------------------~~~~~l~~L~~L~l~~n~l~~~~~~ 414 (570)
T 2z63_A 366 -SQSDFGTTSLKYLDLSFNG-VITMS-----------------------------SNFLGLEQLEHLDFQHSNLKQMSEF 414 (570)
T ss_dssp -EHHHHTCSCCCEEECCSCS-EEEEE-----------------------------EEEETCTTCCEEECTTSEEESCTTS
T ss_pred -cccccccCccCEEECCCCc-ccccc-----------------------------ccccccCCCCEEEccCCccccccch
Confidence 0123467778888877764 22221 1135689999999999987765432
Q ss_pred CCccccccCCCceEEEecccCCcceeechhhHhhhcccceeeecccccch-hhhccCcccccCccccccccccccccccC
Q 003193 667 SFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMN-EVINTRVGRDDNMIEMVFPKLVSLQLSHL 745 (840)
Q Consensus 667 ~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~-~i~~~~~~~~~~~~~~~l~sL~~L~i~~c 745 (840)
.. ...+++|+.|++++|. ++..++ ..+.++++|++|++++|.-.. .+ |..+.. +++|+.|++++|
T Consensus 415 ~~---~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~---p~~~~~------l~~L~~L~l~~n 480 (570)
T 2z63_A 415 SV---FLSLRNLIYLDISHTH-TRVAFN-GIFNGLSSLEVLKMAGNSFQENFL---PDIFTE------LRNLTFLDLSQC 480 (570)
T ss_dssp CT---TTTCTTCCEEECTTSC-CEECCT-TTTTTCTTCCEEECTTCEEGGGEE---CSCCTT------CTTCCEEECTTS
T ss_pred hh---hhcCCCCCEEeCcCCc-ccccch-hhhhcCCcCcEEECcCCcCccccc---hhhhhc------ccCCCEEECCCC
Confidence 11 2577999999998885 444433 457889999999999987432 23 655544 899999999999
Q ss_pred CcceeecCCCCccCCCcceEEeccCCCccee
Q 003193 746 PKLTRFGIGDSVEFPSLCQLQIACCPNLKIF 776 (840)
Q Consensus 746 ~~L~~l~~~~~~~l~sL~~L~i~~C~~L~~l 776 (840)
. ++.++...+.++++|++|++.+| ++..+
T Consensus 481 ~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~ 509 (570)
T 2z63_A 481 Q-LEQLSPTAFNSLSSLQVLNMASN-QLKSV 509 (570)
T ss_dssp C-CCEECTTTTTTCTTCCEEECCSS-CCSCC
T ss_pred c-cccCChhhhhcccCCCEEeCCCC-cCCCC
Confidence 5 77775445568899999999998 45444
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.1e-30 Score=299.57 Aligned_cols=463 Identities=16% Similarity=0.172 Sum_probs=330.6
Q ss_pred ccchhhhhhccCCCcEEEeccCCcccCCc-cc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChh-
Q 003193 199 ADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS- 275 (840)
Q Consensus 199 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~- 275 (840)
..+..+|....+.+++|++++|.+..++. .+ .+++|++|++++|.+....| ..|.++++|++|++++|.++.+|..
T Consensus 15 ~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~ 93 (549)
T 2z81_A 15 RSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLSDNHLSSLSSSW 93 (549)
T ss_dssp SCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred CccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh-hhccccccCCEEECCCCccCccCHHH
Confidence 45566676667899999999999977753 33 79999999999999875444 4568999999999999999988765
Q ss_pred hcCCCCCCEEEccCCccCC---cccccCCCCCCEEeecCCC-CcccC-hhhcCCCCCCEEEccCCCCCCccCcccccCCC
Q 003193 276 LGCLINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSS-IEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350 (840)
Q Consensus 276 l~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~-l~~lp-~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~ 350 (840)
++++++|++|++++|.+.. +..++++++|++|++++|. +..+| ..++++++|++|++++| .+....+..+++++
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~ 172 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIR 172 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCS
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC-cccccChhhhhccc
Confidence 9999999999999999875 5789999999999999997 77887 57999999999999995 56554444489999
Q ss_pred CCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCC---Cc--ccccCcceEEEEEcCcc--------C
Q 003193 351 RLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMP---QD--LVFVELERFRICIGDVW--------S 417 (840)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~---~~--~~~~~L~~L~l~~~~~~--------~ 417 (840)
+|++|++++|....... ..+..+++|+.|++++|.+...+ .. ....+|+.|.+..+... .
T Consensus 173 ~L~~L~l~~n~~~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 245 (549)
T 2z81_A 173 DIHHLTLHLSESAFLLE-------IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245 (549)
T ss_dssp EEEEEEEECSBSTTHHH-------HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHG
T ss_pred cCceEecccCcccccch-------hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHH
Confidence 99999999886532111 12346889999999999877642 11 25678888888754422 1
Q ss_pred CCCCccccceEEEeeCCCccchhh------HHHHHhcccceeecccccccccc-ccccc-hhhcccccEEEeecCCCeEE
Q 003193 418 WSDGYETSKTLKLQLNNSTYLGYG------MKMLLKRTEDLHLDELAGFKNVV-HELDD-EEGFARLRHLHVHNGPEILH 489 (840)
Q Consensus 418 ~~~~~~~l~~L~l~~~~~~~~~~~------~~~~l~~L~~L~L~~~~~~~~~~-~~l~~-~~~l~~L~~L~l~~~~~l~~ 489 (840)
.......++.+.+..+.....+.+ ....+++++.|.+.++....... ..+.. ...+++|+.|+++++. +..
T Consensus 246 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ 324 (549)
T 2z81_A 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFL 324 (549)
T ss_dssp GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCC
T ss_pred HhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-ccc
Confidence 234556788888877543322110 01124678888887764322110 00000 0346789999999886 332
Q ss_pred EEeCCCcc-ccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccc-hhHHhhcccccEEEEec
Q 003193 490 ILNSDGRV-GTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFP-FSLVKNLLQLQKVKVTD 567 (840)
Q Consensus 490 ~~~~~~~~-~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~-~~~~~~l~~L~~L~i~~ 567 (840)
++ ... ..+++|++|+++++.--..++... ...+.+++|+.|++++| .++.+++ ...+..+++|++|++++
T Consensus 325 ip---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~ 396 (549)
T 2z81_A 325 VP---CSFSQHLKSLEFLDLSENLMVEEYLKNS----ACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISR 396 (549)
T ss_dssp CC---HHHHHHCTTCCEEECCSSCCCHHHHHHH----TCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTT
T ss_pred CC---HHHHhcCccccEEEccCCccccccccch----hhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCC
Confidence 21 112 468999999999865332222111 11457899999999997 5666643 13467899999999999
Q ss_pred ccccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCccccccccccc
Q 003193 568 CTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVF 647 (840)
Q Consensus 568 c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l 647 (840)
| .+..++. .+..+++|++|+++++. ++.++... .
T Consensus 397 N-~l~~lp~-------------~~~~~~~L~~L~Ls~N~-l~~l~~~~-------------------------------~ 430 (549)
T 2z81_A 397 N-TFHPMPD-------------SCQWPEKMRFLNLSSTG-IRVVKTCI-------------------------------P 430 (549)
T ss_dssp C-CCCCCCS-------------CCCCCTTCCEEECTTSC-CSCCCTTS-------------------------------C
T ss_pred C-CCccCCh-------------hhcccccccEEECCCCC-cccccchh-------------------------------c
Confidence 8 4555542 34478999999999875 44443321 4
Q ss_pred CCcceEecccccchhhcccCCccccccCCCceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCccccc
Q 003193 648 PSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDD 727 (840)
Q Consensus 648 ~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~ 727 (840)
++|++|++++|+++.++ ..+++|++|++++| +++.+|. ...+++|+.|++++| .++.+. |+.+..
T Consensus 431 ~~L~~L~Ls~N~l~~~~--------~~l~~L~~L~Ls~N-~l~~ip~---~~~l~~L~~L~Ls~N-~l~~~~--~~~~~~ 495 (549)
T 2z81_A 431 QTLEVLDVSNNNLDSFS--------LFLPRLQELYISRN-KLKTLPD---ASLFPVLLVMKISRN-QLKSVP--DGIFDR 495 (549)
T ss_dssp TTCSEEECCSSCCSCCC--------CCCTTCCEEECCSS-CCSSCCC---GGGCTTCCEEECCSS-CCCCCC--TTGGGG
T ss_pred CCceEEECCCCChhhhc--------ccCChhcEEECCCC-ccCcCCC---cccCccCCEEecCCC-ccCCcC--HHHHhc
Confidence 68999999999887653 35689999999776 7888864 356889999999996 466552 333433
Q ss_pred CccccccccccccccccCC
Q 003193 728 NMIEMVFPKLVSLQLSHLP 746 (840)
Q Consensus 728 ~~~~~~l~sL~~L~i~~c~ 746 (840)
+++|+.|++++++
T Consensus 496 ------l~~L~~L~l~~N~ 508 (549)
T 2z81_A 496 ------LTSLQKIWLHTNP 508 (549)
T ss_dssp ------CTTCCEEECCSSC
T ss_pred ------CcccCEEEecCCC
Confidence 8899999999887
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=3.5e-30 Score=308.93 Aligned_cols=491 Identities=17% Similarity=0.113 Sum_probs=329.9
Q ss_pred cEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCC-CCC-ChhhcCCCCCCEEEccCC
Q 003193 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRF-HSL-PSSLGCLINLRTLSLENC 290 (840)
Q Consensus 213 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~-~~l-p~~l~~l~~L~~L~L~~~ 290 (840)
+..+.+++++..+|. -.+++++|++++|.+....|.. |.++++|++|++++|.. ..+ |..|+++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 467778888899998 5689999999999987555554 59999999999999954 456 788999999999999999
Q ss_pred ccCC--cccccCCCCCCEEeecCCCCcc-cChh--hcCCCCCCEEEccCCCCCCcc-CcccccCCCCCcEEEccCCcccc
Q 003193 291 LVVD--VAIIGDLKKLEILSLKHSSIEQ-LPRE--IGQLTCLKLLDLSNCSKLKEI-RPNVISNLTRLEELYMGNSFTQW 364 (840)
Q Consensus 291 ~~~~--~~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~L~~~~~l~~~-p~~~l~~L~~L~~L~l~~~~~~~ 364 (840)
.+.. |..++++++|++|++++|.++. +|.. ++++++|++|++++| .+..+ +...++++++|++|++++|.+..
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCe
Confidence 9987 7899999999999999999985 5655 899999999999995 55555 33458999999999999997653
Q ss_pred eecCCCCCCcccccCC--CCCCeEEEecCCCCCCC-Ccc-c------ccCcceEEEEEcCccC----CC---CCccccce
Q 003193 365 KVEGQSNASLGELKQL--SRLTTLEVHIPDAQVMP-QDL-V------FVELERFRICIGDVWS----WS---DGYETSKT 427 (840)
Q Consensus 365 ~~~~~~~~~l~~l~~l--~~L~~L~l~~~~~~~~~-~~~-~------~~~L~~L~l~~~~~~~----~~---~~~~~l~~ 427 (840)
..+ ..+..+ ++|+.|+++.|.+.... ..+ . ...|+.|++..+.... .+ .....+..
T Consensus 163 ~~~-------~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~ 235 (844)
T 3j0a_A 163 VCE-------HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235 (844)
T ss_dssp CCS-------GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSE
T ss_pred eCH-------HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccc
Confidence 322 444444 78999999988765422 211 1 2248888876553211 11 11234445
Q ss_pred EEEeeC---------CCccch-hhHHH-HHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCc
Q 003193 428 LKLQLN---------NSTYLG-YGMKM-LLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGR 496 (840)
Q Consensus 428 L~l~~~---------~~~~~~-~~~~~-~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 496 (840)
+.+..+ ...... ..+.. ..++|+.|+++++......+..+ ..+++|+.|++++|. +..+. ...
T Consensus 236 L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~-i~~~~--~~~ 309 (844)
T 3j0a_A 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF---ETLKDLKVLNLAYNK-INKIA--DEA 309 (844)
T ss_dssp EECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS---SSCCCCCEEEEESCC-CCEEC--TTT
T ss_pred eecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh---hcCCCCCEEECCCCc-CCCCC--hHH
Confidence 554411 000111 01111 12578888888887655555555 678889999998886 33332 233
Q ss_pred cccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeec
Q 003193 497 VGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVG 576 (840)
Q Consensus 497 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 576 (840)
...+++|++|+++++ .+..+... ....+++|+.|+++++ .+..+++. .+..+++|++|+++++. +..+
T Consensus 310 ~~~l~~L~~L~Ls~N-~l~~~~~~------~~~~l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N~-l~~i-- 377 (844)
T 3j0a_A 310 FYGLDNLQVLNLSYN-LLGELYSS------NFYGLPKVAYIDLQKN-HIAIIQDQ-TFKFLEKLQTLDLRDNA-LTTI-- 377 (844)
T ss_dssp TTTCSSCCEEEEESC-CCSCCCSC------SCSSCTTCCEEECCSC-CCCCCCSS-CSCSCCCCCEEEEETCC-SCCC--
T ss_pred hcCCCCCCEEECCCC-CCCccCHH------HhcCCCCCCEEECCCC-CCCccChh-hhcCCCCCCEEECCCCC-CCcc--
Confidence 467888899988875 44443222 2456788889988886 56666442 34678888899888864 2222
Q ss_pred cccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecc
Q 003193 577 KESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLS 656 (840)
Q Consensus 577 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~ 656 (840)
..+++|+.|.+.++. +..++............ .-.+...+. ......+|+|+.|+++
T Consensus 378 ---------------~~~~~L~~L~l~~N~-l~~l~~~~~~l~~L~ls---~N~l~~l~~----~~~~~~l~~L~~L~Ls 434 (844)
T 3j0a_A 378 ---------------HFIPSIPDIFLSGNK-LVTLPKINLTANLIHLS---ENRLENLDI----LYFLLRVPHLQILILN 434 (844)
T ss_dssp ---------------SSCCSCSEEEEESCC-CCCCCCCCTTCCEEECC---SCCCCSSTT----HHHHTTCTTCCEEEEE
T ss_pred ---------------cCCCCcchhccCCCC-cccccccccccceeecc---cCccccCch----hhhhhcCCccceeeCC
Confidence 246777777776653 33333321110000100 000000000 0112368999999999
Q ss_pred cccchhhcccCCccccccCCCceEEEecccCCcceeec----hhhHhhhcccceeeecccccchhhhccCcccccCcccc
Q 003193 657 SINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFS----SSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEM 732 (840)
Q Consensus 657 ~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~----~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~ 732 (840)
+|.++.++..... ..+++|+.|+++++ .++..+. ...+.++++|+.|++++| .++.+. +..+..
T Consensus 435 ~N~l~~~~~~~~~---~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~--~~~~~~----- 502 (844)
T 3j0a_A 435 QNRFSSCSGDQTP---SENPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLP--PGVFSH----- 502 (844)
T ss_dssp SCCCCCCCSSSSS---CSCTTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCC--TTSSSS-----
T ss_pred CCccccccccccc---ccCCccccccCCCC-ccccccccccchhhhcCcccccEEECCCC-cccccC--hhHccc-----
Confidence 9988876544332 35699999999876 4543321 134678899999999996 566662 333333
Q ss_pred ccccccccccccCCcceeecCCCCccCCCcceEEeccCC
Q 003193 733 VFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIACCP 771 (840)
Q Consensus 733 ~l~sL~~L~i~~c~~L~~l~~~~~~~l~sL~~L~i~~C~ 771 (840)
+++|+.|+++++ +++.++...+ .++|+.|+++++.
T Consensus 503 -l~~L~~L~Ls~N-~l~~l~~~~~--~~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 503 -LTALRGLSLNSN-RLTVLSHNDL--PANLEILDISRNQ 537 (844)
T ss_dssp -CCSCSEEEEESC-CCSSCCCCCC--CSCCCEEEEEEEC
T ss_pred -hhhhheeECCCC-CCCccChhhh--hccccEEECCCCc
Confidence 899999999999 6888886554 2899999999874
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.9e-29 Score=286.92 Aligned_cols=454 Identities=15% Similarity=0.129 Sum_probs=250.7
Q ss_pred cEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCc
Q 003193 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL 291 (840)
Q Consensus 213 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~ 291 (840)
++++++++.+..+|..+. +++++|++++|.+.. ++...|.++++|++|++++|.++.+ |..|+++++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCC-CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccc-cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 577888888877776554 778888888777653 4444457788888888888887765 6677788888888888887
Q ss_pred cCC-cccccCCCCCCEEeecCCCCcc--cChhhcCCCCCCEEEccCCCCCCccCcccccCCCCC--cEEEccCCcc--cc
Q 003193 292 VVD-VAIIGDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL--EELYMGNSFT--QW 364 (840)
Q Consensus 292 ~~~-~~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L--~~L~l~~~~~--~~ 364 (840)
++. |.. .+++|++|++++|.++. +|..++++++|++|++++ +.+.. ..++.+++| ++|++++|.+ ..
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~-n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLST-THLEK---SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEE-SSCCG---GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecC-cccch---hhccccccceeeEEEeecccccccc
Confidence 777 444 77788888888887775 467778888888888877 34444 225666666 7777777755 21
Q ss_pred eecCCCCCCcccccCCCC-CCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCC----Cccch
Q 003193 365 KVEGQSNASLGELKQLSR-LTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNN----STYLG 439 (840)
Q Consensus 365 ~~~~~~~~~l~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~----~~~~~ 439 (840)
. ....+..+.. ...++++.+......... ....++.++.++++.+. .....
T Consensus 155 ~-------~~~~l~~l~~~~l~l~l~~n~~~~~~~~~-----------------~~~~l~~L~~L~l~~n~~~~~~~~~~ 210 (520)
T 2z7x_B 155 E-------DPEGLQDFNTESLHIVFPTNKEFHFILDV-----------------SVKTVANLELSNIKCVLEDNKCSYFL 210 (520)
T ss_dssp C-------CTTTTTTCCEEEEEEECCSSSCCCCCCCC-----------------CCTTCSEEEECCEEECCSTTTTHHHH
T ss_pred c-------ccccccccccceEEEEeccCcchhhhhhh-----------------hhhcccceeeccccccccccccceee
Confidence 1 1122333221 112233333322111111 11122333333333322 00000
Q ss_pred hhHH--HHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCcc-----ccccccceeeccccc
Q 003193 440 YGMK--MLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRV-----GTFPLLESLFLHNLI 512 (840)
Q Consensus 440 ~~~~--~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-----~~~~~L~~L~l~~~~ 512 (840)
..+. ..+++|+.|++.++......+..+.+....++|++|++++|.-...+ +... ..+++|+.+++.++.
T Consensus 211 ~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~---p~~~~~~~~~~l~~L~~l~l~~n~ 287 (520)
T 2z7x_B 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL---DFRDFDYSGTSLKALSIHQVVSDV 287 (520)
T ss_dssp HHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCC---CCCCCCCCSCCCCEEEEEEEEECC
T ss_pred cchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcc---ccchhhcccccCceeEeccccccc
Confidence 0000 01334555555444322211111100011235555555555311011 1111 334444444444422
Q ss_pred ccccccccccccCCCCccc---CCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCcc
Q 003193 513 NLEKVCDGKVRLNEDDKSF---SNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSI 589 (840)
Q Consensus 513 ~L~~~~~~~~~~~~~~~~~---~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~ 589 (840)
- .++... ...+ ++|+.|+++++. +...+ ....+++|++|++++|.--..++ .
T Consensus 288 ~--~~p~~~------~~~~~~~~~L~~L~l~~n~-l~~~~---~~~~l~~L~~L~Ls~n~l~~~~~-------------~ 342 (520)
T 2z7x_B 288 F--GFPQSY------IYEIFSNMNIKNFTVSGTR-MVHML---CPSKISPFLHLDFSNNLLTDTVF-------------E 342 (520)
T ss_dssp C--CSCTHH------HHHHHHTCCCSEEEEESSC-CCCCC---CCSSCCCCCEEECCSSCCCTTTT-------------T
T ss_pred e--ecchhh------hhcccccCceeEEEcCCCc-ccccc---chhhCCcccEEEeECCccChhhh-------------h
Confidence 1 111000 0011 346666665543 22221 11345566666666553222111 1
Q ss_pred ccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecccccchh-hcccCC
Q 003193 590 SGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEK-IWLNSF 668 (840)
Q Consensus 590 ~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~-~~~~~~ 668 (840)
.+..+++|++|++.++.- ..+ ..++..+..+++|++|++++|.++. ++.+.+
T Consensus 343 ~~~~l~~L~~L~L~~N~l-~~l--------------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~ 395 (520)
T 2z7x_B 343 NCGHLTELETLILQMNQL-KEL--------------------------SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395 (520)
T ss_dssp TCCCCSSCCEEECCSSCC-CBH--------------------------HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC
T ss_pred hhccCCCCCEEEccCCcc-Ccc--------------------------ccchHHHhhCCCCCEEECCCCcCCcccccchh
Confidence 233556666666665531 111 0112234568899999999998877 765544
Q ss_pred ccccccCCCceEEEecccCCcceeechhhHhhh-cccceeeecccccchhhhccCcccccCccccccccccccccccCCc
Q 003193 669 SAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGL-EQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPK 747 (840)
Q Consensus 669 ~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l-~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~ 747 (840)
..+++|++|++++|.--...| ..+ ++|+.|++++| .++.+ |.++.. +++|+.|++++| +
T Consensus 396 ----~~l~~L~~L~Ls~N~l~~~~~-----~~l~~~L~~L~Ls~N-~l~~i---p~~~~~------l~~L~~L~L~~N-~ 455 (520)
T 2z7x_B 396 ----SWTKSLLSLNMSSNILTDTIF-----RCLPPRIKVLDLHSN-KIKSI---PKQVVK------LEALQELNVASN-Q 455 (520)
T ss_dssp ----CCCTTCCEEECCSSCCCGGGG-----GSCCTTCCEEECCSS-CCCCC---CGGGGG------CTTCCEEECCSS-C
T ss_pred ----ccCccCCEEECcCCCCCcchh-----hhhcccCCEEECCCC-ccccc---chhhhc------CCCCCEEECCCC-c
Confidence 456899999998875323222 223 68999999996 46666 666544 899999999998 5
Q ss_pred ceeecCCCCccCCCcceEEeccCCCc
Q 003193 748 LTRFGIGDSVEFPSLCQLQIACCPNL 773 (840)
Q Consensus 748 L~~l~~~~~~~l~sL~~L~i~~C~~L 773 (840)
++.+|...+.++++|++|++.++|--
T Consensus 456 l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 456 LKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCHHHhccCCcccEEECcCCCCc
Confidence 88888765567899999999998743
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=7.6e-30 Score=295.64 Aligned_cols=361 Identities=14% Similarity=0.139 Sum_probs=224.0
Q ss_pred CCchhhcCCCCCcEEEcCCCCCCC------------------CChhhc--CCCCCCEEEccCCccCC--cccccCCCCCC
Q 003193 248 IPDPFFEGMTELRVLDLTGFRFHS------------------LPSSLG--CLINLRTLSLENCLVVD--VAIIGDLKKLE 305 (840)
Q Consensus 248 ~~~~~~~~l~~Lr~L~l~~~~~~~------------------lp~~l~--~l~~L~~L~L~~~~~~~--~~~i~~L~~L~ 305 (840)
+|.. ++++++|++|++++|.++. +|+.++ ++++|++|++++|.+.. |..++++++|+
T Consensus 198 ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 5555 4788899999999998887 888888 89999999999888766 78888999999
Q ss_pred EEeecCCC-Cc--ccChhhcCC------CCCCEEEccCCCCCCccCc-ccccCCCCCcEEEccCCcccceecCCCCCCcc
Q 003193 306 ILSLKHSS-IE--QLPREIGQL------TCLKLLDLSNCSKLKEIRP-NVISNLTRLEELYMGNSFTQWKVEGQSNASLG 375 (840)
Q Consensus 306 ~L~l~~~~-l~--~lp~~i~~L------~~L~~L~L~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~ 375 (840)
+|++++|+ ++ .+|..++++ ++|++|++++ +.+..+|. +.++++++|++|++++|.+.+.+ .
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~-n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~i--------p 347 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY-NNLKTFPVETSLQKMKKLGMLECLYNQLEGKL--------P 347 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS-SCCSSCCCHHHHTTCTTCCEEECCSCCCEEEC--------C
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC-CcCCccCchhhhccCCCCCEEeCcCCcCccch--------h
Confidence 99999987 87 488888876 8999999988 46668887 13788899999999888765322 1
Q ss_pred cccCCCCCCeEEEecCCCCCCCCcc-cccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHH-Hhccccee
Q 003193 376 ELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKML-LKRTEDLH 453 (840)
Q Consensus 376 ~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~-l~~L~~L~ 453 (840)
.+..+++|+.|++++|.+..+|..+ .+++ +|+.|+++.+....+|.++... +++|+.|+
T Consensus 348 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~-------------------~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~ 408 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQITEIPANFCGFTE-------------------QVENLSFAHNKLKYIPNIFDAKSVSVMSAID 408 (636)
T ss_dssp CCEEEEEESEEECCSSEEEECCTTSEEECT-------------------TCCEEECCSSCCSSCCSCCCTTCSSCEEEEE
T ss_pred hhCCCCCCCEEECCCCccccccHhhhhhcc-------------------cCcEEEccCCcCcccchhhhhcccCccCEEE
Confidence 4566678888888887766555443 3333 0444444444444444433221 23677788
Q ss_pred eccccccccccccccch----hhcccccEEEeecCCCeEEEEeCCCc-cccccccceeecccccccccccccccccC-CC
Q 003193 454 LDELAGFKNVVHELDDE----EGFARLRHLHVHNGPEILHILNSDGR-VGTFPLLESLFLHNLINLEKVCDGKVRLN-ED 527 (840)
Q Consensus 454 L~~~~~~~~~~~~l~~~----~~l~~L~~L~l~~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~L~~~~~~~~~~~-~~ 527 (840)
+++|......|..+.+. -.+++|++|++++|.- ..+ ... ...+++|++|+++++ .+..++...+... ..
T Consensus 409 Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~~l---p~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~ 483 (636)
T 4eco_A 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI-SKF---PKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENEN 483 (636)
T ss_dssp CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC-CSC---CTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEE
T ss_pred CcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc-CcC---CHHHHccCCCCCEEECCCC-CCCCcCHHHhcccccc
Confidence 87776665555544200 0456788888887752 211 111 134677888888774 3444443222100 00
Q ss_pred CcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCcc
Q 003193 528 DKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQ 607 (840)
Q Consensus 528 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~ 607 (840)
...+++|+.|+++++ .++.+|.......+++|++|++++|.- ..++. .+..+++|+.|++++++.
T Consensus 484 ~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l-~~ip~-------------~~~~l~~L~~L~Ls~N~~ 548 (636)
T 4eco_A 484 FKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSF-SKFPT-------------QPLNSSTLKGFGIRNQRD 548 (636)
T ss_dssp CTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSSCC-SSCCC-------------GGGGCSSCCEEECCSCBC
T ss_pred ccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCCCC-CCcCh-------------hhhcCCCCCEEECCCCcc
Confidence 112237777887775 455664321113677777777777643 22332 344677777777765442
Q ss_pred cccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecccccchhhcccCCccccccCCCceEEEecccC
Q 003193 608 LTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCG 687 (840)
Q Consensus 608 L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~ 687 (840)
+..= .-....+..+..+++|++|+|++|.+..+|... .++|+.|++++|+
T Consensus 549 ls~N-----------------------~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~-------~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 549 AQGN-----------------------RTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI-------TPNISVLDIKDNP 598 (636)
T ss_dssp TTCC-----------------------BCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC-------CTTCCEEECCSCT
T ss_pred cccC-----------------------cccccChHHHhcCCCCCEEECCCCcCCccCHhH-------hCcCCEEECcCCC
Confidence 1110 000111222345677777777777666655431 1667777776653
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=3.7e-29 Score=294.00 Aligned_cols=401 Identities=14% Similarity=0.155 Sum_probs=252.9
Q ss_pred CCCcEEEeccCCc-ccCCccc-CCCcceeEee-ccCccccC---------------------------------------
Q 003193 210 EAPTAISIPFRGI-YELPERL-GFLKLKLFLF-FTENLSLQ--------------------------------------- 247 (840)
Q Consensus 210 ~~l~~L~l~~~~~-~~l~~~~-~~~~L~~L~l-~~~~~~~~--------------------------------------- 247 (840)
.+++.|+++++++ +.+|+.+ .+++|++|++ ++|.+.+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 5788899999988 4677666 7999999999 55543222
Q ss_pred -------------------------------------CCchhhcCCCCCcEEEcCCCCCCC------------------C
Q 003193 248 -------------------------------------IPDPFFEGMTELRVLDLTGFRFHS------------------L 272 (840)
Q Consensus 248 -------------------------------------~~~~~~~~l~~Lr~L~l~~~~~~~------------------l 272 (840)
+|.. +.++++|++|++++|.++. +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 5554 4778888888888888887 8
Q ss_pred Chhhc--CCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCC-Ccc--cChhhcCCC-------CCCEEEccCCCCC
Q 003193 273 PSSLG--CLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSS-IEQ--LPREIGQLT-------CLKLLDLSNCSKL 338 (840)
Q Consensus 273 p~~l~--~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~-l~~--lp~~i~~L~-------~L~~L~L~~~~~l 338 (840)
|+.++ ++++|++|+|++|.+.. |..++++++|++|++++|+ ++. +|..+++++ +|++|++++ +.+
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~-N~L 560 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY-NNL 560 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS-SCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC-CcC
Confidence 88877 88888888888887665 7788888888888888887 774 787777666 888888888 466
Q ss_pred CccCc-ccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcc-cccC-cceEEEEEcCc
Q 003193 339 KEIRP-NVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVE-LERFRICIGDV 415 (840)
Q Consensus 339 ~~~p~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~-L~~L~l~~~~~ 415 (840)
..+|. ..++++++|++|++++|.+. . +..+..+++|+.|++++|.+..+|..+ .+++ |+.|+
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~-~--------lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~------ 625 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVR-H--------LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLG------ 625 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCC-B--------CCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEE------
T ss_pred CccCChhhhhcCCCCCEEECCCCCcc-c--------chhhcCCCcceEEECcCCccccchHHHhhccccCCEEE------
Confidence 68877 23788888888888888654 1 125677788888888888777666543 3344 44444
Q ss_pred cCCCCCccccceEEEeeCCCccchhhHHHH-Hhcccceeeccccccccccccccchh--hcccccEEEeecCCCeEEEEe
Q 003193 416 WSWSDGYETSKTLKLQLNNSTYLGYGMKML-LKRTEDLHLDELAGFKNVVHELDDEE--GFARLRHLHVHNGPEILHILN 492 (840)
Q Consensus 416 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~-l~~L~~L~L~~~~~~~~~~~~l~~~~--~l~~L~~L~l~~~~~l~~~~~ 492 (840)
++.+....+|.++... .++|+.|++++|.....++....... .+++|+.|++++|.- ..+
T Consensus 626 --------------Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L-~~l-- 688 (876)
T 4ecn_A 626 --------------FSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI-QKF-- 688 (876)
T ss_dssp --------------CCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC-CSC--
T ss_pred --------------CcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC-Ccc--
Confidence 4444333344332210 13477777777765443321110002 234788888887752 211
Q ss_pred CCCcc-ccccccceeecccccccccccccccccC-CCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccc
Q 003193 493 SDGRV-GTFPLLESLFLHNLINLEKVCDGKVRLN-EDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTN 570 (840)
Q Consensus 493 ~~~~~-~~~~~L~~L~l~~~~~L~~~~~~~~~~~-~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~ 570 (840)
+... ..+++|+.|+++++ .+..++...+... .....+++|+.|++++| +++.+|.......+++|+.|++++|.
T Consensus 689 -p~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~- 764 (876)
T 4ecn_A 689 -PTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNC- 764 (876)
T ss_dssp -CHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSC-
T ss_pred -CHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCC-
Confidence 1111 35677888888774 4555543322100 00123447888888876 56666532111377888888888764
Q ss_pred cceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCc
Q 003193 571 LKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSL 650 (840)
Q Consensus 571 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L 650 (840)
+..++. .+..+++|+.|++++++.+.. +.-....+..+..+++|
T Consensus 765 L~~lp~-------------~l~~L~~L~~L~Ls~N~~ls~-----------------------N~l~~~ip~~l~~L~~L 808 (876)
T 4ecn_A 765 FSSFPT-------------QPLNSSQLKAFGIRHQRDAEG-----------------------NRILRQWPTGITTCPSL 808 (876)
T ss_dssp CSSCCC-------------GGGGCTTCCEEECCCCBCTTC-----------------------CBCCCCCCTTGGGCSSC
T ss_pred CCccch-------------hhhcCCCCCEEECCCCCCccc-----------------------ccccccChHHHhcCCCC
Confidence 333332 344778888888877552211 00001122334567788
Q ss_pred ceEecccccchhhcccCCccccccCCCceEEEecccCCccee
Q 003193 651 KKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFL 692 (840)
Q Consensus 651 ~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 692 (840)
+.|+|++|.+..+|.... ++|+.|+|++|+ +..+
T Consensus 809 ~~L~Ls~N~L~~Ip~~l~-------~~L~~LdLs~N~-l~~i 842 (876)
T 4ecn_A 809 IQLQIGSNDIRKVDEKLT-------PQLYILDIADNP-NISI 842 (876)
T ss_dssp CEEECCSSCCCBCCSCCC-------SSSCEEECCSCT-TCEE
T ss_pred CEEECCCCCCCccCHhhc-------CCCCEEECCCCC-CCcc
Confidence 888888887766655421 678888887765 4444
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=7.8e-28 Score=281.46 Aligned_cols=518 Identities=18% Similarity=0.173 Sum_probs=315.1
Q ss_pred cCccchhhhhhccCCCcEEEeccCCcccCCcc-c-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh
Q 003193 197 NVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS 274 (840)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~ 274 (840)
.+..+..+|...+..+++|++++|.+..++.. + ++++|++|++++|.+. .+++..|.++++|++|+|++|+++.+|.
T Consensus 39 ~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 39 MELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp TTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 44567777877888899999999999888753 3 7899999999988876 4666667889999999999999988875
Q ss_pred -hhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcc--cChhhcCCCCCCEEEccCCCCCCccCcccccCC
Q 003193 275 -SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNL 349 (840)
Q Consensus 275 -~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L 349 (840)
.|.++++|++|++++|.++. +..++++++|++|++++|.++. +|..++.+++|++|++++ +.+..+++..+..+
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVL 196 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHHH
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC-ccccccccccccch
Confidence 57889999999999998888 3468899999999999998874 577888899999999988 57777766556555
Q ss_pred CCCc----EEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCC-CCCc-c-cccCcceEEEEEcCcc------
Q 003193 350 TRLE----ELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQV-MPQD-L-VFVELERFRICIGDVW------ 416 (840)
Q Consensus 350 ~~L~----~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~-~~~~-~-~~~~L~~L~l~~~~~~------ 416 (840)
.+++ .++++.|.+....+ .......+..+++..+.... .... + .+..++...+..+...
T Consensus 197 ~~l~~~~~~~~ls~n~l~~i~~--------~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 268 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMNFIQP--------GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 268 (635)
T ss_dssp HTCTTCCCEEECTTCCCCEECT--------TTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred hhhhhhhhhhhcccCcccccCc--------ccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccc
Confidence 5443 56666665543221 11111223445554432210 0000 0 2333333333222111
Q ss_pred ----CCCCCccccceEEEeeCCCccc---hhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEE
Q 003193 417 ----SWSDGYETSKTLKLQLNNSTYL---GYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILH 489 (840)
Q Consensus 417 ----~~~~~~~~l~~L~l~~~~~~~~---~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~ 489 (840)
........+....+........ .........+++.+.+.++...... .+ ....+|+.|++.++.
T Consensus 269 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~---~~~~~L~~L~l~~~~---- 339 (635)
T 4g8a_A 269 KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DF---SYNFGWQHLELVNCK---- 339 (635)
T ss_dssp CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GG---GSCCCCSEEEEESCE----
T ss_pred cccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--cc---ccchhhhhhhccccc----
Confidence 0111222233333322111100 0001112345556655554432211 11 345667777777664
Q ss_pred EEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEeccc
Q 003193 490 ILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCT 569 (840)
Q Consensus 490 ~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~ 569 (840)
+. ......++.|+.+.+.+... ... . ....+++|+.|++++..--...........+.+|+.+++..+.
T Consensus 340 ~~--~~~~~~l~~L~~l~l~~n~~-~~~----~----~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~ 408 (635)
T 4g8a_A 340 FG--QFPTLKLKSLKRLTFTSNKG-GNA----F----SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG 408 (635)
T ss_dssp ES--SCCCCBCTTCCEEEEESCCS-CCB----C----CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS
T ss_pred cc--CcCcccchhhhhcccccccC-CCC----c----ccccccccccchhhccccccccccccchhhhhhhhhhhccccc
Confidence 11 11123556666666665321 111 1 1345677888887764322111111233556778888777654
Q ss_pred ccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCC
Q 003193 570 NLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPS 649 (840)
Q Consensus 570 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~ 649 (840)
..... .....+++|+.+.+..+......+.. ......++..+....+.-..........+++
T Consensus 409 ~~~~~--------------~~~~~l~~L~~l~l~~~~~~~~~~~~----~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~ 470 (635)
T 4g8a_A 409 VITMS--------------SNFLGLEQLEHLDFQHSNLKQMSEFS----VFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 470 (635)
T ss_dssp EEEEC--------------SCCTTCTTCCEEECTTSEEESTTSSC----TTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred ccccc--------------ccccccccccchhhhhcccccccccc----ccccccccccccccccccccccccccccchh
Confidence 32211 12336777888877766544433221 1223334444444433333333344567899
Q ss_pred cceEeccccc-chhhcccCCccccccCCCceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccC
Q 003193 650 LKKLKLSSIN-VEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDN 728 (840)
Q Consensus 650 L~~L~l~~c~-l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~ 728 (840)
|+.|++++|. ...+..+.+ ..+++|+.|++++| +++.+++ ..+.++++|++|+++++ +++.+. +..+..
T Consensus 471 L~~L~Ls~N~~~~~~~~~~~----~~l~~L~~L~Ls~N-~L~~l~~-~~f~~l~~L~~L~Ls~N-~l~~l~--~~~~~~- 540 (635)
T 4g8a_A 471 LEVLKMAGNSFQENFLPDIF----TELRNLTFLDLSQC-QLEQLSP-TAFNSLSSLQVLNMSHN-NFFSLD--TFPYKC- 540 (635)
T ss_dssp CCEEECTTCEEGGGEECSCC----TTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTS-CCCBCC--CGGGTT-
T ss_pred hhhhhhhhcccccccCchhh----hhccccCEEECCCC-ccCCcCh-HHHcCCCCCCEEECCCC-cCCCCC--hhHHhC-
Confidence 9999999994 444443333 57799999999887 7888855 45889999999999995 566662 233333
Q ss_pred ccccccccccccccccCCcceeecCCCCccC-CCcceEEeccCCCcceeeccccc
Q 003193 729 MIEMVFPKLVSLQLSHLPKLTRFGIGDSVEF-PSLCQLQIACCPNLKIFICSCTE 782 (840)
Q Consensus 729 ~~~~~l~sL~~L~i~~c~~L~~l~~~~~~~l-~sL~~L~i~~C~~L~~l~~~~~~ 782 (840)
+++|+.|+++++ +++.++...+.++ ++|+.|++.+.|-- |+|.-
T Consensus 541 -----l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~~----C~C~~ 585 (635)
T 4g8a_A 541 -----LNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFA----CTCEH 585 (635)
T ss_dssp -----CTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCBC----CSGGG
T ss_pred -----CCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCCc----ccCCc
Confidence 899999999998 5777776665566 68999999988743 66653
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=4.6e-29 Score=289.05 Aligned_cols=447 Identities=14% Similarity=0.108 Sum_probs=263.9
Q ss_pred CcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCC-------------CCChhh---------------------c
Q 003193 232 LKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-------------SLPSSL---------------------G 277 (840)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-------------~lp~~l---------------------~ 277 (840)
.+++.|++.++.+.+.+|+.+ +++++|++|++++|.+. .+|... +
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcCChHH-hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 578999999999999999766 89999999999999651 111110 0
Q ss_pred -------------------CCCCCCEEEcc--CCccCC-cccccCCCCCCEEeecCCCCcc------------------c
Q 003193 278 -------------------CLINLRTLSLE--NCLVVD-VAIIGDLKKLEILSLKHSSIEQ------------------L 317 (840)
Q Consensus 278 -------------------~l~~L~~L~L~--~~~~~~-~~~i~~L~~L~~L~l~~~~l~~------------------l 317 (840)
....++.+.+. +|.++. |..++++++|++|++++|.++. +
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 01112222222 345555 6778888888888888888887 8
Q ss_pred Chhhc--CCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCc-ccc-eecCCCCCCcccccC------CCCCCeEE
Q 003193 318 PREIG--QLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF-TQW-KVEGQSNASLGELKQ------LSRLTTLE 387 (840)
Q Consensus 318 p~~i~--~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~-~~~-~~~~~~~~~l~~l~~------l~~L~~L~ 387 (840)
|..++ ++++|++|++++|...+.+|.. ++++++|++|++++|. +.. ..+ ..+.. +++|+.|+
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~~~~lp-------~~~~~L~~~~~l~~L~~L~ 311 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQLK-------DDWQALADAPVGEKIQIIY 311 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSCHHHHH-------HHHHHHHHSGGGGTCCEEE
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCccccch-------HHHHhhhccccCCCCCEEE
Confidence 88888 8888888888887666777765 7888888888888886 543 222 23333 37888888
Q ss_pred EecCCCCCCCC--cc-cccCcceEEEEEcCccCCCCCccccceEEEeeCCCc-cchhhHHHHHhcccceeeccccccccc
Q 003193 388 VHIPDAQVMPQ--DL-VFVELERFRICIGDVWSWSDGYETSKTLKLQLNNST-YLGYGMKMLLKRTEDLHLDELAGFKNV 463 (840)
Q Consensus 388 l~~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~ 463 (840)
+++|.+..+|. .+ .+++|+.|++. .+... .+| .+. .+++|+.|++++|... .+
T Consensus 312 L~~n~l~~ip~~~~l~~l~~L~~L~L~--------------------~N~l~g~ip-~~~-~l~~L~~L~L~~N~l~-~l 368 (636)
T 4eco_A 312 IGYNNLKTFPVETSLQKMKKLGMLECL--------------------YNQLEGKLP-AFG-SEIKLASLNLAYNQIT-EI 368 (636)
T ss_dssp CCSSCCSSCCCHHHHTTCTTCCEEECC--------------------SCCCEEECC-CCE-EEEEESEEECCSSEEE-EC
T ss_pred CCCCcCCccCchhhhccCCCCCEEeCc--------------------CCcCccchh-hhC-CCCCCCEEECCCCccc-cc
Confidence 88887776665 32 44444444433 32222 222 111 1467777777776544 55
Q ss_pred cccccchhhccc-ccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccc-cCCCCcccCCccEEEEec
Q 003193 464 VHELDDEEGFAR-LRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVR-LNEDDKSFSNLRIIKVEG 541 (840)
Q Consensus 464 ~~~l~~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~-~~~~~~~~~~L~~L~l~~ 541 (840)
|..+ ..+++ |++|++++|. +..++.. .....+++|+.|+++++.--...+. .++ .....-.+++|+.|++++
T Consensus 369 p~~l---~~l~~~L~~L~Ls~N~-l~~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~~~~~~~~~~~L~~L~Ls~ 442 (636)
T 4eco_A 369 PANF---CGFTEQVENLSFAHNK-LKYIPNI-FDAKSVSVMSAIDFSYNEIGSVDGK-NFDPLDPTPFKGINVSSINLSN 442 (636)
T ss_dssp CTTS---EEECTTCCEEECCSSC-CSSCCSC-CCTTCSSCEEEEECCSSCTTTTTTC-SSCTTCSSCCCCCCEEEEECCS
T ss_pred cHhh---hhhcccCcEEEccCCc-Ccccchh-hhhcccCccCEEECcCCcCCCcchh-hhcccccccccCCCCCEEECcC
Confidence 5555 56777 8888888776 2222211 1112344778888877532211111 000 000011456788888887
Q ss_pred CCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCcc
Q 003193 542 CHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNT 621 (840)
Q Consensus 542 c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~ 621 (840)
+ .++.+|+ .....+++|++|++++|.- ..++...... .......+++|++|+++++. ++.++..
T Consensus 443 N-~l~~lp~-~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~-----~~~~~~~l~~L~~L~Ls~N~-l~~lp~~------- 506 (636)
T 4eco_A 443 N-QISKFPK-ELFSTGSPLSSINLMGNML-TEIPKNSLKD-----ENENFKNTYLLTSIDLRFNK-LTKLSDD------- 506 (636)
T ss_dssp S-CCCSCCT-HHHHTTCCCSEEECCSSCC-SBCCSSSSEE-----TTEECTTGGGCCEEECCSSC-CCBCCGG-------
T ss_pred C-ccCcCCH-HHHccCCCCCEEECCCCCC-CCcCHHHhcc-----ccccccccCCccEEECcCCc-CCccChh-------
Confidence 5 4556643 4456678888888887653 3443211100 00001123477777777763 3343322
Q ss_pred CCCCCcccccCCCCCccccccccc--ccCCcceEecccccchhhcccCCccccccCCCceEEEecc------cCCcceee
Q 003193 622 QGSNPGIIAEGDPKDFTSLFNERV--VFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEK------CGRLKFLF 693 (840)
Q Consensus 622 ~~~~l~~l~~~~~~~~~~~~~~~~--~l~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~------C~~L~~l~ 693 (840)
.. .+++|++|++++|.++.+|.. ...+++|+.|++++ +.-...+|
T Consensus 507 ----------------------~~~~~l~~L~~L~Ls~N~l~~ip~~-----~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 507 ----------------------FRATTLPYLVGIDLSYNSFSKFPTQ-----PLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp ----------------------GSTTTCTTCCEEECCSSCCSSCCCG-----GGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred ----------------------hhhccCCCcCEEECCCCCCCCcChh-----hhcCCCCCEEECCCCcccccCcccccCh
Confidence 12 577888888888877665432 23567888888854 22233333
Q ss_pred chhhHhhhcccceeeecccccchhhhccCcccccCccccccccccccccccCCcceeecCCCC--------ccCCCcceE
Q 003193 694 SSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDS--------VEFPSLCQL 765 (840)
Q Consensus 694 ~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~~~~~--------~~l~sL~~L 765 (840)
..+..+++|++|++++|. +..+ |..+ .++|+.|++++|+ ++++..... ..+...+..
