Query 003194
Match_columns 840
No_of_seqs 507 out of 2801
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 18:51:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00653 GlnA glutamine synth 100.0 2E-103 5E-108 891.9 43.7 420 400-835 5-455 (460)
2 COG0174 GlnA Glutamine synthet 100.0 1E-101 3E-106 861.4 41.6 419 399-835 6-437 (443)
3 TIGR03105 gln_synth_III glutam 100.0 7E-101 2E-105 867.3 43.5 409 404-835 6-430 (435)
4 PRK09469 glnA glutamine synthe 100.0 7E-101 2E-105 872.6 43.8 417 401-835 9-463 (469)
5 PLN02284 glutamine synthetase 100.0 3.7E-73 8E-78 625.7 30.8 321 408-761 21-353 (354)
6 PF00120 Gln-synt_C: Glutamine 100.0 1.9E-70 4.2E-75 584.4 17.6 251 503-759 1-259 (259)
7 PLN03036 glutamine synthetase; 100.0 1.5E-68 3.2E-73 595.2 30.5 322 409-760 79-412 (432)
8 PRK02925 glucuronate isomerase 100.0 1.6E-51 3.4E-56 453.4 28.8 360 5-380 18-465 (466)
9 COG1904 UxaC Glucuronate isome 100.0 3.7E-48 8.1E-53 413.4 25.6 359 5-379 17-462 (463)
10 PF02614 UxaC: Glucuronate iso 100.0 1.1E-45 2.4E-50 415.2 18.2 359 4-378 16-462 (462)
11 KOG0683 Glutamine synthetase [ 100.0 1.7E-35 3.7E-40 310.6 13.8 339 401-795 22-372 (380)
12 COG2159 Predicted metal-depend 99.9 1.9E-24 4.1E-29 233.7 19.6 196 153-382 87-292 (293)
13 COG3968 Uncharacterized protei 99.8 2E-18 4.4E-23 184.5 19.6 233 523-767 214-508 (724)
14 PF04909 Amidohydro_2: Amidohy 99.8 4.3E-19 9.3E-24 190.1 8.6 202 153-380 59-273 (273)
15 cd01311 PDC_hydrolase 2-pyrone 99.4 1.2E-12 2.7E-17 140.4 15.3 140 212-377 108-263 (263)
16 PF03951 Gln-synt_N: Glutamine 99.4 3.5E-13 7.5E-18 118.4 5.8 80 407-497 1-84 (84)
17 COG3618 Predicted metal-depend 99.2 6.9E-10 1.5E-14 116.4 18.3 147 209-380 119-278 (279)
18 cd01310 TatD_DNAse TatD like p 99.0 2.5E-09 5.3E-14 113.5 11.3 147 210-379 104-251 (251)
19 KOG4245 Predicted metal-depend 98.8 1E-08 2.2E-13 100.4 8.8 199 154-383 55-290 (297)
20 TIGR00010 hydrolase, TatD fami 98.5 3.4E-07 7.4E-12 97.2 10.9 143 212-380 106-252 (252)
21 TIGR02050 gshA_cyan_rel unchar 98.3 1.1E-05 2.3E-10 87.8 16.1 198 526-770 1-260 (287)
22 PRK13517 carboxylate-amine lig 98.1 3.4E-05 7.4E-10 87.1 14.9 132 524-694 10-168 (373)
23 PRK13515 carboxylate-amine lig 98.0 6.5E-05 1.4E-09 84.8 14.4 190 524-765 5-259 (371)
24 PRK13516 gamma-glutamyl:cystei 97.9 8.3E-05 1.8E-09 83.5 12.1 131 524-693 11-168 (373)
25 COG0418 PyrC Dihydroorotase [N 97.7 0.0011 2.4E-08 70.2 16.5 215 145-383 47-306 (344)
26 cd00530 PTE Phosphotriesterase 97.7 0.00042 9.1E-09 75.6 14.3 149 215-378 137-293 (293)
27 PRK10812 putative DNAse; Provi 97.7 0.00022 4.7E-09 76.8 11.6 142 215-382 112-258 (265)
28 PRK11449 putative deoxyribonuc 97.7 0.00023 5.1E-09 76.2 10.8 139 215-380 115-258 (258)
29 PRK13518 carboxylate-amine lig 97.5 0.0011 2.4E-08 73.7 13.2 129 526-693 14-169 (357)