T Consensus 560 --~~l~~l~~L~~L~Ls~N~-l~~i---p~~~--------~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~~~ 624 (636)
T 4eco_A 560 --EGITLCPSLTQLQIGSND-IRKV---NEKI--------TPNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDKTQ 624 (636)
T ss_dssp --TTGGGCSSCCEEECCSSC-CCBC---CSCC--------CTTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCTTS
T ss_pred --HHHhcCCCCCEEECCCCc-CCcc---CHhH--------hCcCCEEECcCCC-CccccHHhcchhhhcccceeecCCcc
Confidence 236677788888888755 3555 5543 4678888888775 444432221 122333555
Q ss_pred EeccCCCcc
Q 003193 766 QIACCPNLK 774 (840)
Q Consensus 766 ~i~~C~~L~ 774 (840)
+|.+|+.|+
T Consensus 625 ~i~~C~~L~ 633 (636)
T 4eco_A 625 DIRGCDALD 633 (636)
T ss_dssp EEESCGGGC
T ss_pred ccCCCcccc
Confidence 777777764
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=4.6e-29 Score=293.20 Aligned_cols=426 Identities=16% Similarity=0.138 Sum_probs=255.3
Q ss_pred CcceeEeeccCccccCCCchhhcCCCCCcEEEc-CCCCCCCC-Chh----------------------------------
Q 003193 232 LKLKLFLFFTENLSLQIPDPFFEGMTELRVLDL-TGFRFHSL-PSS---------------------------------- 275 (840)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l-~~~~~~~l-p~~---------------------------------- 275 (840)
.++..|+++++.+.+.+|+.+ +++++|++|+| ++|.+... |-.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l-~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAI-GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGG-GGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHH-hccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 578889999999988888766 88999999999 66643210 000
Q ss_pred ---------------h--cCCCCCCEEEccC--CccCC-cccccCCCCCCEEeecCCCCcc------------------c
Q 003193 276 ---------------L--GCLINLRTLSLEN--CLVVD-VAIIGDLKKLEILSLKHSSIEQ------------------L 317 (840)
Q Consensus 276 ---------------l--~~l~~L~~L~L~~--~~~~~-~~~i~~L~~L~~L~l~~~~l~~------------------l 317 (840)
+ .....++.+.+.. |.++. |..++++++|++|++++|.++. +
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0 1112233333332 45555 7778888888888888888887 8
Q ss_pred Chhhc--CCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCc-ccc-eecCCCCCCcc----cccCCCCCCeEEEe
Q 003193 318 PREIG--QLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF-TQW-KVEGQSNASLG----ELKQLSRLTTLEVH 389 (840)
Q Consensus 318 p~~i~--~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~-~~~-~~~~~~~~~l~----~l~~l~~L~~L~l~ 389 (840)
|..++ ++++|++|++++|...+.+|.. ++++++|++|++++|. +.. .++ ..+. .+..+++|+.|+++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP----~~i~~L~~~~~~l~~L~~L~Ls 556 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLK----ADWTRLADDEDTGPKIQIFYMG 556 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHHHHH----HHHHHHHHCTTTTTTCCEEECC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcccccch----HHHHhhhhcccccCCccEEEee
Confidence 88877 8888888888887667777765 7888888888888886 543 222 1111 23355688888888
Q ss_pred cCCCCCCCC--cc-cccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeecccccccccccc
Q 003193 390 IPDAQVMPQ--DL-VFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHE 466 (840)
Q Consensus 390 ~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ 466 (840)
+|.+..+|. .+ .+++|+.|++ +.+....+| .+. .+++|+.|++++|... .+|..
T Consensus 557 ~N~L~~ip~~~~l~~L~~L~~L~L--------------------s~N~l~~lp-~~~-~L~~L~~L~Ls~N~l~-~lp~~ 613 (876)
T 4ecn_A 557 YNNLEEFPASASLQKMVKLGLLDC--------------------VHNKVRHLE-AFG-TNVKLTDLKLDYNQIE-EIPED 613 (876)
T ss_dssp SSCCCBCCCHHHHTTCTTCCEEEC--------------------TTSCCCBCC-CCC-TTSEESEEECCSSCCS-CCCTT
T ss_pred CCcCCccCChhhhhcCCCCCEEEC--------------------CCCCcccch-hhc-CCCcceEEECcCCccc-cchHH
Confidence 887776665 32 3444444443 333333333 111 2567778888777654 56655
Q ss_pred ccchhhccc-ccEEEeecCCCeEEEEeCCCcccc--ccccceeecccccccccccccccccCCCCcccCCccEEEEecCC
Q 003193 467 LDDEEGFAR-LRHLHVHNGPEILHILNSDGRVGT--FPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCH 543 (840)
Q Consensus 467 l~~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~~~--~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 543 (840)
+ ..+++ |+.|++++|. +..++ ..... .++|+.|+++++.--..++. ++........++|+.|++++|
T Consensus 614 l---~~l~~~L~~L~Ls~N~-L~~lp---~~~~~~~~~~L~~L~Ls~N~l~g~ip~--l~~~l~~~~~~~L~~L~Ls~N- 683 (876)
T 4ecn_A 614 F---CAFTDQVEGLGFSHNK-LKYIP---NIFNAKSVYVMGSVDFSYNKIGSEGRN--ISCSMDDYKGINASTVTLSYN- 683 (876)
T ss_dssp S---CEECTTCCEEECCSSC-CCSCC---SCCCTTCSSCEEEEECCSSCTTTTSSS--CSSCTTTCCCCCEEEEECCSS-
T ss_pred H---hhccccCCEEECcCCC-CCcCc---hhhhccccCCCCEEECcCCcCCCcccc--chhhhccccCCCcCEEEccCC-
Confidence 5 56777 8888888876 22222 12222 34488888877532211110 000000113457888888876
Q ss_pred CcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCC
Q 003193 544 RVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQG 623 (840)
Q Consensus 544 ~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~ 623 (840)
.++.+| ......+++|+.|++++| .+..++...... .......+++|+.|+|++| ++..++...
T Consensus 684 ~L~~lp-~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~-----~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l-------- 747 (876)
T 4ecn_A 684 EIQKFP-TELFATGSPISTIILSNN-LMTSIPENSLKP-----KDGNYKNTYLLTTIDLRFN-KLTSLSDDF-------- 747 (876)
T ss_dssp CCCSCC-HHHHHTTCCCSEEECCSC-CCSCCCTTSSSC-----TTSCCTTGGGCCEEECCSS-CCCCCCGGG--------
T ss_pred cCCccC-HHHHccCCCCCEEECCCC-cCCccChHHhcc-----ccccccccCCccEEECCCC-CCccchHHh--------
Confidence 455664 344567788888888886 344444321110 0001223457777877776 344443321
Q ss_pred CCCcccccCCCCCcccccccccccCCcceEecccccchhhcccCCccccccCCCceEEEeccc-----CCc-ceeechhh
Q 003193 624 SNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKC-----GRL-KFLFSSSM 697 (840)
Q Consensus 624 ~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C-----~~L-~~l~~~~~ 697 (840)
....+++|+.|+|++|.++.+|.. ...+++|+.|+++++ +++ ..+| ..
T Consensus 748 -------------------~~~~l~~L~~L~Ls~N~L~~lp~~-----l~~L~~L~~L~Ls~N~~ls~N~l~~~ip--~~ 801 (876)
T 4ecn_A 748 -------------------RATTLPYLSNMDVSYNCFSSFPTQ-----PLNSSQLKAFGIRHQRDAEGNRILRQWP--TG 801 (876)
T ss_dssp -------------------STTTCTTCCEEECCSSCCSSCCCG-----GGGCTTCCEEECCCCBCTTCCBCCCCCC--TT
T ss_pred -------------------hhccCCCcCEEEeCCCCCCccchh-----hhcCCCCCEEECCCCCCcccccccccCh--HH
Confidence 001477888888888877665332 246678888888652 233 3332 33
Q ss_pred HhhhcccceeeecccccchhhhccCcccccCccccccccccccccccCCcceee
Q 003193 698 VNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRF 751 (840)
Q Consensus 698 ~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l 751 (840)
+.++++|+.|++++|. +..+ |..+ .++|+.|+|++|+ +..+
T Consensus 802 l~~L~~L~~L~Ls~N~-L~~I---p~~l--------~~~L~~LdLs~N~-l~~i 842 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSND-IRKV---DEKL--------TPQLYILDIADNP-NISI 842 (876)
T ss_dssp GGGCSSCCEEECCSSC-CCBC---CSCC--------CSSSCEEECCSCT-TCEE
T ss_pred HhcCCCCCEEECCCCC-CCcc---CHhh--------cCCCCEEECCCCC-CCcc
Confidence 6677788888888765 3555 5543 4678888887776 4333
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=272.15 Aligned_cols=435 Identities=14% Similarity=0.081 Sum_probs=282.7
Q ss_pred ccchhhhhhccCCCcEEEeccCCcccCCc-c-cCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhh
Q 003193 199 ADLKEELDKIDEAPTAISIPFRGIYELPE-R-LGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSL 276 (840)
Q Consensus 199 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l 276 (840)
..+..+|....+++++|++++|.+..++. . ..+++|++|++++|.+....|. .|.++++|++|++++|.++.+|..
T Consensus 10 n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~- 87 (520)
T 2z7x_B 10 NGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLSHNKLVKISCH- 87 (520)
T ss_dssp SCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEECCSSCCCEEECC-
T ss_pred CCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEecCCCceeecCcc-
Confidence 34556666566899999999999988874 3 3799999999999998754444 459999999999999999999877
Q ss_pred cCCCCCCEEEccCCccCC---cccccCCCCCCEEeecCCCCcccChhhcCCCCC--CEEEccCCCC--CCccCcccccCC
Q 003193 277 GCLINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCL--KLLDLSNCSK--LKEIRPNVISNL 349 (840)
Q Consensus 277 ~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L--~~L~L~~~~~--l~~~p~~~l~~L 349 (840)
.+++|++|++++|.+.. |..++++++|++|++++|.++. ..+..+++| ++|++++|.. ....|.. ++.+
T Consensus 88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~-l~~l 163 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG-LQDF 163 (520)
T ss_dssp -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT-TTTC
T ss_pred -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc-cccc
Confidence 89999999999999876 5799999999999999999886 457788888 9999999644 3444433 5554
Q ss_pred CC-CcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCC-------CC-CCCCcccccCcceEEEEEcCccCC--
Q 003193 350 TR-LEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPD-------AQ-VMPQDLVFVELERFRICIGDVWSW-- 418 (840)
Q Consensus 350 ~~-L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~-------~~-~~~~~~~~~~L~~L~l~~~~~~~~-- 418 (840)
+. .-.+++++|....... -..+.++++|+.|++++|. .. .++.-..+++|+.|.+..+.....
T Consensus 164 ~~~~l~l~l~~n~~~~~~~------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~ 237 (520)
T 2z7x_B 164 NTESLHIVFPTNKEFHFIL------DVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237 (520)
T ss_dssp CEEEEEEECCSSSCCCCCC------CCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHH
T ss_pred ccceEEEEeccCcchhhhh------hhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHH
Confidence 42 2234444444322111 1233445566666666553 10 111111445555555543321110
Q ss_pred -----CCCccccceEEEeeCCCc-cchhhHH----HHHhcccceeecccccccccc-ccccchhhc---ccccEEEeecC
Q 003193 419 -----SDGYETSKTLKLQLNNST-YLGYGMK----MLLKRTEDLHLDELAGFKNVV-HELDDEEGF---ARLRHLHVHNG 484 (840)
Q Consensus 419 -----~~~~~~l~~L~l~~~~~~-~~~~~~~----~~l~~L~~L~L~~~~~~~~~~-~~l~~~~~l---~~L~~L~l~~~ 484 (840)
.....+++.|+++++... .+|.++. ..+++|+.+++.++.. .+| ..+ ..+ ++|+.|+++++
T Consensus 238 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~---~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYI---YEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp HHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHH---HHHHHTCCCSEEEEESS
T ss_pred HHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhh---hcccccCceeEEEcCCC
Confidence 001235666666655433 3443331 1245666666666554 233 122 222 45778887777
Q ss_pred CCeEEEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccch-hHHhhcccccEE
Q 003193 485 PEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPF-SLVKNLLQLQKV 563 (840)
Q Consensus 485 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~-~~~~~l~~L~~L 563 (840)
... . ......+++|++|+++++. +..... .....+++|+.|++++|. ++.++.. ..+..+++|++|
T Consensus 313 ~l~-~----~~~~~~l~~L~~L~Ls~n~-l~~~~~------~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L 379 (520)
T 2z7x_B 313 RMV-H----MLCPSKISPFLHLDFSNNL-LTDTVF------ENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQL 379 (520)
T ss_dssp CCC-C----CCCCSSCCCCCEEECCSSC-CCTTTT------TTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEE
T ss_pred ccc-c----ccchhhCCcccEEEeECCc-cChhhh------hhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEE
Confidence 521 1 1111467788888888753 332111 124578899999998864 5544221 235788999999
Q ss_pred EEecccccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCccccccc
Q 003193 564 KVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNE 643 (840)
Q Consensus 564 ~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 643 (840)
++++|.-...++.. .+..+++|++|+++++.--..++...
T Consensus 380 ~Ls~N~l~~~l~~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~l---------------------------- 419 (520)
T 2z7x_B 380 DISQNSVSYDEKKG------------DCSWTKSLLSLNMSSNILTDTIFRCL---------------------------- 419 (520)
T ss_dssp ECCSSCCBCCGGGC------------SCCCCTTCCEEECCSSCCCGGGGGSC----------------------------
T ss_pred ECCCCcCCcccccc------------hhccCccCCEEECcCCCCCcchhhhh----------------------------
Confidence 99987644334321 23467899999999875333332211
Q ss_pred ccccCCcceEecccccchhhcccCCccccccCCCceEEEecccCCcceeechhhHhhhcccceeeecccc
Q 003193 644 RVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCK 713 (840)
Q Consensus 644 ~~~l~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~ 713 (840)
.++|+.|++++|+++.+|... ..+++|++|++++| +++.+|.. .+..+++|++|++++++
T Consensus 420 ---~~~L~~L~Ls~N~l~~ip~~~-----~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 420 ---PPRIKVLDLHSNKIKSIPKQV-----VKLEALQELNVASN-QLKSVPDG-IFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp ---CTTCCEEECCSSCCCCCCGGG-----GGCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC
T ss_pred ---cccCCEEECCCCcccccchhh-----hcCCCCCEEECCCC-cCCccCHH-HhccCCcccEEECcCCC
Confidence 268999999999888766433 36689999999776 68887653 57788999999999866
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=3.8e-27 Score=270.19 Aligned_cols=461 Identities=16% Similarity=0.134 Sum_probs=267.7
Q ss_pred CcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCC
Q 003193 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENC 290 (840)
Q Consensus 212 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~ 290 (840)
.++++++++++..+|..+. +++++|++++|.+. .++...|.++++|++|++++|.++.+ |..|+++++|++|++++|
T Consensus 33 ~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CcEEEcCCCCCccCCCCCC-CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 3778888888877776543 67777777777765 34444457777777777777777765 566777777777777777
Q ss_pred ccCC-cccccCCCCCCEEeecCCCCcccC--hhhcCCCCCCEEEccCCCCCCccCcccccCCCCC--cEEEccCCcc--c
Q 003193 291 LVVD-VAIIGDLKKLEILSLKHSSIEQLP--REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL--EELYMGNSFT--Q 363 (840)
Q Consensus 291 ~~~~-~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L--~~L~l~~~~~--~ 363 (840)
.++. |.. .+++|++|++++|.++.+| ..++++++|++|++++ +.+.... ++.+++| ++|++++|.+ .
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~-n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA-AKFRQLD---LLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEEC-SBCCTTT---TGGGTTSCEEEEEEEESSCCCC
T ss_pred cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCC-CccccCc---hhhhhhceeeEEEeeccccccc
Confidence 7776 444 6777777777777777654 5677777777777777 4454432 3444444 7777777654 2
Q ss_pred ceecCCCCCCcccccCCCCCC--eEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCC--Cccch
Q 003193 364 WKVEGQSNASLGELKQLSRLT--TLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNN--STYLG 439 (840)
Q Consensus 364 ~~~~~~~~~~l~~l~~l~~L~--~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~--~~~~~ 439 (840)
... ...+..+.. + .++++.|.......... .....+++.++++.+. ...++
T Consensus 185 ~~~-------~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~-----------------~~~l~~L~~L~l~~n~~~~~~l~ 239 (562)
T 3a79_B 185 GGE-------TESLQIPNT-TVLHLVFHPNSLFSVQVNMS-----------------VNALGHLQLSNIKLNDENCQRLM 239 (562)
T ss_dssp SSS-------CCEEEECCE-EEEEEEECSSSCCCCCCEEE-----------------ESSEEEEEEEEEECCSTTHHHHH
T ss_pred ccC-------cccccccCc-ceEEEEecCccchhhhhhhc-----------------ccccceEEEecccccccccchHH
Confidence 111 122332221 1 22333333222111111 1223344555555542 11122
Q ss_pred hhHH--HHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccc-c
Q 003193 440 YGMK--MLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLE-K 516 (840)
Q Consensus 440 ~~~~--~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~-~ 516 (840)
..+. ..+++|+.|++.++.........+.+....++|++|++++|.-...++.... ....++|+.|.+.++..-. .
T Consensus 240 ~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~-~~~~~~L~~L~~~~~~~~~~~ 318 (562)
T 3a79_B 240 TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF-TYSETALKSLMIEHVKNQVFL 318 (562)
T ss_dssp HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCC-CCCSCSCCEEEEEEEEECCCS
T ss_pred HHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhh-hcccccchheehhhcccceee
Confidence 2221 1235666677766543222111111002234788888887751111111100 0012455555554432211 1
Q ss_pred ccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccc
Q 003193 517 VCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRK 596 (840)
Q Consensus 517 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 596 (840)
++...+. .....++|+.|+++++. +...+ ....+++|++|+++++.--..++ ..+..+++
T Consensus 319 ~p~~~~~---~~~~~~~L~~L~l~~n~-~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-------------~~~~~l~~ 378 (562)
T 3a79_B 319 FSKEALY---SVFAEMNIKMLSISDTP-FIHMV---CPPSPSSFTFLNFTQNVFTDSVF-------------QGCSTLKR 378 (562)
T ss_dssp SCHHHHH---HHHHTCCCSEEEEESSC-CCCCC---CCSSCCCCCEEECCSSCCCTTTT-------------TTCCSCSS
T ss_pred cChhhhh---hhhccCcceEEEccCCC-ccccc---CccCCCCceEEECCCCccccchh-------------hhhcccCC
Confidence 1100000 00012468888888764 33221 12467788888888765332221 13446778
Q ss_pred cceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecccccchh-hcccCCccccccC
Q 003193 597 LHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEK-IWLNSFSAIESWG 675 (840)
Q Consensus 597 L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~-~~~~~~~~~~~~l 675 (840)
|++|++.++ .++.++. .+..+..+++|++|++++|.++. ++.+.+ ..+
T Consensus 379 L~~L~L~~N-~l~~~~~--------------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~----~~l 427 (562)
T 3a79_B 379 LQTLILQRN-GLKNFFK--------------------------VALMTKNMSSLETLDVSLNSLNSHAYDRTC----AWA 427 (562)
T ss_dssp CCEEECCSS-CCCBTTH--------------------------HHHTTTTCTTCCEEECTTSCCBSCCSSCCC----CCC
T ss_pred CCEEECCCC-CcCCccc--------------------------chhhhcCCCCCCEEECCCCcCCCccChhhh----cCc
Confidence 888888775 3333211 11223568999999999998877 665544 467
Q ss_pred CCceEEEecccCCcceeechhhHhhh-cccceeeecccccchhhhccCcccccCccccccccccccccccCCcceeecCC
Q 003193 676 KNLTKLTVEKCGRLKFLFSSSMVNGL-EQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIG 754 (840)
Q Consensus 676 ~~L~~L~i~~C~~L~~l~~~~~~~~l-~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~~~ 754 (840)
++|+.|++++|. ++.. ....+ ++|++|++++| .++.+ |.+... +++|+.|+++++ +++.+|..
T Consensus 428 ~~L~~L~l~~n~-l~~~----~~~~l~~~L~~L~L~~N-~l~~i---p~~~~~------l~~L~~L~L~~N-~l~~l~~~ 491 (562)
T 3a79_B 428 ESILVLNLSSNM-LTGS----VFRCLPPKVKVLDLHNN-RIMSI---PKDVTH------LQALQELNVASN-QLKSVPDG 491 (562)
T ss_dssp TTCCEEECCSSC-CCGG----GGSSCCTTCSEEECCSS-CCCCC---CTTTTS------SCCCSEEECCSS-CCCCCCTT
T ss_pred ccCCEEECCCCC-CCcc----hhhhhcCcCCEEECCCC-cCccc---ChhhcC------CCCCCEEECCCC-CCCCCCHH
Confidence 999999998875 4432 12334 68999999997 67776 666654 899999999998 58888875
Q ss_pred CCccCCCcceEEeccCCCc
Q 003193 755 DSVEFPSLCQLQIACCPNL 773 (840)
Q Consensus 755 ~~~~l~sL~~L~i~~C~~L 773 (840)
.+..+++|+.|++.++|--
T Consensus 492 ~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 492 VFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp STTTCTTCCCEECCSCCBC
T ss_pred HHhcCCCCCEEEecCCCcC
Confidence 4568899999999998743
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=3e-26 Score=267.96 Aligned_cols=497 Identities=15% Similarity=0.120 Sum_probs=307.2
Q ss_pred EEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-hhcCCCCCCEEEccCCcc
Q 003193 214 AISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLV 292 (840)
Q Consensus 214 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~~ 292 (840)
..+-++.++..+|..+. +.+++|++++|.+. .+|+..|.++++|++|+|++|.++.+|+ +|.++++|++|+|++|.+
T Consensus 35 ~~~c~~~~l~~vP~~lp-~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEECCCCCcCccCCCCC-cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 44455556778887552 47999999999887 5666667999999999999999998854 689999999999999999
Q ss_pred CC-c-ccccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccCCCCCCccC-cccccCCCCCcEEEccCCcccceecC
Q 003193 293 VD-V-AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIR-PNVISNLTRLEELYMGNSFTQWKVEG 368 (840)
Q Consensus 293 ~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p-~~~l~~L~~L~~L~l~~~~~~~~~~~ 368 (840)
+. | ..|+++++|++|++++|+++.+|. .++++++|++|++++ +.+..++ +..++.+++|++|++++|.+....+
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~- 190 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC- 190 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecccc-CccccCCCchhhccchhhhhhcccCcccccccc-
Confidence 88 4 568999999999999999999886 489999999999999 5565442 2337889999999999997764332
Q ss_pred CCCCCcccccCCCC-CCeEEEecCCCCCCCCcc-cccCcceEEEEEcCcc-----CCCCCccccceEEEeeCCCc---c-
Q 003193 369 QSNASLGELKQLSR-LTTLEVHIPDAQVMPQDL-VFVELERFRICIGDVW-----SWSDGYETSKTLKLQLNNST---Y- 437 (840)
Q Consensus 369 ~~~~~l~~l~~l~~-L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~-----~~~~~~~~l~~L~l~~~~~~---~- 437 (840)
..+..+.++.. +..++++.+.+..++... ....+..+.+..+... ..+.....++...+...... .
T Consensus 191 ---~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 267 (635)
T 4g8a_A 191 ---TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 267 (635)
T ss_dssp ---GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred ---ccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccc
Confidence 23334444432 335777777766555442 3333444444322110 11222333333333221100 0
Q ss_pred --chhhHHHHHhcccceeeccccccc---cccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeeccccc
Q 003193 438 --LGYGMKMLLKRTEDLHLDELAGFK---NVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLI 512 (840)
Q Consensus 438 --~~~~~~~~l~~L~~L~L~~~~~~~---~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 512 (840)
...........+....+....... .....+ ..+.+++.+.+.++.. .. .......+.|+.|.+.++.
T Consensus 268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~---~~~~~l~~l~~~~~~~-~~----~~~~~~~~~L~~L~l~~~~ 339 (635)
T 4g8a_A 268 EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLF---NCLTNVSSFSLVSVTI-ER----VKDFSYNFGWQHLELVNCK 339 (635)
T ss_dssp SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTT---GGGTTCSEEEEESCEE-EE----CGGGGSCCCCSEEEEESCE
T ss_pred ccccccccccccchhhhhhhhhhhcccccchhhhh---hhhccccccccccccc-cc----ccccccchhhhhhhccccc
Confidence 000000011222222222221111 111112 4456666776666541 11 1122445567777777653
Q ss_pred ccccccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccc
Q 003193 513 NLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGV 592 (840)
Q Consensus 513 ~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~ 592 (840)
+..+ + ...++.|+.+.+..... ...+. ...+++|+.++++++..-...... ....
T Consensus 340 -~~~~-----~----~~~l~~L~~l~l~~n~~-~~~~~---~~~l~~L~~L~ls~n~l~~~~~~~-----------~~~~ 394 (635)
T 4g8a_A 340 -FGQF-----P----TLKLKSLKRLTFTSNKG-GNAFS---EVDLPSLEFLDLSRNGLSFKGCCS-----------QSDF 394 (635)
T ss_dssp -ESSC-----C----CCBCTTCCEEEEESCCS-CCBCC---CCBCTTCCEEECCSSCCBEEEECC-----------HHHH
T ss_pred -ccCc-----C----cccchhhhhcccccccC-CCCcc---cccccccccchhhccccccccccc-----------cchh
Confidence 2211 1 34567778887776532 22222 235778888888775432211110 1223
Q ss_pred cccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccc-cccccccCCcceEecccccchhhcccCCccc
Q 003193 593 YFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSL-FNERVVFPSLKKLKLSSINVEKIWLNSFSAI 671 (840)
Q Consensus 593 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~ 671 (840)
..++|+.+++..+..... +. .......++.+....+...... ......+++++.++++.|.+..+..+.+
T Consensus 395 ~~~~L~~L~~~~~~~~~~-~~-----~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~--- 465 (635)
T 4g8a_A 395 GTISLKYLDLSFNGVITM-SS-----NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--- 465 (635)
T ss_dssp SCSCCCEEECCSCSEEEE-CS-----CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT---
T ss_pred hhhhhhhhhccccccccc-cc-----cccccccccchhhhhcccccccccccccccccccccccccccccccccccc---
Confidence 567788887776543222 11 1123334444443332221111 2234567889999999997776655444
Q ss_pred cccCCCceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccCccccccccccccccccCCcceee
Q 003193 672 ESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRF 751 (840)
Q Consensus 672 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l 751 (840)
..+++|+.|++++++.....++ ..+..+++|++|++++| +++.+. |..+.. +++|+.|+++++ +++.+
T Consensus 466 -~~~~~L~~L~Ls~N~~~~~~~~-~~~~~l~~L~~L~Ls~N-~L~~l~--~~~f~~------l~~L~~L~Ls~N-~l~~l 533 (635)
T 4g8a_A 466 -NGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQC-QLEQLS--PTAFNS------LSSLQVLNMSHN-NFFSL 533 (635)
T ss_dssp -TTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTS-CCCEEC--TTTTTT------CTTCCEEECTTS-CCCBC
T ss_pred -ccchhhhhhhhhhcccccccCc-hhhhhccccCEEECCCC-ccCCcC--hHHHcC------CCCCCEEECCCC-cCCCC
Confidence 4679999999998877766544 45788999999999997 466663 444444 899999999998 68888
Q ss_pred cCCCCccCCCcceEEeccCC
Q 003193 752 GIGDSVEFPSLCQLQIACCP 771 (840)
Q Consensus 752 ~~~~~~~l~sL~~L~i~~C~ 771 (840)
+...+.++++|+.|+++++.
T Consensus 534 ~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 534 DTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp CCGGGTTCTTCCEEECTTSC
T ss_pred ChhHHhCCCCCCEEECCCCc
Confidence 76666688999999999984
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=6.2e-26 Score=253.59 Aligned_cols=299 Identities=21% Similarity=0.277 Sum_probs=204.4
Q ss_pred hccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEE
Q 003193 207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~ 286 (840)
....+++.|++.++.+..+|....+++|++|++++|.+.. ++. +.++++|++|++++|.+..++. ++++++|++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 4467899999999999888876689999999999998764 444 6899999999999999998877 99999999999
Q ss_pred ccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccccee
Q 003193 287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (840)
Q Consensus 287 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 366 (840)
+++|.+...+.++++++|++|++++|.++.+|. ++++++|++|++++ .+..+++ ++++++|++|++++|.+.
T Consensus 119 L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~--- 190 (466)
T 1o6v_A 119 LFNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVS--- 190 (466)
T ss_dssp CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCC---
T ss_pred CCCCCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCC---
Confidence 999999885459999999999999999998874 89999999999974 4555554 789999999999998753
Q ss_pred cCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHH
Q 003193 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLL 446 (840)
Q Consensus 367 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l 446 (840)
.+..+..+++|+.|++++|.+...+....+++|+.|++ +++.....+. + ..+
T Consensus 191 ------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l--------------------~~n~l~~~~~-l-~~l 242 (466)
T 1o6v_A 191 ------DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL--------------------NGNQLKDIGT-L-ASL 242 (466)
T ss_dssp ------CCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEEC--------------------CSSCCCCCGG-G-GGC
T ss_pred ------CChhhccCCCCCEEEecCCcccccccccccCCCCEEEC--------------------CCCCcccchh-h-hcC
Confidence 23457788999999999887765543223344444433 3332222211 1 124
Q ss_pred hcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCC
Q 003193 447 KRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNE 526 (840)
Q Consensus 447 ~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~ 526 (840)
++|+.|++++|......+ + ..+++|++|++++|.- ..+ .....+++|+.|+++++ .++.+..
T Consensus 243 ~~L~~L~l~~n~l~~~~~--~---~~l~~L~~L~l~~n~l-~~~----~~~~~l~~L~~L~L~~n-~l~~~~~------- 304 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAP--L---SGLTKLTELKLGANQI-SNI----SPLAGLTALTNLELNEN-QLEDISP------- 304 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--G---TTCTTCSEEECCSSCC-CCC----GGGTTCTTCSEEECCSS-CCSCCGG-------
T ss_pred CCCCEEECCCCccccchh--h---hcCCCCCEEECCCCcc-Ccc----ccccCCCccCeEEcCCC-cccCchh-------
Confidence 566666666654332211 2 5566666666666641 111 11345566666666653 2332211
Q ss_pred CCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecc
Q 003193 527 DDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDC 568 (840)
Q Consensus 527 ~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c 568 (840)
...+++|+.|++++| .++.+++ +..+++|++|++++|
T Consensus 305 -~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 305 -ISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN 341 (466)
T ss_dssp -GGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS
T ss_pred -hcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCC
Confidence 335566666666665 3444433 345566666666655
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=1.1e-25 Score=258.04 Aligned_cols=440 Identities=15% Similarity=0.078 Sum_probs=264.6
Q ss_pred cCccchhhhhhccCCCcEEEeccCCcccCCc-cc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh
Q 003193 197 NVADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS 274 (840)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~ 274 (840)
.+..+..+|...++++++|++++|.+..++. .+ .+++|++|++++|.+....| +.|.++++|++|++++|.++.+|.
T Consensus 39 s~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~lp~ 117 (562)
T 3a79_B 39 SNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEYLDVSHNRLQNISC 117 (562)
T ss_dssp TTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCEEECTTSCCCEECS
T ss_pred CCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCEEECCCCcCCccCc
Confidence 3445666777677899999999999988874 33 89999999999999875444 456899999999999999999998
Q ss_pred hhcCCCCCCEEEccCCccCC---cccccCCCCCCEEeecCCCCcccChhhcCCCCC--CEEEccCCCC--CCccCccccc
Q 003193 275 SLGCLINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCL--KLLDLSNCSK--LKEIRPNVIS 347 (840)
Q Consensus 275 ~l~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L--~~L~L~~~~~--l~~~p~~~l~ 347 (840)
. .+++|++|++++|.+.. |..++++++|++|++++|.++.. .+..+++| ++|++++|.. ....|.. +.
T Consensus 118 ~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~-l~ 192 (562)
T 3a79_B 118 C--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETES-LQ 192 (562)
T ss_dssp C--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCE-EE
T ss_pred c--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCccc-cc
Confidence 7 89999999999999887 37899999999999999998863 45666666 9999999543 2333332 55
Q ss_pred CCC--CCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCC--CCCC---c-ccccCcceEEEEEcCccCC-
Q 003193 348 NLT--RLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ--VMPQ---D-LVFVELERFRICIGDVWSW- 418 (840)
Q Consensus 348 ~L~--~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~--~~~~---~-~~~~~L~~L~l~~~~~~~~- 418 (840)
.+. .| .+++++|.+.... .-..+..+++|+.++++.|... .++. . ...++|+.+.+........
T Consensus 193 ~l~~~~l-~l~l~~n~~~~~~------~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 193 IPNTTVL-HLVFHPNSLFSVQ------VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp ECCEEEE-EEEECSSSCCCCC------CEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred ccCcceE-EEEecCccchhhh------hhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence 443 12 3344444332211 1122344555666666655310 0000 0 1233444444432221100
Q ss_pred ------CCCccccceEEEeeCCCc-cchhhHHH-HHhcccceeeccccccc-ccc-ccccchhhcccccEEEeecCCCeE
Q 003193 419 ------SDGYETSKTLKLQLNNST-YLGYGMKM-LLKRTEDLHLDELAGFK-NVV-HELDDEEGFARLRHLHVHNGPEIL 488 (840)
Q Consensus 419 ------~~~~~~l~~L~l~~~~~~-~~~~~~~~-~l~~L~~L~L~~~~~~~-~~~-~~l~~~~~l~~L~~L~l~~~~~l~ 488 (840)
.....+++.|+++.+... .+|.++.. ..++|+.|.+.++.... .++ ..+...-..++|++|+++++.-.
T Consensus 266 ~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~- 344 (562)
T 3a79_B 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI- 344 (562)
T ss_dssp HHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC-
T ss_pred HHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc-
Confidence 001124555555554332 23332210 01233333333322111 111 01100001245777777776521
Q ss_pred EEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccch-hHHhhcccccEEEEec
Q 003193 489 HILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPF-SLVKNLLQLQKVKVTD 567 (840)
Q Consensus 489 ~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~-~~~~~l~~L~~L~i~~ 567 (840)
. ......+++|++|+++++. +..... .....+++|+.|+++++ +++.+++. ..+..+++|++|++++
T Consensus 345 ~----~~~~~~l~~L~~L~l~~n~-l~~~~~------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 345 H----MVCPPSPSSFTFLNFTQNV-FTDSVF------QGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp C----CCCCSSCCCCCEEECCSSC-CCTTTT------TTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred c----ccCccCCCCceEEECCCCc-cccchh------hhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCC
Confidence 1 0111456777777777742 332111 12456788888888875 56655322 2246778888888888
Q ss_pred ccccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCccccccccccc
Q 003193 568 CTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVF 647 (840)
Q Consensus 568 c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l 647 (840)
|.--..++.. .+..+++|++|+++++.--..++. .+
T Consensus 413 N~l~~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~--------------------------------~l 448 (562)
T 3a79_B 413 NSLNSHAYDR------------TCAWAESILVLNLSSNMLTGSVFR--------------------------------CL 448 (562)
T ss_dssp SCCBSCCSSC------------CCCCCTTCCEEECCSSCCCGGGGS--------------------------------SC
T ss_pred CcCCCccChh------------hhcCcccCCEEECCCCCCCcchhh--------------------------------hh
Confidence 7643323321 233678888888888753222221 12
Q ss_pred -CCcceEecccccchhhcccCCccccccCCCceEEEecccCCcceeechhhHhhhcccceeeecccc
Q 003193 648 -PSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCK 713 (840)
Q Consensus 648 -~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~ 713 (840)
++|++|++++|.++.+|.+.. .+++|+.|+++++ +++.+|.. .+..+++|+.|++++++
T Consensus 449 ~~~L~~L~L~~N~l~~ip~~~~-----~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 449 PPKVKVLDLHNNRIMSIPKDVT-----HLQALQELNVASN-QLKSVPDG-VFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CTTCSEEECCSSCCCCCCTTTT-----SSCCCSEEECCSS-CCCCCCTT-STTTCTTCCCEECCSCC
T ss_pred cCcCCEEECCCCcCcccChhhc-----CCCCCCEEECCCC-CCCCCCHH-HHhcCCCCCEEEecCCC
Confidence 588888888888877665432 5688888888665 67777643 46788888888888865
No 26
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=2e-24 Score=239.09 Aligned_cols=165 Identities=15% Similarity=0.155 Sum_probs=112.2
Q ss_pred ccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEc
Q 003193 208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L 287 (840)
..+++++|++++|.+..+|....+++|++|++++|.+.. +| +..+++|++|++++|.++.+| ++++++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 456778888888877776654467777777777777654 33 467777777777777777664 677777777777
Q ss_pred cCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceec
Q 003193 288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367 (840)
Q Consensus 288 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~ 367 (840)
++|.++..+ ++++++|++|++++|+++.+| ++++++|++|++++|..++.++ ++.+++|++|++++|.+..
T Consensus 114 ~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~--- 184 (457)
T 3bz5_A 114 DTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE--- 184 (457)
T ss_dssp CSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC---
T ss_pred CCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce---
Confidence 777776632 677777777777777777764 6677777777777765666552 5667777777777765432
Q ss_pred CCCCCCcccccCCCCCCeEEEecCCCC
Q 003193 368 GQSNASLGELKQLSRLTTLEVHIPDAQ 394 (840)
Q Consensus 368 ~~~~~~l~~l~~l~~L~~L~l~~~~~~ 394 (840)
+. +..+++|+.|++++|.+.
T Consensus 185 ------l~-l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 185 ------LD-VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp ------CC-CTTCTTCCEEECCSSCCS
T ss_pred ------ec-cccCCCCCEEECcCCcCC
Confidence 11 455666666666665544
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=3.5e-25 Score=247.38 Aligned_cols=174 Identities=18% Similarity=0.221 Sum_probs=105.8
Q ss_pred EEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCC-CC-ChhhcCCCCCCEEEccCCc
Q 003193 214 AISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SL-PSSLGCLINLRTLSLENCL 291 (840)
Q Consensus 214 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~l-p~~l~~l~~L~~L~L~~~~ 291 (840)
.++.+++.+..+|. -.+++++|++++|.+....|.. |.++++|++|++++|.+. .+ |..|.++++|++|++++|.
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhH-hccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 45555566666665 2356777777777665433433 467777777777777765 33 4557777777777777777
Q ss_pred cCC--cccccCCCCCCEEeecCCCCcc-cChh--hcCCCCCCEEEccCCCCCCcc-CcccccCCCCCcEEEccCCcccce
Q 003193 292 VVD--VAIIGDLKKLEILSLKHSSIEQ-LPRE--IGQLTCLKLLDLSNCSKLKEI-RPNVISNLTRLEELYMGNSFTQWK 365 (840)
Q Consensus 292 ~~~--~~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~L~~~~~l~~~-p~~~l~~L~~L~~L~l~~~~~~~~ 365 (840)
+.. |..++++++|++|++++|.++. +|.. ++++++|++|++++ +.+..+ |...++++++|++|++++|.+...
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD-NNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCS-SBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCC-CccCccCcccccCCCCcccEEeCCCCccccc
Confidence 665 5667777777777777777764 3333 67777777777777 345544 333366777777777777755432
Q ss_pred ecCCCCCCcccccCCCCCCeEEEecCCCCCC
Q 003193 366 VEGQSNASLGELKQLSRLTTLEVHIPDAQVM 396 (840)
Q Consensus 366 ~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~ 396 (840)
.+ ..+..+. ..+|+.|+++.+.+..+
T Consensus 170 ~~----~~l~~l~-~~~L~~L~l~~n~l~~~ 195 (455)
T 3v47_A 170 CE----EDLLNFQ-GKHFTLLRLSSITLQDM 195 (455)
T ss_dssp CT----TTSGGGT-TCEEEEEECTTCBCTTC
T ss_pred Ch----hhhhccc-cccccccccccCccccc
Confidence 21 1112221 13456666665554433
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=5.5e-25 Score=243.35 Aligned_cols=404 Identities=16% Similarity=0.120 Sum_probs=204.8
Q ss_pred cCCCcEEEeccCCcccCCccc-CCCcceeEeeccCccccCCCchhhcCCCC-------------CcEEEcCCCCCCCCCh
Q 003193 209 DEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTE-------------LRVLDLTGFRFHSLPS 274 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~-------------Lr~L~l~~~~~~~lp~ 274 (840)
...++.+++++|.++.+|..+ .+++|++|++++|.+.+.+|..+ +++++ +++|++++|.++.+|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 457888999999998898776 79999999999999888888776 66665 4999999999998886
Q ss_pred hhcCCCCCCEEEccCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCc
Q 003193 275 SLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLE 353 (840)
Q Consensus 275 ~l~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~ 353 (840)
. .++|++|++++|.++. |.. +.+|++|++++|.++.+|.. .++|++|++++ +.+..+| . ++++++|+
T Consensus 89 ~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~-n~l~~lp-~-~~~l~~L~ 156 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSN-NQLEKLP-E-LQNSSFLK 156 (454)
T ss_dssp C---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCS-SCCSSCC-C-CTTCTTCC
T ss_pred C---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcC-CCCCCCc-c-cCCCCCCC
Confidence 3 4789999999999888 432 47899999999998887742 27899999998 5777788 3 89999999
Q ss_pred EEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeC
Q 003193 354 ELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLN 433 (840)
Q Consensus 354 ~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~ 433 (840)
+|++++|.+.. ++ . ...+|+.|++++|.+..++....+++|+.| +++++
T Consensus 157 ~L~l~~N~l~~-lp--------~--~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L--------------------~l~~N 205 (454)
T 1jl5_A 157 IIDVDNNSLKK-LP--------D--LPPSLEFIAAGNNQLEELPELQNLPFLTAI--------------------YADNN 205 (454)
T ss_dssp EEECCSSCCSC-CC--------C--CCTTCCEEECCSSCCSSCCCCTTCTTCCEE--------------------ECCSS
T ss_pred EEECCCCcCcc-cC--------C--CcccccEEECcCCcCCcCccccCCCCCCEE--------------------ECCCC
Confidence 99999987642 11 1 124889999998887766532244444444 44443
Q ss_pred CCccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccc
Q 003193 434 NSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLIN 513 (840)
Q Consensus 434 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~ 513 (840)
....+|.. .++|+.|++++|... .++ .+ +.+++|++|++++|. +..++ ..+++|++|+++++ .
T Consensus 206 ~l~~l~~~----~~~L~~L~l~~n~l~-~lp-~~---~~l~~L~~L~l~~N~-l~~l~------~~~~~L~~L~l~~N-~ 268 (454)
T 1jl5_A 206 SLKKLPDL----PLSLESIVAGNNILE-ELP-EL---QNLPFLTTIYADNNL-LKTLP------DLPPSLEALNVRDN-Y 268 (454)
T ss_dssp CCSSCCCC----CTTCCEEECCSSCCS-SCC-CC---TTCTTCCEEECCSSC-CSSCC------SCCTTCCEEECCSS-C
T ss_pred cCCcCCCC----cCcccEEECcCCcCC-ccc-cc---CCCCCCCEEECCCCc-CCccc------ccccccCEEECCCC-c
Confidence 33333322 246777777776543 444 24 567777777777764 11111 13466777777664 2
Q ss_pred cccccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCcccccc
Q 003193 514 LEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVY 593 (840)
Q Consensus 514 L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~ 593 (840)
++.++ ..+++|+.|++++| .++.++.. .++|+.|++++|. +..++ .
T Consensus 269 l~~l~----------~~~~~L~~L~ls~N-~l~~l~~~-----~~~L~~L~l~~N~-l~~i~-----------------~ 314 (454)
T 1jl5_A 269 LTDLP----------ELPQSLTFLDVSEN-IFSGLSEL-----PPNLYYLNASSNE-IRSLC-----------------D 314 (454)
T ss_dssp CSCCC----------CCCTTCCEEECCSS-CCSEESCC-----CTTCCEEECCSSC-CSEEC-----------------C
T ss_pred ccccC----------cccCcCCEEECcCC-ccCcccCc-----CCcCCEEECcCCc-CCccc-----------------C
Confidence 33321 12356667776664 24443211 2466666666543 22221 1
Q ss_pred c-cccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecccccchhhcccCCcccc
Q 003193 594 F-RKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIE 672 (840)
Q Consensus 594 l-~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~ 672 (840)
+ ++|++|+++++. +..++. .+++|++|++++|.++.+|.
T Consensus 315 ~~~~L~~L~Ls~N~-l~~lp~--------------------------------~~~~L~~L~L~~N~l~~lp~------- 354 (454)
T 1jl5_A 315 LPPSLEELNVSNNK-LIELPA--------------------------------LPPRLERLIASFNHLAEVPE------- 354 (454)
T ss_dssp CCTTCCEEECCSSC-CSCCCC--------------------------------CCTTCCEEECCSSCCSCCCC-------
T ss_pred CcCcCCEEECCCCc-cccccc--------------------------------cCCcCCEEECCCCccccccc-------
Confidence 2 356666665532 222221 13566666666665555443
Q ss_pred ccCCCceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccCccccccccccccccccCCcceeec
Q 003193 673 SWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFG 752 (840)
Q Consensus 673 ~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~ 752 (840)
.+++|+.|+++++ +++.++.. ..++..|.. +.....+ |. .+++|+.|++++++ ++.++
T Consensus 355 -~l~~L~~L~L~~N-~l~~l~~i-----p~~l~~L~~--n~~~~~i---~~---------~~~~L~~L~ls~N~-l~~~~ 412 (454)
T 1jl5_A 355 -LPQNLKQLHVEYN-PLREFPDI-----PESVEDLRM--NSHLAEV---PE---------LPQNLKQLHVETNP-LREFP 412 (454)
T ss_dssp -CCTTCCEEECCSS-CCSSCCCC-----CTTCCEEEC--CC---------------------------------------
T ss_pred -hhhhccEEECCCC-CCCcCCCC-----hHHHHhhhh--ccccccc---cc---------ccCcCCEEECCCCc-CCccc
Confidence 1256666666544 33332110 011222221 1111222 11 15789999998885 55544
Q ss_pred CCCCccCCCcceEEeccCCCc
Q 003193 753 IGDSVEFPSLCQLQIACCPNL 773 (840)
Q Consensus 753 ~~~~~~l~sL~~L~i~~C~~L 773 (840)
.. .++|+.|.+.+|.--
T Consensus 413 ~i----P~sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 413 DI----PESVEDLRMNSERVV 429 (454)
T ss_dssp ---------------------
T ss_pred cc----hhhHhheeCcCcccC
Confidence 32 267888888887543
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=8.4e-26 Score=249.87 Aligned_cols=151 Identities=23% Similarity=0.215 Sum_probs=83.3
Q ss_pred CcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCC-CCChhhcCCCCC-------------CEEEccCCc
Q 003193 226 PERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCLINL-------------RTLSLENCL 291 (840)
Q Consensus 226 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~l~~l~~L-------------~~L~L~~~~ 291 (840)
|+.+..++|++|.+++|.+ +.+|.++ +++++|++|++++|.+. .+|.+++++.+| ++|++++|.
T Consensus 5 p~~~~~~~L~~L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 5 PRNVSNTFLQEPLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred ccccccccchhhhcccCch-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence 3445667788888888877 6777765 78888888888888776 678888777764 777777777
Q ss_pred cCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCC
Q 003193 292 VVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQS 370 (840)
Q Consensus 292 ~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 370 (840)
++. |. + .++|++|++++|.++.+|.. +++|++|++++ +.+..+|.. .++|++|++++|.+..
T Consensus 83 l~~lp~-~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~-n~l~~l~~~----~~~L~~L~L~~n~l~~------ 145 (454)
T 1jl5_A 83 LSSLPE-L--PPHLESLVASCNSLTELPEL---PQSLKSLLVDN-NNLKALSDL----PPLLEYLGVSNNQLEK------ 145 (454)
T ss_dssp CSCCCS-C--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCS-SCCSCCCSC----CTTCCEEECCSSCCSS------
T ss_pred cccCCC-C--cCCCCEEEccCCcCCccccc---cCCCcEEECCC-CccCcccCC----CCCCCEEECcCCCCCC------
Confidence 776 33 2 36777778877777777753 36777777777 456655431 1577777777775531
Q ss_pred CCCcccccCCCCCCeEEEecCCCCCCCC
Q 003193 371 NASLGELKQLSRLTTLEVHIPDAQVMPQ 398 (840)
Q Consensus 371 ~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 398 (840)
+..+.++++|+.|++++|.+..+|.
T Consensus 146 ---lp~~~~l~~L~~L~l~~N~l~~lp~ 170 (454)
T 1jl5_A 146 ---LPELQNSSFLKIIDVDNNSLKKLPD 170 (454)
T ss_dssp ---CCCCTTCTTCCEEECCSSCCSCCCC
T ss_pred ---CcccCCCCCCCEEECCCCcCcccCC
Confidence 1246677777777777776655443
No 30
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.93 E-value=1.3e-26 Score=262.60 Aligned_cols=174 Identities=13% Similarity=0.096 Sum_probs=132.4
Q ss_pred CCceEEccCCCHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHhCCCchhHHHHHHHhcCCCHHHHHHHHHHhhcCCCCCc
Q 003193 6 YSEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRKI 85 (840)
Q Consensus 6 ~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~~~~ 85 (840)
+..+|+|++|+++|||+||.++||....++++++++++|+++|+|+||||+++|+.|+.++ .+|.+.+.+..+..
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~---- 358 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESR---- 358 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHH----
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcc----
Confidence 4468999999999999999999996555688999999999999999999999999998774 23333333211100
Q ss_pred ccccccccceeecccccCchhhhhHHH-----------hccCCCCCCccCHHHHHHHHhhc--ccccccchHHHHHHHHH
Q 003193 86 QGMDADLSSIELSYEFLKCKEVKSLFQ-----------LCGLLKDGSRIAVDDLLRYVMGL--RLLTNADTLEAARNRVH 152 (840)
Q Consensus 86 ~~~~~~~~~l~lSY~~L~~~~lk~cfl-----------~~~~fp~~~~i~~~~li~~wia~--gfi~~~~~~~~~~~~~~ 152 (840)
......+++++||++||.+ +|.||+ |||+||+|+.|+ +++|+|+ ||+.........++.+.
T Consensus 359 -~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~ 432 (549)
T 2a5y_B 359 -GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD 432 (549)
T ss_dssp -CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH
T ss_pred -cHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH
Confidence 1122288999999999998 999999 999999999998 8999999 99975421111233334
Q ss_pred HHHHHHhhccccccCC--CCCceEeehhHHHHHHHHHhhce
Q 003193 153 TLIDNLKSASLLFDGD--SEDHAKMHRIIHAIAVSIAAEKL 191 (840)
Q Consensus 153 ~~~~~L~~~~l~~~~~--~~~~~~mhdli~~l~~~i~~~e~ 191 (840)
++++|+++||++... ....|+|||+||++|+.++++++
T Consensus 433 -~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 433 -RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp -HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred -HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 899999999998753 34679999999999999887765
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=6.2e-24 Score=228.02 Aligned_cols=304 Identities=16% Similarity=0.184 Sum_probs=193.8
Q ss_pred hccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEE
Q 003193 207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~ 286 (840)
...+++++++++++.+..++....+++|++|++++|.+. .++. +.++++|++|++++|.++.+| .+.++++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccchhhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence 456677888888877776665446677777777766654 2333 466777777777777766654 466777777777
Q ss_pred ccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccccee
Q 003193 287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (840)
Q Consensus 287 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 366 (840)
+++|.+...+.+.++++|++|++++|.....+..+..+++|++|++++ +.+..++. ++.+++|++|++++|.+..
T Consensus 117 l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~-- 191 (347)
T 4fmz_A 117 LNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE-SKVKDVTP--IANLTDLYSLSLNYNQIED-- 191 (347)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECTTSCCCC--
T ss_pred CcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecC-CCcCCchh--hccCCCCCEEEccCCcccc--
Confidence 777776663336677777777777763333333466777777777776 34555544 5666777777776665431
Q ss_pred cCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHH
Q 003193 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLL 446 (840)
Q Consensus 367 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l 446 (840)
+..+..+++|+.|+++++.+...+.. ..+
T Consensus 192 -------~~~~~~l~~L~~L~l~~n~l~~~~~~--------------------------------------------~~~ 220 (347)
T 4fmz_A 192 -------ISPLASLTSLHYFTAYVNQITDITPV--------------------------------------------ANM 220 (347)
T ss_dssp -------CGGGGGCTTCCEEECCSSCCCCCGGG--------------------------------------------GGC
T ss_pred -------cccccCCCccceeecccCCCCCCchh--------------------------------------------hcC
Confidence 12255566666666666554432210 114
Q ss_pred hcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCC
Q 003193 447 KRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNE 526 (840)
Q Consensus 447 ~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~ 526 (840)
++|+.|++++|.... .+. + ..+++|++|++++|. +.. ......+++|++|+++++ .+..++.
T Consensus 221 ~~L~~L~l~~n~l~~-~~~-~---~~l~~L~~L~l~~n~-l~~----~~~~~~l~~L~~L~l~~n-~l~~~~~------- 282 (347)
T 4fmz_A 221 TRLNSLKIGNNKITD-LSP-L---ANLSQLTWLEIGTNQ-ISD----INAVKDLTKLKMLNVGSN-QISDISV------- 282 (347)
T ss_dssp TTCCEEECCSSCCCC-CGG-G---TTCTTCCEEECCSSC-CCC----CGGGTTCTTCCEEECCSS-CCCCCGG-------
T ss_pred CcCCEEEccCCccCC-Ccc-h---hcCCCCCEEECCCCc-cCC----ChhHhcCCCcCEEEccCC-ccCCChh-------
Confidence 566777777665432 222 3 667888888888875 222 133467788888888875 4444421
Q ss_pred CCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCc
Q 003193 527 DDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLP 606 (840)
Q Consensus 527 ~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~ 606 (840)
...+++|+.|++++|+ ++..++ ..+..+++|++|++++|+ +..++ .+..+++|++|++.+++
T Consensus 283 -~~~l~~L~~L~L~~n~-l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~--------------~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 283 -LNNLSQLNSLFLNNNQ-LGNEDM-EVIGGLTNLTTLFLSQNH-ITDIR--------------PLASLSKMDSADFANQV 344 (347)
T ss_dssp -GGGCTTCSEEECCSSC-CCGGGH-HHHHTCTTCSEEECCSSS-CCCCG--------------GGGGCTTCSEESSSCC-
T ss_pred -hcCCCCCCEEECcCCc-CCCcCh-hHhhccccCCEEEccCCc-ccccc--------------Chhhhhccceeehhhhc
Confidence 4578899999999884 555433 446788999999999986 44332 24478999999998875
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=5e-24 Score=232.57 Aligned_cols=305 Identities=14% Similarity=0.189 Sum_probs=200.1
Q ss_pred cCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-hhhcCCCCCCEEEccCCccCC--cccccCCCCCC
Q 003193 229 LGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLE 305 (840)
Q Consensus 229 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~ 305 (840)
..+++++.+.+.++.+. .+|..+|.++++|++|++++|.++.+| ..++.+++|++|++++|.+.. +..++++++|+
T Consensus 42 ~~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 34566777777666544 466666677777777777777777654 367777777777777777766 34567777777
Q ss_pred EEeecCCCCcccChhh-cCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCC
Q 003193 306 ILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLT 384 (840)
Q Consensus 306 ~L~l~~~~l~~lp~~i-~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~ 384 (840)
+|++++|.++.+|..+ +++++|++|++++ +.+..+++..++++++|++|++++|.+.. ..+..+++|+
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------~~~~~l~~L~ 189 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTH----------VDLSLIPSLF 189 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTSSCTTCCEEECCSSCCSB----------CCGGGCTTCS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCC-CccCccChhhccCCCCCCEEECCCCcCCc----------cccccccccc
Confidence 7777777777777653 6777777777777 45666665556777777777777765432 1244556677
Q ss_pred eEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeecccccccccc
Q 003193 385 TLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVV 464 (840)
Q Consensus 385 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 464 (840)
.|++++|.+..++. ...++.++++++.....+... .++|+.|+++++.... .
T Consensus 190 ~L~l~~n~l~~~~~-----------------------~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~-~- 241 (390)
T 3o6n_A 190 HANVSYNLLSTLAI-----------------------PIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD-T- 241 (390)
T ss_dssp EEECCSSCCSEEEC-----------------------CSSCSEEECCSSCCCEEECCC---CSSCCEEECCSSCCCC-C-
T ss_pred eeecccccccccCC-----------------------CCcceEEECCCCeeeeccccc---cccccEEECCCCCCcc-c-
Confidence 77776665443221 123334444444333333221 3578888888776443 2
Q ss_pred ccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCC
Q 003193 465 HELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHR 544 (840)
Q Consensus 465 ~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 544 (840)
..+ ..+++|++|++++|. +..+. ......+++|++|+++++ +++.++.. ...+++|+.|++++| .
T Consensus 242 ~~l---~~l~~L~~L~Ls~n~-l~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~~-------~~~l~~L~~L~L~~n-~ 306 (390)
T 3o6n_A 242 AWL---LNYPGLVEVDLSYNE-LEKIM--YHPFVKMQRLERLYISNN-RLVALNLY-------GQPIPTLKVLDLSHN-H 306 (390)
T ss_dssp GGG---GGCTTCSEEECCSSC-CCEEE--SGGGTTCSSCCEEECCSS-CCCEEECS-------SSCCTTCCEEECCSS-C
T ss_pred HHH---cCCCCccEEECCCCc-CCCcC--hhHccccccCCEEECCCC-cCcccCcc-------cCCCCCCCEEECCCC-c
Confidence 234 678889999998886 33322 233467888999999884 45554321 346899999999987 5
Q ss_pred cccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCc
Q 003193 545 VKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLP 606 (840)
Q Consensus 545 L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~ 606 (840)
++.+++. +..+++|++|++++|+ +..+ .+..+++|++|++.+++
T Consensus 307 l~~~~~~--~~~l~~L~~L~L~~N~-i~~~---------------~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 307 LLHVERN--QPQFDRLENLYLDHNS-IVTL---------------KLSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCCCGGG--HHHHTTCSEEECCSSC-CCCC---------------CCCTTCCCSEEECCSSC
T ss_pred ceecCcc--ccccCcCCEEECCCCc-ccee---------------CchhhccCCEEEcCCCC
Confidence 6777543 5778999999999976 3333 23478999999998875
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=1.5e-24 Score=242.34 Aligned_cols=375 Identities=18% Similarity=0.171 Sum_probs=259.0
Q ss_pred cCccchhhhhhccCCCcEEEeccCCcccC-Cccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-C
Q 003193 197 NVADLKEELDKIDEAPTAISIPFRGIYEL-PERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-P 273 (840)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p 273 (840)
.+..+..+|. .++++++|++++|.+..+ |..+ .+++|++|++++|.+...++...|.++++|++|++++|.++.+ |
T Consensus 18 ~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~ 96 (455)
T 3v47_A 18 INRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET 96 (455)
T ss_dssp CSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT
T ss_pred CCCCcccCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh
Confidence 3445666665 678999999999999776 4444 8999999999999987777777789999999999999999865 8
Q ss_pred hhhcCCCCCCEEEccCCccCC--ccc--ccCCCCCCEEeecCCCCccc-Chh-hcCCCCCCEEEccCCCCCCccCccccc
Q 003193 274 SSLGCLINLRTLSLENCLVVD--VAI--IGDLKKLEILSLKHSSIEQL-PRE-IGQLTCLKLLDLSNCSKLKEIRPNVIS 347 (840)
Q Consensus 274 ~~l~~l~~L~~L~L~~~~~~~--~~~--i~~L~~L~~L~l~~~~l~~l-p~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~ 347 (840)
..++++++|++|++++|.+.. +.. ++++++|++|++++|.++.+ |.. ++++++|++|++++ +.+..+++..+.
T Consensus 97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~ 175 (455)
T 3v47_A 97 GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF-NKVKSICEEDLL 175 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT-CCBSCCCTTTSG
T ss_pred hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC-CcccccChhhhh
Confidence 889999999999999999987 444 99999999999999999977 554 89999999999999 566666555566
Q ss_pred CC--CCCcEEEccCCcccceecCCC-CCCcccccCCCCCCeEEEecCCCCCCCC-c----ccccCcceEEEEEcCccCCC
Q 003193 348 NL--TRLEELYMGNSFTQWKVEGQS-NASLGELKQLSRLTTLEVHIPDAQVMPQ-D----LVFVELERFRICIGDVWSWS 419 (840)
Q Consensus 348 ~L--~~L~~L~l~~~~~~~~~~~~~-~~~l~~l~~l~~L~~L~l~~~~~~~~~~-~----~~~~~L~~L~l~~~~~~~~~ 419 (840)
.+ .+|+.|++++|.+........ ......+..+++|+.|++++|.+..... . ....+|+.+.+..+......
T Consensus 176 ~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 255 (455)
T 3v47_A 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255 (455)
T ss_dssp GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC
T ss_pred ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc
Confidence 65 789999999987643221000 0001223456789999999887653221 1 12356666666433221110
Q ss_pred CCccccceEEEeeCCCccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCcccc
Q 003193 420 DGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGT 499 (840)
Q Consensus 420 ~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 499 (840)
.....+... ....+. . ...++|+.|+++++......+..+ ..+++|++|++++|. +..+. ......
T Consensus 256 ~~~~~~~~~-----~~~~~~-~--~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~-l~~~~--~~~~~~ 321 (455)
T 3v47_A 256 FGHTNFKDP-----DNFTFK-G--LEASGVKTCDLSKSKIFALLKSVF---SHFTDLEQLTLAQNE-INKID--DNAFWG 321 (455)
T ss_dssp TTCCSSCCC-----CTTTTG-G--GTTSCCCEEECCSSCCCEECTTTT---TTCTTCCEEECTTSC-CCEEC--TTTTTT
T ss_pred cchhhhccC-----cccccc-c--ccccCceEEEecCccccccchhhc---ccCCCCCEEECCCCc-ccccC--hhHhcC
Confidence 000000000 000000 0 013578888888887666556556 678889999998886 33321 224467
Q ss_pred ccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeecccc
Q 003193 500 FPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKES 579 (840)
Q Consensus 500 ~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 579 (840)
+++|++|+++++ .+..+.... ...+++|++|++++| .++.+++ ..+..+++|++|+++++. +..++..
T Consensus 322 l~~L~~L~Ls~N-~l~~~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~-- 389 (455)
T 3v47_A 322 LTHLLKLNLSQN-FLGSIDSRM------FENLDKLEVLDLSYN-HIRALGD-QSFLGLPNLKELALDTNQ-LKSVPDG-- 389 (455)
T ss_dssp CTTCCEEECCSS-CCCEECGGG------GTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCCCTT--
T ss_pred cccCCEEECCCC-ccCCcChhH------hcCcccCCEEECCCC-cccccCh-hhccccccccEEECCCCc-cccCCHh--
Confidence 888999999885 444443222 346888999999887 4566644 335778899999998864 4444431
Q ss_pred ccccccCCccccccccccceeecccCcccc
Q 003193 580 ENSAHKNGSISGVYFRKLHFLKLQHLPQLT 609 (840)
Q Consensus 580 ~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~ 609 (840)
.+..+++|++|++.+++--.
T Consensus 390 ----------~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 390 ----------IFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp ----------TTTTCTTCCEEECCSSCBCC
T ss_pred ----------HhccCCcccEEEccCCCccc
Confidence 23478899999998876543
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1.4e-23 Score=234.55 Aligned_cols=327 Identities=19% Similarity=0.212 Sum_probs=241.7
Q ss_pred hhhhh-hccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCC
Q 003193 202 KEELD-KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLI 280 (840)
Q Consensus 202 ~~~~~-~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~ 280 (840)
..++. ...+++++|++++|.+..++....+++|++|++.+|.+.. ++. +.++++|++|++++|.++.+|. +.+++
T Consensus 59 ~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~ 134 (466)
T 1o6v_A 59 KSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD-ITP--LANLTNLTGLTLFNNQITDIDP-LKNLT 134 (466)
T ss_dssp CCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred ccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCcccc-Chh--hcCCCCCCEEECCCCCCCCChH-HcCCC
Confidence 33344 5678999999999999888875589999999999998764 333 6899999999999999999876 99999
Q ss_pred CCCEEEccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCC
Q 003193 281 NLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS 360 (840)
Q Consensus 281 ~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~ 360 (840)
+|++|++++|.+...+.++++++|++|+++ +.+..++. +.++++|++|++++ +.+..++. +.++++|++|++++|
T Consensus 135 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 135 NLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISS-NKVSDISV--LAKLTNLESLIATNN 209 (466)
T ss_dssp TCSEEEEEEEEECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECCSS
T ss_pred CCCEEECCCCccCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcC-CcCCCChh--hccCCCCCEEEecCC
Confidence 999999999999986679999999999996 45666654 89999999999999 46777754 799999999999998
Q ss_pred cccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchh
Q 003193 361 FTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGY 440 (840)
Q Consensus 361 ~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~ 440 (840)
.+.. +..+..+++|+.|++++|.+..++....+++|+.|++. ++.....+.
T Consensus 210 ~l~~---------~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~--------------------~n~l~~~~~ 260 (466)
T 1o6v_A 210 QISD---------ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA--------------------NNQISNLAP 260 (466)
T ss_dssp CCCC---------CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC--------------------SSCCCCCGG
T ss_pred cccc---------cccccccCCCCEEECCCCCcccchhhhcCCCCCEEECC--------------------CCccccchh
Confidence 7642 12367789999999999988766543355555555554 333333322
Q ss_pred hHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeeccccccccccccc
Q 003193 441 GMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDG 520 (840)
Q Consensus 441 ~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~ 520 (840)
...+++|+.|++++|.... .+. + ..+++|++|++++|. +.. ......+++|+.|+++++ .+..+.
T Consensus 261 --~~~l~~L~~L~l~~n~l~~-~~~-~---~~l~~L~~L~L~~n~-l~~----~~~~~~l~~L~~L~L~~n-~l~~~~-- 325 (466)
T 1o6v_A 261 --LSGLTKLTELKLGANQISN-ISP-L---AGLTALTNLELNENQ-LED----ISPISNLKNLTYLTLYFN-NISDIS-- 325 (466)
T ss_dssp --GTTCTTCSEEECCSSCCCC-CGG-G---TTCTTCSEEECCSSC-CSC----CGGGGGCTTCSEEECCSS-CCSCCG--
T ss_pred --hhcCCCCCEEECCCCccCc-ccc-c---cCCCccCeEEcCCCc-ccC----chhhcCCCCCCEEECcCC-cCCCch--
Confidence 1225677888887775433 222 3 667888888888875 222 122467788888888876 344332
Q ss_pred ccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCcccccccccccee
Q 003193 521 KVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFL 600 (840)
Q Consensus 521 ~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 600 (840)
+ ...+++|+.|++++| .++.++ .+..+++|++|++++|.- ..+. .+..+++|+.|
T Consensus 326 --~----~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~l-~~~~--------------~~~~l~~L~~L 380 (466)
T 1o6v_A 326 --P----VSSLTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQI-SDLT--------------PLANLTRITQL 380 (466)
T ss_dssp --G----GGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSCC-CBCG--------------GGTTCTTCCEE
T ss_pred --h----hccCccCCEeECCCC-ccCCch---hhccCCCCCEEeCCCCcc-Cccc--------------hhhcCCCCCEE
Confidence 1 356788888888887 466553 346788888888888753 2222 23478888888
Q ss_pred ecccCc
Q 003193 601 KLQHLP 606 (840)
Q Consensus 601 ~l~~c~ 606 (840)
++.+|+
T Consensus 381 ~l~~n~ 386 (466)
T 1o6v_A 381 GLNDQA 386 (466)
T ss_dssp ECCCEE
T ss_pred eccCCc
Confidence 888875
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=1.7e-23 Score=231.67 Aligned_cols=314 Identities=20% Similarity=0.180 Sum_probs=205.8
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCCcccccCCCCCCEEee
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSL 309 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l 309 (840)
.+++|++|++++|.+.+ +| . +..+++|++|++++|.++.+| ++.+++|++|++++|.++..+ ++++++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEEC
Confidence 57888999998888764 45 3 578899999999999988886 888899999999999888853 888999999999
Q ss_pred cCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEe
Q 003193 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389 (840)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~ 389 (840)
++|+++.+| ++++++|++|++++ +.+..++ ++++++|++|++++|..... + .+..+++|+.|+++
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~-N~l~~l~---l~~l~~L~~L~l~~n~~~~~--------~-~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCAR-NTLTEID---VSHNTQLTELDCHLNKKITK--------L-DVTPQTQLTTLDCS 178 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTT-SCCSCCC---CTTCTTCCEEECTTCSCCCC--------C-CCTTCTTCCEEECC
T ss_pred CCCcCCeec--CCCCCcCCEEECCC-Cccceec---cccCCcCCEEECCCCCcccc--------c-ccccCCcCCEEECC
Confidence 999888886 88889999999988 5677764 67888999999988843211 1 36677888888888
Q ss_pred cCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeeccccccccccccccc
Q 003193 390 IPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDD 469 (840)
Q Consensus 390 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~ 469 (840)
+|.+..++ ... +++|+.|++++|.... + .+
T Consensus 179 ~n~l~~l~-l~~--------------------------------------------l~~L~~L~l~~N~l~~-~--~l-- 208 (457)
T 3bz5_A 179 FNKITELD-VSQ--------------------------------------------NKLLNRLNCDTNNITK-L--DL-- 208 (457)
T ss_dssp SSCCCCCC-CTT--------------------------------------------CTTCCEEECCSSCCSC-C--CC--
T ss_pred CCccceec-ccc--------------------------------------------CCCCCEEECcCCcCCe-e--cc--
Confidence 87765543 111 2344445554443222 1 12
Q ss_pred hhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCccccc
Q 003193 470 EEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLF 549 (840)
Q Consensus 470 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 549 (840)
+.+++|++|++++|. +..+ + ...+++|+.|+++++ .++.++ .+.+++|+.|.+++
T Consensus 209 -~~l~~L~~L~Ls~N~-l~~i----p-~~~l~~L~~L~l~~N-~l~~~~---------~~~l~~L~~L~l~~-------- 263 (457)
T 3bz5_A 209 -NQNIQLTFLDCSSNK-LTEI----D-VTPLTQLTYFDCSVN-PLTELD---------VSTLSKLTTLHCIQ-------- 263 (457)
T ss_dssp -TTCTTCSEEECCSSC-CSCC----C-CTTCTTCSEEECCSS-CCSCCC---------CTTCTTCCEEECTT--------
T ss_pred -ccCCCCCEEECcCCc-cccc----C-ccccCCCCEEEeeCC-cCCCcC---------HHHCCCCCEEeccC--------
Confidence 456666666666664 1111 1 345566666666653 333221 33456666665433
Q ss_pred chhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCccc
Q 003193 550 PFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGII 629 (840)
Q Consensus 550 ~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l 629 (840)
.+|+.|++++|..+..++. ..+++|+.|++++|+.+..++... ..++.+
T Consensus 264 --------n~L~~L~l~~n~~~~~~~~---------------~~l~~L~~L~Ls~n~~l~~l~~~~--------~~L~~L 312 (457)
T 3bz5_A 264 --------TDLLEIDLTHNTQLIYFQA---------------EGCRKIKELDVTHNTQLYLLDCQA--------AGITEL 312 (457)
T ss_dssp --------CCCSCCCCTTCTTCCEEEC---------------TTCTTCCCCCCTTCTTCCEEECTT--------CCCSCC
T ss_pred --------CCCCEEECCCCccCCcccc---------------cccccCCEEECCCCcccceeccCC--------CcceEe
Confidence 2455556666665554432 256777777777777666655321 122222
Q ss_pred ccCCCCCcccccccccccCCcceEecccccchhhcccCCccccccCCCceEEEecccCCcce
Q 003193 630 AEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKF 691 (840)
Q Consensus 630 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~ 691 (840)
. +..+++|++|++++|+++.++ ...+++|+.|+++++ +++.
T Consensus 313 ~-------------l~~~~~L~~L~L~~N~l~~l~-------l~~l~~L~~L~l~~N-~l~~ 353 (457)
T 3bz5_A 313 D-------------LSQNPKLVYLYLNNTELTELD-------VSHNTKLKSLSCVNA-HIQD 353 (457)
T ss_dssp C-------------CTTCTTCCEEECTTCCCSCCC-------CTTCTTCSEEECCSS-CCCB
T ss_pred c-------------hhhcccCCEEECCCCcccccc-------cccCCcCcEEECCCC-CCCC
Confidence 1 123578888888888777653 245688888888654 4554
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=3.9e-23 Score=221.81 Aligned_cols=287 Identities=17% Similarity=0.232 Sum_probs=221.1
Q ss_pred chhhhh-hccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCC
Q 003193 201 LKEELD-KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCL 279 (840)
Q Consensus 201 ~~~~~~-~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l 279 (840)
+..++. ...+++++|++++|.+..++....+++|++|++++|.+.. ++ .+.++++|++|++++|.+..+|. +..+
T Consensus 56 i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-~~--~~~~l~~L~~L~l~~n~i~~~~~-~~~l 131 (347)
T 4fmz_A 56 VASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-IS--ALQNLTNLRELYLNEDNISDISP-LANL 131 (347)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CG--GGTTCTTCSEEECTTSCCCCCGG-GTTC
T ss_pred cccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC-ch--HHcCCCcCCEEECcCCcccCchh-hccC
Confidence 344444 5688999999999999888886689999999999998763 43 36899999999999999999876 9999
Q ss_pred CCCCEEEccCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEcc
Q 003193 280 INLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG 358 (840)
Q Consensus 280 ~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~ 358 (840)
++|++|++++|.... +..++++++|++|++++|.+..++. +..+++|++|++++ +.+..++. +..+++|+.|+++
T Consensus 132 ~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~-n~l~~~~~--~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNY-NQIEDISP--LASLTSLHYFTAY 207 (347)
T ss_dssp TTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTT-SCCCCCGG--GGGCTTCCEEECC
T ss_pred CceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccC-Cccccccc--ccCCCccceeecc
Confidence 999999999996554 7779999999999999999998876 89999999999999 57777776 7899999999999
Q ss_pred CCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccc
Q 003193 359 NSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYL 438 (840)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 438 (840)
+|.+.. +..+..+++|+.|++++|.+...+....
T Consensus 208 ~n~l~~---------~~~~~~~~~L~~L~l~~n~l~~~~~~~~------------------------------------- 241 (347)
T 4fmz_A 208 VNQITD---------ITPVANMTRLNSLKIGNNKITDLSPLAN------------------------------------- 241 (347)
T ss_dssp SSCCCC---------CGGGGGCTTCCEEECCSSCCCCCGGGTT-------------------------------------
T ss_pred cCCCCC---------CchhhcCCcCCEEEccCCccCCCcchhc-------------------------------------
Confidence 986642 2337788999999999887765443111
Q ss_pred hhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeeccccccccccc
Q 003193 439 GYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVC 518 (840)
Q Consensus 439 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~ 518 (840)
+++|+.|++++|... .+ ..+ ..+++|++|++++|. +..+ .....+++|+.|+++++. +....
T Consensus 242 -------l~~L~~L~l~~n~l~-~~-~~~---~~l~~L~~L~l~~n~-l~~~----~~~~~l~~L~~L~L~~n~-l~~~~ 303 (347)
T 4fmz_A 242 -------LSQLTWLEIGTNQIS-DI-NAV---KDLTKLKMLNVGSNQ-ISDI----SVLNNLSQLNSLFLNNNQ-LGNED 303 (347)
T ss_dssp -------CTTCCEEECCSSCCC-CC-GGG---TTCTTCCEEECCSSC-CCCC----GGGGGCTTCSEEECCSSC-CCGGG
T ss_pred -------CCCCCEEECCCCccC-CC-hhH---hcCCCcCEEEccCCc-cCCC----hhhcCCCCCCEEECcCCc-CCCcC
Confidence 345666666665432 22 223 667888888888875 2222 234677888888888863 33332
Q ss_pred ccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEeccc
Q 003193 519 DGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCT 569 (840)
Q Consensus 519 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~ 569 (840)
... ...+++|+.|++++|+ ++.+++ +..+++|++|++++|+
T Consensus 304 ~~~------l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 304 MEV------IGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp HHH------HHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred hhH------hhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 211 3468999999999986 677655 5788999999998875
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=6.9e-23 Score=230.05 Aligned_cols=289 Identities=19% Similarity=0.187 Sum_probs=126.3
Q ss_pred cceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCccCC-c-ccccCCCCCCEEee
Q 003193 233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSL 309 (840)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l 309 (840)
+++.|++++|.+... +...|.++++|++|++++|.++.+ |..|+++++|++|+|++|.+.. + ..++++++|++|++
T Consensus 33 ~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 444444444444322 222234444444444444444433 3444444444444444444444 2 23444444444444
Q ss_pred cCCCCccc-ChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEE
Q 003193 310 KHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEV 388 (840)
Q Consensus 310 ~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l 388 (840)
++|.++.+ |..+.++++|++|++++ +.+..+++..++.+++|++|++++|.+... ....+.++++|+.|++
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCNLTSI-------PTEALSHLHGLIVLRL 183 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECC-TTCCEECTTSSTTCTTCCEEEEESCCCSSC-------CHHHHTTCTTCCEEEE
T ss_pred CCCccccCChhHccccccCCEEECCC-CccceeChhhccCCCCCCEEECCCCcCccc-------ChhHhcccCCCcEEeC
Confidence 44444433 23344444444444444 333333333344444444444444433211 1122344444444444
Q ss_pred ecCCCCCCCCcc--cccCcceEEEEEcCcc----CCCCCccccceEEEeeCCCccchhhHHHHHhcccceeecccccccc
Q 003193 389 HIPDAQVMPQDL--VFVELERFRICIGDVW----SWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKN 462 (840)
Q Consensus 389 ~~~~~~~~~~~~--~~~~L~~L~l~~~~~~----~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 462 (840)
+.|.+..++... .+++|+.|++..+... .......+|+.|+++++....+|....
T Consensus 184 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~------------------- 244 (477)
T 2id5_A 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV------------------- 244 (477)
T ss_dssp ESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH-------------------
T ss_pred CCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh-------------------
Confidence 444443332211 2333333333322111 011111133333443333333332222
Q ss_pred ccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecC
Q 003193 463 VVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGC 542 (840)
Q Consensus 463 ~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c 542 (840)
..+++|++|++++|. +..+. ......+++|+.|++.++ .+..+.... ...+++|+.|+++++
T Consensus 245 --------~~l~~L~~L~Ls~n~-l~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~~~------~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 245 --------RHLVYLRFLNLSYNP-ISTIE--GSMLHELLRLQEIQLVGG-QLAVVEPYA------FRGLNYLRVLNVSGN 306 (477)
T ss_dssp --------TTCTTCCEEECCSSC-CCEEC--TTSCTTCTTCCEEECCSS-CCSEECTTT------BTTCTTCCEEECCSS
T ss_pred --------cCccccCeeECCCCc-CCccC--hhhccccccCCEEECCCC-ccceECHHH------hcCcccCCEEECCCC
Confidence 345555555555554 22221 112345556666666553 333332111 345677777777775
Q ss_pred CCcccccchhHHhhcccccEEEEeccc
Q 003193 543 HRVKHLFPFSLVKNLLQLQKVKVTDCT 569 (840)
Q Consensus 543 ~~L~~l~~~~~~~~l~~L~~L~i~~c~ 569 (840)
.++.+++ ..+..+++|++|++.+++
T Consensus 307 -~l~~~~~-~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 307 -QLTTLEE-SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp -CCSCCCG-GGBSCGGGCCEEECCSSC
T ss_pred -cCceeCH-hHcCCCcccCEEEccCCC
Confidence 4565543 334567777777777665
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=3.8e-23 Score=238.16 Aligned_cols=305 Identities=14% Similarity=0.174 Sum_probs=205.1
Q ss_pred cCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-hhhcCCCCCCEEEccCCccCC--cccccCCCCCC
Q 003193 229 LGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLE 305 (840)
Q Consensus 229 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~ 305 (840)
+.+.+++.+.+.++.+. .+|..+|.++++|++|++++|.++.+| ..|+.+++|++|+|++|.+.. +..++++++|+
T Consensus 48 l~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 35667777777766654 566666777777888888877777654 467777788888888777777 34567778888
Q ss_pred EEeecCCCCcccChhh-cCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCC
Q 003193 306 ILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLT 384 (840)
Q Consensus 306 ~L~l~~~~l~~lp~~i-~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~ 384 (840)
+|++++|.++.+|..+ +++++|++|++++ +.+..+++..++++++|++|++++|.+.. ..+..+++|+
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----------~~~~~l~~L~ 195 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTH----------VDLSLIPSLF 195 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECTTSCCSB----------CCGGGCTTCS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeC-CcCCCCChhhhhcCCcCcEEECcCCCCCC----------cChhhhhhhh
Confidence 8888887777777664 7777888888877 45666666557777788888877776542 1244566777
Q ss_pred eEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeecccccccccc
Q 003193 385 TLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVV 464 (840)
Q Consensus 385 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 464 (840)
.|++++|.+..++ ....++.|+++++....++..+ .++|+.|++++|.... +
T Consensus 196 ~L~l~~n~l~~l~-----------------------~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~ 247 (597)
T 3oja_B 196 HANVSYNLLSTLA-----------------------IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--T 247 (597)
T ss_dssp EEECCSSCCSEEE-----------------------CCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--C
T ss_pred hhhcccCcccccc-----------------------CCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--C
Confidence 7777766544322 1123444444444443333222 2578888888776443 2
Q ss_pred ccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCC
Q 003193 465 HELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHR 544 (840)
Q Consensus 465 ~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 544 (840)
..+ ..+++|+.|++++|.-. .+. ......+++|+.|+++++ .+..++.. ...+|+|+.|++++| .
T Consensus 248 ~~l---~~l~~L~~L~Ls~N~l~-~~~--~~~~~~l~~L~~L~Ls~N-~l~~l~~~-------~~~l~~L~~L~Ls~N-~ 312 (597)
T 3oja_B 248 AWL---LNYPGLVEVDLSYNELE-KIM--YHPFVKMQRLERLYISNN-RLVALNLY-------GQPIPTLKVLDLSHN-H 312 (597)
T ss_dssp GGG---GGCTTCSEEECCSSCCC-EEE--SGGGTTCSSCCEEECTTS-CCCEEECS-------SSCCTTCCEEECCSS-C
T ss_pred hhh---ccCCCCCEEECCCCccC-CCC--HHHhcCccCCCEEECCCC-CCCCCCcc-------cccCCCCcEEECCCC-C
Confidence 334 67888999999888633 222 234567888999999884 55554321 346899999999987 4
Q ss_pred cccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCc
Q 003193 545 VKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLP 606 (840)
Q Consensus 545 L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~ 606 (840)
++.+|+. +..+++|+.|++++|.- ..+ .+..+++|+.|++.+++
T Consensus 313 l~~i~~~--~~~l~~L~~L~L~~N~l-~~~---------------~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 313 LLHVERN--QPQFDRLENLYLDHNSI-VTL---------------KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCCGGG--HHHHTTCSEEECCSSCC-CCC---------------CCCTTCCCSEEECCSSC
T ss_pred CCccCcc--cccCCCCCEEECCCCCC-CCc---------------ChhhcCCCCEEEeeCCC
Confidence 6677532 57889999999999763 322 23478999999998876
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=1.2e-22 Score=228.00 Aligned_cols=314 Identities=19% Similarity=0.216 Sum_probs=193.8
Q ss_pred eeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecC
Q 003193 235 KLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKH 311 (840)
Q Consensus 235 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~ 311 (840)
+.++..++.+. .+|..+ .+++++|++++|.++.+ |..|.++++|++|+|++|.+.. |..++++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 34555555543 566544 35788888888888866 5678888888888888888777 67788888888888888
Q ss_pred CCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEec
Q 003193 312 SSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHI 390 (840)
Q Consensus 312 ~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~ 390 (840)
|.++.+|.. +.++++|++|++++ +.+..+++..+.++++|++|++++|.+....+ ..+.++++|+.|++++
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~l~~L~~L~l~~ 161 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISE-NKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-------RAFSGLNSLEQLTLEK 161 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEEECCTTCCEECT-------TSSTTCTTCCEEEEES
T ss_pred CcCCccCcccccCCCCCCEEECCC-CccccCChhHccccccCCEEECCCCccceeCh-------hhccCCCCCCEEECCC
Confidence 888888764 57888888888888 56666655557888888888888776543222 3455667777777776
Q ss_pred CCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeeccccccccccccccch
Q 003193 391 PDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDE 470 (840)
Q Consensus 391 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~ 470 (840)
|.+..++.. ....+++|+.|+++++......+..+
T Consensus 162 n~l~~~~~~------------------------------------------~l~~l~~L~~L~l~~n~i~~~~~~~~--- 196 (477)
T 2id5_A 162 CNLTSIPTE------------------------------------------ALSHLHGLIVLRLRHLNINAIRDYSF--- 196 (477)
T ss_dssp CCCSSCCHH------------------------------------------HHTTCTTCCEEEEESCCCCEECTTCS---
T ss_pred CcCcccChh------------------------------------------HhcccCCCcEEeCCCCcCcEeChhhc---
Confidence 654433211 11112344444444443222222222
Q ss_pred hhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccc
Q 003193 471 EGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFP 550 (840)
Q Consensus 471 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~ 550 (840)
..+++|++|++++|. .+..++.. .....+|+.|++++| +++.+++
T Consensus 197 ~~l~~L~~L~l~~~~---------------------------~~~~~~~~-------~~~~~~L~~L~l~~n-~l~~~~~ 241 (477)
T 2id5_A 197 KRLYRLKVLEISHWP---------------------------YLDTMTPN-------CLYGLNLTSLSITHC-NLTAVPY 241 (477)
T ss_dssp CSCTTCCEEEEECCT---------------------------TCCEECTT-------TTTTCCCSEEEEESS-CCCSCCH
T ss_pred ccCcccceeeCCCCc---------------------------cccccCcc-------cccCccccEEECcCC-cccccCH
Confidence 334445555554443 33333221 112347888888776 4666642
Q ss_pred hhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccc
Q 003193 551 FSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIA 630 (840)
Q Consensus 551 ~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~ 630 (840)
..+..+++|++|+++++. +..++.. .+..+++|++|++.++. +..+..
T Consensus 242 -~~~~~l~~L~~L~Ls~n~-l~~~~~~------------~~~~l~~L~~L~L~~n~-l~~~~~----------------- 289 (477)
T 2id5_A 242 -LAVRHLVYLRFLNLSYNP-ISTIEGS------------MLHELLRLQEIQLVGGQ-LAVVEP----------------- 289 (477)
T ss_dssp -HHHTTCTTCCEEECCSSC-CCEECTT------------SCTTCTTCCEEECCSSC-CSEECT-----------------
T ss_pred -HHhcCccccCeeECCCCc-CCccChh------------hccccccCCEEECCCCc-cceECH-----------------
Confidence 345677888888888765 3333321 33467777777777653 222211
Q ss_pred cCCCCCcccccccccccCCcceEecccccchhhcccCCccccccCCCceEEEecccC
Q 003193 631 EGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCG 687 (840)
Q Consensus 631 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~ 687 (840)
..+..+++|+.|+|++|.++.++...+ ..+++|+.|++++++
T Consensus 290 -----------~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 290 -----------YAFRGLNYLRVLNVSGNQLTTLEESVF----HSVGNLETLILDSNP 331 (477)
T ss_dssp -----------TTBTTCTTCCEEECCSSCCSCCCGGGB----SCGGGCCEEECCSSC
T ss_pred -----------HHhcCcccCCEEECCCCcCceeCHhHc----CCCcccCEEEccCCC
Confidence 112356788888888887777665444 355778888886654
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=2.5e-23 Score=227.01 Aligned_cols=302 Identities=18% Similarity=0.167 Sum_probs=236.9
Q ss_pred ccCCCcEEEeccCCcccCCccc--CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-hhhcCCCCCCE
Q 003193 208 IDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRT 284 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~~ 284 (840)
...+++.+++.++.+..+|... .+++|++|++++|.+.. ++...|..+++|++|++++|.++.+| ..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccc-cChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 4688999999999999998864 79999999999998764 45555699999999999999999874 56899999999
Q ss_pred EEccCCccCC-ccc-ccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCc
Q 003193 285 LSLENCLVVD-VAI-IGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF 361 (840)
Q Consensus 285 L~L~~~~~~~-~~~-i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 361 (840)
|++++|.+.. |.. ++++++|++|++++|.++.++. .++++++|++|++++ +.+..++ ++.+++|++|++++|.
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~---~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSYNL 197 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS-SCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC-CcCCccc---cccccccceeeccccc
Confidence 9999999998 544 6899999999999999998854 589999999999999 5777775 5778999999999886
Q ss_pred ccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhh
Q 003193 362 TQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYG 441 (840)
Q Consensus 362 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~ 441 (840)
+. .+....+|+.|++++|.+..++... .. +++.|+++++.....+ +
T Consensus 198 l~------------~~~~~~~L~~L~l~~n~l~~~~~~~-~~--------------------~L~~L~l~~n~l~~~~-~ 243 (390)
T 3o6n_A 198 LS------------TLAIPIAVEELDASHNSINVVRGPV-NV--------------------ELTILKLQHNNLTDTA-W 243 (390)
T ss_dssp CS------------EEECCSSCSEEECCSSCCCEEECCC-CS--------------------SCCEEECCSSCCCCCG-G
T ss_pred cc------------ccCCCCcceEEECCCCeeeeccccc-cc--------------------cccEEECCCCCCcccH-H
Confidence 53 3344568999999998877654432 23 4455555554444332 2
Q ss_pred HHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccc
Q 003193 442 MKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGK 521 (840)
Q Consensus 442 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~ 521 (840)
+. .+++|+.|++++|......+..+ ..+++|++|++++|. +..++. ....+|+|++|+++++ .+..++..
T Consensus 244 l~-~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~---~~~~l~~L~~L~L~~n-~l~~~~~~- 313 (390)
T 3o6n_A 244 LL-NYPGLVEVDLSYNELEKIMYHPF---VKMQRLERLYISNNR-LVALNL---YGQPIPTLKVLDLSHN-HLLHVERN- 313 (390)
T ss_dssp GG-GCTTCSEEECCSSCCCEEESGGG---TTCSSCCEEECCSSC-CCEEEC---SSSCCTTCCEEECCSS-CCCCCGGG-
T ss_pred Hc-CCCCccEEECCCCcCCCcChhHc---cccccCCEEECCCCc-CcccCc---ccCCCCCCCEEECCCC-cceecCcc-
Confidence 22 36889999999987665556666 779999999999986 444432 3367899999999996 55555422
Q ss_pred cccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEeccc
Q 003193 522 VRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCT 569 (840)
Q Consensus 522 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~ 569 (840)
...+++|+.|++++++ ++.++ ...+++|++|++++++
T Consensus 314 ------~~~l~~L~~L~L~~N~-i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 314 ------QPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp ------HHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred ------ccccCcCCEEECCCCc-cceeC----chhhccCCEEEcCCCC
Confidence 3568999999999975 66663 3678999999999875
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=4e-22 Score=229.59 Aligned_cols=303 Identities=18% Similarity=0.155 Sum_probs=237.0
Q ss_pred ccCCCcEEEeccCCcccCCccc--CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-hhcCCCCCCE
Q 003193 208 IDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRT 284 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~L~~ 284 (840)
...+++.+++.++.+..+|... .+++|++|++++|.+.. ++...|..+++|++|++++|.++.+|+ .++++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 4678999999999999998764 79999999999999875 444456899999999999999998754 5799999999
Q ss_pred EEccCCccCC-ccc-ccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCc
Q 003193 285 LSLENCLVVD-VAI-IGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF 361 (840)
Q Consensus 285 L~L~~~~~~~-~~~-i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 361 (840)
|++++|.+.. |.. ++++++|++|++++|.++.+|. .++++++|++|++++ +.+..++ ++.+++|++|++++|.
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~---~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT-SCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC-CCCCCcC---hhhhhhhhhhhcccCc
Confidence 9999999998 544 6999999999999999998765 689999999999999 5777775 5678999999999886
Q ss_pred ccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhh
Q 003193 362 TQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYG 441 (840)
Q Consensus 362 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~ 441 (840)
+. .+....+|+.|++++|.+..++... . .+++.|+++++..... .+
T Consensus 204 l~------------~l~~~~~L~~L~ls~n~l~~~~~~~-~--------------------~~L~~L~L~~n~l~~~-~~ 249 (597)
T 3oja_B 204 LS------------TLAIPIAVEELDASHNSINVVRGPV-N--------------------VELTILKLQHNNLTDT-AW 249 (597)
T ss_dssp CS------------EEECCTTCSEEECCSSCCCEEECSC-C--------------------SCCCEEECCSSCCCCC-GG
T ss_pred cc------------cccCCchhheeeccCCccccccccc-C--------------------CCCCEEECCCCCCCCC-hh
Confidence 53 3445568999999998876555432 1 2455555555544433 22
Q ss_pred HHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccc
Q 003193 442 MKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGK 521 (840)
Q Consensus 442 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~ 521 (840)
+. .+++|+.|++++|......+..+ ..+++|+.|++++|. +..++. ....+|+|+.|+++++ .+..++..