30 COG0084 TatD Mg-dependent DNas 97.4 0.00078 1.7E-08 71.7 10.6 139 215-380 113-256 (256)
31 PF01026 TatD_DNase: TatD rela 97.4 0.00072 1.6E-08 72.4 10.5 139 213-379 110-255 (255)
32 PRK09875 putative hydrolase; P 97.2 0.012 2.7E-07 64.0 17.0 148 218-379 143-292 (292)
33 PRK10425 DNase TatD; Provision 97.1 0.0035 7.7E-08 67.1 11.1 141 215-380 109-258 (258)
34 cd01294 DHOase Dihydroorotase 97.0 0.0062 1.4E-07 67.9 13.1 156 213-381 112-298 (335)
35 PLN02611 glutamate--cysteine l 96.9 0.0028 6.1E-08 73.0 9.2 44 584-628 123-167 (482)
36 COG1099 Predicted metal-depend 96.9 0.076 1.6E-06 54.3 17.6 143 212-381 112-254 (254)
37 COG2170 Uncharacterized conser 96.8 0.0035 7.7E-08 67.8 8.0 155 587-765 43-257 (369)
38 PRK05451 dihydroorotase; Provi 96.3 0.054 1.2E-06 60.7 14.0 79 212-295 116-199 (345)
39 TIGR02048 gshA_cyano glutamate 96.3 0.017 3.7E-07 65.1 9.6 94 584-694 31-151 (376)
40 PF04107 GCS2: Glutamate-cyste 96.1 0.0047 1E-07 67.3 4.0 96 582-693 34-159 (288)
41 PF02126 PTE: Phosphotriestera 96.0 0.045 9.8E-07 60.1 11.2 151 216-378 144-307 (308)
42 PLN02599 dihydroorotase 96.0 0.094 2E-06 59.0 13.5 158 213-381 135-323 (364)
43 cd01292 metallo-dependent_hydr 95.4 0.092 2E-06 55.3 10.5 105 212-328 131-237 (275)
44 KOG3020 TatD-related DNase [Re 95.4 0.32 7E-06 52.6 14.3 95 215-328 136-231 (296)
45 TIGR00856 pyrC_dimer dihydroor 95.1 0.36 7.9E-06 54.0 14.3 79 212-294 113-195 (341)
46 TIGR01436 glu_cys_lig_pln glut 94.7 0.3 6.5E-06 56.3 12.5 44 584-628 80-124 (446)
47 KOG2902 Dihydroorotase [Nucleo 94.1 0.2 4.2E-06 51.7 8.2 113 215-331 118-251 (344)
48 COG2355 Zn-dependent dipeptida 93.1 2.3 5E-05 46.6 14.8 137 218-379 153-308 (313)
49 cd01297 D-aminoacylase D-amino 93.1 1.6 3.5E-05 50.1 14.6 150 210-381 195-355 (415)
50 COG1831 Predicted metal-depend 92.8 0.84 1.8E-05 48.2 10.5 133 215-382 146-284 (285)
51 cd01302 Cyclic_amidohydrolases 92.3 2.3 5E-05 47.4 14.2 146 212-381 113-287 (337)
52 PF01244 Peptidase_M19: Membra 92.2 0.72 1.6E-05 51.1 9.8 70 300-379 247-319 (320)
53 cd01301 rDP_like renal dipepti 91.0 3.6 7.9E-05 45.3 13.6 68 301-377 240-309 (309)
54 cd01314 D-HYD D-hydantoinases 89.4 6.5 0.00014 45.6 14.8 161 212-382 160-377 (447)
55 TIGR01975 isoAsp_dipep isoaspa 87.9 4.1 8.9E-05 46.5 11.4 139 227-381 188-344 (389)
56 COG1735 Php Predicted metal-de 87.3 12 0.00026 40.6 13.6 155 210-381 148-315 (316)
57 PRK09357 pyrC dihydroorotase; 85.4 6.7 0.00014 45.1 11.7 159 214-382 159-365 (423)
58 KOG0683 Glutamine synthetase [ 85.1 0.19 4.2E-06 54.9 -1.1 67 694-762 301-369 (380)
59 PLN02795 allantoinase 84.6 18 0.0004 42.7 15.0 163 211-380 209-427 (505)
60 cd01309 Met_dep_hydrolase_C Me 84.1 14 0.0003 41.6 13.2 141 212-383 178-322 (359)
61 PLN02942 dihydropyrimidinase 83.4 21 0.00046 42.0 14.8 164 212-381 165-382 (486)