T Consensus 250 l~-~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~-l~~l~~---~~~~l~~L~~L~Ls~N-~l~~i~~~- 319 (597)
T 3oja_B 250 LL-NYPGLVEVDLSYNELEKIMYHPF---VKMQRLERLYISNNR-LVALNL---YGQPIPTLKVLDLSHN-HLLHVERN- 319 (597)
T ss_dssp GG-GCTTCSEEECCSSCCCEEESGGG---TTCSSCCEEECTTSC-CCEEEC---SSSCCTTCCEEECCSS-CCCCCGGG-
T ss_pred hc-cCCCCCEEECCCCccCCCCHHHh---cCccCCCEEECCCCC-CCCCCc---ccccCCCCcEEECCCC-CCCccCcc-
Confidence 22 36889999999987766666666 779999999999986 444432 3367899999999986 45554322
Q ss_pred cccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccc
Q 003193 522 VRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTN 570 (840)
Q Consensus 522 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~ 570 (840)
...+++|+.|++++|+ ++.++ +..+++|+.|++++++-
T Consensus 320 ------~~~l~~L~~L~L~~N~-l~~~~----~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 320 ------QPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp ------HHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSCE
T ss_pred ------cccCCCCCEEECCCCC-CCCcC----hhhcCCCCEEEeeCCCC
Confidence 4578999999999975 56653 35789999999998763
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=8.4e-22 Score=209.69 Aligned_cols=237 Identities=19% Similarity=0.281 Sum_probs=147.9
Q ss_pred cceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEee
Q 003193 233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSL 309 (840)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l 309 (840)
+++.++++++.+. .+|..+ .++|++|++++|.++.+ |..+.++++|++|++++|.++. +..++++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5777777777654 566654 35788888888888866 4578888888888888888777 567888888888888
Q ss_pred cCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEe
Q 003193 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389 (840)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~ 389 (840)
++|.++.+|..+. ++|++|++++ +.+..+|...++++++|++|++++|.+... +.....+..+ +|+.|+++
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENS-----GFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBGG-----GSCTTSSCSC-CCSCCBCC
T ss_pred CCCcCCccCcccc--ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCccccC-----CCCcccccCC-ccCEEECc
Confidence 8888888887665 7888888888 567778777678888888888888765321 1122344555 78888888
Q ss_pred cCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeeccccccccccccccc
Q 003193 390 IPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDD 469 (840)
Q Consensus 390 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~ 469 (840)
+|.+..+|..+. ++|+.| +++++.....+......+++|+.|++++|......+..+
T Consensus 181 ~n~l~~l~~~~~-~~L~~L--------------------~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~-- 237 (332)
T 2ft3_A 181 EAKLTGIPKDLP-ETLNEL--------------------HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL-- 237 (332)
T ss_dssp SSBCSSCCSSSC-SSCSCC--------------------BCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG--
T ss_pred CCCCCccCcccc-CCCCEE--------------------ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh--
Confidence 877766654321 233333 333222222221111123455666666554333222233
Q ss_pred hhhcccccEEEeecCCCeEEEEeCCCccccccccceeeccc
Q 003193 470 EEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHN 510 (840)
Q Consensus 470 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 510 (840)
..+++|++|++++|. +..+ +.....+++|+.|++++
T Consensus 238 -~~l~~L~~L~L~~N~-l~~l---p~~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 238 -SFLPTLRELHLDNNK-LSRV---PAGLPDLKLLQVVYLHT 273 (332)
T ss_dssp -GGCTTCCEEECCSSC-CCBC---CTTGGGCTTCCEEECCS
T ss_pred -hCCCCCCEEECCCCc-Ceec---ChhhhcCccCCEEECCC
Confidence 455666666666654 2221 12234455555555555
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=4.3e-21 Score=204.06 Aligned_cols=154 Identities=20% Similarity=0.345 Sum_probs=96.8
Q ss_pred cceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-hhcCCCCCCEEEccCCccCC--cccccCCCCCCEEee
Q 003193 233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSL 309 (840)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l 309 (840)
+++.++++++.+. .+|..+ .+.|++|++++|.++.+|. .++++++|++|++++|.+.. |..++++++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4555555555443 344433 2466777777777766644 56777777777777777666 556777777777777
Q ss_pred cCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEe
Q 003193 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389 (840)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~ 389 (840)
++|.++.+|..+. ++|++|++++ +.+..++...++++++|++|++++|.+... +.....+.++++|+.|+++
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKSS-----GIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCGG-----GBCTTGGGGCTTCCEEECC
T ss_pred CCCcCCccChhhc--ccccEEECCC-CcccccCHhHhcCCccccEEECCCCcCCcc-----CcChhhccCCCCcCEEECC
Confidence 7777777766554 6777777776 456666666567777777777777654310 1122445666777777777
Q ss_pred cCCCCCCCC
Q 003193 390 IPDAQVMPQ 398 (840)
Q Consensus 390 ~~~~~~~~~ 398 (840)
+|.+..++.
T Consensus 180 ~n~l~~l~~ 188 (330)
T 1xku_A 180 DTNITTIPQ 188 (330)
T ss_dssp SSCCCSCCS
T ss_pred CCccccCCc
Confidence 766655543
No 44
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=2.9e-23 Score=240.29 Aligned_cols=152 Identities=18% Similarity=0.247 Sum_probs=99.0
Q ss_pred CCCcceeEeeccCccc---cCCCc-----------hhhcCCCCCcEEEcCCCCCCC-CChhhcCC--CCCCEEEccCCc-
Q 003193 230 GFLKLKLFLFFTENLS---LQIPD-----------PFFEGMTELRVLDLTGFRFHS-LPSSLGCL--INLRTLSLENCL- 291 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~---~~~~~-----------~~~~~l~~Lr~L~l~~~~~~~-lp~~l~~l--~~L~~L~L~~~~- 291 (840)
.+++|+.|.+.++... +.+|. .++..+++|++|++++|.++. .+..+... .+|++|++++|.
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 5788999999765421 12221 222367889999999887663 34445553 349999998886
Q ss_pred cCC---cccccCCCCCCEEeecCCCCcc-----cChhhcCCCCCCEEEccCCCCCCccCc----ccccCCCCCcEEEccC
Q 003193 292 VVD---VAIIGDLKKLEILSLKHSSIEQ-----LPREIGQLTCLKLLDLSNCSKLKEIRP----NVISNLTRLEELYMGN 359 (840)
Q Consensus 292 ~~~---~~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~l~~~p~----~~l~~L~~L~~L~l~~ 359 (840)
+.. +..+.++++|++|++++|.++. ++.....+++|++|+++++ .+..+.. ..+.++++|++|++++
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLETIARNCRSLVSVKVGD 229 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHHHHhhCCCCcEEeccC
Confidence 222 2334478889999998887653 3444567888999998874 4442221 2246788899998888
Q ss_pred CcccceecCCCCCCcccccCCCCCCeEEEec
Q 003193 360 SFTQWKVEGQSNASLGELKQLSRLTTLEVHI 390 (840)
Q Consensus 360 ~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~ 390 (840)
|.+.. ....+..+++|+.|+++.
T Consensus 230 ~~~~~--------l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 230 FEILE--------LVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp CBGGG--------GHHHHHHCTTCCEEEECB
T ss_pred ccHHH--------HHHHHhhhhHHHhhcccc
Confidence 75432 224566778888888874
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=2.2e-21 Score=204.09 Aligned_cols=245 Identities=17% Similarity=0.173 Sum_probs=175.8
Q ss_pred CCCcEEEeccCCcc---cCCccc-CCCcceeEeecc-CccccCCCchhhcCCCCCcEEEcCCCCCC-CCChhhcCCCCCC
Q 003193 210 EAPTAISIPFRGIY---ELPERL-GFLKLKLFLFFT-ENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCLINLR 283 (840)
Q Consensus 210 ~~l~~L~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~l~~l~~L~ 283 (840)
.++++|+++++.+. .+|..+ .+++|++|++++ |.+.+.+|..+ .++++|++|++++|.++ .+|..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 56788888888885 466655 688888888884 77776777665 77888888888888887 6788888888888
Q ss_pred EEEccCCccCC--cccccCCCCCCEEeecCCCCc-ccChhhcCCC-CCCEEEccCCCCCC-ccCcccccCCCCCcEEEcc
Q 003193 284 TLSLENCLVVD--VAIIGDLKKLEILSLKHSSIE-QLPREIGQLT-CLKLLDLSNCSKLK-EIRPNVISNLTRLEELYMG 358 (840)
Q Consensus 284 ~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~-~L~~L~L~~~~~l~-~~p~~~l~~L~~L~~L~l~ 358 (840)
+|++++|.+.. |..++++++|++|++++|.++ .+|..+++++ +|++|++++| .+. .+|.. ++.++ |++|+++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~-~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPT-FANLN-LAFVDLS 205 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGG-GGGCC-CSEEECC
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC-eeeccCChH-HhCCc-ccEEECc
Confidence 88888888774 677888888888888888887 7788888887 8888888884 444 45544 67776 8888888
Q ss_pred CCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccc
Q 003193 359 NSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYL 438 (840)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 438 (840)
+|.+.... ...+..+++|+.|++++|.+...+..+
T Consensus 206 ~N~l~~~~-------~~~~~~l~~L~~L~L~~N~l~~~~~~~-------------------------------------- 240 (313)
T 1ogq_A 206 RNMLEGDA-------SVLFGSDKNTQKIHLAKNSLAFDLGKV-------------------------------------- 240 (313)
T ss_dssp SSEEEECC-------GGGCCTTSCCSEEECCSSEECCBGGGC--------------------------------------
T ss_pred CCcccCcC-------CHHHhcCCCCCEEECCCCceeeecCcc--------------------------------------
Confidence 87654322 255667777888888776543221110
Q ss_pred hhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccc
Q 003193 439 GYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLE 515 (840)
Q Consensus 439 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 515 (840)
..+++|++|++++|......|..+ ..+++|++|++++|.-...+ +....+++|+.|++.+.+.+.
T Consensus 241 -----~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~i----p~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 241 -----GLSKNLNGLDLRNNRIYGTLPQGL---TQLKFLHSLNVSFNNLCGEI----PQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp -----CCCTTCCEEECCSSCCEECCCGGG---GGCTTCCEEECCSSEEEEEC----CCSTTGGGSCGGGTCSSSEEE
T ss_pred -----cccCCCCEEECcCCcccCcCChHH---hcCcCCCEEECcCCcccccC----CCCccccccChHHhcCCCCcc
Confidence 013677788888877665666666 67888999999888632222 223678888888888766544
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=5e-21 Score=202.54 Aligned_cols=220 Identities=22% Similarity=0.307 Sum_probs=176.4
Q ss_pred ccCCCcEEEeccCCcccCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEE
Q 003193 208 IDEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~ 286 (840)
....++.|+++++.+..+|..+ .+++|++|++++|.+. .+|..+ .++++|++|++++|.++.+|..++++++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 3467899999999999998866 7999999999999988 788765 889999999999999999999999999999999
Q ss_pred ccCCccCC--cccccC---------CCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEE
Q 003193 287 LENCLVVD--VAIIGD---------LKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEEL 355 (840)
Q Consensus 287 L~~~~~~~--~~~i~~---------L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L 355 (840)
+++|.+.. |..++. +++|++|++++|.++.+|..++++++|++|++++ +.+..+|.. ++++++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-N~l~~l~~~-l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPA-IHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEES-SCCCCCCGG-GGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccC-CCCCcCchh-hccCCCCCEE
Confidence 99987655 666554 9999999999999999999999999999999999 577888886 8999999999
Q ss_pred EccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCC-CCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCC
Q 003193 356 YMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ-VMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNN 434 (840)
Q Consensus 356 ~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~ 434 (840)
++++|......+ ..+..+++|+.|++++|... .+|.
T Consensus 235 ~Ls~n~~~~~~p-------~~~~~l~~L~~L~L~~n~~~~~~p~------------------------------------ 271 (328)
T 4fcg_A 235 DLRGCTALRNYP-------PIFGGRAPLKRLILKDCSNLLTLPL------------------------------------ 271 (328)
T ss_dssp ECTTCTTCCBCC-------CCTTCCCCCCEEECTTCTTCCBCCT------------------------------------
T ss_pred ECcCCcchhhhH-------HHhcCCCCCCEEECCCCCchhhcch------------------------------------
Confidence 999987654333 45667778888888765432 1211
Q ss_pred CccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecC
Q 003193 435 STYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNG 484 (840)
Q Consensus 435 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~ 484 (840)
++. .+++|+.|++++|...+.+|..+ +.+++|+.+.+...
T Consensus 272 ------~~~-~l~~L~~L~L~~n~~~~~iP~~l---~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 272 ------DIH-RLTQLEKLDLRGCVNLSRLPSLI---AQLPANCIILVPPH 311 (328)
T ss_dssp ------TGG-GCTTCCEEECTTCTTCCCCCGGG---GGSCTTCEEECCGG
T ss_pred ------hhh-cCCCCCEEeCCCCCchhhccHHH---hhccCceEEeCCHH
Confidence 111 14567777777777777777766 66777777766544
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=6.5e-21 Score=201.63 Aligned_cols=107 Identities=20% Similarity=0.341 Sum_probs=84.7
Q ss_pred CCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEcc
Q 003193 255 GMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLS 333 (840)
Q Consensus 255 ~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~ 333 (840)
...++++|++++|.++.+|+.++++++|++|++++|.+.. |..++++++|++|++++|.++.+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 3567888888888888888888888888888888888887 777888888999999888888888888889999999998
Q ss_pred CCCCCCccCcccccC---------CCCCcEEEccCCcc
Q 003193 334 NCSKLKEIRPNVISN---------LTRLEELYMGNSFT 362 (840)
Q Consensus 334 ~~~~l~~~p~~~l~~---------L~~L~~L~l~~~~~ 362 (840)
+|+.++.+|.. ++. +++|++|++++|.+
T Consensus 159 ~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l 195 (328)
T 4fcg_A 159 ACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGI 195 (328)
T ss_dssp EETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECC
T ss_pred CCCCccccChh-HhhccchhhhccCCCCCEEECcCCCc
Confidence 88778877765 332 55555555554433
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=2.4e-20 Score=198.35 Aligned_cols=237 Identities=17% Similarity=0.241 Sum_probs=170.0
Q ss_pred CCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccC
Q 003193 211 APTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLEN 289 (840)
Q Consensus 211 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~ 289 (840)
.++.++++++.+..+|..+ .+++++|++++|.+.. ++...|.++++|++|++++|.++.+ |..++++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCc-cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 4778888888888887655 4688888988888764 4444458888999999999888866 67788889999999998
Q ss_pred CccCC-cccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCc--cCcccccCCCCCcEEEccCCcccce
Q 003193 290 CLVVD-VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKE--IRPNVISNLTRLEELYMGNSFTQWK 365 (840)
Q Consensus 290 ~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~--~p~~~l~~L~~L~~L~l~~~~~~~~ 365 (840)
|.+.. |..+. ++|++|++++|.++.+|.. +.++++|++|++++ +.+.. +++..++.+ +|++|++++|.+..
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG-NPLENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCS-CCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCC-CccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 88887 65555 7889999999888888754 78889999999988 45542 333446667 88888888887643
Q ss_pred ecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHH
Q 003193 366 VEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKML 445 (840)
Q Consensus 366 ~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~ 445 (840)
++ ..+ .++|+.|++++|.+...+.. .+..+++++.|+++++.....+......
T Consensus 187 l~-------~~~--~~~L~~L~l~~n~i~~~~~~------------------~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 239 (332)
T 2ft3_A 187 IP-------KDL--PETLNELHLDHNKIQAIELE------------------DLLRYSKLYRLGLGHNQIRMIENGSLSF 239 (332)
T ss_dssp CC-------SSS--CSSCSCCBCCSSCCCCCCTT------------------SSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred cC-------ccc--cCCCCEEECCCCcCCccCHH------------------HhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence 11 111 15788888888877655422 1223344555555555554444332234
Q ss_pred HhcccceeeccccccccccccccchhhcccccEEEeecCC
Q 003193 446 LKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP 485 (840)
Q Consensus 446 l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~ 485 (840)
+++|+.|++++|... .+|..+ ..+++|++|++++|.
T Consensus 240 l~~L~~L~L~~N~l~-~lp~~l---~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 240 LPTLRELHLDNNKLS-RVPAGL---PDLKLLQVVYLHTNN 275 (332)
T ss_dssp CTTCCEEECCSSCCC-BCCTTG---GGCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCcCe-ecChhh---hcCccCCEEECCCCC
Confidence 678999999988644 666666 779999999999986
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=8.6e-20 Score=194.03 Aligned_cols=277 Identities=13% Similarity=0.155 Sum_probs=157.0
Q ss_pred chhhhhhccCCCcEEEeccCCcccCCcc-c-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcC
Q 003193 201 LKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGC 278 (840)
Q Consensus 201 ~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~ 278 (840)
+..+|....+.++.|++++|.+..++.. + .+++|++|++++|.+....|.. |.++++|++|++++|.++.+|..+.
T Consensus 43 l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~- 120 (330)
T 1xku_A 43 LEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKNQLKELPEKMP- 120 (330)
T ss_dssp CCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSSCCSBCCSSCC-
T ss_pred ccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH-hcCCCCCCEEECCCCcCCccChhhc-
Confidence 3334444445666666666666555542 2 5666666666666655333333 3566666666666666666665543
Q ss_pred CCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCc---ccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCc
Q 003193 279 LINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIE---QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLE 353 (840)
Q Consensus 279 l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~---~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~ 353 (840)
++|++|++++|.+.. +..++++++|++|++++|.++ ..|..+.++++|++|++++ +.+..+|.. + .++|+
T Consensus 121 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~l~~~-~--~~~L~ 195 (330)
T 1xku_A 121 -KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD-TNITTIPQG-L--PPSLT 195 (330)
T ss_dssp -TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS-SCCCSCCSS-C--CTTCS
T ss_pred -ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC-CccccCCcc-c--cccCC
Confidence 566666666666655 234566666666666666554 2344556666666666666 455555543 2 25666
Q ss_pred EEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeC
Q 003193 354 ELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLN 433 (840)
Q Consensus 354 ~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~ 433 (840)
+|++++|.+.... ...+..+++|+.|++++|.+...+. ..+...++++.|+++++
T Consensus 196 ~L~l~~n~l~~~~-------~~~~~~l~~L~~L~Ls~n~l~~~~~------------------~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 196 ELHLDGNKITKVD-------AASLKGLNNLAKLGLSFNSISAVDN------------------GSLANTPHLRELHLNNN 250 (330)
T ss_dssp EEECTTSCCCEEC-------TGGGTTCTTCCEEECCSSCCCEECT------------------TTGGGSTTCCEEECCSS
T ss_pred EEECCCCcCCccC-------HHHhcCCCCCCEEECCCCcCceeCh------------------hhccCCCCCCEEECCCC
Confidence 6666666543221 1345556666666666665544332 12344556667777777
Q ss_pred CCccchhhHHHHHhcccceeeccccccccccccccc---hhhcccccEEEeecCCCeEEEEeCCCccccccccceeeccc
Q 003193 434 NSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDD---EEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHN 510 (840)
Q Consensus 434 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~---~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 510 (840)
....+|.++.. +++|+.|++++|......+..+.+ ....+.|+.|++.+++.. .+.........+++|+.+++++
T Consensus 251 ~l~~lp~~l~~-l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~-~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 251 KLVKVPGGLAD-HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ-YWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp CCSSCCTTTTT-CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC-GGGSCGGGGTTCCCGGGEEC--
T ss_pred cCccCChhhcc-CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc-ccccCccccccccceeEEEecc
Confidence 66667766543 678888888887654332223311 023578899999988731 1111122345667788888876
Q ss_pred c
Q 003193 511 L 511 (840)
Q Consensus 511 ~ 511 (840)
.
T Consensus 329 N 329 (330)
T 1xku_A 329 Y 329 (330)
T ss_dssp -
T ss_pred c
Confidence 3
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=4.5e-20 Score=198.10 Aligned_cols=191 Identities=20% Similarity=0.232 Sum_probs=104.2
Q ss_pred EEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCccC
Q 003193 215 ISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVV 293 (840)
Q Consensus 215 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~ 293 (840)
.+.+++.+..+|..+. ++|++|++++|.+. .++...+.++++|++|++++|.++.+ |..++++++|++|++++|.++
T Consensus 36 c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT-EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EECCSTTCSSCCTTCC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred eeCCCCCccccccccc-ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 4455555555554332 35666666665554 23333345666666666666666544 344666666666666666665
Q ss_pred C-ccc-ccCCCCCCEEeecCCCCcccCh--hhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCC
Q 003193 294 D-VAI-IGDLKKLEILSLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQ 369 (840)
Q Consensus 294 ~-~~~-i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~ 369 (840)
. +.. ++++++|++|++++|.++.+|. .+.++++|++|++++|+.+..+++..++++++|++|++++|.+....+
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-- 191 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP-- 191 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT--
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH--
Confidence 5 322 5566666666666666666654 455666666666666445555554445666666666666655432211
Q ss_pred CCCCcccccCCCCCCeEEEecCCCCCCCCcc--cccCcceEEEEEcC
Q 003193 370 SNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGD 414 (840)
Q Consensus 370 ~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~ 414 (840)
..+.++++|+.|++++|.+..++... .+++|+.|++..+.
T Consensus 192 -----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 192 -----KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp -----TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred -----HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence 34445556666666666554444332 34555555555433
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=8.9e-22 Score=227.74 Aligned_cols=409 Identities=15% Similarity=0.059 Sum_probs=242.1
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCC-CcEEEcCCCCC-C--CCChhhcCCCCCCEEEccCCccCCc------cccc
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTE-LRVLDLTGFRF-H--SLPSSLGCLINLRTLSLENCLVVDV------AIIG 299 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~-Lr~L~l~~~~~-~--~lp~~l~~l~~L~~L~L~~~~~~~~------~~i~ 299 (840)
.+++|++|+++++.+....+..+...++. |++|++++|.. + .++..+.++++|++|++++|.+.+. ....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 57899999999887654433333222344 99999998862 2 3444456889999999999987652 2456
Q ss_pred CCCCCCEEeecCCCCc-----ccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCc
Q 003193 300 DLKKLEILSLKHSSIE-----QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASL 374 (840)
Q Consensus 300 ~L~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l 374 (840)
++++|++|++++|.++ .++..+.++++|++|++++| .+..+|.. ++++++|++|+++...... ......
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~-~~~~~~L~~L~l~~~~~~~----~~~~~~ 263 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGF-FKAAANLEEFCGGSLNEDI----GMPEKY 263 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHH-HHHCTTCCEEEECBCCCCT----TCTTSS
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHH-HhhhhHHHhhccccccccc----chHHHH
Confidence 7899999999999876 45566778999999999994 56667754 8899999999997532211 111233
Q ss_pred ccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceee
Q 003193 375 GELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHL 454 (840)
Q Consensus 375 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 454 (840)
..+..+++|+.|+++......++... .. +++|++|++
T Consensus 264 ~~l~~~~~L~~L~l~~~~~~~l~~~~-------------------~~------------------------~~~L~~L~L 300 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGPNEMPILF-------------------PF------------------------AAQIRKLDL 300 (592)
T ss_dssp SCCCCCTTCCEEEETTCCTTTGGGGG-------------------GG------------------------GGGCCEEEE
T ss_pred HHhhccccccccCccccchhHHHHHH-------------------hh------------------------cCCCcEEec
Confidence 55666777888877654332222211 11 344555555
Q ss_pred cccccccccc-ccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeeccc----------ccccccccccccc
Q 003193 455 DELAGFKNVV-HELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHN----------LINLEKVCDGKVR 523 (840)
Q Consensus 455 ~~~~~~~~~~-~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~----------~~~L~~~~~~~~~ 523 (840)
++|....... ..+ ..+++|++|++.++-.-..+ ......+++|++|++.+ |..+.......+
T Consensus 301 s~~~l~~~~~~~~~---~~~~~L~~L~L~~~~~~~~l---~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l- 373 (592)
T 3ogk_B 301 LYALLETEDHCTLI---QKCPNLEVLETRNVIGDRGL---EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL- 373 (592)
T ss_dssp TTCCCCHHHHHHHH---TTCTTCCEEEEEGGGHHHHH---HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH-
T ss_pred CCCcCCHHHHHHHH---HhCcCCCEEeccCccCHHHH---HHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH-
Confidence 5444111111 111 34556666665532100000 00013455666666663 444432211100
Q ss_pred cCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEec---ccccceeeccccccccccCCcccccccccccee
Q 003193 524 LNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTD---CTNLKLIVGKESENSAHKNGSISGVYFRKLHFL 600 (840)
Q Consensus 524 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~---c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 600 (840)
...+++|++|.+ .|..++..........+++|++|++.+ |+.+...+.... -...+..+++|++|
T Consensus 374 ----~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~-------~~~~~~~~~~L~~L 441 (592)
T 3ogk_B 374 ----AQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG-------VRSLLIGCKKLRRF 441 (592)
T ss_dssp ----HHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH-------HHHHHHHCTTCCEE
T ss_pred ----HhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH-------HHHHHHhCCCCCEE
Confidence 134788888888 566676653333445588888888884 445554321100 00113368888899
Q ss_pred ecccCcc-cccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecccccchhhcccCCccccccCCCce
Q 003193 601 KLQHLPQ-LTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLT 679 (840)
Q Consensus 601 ~l~~c~~-L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~ 679 (840)
++..|.+ +..-. .......+++|++|+|++|.+++.....+ ...+++|+
T Consensus 442 ~L~~~~~~l~~~~---------------------------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~~~~~~L~ 491 (592)
T 3ogk_B 442 AFYLRQGGLTDLG---------------------------LSYIGQYSPNVRWMLLGYVGESDEGLMEF---SRGCPNLQ 491 (592)
T ss_dssp EEECCGGGCCHHH---------------------------HHHHHHSCTTCCEEEECSCCSSHHHHHHH---HTCCTTCC
T ss_pred EEecCCCCccHHH---------------------------HHHHHHhCccceEeeccCCCCCHHHHHHH---HhcCcccC
Confidence 8887764 22110 00011247889999999997765322111 24669999
Q ss_pred EEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccCccccccccccccccccC
Q 003193 680 KLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHL 745 (840)
Q Consensus 680 ~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c 745 (840)
.|+|++|+ ++......+...+++|++|++++|. ++.. +... ....+|.|+...|...
T Consensus 492 ~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~-----~~~~--l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 492 KLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT-----GQDL--MQMARPYWNIELIPSR 548 (592)
T ss_dssp EEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT-----CTTG--GGGCCTTEEEEEECCC
T ss_pred eeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH-----HHHH--HHHhCCCcEEEEecCc
Confidence 99999998 6554334556789999999999998 5432 2211 1122666666555443
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=6.1e-20 Score=192.92 Aligned_cols=174 Identities=22% Similarity=0.243 Sum_probs=121.4
Q ss_pred cEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC---ChhhcCCCCCCEEEccC
Q 003193 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL---PSSLGCLINLRTLSLEN 289 (840)
Q Consensus 213 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l---p~~l~~l~~L~~L~L~~ 289 (840)
+.++.+++.+..+|..+ .+++++|++++|.+. .+|..+|.++++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCC-CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 35666666676676644 257777777777765 56666667788888888888877644 56677778888888888
Q ss_pred CccCC-cccccCCCCCCEEeecCCCCcccCh--hhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccc-e
Q 003193 290 CLVVD-VAIIGDLKKLEILSLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQW-K 365 (840)
Q Consensus 290 ~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~-~ 365 (840)
|.+.. +..+.++++|++|++++|.++.+|. .+..+++|++|++++ +.+...++..++.+++|++|++++|.+.. .
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-THTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTT-SCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCC-CcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 87777 6667778888888888887777664 577778888888877 45555555557777888888887776542 1
Q ss_pred ecCCCCCCcccccCCCCCCeEEEecCCCCCC
Q 003193 366 VEGQSNASLGELKQLSRLTTLEVHIPDAQVM 396 (840)
Q Consensus 366 ~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~ 396 (840)
.+ ..+..+++|+.|++++|.+..+
T Consensus 167 ~~-------~~~~~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 167 LP-------DIFTELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp EC-------SCCTTCTTCCEEECTTSCCCEE
T ss_pred ch-------hHHhhCcCCCEEECCCCCcCCc
Confidence 11 3456677777777777765543
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=1.8e-19 Score=187.13 Aligned_cols=192 Identities=21% Similarity=0.319 Sum_probs=140.9
Q ss_pred CccchhhhhhccCCCcEEEeccCCcccCCcc-c-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCC-CCCC-C
Q 003193 198 VADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR-FHSL-P 273 (840)
Q Consensus 198 ~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~l-p 273 (840)
+..+..+|...++++++|++++|.+..++.. + .+++|++|++++|.+....+. .|.++++|++|++++|. +..+ |
T Consensus 20 ~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 20 QQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp SSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTTCCCCCT
T ss_pred cCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh-hcCCccCCCEEeCCCCCCccccCH
Confidence 3445555666677888888888888776643 2 678888888888876643343 44778888888888886 7766 6
Q ss_pred hhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCC
Q 003193 274 SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350 (840)
Q Consensus 274 ~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~ 350 (840)
..+..+++|++|++++|.+.. +..++++++|++|++++|.++.+|.. ++++++|++|++++ +.+..+|...+..++
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLH 177 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCT
T ss_pred HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC-CcccccCHHHhcCcc
Confidence 677888888888888888777 46677888888888888888877654 67888888888888 567777776677888
Q ss_pred CCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCC
Q 003193 351 RLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQ 398 (840)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 398 (840)
+|++|++++|.+....+ ..+..+++|+.|++++|.+..++.
T Consensus 178 ~L~~L~l~~n~l~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHVHP-------HAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp TCCEEECCSSCCCEECT-------TTTTTCTTCCEEECCSSCCSCCCH
T ss_pred ccCEEECCCCcccccCH-------hHccCcccccEeeCCCCcCCcCCH
Confidence 88888888876653322 456667788888888877765553
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=1.6e-19 Score=200.78 Aligned_cols=174 Identities=22% Similarity=0.290 Sum_probs=136.8
Q ss_pred CcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCC
Q 003193 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENC 290 (840)
Q Consensus 212 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~ 290 (840)
.+.++..+..+..+|..+. ++++.|++++|.+....+ ..|.++++|++|++++|.++.+ |..|.++++|++|+|++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQA-DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC-CCccEEECcCCcCceECH-HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 4567777777777776543 678888888888765444 4458889999999999988866 467888899999999999
Q ss_pred ccCC--cccccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceec
Q 003193 291 LVVD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367 (840)
Q Consensus 291 ~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~ 367 (840)
.++. +..++++++|++|++++|.++.+|. .+.++++|++|++++|+.++.++...+.++++|++|++++|.+..
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--- 210 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--- 210 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS---
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc---
Confidence 8887 3458888999999999998888875 578889999999998888888888778888999999998886642
Q ss_pred CCCCCCcccccCCCCCCeEEEecCCCCCC
Q 003193 368 GQSNASLGELKQLSRLTTLEVHIPDAQVM 396 (840)
Q Consensus 368 ~~~~~~l~~l~~l~~L~~L~l~~~~~~~~ 396 (840)
+..+..+++|+.|++++|.+..+
T Consensus 211 ------~~~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 211 ------MPNLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp ------CCCCTTCTTCCEEECTTSCCSEE
T ss_pred ------cccccccccccEEECcCCcCccc
Confidence 23467778888888888776544
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=1.7e-19 Score=199.85 Aligned_cols=174 Identities=20% Similarity=0.318 Sum_probs=131.4
Q ss_pred CcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-hhhcCCCCCCEEEccCC
Q 003193 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENC 290 (840)
Q Consensus 212 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~ 290 (840)
.+.++..+..+..+|..+. ++++.|++++|.+.. ++...|.++++|++|++++|.++.++ ..|.++++|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCE-ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCe-eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4566677777777776543 677888888887664 33344578888888888888888664 56888888888888888
Q ss_pred ccCC-c-ccccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceec
Q 003193 291 LVVD-V-AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367 (840)
Q Consensus 291 ~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~ 367 (840)
.++. + ..+.++++|++|++++|.++.+|. .+.++++|++|++++|+.+..++...+.++++|++|++++|.+.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~---- 198 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---- 198 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS----
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc----
Confidence 8877 3 468888888888888888887765 57788888888888888888888777888888888888888654
Q ss_pred CCCCCCcccccCCCCCCeEEEecCCCCCC
Q 003193 368 GQSNASLGELKQLSRLTTLEVHIPDAQVM 396 (840)
Q Consensus 368 ~~~~~~l~~l~~l~~L~~L~l~~~~~~~~ 396 (840)
.+..+..+++|+.|++++|.+..+
T Consensus 199 -----~~~~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 199 -----EIPNLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp -----SCCCCTTCSSCCEEECTTSCCCEE
T ss_pred -----cccccCCCcccCEEECCCCccCcc
Confidence 223466777888888887776544
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=3.2e-19 Score=191.52 Aligned_cols=280 Identities=20% Similarity=0.197 Sum_probs=189.3
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-hhcCCCCCCEEEccCCccCC--cccccCCCCCCE
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEI 306 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~ 306 (840)
.++.....+.+++.+. .+|..++ ++|++|++++|.++.+|. .+.++++|++|++++|.++. +..++++++|++
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 3445555677766665 6777553 589999999999998866 79999999999999999888 567999999999
Q ss_pred EeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCc-ccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCC
Q 003193 307 LSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRP-NVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLT 384 (840)
Q Consensus 307 L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~ 384 (840)
|++++|+++.+|.. ++++++|++|++++ +.+..+|. ..++++++|++|++++|...... ....+.++++|+
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~------~~~~~~~l~~L~ 177 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTFTKI------QRKDFAGLTFLE 177 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE------CTTTTTTCCEEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCC-CCCcccCchhhhccCCCCcEEECCCCcccccc------CHHHccCCCCCC
Confidence 99999999999877 89999999999999 57888887 55889999999999988422121 124567788899
Q ss_pred eEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeecccccccccc
Q 003193 385 TLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVV 464 (840)
Q Consensus 385 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 464 (840)
.|++++|.+..... ..+...++++.|+++++.....+..+...+++|+.|+++++......+
T Consensus 178 ~L~l~~n~l~~~~~------------------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 239 (353)
T 2z80_A 178 ELEIDASDLQSYEP------------------KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF 239 (353)
T ss_dssp EEEEEETTCCEECT------------------TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC
T ss_pred EEECCCCCcCccCH------------------HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc
Confidence 99999887654421 223444556667777777667776666667888888888876443322
Q ss_pred ccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCC
Q 003193 465 HELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHR 544 (840)
Q Consensus 465 ~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 544 (840)
..+......+.++.+++.++. +.+ ..+..++. ....+++|+.|+++++ +
T Consensus 240 ~~l~~~~~~~~l~~l~L~~~~----------------------l~~-~~l~~l~~-------~l~~l~~L~~L~Ls~N-~ 288 (353)
T 2z80_A 240 SELSTGETNSLIKKFTFRNVK----------------------ITD-ESLFQVMK-------LLNQISGLLELEFSRN-Q 288 (353)
T ss_dssp C------CCCCCCEEEEESCB----------------------CCH-HHHHHHHH-------HHHTCTTCCEEECCSS-C
T ss_pred cccccccccchhhcccccccc----------------------ccC-cchhhhHH-------HHhcccCCCEEECCCC-C
Confidence 222111223444555544432 111 01111111 1235667777777765 4
Q ss_pred cccccchhHHhhcccccEEEEecccc
Q 003193 545 VKHLFPFSLVKNLLQLQKVKVTDCTN 570 (840)
Q Consensus 545 L~~l~~~~~~~~l~~L~~L~i~~c~~ 570 (840)
++.+++ ..+..+++|++|++++++-
T Consensus 289 l~~i~~-~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 289 LKSVPD-GIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCCCCT-TTTTTCTTCCEEECCSSCB
T ss_pred CCccCH-HHHhcCCCCCEEEeeCCCc
Confidence 555543 2335677777777777653
No 57
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=1.1e-21 Score=227.21 Aligned_cols=130 Identities=20% Similarity=0.229 Sum_probs=70.9
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCC-CCCC--CChhhcCCCCCCEEEccCCccCC--cccc----cC
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGF-RFHS--LPSSLGCLINLRTLSLENCLVVD--VAII----GD 300 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~~~~--lp~~l~~l~~L~~L~L~~~~~~~--~~~i----~~ 300 (840)
.+++|+.|+++++.+....+..+...+++|++|++++| .++. ++..+.++++|++|++++|.+++ +..+ ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 35566666666665544333333334666677776666 3332 44444466667777776666544 2222 24
Q ss_pred CCCCCEEeecCCC--Cc--ccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCC
Q 003193 301 LKKLEILSLKHSS--IE--QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS 360 (840)
Q Consensus 301 L~~L~~L~l~~~~--l~--~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~ 360 (840)
+++|++|++++|. +. .++.-+.++++|++|++++|..+..++.. +.++++|++|++..+
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGY 245 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBC
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccc
Confidence 5566666666664 21 22222344566666666665555554433 556666666665543
No 58
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=4.8e-22 Score=222.41 Aligned_cols=158 Identities=21% Similarity=0.210 Sum_probs=100.8
Q ss_pred CcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCC-----CCChhhcCCCCCCEEEccCCccCC--cccc-cCCC-
Q 003193 232 LKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-----SLPSSLGCLINLRTLSLENCLVVD--VAII-GDLK- 302 (840)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-----~lp~~l~~l~~L~~L~L~~~~~~~--~~~i-~~L~- 302 (840)
+++++|+++++.+.......++..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+ +..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 456777777766554333444677788888888888876 456777788888888888887765 3333 2344
Q ss_pred ---CCCEEeecCCCCc-----ccChhhcCCCCCCEEEccCCCCCCccCc-----ccccCCCCCcEEEccCCcccceecCC
Q 003193 303 ---KLEILSLKHSSIE-----QLPREIGQLTCLKLLDLSNCSKLKEIRP-----NVISNLTRLEELYMGNSFTQWKVEGQ 369 (840)
Q Consensus 303 ---~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~L~~~~~l~~~p~-----~~l~~L~~L~~L~l~~~~~~~~~~~~ 369 (840)
+|++|++++|.++ .+|..+.++++|++|++++| .+..... ......++|++|++++|.+.....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-- 159 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC-- 159 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH--
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH--
Confidence 6888888888777 45777788888888888884 3443211 112235578888888775542110
Q ss_pred CCCCcccccCCCCCCeEEEecCCC
Q 003193 370 SNASLGELKQLSRLTTLEVHIPDA 393 (840)
Q Consensus 370 ~~~~l~~l~~l~~L~~L~l~~~~~ 393 (840)
......+..+++|+.|++++|.+
T Consensus 160 -~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 160 -EPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp -HHHHHHHHHCTTCCEEECCSSBC
T ss_pred -HHHHHHHhhCCCCCEEECcCCCc
Confidence 00113345566777777766543
No 59
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=5e-20 Score=193.66 Aligned_cols=152 Identities=16% Similarity=0.254 Sum_probs=124.4
Q ss_pred CcceeEeeccCcccc--CCCchhhcCCCCCcEEEcCC-CCCC-CCChhhcCCCCCCEEEccCCccCC--cccccCCCCCC
Q 003193 232 LKLKLFLFFTENLSL--QIPDPFFEGMTELRVLDLTG-FRFH-SLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLE 305 (840)
Q Consensus 232 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~Lr~L~l~~-~~~~-~lp~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~ 305 (840)
.+++.|+++++.+.+ .+|..+ .++++|++|++++ |.+. .+|..++++++|++|++++|.+.. |..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 578999999999887 777765 8899999999995 7776 689999999999999999999874 78899999999
Q ss_pred EEeecCCCCc-ccChhhcCCCCCCEEEccCCCCCC-ccCcccccCCC-CCcEEEccCCcccceecCCCCCCcccccCCCC
Q 003193 306 ILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLK-EIRPNVISNLT-RLEELYMGNSFTQWKVEGQSNASLGELKQLSR 382 (840)
Q Consensus 306 ~L~l~~~~l~-~lp~~i~~L~~L~~L~L~~~~~l~-~~p~~~l~~L~-~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~ 382 (840)
+|++++|.++ .+|..++++++|++|++++| .+. .+|.. +++++ +|++|++++|.+....+ ..+..++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~-------~~~~~l~- 198 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDS-YGSFSKLFTSMTISRNRLTGKIP-------PTFANLN- 198 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGG-GGCCCTTCCEEECCSSEEEEECC-------GGGGGCC-
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHH-HhhhhhcCcEEECcCCeeeccCC-------hHHhCCc-
Confidence 9999999888 78889999999999999994 555 67766 78887 99999999987654333 4455555
Q ss_pred CCeEEEecCCCC
Q 003193 383 LTTLEVHIPDAQ 394 (840)
Q Consensus 383 L~~L~l~~~~~~ 394 (840)
|+.|++++|.+.
T Consensus 199 L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 199 LAFVDLSRNMLE 210 (313)
T ss_dssp CSEEECCSSEEE
T ss_pred ccEEECcCCccc
Confidence 888888766543
No 60
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=1.3e-21 Score=226.65 Aligned_cols=130 Identities=19% Similarity=0.216 Sum_probs=84.4
Q ss_pred hcCCCCCcEEEcCCCCCCC-CChhhc-CCCCCCEEEccCC-ccCC--c-ccccCCCCCCEEeecCCCCcc-----cChhh
Q 003193 253 FEGMTELRVLDLTGFRFHS-LPSSLG-CLINLRTLSLENC-LVVD--V-AIIGDLKKLEILSLKHSSIEQ-----LPREI 321 (840)
Q Consensus 253 ~~~l~~Lr~L~l~~~~~~~-lp~~l~-~l~~L~~L~L~~~-~~~~--~-~~i~~L~~L~~L~l~~~~l~~-----lp~~i 321 (840)
...+++|++|++++|.++. .+..+. .+++|++|++++| .+.. . ..+.++++|++|++++|.++. ++...
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 4567889999999888763 344454 6889999999888 4444 3 334478889999998887653 33333
Q ss_pred cCCCCCCEEEccCCCCCCccCccc----ccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecC
Q 003193 322 GQLTCLKLLDLSNCSKLKEIRPNV----ISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIP 391 (840)
Q Consensus 322 ~~L~~L~~L~L~~~~~l~~~p~~~----l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~ 391 (840)
..+++|++|++++|. ..++... +.++++|++|++++|..... ....+..+++|+.|++..+
T Consensus 181 ~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-------l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 181 DTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEK-------LATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp TTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-------HHHHHHHCTTCSEEECSBC
T ss_pred hcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-------HHHHHhcCCcceEcccccc
Confidence 467788888888864 2232221 24468888888887732111 1134456677887776543
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=9e-19 Score=181.88 Aligned_cols=175 Identities=19% Similarity=0.292 Sum_probs=146.0
Q ss_pred CcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCC
Q 003193 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENC 290 (840)
Q Consensus 212 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~ 290 (840)
.+.++.+++.+..+|... .++++.|++++|.+.. ++...|..+++|++|++++|.++.+ |..+.++++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCc-cCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 367888888888888654 5789999999998874 5555568999999999999999876 778999999999999999
Q ss_pred c-cCC--cccccCCCCCCEEeecCCCCccc-ChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccccee
Q 003193 291 L-VVD--VAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (840)
Q Consensus 291 ~-~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 366 (840)
. +.. +..++++++|++|++++|.++.+ |..+.++++|++|++++ +.+..++...++++++|++|++++|.+....
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEECCCCcccccC
Confidence 7 776 67899999999999999999977 56688999999999999 6788888777899999999999999765322
Q ss_pred cCCCCCCcccccCCCCCCeEEEecCCCCCC
Q 003193 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVM 396 (840)
Q Consensus 367 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~ 396 (840)
. ..+..+++|+.|++++|.+...
T Consensus 170 ~-------~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 170 E-------RAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp T-------TTTTTCTTCCEEECCSSCCCEE
T ss_pred H-------HHhcCccccCEEECCCCccccc
Confidence 1 3467788999999998876644
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=192.37 Aligned_cols=234 Identities=20% Similarity=0.276 Sum_probs=186.6
Q ss_pred ecCccchhhhhhccCCCcEEEeccCCcccCCcc-c-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC
Q 003193 196 QNVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP 273 (840)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp 273 (840)
..+..+..+|.....+++.|++++|.+..++.. + .+++|++|++++|.+. .++...|.++++|++|++++|.++.+|
T Consensus 50 c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~ 128 (440)
T 3zyj_A 50 CVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIP 128 (440)
T ss_dssp CCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCC
T ss_pred eCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeC
Confidence 345567777877889999999999999877643 3 7999999999999876 455566799999999999999999987
Q ss_pred h-hhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCC-CCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccC
Q 003193 274 S-SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHS-SIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISN 348 (840)
Q Consensus 274 ~-~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~-~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~ 348 (840)
. .+..+++|++|++++|.+.. +..+.++++|++|++++| .+..+|. .+.++++|++|++++ +.+..+|. +..
T Consensus 129 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~~ 205 (440)
T 3zyj_A 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM-CNLREIPN--LTP 205 (440)
T ss_dssp TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT-SCCSSCCC--CTT
T ss_pred HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC-CcCccccc--cCC
Confidence 6 68999999999999999988 457999999999999995 7777775 589999999999999 68888885 899
Q ss_pred CCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceE
Q 003193 349 LTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTL 428 (840)
Q Consensus 349 L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L 428 (840)
+++|++|++++|.+....+ ..+.++++|+.|++++|.+..++... +..
T Consensus 206 l~~L~~L~Ls~N~l~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~~------------------~~~------- 253 (440)
T 3zyj_A 206 LIKLDELDLSGNHLSAIRP-------GSFQGLMHLQKLWMIQSQIQVIERNA------------------FDN------- 253 (440)
T ss_dssp CSSCCEEECTTSCCCEECT-------TTTTTCTTCCEEECTTCCCCEECTTS------------------STT-------
T ss_pred CcccCEEECCCCccCccCh-------hhhccCccCCEEECCCCceeEEChhh------------------hcC-------
Confidence 9999999999998764333 56778899999999988776543321 111
Q ss_pred EEeeCCCccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCC
Q 003193 429 KLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP 485 (840)
Q Consensus 429 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~ 485 (840)
+++|+.|+|++|......+..+ ..+++|+.|++++|+
T Consensus 254 -----------------l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 254 -----------------LQSLVEINLAHNNLTLLPHDLF---TPLHHLERIHLHHNP 290 (440)
T ss_dssp -----------------CTTCCEEECTTSCCCCCCTTTT---SSCTTCCEEECCSSC
T ss_pred -----------------CCCCCEEECCCCCCCccChhHh---ccccCCCEEEcCCCC
Confidence 3566667777665443333333 567888888888886
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=6.8e-18 Score=192.12 Aligned_cols=256 Identities=20% Similarity=0.149 Sum_probs=185.8
Q ss_pred CCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccC
Q 003193 210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN 289 (840)
Q Consensus 210 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~ 289 (840)
.+++.++++++.+..+|..+. ++|++|++++|.+. .+|. .+++|++|++++|.++.+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC
Confidence 357888999999888887665 78999999988876 5664 57889999999999988887 678899999999
Q ss_pred CccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCC
Q 003193 290 CLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQ 369 (840)
Q Consensus 290 ~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~ 369 (840)
|.++..+. .+.+|++|++++|+++.+|.. +++|++|++++ +.+..+|. .+.+|+.|++++|.+..
T Consensus 111 N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~-N~l~~l~~----~~~~L~~L~L~~N~l~~----- 175 (622)
T 3g06_A 111 NPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPA----LPSELCKLWAYNNQLTS----- 175 (622)
T ss_dssp CCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS-SCCSCCCC----CCTTCCEEECCSSCCSC-----
T ss_pred CcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcC-CcCCCcCC----ccCCCCEEECCCCCCCC-----
Confidence 98888322 678899999999999888864 48899999998 57777764 24678889998886642
Q ss_pred CCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcc
Q 003193 370 SNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRT 449 (840)
Q Consensus 370 ~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L 449 (840)
+. ..+++|+.|++++|.+..++.. ..+|+.| .+.++....+|.. +++|
T Consensus 176 ----l~--~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L--------------------~L~~N~l~~l~~~----~~~L 223 (622)
T 3g06_A 176 ----LP--MLPSGLQELSVSDNQLASLPTL--PSELYKL--------------------WAYNNRLTSLPAL----PSGL 223 (622)
T ss_dssp ----CC--CCCTTCCEEECCSSCCSCCCCC--CTTCCEE--------------------ECCSSCCSSCCCC----CTTC
T ss_pred ----Cc--ccCCCCcEEECCCCCCCCCCCc--cchhhEE--------------------ECcCCcccccCCC----CCCC
Confidence 11 3457888899988887766542 2344444 4444444444432 3678
Q ss_pred cceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCCCc
Q 003193 450 EDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDK 529 (840)
Q Consensus 450 ~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~ 529 (840)
+.|++++|.. +.++ ..+++|+.|++++|. +..++ ..+++|+.|+++++ +++.++.. ..
T Consensus 224 ~~L~Ls~N~L-~~lp------~~l~~L~~L~Ls~N~-L~~lp------~~~~~L~~L~Ls~N-~L~~lp~~-------l~ 281 (622)
T 3g06_A 224 KELIVSGNRL-TSLP------VLPSELKELMVSGNR-LTSLP------MLPSGLLSLSVYRN-QLTRLPES-------LI 281 (622)
T ss_dssp CEEECCSSCC-SCCC------CCCTTCCEEECCSSC-CSCCC------CCCTTCCEEECCSS-CCCSCCGG-------GG
T ss_pred CEEEccCCcc-CcCC------CCCCcCcEEECCCCC-CCcCC------cccccCcEEeCCCC-CCCcCCHH-------Hh
Confidence 8888887743 3333 346788899988885 33322 15778999999885 56655422 45
Q ss_pred ccCCccEEEEecCC
Q 003193 530 SFSNLRIIKVEGCH 543 (840)
Q Consensus 530 ~~~~L~~L~l~~c~ 543 (840)
.+++|+.|++++++
T Consensus 282 ~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 282 HLSSETTVNLEGNP 295 (622)
T ss_dssp GSCTTCEEECCSCC
T ss_pred hccccCEEEecCCC
Confidence 78999999999876
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=2e-18 Score=191.81 Aligned_cols=233 Identities=22% Similarity=0.253 Sum_probs=183.7
Q ss_pred cCccchhhhhhccCCCcEEEeccCCcccCCcc-c-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh
Q 003193 197 NVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS 274 (840)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~ 274 (840)
.+..+..+|...+.+++.|++++|.+..++.. + .+++|+.|++++|.+.. ++...|.++++|++|++++|.++.+|.
T Consensus 62 ~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~ 140 (452)
T 3zyi_A 62 TRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDNWLTVIPS 140 (452)
T ss_dssp CSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSBCCT
T ss_pred CCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC-cChhhccCcccCCEEECCCCcCCccCh
Confidence 44566777777788999999999999877543 3 79999999999998874 444556899999999999999998875
Q ss_pred h-hcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCC-CCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccCC
Q 003193 275 S-LGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHS-SIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNL 349 (840)
Q Consensus 275 ~-l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~-~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L 349 (840)
. +..+++|++|++++|.+.. +..+.++++|++|++++| .+..+|. .+..+++|++|++++ +.+..+|. +..+
T Consensus 141 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~~l 217 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM-CNIKDMPN--LTPL 217 (452)
T ss_dssp TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT-SCCSSCCC--CTTC
T ss_pred hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC-Cccccccc--cccc
Confidence 4 8899999999999999988 457999999999999995 7888876 588999999999999 67888875 8999
Q ss_pred CCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEE
Q 003193 350 TRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLK 429 (840)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~ 429 (840)
++|++|++++|.+....+ ..+.++++|+.|++++|.+..++... +..
T Consensus 218 ~~L~~L~Ls~N~l~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~~------------------~~~-------- 264 (452)
T 3zyi_A 218 VGLEELEMSGNHFPEIRP-------GSFHGLSSLKKLWVMNSQVSLIERNA------------------FDG-------- 264 (452)
T ss_dssp TTCCEEECTTSCCSEECG-------GGGTTCTTCCEEECTTSCCCEECTTT------------------TTT--------
T ss_pred ccccEEECcCCcCcccCc-------ccccCccCCCEEEeCCCcCceECHHH------------------hcC--------
Confidence 999999999998764333 66888999999999988776543221 111
Q ss_pred EeeCCCccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCC
Q 003193 430 LQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP 485 (840)
Q Consensus 430 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~ 485 (840)
+++|+.|+|++|......+..+ ..+++|+.|++++|+
T Consensus 265 ----------------l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 265 ----------------LASLVELNLAHNNLSSLPHDLF---TPLRYLVELHLHHNP 301 (452)
T ss_dssp ----------------CTTCCEEECCSSCCSCCCTTSS---TTCTTCCEEECCSSC
T ss_pred ----------------CCCCCEEECCCCcCCccChHHh---ccccCCCEEEccCCC
Confidence 3456666666664432222233 567788888888776
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=2.8e-18 Score=180.18 Aligned_cols=229 Identities=17% Similarity=0.198 Sum_probs=179.8
Q ss_pred cCccchhhhhhccCCCcEEEeccCCcccCCccc--CCCcceeEeeccCccccC--CCchhhcCCCCCcEEEcCCCCCCCC
Q 003193 197 NVADLKEELDKIDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQ--IPDPFFEGMTELRVLDLTGFRFHSL 272 (840)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~--~~~~~~~~l~~Lr~L~l~~~~~~~l 272 (840)
.+..+..+|...+.++++|++++|.+..+|... .+++|++|++++|.+... .+..+ ..+++|++|++++|.+..+
T Consensus 15 ~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l 93 (306)
T 2z66_A 15 NSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITM 93 (306)
T ss_dssp CSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEE
T ss_pred CCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccccC
Confidence 344566667767789999999999999888753 899999999999987522 24444 5799999999999999999
Q ss_pred ChhhcCCCCCCEEEccCCccCC-c--ccccCCCCCCEEeecCCCCccc-ChhhcCCCCCCEEEccCCCCCCc--cCcccc
Q 003193 273 PSSLGCLINLRTLSLENCLVVD-V--AIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKE--IRPNVI 346 (840)
Q Consensus 273 p~~l~~l~~L~~L~L~~~~~~~-~--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~--~p~~~l 346 (840)
|..+..+++|++|++++|.+.. + ..+.++++|++|++++|.++.. |..+..+++|++|++++| .+.. +|.. +
T Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~ 171 (306)
T 2z66_A 94 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDI-F 171 (306)
T ss_dssp EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC-EEGGGEECSC-C
T ss_pred hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC-ccccccchhH-H
Confidence 9999999999999999999887 3 5799999999999999998855 566889999999999995 5554 5554 8
Q ss_pred cCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcc--cccCcceEEEEEcCccC----CCC
Q 003193 347 SNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGDVWS----WSD 420 (840)
Q Consensus 347 ~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~----~~~ 420 (840)
+.+++|++|++++|.+....+ ..+..+++|+.|++++|.+..++... .+++|+.|++..+.... .+.
T Consensus 172 ~~l~~L~~L~Ls~n~l~~~~~-------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 172 TELRNLTFLDLSQCQLEQLSP-------TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp TTCTTCCEEECTTSCCCEECT-------TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred hhCcCCCEEECCCCCcCCcCH-------HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 999999999999997754322 56678899999999999988776532 56778888776554322 223
Q ss_pred Cc-cccceEEEeeCCC
Q 003193 421 GY-ETSKTLKLQLNNS 435 (840)
Q Consensus 421 ~~-~~l~~L~l~~~~~ 435 (840)
.. ++++.++++++..
T Consensus 245 ~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CCCTTCCEEECTTCCE
T ss_pred hhhccCCEEEccCCCe
Confidence 33 3566666666543
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=1.7e-17 Score=188.91 Aligned_cols=245 Identities=18% Similarity=0.088 Sum_probs=178.9
Q ss_pred ccchhhhhhccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcC
Q 003193 199 ADLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGC 278 (840)
Q Consensus 199 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~ 278 (840)
..+..+|....++++.|++++|.+..+|. .+++|++|++++|.+. .+|. .+++|++|++++|.++.+|. .
T Consensus 50 n~L~~lp~~l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~---~ 119 (622)
T 3g06_A 50 SGLTTLPDCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPA---L 119 (622)
T ss_dssp SCCSCCCSCCCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCCCCC---C
T ss_pred CCcCccChhhCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCCCCC---C
Confidence 44555666566899999999999998887 6899999999999876 5665 68999999999999999987 6
Q ss_pred CCCCCEEEccCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEc
Q 003193 279 LINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM 357 (840)
Q Consensus 279 l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l 357 (840)
+.+|++|++++|.++. |.. +++|++|++++|+++.+|. .+.+|+.|++++ +.+..+| ..+++|+.|++
T Consensus 120 l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~-N~l~~l~----~~~~~L~~L~L 188 (622)
T 3g06_A 120 PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYN-NQLTSLP----MLPSGLQELSV 188 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCC----CCCTTCCEEEC
T ss_pred CCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCC-CCCCCCc----ccCCCCcEEEC
Confidence 7899999999999988 543 4899999999999999986 457899999999 6788887 34789999999
Q ss_pred cCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCcc
Q 003193 358 GNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTY 437 (840)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~ 437 (840)
++|.+.. ++ ..+++|+.|++++|.+..++.. +++|+.|++..+.+......+++|+.|+++++....
T Consensus 189 s~N~l~~-l~----------~~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~ 255 (622)
T 3g06_A 189 SDNQLAS-LP----------TLPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS 255 (622)
T ss_dssp CSSCCSC-CC----------CCCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC
T ss_pred CCCCCCC-CC----------CccchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCCc
Confidence 9997652 11 1247899999999988877753 366777776655443333344555555555555444
Q ss_pred chhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCC
Q 003193 438 LGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP 485 (840)
Q Consensus 438 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~ 485 (840)
+|. .+++|+.|++++|... .+|..+ ..+++|+.|++++|+
T Consensus 256 lp~----~~~~L~~L~Ls~N~L~-~lp~~l---~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 256 LPM----LPSGLLSLSVYRNQLT-RLPESL---IHLSSETTVNLEGNP 295 (622)
T ss_dssp CCC----CCTTCCEEECCSSCCC-SCCGGG---GGSCTTCEEECCSCC
T ss_pred CCc----ccccCcEEeCCCCCCC-cCCHHH---hhccccCEEEecCCC
Confidence 443 2345555555555332 344433 445555555555554
No 67
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.76 E-value=1.2e-18 Score=219.96 Aligned_cols=172 Identities=17% Similarity=0.240 Sum_probs=142.9
Q ss_pred CCCCceEEccC-CCHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHhCCCchhHHHHHHHhcCCCHHHHHHHHHHhhcCCC
Q 003193 4 YEYSEDFLDWL-LSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNP 82 (840)
Q Consensus 4 ~~~~~~~~l~~-L~~~~s~~Lf~~~a~~~~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~ 82 (840)
++....|+++. |+++|||+||.+.|+. ..+++.+++++|+++|+|+||||+++|+.|+.+. .+|+..++.+.....
T Consensus 274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~--~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~ 350 (1249)
T 3sfz_A 274 MGPKHVVPVESGLGREKGLEILSLFVNM--KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQF 350 (1249)
T ss_dssp CSCBCCEECCSSCCHHHHHHHHHHHHTS--CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCC
T ss_pred cCCceEEEecCCCCHHHHHHHHHHhhCC--ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhh
Confidence 56778999996 9999999999999963 2355678899999999999999999999999765 479999999977664
Q ss_pred CCccccc----cc-ccceeecccccCchhhhhHHHhccCCCCCCccCHHHHHHHHhhcccccccchHHHHHHHHHHHHHH
Q 003193 83 RKIQGMD----AD-LSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDN 157 (840)
Q Consensus 83 ~~~~~~~----~~-~~~l~lSY~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~wia~gfi~~~~~~~~~~~~~~~~~~~ 157 (840)
..+.... +. ..++.+||+.||++ .|+||+|||+||+++.|+++.++.+|.+++ +.+.+++++
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~~l~~ 417 (1249)
T 3sfz_A 351 KRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVEDILQE 417 (1249)
T ss_dssp CCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHHHHHH
T ss_pred hhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH------------HHHHHHHHH
Confidence 3333221 12 78999999999998 999999999999999999999999997763 234568999
Q ss_pred HhhccccccCCC--CCceEeehhHHHHHHHHHhhce
Q 003193 158 LKSASLLFDGDS--EDHAKMHRIIHAIAVSIAAEKL 191 (840)
Q Consensus 158 L~~~~l~~~~~~--~~~~~mhdli~~l~~~i~~~e~ 191 (840)
|+++||++.... ...|+|||++|++|+..+.++.
T Consensus 418 L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 418 FVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQL 453 (1249)
T ss_dssp HHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGGH
T ss_pred HHhccceEEecCCCceEEEecHHHHHHHHhhhhHHH
Confidence 999999986532 2359999999999999877653
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=4.1e-17 Score=167.62 Aligned_cols=191 Identities=24% Similarity=0.387 Sum_probs=144.3
Q ss_pred CCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChh-hcCCCCCCEEEcc
Q 003193 210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLE 288 (840)
Q Consensus 210 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-l~~l~~L~~L~L~ 288 (840)
...+.++++++.+..+|..+. ++++.|++++|.+. .++...|.++++|++|++++|.++.+|.. +.++++|++|+++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 356788888888888876553 67888888888876 45555568888899999988888888765 4778889999998
Q ss_pred CCccCC--cccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccce
Q 003193 289 NCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWK 365 (840)
Q Consensus 289 ~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~ 365 (840)
+|.+.. +..++++++|++|++++|.++.+|.. ++.+++|++|++++ +.+..+|...++.+++|++|++++|.+...
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 888887 35678888899999988888877654 68888899999888 577888877678888899998888866432
Q ss_pred ecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcc--cccCcceEEE
Q 003193 366 VEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRI 410 (840)
Q Consensus 366 ~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l 410 (840)
.+ ..+.++++|+.|++++|.+..++... .+++|+.|++
T Consensus 173 ~~-------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 173 PE-------GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp CT-------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred Ch-------hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence 11 34667788888888888877666542 3444444444
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=4e-17 Score=167.73 Aligned_cols=188 Identities=25% Similarity=0.393 Sum_probs=161.1
Q ss_pred CccchhhhhhccCCCcEEEeccCCcccCCcc-c-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-
Q 003193 198 VADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS- 274 (840)
Q Consensus 198 ~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~- 274 (840)
+..+..+|...+.++++|++++|.+..++.. + .+++|++|++++|.+. .++..+|.++++|++|++++|.++.+|.
T Consensus 25 ~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~ 103 (270)
T 2o6q_A 25 SKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIG 103 (270)
T ss_dssp TSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHh
Confidence 4456666766778999999999999888763 3 7999999999999876 6777888999999999999999998865
Q ss_pred hhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCC
Q 003193 275 SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351 (840)
Q Consensus 275 ~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~ 351 (840)
.+..+++|++|++++|.+.. +..++++++|++|++++|.++.+|.. +..+++|++|++++ +.+..+++..+.++++
T Consensus 104 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~ 182 (270)
T 2o6q_A 104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTE 182 (270)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTT
T ss_pred HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC-CcCcEeChhHhccCCC
Confidence 56899999999999999988 45689999999999999999999876 78999999999999 6788888877899999
Q ss_pred CcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCC
Q 003193 352 LEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (840)
Q Consensus 352 L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 394 (840)
|++|++++|.+....+ ..+..+++|+.|++++|...
T Consensus 183 L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 183 LKTLKLDNNQLKRVPE-------GAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCEEECCSSCCSCCCT-------TTTTTCTTCCEEECCSSCBC
T ss_pred cCEEECCCCcCCcCCH-------HHhccccCCCEEEecCCCee
Confidence 9999999997653221 34677889999999988654
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.74 E-value=2.4e-17 Score=170.84 Aligned_cols=192 Identities=21% Similarity=0.214 Sum_probs=156.3
Q ss_pred ccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEc
Q 003193 208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L 287 (840)
...+++.++++++.+..+|..+. ++++.|++++|.+.. ++...|.++++|++|++++|.++.+|.. +.+++|++|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred ccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCc-cCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 45678899999999988887653 789999999998764 4444568899999999999999887654 78999999999
Q ss_pred cCCccCC-cccccCCCCCCEEeecCCCCcccC-hhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccce
Q 003193 288 ENCLVVD-VAIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWK 365 (840)
Q Consensus 288 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~ 365 (840)
++|.+.. |..+..+++|++|++++|+++.+| ..+..+++|++|++++ +.+..+|++.+..+++|++|++++|.+...
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 9999988 778889999999999999999887 4588999999999999 678888888788999999999999877532
Q ss_pred ecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcc-cccCcceEEE
Q 003193 366 VEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRI 410 (840)
Q Consensus 366 ~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l 410 (840)
.. ..+..+++|+.|++++|.+..+|..+ ...+|+.+.+
T Consensus 164 ~~-------~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 164 PA-------GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202 (290)
T ss_dssp CT-------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEEC
T ss_pred CH-------HHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEe
Confidence 21 34567889999999999888777654 3444555444
No 71
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=1.5e-19 Score=202.13 Aligned_cols=150 Identities=17% Similarity=0.212 Sum_probs=72.7
Q ss_pred CCcEEEeccCCcccCCcc--c-CCCcceeEeeccCccccC----CCchhhcCCCCCcEEEcCCCCCCCC-Chhh-cCCC-
Q 003193 211 APTAISIPFRGIYELPER--L-GFLKLKLFLFFTENLSLQ----IPDPFFEGMTELRVLDLTGFRFHSL-PSSL-GCLI- 280 (840)
Q Consensus 211 ~l~~L~l~~~~~~~l~~~--~-~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l-~~l~- 280 (840)
++++|+++++.+...+.. + .+++|++|++++|.+... ++ ..+..+++|++|++++|.+... +..+ ..+.
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 355566665555332211 1 455666666666554321 11 2234556666666666655421 1122 2233
Q ss_pred ---CCCEEEccCCccCC------cccccCCCCCCEEeecCCCCccc-Chhh-----cCCCCCCEEEccCCCCCCccC---
Q 003193 281 ---NLRTLSLENCLVVD------VAIIGDLKKLEILSLKHSSIEQL-PREI-----GQLTCLKLLDLSNCSKLKEIR--- 342 (840)
Q Consensus 281 ---~L~~L~L~~~~~~~------~~~i~~L~~L~~L~l~~~~l~~l-p~~i-----~~L~~L~~L~L~~~~~l~~~p--- 342 (840)
+|++|++++|.+.. +..+.++++|++|++++|.++.. +..+ ...++|++|++++| .+....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~ 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEP 161 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHH
Confidence 46666666666552 44555666666666666655421 1111 12345666666663 333211
Q ss_pred -cccccCCCCCcEEEccCCcc
Q 003193 343 -PNVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 343 -~~~l~~L~~L~~L~l~~~~~ 362 (840)
...+..+++|++|++++|.+
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHhhCCCCCEEECcCCCc
Confidence 11144456666666666543
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=1.4e-18 Score=182.68 Aligned_cols=180 Identities=16% Similarity=0.242 Sum_probs=106.3
Q ss_pred CcEEEeccCCccc--CCccc--------CCCcceeEeeccCccccCCCchhh-cCCCCCcEEEcCCCCCCCCChhhcCC-
Q 003193 212 PTAISIPFRGIYE--LPERL--------GFLKLKLFLFFTENLSLQIPDPFF-EGMTELRVLDLTGFRFHSLPSSLGCL- 279 (840)
Q Consensus 212 l~~L~l~~~~~~~--l~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~Lr~L~l~~~~~~~lp~~l~~l- 279 (840)
+++|++++|.+.. ++... .+++|++|++++|.+.+.+|..+| ..+++|++|++++|.++.+|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 5555555555522 33322 366777777777766666666543 66677777777777776666666665
Q ss_pred ----CCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcc---cChhh--cCCCCCCEEEccCCCCCCc---cCccc
Q 003193 280 ----INLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQ---LPREI--GQLTCLKLLDLSNCSKLKE---IRPNV 345 (840)
Q Consensus 280 ----~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~---lp~~i--~~L~~L~~L~L~~~~~l~~---~p~~~ 345 (840)
++|++|++++|.+.. +..++++++|++|++++|++.. +|..+ +++++|++|++++ +.+.. ++...
T Consensus 145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN-AGMETPSGVCSAL 223 (312)
T ss_dssp TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTT-SCCCCHHHHHHHH
T ss_pred HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCC-CcCcchHHHHHHH
Confidence 677777777777666 3566777777777777776542 34444 6667777777776 34552 23333
Q ss_pred ccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCC
Q 003193 346 ISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQ 398 (840)
Q Consensus 346 l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 398 (840)
+.++++|++|++++|.+....+ ...+..+++|+.|++++|.+..+|.
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~------~~~~~~l~~L~~L~Ls~N~l~~ip~ 270 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAG------APSCDWPSQLNSLNLSFTGLKQVPK 270 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCC------CSCCCCCTTCCEEECTTSCCSSCCS
T ss_pred HhcCCCCCEEECCCCcCCcccc------hhhhhhcCCCCEEECCCCccChhhh
Confidence 4566677777777665542110 1233345566666666665554443
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=2.6e-19 Score=188.73 Aligned_cols=246 Identities=17% Similarity=0.113 Sum_probs=157.0
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCCcccccCCCCCCEEee
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSL 309 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l 309 (840)
.+++|++|++++|.+.. ++...|.++++|++|++++|.++..++ +..+++|++|++++|.++.. ...++|++|++
T Consensus 32 ~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l---~~~~~L~~L~l 106 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---LVGPSIETLHA 106 (317)
T ss_dssp TGGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE---EECTTCCEEEC
T ss_pred cCCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc---cCCCCcCEEEC
Confidence 35567777777776653 343445777777777777777765544 67777777777777776551 12367777777
Q ss_pred cCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccc-cCCCCCCeEEE
Q 003193 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGEL-KQLSRLTTLEV 388 (840)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l-~~l~~L~~L~l 388 (840)
++|.++.++.. .+++|++|++++ +.+..+++..++.+++|++|++++|.+..... ..+ ..+++|+.|++
T Consensus 107 ~~n~l~~~~~~--~~~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 107 ANNNISRVSCS--RGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-------AELAASSDTLEHLNL 176 (317)
T ss_dssp CSSCCSEEEEC--CCSSCEEEECCS-SCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG-------GGGGGGTTTCCEEEC
T ss_pred CCCccCCcCcc--ccCCCCEEECCC-CCCCCccchhhhccCCCCEEECCCCCCCcccH-------HHHhhccCcCCEEEC
Confidence 77777766542 366777777777 45666655556677777777777776543221 222 34667777777
Q ss_pred ecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeecccccccccccccc
Q 003193 389 HIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELD 468 (840)
Q Consensus 389 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~ 468 (840)
++|.+..++.... .++++.|+++++....++..+. .+++|+.|++++|... .++..+
T Consensus 177 ~~N~l~~~~~~~~--------------------l~~L~~L~Ls~N~l~~l~~~~~-~l~~L~~L~L~~N~l~-~l~~~~- 233 (317)
T 3o53_A 177 QYNFIYDVKGQVV--------------------FAKLKTLDLSSNKLAFMGPEFQ-SAAGVTWISLRNNKLV-LIEKAL- 233 (317)
T ss_dssp TTSCCCEEECCCC--------------------CTTCCEEECCSSCCCEECGGGG-GGTTCSEEECTTSCCC-EECTTC-
T ss_pred CCCcCcccccccc--------------------cccCCEEECCCCcCCcchhhhc-ccCcccEEECcCCccc-chhhHh-
Confidence 7776655443322 3344445555555555554433 3688999999988544 566666
Q ss_pred chhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccc
Q 003193 469 DEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKV 517 (840)
Q Consensus 469 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~ 517 (840)
..+++|+.|++++|+-... ........+++|+.|.+.+++.++..
T Consensus 234 --~~l~~L~~L~l~~N~~~~~--~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 234 --RFSQNLEHFDLRGNGFHCG--TLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp --CCCTTCCEEECTTCCCBHH--HHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred --hcCCCCCEEEccCCCccCc--CHHHHHhccccceEEECCCchhccCC
Confidence 6789999999999873200 11123367889999999988777654
No 74
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.73 E-value=2.7e-18 Score=196.41 Aligned_cols=144 Identities=17% Similarity=0.176 Sum_probs=118.6
Q ss_pred ceEEcc------CCCHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHhCCCchhHHHHHHHhcCC--CHHHHHHHHHHhhc
Q 003193 8 EDFLDW------LLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNK--SPRIWKDAVNQLSN 79 (840)
Q Consensus 8 ~~~~l~------~L~~~~s~~Lf~~~a~~~~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L~~~--~~~~W~~~l~~l~~ 79 (840)
.+|+|+ +|+++|||+||+++.... ..++.++| |+|+||||+++|+.|+++ +.++|+..
T Consensus 285 ~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~------ 350 (1221)
T 1vt4_I 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV------ 350 (1221)
T ss_dssp SSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC------
T ss_pred eEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC------
Confidence 467888 999999999999985322 34555555 999999999999999976 78889753
Q ss_pred CCCCCcccccccccceeecccccCchhh-hhHHHhccCCCCCCccCHHHHHHHHhhcccccccchHHHHHHHHHHHHHHH
Q 003193 80 SNPRKIQGMDADLSSIELSYEFLKCKEV-KSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNL 158 (840)
Q Consensus 80 ~~~~~~~~~~~~~~~l~lSY~~L~~~~l-k~cfl~~~~fp~~~~i~~~~li~~wia~gfi~~~~~~~~~~~~~~~~~~~L 158 (840)
.......++++||+.||++ . |+||+|||+||+++.|+++.++.+|+++|. + .+.+++++|
T Consensus 351 -------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------e----dAe~~L~eL 411 (1221)
T 1vt4_I 351 -------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------S----DVMVVVNKL 411 (1221)
T ss_dssp -------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------H----HHHHHHHHH
T ss_pred -------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-------H----HHHHHHHHH
Confidence 1111278899999999998 8 999999999999999999999999999981 1 244589999
Q ss_pred hhccccccCCCCCceEeehhHHHHHH
Q 003193 159 KSASLLFDGDSEDHAKMHRIIHAIAV 184 (840)
Q Consensus 159 ~~~~l~~~~~~~~~~~mhdli~~l~~ 184 (840)
+++||++..+....|+|||++++++.
T Consensus 412 vdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 412 HKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 99999987655678999999999663
No 75
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=7e-19 Score=185.50 Aligned_cols=289 Identities=14% Similarity=0.115 Sum_probs=201.0
Q ss_pred ceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-hhhcCCCCCCEEEccCCccCCcccccCCCCCCEEeecCC
Q 003193 234 LKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHS 312 (840)
Q Consensus 234 L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~ 312 (840)
++..++..+.+. ..+..++..+++|++|++++|.++.++ ..+.++++|++|++++|.+.....++.+++|++|++++|
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSS
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCC
Confidence 344444444443 344556678889999999999999875 689999999999999999988334999999999999999
Q ss_pred CCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCC
Q 003193 313 SIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPD 392 (840)
Q Consensus 313 ~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 392 (840)
.++.+|. .++|++|++++ +.+..++. ..+++|++|++++|.+....+ ..+..+++|+.|++++|.
T Consensus 91 ~l~~l~~----~~~L~~L~l~~-n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~-------~~~~~l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 91 YVQELLV----GPSIETLHAAN-NNISRVSC---SRGQGKKNIYLANNKITMLRD-------LDEGCRSRVQYLDLKLNE 155 (317)
T ss_dssp EEEEEEE----CTTCCEEECCS-SCCSEEEE---CCCSSCEEEECCSSCCCSGGG-------BCTGGGSSEEEEECTTSC
T ss_pred ccccccC----CCCcCEEECCC-CccCCcCc---cccCCCCEEECCCCCCCCccc-------hhhhccCCCCEEECCCCC
Confidence 9998773 48999999999 67777765 347899999999997753222 356678899999999988
Q ss_pred CCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeeccccccccccccccchhh
Q 003193 393 AQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEG 472 (840)
Q Consensus 393 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~ 472 (840)
+...+.... ....++++.|+++++.....+.... +++|+.|++++|... .++..+ ..
T Consensus 156 l~~~~~~~~-----------------~~~l~~L~~L~L~~N~l~~~~~~~~--l~~L~~L~Ls~N~l~-~l~~~~---~~ 212 (317)
T 3o53_A 156 IDTVNFAEL-----------------AASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLA-FMGPEF---QS 212 (317)
T ss_dssp CCEEEGGGG-----------------GGGTTTCCEEECTTSCCCEEECCCC--CTTCCEEECCSSCCC-EECGGG---GG
T ss_pred CCcccHHHH-----------------hhccCcCCEEECCCCcCcccccccc--cccCCEEECCCCcCC-cchhhh---cc
Confidence 775432210 1123344555555555444433322 689999999998654 455555 77
Q ss_pred cccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccchh
Q 003193 473 FARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFS 552 (840)
Q Consensus 473 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 552 (840)
+++|++|++++|. +..++ .....+++|+.|++++++--...... ....+++|+.|++.+++.++...+..
T Consensus 213 l~~L~~L~L~~N~-l~~l~---~~~~~l~~L~~L~l~~N~~~~~~~~~------~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 213 AAGVTWISLRNNK-LVLIE---KALRFSQNLEHFDLRGNGFHCGTLRD------FFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp GTTCSEEECTTSC-CCEEC---TTCCCCTTCCEEECTTCCCBHHHHHH------HHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred cCcccEEECcCCc-ccchh---hHhhcCCCCCEEEccCCCccCcCHHH------HHhccccceEEECCCchhccCCchhc
Confidence 9999999999996 44553 34567899999999986532111111 13467888888888776666553321
Q ss_pred HHhhcccccEEEEecccccce
Q 003193 553 LVKNLLQLQKVKVTDCTNLKL 573 (840)
Q Consensus 553 ~~~~l~~L~~L~i~~c~~l~~ 573 (840)
...+.+....-..|..+..
T Consensus 283 --~~~~~~~~~~~~cc~~l~~ 301 (317)
T 3o53_A 283 --CTVPTLGHYGAYCCEDLPA 301 (317)
T ss_dssp --CSSTTCEEETTEEEBCCTT
T ss_pred --cCCCceecccceeeccCCh
Confidence 1223333333445666553
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=1.2e-16 Score=167.26 Aligned_cols=191 Identities=17% Similarity=0.255 Sum_probs=161.1
Q ss_pred hccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEE
Q 003193 207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~ 286 (840)
...+++++|+++++.+..++....+++|++|++++|.+. .++. +..+++|++|++++|.++.+| .+..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 346689999999999988886668999999999999876 3444 689999999999999999886 689999999999
Q ss_pred ccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccccee
Q 003193 287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (840)
Q Consensus 287 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 366 (840)
+++|.+...+.++++++|++|++++|.++.+|. ++.+++|++|++++ +.+..++. ++.+++|++|++++|.+..
T Consensus 114 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~-- 187 (308)
T 1h6u_A 114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGN-AQVSDLTP--LANLSKLTTLKADDNKISD-- 187 (308)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCC--
T ss_pred CCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccC-CcCCCChh--hcCCCCCCEEECCCCccCc--
Confidence 999999885569999999999999999998886 89999999999999 57888776 7999999999999987642
Q ss_pred cCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcC
Q 003193 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGD 414 (840)
Q Consensus 367 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 414 (840)
+..+..+++|+.|++++|.+...+....+++|+.|++..+.
T Consensus 188 -------~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 188 -------ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp -------CGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred -------ChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence 23378889999999999988877654466677777766544
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=4.9e-17 Score=167.86 Aligned_cols=203 Identities=21% Similarity=0.305 Sum_probs=146.8
Q ss_pred ccchhhhhhccCCCcEEEeccCCcccCCc-cc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-hh
Q 003193 199 ADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SS 275 (840)
Q Consensus 199 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~ 275 (840)
..+..+|...+.++++|++++|.+..++. .+ .+++|++|++++|.+. .++...|.++++|++|++++|.++.++ ..
T Consensus 17 ~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 17 LNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp SCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhh
Confidence 34455566566788889998888877764 23 6888888888888766 344445688888888888888888664 66
Q ss_pred hcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcc--cChhhcCCCCCCEEEccCCCCCCccCcccccCCCC
Q 003193 276 LGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351 (840)
Q Consensus 276 l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~ 351 (840)
+.++++|++|++++|.+.. +..++++++|++|++++|.++. +|..++++++|++|++++ +.+..++...+..+++
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQ 174 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHHHHT
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC-CCCCcCCHHHhhhhhh
Confidence 8888888888888888877 3468888888888888888875 678888888888888888 5677777655666666
Q ss_pred Cc----EEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcc--cccCcceEEEE
Q 003193 352 LE----ELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRIC 411 (840)
Q Consensus 352 L~----~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~ 411 (840)
|+ +|++++|.+....+ ......+|+.|++++|.+..++... .+++|+.+++.
T Consensus 175 L~~l~l~L~ls~n~l~~~~~--------~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 175 MPLLNLSLDLSLNPMNFIQP--------GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp CTTCCEEEECCSSCCCEECT--------TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred ccccceeeecCCCcccccCc--------cccCCCcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence 66 78888887653221 1112236888888888877666543 34455554443
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=7.7e-17 Score=166.38 Aligned_cols=176 Identities=23% Similarity=0.306 Sum_probs=130.2
Q ss_pred EEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-hhcCCCCCCEEEccCCcc
Q 003193 214 AISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLV 292 (840)
Q Consensus 214 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~~ 292 (840)
.+.-.+..+..+|..+. +++++|++++|.+.. ++...|.++++|++|++++|.++.++. .+.++++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTCCCCE-ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC-CCccEEECCCCcccc-cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 34455556666776542 578999998888764 444455888999999999998887654 688899999999999988
Q ss_pred CC--cccccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccCCCCCCc--cCcccccCCCCCcEEEccCCcccceec
Q 003193 293 VD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKE--IRPNVISNLTRLEELYMGNSFTQWKVE 367 (840)
Q Consensus 293 ~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~--~p~~~l~~L~~L~~L~l~~~~~~~~~~ 367 (840)
.. +..++++++|++|++++|.++.++. .++++++|++|++++ +.+.. +|.. ++++++|++|++++|.+.....
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcC-CccceecCchh-hccCCCCCEEECCCCCCCcCCH
Confidence 87 4678889999999999998887765 588889999999988 56665 4544 7889999999999887653222
Q ss_pred CCCCCCcccccCCCCCC-eEEEecCCCCCCC
Q 003193 368 GQSNASLGELKQLSRLT-TLEVHIPDAQVMP 397 (840)
Q Consensus 368 ~~~~~~l~~l~~l~~L~-~L~l~~~~~~~~~ 397 (840)
..+..+.+++.|. .|++++|.+..++
T Consensus 167 ----~~~~~l~~L~~l~l~L~ls~n~l~~~~ 193 (276)
T 2z62_A 167 ----TDLRVLHQMPLLNLSLDLSLNPMNFIQ 193 (276)
T ss_dssp ----GGGHHHHTCTTCCEEEECCSSCCCEEC
T ss_pred ----HHhhhhhhccccceeeecCCCcccccC
Confidence 2334455555555 6777777665544
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=2.4e-18 Score=180.92 Aligned_cols=154 Identities=18% Similarity=0.206 Sum_probs=109.1
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCC--CCChhhc-------CCCCCCEEEccCCccCC--cccc
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH--SLPSSLG-------CLINLRTLSLENCLVVD--VAII 298 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~--~lp~~l~-------~l~~L~~L~L~~~~~~~--~~~i 298 (840)
..++|+.+++.+|.+ .+|..+... |++|++++|.+. .+|..+. ++++|++|++++|.+.. |..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 355677777777777 667666433 777888888775 4666665 68888888888888775 5555
Q ss_pred --cCCCCCCEEeecCCCCcccChhhcCC-----CCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCC
Q 003193 299 --GDLKKLEILSLKHSSIEQLPREIGQL-----TCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSN 371 (840)
Q Consensus 299 --~~L~~L~~L~l~~~~l~~lp~~i~~L-----~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 371 (840)
+.+++|++|++++|.++.+|..++.+ ++|++|++++ +.+..+++..++++++|++|++++|.+....+
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---- 190 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVRVFPALSTLDLSDNPELGERG---- 190 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH----
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeC-CCCccchHHHhccCCCCCEEECCCCCcCcchH----
Confidence 78888888888888888778777776 8888888888 56777776557888888888888886432110
Q ss_pred CCcccc--cCCCCCCeEEEecCCCC
Q 003193 372 ASLGEL--KQLSRLTTLEVHIPDAQ 394 (840)
Q Consensus 372 ~~l~~l--~~l~~L~~L~l~~~~~~ 394 (840)
.+..+ ..+++|+.|++++|.+.
T Consensus 191 -~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 191 -LISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp -HHHHSCTTSCTTCCEEECTTSCCC
T ss_pred -HHHHHHhccCCCCCEEECCCCcCc
Confidence 01222 56677777777766543
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=1.6e-16 Score=163.30 Aligned_cols=176 Identities=24% Similarity=0.296 Sum_probs=136.9
Q ss_pred hccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChh-hcCCCCCCEE
Q 003193 207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTL 285 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-l~~l~~L~~L 285 (840)
...++++.+++.++.+..++....+++|++|++++|.+.. ++ .+..+++|++|++++|.++.+|.. ++++++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 4567788999999888877766678889999998888764 32 357888899999999888877544 6888899999
Q ss_pred EccCCccCC--cccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcc
Q 003193 286 SLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 286 ~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 362 (840)
++++|.+.. +..++++++|++|++++|.++.+|.. ++++++|++|++++ +.+..+++..++.+++|++|++++|.+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY-NQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC-CCcCccCHHHhcCCccCCEEECCCCcC
Confidence 999888887 34578888999999998888888765 57888899999988 567777777678888888888888876
Q ss_pred cceecCCCCCCcccccCCCCCCeEEEecCCC
Q 003193 363 QWKVEGQSNASLGELKQLSRLTTLEVHIPDA 393 (840)
Q Consensus 363 ~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 393 (840)
....+ ..+..+++|+.|++++|..
T Consensus 194 ~~~~~-------~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 194 KSVPD-------GVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp SCCCT-------TTTTTCTTCCEEECCSSCB
T ss_pred CccCH-------HHHhCCcCCCEEEccCCCc
Confidence 53221 3456677888888876643
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=9.6e-17 Score=166.22 Aligned_cols=158 Identities=21% Similarity=0.276 Sum_probs=133.3
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCccCCcccccCCCCCCEEe
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILS 308 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~ 308 (840)
.+++++++++.++.+. .+|..+ .+++++|++++|.++.+ |..+..+++|++|++++|.++.....+.+++|++|+
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred ccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence 5788999999988876 677655 36899999999999876 567999999999999999998844448999999999
Q ss_pred ecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEE
Q 003193 309 LKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEV 388 (840)
Q Consensus 309 l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l 388 (840)
+++|.++.+|..+..+++|++|++++ +.+..+|++.++.+++|++|++++|.+....+ ..+..+++|+.|++
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTLPP-------GLLTPTPKLEKLSL 155 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-------TTTTTCTTCCEEEC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCCCCCCccCh-------hhcccccCCCEEEC
Confidence 99999999999999999999999999 68888987778999999999999997753222 44667889999999
Q ss_pred ecCCCCCCCCc
Q 003193 389 HIPDAQVMPQD 399 (840)
Q Consensus 389 ~~~~~~~~~~~ 399 (840)
++|.+..++..
T Consensus 156 ~~N~l~~l~~~ 166 (290)
T 1p9a_G 156 ANNNLTELPAG 166 (290)
T ss_dssp TTSCCSCCCTT
T ss_pred CCCcCCccCHH
Confidence 99888766653
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=5e-17 Score=163.74 Aligned_cols=199 Identities=12% Similarity=0.180 Sum_probs=162.5
Q ss_pred chhhhhhccCCCcEEEeccCCcccCCcc-c-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCC-CCCCCCC-hhh
Q 003193 201 LKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTG-FRFHSLP-SSL 276 (840)
Q Consensus 201 ~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~~lp-~~l 276 (840)
+..+|. .+.+++.|++++|.+..++.. + .+++|++|++++|.....++...|.++++|++|++++ |.++.+| ..+
T Consensus 23 l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 23 IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp CSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 556666 677899999999999888763 3 7999999999999733466766679999999999998 9999876 568
Q ss_pred cCCCCCCEEEccCCccCCcccccCCCCCC---EEeecCC-CCcccChh-hcCCCCCC-EEEccCCCCCCccCcccccCCC
Q 003193 277 GCLINLRTLSLENCLVVDVAIIGDLKKLE---ILSLKHS-SIEQLPRE-IGQLTCLK-LLDLSNCSKLKEIRPNVISNLT 350 (840)
Q Consensus 277 ~~l~~L~~L~L~~~~~~~~~~i~~L~~L~---~L~l~~~-~l~~lp~~-i~~L~~L~-~L~L~~~~~l~~~p~~~l~~L~ 350 (840)
.++++|++|++++|.++..+.++.+.+|+ +|++++| .++.+|.. +..+++|+ +|++++ +.+..+|...+.. +
T Consensus 102 ~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~-~ 179 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNG-T 179 (239)
T ss_dssp ECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTT-C
T ss_pred CCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCC-C
Confidence 89999999999999998843488888888 9999999 99998864 88999999 999998 6788888875555 8
Q ss_pred CCcEEEccCCc-ccceecCCCCCCcccccCC-CCCCeEEEecCCCCCCCCcccccCcceEEE
Q 003193 351 RLEELYMGNSF-TQWKVEGQSNASLGELKQL-SRLTTLEVHIPDAQVMPQDLVFVELERFRI 410 (840)
Q Consensus 351 ~L~~L~l~~~~-~~~~~~~~~~~~l~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 410 (840)
+|++|++++|. +....+ ..+..+ ++|+.|++++|.+..++.. .+++|+.|.+
T Consensus 180 ~L~~L~L~~n~~l~~i~~-------~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDK-------DAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp EEEEEECTTCTTCCEECT-------TTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred CCCEEEcCCCCCcccCCH-------HHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 99999999994 543222 445667 8899999999998887766 6677777765
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=3.5e-16 Score=158.74 Aligned_cols=175 Identities=22% Similarity=0.336 Sum_probs=145.5
Q ss_pred CCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-hhhcCCCCCCEEEccC
Q 003193 211 APTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLEN 289 (840)
Q Consensus 211 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~ 289 (840)
..++++++++.+..+|..+. ++++.|++++|.+.. ++...|.++++|++|++++|.++.++ ..+.++++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCc-cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45678899999988887664 689999999998875 44445689999999999999998765 4588999999999999
Q ss_pred CccCC--cccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccccee
Q 003193 290 CLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (840)
Q Consensus 290 ~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 366 (840)
|.++. +..++.+++|++|++++|+++.+|.. +..+++|++|++++ +.+..+|+..++.+++|++|++++|.+....
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 99988 46778999999999999999988876 58899999999999 6888888877899999999999999775322
Q ss_pred cCCCCCCcccccCCCCCCeEEEecCCCCC
Q 003193 367 EGQSNASLGELKQLSRLTTLEVHIPDAQV 395 (840)
Q Consensus 367 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~~ 395 (840)
+ ..+..+++|+.|++++|.+..
T Consensus 172 ~-------~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 172 H-------GAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp T-------TTTTTCTTCCEEECCSCCBCT
T ss_pred H-------HHHhCCCCCCEEEeeCCceeC
Confidence 2 456778889999999887643
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=7.4e-18 Score=188.14 Aligned_cols=239 Identities=18% Similarity=0.121 Sum_probs=128.1
Q ss_pred CcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCCcccccCCCCCCEEeecC
Q 003193 232 LKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKH 311 (840)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~ 311 (840)
++|++|++++|.+.. +++..|..+++|++|++++|.++..++ ++.+++|++|++++|.++..+ ..++|++|++++
T Consensus 34 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L~~ 108 (487)
T 3oja_A 34 WNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAAN 108 (487)
T ss_dssp GGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEECCS
T ss_pred CCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEECcC
Confidence 355555555555543 333333556666666666666554433 555666666666666554411 125566666666
Q ss_pred CCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCccccc-CCCCCCeEEEec
Q 003193 312 SSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELK-QLSRLTTLEVHI 390 (840)
Q Consensus 312 ~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~-~l~~L~~L~l~~ 390 (840)
|.++.+|. ..+++|++|++++ +.+..+++..++.+++|++|++++|.+....+ ..+. .+++|+.|++++
T Consensus 109 N~l~~~~~--~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 109 NNISRVSC--SRGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-------AELAASSDTLEHLNLQY 178 (487)
T ss_dssp SCCCCEEE--CCCSSCEEEECCS-SCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG-------GGGGGGTTTCCEEECTT
T ss_pred CcCCCCCc--cccCCCCEEECCC-CCCCCCCchhhcCCCCCCEEECCCCCCCCcCh-------HHHhhhCCcccEEecCC
Confidence 66555543 2345566666665 34444444335556666666666655443222 2222 455566666665
Q ss_pred CCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeeccccccccccccccch
Q 003193 391 PDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDE 470 (840)
Q Consensus 391 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~ 470 (840)
|.+..++.... +++|+.|+++++....+|..+. .+++|+.|++++|... .+|..+
T Consensus 179 N~l~~~~~~~~--------------------l~~L~~L~Ls~N~l~~~~~~~~-~l~~L~~L~Ls~N~l~-~lp~~l--- 233 (487)
T 3oja_A 179 NFIYDVKGQVV--------------------FAKLKTLDLSSNKLAFMGPEFQ-SAAGVTWISLRNNKLV-LIEKAL--- 233 (487)
T ss_dssp SCCCEEECCCC--------------------CTTCCEEECCSSCCCEECGGGG-GGTTCSEEECTTSCCC-EECTTC---
T ss_pred Ccccccccccc--------------------CCCCCEEECCCCCCCCCCHhHc-CCCCccEEEecCCcCc-ccchhh---
Confidence 55544332222 2233334444444444444432 3578888888887644 456655
Q ss_pred hhcccccEEEeecCCCeEEEEeCCCccccccccceeeccccc
Q 003193 471 EGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLI 512 (840)
Q Consensus 471 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 512 (840)
..+++|+.|++++|+.... ........++.|+.+.+..+.
T Consensus 234 ~~l~~L~~L~l~~N~l~c~--~~~~~~~~l~~L~~l~~~~~~ 273 (487)
T 3oja_A 234 RFSQNLEHFDLRGNGFHCG--TLRDFFSKNQRVQTVAKQTVK 273 (487)
T ss_dssp CCCTTCCEEECTTCCBCHH--HHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEcCCCCCcCc--chHHHHHhCCCCcEEeccccc
Confidence 6688999999998863200 001223567778877776443
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=3.2e-16 Score=164.10 Aligned_cols=201 Identities=20% Similarity=0.243 Sum_probs=158.3
Q ss_pred CCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCCccccc
Q 003193 220 RGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIG 299 (840)
Q Consensus 220 ~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~i~ 299 (840)
+.+..+.....+++|+.|.+.++.+. .++ . +..+++|++|++++|.++.++. +..+++|++|++++|.+..++.++
T Consensus 29 ~~~~~~~~~~~l~~L~~L~l~~~~i~-~l~-~-~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~ 104 (308)
T 1h6u_A 29 SNVTDTVTQADLDGITTLSAFGTGVT-TIE-G-VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIA 104 (308)
T ss_dssp SSTTSEECHHHHHTCCEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGT
T ss_pred CCcCceecHHHcCCcCEEEeeCCCcc-Cch-h-hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhc
Confidence 33333333346889999999998876 455 3 5889999999999999999987 999999999999999999977899
Q ss_pred CCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccC
Q 003193 300 DLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQ 379 (840)
Q Consensus 300 ~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~ 379 (840)
++++|++|++++|.++.+|. +..+++|++|++++ +.+..++. ++.+++|++|++++|.+.. +..+..
T Consensus 105 ~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~---------~~~l~~ 171 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDL-NQITNISP--LAGLTNLQYLSIGNAQVSD---------LTPLAN 171 (308)
T ss_dssp TCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GGGCTTCCEEECCSSCCCC---------CGGGTT
T ss_pred CCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCC-CccCcCcc--ccCCCCccEEEccCCcCCC---------ChhhcC
Confidence 99999999999999999886 99999999999999 57888876 7899999999999997642 233788
Q ss_pred CCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeeccccc
Q 003193 380 LSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAG 459 (840)
Q Consensus 380 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 459 (840)
+++|+.|++++|.+..++....+++|+ .|+++++.....+. + ..+++|+.|++++|..
T Consensus 172 l~~L~~L~l~~n~l~~~~~l~~l~~L~--------------------~L~L~~N~l~~~~~-l-~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDISPLASLPNLI--------------------EVHLKNNQISDVSP-L-ANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCC--------------------EEECTTSCCCBCGG-G-TTCTTCCEEEEEEEEE
T ss_pred CCCCCEEECCCCccCcChhhcCCCCCC--------------------EEEccCCccCcccc-c-cCCCCCCEEEccCCee
Confidence 999999999999887766533444444 44555544444442 1 2367888888888764
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=1.8e-16 Score=159.63 Aligned_cols=165 Identities=15% Similarity=0.228 Sum_probs=128.5
Q ss_pred CcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCC-CCCCCh-hhcCCCCCCEEEccC-CccCC--c
Q 003193 221 GIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR-FHSLPS-SLGCLINLRTLSLEN-CLVVD--V 295 (840)
Q Consensus 221 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~lp~-~l~~l~~L~~L~L~~-~~~~~--~ 295 (840)
.+..+|. -.++++.|++++|.+. .++...|.++++|++|++++|. ++.+|. .+.++++|++|++++ |.++. +
T Consensus 22 ~l~~ip~--~~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 22 DIQRIPS--LPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp SCSSCCC--CCTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred CccccCC--CCCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 3667776 3448999999998876 4555566889999999999997 887765 688999999999998 88887 4
Q ss_pred ccccCCCCCCEEeecCCCCcccChhhcCCCCCC---EEEccCCCCCCccCcccccCCCCCc-EEEccCCcccceecCCCC
Q 003193 296 AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLK---LLDLSNCSKLKEIRPNVISNLTRLE-ELYMGNSFTQWKVEGQSN 371 (840)
Q Consensus 296 ~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~---~L~L~~~~~l~~~p~~~l~~L~~L~-~L~l~~~~~~~~~~~~~~ 371 (840)
..++++++|++|++++|.++.+|. +..+++|+ +|++++|..++.+|...+..+++|+ +|++++|.+. .++.
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~--- 173 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG--- 173 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECT---
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCH---
Confidence 578899999999999999999987 88888888 9999995488888887788899999 9999888765 2221
Q ss_pred CCcccccCCCCCCeEEEecCC-CCCCC
Q 003193 372 ASLGELKQLSRLTTLEVHIPD-AQVMP 397 (840)
Q Consensus 372 ~~l~~l~~l~~L~~L~l~~~~-~~~~~ 397 (840)
..+.. .+|+.|++++|. +..++
T Consensus 174 ---~~~~~-~~L~~L~L~~n~~l~~i~ 196 (239)
T 2xwt_C 174 ---YAFNG-TKLDAVYLNKNKYLTVID 196 (239)
T ss_dssp ---TTTTT-CEEEEEECTTCTTCCEEC
T ss_pred ---hhcCC-CCCCEEEcCCCCCcccCC
Confidence 12222 567778877773 55443
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=7.9e-16 Score=159.53 Aligned_cols=174 Identities=24% Similarity=0.301 Sum_probs=146.4
Q ss_pred hccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEE
Q 003193 207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~ 286 (840)
....+++.|++++|.+..++....+++|++|++++|.+.. ++. +.++++|++|++++|.++.+|. +..+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 3466799999999999888776688999999999998764 443 6889999999999999988764 89999999999
Q ss_pred ccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccccee
Q 003193 287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (840)
Q Consensus 287 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 366 (840)
+++|.+...+.++.+++|++|++++|.++.+ ..++.+++|++|++++ +.+..+++ ++.+++|++|++++|.+..
T Consensus 119 L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~-N~l~~~~~--l~~l~~L~~L~L~~N~i~~-- 192 (291)
T 1h6t_A 119 LEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHISD-- 192 (291)
T ss_dssp CTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCB--
T ss_pred CCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccC-Cccccchh--hcCCCccCEEECCCCcCCC--
Confidence 9999998877889999999999999999988 5689999999999998 57777766 7899999999999987642
Q ss_pred cCCCCCCcccccCCCCCCeEEEecCCCCCCC
Q 003193 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMP 397 (840)
Q Consensus 367 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~ 397 (840)
+..+..+++|+.|++++|.+...+
T Consensus 193 -------l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 193 -------LRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp -------CGGGTTCTTCSEEEEEEEEEECCC
T ss_pred -------ChhhccCCCCCEEECcCCcccCCc
Confidence 245788889999999988765433
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=9.5e-17 Score=179.17 Aligned_cols=231 Identities=16% Similarity=0.165 Sum_probs=172.0
Q ss_pred cCCCcEEEeccCCcccCCc-cc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEE
Q 003193 209 DEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~ 286 (840)
.++++.|++++|.+..++. .+ .+++|++|++++|.+.+..| +..+++|++|++++|.++.+|. .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 4489999999999987764 33 79999999999999875444 6899999999999999987764 38999999
Q ss_pred ccCCccCC-cccccCCCCCCEEeecCCCCccc-ChhhcCCCCCCEEEccCCCCCCccCccccc-CCCCCcEEEccCCccc
Q 003193 287 LENCLVVD-VAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVIS-NLTRLEELYMGNSFTQ 363 (840)
Q Consensus 287 L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~p~~~l~-~L~~L~~L~l~~~~~~ 363 (840)
+++|.+.. +. ..+++|++|++++|.++.+ |..++.+++|++|++++ +.+..+++..+. .+++|++|++++|.+.
T Consensus 106 L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC-CCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 99999988 33 2468999999999999977 55789999999999999 566665444354 7999999999999875
Q ss_pred ceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcc-cccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhH
Q 003193 364 WKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGM 442 (840)
Q Consensus 364 ~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~ 442 (840)
.. .....+++|+.|++++|.+..++..+ .+++|+.|+ ++++....+|.++
T Consensus 183 ~~---------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~--------------------Ls~N~l~~lp~~l 233 (487)
T 3oja_A 183 DV---------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWIS--------------------LRNNKLVLIEKAL 233 (487)
T ss_dssp EE---------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEE--------------------CTTSCCCEECTTC
T ss_pred cc---------cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEE--------------------ecCCcCcccchhh
Confidence 33 23345889999999999888776543 444555544 4444444444442
Q ss_pred HHHHhcccceeecccccc-ccccccccchhhcccccEEEee
Q 003193 443 KMLLKRTEDLHLDELAGF-KNVVHELDDEEGFARLRHLHVH 482 (840)
Q Consensus 443 ~~~l~~L~~L~L~~~~~~-~~~~~~l~~~~~l~~L~~L~l~ 482 (840)
. .+++|+.|++++|... ..++..+ ..++.|+.+.+.
T Consensus 234 ~-~l~~L~~L~l~~N~l~c~~~~~~~---~~l~~L~~l~~~ 270 (487)
T 3oja_A 234 R-FSQNLEHFDLRGNGFHCGTLRDFF---SKNQRVQTVAKQ 270 (487)
T ss_dssp C-CCTTCCEEECTTCCBCHHHHHHHH---TTCHHHHHHHHH
T ss_pred c-cCCCCCEEEcCCCCCcCcchHHHH---HhCCCCcEEecc
Confidence 2 2466777777776544 2333333 456666666664
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=1.6e-15 Score=153.87 Aligned_cols=165 Identities=22% Similarity=0.336 Sum_probs=143.1
Q ss_pred cCccchhhhhhccCCCcEEEeccCCcccCCcc-c-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-
Q 003193 197 NVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP- 273 (840)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp- 273 (840)
.+..+..+|...+..++.|++++|.+..++.. + .+++|++|++++|.+.. ++...|.++++|++|++++|.++.+|
T Consensus 22 ~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~ 100 (251)
T 3m19_A 22 QGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPL 100 (251)
T ss_dssp TTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred CCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEECCCCcccccCh
Confidence 34456666776778999999999999877653 3 79999999999999875 55556689999999999999999886
Q ss_pred hhhcCCCCCCEEEccCCccCC-c-ccccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccCCC
Q 003193 274 SSLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350 (840)
Q Consensus 274 ~~l~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~ 350 (840)
..+..+++|++|++++|.++. + ..++++++|++|++++|+++.+|. .++.+++|++|++++ +.+..+++..+.+++
T Consensus 101 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~ 179 (251)
T 3m19_A 101 GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHGAFDRLG 179 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCT
T ss_pred hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC-CcCCccCHHHHhCCC
Confidence 457899999999999999998 4 457899999999999999999987 589999999999999 688888887789999
Q ss_pred CCcEEEccCCccc
Q 003193 351 RLEELYMGNSFTQ 363 (840)
Q Consensus 351 ~L~~L~l~~~~~~ 363 (840)
+|++|++++|.+.
T Consensus 180 ~L~~L~l~~N~~~ 192 (251)
T 3m19_A 180 KLQTITLFGNQFD 192 (251)
T ss_dssp TCCEEECCSCCBC
T ss_pred CCCEEEeeCCcee
Confidence 9999999999764
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=6.8e-15 Score=151.12 Aligned_cols=171 Identities=21% Similarity=0.304 Sum_probs=145.4
Q ss_pred hccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChh-hcCCCCCCEE
Q 003193 207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTL 285 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-l~~l~~L~~L 285 (840)
...+++++|++++|.+..++....+++|++|++++|.+. .++...|.++++|++|++++|.++.+|.. ++++++|++|
T Consensus 60 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp GGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence 567899999999999988876668999999999999887 56666679999999999999999988654 7899999999
Q ss_pred EccCCccCC--cccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcc
Q 003193 286 SLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 286 ~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 362 (840)
++++|.++. +..++++++|++|++++|+++.+|.. ++.+++|++|++++ +.+..+++..++++++|++|++++|.+
T Consensus 139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC-CcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 999999988 34578999999999999999988765 58999999999999 578888887789999999999999865
Q ss_pred cceecCCCCCCcccccCCCCCCeEEEecCCC
Q 003193 363 QWKVEGQSNASLGELKQLSRLTTLEVHIPDA 393 (840)
Q Consensus 363 ~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 393 (840)
. ..+++|+.|++..+..
T Consensus 218 ~--------------~~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 218 D--------------CTCPGIRYLSEWINKH 234 (272)
T ss_dssp C--------------CCTTTTHHHHHHHHHT
T ss_pred c--------------ccCcHHHHHHHHHHhC
Confidence 3 2244566666665543
No 91
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.62 E-value=9.7e-16 Score=176.40 Aligned_cols=164 Identities=18% Similarity=0.278 Sum_probs=131.3
Q ss_pred ceEEc---cCCCHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHhCCCchhHHHHHHHhcCCCHHHHHHHHHHhhcCCCCC
Q 003193 8 EDFLD---WLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRK 84 (840)
Q Consensus 8 ~~~~l---~~L~~~~s~~Lf~~~a~~~~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~~~ 84 (840)
..|++ ++|+++||++||.+.++.. .+...+.+++|+++|+|+||||+.+|+.|+.+. .+|+.+++.+.......
T Consensus 276 ~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~ 352 (591)
T 1z6t_A 276 PKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKR 352 (591)
T ss_dssp CEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCC
T ss_pred CceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHH
Confidence 45666 4899999999999999742 234467899999999999999999999998653 37999999988665332
Q ss_pred cccc----ccc-ccceeecccccCchhhhhHHHhccCCCCCCccCHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHh
Q 003193 85 IQGM----DAD-LSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLK 159 (840)
Q Consensus 85 ~~~~----~~~-~~~l~lSY~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~wia~gfi~~~~~~~~~~~~~~~~~~~L~ 159 (840)
+... ... ..++..||+.||++ .|.||++||+||+|+.|+.+.+..+|.+++ + .+.+++++|+
T Consensus 353 ~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~--------~----~~~~~l~~L~ 419 (591)
T 1z6t_A 353 IRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET--------E----EVEDILQEFV 419 (591)
T ss_dssp SSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH--------H----HHHHHHHHHH
T ss_pred hhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCH--------H----HHHHHHHHHH
Confidence 2211 112 67899999999998 999999999999999999999999997642 1 2355899999
Q ss_pred hccccccC--CCCCceEeehhHHHHHHHHH
Q 003193 160 SASLLFDG--DSEDHAKMHRIIHAIAVSIA 187 (840)
Q Consensus 160 ~~~l~~~~--~~~~~~~mhdli~~l~~~i~ 187 (840)
++++++.. +....|+||+++|++++...
T Consensus 420 ~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 420 NKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred hCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 99999753 23347999999999998773
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.62 E-value=6.4e-16 Score=162.28 Aligned_cols=163 Identities=14% Similarity=0.102 Sum_probs=76.5
Q ss_pred CCcceeEeeccCccccCCCchhh-cCCCCCcEEEcCCCCCCCC-C----hhhcCCCCCCEEEccCCccCC--cccccCCC
Q 003193 231 FLKLKLFLFFTENLSLQIPDPFF-EGMTELRVLDLTGFRFHSL-P----SSLGCLINLRTLSLENCLVVD--VAIIGDLK 302 (840)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~-~~l~~Lr~L~l~~~~~~~l-p----~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~ 302 (840)
+++|+.|++++|.+.+..|..++ ..+++|++|++++|.++.. | ..+..+++|++|++++|.+.. +..+++++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 34455555555555544444433 4555555555555555431 1 223345555555555555544 34455555
Q ss_pred CCCEEeecCCCCcc---cCh--hhcCCCCCCEEEccCCCCCCccCcc---cccCCCCCcEEEccCCcccceecCCCCCCc
Q 003193 303 KLEILSLKHSSIEQ---LPR--EIGQLTCLKLLDLSNCSKLKEIRPN---VISNLTRLEELYMGNSFTQWKVEGQSNASL 374 (840)
Q Consensus 303 ~L~~L~l~~~~l~~---lp~--~i~~L~~L~~L~L~~~~~l~~~p~~---~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l 374 (840)
+|++|++++|++.. ++. .++++++|++|++++ +.++.++.. .++.+++|++|++++|.+....+ ..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p----~~~ 244 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN-TGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN----PSA 244 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS-SCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC----SCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC-CCCCchHHHHHHHHhcCCCCCEEECCCCCCCccch----hhH
Confidence 55555555555432 221 124555555555555 334333321 13445555555555554432111 112
Q ss_pred ccccCCCCCCeEEEecCCCCCCCC
Q 003193 375 GELKQLSRLTTLEVHIPDAQVMPQ 398 (840)
Q Consensus 375 ~~l~~l~~L~~L~l~~~~~~~~~~ 398 (840)
..+..+++|+.|++++|.+..+|.
T Consensus 245 ~~~~~~~~L~~L~Ls~N~l~~lp~ 268 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFAGLEQVPK 268 (310)
T ss_dssp SSCCCCTTCCCEECCSSCCCSCCS
T ss_pred HhccCcCcCCEEECCCCCCCchhh
Confidence 222223455555555555554443
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=2.9e-15 Score=160.08 Aligned_cols=191 Identities=15% Similarity=0.157 Sum_probs=93.9
Q ss_pred ccchhhhhhccCCCcEEEeccCCcccCCccc--CCCcceeEeeccCccccCCCchhhcCCCCCcE-EEcCCCCCCCC-Ch
Q 003193 199 ADLKEELDKIDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRV-LDLTGFRFHSL-PS 274 (840)
Q Consensus 199 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~-L~l~~~~~~~l-p~ 274 (840)
..+..+|...+.++++|++++|.+..+|... ++++|++|++++|.+...+|...|.++++++. +.+.+|+++.+ |.
T Consensus 19 ~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 19 SKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp TTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence 3444555545555666666666665555431 45566666666655544455555555555443 34444555554 33
Q ss_pred hhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCC-CCcccChh-hcCC-CCCCEEEccCCCCCCccCcccccCC
Q 003193 275 SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHS-SIEQLPRE-IGQL-TCLKLLDLSNCSKLKEIRPNVISNL 349 (840)
Q Consensus 275 ~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~-~l~~lp~~-i~~L-~~L~~L~L~~~~~l~~~p~~~l~~L 349 (840)
.+..+++|++|++++|.+.. +..+....++.+|++.++ .+..+|.. +..+ ..+++|++++ +.++.+|.. ....
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~-~f~~ 176 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNS-AFNG 176 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTT-SSTT
T ss_pred hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChh-hccc
Confidence 45555666666666655555 223334444555555443 45555432 2333 2455555555 455555554 2344
Q ss_pred CCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCC
Q 003193 350 TRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMP 397 (840)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~ 397 (840)
.+|++|++.++.....++ ...+.++++|+.|++++|.+..+|
T Consensus 177 ~~L~~l~l~~~n~l~~i~------~~~f~~l~~L~~LdLs~N~l~~lp 218 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELP------NDVFHGASGPVILDISRTRIHSLP 218 (350)
T ss_dssp EEEEEEECTTCTTCCCCC------TTTTTTEECCSEEECTTSCCCCCC
T ss_pred cchhHHhhccCCcccCCC------HHHhccCcccchhhcCCCCcCccC
Confidence 455555554322111111 012344455555555555544444
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=6.7e-15 Score=152.51 Aligned_cols=181 Identities=21% Similarity=0.282 Sum_probs=148.5
Q ss_pred eccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCCcc
Q 003193 217 IPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVA 296 (840)
Q Consensus 217 l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~ 296 (840)
+..+.+..+.....+++|+.|++.+|.+. .++. +..+++|++|++++|.++.++. +.++++|++|++++|.+..++
T Consensus 31 l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 106 (291)
T 1h6t_A 31 LKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS 106 (291)
T ss_dssp TTCSCTTSEECHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG
T ss_pred hcCCCcccccchhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh
Confidence 33444444433446889999999998875 3443 5889999999999999999887 999999999999999999977
Q ss_pred cccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCccc
Q 003193 297 IIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGE 376 (840)
Q Consensus 297 ~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~ 376 (840)
.++++++|++|++++|.++.++ .+..+++|++|++++ +.+..++ . ++.+++|++|++++|.+.. +..
T Consensus 107 ~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~-n~l~~~~-~-l~~l~~L~~L~L~~N~l~~---------~~~ 173 (291)
T 1h6t_A 107 SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDIT-V-LSRLTKLDTLSLEDNQISD---------IVP 173 (291)
T ss_dssp GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCS-SCCCCCG-G-GGGCTTCSEEECCSSCCCC---------CGG
T ss_pred hhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccC-CcCCcch-h-hccCCCCCEEEccCCcccc---------chh
Confidence 7999999999999999999985 689999999999999 5777774 3 8999999999999997642 223
Q ss_pred ccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcC
Q 003193 377 LKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGD 414 (840)
Q Consensus 377 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 414 (840)
+..+++|+.|++++|.+..++....+++|+.|++..+.
T Consensus 174 l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEE
T ss_pred hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCc
Confidence 78899999999999998877654466777777766543
No 95
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.61 E-value=9.3e-15 Score=145.63 Aligned_cols=149 Identities=21% Similarity=0.315 Sum_probs=126.0
Q ss_pred CcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-hhcCCCCCCEEEccCC
Q 003193 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENC 290 (840)
Q Consensus 212 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~ 290 (840)
.+.++.+++.+..+|..+. ++|+.|++++|.+....| ..|.++++|++|++++|.++.+|. .+..+++|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEP-GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCH-HHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4568888888888887654 889999999998875444 455889999999999999998875 4688999999999999
Q ss_pred ccCC-c-ccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccc
Q 003193 291 LVVD-V-AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (840)
Q Consensus 291 ~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 363 (840)
.++. + ..++.+++|++|++++|+++.+|..+..+++|++|++++ +.+..+|...+..+++|++|++.+|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 9888 3 457899999999999999999999999999999999998 6888888777888999999999888654
No 96
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=6.3e-15 Score=145.76 Aligned_cols=149 Identities=13% Similarity=0.246 Sum_probs=110.2
Q ss_pred cEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-hhcCCCCCCEEEccCCc
Q 003193 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCL 291 (840)
Q Consensus 213 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~ 291 (840)
+.++++++.+..+|..+ ...++.|++++|.+....+..+|.++++|++|++++|.++.++. .|.++++|++|++++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 47788888887777644 34567788888877655555666778888888888888876654 67888888888888888
Q ss_pred cCC--cccccCCCCCCEEeecCCCCccc-ChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccc
Q 003193 292 VVD--VAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (840)
Q Consensus 292 ~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 363 (840)
++. +..++++++|++|++++|+++.+ |..+..+++|++|++++ +.+..+++..+..+++|++|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 777 34577888888888888888766 55677788888888887 5677775555777888888887777543
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=6.2e-15 Score=157.48 Aligned_cols=120 Identities=15% Similarity=0.202 Sum_probs=64.6
Q ss_pred eeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-hhcCCCCCCEEEccCCccCC---cccccCCCCCCE-Eee
Q 003193 235 KLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVD---VAIIGDLKKLEI-LSL 309 (840)
Q Consensus 235 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~-L~l 309 (840)
++++.++++++ .+|.++ .+++++|++++|.++.+|+ .|.++++|++|+|++|.+.. +..+.++++|++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 34455555443 455544 2456666666666666654 35666666666666666544 234555655554 334
Q ss_pred cCCCCcccC-hhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccC
Q 003193 310 KHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359 (840)
Q Consensus 310 ~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~ 359 (840)
.+|+++.+| ..+..+++|++|++++ +.+..+|...+....++..|++.+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQD 137 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEEES
T ss_pred cCCcccccCchhhhhccccccccccc-cccccCCchhhcccchhhhhhhcc
Confidence 445666553 3345666666666665 455555544334444455555443
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=6.6e-15 Score=167.38 Aligned_cols=174 Identities=24% Similarity=0.302 Sum_probs=148.8
Q ss_pred hccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEE
Q 003193 207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~ 286 (840)
..+..++.|+++++.+..++....+++|+.|++++|.+.. ++. +..+++|++|+|++|.+..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 4567889999999999888876689999999999998774 443 688999999999999999877 689999999999
Q ss_pred ccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccccee
Q 003193 287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (840)
Q Consensus 287 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 366 (840)
|++|.+..++.++.+++|+.|+|++|.++.+ ..+..+++|++|+|++ +.+..+++ +..+++|++|++++|.+..
T Consensus 116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~-N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-- 189 (605)
T 1m9s_A 116 LEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHISD-- 189 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCB--
T ss_pred ecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcC-CcCCCchh--hccCCCCCEEECcCCCCCC--
Confidence 9999999877899999999999999999988 5789999999999999 56777766 7899999999999997642
Q ss_pred cCCCCCCcccccCCCCCCeEEEecCCCCCCC
Q 003193 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMP 397 (840)
Q Consensus 367 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~ 397 (840)
+..+..+++|+.|++++|.+...|
T Consensus 190 -------l~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 190 -------LRALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp -------CGGGTTCTTCSEEECCSEEEECCC
T ss_pred -------ChHHccCCCCCEEEccCCcCcCCc
Confidence 356788899999999988765544
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=3.1e-16 Score=167.04 Aligned_cols=121 Identities=18% Similarity=0.194 Sum_probs=54.6
Q ss_pred CCcEEEeccCCcccCCccc-CC--CcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCC--CChhhcCCCCCCEE
Q 003193 211 APTAISIPFRGIYELPERL-GF--LKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHS--LPSSLGCLINLRTL 285 (840)
Q Consensus 211 ~l~~L~l~~~~~~~l~~~~-~~--~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~--lp~~l~~l~~L~~L 285 (840)
..++++++++.+. +..+ .+ ++++.|.+.+|.+....+. + .++++|++|++++|.++. +|..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAE-H-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCS-C-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchh-h-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3566777665442 1111 12 4445555554444433222 1 234455555555554431 44444445555555
Q ss_pred EccCCccCC--cccccCCCCCCEEeecCC-CCc--ccChhhcCCCCCCEEEccCC
Q 003193 286 SLENCLVVD--VAIIGDLKKLEILSLKHS-SIE--QLPREIGQLTCLKLLDLSNC 335 (840)
Q Consensus 286 ~L~~~~~~~--~~~i~~L~~L~~L~l~~~-~l~--~lp~~i~~L~~L~~L~L~~~ 335 (840)
++++|.+.. +..++++++|++|++++| .++ .+|..+.++++|++|++++|
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 555544443 344444444444444444 344 23444444444444444443
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.59 E-value=1e-14 Score=143.26 Aligned_cols=165 Identities=24% Similarity=0.343 Sum_probs=130.7
Q ss_pred cEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChh-hcCCCCCCEEEccCCc
Q 003193 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLENCL 291 (840)
Q Consensus 213 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-l~~l~~L~~L~L~~~~ 291 (840)
+.+..+++.+..+|... .++++.|++++|.+. .++...|.++++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45667777777777544 458889999888876 56666678899999999999999888654 6889999999999999
Q ss_pred cCC-c-ccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecC
Q 003193 292 VVD-V-AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG 368 (840)
Q Consensus 292 ~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 368 (840)
++. + ..++++++|++|++++|.++.+|.. +.++++|++|++++ +.+..++...+.++++|++|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCee-----
Confidence 888 3 4578999999999999999988765 68899999999998 5788888777888999999999988543
Q ss_pred CCCCCcccccCCCCCCeEEEecCCCC
Q 003193 369 QSNASLGELKQLSRLTTLEVHIPDAQ 394 (840)
Q Consensus 369 ~~~~~l~~l~~l~~L~~L~l~~~~~~ 394 (840)
..+++|+.|+++.+...
T Consensus 162 ---------~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 162 ---------CTCPGIRYLSEWINKHS 178 (208)
T ss_dssp ---------CCTTTTHHHHHHHHHCT
T ss_pred ---------cCCCCHHHHHHHHHhCC
Confidence 23456777777766544
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.58 E-value=1.2e-14 Score=143.63 Aligned_cols=147 Identities=22% Similarity=0.332 Sum_probs=101.4
Q ss_pred cEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCc
Q 003193 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL 291 (840)
Q Consensus 213 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~ 291 (840)
+.++.+++.+..+|..+. ++++.|++++|.+. .++...|..+++|++|++++|.++.+ |..|.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456677777777776543 56777777777665 34444457777777777777777755 6677777777777777777
Q ss_pred cCC-c-ccccCCCCCCEEeecCCCCccc-ChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcc
Q 003193 292 VVD-V-AIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 292 ~~~-~-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 362 (840)
++. + ..+.++++|++|++++|.++.+ |..+..+++|++|++++ +.+..+++..+..+++|++|++++|.+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 776 3 3356777777777777777766 34567777777777777 566666666567777777777777654
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=7e-15 Score=154.31 Aligned_cols=191 Identities=15% Similarity=0.128 Sum_probs=148.5
Q ss_pred cCCCcEEEeccCCccc-CCcc---cCCCcceeEeeccCccccCCC---chhhcCCCCCcEEEcCCCCCCCCC-hhhcCCC
Q 003193 209 DEAPTAISIPFRGIYE-LPER---LGFLKLKLFLFFTENLSLQIP---DPFFEGMTELRVLDLTGFRFHSLP-SSLGCLI 280 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~~-l~~~---~~~~~L~~L~l~~~~~~~~~~---~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~ 280 (840)
..++++|++++|.+.. .|.. ..+++|++|++++|.+....+ ...+..+++|++|++++|.+..+| ..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4569999999999854 4444 468999999999999876544 122357999999999999998765 6789999
Q ss_pred CCCEEEccCCccCC------cccccCCCCCCEEeecCCCCcccChh----hcCCCCCCEEEccCCCCCCcc-CcccccCC
Q 003193 281 NLRTLSLENCLVVD------VAIIGDLKKLEILSLKHSSIEQLPRE----IGQLTCLKLLDLSNCSKLKEI-RPNVISNL 349 (840)
Q Consensus 281 ~L~~L~L~~~~~~~------~~~i~~L~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~L~~~~~l~~~-p~~~l~~L 349 (840)
+|++|++++|.+.. ...++++++|++|++++|+++.+|.. ++.+++|++|++++ +.+... |.. ++.+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~p~~-~~~~ 247 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH-NSLRATVNPS-APRC 247 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT-SCCCCCCCSC-CSSC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC-CCCCccchhh-HHhc
Confidence 99999999998654 23357899999999999999877763 57889999999999 566666 654 5666
Q ss_pred ---CCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEE
Q 003193 350 ---TRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRIC 411 (840)
Q Consensus 350 ---~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 411 (840)
++|++|++++|.+. .++ ..+. ++|+.|++++|.+..+|....+++|+.|++.
T Consensus 248 ~~~~~L~~L~Ls~N~l~-~lp-------~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~ 302 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLE-QVP-------KGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLD 302 (310)
T ss_dssp CCCTTCCCEECCSSCCC-SCC-------SCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECS
T ss_pred cCcCcCCEEECCCCCCC-chh-------hhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECc
Confidence 69999999999876 222 2222 6899999999998876654455566665554
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=1.5e-14 Score=140.51 Aligned_cols=147 Identities=19% Similarity=0.210 Sum_probs=72.8
Q ss_pred ccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCC-CChhhcCCCCCCEEE
Q 003193 208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHS-LPSSLGCLINLRTLS 286 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~l~~l~~L~~L~ 286 (840)
..+++++|++++|.+..++....+++|++|++++|.+. .+. .+..+++|++|++++|.++. .|..++.+++|++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~--~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT--NYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS--CCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC--cch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 34556666666666655553334555555555555322 111 23445555555555555543 344455555555555
Q ss_pred ccCCccCC--cccccCCCCCCEEeecCCC-CcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCc
Q 003193 287 LENCLVVD--VAIIGDLKKLEILSLKHSS-IEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF 361 (840)
Q Consensus 287 L~~~~~~~--~~~i~~L~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 361 (840)
+++|.+.. +..++++++|++|++++|. ++.+| .+..+++|++|++++ +.+..++. +..+++|++|++++|.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~-n~i~~~~~--l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF-DGVHDYRG--IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTT-BCCCCCTT--GGGCSSCCEEEECBC-
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCC-CCCcChHH--hccCCCCCEEEeeCcc
Confidence 55555544 4445555555555555554 44444 345555555555554 33444431 4445555555554443
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=4e-15 Score=151.58 Aligned_cols=170 Identities=19% Similarity=0.202 Sum_probs=120.6
Q ss_pred cCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEcc
Q 003193 209 DEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLE 288 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~ 288 (840)
..++..+.+..+.+..++....+++|+.|++.+|.+. .++ . +..+++|++|++++|.++.+|. +.++++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 3344455566666666664446777788888777655 444 2 4677888888888888887776 7888888888888
Q ss_pred CCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecC
Q 003193 289 NCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG 368 (840)
Q Consensus 289 ~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 368 (840)
+|.++..+.+.. .+|++|++++|.++.+| .+.++++|++|++++ +.++.++. ++.+++|++|++++|.+..
T Consensus 94 ~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~L~~L~L~~N~i~~---- 164 (263)
T 1xeu_A 94 RNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIVM--LGFLSKLEVLDLHGNEITN---- 164 (263)
T ss_dssp SSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCGG--GGGCTTCCEEECTTSCCCB----
T ss_pred CCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCC-CcCCCChH--HccCCCCCEEECCCCcCcc----
Confidence 888777333444 78888888888888775 477888888888887 56777753 7788888888888876542
Q ss_pred CCCCCcccccCCCCCCeEEEecCCCCCC
Q 003193 369 QSNASLGELKQLSRLTTLEVHIPDAQVM 396 (840)
Q Consensus 369 ~~~~~l~~l~~l~~L~~L~l~~~~~~~~ 396 (840)
+..+..+++|+.|++++|.+...
T Consensus 165 -----~~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 -----TGGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -----CTTSTTCCCCCEEEEEEEEEECC
T ss_pred -----hHHhccCCCCCEEeCCCCcccCC
Confidence 14566777788888887765544
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=1.4e-14 Score=140.80 Aligned_cols=151 Identities=17% Similarity=0.247 Sum_probs=129.5
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC--cccccCCCCCCEE
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEIL 307 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L 307 (840)
.+++|+.|++++|.+. .+| . +..+++|++|++++|.++.++ .+..+++|++|++++|.+.. +..++++++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 5789999999999887 566 3 588999999999999877665 78999999999999999987 8899999999999
Q ss_pred eecCCCCcc-cChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeE
Q 003193 308 SLKHSSIEQ-LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTL 386 (840)
Q Consensus 308 ~l~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L 386 (840)
++++|.++. .|..++++++|++|++++|..++.+|. ++.+++|++|++++|.+.. +..+..+++|+.|
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~---------~~~l~~l~~L~~L 186 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD---------YRGIEDFPKLNQL 186 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC---------CTTGGGCSSCCEE
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC---------hHHhccCCCCCEE
Confidence 999999985 678899999999999999665888873 8999999999999997642 2367788999999
Q ss_pred EEecCCCCC
Q 003193 387 EVHIPDAQV 395 (840)
Q Consensus 387 ~l~~~~~~~ 395 (840)
++++|.+..
T Consensus 187 ~l~~N~i~~ 195 (197)
T 4ezg_A 187 YAFSQTIGG 195 (197)
T ss_dssp EECBC----
T ss_pred EeeCcccCC
Confidence 999987653
No 106
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=2.7e-15 Score=159.82 Aligned_cols=175 Identities=17% Similarity=0.247 Sum_probs=140.6
Q ss_pred CCCcEEEeccCCcccCC-cccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCC-CCChhhcCCCCCCEEEc
Q 003193 210 EAPTAISIPFRGIYELP-ERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCLINLRTLSL 287 (840)
Q Consensus 210 ~~l~~L~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~l~~l~~L~~L~L 287 (840)
..++.+++.+|.+...+ ....+++|++|++++|.+........+..+++|++|++++|.++ ..|..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 67889999998885544 34478999999999998764422345689999999999999987 56788999999999999
Q ss_pred cCC-ccCC---cccccCCCCCCEEeecCC-CCcc--cChhhcCCC-CCCEEEccCCC-CC--CccCcccccCCCCCcEEE
Q 003193 288 ENC-LVVD---VAIIGDLKKLEILSLKHS-SIEQ--LPREIGQLT-CLKLLDLSNCS-KL--KEIRPNVISNLTRLEELY 356 (840)
Q Consensus 288 ~~~-~~~~---~~~i~~L~~L~~L~l~~~-~l~~--lp~~i~~L~-~L~~L~L~~~~-~l--~~~p~~~l~~L~~L~~L~ 356 (840)
++| .++. +..++++++|++|++++| .++. +|..+..++ +|++|++++|. .+ ..+|.. ++++++|++|+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L~ 228 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHLD 228 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEEE
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCCCEEe
Confidence 999 5764 456888999999999999 8884 788889999 99999999974 34 334443 67899999999
Q ss_pred ccCCc-ccceecCCCCCCcccccCCCCCCeEEEecCC
Q 003193 357 MGNSF-TQWKVEGQSNASLGELKQLSRLTTLEVHIPD 392 (840)
Q Consensus 357 l~~~~-~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 392 (840)
+++|. +.. ..+..+.++++|+.|++++|.
T Consensus 229 l~~~~~l~~-------~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 229 LSDSVMLKN-------DCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CTTCTTCCG-------GGGGGGGGCTTCCEEECTTCT
T ss_pred CCCCCcCCH-------HHHHHHhCCCCCCEeeCCCCC
Confidence 99986 322 234567788999999998875
No 107
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=8.3e-16 Score=167.00 Aligned_cols=183 Identities=16% Similarity=0.110 Sum_probs=122.3
Q ss_pred ccCCCcEEEeccCCcccC-----Cccc-CCCcceeEeeccCc---cccCCCchh------hcCCCCCcEEEcCCCCCCC-
Q 003193 208 IDEAPTAISIPFRGIYEL-----PERL-GFLKLKLFLFFTEN---LSLQIPDPF------FEGMTELRVLDLTGFRFHS- 271 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l-----~~~~-~~~~L~~L~l~~~~---~~~~~~~~~------~~~l~~Lr~L~l~~~~~~~- 271 (840)
..+++++|++++|.+... +..+ .+++|++|++++|. +.+.+|..+ +..+++|++|++++|.++.
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 456788888888877432 2222 57888888887753 333445443 3678888888888888875
Q ss_pred ----CChhhcCCCCCCEEEccCCccCC--ccc----ccCC---------CCCCEEeecCCCCc--ccC---hhhcCCCCC
Q 003193 272 ----LPSSLGCLINLRTLSLENCLVVD--VAI----IGDL---------KKLEILSLKHSSIE--QLP---REIGQLTCL 327 (840)
Q Consensus 272 ----lp~~l~~l~~L~~L~L~~~~~~~--~~~----i~~L---------~~L~~L~l~~~~l~--~lp---~~i~~L~~L 327 (840)
+|..+..+++|++|+|++|.+.. +.. +..+ ++|++|++++|+++ .+| ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 67778888888888888888764 222 3333 78888888888876 444 466778888
Q ss_pred CEEEccCCCCCCc-----cCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCC
Q 003193 328 KLLDLSNCSKLKE-----IRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (840)
Q Consensus 328 ~~L~L~~~~~l~~-----~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 394 (840)
++|++++| .+.. +.+..+.++++|++|++++|.+..... ......+..+++|+.|++++|.+.
T Consensus 190 ~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~---~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 190 HTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS---SALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp CEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH---HHHHHHGGGCTTCCEEECTTCCCC
T ss_pred CEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH---HHHHHHHccCCCcCEEECCCCCCc
Confidence 88888884 4541 222126778888888888886531000 011245667778888888877654
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=8.9e-15 Score=166.31 Aligned_cols=185 Identities=20% Similarity=0.266 Sum_probs=151.5
Q ss_pred cEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCcc
Q 003193 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLV 292 (840)
Q Consensus 213 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 292 (840)
..+.+..+.+..+.....+++|+.|.+.+|.+. .++. +..+++|++|+|++|.+..+|. +..+++|++|+|++|.+
T Consensus 24 ~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 24 IKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred HHHhccCCCcccccchhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC
Confidence 334445555555544457889999999998875 4443 5889999999999999999886 99999999999999999
Q ss_pred CCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCC
Q 003193 293 VDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNA 372 (840)
Q Consensus 293 ~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~ 372 (840)
..++.++.+++|++|+|++|.++.+| .+..+++|+.|+|++ +.+..++ . ++.+++|+.|++++|.+..
T Consensus 100 ~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~-N~l~~l~-~-l~~l~~L~~L~Ls~N~l~~-------- 167 (605)
T 1m9s_A 100 KDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDIT-V-LSRLTKLDTLSLEDNQISD-------- 167 (605)
T ss_dssp CCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCS-SCCCCCG-G-GGSCTTCSEEECCSSCCCC--------
T ss_pred CCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCC-CccCCch-h-hcccCCCCEEECcCCcCCC--------
Confidence 99778999999999999999999986 589999999999999 5777774 3 8999999999999997642
Q ss_pred CcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcC
Q 003193 373 SLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGD 414 (840)
Q Consensus 373 ~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 414 (840)
+..+..+++|+.|++++|.+..++....+++|+.|++..+.
T Consensus 168 -~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 168 -IVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp -CGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEE
T ss_pred -chhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCc
Confidence 12278899999999999998877654467777777765443
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.53 E-value=3.7e-14 Score=139.28 Aligned_cols=161 Identities=19% Similarity=0.254 Sum_probs=135.0
Q ss_pred CccchhhhhhccCCCcEEEeccCCcccCCccc--CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChh
Q 003193 198 VADLKEELDKIDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS 275 (840)
Q Consensus 198 ~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~ 275 (840)
+..+..+|.....++++|++++|.+..++... .+++|++|++.+|.+. .++...|..+++|++|++++|.++.+|..
T Consensus 16 ~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 94 (208)
T 2o6s_A 16 SQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNG 94 (208)
T ss_dssp SSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHh
Confidence 34455556667789999999999998887643 7999999999999887 66777779999999999999999988765
Q ss_pred -hcCCCCCCEEEccCCccCC-c-ccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCC
Q 003193 276 -LGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351 (840)
Q Consensus 276 -l~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~ 351 (840)
+.++++|++|++++|.+.. + ..++++++|++|++++|.++.+|.. +.++++|++|++++|. + .+.+++
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-~-------~~~~~~ 166 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP-W-------DCTCPG 166 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC-B-------CCCTTT
T ss_pred HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC-e-------ecCCCC
Confidence 7899999999999999988 4 4589999999999999999998876 7899999999999952 2 356778
Q ss_pred CcEEEccCCcccceec
Q 003193 352 LEELYMGNSFTQWKVE 367 (840)
Q Consensus 352 L~~L~l~~~~~~~~~~ 367 (840)
|+.|++..|.+.+.++
T Consensus 167 l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 167 IRYLSEWINKHSGVVR 182 (208)
T ss_dssp THHHHHHHHHCTTTBB
T ss_pred HHHHHHHHHhCCceee
Confidence 8999888877664444
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.52 E-value=2.2e-14 Score=153.78 Aligned_cols=172 Identities=21% Similarity=0.233 Sum_probs=127.0
Q ss_pred cEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhc-CCCCCcEEEcCCCCCCCCC-hhhcCCCCCCEEEccCC
Q 003193 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFE-GMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENC 290 (840)
Q Consensus 213 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~ 290 (840)
+.++.+++.+..+|..+ .+.++.|++++|.+.. ++...|. ++++|++|++++|.++.++ ..|.++++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~-l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCE-ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCc-cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 56778888887777654 3457888888887764 4444455 7888888888888888765 46888888888888888
Q ss_pred ccCC--cccccCCCCCCEEeecCCCCccc-ChhhcCCCCCCEEEccCCCCCCccCcccc---cCCCCCcEEEccCCcccc
Q 003193 291 LVVD--VAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVI---SNLTRLEELYMGNSFTQW 364 (840)
Q Consensus 291 ~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~p~~~l---~~L~~L~~L~l~~~~~~~ 364 (840)
.+.. +..+.++.+|++|++++|.++.+ |..+..+++|++|++++ +.+..+|...+ ..+++|++|++++|.+..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 8877 35678888888888888888877 56688888888888888 67888887755 568888888888887652
Q ss_pred eecCCCCCCcccccCCCC--CCeEEEecCCCC
Q 003193 365 KVEGQSNASLGELKQLSR--LTTLEVHIPDAQ 394 (840)
Q Consensus 365 ~~~~~~~~~l~~l~~l~~--L~~L~l~~~~~~ 394 (840)
.. ...+..++. |+.|++.+|...
T Consensus 178 l~-------~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LP-------LTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CC-------HHHHHHSCHHHHTTEECCSSCEE
T ss_pred cC-------HHHhhhccHhhcceEEecCCCcc
Confidence 11 234455554 467888877654
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=8.7e-14 Score=137.55 Aligned_cols=147 Identities=20% Similarity=0.297 Sum_probs=118.7
Q ss_pred eeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-hhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecC
Q 003193 235 KLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKH 311 (840)
Q Consensus 235 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~ 311 (840)
+.+++.++.+. .+|..+ .++|++|++++|.++.+|. .+..+++|++|++++|.+.. +..+.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 45677766654 567654 2689999999999987765 78889999999999999887 67899999999999999
Q ss_pred CCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEec
Q 003193 312 SSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHI 390 (840)
Q Consensus 312 ~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~ 390 (840)
|.++.+|.. +..+++|++|++++ +.+..+++..+..+++|++|++++|.+....+ ..+..+++|+.|++++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK-------GTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-------TTTTTCTTCCEEECCS
T ss_pred CcCCccCHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCCcCCEECH-------HHHhCCCCCCEEEeCC
Confidence 999999876 57899999999998 67888877778899999999999987653222 3466778888898887
Q ss_pred CCC
Q 003193 391 PDA 393 (840)
Q Consensus 391 ~~~ 393 (840)
|..
T Consensus 162 N~~ 164 (220)
T 2v9t_B 162 NPF 164 (220)
T ss_dssp SCE
T ss_pred CCc
Confidence 764
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.51 E-value=1.8e-13 Score=153.65 Aligned_cols=176 Identities=16% Similarity=0.240 Sum_probs=133.0
Q ss_pred CCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccC
Q 003193 210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN 289 (840)
Q Consensus 210 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~ 289 (840)
.+++.|++++|.+..+|..+ .++|++|++++|.+. .+| ..+++|++|++++|.++.+|. +.+ +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 47889999999998888765 478999999999877 677 347899999999999998888 665 899999999
Q ss_pred CccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCC
Q 003193 290 CLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQ 369 (840)
Q Consensus 290 ~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~ 369 (840)
|.++..+. .+++|++|++++|.++.+|. .+++|++|++++ +.++.+|. ++ ++|++|++++|.+. .++.
T Consensus 130 N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~L~~lp~--l~--~~L~~L~Ls~N~L~-~lp~- 197 (571)
T 3cvr_A 130 NQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRN-NQLTFLPE--LP--ESLEALDVSTNLLE-SLPA- 197 (571)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCCC--CC--TTCCEEECCSSCCS-SCCC-
T ss_pred CcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCC-CCCCCcch--hh--CCCCEEECcCCCCC-chhh-
Confidence 99888333 68899999999999999887 678999999998 57888887 55 89999999998765 2221
Q ss_pred CCCCcc-cc-cCCCCCCeEEEecCCCCCCCCcc-cccCcceEEE
Q 003193 370 SNASLG-EL-KQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRI 410 (840)
Q Consensus 370 ~~~~l~-~l-~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l 410 (840)
+. .+ .....|+.|++++|.+..+|..+ .+++|+.|++
T Consensus 198 ----~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 198 ----VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIIL 237 (571)
T ss_dssp ----CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEEC
T ss_pred ----HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEe
Confidence 11 11 11123388999999888777643 3444444433
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.51 E-value=1e-13 Score=141.15 Aligned_cols=148 Identities=21% Similarity=0.244 Sum_probs=130.7
Q ss_pred hccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEE
Q 003193 207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~ 286 (840)
....+++.|++++|.+..++....+++|+.|++++|.+.. ++. +.++++|++|++++|.++.+|.... .+|++|+
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~-~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISD-LSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred hhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCC-Chh--hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence 4567899999999999999865689999999999998774 444 6899999999999999999876443 9999999
Q ss_pred ccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccc
Q 003193 287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (840)
Q Consensus 287 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 363 (840)
+++|.++.++.++++++|++|++++|+++.+| .++.+++|++|++++ +.+..++ .+..+++|+.|++++|.+.
T Consensus 113 L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~-N~i~~~~--~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 113 LDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHG-NEITNTG--GLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTT-SCCCBCT--TSTTCCCCCEEEEEEEEEE
T ss_pred ccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCC-CcCcchH--HhccCCCCCEEeCCCCccc
Confidence 99999999778999999999999999999997 699999999999999 6777773 3899999999999998654
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=6.3e-14 Score=150.26 Aligned_cols=154 Identities=18% Similarity=0.274 Sum_probs=83.4
Q ss_pred eeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChh-hc-CCCCCCEEEccCCccCC--cccccCCCCCCEEeec
Q 003193 235 KLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LG-CLINLRTLSLENCLVVD--VAIIGDLKKLEILSLK 310 (840)
Q Consensus 235 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-l~-~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~ 310 (840)
+++++.++.+. .+|..+ ...+++|++++|.++.++.. +. ++++|++|+|++|.+.. +..++++++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 34555555443 345433 23456666666666655433 33 56666666666666655 3456666666666666
Q ss_pred CCCCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEe
Q 003193 311 HSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389 (840)
Q Consensus 311 ~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~ 389 (840)
+|+++.+|. .+..+++|++|++++ +.+..+++..+..+++|++|++++|.+..... ..+..+..+++|+.|+++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV----ELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCSCCG----GGTC----CTTCCEEECC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCC-CcccEECHHHhCCcccCCEEECCCCcCCeeCH----HHhcCcccCCcCCEEECC
Confidence 666665554 355666666666666 45555554446666666666666665432111 111112445666666666
Q ss_pred cCCCCCCC
Q 003193 390 IPDAQVMP 397 (840)
Q Consensus 390 ~~~~~~~~ 397 (840)
+|.+..++
T Consensus 172 ~N~l~~l~ 179 (361)
T 2xot_A 172 SNKLKKLP 179 (361)
T ss_dssp SSCCCCCC
T ss_pred CCCCCccC
Confidence 66665554
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.50 E-value=1.5e-13 Score=135.93 Aligned_cols=148 Identities=18% Similarity=0.217 Sum_probs=121.6
Q ss_pred eeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC--hhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeec
Q 003193 235 KLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP--SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLK 310 (840)
Q Consensus 235 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp--~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~ 310 (840)
+++++++|.+. .+|..+ ...+++|++++|.++.++ ..+.++++|++|++++|.++. +..++++++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 47888888765 577654 346789999999999773 348899999999999999988 4579999999999999
Q ss_pred CCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEe
Q 003193 311 HSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389 (840)
Q Consensus 311 ~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~ 389 (840)
+|.++.+|.. +..+++|++|++++ +.+..+++..+..+++|++|++++|.+....+ ..+..+++|+.|+++
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-------GAFDTLHSLSTLNLL 161 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT-------TTTTTCTTCCEEECC
T ss_pred CCccCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCCcCCEECH-------HHhcCCCCCCEEEec
Confidence 9999988765 88999999999999 67888866668999999999999997764322 566778899999998
Q ss_pred cCCCC
Q 003193 390 IPDAQ 394 (840)
Q Consensus 390 ~~~~~ 394 (840)
+|.+.
T Consensus 162 ~N~l~ 166 (220)
T 2v70_A 162 ANPFN 166 (220)
T ss_dssp SCCEE
T ss_pred CcCCc
Confidence 87643
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.49 E-value=2.6e-13 Score=135.07 Aligned_cols=148 Identities=24% Similarity=0.283 Sum_probs=122.1
Q ss_pred ceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCccCC-c-ccccCCCCCCEEeec
Q 003193 234 LKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLK 310 (840)
Q Consensus 234 L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~ 310 (840)
.+.+++.++.+. .+|..+ .++|++|++++|.++.+ |..+.++++|++|++++|.+.. + ..++++++|++|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 455777666654 677654 37899999999999977 6778999999999999999988 4 557899999999999
Q ss_pred CCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEe
Q 003193 311 HSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389 (840)
Q Consensus 311 ~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~ 389 (840)
+|+++.+|.. +..+++|++|++++ +.+..+|.. +.++++|++|++++|.+..... ..+..+++|+.|+++
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCC-NKLTELPRG-IERLTHLTHLALDQNQLKSIPH-------GAFDRLSSLTHAYLF 167 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTT-GGGCTTCSEEECCSSCCCCCCT-------TTTTTCTTCCEEECT
T ss_pred CCcCCccChhHhCcchhhCeEeccC-CcccccCcc-cccCCCCCEEECCCCcCCccCH-------HHHhCCCCCCEEEee
Confidence 9999998865 58899999999999 678899877 7999999999999997753221 456778899999998
Q ss_pred cCCCC
Q 003193 390 IPDAQ 394 (840)
Q Consensus 390 ~~~~~ 394 (840)
+|...
T Consensus 168 ~N~~~ 172 (229)
T 3e6j_A 168 GNPWD 172 (229)
T ss_dssp TSCBC
T ss_pred CCCcc
Confidence 87654
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=2e-14 Score=154.46 Aligned_cols=154 Identities=12% Similarity=0.223 Sum_probs=82.7
Q ss_pred ccCCCcEEEeccCCcccCCc-----cc-CCC-cceeEeeccCccccCCCchhhcCC-----CCCcEEEcCCCCCCCCC-h
Q 003193 208 IDEAPTAISIPFRGIYELPE-----RL-GFL-KLKLFLFFTENLSLQIPDPFFEGM-----TELRVLDLTGFRFHSLP-S 274 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~-----~~-~~~-~L~~L~l~~~~~~~~~~~~~~~~l-----~~Lr~L~l~~~~~~~lp-~ 274 (840)
...++++|++++|.+...+. .+ .++ +|++|++++|.+....+..+ ..+ ++|++|++++|.++..+ .
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL-VQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH-HHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH-HHHHhccCCCccEEECcCCcCChHHHH
Confidence 34456677777766655542 11 455 66666666666554433332 222 66666666666665432 2
Q ss_pred h----hcCC-CCCCEEEccCCccCC--ccc----ccC-CCCCCEEeecCCCCc-----ccChhhcCCC-CCCEEEccCCC
Q 003193 275 S----LGCL-INLRTLSLENCLVVD--VAI----IGD-LKKLEILSLKHSSIE-----QLPREIGQLT-CLKLLDLSNCS 336 (840)
Q Consensus 275 ~----l~~l-~~L~~L~L~~~~~~~--~~~----i~~-L~~L~~L~l~~~~l~-----~lp~~i~~L~-~L~~L~L~~~~ 336 (840)
. +..+ ++|++|++++|.++. +.. +.. .++|++|++++|.++ .++..+..++ +|++|++++ +
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-n 177 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG-N 177 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT-S
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC-C
Confidence 2 3333 566666666666655 222 223 246666666666665 3444445554 666666666 3
Q ss_pred CCCccCccc----ccCC-CCCcEEEccCCccc
Q 003193 337 KLKEIRPNV----ISNL-TRLEELYMGNSFTQ 363 (840)
Q Consensus 337 ~l~~~p~~~----l~~L-~~L~~L~l~~~~~~ 363 (840)
.++..+... +... ++|++|++++|.+.
T Consensus 178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 178 NLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred CCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 444443321 2333 46666666666543
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=5.1e-13 Score=149.98 Aligned_cols=168 Identities=18% Similarity=0.209 Sum_probs=139.0
Q ss_pred cchhhhhhccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCC
Q 003193 200 DLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCL 279 (840)
Q Consensus 200 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l 279 (840)
.+..+|....++++.|++++|.+..+| ..+++|++|++++|.+.. +|. + .+ +|++|++++|.++.+|. .+
T Consensus 70 ~L~~lp~~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~-ip~-l-~~--~L~~L~Ls~N~l~~lp~---~l 139 (571)
T 3cvr_A 70 NLSSLPDNLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLST-LPE-L-PA--SLKHLDVDNNQLTMLPE---LP 139 (571)
T ss_dssp CCSCCCSCCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCC-C-CT--TCCEEECCSSCCSCCCC---CC
T ss_pred CCCccCHhHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC-cch-h-hc--CCCEEECCCCcCCCCCC---cC
Confidence 344456555688999999999999998 457999999999999875 777 4 44 99999999999999987 68
Q ss_pred CCCCEEEccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCC-------
Q 003193 280 INLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL------- 352 (840)
Q Consensus 280 ~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L------- 352 (840)
++|++|++++|.++..+. .+++|++|++++|.++.+|. +. ++|++|++++ +.+..+|. +.. +|
T Consensus 140 ~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~-N~L~~lp~--~~~--~L~~~~~~L 209 (571)
T 3cvr_A 140 ALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVST-NLLESLPA--VPV--RNHHSEETE 209 (571)
T ss_dssp TTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCS-SCCSSCCC--CC----------CC
T ss_pred ccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcC-CCCCchhh--HHH--hhhcccccc
Confidence 999999999999998333 68899999999999999998 66 9999999999 68888887 444 77
Q ss_pred cEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCC
Q 003193 353 EELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQV 395 (840)
Q Consensus 353 ~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~ 395 (840)
+.|++++|.+.. ....+..+++|+.|++++|.+..
T Consensus 210 ~~L~Ls~N~l~~--------lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 210 IFFRCRENRITH--------IPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp EEEECCSSCCCC--------CCGGGGGSCTTEEEECCSSSCCH
T ss_pred eEEecCCCccee--------cCHHHhcCCCCCEEEeeCCcCCC
Confidence 999999998752 22456678999999999998753
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=2.8e-13 Score=127.83 Aligned_cols=138 Identities=27% Similarity=0.250 Sum_probs=87.5
Q ss_pred CCCCcEEEcCCCCCC--CCChhhcCCCCCCEEEccCCccCCcccccCCCCCCEEeecCCCCcc-cChhhcCCCCCCEEEc
Q 003193 256 MTELRVLDLTGFRFH--SLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQ-LPREIGQLTCLKLLDL 332 (840)
Q Consensus 256 l~~Lr~L~l~~~~~~--~lp~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~L 332 (840)
.++|++|++++|.++ .+|..+..+++|++|++++|.+.....++.+++|++|++++|.++. +|..+.++++|++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 356777777777766 6666667777777777777776666666677777777777777765 5666666777777777
Q ss_pred cCCCCCCccCc-ccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCC
Q 003193 333 SNCSKLKEIRP-NVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQ 398 (840)
Q Consensus 333 ~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 398 (840)
++ +.+..+|. ..++.+++|++|++++|.+..... .....+..+++|+.|+++.+.....|.
T Consensus 103 s~-N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 103 SG-NKLKDISTLEPLKKLECLKSLDLFNCEVTNLND----YRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp BS-SSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT----HHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred cC-CccCcchhHHHHhcCCCCCEEEeeCCcCcchHH----HHHHHHHhCccCcEecCCCCChhhccc
Confidence 77 45666542 236677777777777765432100 001245566777777777766655554
No 120
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=1.1e-14 Score=156.42 Aligned_cols=107 Identities=13% Similarity=0.126 Sum_probs=47.5
Q ss_pred CCCCCcEEEcCCCCCCCCC-----hhhcCCC-CCCEEEccCCccCC--cccccCC-----CCCCEEeecCCCCcccChh-
Q 003193 255 GMTELRVLDLTGFRFHSLP-----SSLGCLI-NLRTLSLENCLVVD--VAIIGDL-----KKLEILSLKHSSIEQLPRE- 320 (840)
Q Consensus 255 ~l~~Lr~L~l~~~~~~~lp-----~~l~~l~-~L~~L~L~~~~~~~--~~~i~~L-----~~L~~L~l~~~~l~~lp~~- 320 (840)
..++|++|++++|.++..+ ..+.+++ +|++|++++|.+.. +..++.+ ++|++|++++|.++..+..
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 3334555555555554433 3444444 45555555555444 2333332 5555555555555433221
Q ss_pred ----hcCC-CCCCEEEccCCCCCCccCcccc----cC-CCCCcEEEccCCcc
Q 003193 321 ----IGQL-TCLKLLDLSNCSKLKEIRPNVI----SN-LTRLEELYMGNSFT 362 (840)
Q Consensus 321 ----i~~L-~~L~~L~L~~~~~l~~~p~~~l----~~-L~~L~~L~l~~~~~ 362 (840)
+..+ ++|++|++++ +.++..+...+ .. .++|++|++++|.+
T Consensus 100 l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 150 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGW-NDFSSKSSSEFKQAFSNLPASITSLNLRGNDL 150 (362)
T ss_dssp HHHHHHTSCTTCCEEECCS-SCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred HHHHHHhCCCCccEEECcC-CcCCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence 2333 4555555555 23444333221 12 13555555555543
No 121
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.45 E-value=1.1e-14 Score=157.99 Aligned_cols=167 Identities=13% Similarity=0.114 Sum_probs=104.6
Q ss_pred ccCCccc-CCCcceeEeeccCccccCCCch---hhcCCCCCcEEEcCCCCCCC----CChhh-------cCCCCCCEEEc
Q 003193 223 YELPERL-GFLKLKLFLFFTENLSLQIPDP---FFEGMTELRVLDLTGFRFHS----LPSSL-------GCLINLRTLSL 287 (840)
Q Consensus 223 ~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~---~~~~l~~Lr~L~l~~~~~~~----lp~~l-------~~l~~L~~L~L 287 (840)
..++..+ .+++|++|++++|.+....+.. .+..+++|++|++++|.+.. +|..+ ..+++|++|+|
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 3444443 5777888888887765432222 24577888888888875543 34444 67788888888
Q ss_pred cCCccCC------cccccCCCCCCEEeecCCCCc-----ccChhhcCC---------CCCCEEEccCCCCCC--ccCc--
Q 003193 288 ENCLVVD------VAIIGDLKKLEILSLKHSSIE-----QLPREIGQL---------TCLKLLDLSNCSKLK--EIRP-- 343 (840)
Q Consensus 288 ~~~~~~~------~~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~L---------~~L~~L~L~~~~~l~--~~p~-- 343 (840)
++|.+.. +..+.++++|++|++++|.++ .++..+..+ ++|++|++++| .+. .++.
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~ 180 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWA 180 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHH
Confidence 8887765 346677888888888888776 233334444 78888888874 443 2331
Q ss_pred ccccCCCCCcEEEccCCcccceecCCCCCCcc-cccCCCCCCeEEEecCCC
Q 003193 344 NVISNLTRLEELYMGNSFTQWKVEGQSNASLG-ELKQLSRLTTLEVHIPDA 393 (840)
Q Consensus 344 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~-~l~~l~~L~~L~l~~~~~ 393 (840)
..+..+++|++|++++|.+..... ...+. .+..+++|+.|++++|.+
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~---~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGI---EHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHH---HHHHHTTGGGCTTCCEEECCSSCC
T ss_pred HHHHhCCCcCEEECcCCCCCHhHH---HHHHHHHhhcCCCccEEECcCCCC
Confidence 125667788888888776531100 00112 556677777777777665
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=3.3e-13 Score=127.36 Aligned_cols=132 Identities=19% Similarity=0.170 Sum_probs=83.0
Q ss_pred ccCCCcEEEeccCCcc--cCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCC-CChhhcCCCCCC
Q 003193 208 IDEAPTAISIPFRGIY--ELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHS-LPSSLGCLINLR 283 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~l~~l~~L~ 283 (840)
.++++++|++++|.+. .+|..+ .+++|++|++++|.+... ..+..+++|++|++++|.++. +|..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 4466777777777775 666553 566677777766665432 234666667777777776665 555555666677
Q ss_pred EEEccCCccCC-c--ccccCCCCCCEEeecCCCCcccCh----hhcCCCCCCEEEccCCCCCCccCc
Q 003193 284 TLSLENCLVVD-V--AIIGDLKKLEILSLKHSSIEQLPR----EIGQLTCLKLLDLSNCSKLKEIRP 343 (840)
Q Consensus 284 ~L~L~~~~~~~-~--~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~L~~~~~l~~~p~ 343 (840)
+|++++|.++. + ..++++++|++|++++|.++.+|. .+..+++|++|++++| .+.++|.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 77776666665 3 456666666666666666666654 5566666666666663 4444443
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=1.9e-13 Score=126.20 Aligned_cols=102 Identities=26% Similarity=0.327 Sum_probs=43.7
Q ss_pred cCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcccC--hhhcCCCCCCE
Q 003193 254 EGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLP--REIGQLTCLKL 329 (840)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~ 329 (840)
..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. |..++++++|++|++++|.++.+| ..++.+++|++
T Consensus 39 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred hhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence 3444444444444444443 334444444444444444443 222333444444444444444432 34444444444
Q ss_pred EEccCCCCCCccCc---ccccCCCCCcEEEc
Q 003193 330 LDLSNCSKLKEIRP---NVISNLTRLEELYM 357 (840)
Q Consensus 330 L~L~~~~~l~~~p~---~~l~~L~~L~~L~l 357 (840)
|++++ +.+..+|. ..++.+++|++|++
T Consensus 118 L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 118 LDLFN-CEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTT-CGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EeCcC-CcccchHHHHHHHHHHCCCcccccC
Confidence 44444 23333333 22344444444443
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.41 E-value=1.7e-12 Score=125.18 Aligned_cols=122 Identities=20% Similarity=0.320 Sum_probs=96.0
Q ss_pred eEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCC
Q 003193 236 LFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSS 313 (840)
Q Consensus 236 ~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~ 313 (840)
+++++++.+. .+|..+ .++|++|++++|.++.+|..+.++++|++|++++|.++. +..+.++++|++|++++|.
T Consensus 14 ~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4455555443 455543 247888888888888888888888889999998888887 4568888889999998888
Q ss_pred CcccCh-hhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcc
Q 003193 314 IEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 314 l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 362 (840)
++.+|. .+..+++|++|++++ +.+..+|...+..+++|+.|++++|.+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCe
Confidence 888765 578888999999988 678888877778888888888888754
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=2.6e-15 Score=169.77 Aligned_cols=190 Identities=20% Similarity=0.236 Sum_probs=121.4
Q ss_pred cCCCcEEEeccCCcccCCccc-CCCcceeEeeccCc-------------cccCCCchhhcCCCCCcEEE-cCCCCCCCCC
Q 003193 209 DEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTEN-------------LSLQIPDPFFEGMTELRVLD-LTGFRFHSLP 273 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~-------------~~~~~~~~~~~~l~~Lr~L~-l~~~~~~~lp 273 (840)
.+.+++|+++.|.+..+|..+ .+++|+.|++.+|. ..+. ++..++.+++|+.|+ ++.+.+..++
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~-~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG-HHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccC-CHHHHHHHHhcccCcchhhcccchhh
Confidence 345667777777777777665 57777777775543 2222 223335566666666 4444332222
Q ss_pred h------hhcC--CCCCCEEEccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCccc
Q 003193 274 S------SLGC--LINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNV 345 (840)
Q Consensus 274 ~------~l~~--l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~ 345 (840)
. .+.. ...|++|++++|.++..+.++++++|++|++++|.++.+|..++++++|++|++++ +.++.+| .
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~- 503 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD-G- 503 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-G-
T ss_pred hhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc-c-
Confidence 1 1111 12577888888877773347888888888888888888888888888888888887 5677776 3
Q ss_pred ccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcc-----cccCcceE
Q 003193 346 ISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-----VFVELERF 408 (840)
Q Consensus 346 l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L 408 (840)
++++++|++|++++|.+.... .+..+..+++|+.|++++|.+...+... .+++|+.|
T Consensus 504 l~~l~~L~~L~Ls~N~l~~~~------~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQSA------AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp GTTCSSCCEEECCSSCCCSSS------TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred cCCCCCCcEEECCCCCCCCCC------CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 778888888888877654321 0356677778888888887776665542 24555554
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=8.4e-13 Score=121.77 Aligned_cols=124 Identities=19% Similarity=0.175 Sum_probs=110.3
Q ss_pred ccCCCcEEEeccCCcc--cCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCC-CChhhcCCCCCC
Q 003193 208 IDEAPTAISIPFRGIY--ELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHS-LPSSLGCLINLR 283 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~l~~l~~L~ 283 (840)
.+.++++|++++|.+. .+|..+ .+++|+.|++++|.+... ..+..+++|++|++++|.++. +|..++.+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 4567999999999997 788765 799999999999987654 446899999999999999997 788888899999
Q ss_pred EEEccCCccCC-c--ccccCCCCCCEEeecCCCCcccCh----hhcCCCCCCEEEccC
Q 003193 284 TLSLENCLVVD-V--AIIGDLKKLEILSLKHSSIEQLPR----EIGQLTCLKLLDLSN 334 (840)
Q Consensus 284 ~L~L~~~~~~~-~--~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~L~~ 334 (840)
+|++++|.++. + ..++.+++|++|++++|.++.+|. .++.+++|++|++++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999998 4 889999999999999999998886 689999999999863
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.38 E-value=2.1e-12 Score=124.62 Aligned_cols=104 Identities=19% Similarity=0.257 Sum_probs=58.1
Q ss_pred CCcEEEcCCCCCCCCChh--hcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEc
Q 003193 258 ELRVLDLTGFRFHSLPSS--LGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDL 332 (840)
Q Consensus 258 ~Lr~L~l~~~~~~~lp~~--l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L 332 (840)
+|++|++++|.++.++.. ++.+++|++|++++|.++. |..++++++|++|++++|+++.+|.. +..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 555556666555555432 5555666666666665555 34555566666666666655555433 555666666666
Q ss_pred cCCCCCCccCcccccCCCCCcEEEccCCcc
Q 003193 333 SNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 333 ~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 362 (840)
++ +.+..+++..++.+++|++|++++|.+
T Consensus 110 ~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 110 YD-NQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CS-SCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CC-CcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 65 345444444455566666666665543
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.37 E-value=3.1e-12 Score=123.35 Aligned_cols=125 Identities=22% Similarity=0.343 Sum_probs=109.2
Q ss_pred cEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cc--cccCCCCCCEEeecCCCCccc-ChhhcCCCCCCEEEccCC
Q 003193 260 RVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VA--IIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNC 335 (840)
Q Consensus 260 r~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~--~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~L~~~ 335 (840)
++++++++.++.+|..+.. +|++|++++|.+.. +. .++++++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~- 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE- 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC-
Confidence 7899999999999987754 99999999999988 43 389999999999999999988 67899999999999999
Q ss_pred CCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCC
Q 003193 336 SKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (840)
Q Consensus 336 ~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 394 (840)
+.+..+++..++.+++|++|++++|.+....+ ..+..+++|+.|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-------GSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECT-------TSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCH-------HHhhcCCCCCEEEeCCCCcc
Confidence 68888888778999999999999998765433 56777889999999988654
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=5.2e-13 Score=127.02 Aligned_cols=101 Identities=19% Similarity=0.230 Sum_probs=46.1
Q ss_pred CCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-ccc-ccCCCCCCEEeecCCCCcccCh--hhcCCCCCCEEEcc
Q 003193 258 ELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAI-IGDLKKLEILSLKHSSIEQLPR--EIGQLTCLKLLDLS 333 (840)
Q Consensus 258 ~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~-i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~L~ 333 (840)
+|++|++++|.++.+ +.++.+++|++|++++|.++. ++. ++.+++|++|++++|.++.+|. .+..+++|++|+++
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEec
Confidence 455555555544444 344444455555555544444 222 2444455555555544444443 44444455555554
Q ss_pred CCCCCCccCcc---cccCCCCCcEEEccCC
Q 003193 334 NCSKLKEIRPN---VISNLTRLEELYMGNS 360 (840)
Q Consensus 334 ~~~~l~~~p~~---~l~~L~~L~~L~l~~~ 360 (840)
+ +.+..+|.. .++.+++|+.|++++|
T Consensus 122 ~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 122 R-NPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp S-SGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred C-CCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 4 233344332 2344444444444443
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=8.8e-13 Score=154.00 Aligned_cols=153 Identities=20% Similarity=0.216 Sum_probs=102.0
Q ss_pred cCCCcEEEeccCCcccCCccc-CCCcceeEeec-----cCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCC
Q 003193 209 DEAPTAISIPFRGIYELPERL-GFLKLKLFLFF-----TENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINL 282 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~-----~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L 282 (840)
...++++++..+.+...+... ...+|+.+.+. .|.+ .++...+..++.|++|+|++|.+..+|..+.++++|
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~--~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM--VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL 249 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce--ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence 456788888888876655432 33444443332 2322 255666789999999999999999999999999999
Q ss_pred CEEEccCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCc
Q 003193 283 RTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF 361 (840)
Q Consensus 283 ~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 361 (840)
++|+|++|.++. |..++++++|++|+|++|.++.+|..+++|++|++|+|++ +.++.+|.. |+++++|++|++++|.
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~lp~~-~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NMVTTLPWE-FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS-SCCCCCCSS-TTSCTTCCCEECTTSC
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC-CCCCccChh-hhcCCCccEEeCCCCc
Confidence 999999999988 8889999999999999999999999999999999999999 578899987 8999999999999998
Q ss_pred ccce
Q 003193 362 TQWK 365 (840)
Q Consensus 362 ~~~~ 365 (840)
+...
T Consensus 328 l~~~ 331 (727)
T 4b8c_D 328 LEKQ 331 (727)
T ss_dssp CCSH
T ss_pred cCCC
Confidence 7643
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=1e-11 Score=119.61 Aligned_cols=124 Identities=22% Similarity=0.284 Sum_probs=107.4
Q ss_pred cEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cccccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccCCCC
Q 003193 260 RVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSK 337 (840)
Q Consensus 260 r~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~ 337 (840)
++++++++.++.+|..+. .+|++|++++|.++. |..++++++|++|++++|.++.++. .+..+++|++|++++ +.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC-Cc
Confidence 689999999999998764 689999999999988 7899999999999999999998874 589999999999999 68
Q ss_pred CCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCC
Q 003193 338 LKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDA 393 (840)
Q Consensus 338 l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 393 (840)
+..+++..++.+++|++|++++|.+..... ..+..+++|+.|++++|..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPE-------GAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCT-------TTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeCh-------hhhhcCccccEEEeCCCCe
Confidence 889988779999999999999998763222 3466788899999987764
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=2.6e-12 Score=122.17 Aligned_cols=125 Identities=17% Similarity=0.168 Sum_probs=110.3
Q ss_pred ccCCCcEEEeccCCcccCCcccCCC-cceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhh-cCCCCCCEE
Q 003193 208 IDEAPTAISIPFRGIYELPERLGFL-KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSL-GCLINLRTL 285 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l-~~l~~L~~L 285 (840)
...+++.|++++|.+..++....+. +|+.|++++|.+... ..+..+++|++|++++|.++.+|+.+ ..+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4678999999999998887655555 999999999998753 23689999999999999999988665 899999999
Q ss_pred EccCCccCC-cc--cccCCCCCCEEeecCCCCcccChh----hcCCCCCCEEEccCC
Q 003193 286 SLENCLVVD-VA--IIGDLKKLEILSLKHSSIEQLPRE----IGQLTCLKLLDLSNC 335 (840)
Q Consensus 286 ~L~~~~~~~-~~--~i~~L~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~L~~~ 335 (840)
++++|.+.. +. .++.+++|++|++++|.++.+|.. ++.+++|++|+++++
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 999999988 54 789999999999999999999985 899999999999985
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=5.6e-13 Score=155.67 Aligned_cols=131 Identities=20% Similarity=0.253 Sum_probs=109.9
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cccccCCCCCCEEe
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILS 308 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~ 308 (840)
.++.|+.|++++|.+. .+|..++ ++++|++|+|++|.++.+|..|++|++|++|+|++|.++. |..+++|++|++|+
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred cCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 7899999999999987 7888875 7999999999999999999999999999999999999998 88999999999999
Q ss_pred ecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCC-CcEEEccCCccc
Q 003193 309 LKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTR-LEELYMGNSFTQ 363 (840)
Q Consensus 309 l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~-L~~L~l~~~~~~ 363 (840)
|++|.++.+|..++++++|++|+|++ +.+...++..+..+.. +..|++.+|.+.
T Consensus 300 L~~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 300 FFDNMVTTLPWEFGNLCNLQFLGVEG-NPLEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp CCSSCCCCCCSSTTSCTTCCCEECTT-SCCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCccChhhhcCCCccEEeCCC-CccCCCChHHHhhcchhhhHHhhccCccc
Confidence 99999999999999999999999999 5566554443443321 123556666543
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=3.2e-11 Score=114.74 Aligned_cols=105 Identities=28% Similarity=0.434 Sum_probs=64.2
Q ss_pred CCCcEEEcCCCCCCCCCh-hhcCCCCCCEEEccCCccCC-c-ccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEc
Q 003193 257 TELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDL 332 (840)
Q Consensus 257 ~~Lr~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L 332 (840)
++|++|++++|.++.+|. .++.+++|++|++++|.++. + ..++++++|++|++++|.++.+|.. +.++++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 456666666666665543 34566666666666666655 2 3356666666666666666666543 456666666666
Q ss_pred cCCCCCCccCcccccCCCCCcEEEccCCcc
Q 003193 333 SNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 333 ~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 362 (840)
++ +.+..+|...+..+++|++|++++|.+
T Consensus 108 ~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 108 DT-NQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CS-SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cC-CcceEeCHHHhcCCcccCEEEecCCCe
Confidence 66 456666665556666666666666644
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=3.2e-11 Score=114.73 Aligned_cols=123 Identities=23% Similarity=0.354 Sum_probs=106.1
Q ss_pred CcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChh-hcCCCCCCEEEccCC
Q 003193 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLENC 290 (840)
Q Consensus 212 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-l~~l~~L~~L~L~~~ 290 (840)
.+.++++++.+..+|... .++++.|++++|.+. .++...|.++++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC-CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 357888888888888544 478999999999876 56666778999999999999999988755 689999999999999
Q ss_pred ccCC-c-ccccCCCCCCEEeecCCCCcccChhh-cCCCCCCEEEccCCC
Q 003193 291 LVVD-V-AIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCS 336 (840)
Q Consensus 291 ~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~L~~~~ 336 (840)
.++. + ..++++++|++|++++|.++.+|..+ ..+++|++|++++|.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 9998 4 45789999999999999999998764 789999999999953
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.25 E-value=1.2e-13 Score=134.19 Aligned_cols=132 Identities=24% Similarity=0.318 Sum_probs=90.5
Q ss_pred hcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEE
Q 003193 253 FEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLD 331 (840)
Q Consensus 253 ~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 331 (840)
+..+++|++|++++|.++.+| .+.++++|++|++++|.+.. |..++.+++|++|++++|+++.+| .++.+++|++|+
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY 121 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence 467778888888888877777 77778888888888887777 666666778888888888887776 577788888888
Q ss_pred ccCCCCCCccCc-ccccCCCCCcEEEccCCcccceecCC---CCCCcccccCCCCCCeEE
Q 003193 332 LSNCSKLKEIRP-NVISNLTRLEELYMGNSFTQWKVEGQ---SNASLGELKQLSRLTTLE 387 (840)
Q Consensus 332 L~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~~~~~~~---~~~~l~~l~~l~~L~~L~ 387 (840)
+++ +.+..++. ..+..+++|++|++++|.+....+.. .......+..+++|+.|+
T Consensus 122 l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 122 MSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ESE-EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCC-CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 887 56666554 33677888888888877654322100 000012255666777665
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=2.1e-11 Score=137.72 Aligned_cols=123 Identities=20% Similarity=0.221 Sum_probs=104.8
Q ss_pred CCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCC
Q 003193 258 ELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCS 336 (840)
Q Consensus 258 ~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~ 336 (840)
.|++|++++|.++.+|. ++.+++|++|++++|.++. |..++++++|++|++++|.++.+| .++++++|++|++++ +
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~-N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN-N 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS-S
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC-C
Confidence 59999999999999997 9999999999999999999 899999999999999999999999 899999999999999 6
Q ss_pred CCCcc--CcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEE
Q 003193 337 KLKEI--RPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEV 388 (840)
Q Consensus 337 ~l~~~--p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l 388 (840)
.+..+ |.. ++.+++|++|++++|.+....+ ....-+..+++|+.|++
T Consensus 519 ~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~----~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG----IQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS----CTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc----HHHHHHHHCcccCccCC
Confidence 78888 555 8999999999999998754322 11122344778888753
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.20 E-value=7.9e-11 Score=111.20 Aligned_cols=101 Identities=24% Similarity=0.403 Sum_probs=78.8
Q ss_pred cEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCC
Q 003193 260 RVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCS 336 (840)
Q Consensus 260 r~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~ 336 (840)
+.++++++.++.+|..+. .+|++|++++|.+.. +..++++++|++|++++|+++.+|.. +.++++|++|++++ +
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-N 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-C
Confidence 677888888888887664 778888888888777 45678888888888888888888765 47788888888887 6
Q ss_pred CCCccCcccccCCCCCcEEEccCCccc
Q 003193 337 KLKEIRPNVISNLTRLEELYMGNSFTQ 363 (840)
Q Consensus 337 ~l~~~p~~~l~~L~~L~~L~l~~~~~~ 363 (840)
.+..+|+..++.+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 777777766778888888888877553
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.19 E-value=9.7e-11 Score=110.25 Aligned_cols=102 Identities=24% Similarity=0.359 Sum_probs=81.9
Q ss_pred CcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCC
Q 003193 259 LRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNC 335 (840)
Q Consensus 259 Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~ 335 (840)
.++++++++.++.+|..+. .+|++|++++|.++. +..++++++|++|++++|+++.+|.. +.++++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~- 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND- 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-
Confidence 4678888888888887663 788888888888877 56688888888888888888888765 47888888888888
Q ss_pred CCCCccCcccccCCCCCcEEEccCCccc
Q 003193 336 SKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (840)
Q Consensus 336 ~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 363 (840)
+.+..+|+..+.++++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6788888776788888888888887553
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=1.1e-12 Score=127.39 Aligned_cols=142 Identities=20% Similarity=0.213 Sum_probs=115.4
Q ss_pred CCcEEEeccC--CcccCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEc
Q 003193 211 APTAISIPFR--GIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (840)
Q Consensus 211 ~l~~L~l~~~--~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L 287 (840)
.++...+.+. .+..+|..+ .+++|++|++++|.+.. +| .+.++++|++|++++|.++.+|..+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 3445555543 445555444 78999999999998775 66 458899999999999999999998888999999999
Q ss_pred cCCccCCcccccCCCCCCEEeecCCCCcccCh--hhcCCCCCCEEEccCCCCCCccCc----------ccccCCCCCcEE
Q 003193 288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRP----------NVISNLTRLEEL 355 (840)
Q Consensus 288 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~L~~~~~l~~~p~----------~~l~~L~~L~~L 355 (840)
++|.++..+.++++++|++|++++|.++.+|. .+..+++|++|++++| .+...++ ..+..+++|+.|
T Consensus 101 ~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred cCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEE
Confidence 99999995579999999999999999998875 7899999999999995 4533322 236889999999
Q ss_pred E
Q 003193 356 Y 356 (840)
Q Consensus 356 ~ 356 (840)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 7
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.07 E-value=5.8e-10 Score=105.22 Aligned_cols=102 Identities=22% Similarity=0.302 Sum_probs=63.6
Q ss_pred eEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCccCC-cc-cccCCCCCCEEeecCC
Q 003193 236 LFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVD-VA-IIGDLKKLEILSLKHS 312 (840)
Q Consensus 236 ~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~-~~-~i~~L~~L~~L~l~~~ 312 (840)
.++++++.+. .+|..+ .++|++|++++|.++.+ |..++++++|++|+|++|.++. |. .++++++|++|++++|
T Consensus 16 ~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp EEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4444444432 445433 25667777777777665 4556677777777777777666 33 3466777777777777
Q ss_pred CCcccChh-hcCCCCCCEEEccCCCCCCccC
Q 003193 313 SIEQLPRE-IGQLTCLKLLDLSNCSKLKEIR 342 (840)
Q Consensus 313 ~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p 342 (840)
+++.+|.. +..+++|++|++++ +.+...+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~-N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYN-NPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCS-SCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCC-CCccccc
Confidence 77777654 66777777777777 4444443
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.01 E-value=1.4e-09 Score=102.20 Aligned_cols=95 Identities=25% Similarity=0.340 Sum_probs=58.1
Q ss_pred eEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCccCC-c-ccccCCCCCCEEeecCC
Q 003193 236 LFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLKHS 312 (840)
Q Consensus 236 ~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~ 312 (840)
++++++|.+. .+|..+ .++|++|++++|.++.+ |..|.++++|++|+|++|.++. + ..+.++++|++|++++|
T Consensus 13 ~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 13 TVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp EEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3444444433 344433 25566666666666665 4456666677777777766666 3 33566777777777777
Q ss_pred CCcccChh-hcCCCCCCEEEccC
Q 003193 313 SIEQLPRE-IGQLTCLKLLDLSN 334 (840)
Q Consensus 313 ~l~~lp~~-i~~L~~L~~L~L~~ 334 (840)
+++.+|.. +.++++|++|++++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCS
T ss_pred ccCEeCHHHhcCCCCCCEEEeCC
Confidence 77766653 66677777777776
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.96 E-value=1.4e-09 Score=114.68 Aligned_cols=15 Identities=13% Similarity=-0.017 Sum_probs=11.9
Q ss_pred cCCCcEEEeccCCcc
Q 003193 209 DEAPTAISIPFRGIY 223 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~ 223 (840)
..+++.|++++|.+.
T Consensus 48 l~~L~~LdLs~n~i~ 62 (329)
T 3sb4_A 48 FPSLKVLDISNAEIK 62 (329)
T ss_dssp CTTCCEEEEEEEEEC
T ss_pred hccCeEEecCcceeE
Confidence 567888888888776
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.86 E-value=5.3e-09 Score=110.30 Aligned_cols=104 Identities=12% Similarity=0.137 Sum_probs=69.1
Q ss_pred hccCCCcEEEeccCCc-ccCCcccC-CCcceeEeeccCcccc-------------------CCCchhhcC--------CC
Q 003193 207 KIDEAPTAISIPFRGI-YELPERLG-FLKLKLFLFFTENLSL-------------------QIPDPFFEG--------MT 257 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~-~~l~~~~~-~~~L~~L~l~~~~~~~-------------------~~~~~~~~~--------l~ 257 (840)
....++++|.++++-- ..+..... +++|++|++++|.+.. .+|+..|.+ ++
T Consensus 22 ~~~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~ 101 (329)
T 3sb4_A 22 EEANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ 101 (329)
T ss_dssp HHHHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred hhhCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccC
Confidence 3456788888876411 11111112 7889999999887650 356667777 88
Q ss_pred CCcEEEcCCCCCCCCC-hhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecC
Q 003193 258 ELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKH 311 (840)
Q Consensus 258 ~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~ 311 (840)
+|+.|++.+ .++.++ ..|.++.+|+.+++.+|.+.. +..|..+.++.++.+..
T Consensus 102 ~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 102 TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 888888888 777775 457888888888888887655 45566666666665544
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.80 E-value=1.3e-08 Score=108.32 Aligned_cols=99 Identities=23% Similarity=0.210 Sum_probs=69.1
Q ss_pred EEEcCCC-CCCCCChhhcCCCCCCEEEccC-CccCC--cccccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccCC
Q 003193 261 VLDLTGF-RFHSLPSSLGCLINLRTLSLEN-CLVVD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNC 335 (840)
Q Consensus 261 ~L~l~~~-~~~~lp~~l~~l~~L~~L~L~~-~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~ 335 (840)
.++++++ .++.+|. +..+.+|++|+|++ |.+.. +..+++|.+|++|+|++|+++.+|. .+.+|++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~- 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF- 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-
Confidence 3466666 6777777 77777777777775 77766 3567777777777777777776654 457777777777777
Q ss_pred CCCCccCcccccCCCCCcEEEccCCcc
Q 003193 336 SKLKEIRPNVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 336 ~~l~~~p~~~l~~L~~L~~L~l~~~~~ 362 (840)
+.+..+|+..+..+. |+.|++.+|.+
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCc
Confidence 567777766555554 77777777654
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.70 E-value=1.8e-07 Score=100.75 Aligned_cols=256 Identities=10% Similarity=0.139 Sum_probs=140.3
Q ss_pred CCCcEEEeccCCcccCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-hhhcCCCCCCEEEc
Q 003193 210 EAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSL 287 (840)
Q Consensus 210 ~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L 287 (840)
..++.+.+.. .+..++... .-.+|+.+.+..+ ...++...|.+. +|+.+.+.. .++.++ ..|.++.+|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccCCccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 4455555542 344444322 2236777777654 234556666664 577777775 555553 45777788888888
Q ss_pred cCCccCC-cccccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccce
Q 003193 288 ENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWK 365 (840)
Q Consensus 288 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~ 365 (840)
.+|.+.. +.......+|+.+.+.. .++.++. .+.++++|+.+++.. .+..++...|.+ .+|+.+.+..+ +. .
T Consensus 188 ~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~~-i~-~ 261 (401)
T 4fdw_A 188 SKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPNG-VT-N 261 (401)
T ss_dssp TTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEETT-CC-E
T ss_pred CCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCCC-cc-E
Confidence 7777766 43333357788887764 3666653 466777888888775 466677666666 67777777443 11 1
Q ss_pred ecCCCCCCcccccCCCCCCeEEEecCCCC-----CCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchh
Q 003193 366 VEGQSNASLGELKQLSRLTTLEVHIPDAQ-----VMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGY 440 (840)
Q Consensus 366 ~~~~~~~~l~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~ 440 (840)
+ .-..+.++++|+.+.+..+... .++... +..+.+|+.+.+. +....++.
T Consensus 262 I------~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a------------------F~~c~~L~~l~l~-~~i~~I~~ 316 (401)
T 4fdw_A 262 I------ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC------------------LEGCPKLARFEIP-ESIRILGQ 316 (401)
T ss_dssp E------CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT------------------TTTCTTCCEECCC-TTCCEECT
T ss_pred E------ChhHhhCCCCCCEEEeCCccccCCcccEECHHH------------------hhCCccCCeEEeC-CceEEEhh
Confidence 1 1144566777777777765443 122221 2223333333333 12223333
Q ss_pred hHHHHHhcccceeeccccccccccc-cccchhhcccccEEEeecCCCeEEEEeCCCcccccc-ccceeeccc
Q 003193 441 GMKMLLKRTEDLHLDELAGFKNVVH-ELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFP-LLESLFLHN 510 (840)
Q Consensus 441 ~~~~~l~~L~~L~L~~~~~~~~~~~-~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~L~~L~l~~ 510 (840)
..+..+++|+.+.|..+ ++.+.. .| .++ +|+.+.+.++.- ..+. ...+.+++ +++.|++-.
T Consensus 317 ~aF~~c~~L~~l~lp~~--l~~I~~~aF---~~~-~L~~l~l~~n~~-~~l~--~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 317 GLLGGNRKVTQLTIPAN--VTQINFSAF---NNT-GIKEVKVEGTTP-PQVF--EKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp TTTTTCCSCCEEEECTT--CCEECTTSS---SSS-CCCEEEECCSSC-CBCC--CSSCCCSCTTCCEEEECG
T ss_pred hhhcCCCCccEEEECcc--ccEEcHHhC---CCC-CCCEEEEcCCCC-cccc--cccccCCCCCccEEEeCH
Confidence 33333456666766443 333322 23 456 888888887642 2221 11223443 567777654
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.67 E-value=3.2e-09 Score=113.30 Aligned_cols=156 Identities=14% Similarity=0.057 Sum_probs=99.0
Q ss_pred hccCCCcEEEeccCCcccCC-----ccc--CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-----Ch
Q 003193 207 KIDEAPTAISIPFRGIYELP-----ERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-----PS 274 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~-----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-----p~ 274 (840)
...+.++.|++++|.+.... ..+ ..++|+.|++++|.+...-...+...+++|++|++++|.++.. ..
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 45667889999999875322 111 2367888888888765433333444556788888888877632 22
Q ss_pred hh-cCCCCCCEEEccCCccCC------cccccCCCCCCEEeecCCCCcc-----cChhhcCCCCCCEEEccCCCCCCccC
Q 003193 275 SL-GCLINLRTLSLENCLVVD------VAIIGDLKKLEILSLKHSSIEQ-----LPREIGQLTCLKLLDLSNCSKLKEIR 342 (840)
Q Consensus 275 ~l-~~l~~L~~L~L~~~~~~~------~~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~l~~~p 342 (840)
.+ ....+|++|+|++|.+++ ...+...++|++|++++|.++. ++..+...++|++|++++| .++...
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHH
Confidence 22 245678888888887755 2334567778888888887763 3455666777888888774 454322
Q ss_pred cc----cccCCCCCcEEEccCCccc
Q 003193 343 PN----VISNLTRLEELYMGNSFTQ 363 (840)
Q Consensus 343 ~~----~l~~L~~L~~L~l~~~~~~ 363 (840)
.. .+...++|++|++++|.+.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCC
Confidence 11 1344577777777777553
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.66 E-value=1.1e-06 Score=94.62 Aligned_cols=142 Identities=14% Similarity=0.177 Sum_probs=102.2
Q ss_pred CCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-hhcCCCCCCEEEccCCccCC--cccccCCCCCCEE
Q 003193 231 FLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEIL 307 (840)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L 307 (840)
+..++.+.+..+ ...++...|.+. +|+.+.+..+ ++.+++ +|.+ .+|+.+.+.. .+.. ...+.++.+|+.+
T Consensus 112 ~~~l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTT--CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCc--cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 355666666543 224566667775 7999998876 666643 4555 4799999986 4554 5778899999999
Q ss_pred eecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEE
Q 003193 308 SLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLE 387 (840)
Q Consensus 308 ~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~ 387 (840)
++.+|+++.+|...-...+|+.+.+.. .+..++...|.++++|+.+.+..+- . .++ -..+.+ .+|+.+.
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~l-~-~I~------~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPENV-S-TIG------QEAFRE-SGITTVK 254 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTTC-C-EEC------TTTTTT-CCCSEEE
T ss_pred ecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCCc-c-Ccc------cccccc-CCccEEE
Confidence 999999999987766678999999985 4888888889999999999987642 1 111 122333 5677777
Q ss_pred Ee
Q 003193 388 VH 389 (840)
Q Consensus 388 l~ 389 (840)
+.
T Consensus 255 lp 256 (401)
T 4fdw_A 255 LP 256 (401)
T ss_dssp EE
T ss_pred eC
Confidence 74
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=5.9e-08 Score=103.15 Aligned_cols=99 Identities=21% Similarity=0.199 Sum_probs=73.5
Q ss_pred EeeccC-ccccCCCchhhcCCCCCcEEEcCC-CCCCCCC-hhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecC
Q 003193 237 FLFFTE-NLSLQIPDPFFEGMTELRVLDLTG-FRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKH 311 (840)
Q Consensus 237 L~l~~~-~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~~lp-~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~ 311 (840)
+++.++ .+. .+|. +..+++|++|+|++ |.++.+| ..|++|.+|++|+|++|.++. +..|++|++|++|+|++
T Consensus 13 v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 455555 333 5676 47788888888885 8888776 568888888888888888877 45678888888888888
Q ss_pred CCCcccChhhcCCCCCCEEEccCCCCCC
Q 003193 312 SSIEQLPREIGQLTCLKLLDLSNCSKLK 339 (840)
Q Consensus 312 ~~l~~lp~~i~~L~~L~~L~L~~~~~l~ 339 (840)
|+++.+|..+.....|++|++.+ +.+.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~-N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSG-NPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCS-SCCC
T ss_pred CccceeCHHHcccCCceEEEeeC-CCcc
Confidence 88888887655444588888887 4443
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.60 E-value=2.6e-09 Score=114.01 Aligned_cols=161 Identities=14% Similarity=0.121 Sum_probs=113.0
Q ss_pred CCcceeEeeccCccccCCCch----hhcCCCCCcEEEcCCCCCCC--CChhhcCCCCCCEEEccCCccCC--cccc----
Q 003193 231 FLKLKLFLFFTENLSLQIPDP----FFEGMTELRVLDLTGFRFHS--LPSSLGCLINLRTLSLENCLVVD--VAII---- 298 (840)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~----~~~~l~~Lr~L~l~~~~~~~--lp~~l~~l~~L~~L~L~~~~~~~--~~~i---- 298 (840)
.++|+.|++++|.+....... +....++|++|++++|.++. +..-...+.+|++|+|++|.+++ ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 567899999998865322111 11234799999999999863 22223346689999999999877 3333
Q ss_pred -cCCCCCCEEeecCCCCcc-----cChhhcCCCCCCEEEccCCCCCCccC----cccccCCCCCcEEEccCCcccceecC
Q 003193 299 -GDLKKLEILSLKHSSIEQ-----LPREIGQLTCLKLLDLSNCSKLKEIR----PNVISNLTRLEELYMGNSFTQWKVEG 368 (840)
Q Consensus 299 -~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~l~~~p----~~~l~~L~~L~~L~l~~~~~~~~~~~ 368 (840)
....+|++|++++|.++. ++..+...++|++|+|++| .++... ...+...++|++|++++|.+.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~- 228 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA- 228 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH-
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH-
Confidence 356889999999999874 5666788999999999994 565432 1225677899999999997642111
Q ss_pred CCCCCcccccCCCCCCeEEEecCCCCC
Q 003193 369 QSNASLGELKQLSRLTTLEVHIPDAQV 395 (840)
Q Consensus 369 ~~~~~l~~l~~l~~L~~L~l~~~~~~~ 395 (840)
......+...++|+.|++++|.+..
T Consensus 229 --~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 229 --LALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp --HHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred --HHHHHHHHhCCCCCEEeccCCCCCH
Confidence 0112345567889999999987653
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.40 E-value=1.2e-07 Score=87.47 Aligned_cols=89 Identities=16% Similarity=0.232 Sum_probs=49.6
Q ss_pred CcceEecccccchhhcccCCccccccCCCceEEEecccCCcceeechhhHhh----hcccceeeecccccchhhhccCcc
Q 003193 649 SLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNG----LEQLQQLDISHCKSMNEVINTRVG 724 (840)
Q Consensus 649 ~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~----l~sL~~L~i~~C~~L~~i~~~~~~ 724 (840)
.|++|++++|.+++.....+ ..+++|++|++++|.++++-.... +.. .++|++|+|++|+++++- |
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L----~~~~~L~~L~L~~C~~ItD~gL~~-L~~~~~~~~~L~~L~Ls~C~~ITD~-----G 131 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM----EGLQYVEKIRLCKCHYIEDGCLER-LSQLENLQKSMLEMEIISCGNVTDK-----G 131 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG----TTCSCCCEEEEESCTTCCHHHHHH-HHTCHHHHHHCCEEEEESCTTCCHH-----H
T ss_pred eEeEEeCcCCCccHHHHHHh----cCCCCCCEEEeCCCCccCHHHHHH-HHhcccccCCCCEEEcCCCCcCCHH-----H
Confidence 57788888887665433333 356777777777777777642211 222 235777777777766632 2
Q ss_pred cccCccccccccccccccccCCccee
Q 003193 725 RDDNMIEMVFPKLVSLQLSHLPKLTR 750 (840)
Q Consensus 725 ~~~~~~~~~l~sL~~L~i~~c~~L~~ 750 (840)
+.. ...+++|++|+|++|+.++.
T Consensus 132 l~~---L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIA---LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHH---GGGCTTCCEEEEESCTTCCC
T ss_pred HHH---HhcCCCCCEEECCCCCCCCc
Confidence 111 11145555555555555544
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.33 E-value=1.1e-05 Score=87.01 Aligned_cols=123 Identities=13% Similarity=0.190 Sum_probs=60.1
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-hhhcCCCCCCEEEccCCccCC-cccccCCCCCCEE
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEIL 307 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L 307 (840)
++.+|+.+.+..+ ...+....|.++.+|+.+++..+ ++.++ ..+.++..|+.+.+..+-..- ...+.+...++..
T Consensus 69 ~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 69 GCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEIT 145 (394)
T ss_dssp TCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEE
T ss_pred CCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccc
Confidence 5666777766532 22455566677777777777543 44442 345556666655554321110 2233333222222
Q ss_pred eecCCCCcccC-hhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccC
Q 003193 308 SLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359 (840)
Q Consensus 308 ~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~ 359 (840)
... .+..+. ..+.++++|+.+.+.. .+..++...+..+.+|+.+.+..
T Consensus 146 ~~~--~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 146 IPE--GVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp CCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCT
T ss_pred cCc--cccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCC
Confidence 111 112221 2345566666666653 34455555556666666665544
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=1.1e-07 Score=87.59 Aligned_cols=93 Identities=12% Similarity=0.166 Sum_probs=69.5
Q ss_pred CCceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccCccc-cccccccccccccCCcceeecCC
Q 003193 676 KNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIE-MVFPKLVSLQLSHLPKLTRFGIG 754 (840)
Q Consensus 676 ~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~-~~l~sL~~L~i~~c~~L~~l~~~ 754 (840)
..|++|++++|. +++... ..+.++++|++|++++|..+++- ++..-... ...++|++|+|++|+++++-...
T Consensus 61 ~~L~~LDLs~~~-Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~-----gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGF-DHMEGLQYVEKIRLCKCHYIEDG-----CLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCEEEEEEESCC-CCGGGG-GGGTTCSCCCEEEEESCTTCCHH-----HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred ceEeEEeCcCCC-ccHHHH-HHhcCCCCCCEEEeCCCCccCHH-----HHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 579999999997 776532 33578999999999999988743 22110000 01358999999999999886544
Q ss_pred CCccCCCcceEEeccCCCcce
Q 003193 755 DSVEFPSLCQLQIACCPNLKI 775 (840)
Q Consensus 755 ~~~~l~sL~~L~i~~C~~L~~ 775 (840)
.+.++++|++|+|++||++..
T Consensus 134 ~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCCC
T ss_pred HHhcCCCCCEEECCCCCCCCc
Confidence 455789999999999999854
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.20 E-value=2.2e-05 Score=84.72 Aligned_cols=301 Identities=17% Similarity=0.135 Sum_probs=166.3
Q ss_pred ccCCCcEEEeccCCcccCCccc--CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCE
Q 003193 208 IDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRT 284 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~ 284 (840)
...+++.+.+. +.+..+.... ++.+|+.+.+..+ ...++...|.++..|+.+.+..+ +..+ ...|.++..+..
T Consensus 69 ~c~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~ 144 (394)
T 4fs7_A 69 GCRKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEI 144 (394)
T ss_dssp TCTTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEE
T ss_pred CCCCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecceeeeccccccc
Confidence 34567888886 3466666543 7899999999754 23567777889999988777654 3333 334555554444
Q ss_pred EEccCCccCCcccccCCCCCCEEeecCCCCcccC-hhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccc
Q 003193 285 LSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (840)
Q Consensus 285 L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 363 (840)
.............+.++.+|+.+.+..+ ++.++ ..+..+.+|+.+++.. .++.++...+.++..|+.+.+..+...
T Consensus 145 ~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~--~~~~I~~~~F~~~~~L~~i~~~~~~~~ 221 (394)
T 4fs7_A 145 TIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR--NLKIIRDYCFAECILLENMEFPNSLYY 221 (394)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT--TCCEECTTTTTTCTTCCBCCCCTTCCE
T ss_pred ccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC--CceEeCchhhccccccceeecCCCceE
Confidence 4333333222567888999999999764 45555 3467788999998875 477777777888888888876654321
Q ss_pred ceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcc--cccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhh
Q 003193 364 WKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYG 441 (840)
Q Consensus 364 ~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~ 441 (840)
.. ...-...+|+.+.+... ...+.... ....++.+.+..+. ..++..
T Consensus 222 --i~-------~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~---------------------~~i~~~ 270 (394)
T 4fs7_A 222 --LG-------DFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK---------------------LRIGGS 270 (394)
T ss_dssp --EC-------TTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT---------------------CEECSC
T ss_pred --ee-------hhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCc---------------------ceeecc
Confidence 11 11112345666665422 22222221 33444444432111 011111
Q ss_pred HHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccc
Q 003193 442 MKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGK 521 (840)
Q Consensus 442 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~ 521 (840)
.+...+.++.+...... .....+ ..+.+|+.+.+.+. ++.+.. ..+..+.+|+.+.|.+ +++.+....
T Consensus 271 ~F~~~~~l~~~~~~~~~---i~~~~F---~~~~~L~~i~l~~~--i~~I~~--~aF~~c~~L~~i~lp~--~v~~I~~~a 338 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVI---VPEKTF---YGCSSLTEVKLLDS--VKFIGE--EAFESCTSLVSIDLPY--LVEEIGKRS 338 (394)
T ss_dssp TTTTCTTCCEEEECSSE---ECTTTT---TTCTTCCEEEECTT--CCEECT--TTTTTCTTCCEECCCT--TCCEECTTT
T ss_pred ccccccccceeccCcee---eccccc---cccccccccccccc--cceech--hhhcCCCCCCEEEeCC--cccEEhHHh
Confidence 11112333333332211 001112 45667777776543 444432 2334556777777753 355553332
Q ss_pred cccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEec
Q 003193 522 VRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTD 567 (840)
Q Consensus 522 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~ 567 (840)
+ ..+.+|+.+.+.. +++.+.. ..+.++++|+++.+..
T Consensus 339 F------~~c~~L~~i~lp~--~l~~I~~-~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 339 F------RGCTSLSNINFPL--SLRKIGA-NAFQGCINLKKVELPK 375 (394)
T ss_dssp T------TTCTTCCEECCCT--TCCEECT-TTBTTCTTCCEEEEEG
T ss_pred c------cCCCCCCEEEECc--cccEehH-HHhhCCCCCCEEEECC
Confidence 2 3566777777743 3565533 3456778888888754
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.12 E-value=1.1e-06 Score=92.62 Aligned_cols=159 Identities=17% Similarity=0.167 Sum_probs=83.2
Q ss_pred CCCcceeEeeccCccc--------cCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC--ccccc
Q 003193 230 GFLKLKLFLFFTENLS--------LQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--VAIIG 299 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~--------~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~--~~~i~ 299 (840)
.+++|+.|.+...... ..-...++..+++|+.|+++++.-..++. + .+++|+.|++..|.+.. ...++
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence 3567777766443210 00122445667778888887763234444 3 36778888877776654 33343
Q ss_pred --CCCCCCEEeecCC--C------CcccChhh--cCCCCCCEEEccCCCCCCccCccc--ccCCCCCcEEEccCCcccce
Q 003193 300 --DLKKLEILSLKHS--S------IEQLPREI--GQLTCLKLLDLSNCSKLKEIRPNV--ISNLTRLEELYMGNSFTQWK 365 (840)
Q Consensus 300 --~L~~L~~L~l~~~--~------l~~lp~~i--~~L~~L~~L~L~~~~~l~~~p~~~--l~~L~~L~~L~l~~~~~~~~ 365 (840)
.+++|++|+|+.+ . +..+...+ ..+++|++|++.+|......+... ...+++|++|+++.|.+...
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence 6777777777421 1 22222222 246777777777643222111111 12466777777776654321
Q ss_pred ecCCCCCCcccccCCCCCCeEEEecCCC
Q 003193 366 VEGQSNASLGELKQLSRLTTLEVHIPDA 393 (840)
Q Consensus 366 ~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 393 (840)
.. ......+..+++|+.|+++.|.+
T Consensus 295 G~---~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 295 GA---RLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp HH---HHHHTTHHHHTTCSEEECCSBBC
T ss_pred HH---HHHHhhcccCCcceEEECCCCcC
Confidence 00 01112234556777777766543
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.97 E-value=3.8e-06 Score=79.70 Aligned_cols=109 Identities=15% Similarity=0.125 Sum_probs=64.4
Q ss_pred hcCCCCCcEEEcCCC-CCCC-----CChhhcCCCCCCEEEccCCccCC--c----ccccCCCCCCEEeecCCCCcc----
Q 003193 253 FEGMTELRVLDLTGF-RFHS-----LPSSLGCLINLRTLSLENCLVVD--V----AIIGDLKKLEILSLKHSSIEQ---- 316 (840)
Q Consensus 253 ~~~l~~Lr~L~l~~~-~~~~-----lp~~l~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~~---- 316 (840)
+...+.|++|++++| .+.. +...+...++|++|+|++|.+.+ . ..+...++|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 455667777777777 6642 34455666777777777777665 1 234445667777777776662
Q ss_pred -cChhhcCCCCCCEEEc--cCCCCCCccCc----ccccCCCCCcEEEccCCcc
Q 003193 317 -LPREIGQLTCLKLLDL--SNCSKLKEIRP----NVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 317 -lp~~i~~L~~L~~L~L--~~~~~l~~~p~----~~l~~L~~L~~L~l~~~~~ 362 (840)
+...+...++|++|++ ++ +.++.-.. ..+...++|++|++++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4555666667777777 44 34443110 1134446666666666643
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.78 E-value=2.6e-05 Score=77.76 Aligned_cols=78 Identities=28% Similarity=0.268 Sum_probs=55.3
Q ss_pred cCCCCCcEEEcCCCCCCCC---ChhhcCCCCCCEEEccCCccCCcccccCCC--CCCEEeecCCCCcc-cC-------hh
Q 003193 254 EGMTELRVLDLTGFRFHSL---PSSLGCLINLRTLSLENCLVVDVAIIGDLK--KLEILSLKHSSIEQ-LP-------RE 320 (840)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~~l---p~~l~~l~~L~~L~L~~~~~~~~~~i~~L~--~L~~L~l~~~~l~~-lp-------~~ 320 (840)
.++++|++|+|++|.++.+ |..+..+++|++|+|++|.+.....+..+. +|++|++++|.+.. +| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4677888888888888764 456678888888888888887755455555 78888888887752 33 22
Q ss_pred hcCCCCCCEEE
Q 003193 321 IGQLTCLKLLD 331 (840)
Q Consensus 321 i~~L~~L~~L~ 331 (840)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 55667777665
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.78 E-value=1.1e-05 Score=85.11 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=83.6
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCC-CChhhc--CCCCCCEEEccCC--c-cCC--c----cc
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHS-LPSSLG--CLINLRTLSLENC--L-VVD--V----AI 297 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~l~--~l~~L~~L~L~~~--~-~~~--~----~~ 297 (840)
.+|+|+.|.+.++... .++. + .+++|+.|++..+.+.. ....+. .+++|++|+|+.+ . ... . ..
T Consensus 170 ~~P~L~~L~L~g~~~l-~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-SIGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp TCTTCCEEEEECCBTC-BCCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred cCCCCcEEEEeCCCCc-eecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 5788999999876322 3343 2 37889999998877652 112333 7889999998632 1 111 1 11
Q ss_pred c--cCCCCCCEEeecCCCCcc-cChhh---cCCCCCCEEEccCCCCCCc-----cCcccccCCCCCcEEEccCCccc
Q 003193 298 I--GDLKKLEILSLKHSSIEQ-LPREI---GQLTCLKLLDLSNCSKLKE-----IRPNVISNLTRLEELYMGNSFTQ 363 (840)
Q Consensus 298 i--~~L~~L~~L~l~~~~l~~-lp~~i---~~L~~L~~L~L~~~~~l~~-----~p~~~l~~L~~L~~L~l~~~~~~ 363 (840)
+ +.+++|++|++.+|.+.. .+..+ ..+++|++|+|+. +.++. ++.+ +.++++|+.|++++|.+.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~-L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDH-VDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTT-HHHHTTCSEEECCSBBCC
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhh-cccCCcceEEECCCCcCC
Confidence 2 357899999999887762 22222 3578999999987 55655 2222 356789999999988654
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.74 E-value=1.5e-05 Score=75.45 Aligned_cols=105 Identities=14% Similarity=0.141 Sum_probs=72.5
Q ss_pred CCcceeEeeccC-ccccC---CCchhhcCCCCCcEEEcCCCCCCC-----CChhhcCCCCCCEEEccCCccCC------c
Q 003193 231 FLKLKLFLFFTE-NLSLQ---IPDPFFEGMTELRVLDLTGFRFHS-----LPSSLGCLINLRTLSLENCLVVD------V 295 (840)
Q Consensus 231 ~~~L~~L~l~~~-~~~~~---~~~~~~~~l~~Lr~L~l~~~~~~~-----lp~~l~~l~~L~~L~L~~~~~~~------~ 295 (840)
.+.|++|++++| .+... .....+...++|++|+|++|.+.. +...+...++|++|+|++|.+.+ .
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 455555555555 43211 011223566788888888888763 45566677889999999998876 2
Q ss_pred ccccCCCCCCEEee--cCCCCcc-----cChhhcCCCCCCEEEccCC
Q 003193 296 AIIGDLKKLEILSL--KHSSIEQ-----LPREIGQLTCLKLLDLSNC 335 (840)
Q Consensus 296 ~~i~~L~~L~~L~l--~~~~l~~-----lp~~i~~L~~L~~L~L~~~ 335 (840)
..+...++|++|++ ++|.+.. +...+...++|++|++++|
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 45667788999999 7788773 5566677789999999884
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.58 E-value=1.1e-05 Score=80.39 Aligned_cols=79 Identities=23% Similarity=0.291 Sum_probs=49.9
Q ss_pred cCCCCCCEEEccCCccCCc----ccccCCCCCCEEeecCCCCcccChhhcCCC--CCCEEEccCCCCCCccCc------c
Q 003193 277 GCLINLRTLSLENCLVVDV----AIIGDLKKLEILSLKHSSIEQLPREIGQLT--CLKLLDLSNCSKLKEIRP------N 344 (840)
Q Consensus 277 ~~l~~L~~L~L~~~~~~~~----~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~--~L~~L~L~~~~~l~~~p~------~ 344 (840)
.++++|++|+|++|.+... ..++.+++|++|+|++|.++.+ ..+..+. +|++|++++|.--..+|. .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4677888888888887762 3445777888888888777766 2344444 777777777432233331 2
Q ss_pred cccCCCCCcEEE
Q 003193 345 VISNLTRLEELY 356 (840)
Q Consensus 345 ~l~~L~~L~~L~ 356 (840)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245566666665
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.50 E-value=0.0037 Score=67.04 Aligned_cols=120 Identities=11% Similarity=0.181 Sum_probs=65.3
Q ss_pred cceeEeeccCccccCCCchhhcCCCCCcEEEcCCCC---CCCCC-hhhcCCCCCCEEEccCCccCC--cccccCCCCCCE
Q 003193 233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR---FHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEI 306 (840)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~~~lp-~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~ 306 (840)
.|+.+.+..+ ...+....|.++.+|+.+.+..+. ++.++ .+|.++.+|+.+.+..+ +.. ...+..+.+|+.
T Consensus 65 ~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence 3556655432 224555556667777777666542 33332 34556666666655443 222 345566677777
Q ss_pred EeecCCCCcccC-hhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccC
Q 003193 307 LSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359 (840)
Q Consensus 307 L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~ 359 (840)
+.+..+ ++.++ ..+..+.+|+.+.+.. .+..+....+.. .+|+.+.+..
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~-~~l~~i~ip~ 191 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTG-TALTQIHIPA 191 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT-CCCSEEEECT
T ss_pred ccccce-eeeecccceecccccccccccc--eeeEeccccccc-cceeEEEECC
Confidence 777543 34443 2355666777777654 355555554433 4566666544
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.26 E-value=0.023 Score=60.79 Aligned_cols=110 Identities=11% Similarity=0.161 Sum_probs=71.5
Q ss_pred CCCchhhcCCC-CCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCc---cCC--cccccCCCCCCEEeecCCCCcccCh
Q 003193 247 QIPDPFFEGMT-ELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL---VVD--VAIIGDLKKLEILSLKHSSIEQLPR 319 (840)
Q Consensus 247 ~~~~~~~~~l~-~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~---~~~--~~~i~~L~~L~~L~l~~~~l~~lp~ 319 (840)
.+.+..|.+++ .|+.+.+..+ ++.+ ..+|.++.+|+.+.+..+. ++. ...|..+.+|+.+.+..+ ++.++.
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 34555566664 4777777653 5555 3457778888888887653 333 345667777777776553 555543
Q ss_pred -hhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCC
Q 003193 320 -EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS 360 (840)
Q Consensus 320 -~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~ 360 (840)
.+..+.+|+.+.+.. .+..++...+..+.+|+.+.+..+
T Consensus 131 ~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhcccccccccc--eeeeecccceecccccccccccce
Confidence 356777888888764 456666666777888888877654
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.40 E-value=0.14 Score=54.22 Aligned_cols=122 Identities=9% Similarity=0.088 Sum_probs=67.0
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-hhhcCCCCCCEEEccCCccCC--cccccCCCCCCE
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEI 306 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~ 306 (840)
...+|+.+.+... ...+++..|.++.+|+.+++..+ ++.++ .+|.++ .|+.+.+..+ +.. ...+.. .+|+.
T Consensus 44 ~~~~i~~v~ip~~--vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~ 117 (379)
T 4h09_A 44 DRDRISEVRVNSG--ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDD 117 (379)
T ss_dssp GGGGCSEEEECTT--EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSE
T ss_pred cccCCEEEEeCCC--ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCccc
Confidence 3456666666432 22466666777888888887643 55553 335554 5666665432 222 222333 36777
Q ss_pred EeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCC
Q 003193 307 LSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS 360 (840)
Q Consensus 307 L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~ 360 (840)
+.+..+ ++.+....-.-.+|....+.. .+..+....+....+++...+...
T Consensus 118 i~lp~~-~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 118 FEFPGA-TTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp EECCTT-CCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECTT
T ss_pred ccCCCc-cccccccccccceeeeeeccc--eeeccccchhcccccccccccccc
Confidence 777653 444443332333566665543 455555555667777777766543
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.29 E-value=0.087 Score=55.86 Aligned_cols=103 Identities=15% Similarity=0.252 Sum_probs=53.1
Q ss_pred hcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcccCh-hhcCCCCCC
Q 003193 253 FEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLK 328 (840)
Q Consensus 253 ~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~ 328 (840)
+.....|+.+.+..+ +..+ ...+.++..|+.+.+..+ ++. ...+.++.+|+.+.+.. +++.++. .+..+++|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccc
Confidence 344555555555433 2222 233455556666665443 222 34455556666666543 2444442 345566666
Q ss_pred EEEccCCCCCCccCcccccCCCCCcEEEccC
Q 003193 329 LLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359 (840)
Q Consensus 329 ~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~ 359 (840)
.+.+.+ +.++.++...|.++.+|+.+.+..
T Consensus 290 ~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 290 KVVMDN-SAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp EEEECC-TTCCEECTTTTTTCTTCCEEECCT
T ss_pred cccccc-cccceehhhhhcCCCCCCEEEcCc
Confidence 666654 445555555566666666666543
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.81 E-value=0.041 Score=47.94 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=40.3
Q ss_pred EEeecCCCCc--ccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcc
Q 003193 306 ILSLKHSSIE--QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 306 ~L~l~~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 362 (840)
.++-++++++ .+|..+. .+|++|+|++ |.+..+|.+.+..+++|++|++.+|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 5666777777 7775432 4688888888 678888887778888888888887754
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.69 E-value=0.047 Score=47.58 Aligned_cols=14 Identities=36% Similarity=0.354 Sum_probs=6.0
Q ss_pred CcEEEcCCCCCCCC
Q 003193 259 LRVLDLTGFRFHSL 272 (840)
Q Consensus 259 Lr~L~l~~~~~~~l 272 (840)
|++|+|++|.++.+
T Consensus 33 l~~L~Ls~N~l~~l 46 (130)
T 3rfe_A 33 TTELVLTGNNLTAL 46 (130)
T ss_dssp CSEEECTTSCCSSC
T ss_pred CCEEECCCCcCCcc
Confidence 44444444444444
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.10 E-value=0.036 Score=51.87 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=45.1
Q ss_pred cCCCCCcEEEcCCC-CCC-----CCChhhcCCCCCCEEEccCCccCC--cc----cccCCCCCCEEeecCCCCc-----c
Q 003193 254 EGMTELRVLDLTGF-RFH-----SLPSSLGCLINLRTLSLENCLVVD--VA----IIGDLKKLEILSLKHSSIE-----Q 316 (840)
Q Consensus 254 ~~l~~Lr~L~l~~~-~~~-----~lp~~l~~l~~L~~L~L~~~~~~~--~~----~i~~L~~L~~L~l~~~~l~-----~ 316 (840)
.+-+.|+.|+|+++ .+. .+-+.+..-.+|+.|+|++|.+.+ .. .+..=+.|++|+|++|.|. .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34456666777664 543 133445555667777777776665 12 2223455666666666665 2
Q ss_pred cChhhcCCCCCCEEEccC
Q 003193 317 LPREIGQLTCLKLLDLSN 334 (840)
Q Consensus 317 lp~~i~~L~~L~~L~L~~ 334 (840)
+-..+..=+.|++|+|++
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 333344445566666664
No 168
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.25 E-value=0.69 Score=49.36 Aligned_cols=151 Identities=13% Similarity=0.023 Sum_probs=86.8
Q ss_pred EEccCCCHHHHHHHHHHHh---CCCCCCCchhhHHHHHHHHhC------CCchhHHHHHHHh---c---CC---CHHHHH
Q 003193 10 FLDWLLSNEEASHLFEKIV---GHSAKKSDFETIGVEIVAKCG------GLPIAIKTIANAL---K---NK---SPRIWK 71 (840)
Q Consensus 10 ~~l~~L~~~~s~~Lf~~~a---~~~~~~~~~~~i~~~i~~~c~------GlPLai~~~g~~L---~---~~---~~~~W~ 71 (840)
+++++++.+|++++|...+ |.... --.+..+.|+++|+ |.|..+..+.... + +. +.+.+.
T Consensus 210 i~l~~l~~~e~~~ll~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~ 287 (412)
T 1w5s_A 210 LHLPAYKSRELYTILEQRAELGLRDTV--WEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVR 287 (412)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHBCTTS--CCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHhcCCCCC--CChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 8999999999999997653 43211 11467888999999 9997665554322 1 11 445555
Q ss_pred HHHHHhhcCCCCCcccccccccceeecccccCchhhhhHHHhccCCC--CCCccCHHHHHHHHhhc--cccc-ccchHHH
Q 003193 72 DAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLK--DGSRIAVDDLLRYVMGL--RLLT-NADTLEA 146 (840)
Q Consensus 72 ~~l~~l~~~~~~~~~~~~~~~~~l~lSY~~L~~~~lk~cfl~~~~fp--~~~~i~~~~li~~wia~--gfi~-~~~~~~~ 146 (840)
.++..... ...+.-+++.||.+ .+.++..++.+. .+..+...++...+... .... ..-+
T Consensus 288 ~~~~~~~~------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 351 (412)
T 1w5s_A 288 KAVSENEA------------ASIQTHELEALSIH-ELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRG--- 351 (412)
T ss_dssp HHHHHC------------------CCSSSSSCHH-HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCC---
T ss_pred HHHHHHhc------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCC---
Confidence 55553210 12255578889987 888888888654 23356666665544211 1111 0001
Q ss_pred HHHHHHHHHHHHhhccccccC----CCCCceEeehhH
Q 003193 147 ARNRVHTLIDNLKSASLLFDG----DSEDHAKMHRII 179 (840)
Q Consensus 147 ~~~~~~~~~~~L~~~~l~~~~----~~~~~~~mhdli 179 (840)
...+.+++++|.+.+++... ++.+.+++|++.
T Consensus 352 -~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 352 -YTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp -HHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred -HHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 12234578999999998643 234456666655
No 169
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.94 E-value=0.12 Score=48.33 Aligned_cols=81 Identities=11% Similarity=0.073 Sum_probs=53.7
Q ss_pred cCCCCCcEEEcCCCCCC-----CCChhhcCCCCCCEEEccCCccCC--c----ccccCCCCCCEEeecCCCC---c----
Q 003193 254 EGMTELRVLDLTGFRFH-----SLPSSLGCLINLRTLSLENCLVVD--V----AIIGDLKKLEILSLKHSSI---E---- 315 (840)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~-----~lp~~l~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l---~---- 315 (840)
..-..|+.|+|++|.+. .+-+.+..-+.|++|+|++|.+.. . ..+..=+.|++|+|+++.. .
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~ 146 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE 146 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHH
Confidence 45567888888888876 244556666788888888888876 1 3445556688999876532 2
Q ss_pred -ccChhhcCCCCCCEEEccC
Q 003193 316 -QLPREIGQLTCLKLLDLSN 334 (840)
Q Consensus 316 -~lp~~i~~L~~L~~L~L~~ 334 (840)
.+...+..=+.|+.|+++.
T Consensus 147 ~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 147 MDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp HHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHhCCCcCeEeccC
Confidence 2333445556777777765
No 170
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=89.79 E-value=0.83 Score=47.52 Aligned_cols=146 Identities=11% Similarity=0.081 Sum_probs=84.4
Q ss_pred ceEEccCCCHHHHHHHHHHHhCC-CCCCCchhhHHHHHHHHhCCCchhHHHHHHHhcC-CCHHHHHH-HHHHhhcCCCCC
Q 003193 8 EDFLDWLLSNEEASHLFEKIVGH-SAKKSDFETIGVEIVAKCGGLPIAIKTIANALKN-KSPRIWKD-AVNQLSNSNPRK 84 (840)
Q Consensus 8 ~~~~l~~L~~~~s~~Lf~~~a~~-~~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L~~-~~~~~W~~-~l~~l~~~~~~~ 84 (840)
..+++.+|+.+|+.+++...+.. ....+. . .+|+++|+|.|+++..++..+.. .+...|-. +.+....
T Consensus 202 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---~-~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----- 272 (357)
T 2fna_A 202 STVELKPFSREEAIEFLRRGFQEADIDFKD---Y-EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK----- 272 (357)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHTCCCCC---H-HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-----
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCCCc---H-HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH-----
Confidence 57999999999999999875421 111222 2 88999999999999999988752 34433421 1111000
Q ss_pred cccccccccceeecc--cccCchhhhhHHHhccCCCCCCccCHHHHHHHHh-hccc-ccccchHHHHHHHHHHHHHHHhh
Q 003193 85 IQGMDADLSSIELSY--EFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVM-GLRL-LTNADTLEAARNRVHTLIDNLKS 160 (840)
Q Consensus 85 ~~~~~~~~~~l~lSY--~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~wi-a~gf-i~~~~~~~~~~~~~~~~~~~L~~ 160 (840)
.+...+ -.+.| ..||+. .+..+..+|. +. +...+....- ..|. + +. ..+.++++.|.+
T Consensus 273 --~~~~~l--~~~~~~~~~l~~~-~~~~l~~la~---g~--~~~~l~~~~~~~~g~~~----~~----~~~~~~L~~L~~ 334 (357)
T 2fna_A 273 --LILKEF--ENFLHGREIARKR-YLNIMRTLSK---CG--KWSDVKRALELEEGIEI----SD----SEIYNYLTQLTK 334 (357)
T ss_dssp --HHHHHH--HHHHTTCGGGHHH-HHHHHHHHTT---CB--CHHHHHHHHHHHHCSCC----CH----HHHHHHHHHHHH
T ss_pred --HHHHHH--HHHhhccccccHH-HHHHHHHHHc---CC--CHHHHHHHHHHhcCCCC----CH----HHHHHHHHHHHh
Confidence 000000 01111 157776 8888888887 21 4455543211 1121 1 11 123457899999
Q ss_pred ccccccCCCCCceE-eehhHHHH
Q 003193 161 ASLLFDGDSEDHAK-MHRIIHAI 182 (840)
Q Consensus 161 ~~l~~~~~~~~~~~-mhdli~~l 182 (840)
.+++...+ +.|+ .|.++++.
T Consensus 335 ~gli~~~~--~~y~f~~~~~~~~ 355 (357)
T 2fna_A 335 HSWIIKEG--EKYCPSEPLISLA 355 (357)
T ss_dssp TTSEEESS--SCEEESSHHHHHH
T ss_pred CCCEEecC--CEEEecCHHHHHh
Confidence 99987643 4566 46677654
No 171
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=80.51 E-value=1.9 Score=44.03 Aligned_cols=69 Identities=12% Similarity=-0.039 Sum_probs=47.8
Q ss_pred CceEEccCCCHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHhCCCchhHHHHHHHhc-------C-C-CHHHHHHHHHH
Q 003193 7 SEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALK-------N-K-SPRIWKDAVNQ 76 (840)
Q Consensus 7 ~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L~-------~-~-~~~~W~~~l~~ 76 (840)
...+.+.+++.+|..+++.+.+......- -.+..+.+++++.|.|-.+..+...+. . . +.+....++..
T Consensus 160 ~~~i~l~~~~~~e~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 237 (324)
T 1hqc_A 160 GIVEHLEYYTPEELAQGVMRDARLLGVRI-TEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA 237 (324)
T ss_dssp SCEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH
T ss_pred cEEEecCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 35799999999999999988774221111 146778899999999988877665542 1 1 45555555554
No 172
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=76.61 E-value=3.7 Score=42.31 Aligned_cols=148 Identities=13% Similarity=0.104 Sum_probs=84.0
Q ss_pred ceEEccCCCHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHhCCCchhHHHHHHHhcC-CCHHHHH-HHHHHhhcCCCCCc
Q 003193 8 EDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKN-KSPRIWK-DAVNQLSNSNPRKI 85 (840)
Q Consensus 8 ~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L~~-~~~~~W~-~~l~~l~~~~~~~~ 85 (840)
..+++.+|+.+|+.+++.+.+.......+ .+...+|+..++|.|+++..++..+.. .+...|- .+.+....
T Consensus 196 ~~i~l~pl~~~e~~~~l~~~~~~~~~~~~-~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------ 268 (350)
T 2qen_A 196 GEVLVKPFDKDTSVEFLKRGFREVNLDVP-ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKG------ 268 (350)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCC-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH------
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHH------
Confidence 47999999999999999875421111111 457789999999999999999876542 2332221 11111000
Q ss_pred ccccccccceeecccccCchhhhhHHHhccCCCCCCccCHHHHHHHHhh-cccccccchHHHHHHHHHHHHHHHhhcccc
Q 003193 86 QGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMG-LRLLTNADTLEAARNRVHTLIDNLKSASLL 164 (840)
Q Consensus 86 ~~~~~~~~~l~lSY~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~wia-~gfi~~~~~~~~~~~~~~~~~~~L~~~~l~ 164 (840)
.+...+ -.+.+ . ++. .+..+..+|. + ..+...+.....+ .|-+ +. ..+..+++.|.+.+++
T Consensus 269 -~~~~~l--~~l~~-~-~~~-~~~~l~~la~---g-~~~~~~l~~~~~~~~~~~----~~----~~~~~~l~~L~~~gli 330 (350)
T 2qen_A 269 -LIMGEL--EELRR-R-SPR-YVDILRAIAL---G-YNRWSLIRDYLAVKGTKI----PE----PRLYALLENLKKMNWI 330 (350)
T ss_dssp -HHHHHH--HHHHH-H-CHH-HHHHHHHHHT---T-CCSHHHHHHHHHHTTCCC----CH----HHHHHHHHHHHHTTSE
T ss_pred -HHHHHH--HHHHh-C-Chh-HHHHHHHHHh---C-CCCHHHHHHHHHHHhCCC----CH----HHHHHHHHHHHhCCCE
Confidence 000001 11112 2 555 8888888887 2 2455566554321 1101 11 1234578999999998
Q ss_pred ccCCCCCceEe-ehhHHHH
Q 003193 165 FDGDSEDHAKM-HRIIHAI 182 (840)
Q Consensus 165 ~~~~~~~~~~m-hdli~~l 182 (840)
...+ +.|.+ |.++++.
T Consensus 331 ~~~~--~~y~~~~p~~~~~ 347 (350)
T 2qen_A 331 VEED--NTYKIADPVVATV 347 (350)
T ss_dssp EEET--TEEEESSHHHHHH
T ss_pred EecC--CEEEEecHHHHHH
Confidence 7642 44555 5566554
No 173
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=64.90 E-value=8.2 Score=36.92 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=41.5
Q ss_pred ceEEccCCCHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHhCCCchhHHHHHHHh
Q 003193 8 EDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANAL 62 (840)
Q Consensus 8 ~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L 62 (840)
..+++++++++|.++++.+.+......-+ .+..+.|+++|+|.|..+..+...+
T Consensus 178 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 178 LQFHLKALDVEQIRHQLEHILNEEHIAHE-PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTTCCBC-HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 47899999999999999987752211111 4667899999999999998876544
No 174
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=44.31 E-value=88 Score=32.15 Aligned_cols=134 Identities=11% Similarity=0.005 Sum_probs=76.4
Q ss_pred eEEccCCCHHHHHHHHHHHh---CC-CCCCCchhhHHHHHHHHhC---CCch-hHHHHHHHh--c---CC-CHHHHHHHH
Q 003193 9 DFLDWLLSNEEASHLFEKIV---GH-SAKKSDFETIGVEIVAKCG---GLPI-AIKTIANAL--K---NK-SPRIWKDAV 74 (840)
Q Consensus 9 ~~~l~~L~~~~s~~Lf~~~a---~~-~~~~~~~~~i~~~i~~~c~---GlPL-ai~~~g~~L--~---~~-~~~~W~~~l 74 (840)
.+++++++.++..++|.+.+ |. .... .+..+.|+++|+ |-|- |+..+-... + .. +.++++.++
T Consensus 191 ~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~ 267 (384)
T 2qby_B 191 SVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAI 267 (384)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHH
T ss_pred eEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHH
Confidence 89999999999999999874 42 2222 355677888887 8776 444443333 2 22 788888888
Q ss_pred HHhhcCCCCCcccccccccceeecccccCchhhhhHHHhccCCCCCCccCHHHHHHHHhhcccccccchHHHHHHHHHHH
Q 003193 75 NQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTL 154 (840)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~l~lSY~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~wia~gfi~~~~~~~~~~~~~~~~ 154 (840)
+.... ..+.-+++.|+.+ .|..+...+....+-++. +.....--..| .... + ...+.++
T Consensus 268 ~~~~~-------------~~~~~~~~~l~~~-~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~~-~----~~~~~~~ 326 (384)
T 2qby_B 268 VDYEQ-------------ERLIEAVKALPFH-YKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKPL-S----YRRFSDI 326 (384)
T ss_dssp HHHHH-------------HHHHHHHHSSCHH-HHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCCC-C----HHHHHHH
T ss_pred HHHhc-------------chHHHHHHcCCHH-HHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCCC-C----HHHHHHH
Confidence 76432 2244567788875 555555455411100110 11111111222 1111 1 1234568
Q ss_pred HHHHhhcccccc
Q 003193 155 IDNLKSASLLFD 166 (840)
Q Consensus 155 ~~~L~~~~l~~~ 166 (840)
++.|..++++..
T Consensus 327 l~~L~~~gli~~ 338 (384)
T 2qby_B 327 ISELDMFGIVKI 338 (384)
T ss_dssp HHHHHHTTSEEE
T ss_pred HHHHHhCCCEEE
Confidence 889999999864
No 175
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=40.09 E-value=86 Score=32.15 Aligned_cols=136 Identities=12% Similarity=0.067 Sum_probs=79.4
Q ss_pred ceEEccCCCHHHHHHHHHHHh---CC-CCCCCchhhHHHHHHHHhC---CCc-hhHHHHHHHhc-------CC-CHHHHH
Q 003193 8 EDFLDWLLSNEEASHLFEKIV---GH-SAKKSDFETIGVEIVAKCG---GLP-IAIKTIANALK-------NK-SPRIWK 71 (840)
Q Consensus 8 ~~~~l~~L~~~~s~~Lf~~~a---~~-~~~~~~~~~i~~~i~~~c~---GlP-Lai~~~g~~L~-------~~-~~~~W~ 71 (840)
..+.+++++.++..+++.+.+ +. .... .+..+.++++++ |.| .|+.++..+.. .. +.+.++
T Consensus 194 ~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~ 270 (387)
T 2v1u_A 194 VELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVY 270 (387)
T ss_dssp EECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHH
T ss_pred eEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 478999999999999999874 32 2222 345677888887 999 44444333321 22 778888
Q ss_pred HHHHHhhcCCCCCcccccccccceeecccccCchhhhhHHHhcc-CCCCCCccCHHHHHHHH----hhcccccccchHHH
Q 003193 72 DAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCG-LLKDGSRIAVDDLLRYV----MGLRLLTNADTLEA 146 (840)
Q Consensus 72 ~~l~~l~~~~~~~~~~~~~~~~~l~lSY~~L~~~~lk~cfl~~~-~fp~~~~i~~~~li~~w----ia~gfi~~~~~~~~ 146 (840)
.+++.... ..+.-++..||.+ .+..+...+ ++-.+-.+...++.+.. -..| ....
T Consensus 271 ~a~~~~~~-------------~~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----- 330 (387)
T 2v1u_A 271 SARAEIER-------------DRVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-LEHV----- 330 (387)
T ss_dssp HHHHHHHH-------------HHHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CCCC-----
T ss_pred HHHHHHhh-------------chHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CCCC-----
Confidence 88776422 1234467788876 555555444 33222245555444332 1122 1111
Q ss_pred HHHHHHHHHHHHhhcccccc
Q 003193 147 ARNRVHTLIDNLKSASLLFD 166 (840)
Q Consensus 147 ~~~~~~~~~~~L~~~~l~~~ 166 (840)
....+.+++++|...+++..
T Consensus 331 ~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 331 TLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp CHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHhCCCeEE
Confidence 12345568888999998864
No 176
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=23.08 E-value=36 Score=18.93 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=15.1
Q ss_pred HhCCCchhHHHHHHHhcCC
Q 003193 47 KCGGLPIAIKTIANALKNK 65 (840)
Q Consensus 47 ~c~GlPLai~~~g~~L~~~ 65 (840)
|-.-+|||..+.++.++.+
T Consensus 7 krrklplavav~agv~~aq 25 (28)
T 2vda_B 7 KRRKLPLAVAVAAGVMSAQ 25 (28)
T ss_dssp CCCCCTHHHHHHHHTTCCC
T ss_pred ccccCchHHHHHHHHhHhh
Confidence 4457999999999988643
No 177
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=21.52 E-value=98 Score=28.40 Aligned_cols=53 Identities=13% Similarity=-0.066 Sum_probs=38.4
Q ss_pred eEEccCCCHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHhCCCchhHHHHHHHh
Q 003193 9 DFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANAL 62 (840)
Q Consensus 9 ~~~l~~L~~~~s~~Lf~~~a~~~~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L 62 (840)
.+++++++.+|..+++.+.+...... --.+..+.+++.++|.|..+..+...+
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQGA 207 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 78999999999999999877421111 114567889999999999766554443
Done!