62 PRK07369 dihydroorotase; Provi 83.4 13 0.00028 42.9 12.8 161 215-381 163-367 (418)
63 cd01307 Met_dep_hydrolase_B Me 83.1 18 0.00038 40.3 13.5 135 217-381 152-297 (338)
64 cd01315 L-HYD_ALN L-Hydantoina 82.2 17 0.00036 42.2 13.2 164 211-381 159-373 (447)
65 TIGR00857 pyrC_multi dihydroor 79.5 20 0.00043 41.2 12.5 162 212-381 145-351 (411)
66 cd01299 Met_dep_hydrolase_A Me 76.6 1.3E+02 0.0027 33.3 17.7 25 211-235 157-181 (342)
67 cd01317 DHOase_IIa Dihydroorot 76.1 37 0.0008 38.3 13.3 33 345-381 293-325 (374)
68 TIGR02967 guan_deamin guanine 74.7 62 0.0014 36.8 14.8 156 212-382 184-344 (401)
69 TIGR03444 gshA_related glutama 74.1 14 0.0003 41.9 8.9 38 590-627 68-106 (390)
70 PRK07583 cytosine deaminase-li 70.8 56 0.0012 37.8 13.4 56 212-271 210-265 (438)
71 PRK08044 allantoinase; Provisi 70.3 54 0.0012 38.2 13.1 34 344-381 342-375 (449)
72 cd04869 ACT_GcvR_2 ACT domains 70.1 9.9 0.00021 32.5 5.3 65 566-632 11-81 (81)
73 TIGR03121 one_C_dehyd_A formyl 69.4 52 0.0011 39.2 12.5 61 317-381 375-450 (556)
74 PRK09059 dihydroorotase; Valid 68.6 54 0.0012 37.9 12.5 162 212-381 164-370 (429)
75 PRK09228 guanine deaminase; Pr 66.4 1E+02 0.0022 35.6 14.3 109 213-327 210-323 (433)
76 cd01303 GDEase Guanine deamina 65.2 1.2E+02 0.0027 34.9 14.6 107 213-327 207-320 (429)
77 PRK08417 dihydroorotase; Provi 65.2 99 0.0021 35.1 13.6 167 211-381 127-335 (386)
78 PRK07213 chlorohydrolase; Prov 65.1 1.7E+02 0.0036 33.1 15.4 147 211-381 176-326 (375)
79 PF06877 RraB: Regulator of ri 65.0 43 0.00093 30.3 8.7 95 506-627 2-98 (104)
80 PRK09061 D-glutamate deacylase 65.0 1.5E+02 0.0032 35.2 15.4 34 342-379 400-434 (509)
81 TIGR02033 D-hydantoinase D-hyd 64.4 1.2E+02 0.0027 34.9 14.6 35 344-382 345-379 (454)
82 TIGR03178 allantoinase allanto 63.7 70 0.0015 37.1 12.2 31 346-380 339-369 (443)
83 PRK08323 phenylhydantoinase; V 63.5 81 0.0018 36.5 12.8 32 346-381 345-376 (459)
84 PRK06189 allantoinase; Provisi 62.9 71 0.0015 37.1 12.1 116 259-381 229-373 (451)
85 PF04273 DUF442: Putative phos 62.5 9.9 0.00022 35.2 4.0 70 167-237 26-96 (110)
86 PF13740 ACT_6: ACT domain; PD 59.4 24 0.00052 30.1 5.6 62 566-630 14-75 (76)
87 PRK10657 isoaspartyl dipeptida 58.1 1.3E+02 0.0029 33.9 13.1 141 229-382 192-344 (388)
88 cd01295 AdeC Adenine deaminase 58.0 1.2E+02 0.0026 34.9 12.8 129 216-380 123-254 (422)
89 PRK02382 dihydroorotase; Provi 57.4 1E+02 0.0022 35.7 12.2 156 214-381 161-361 (443)
90 PRK13404 dihydropyrimidinase; 55.1 1.4E+02 0.0031 35.0 12.9 34 344-381 352-385 (477)
91 cd04872 ACT_1ZPV ACT domain pr 53.3 23 0.00049 31.1 4.6 67 566-633 13-79 (88)
92 PRK02471 bifunctional glutamat 53.3 30 0.00066 42.9 7.2 38 584-621 53-91 (752)
93 cd01304 FMDH_A Formylmethanofu 51.9 1.9E+02 0.004 34.5 12.9 18 364-381 430-447 (541)
94 PRK00194 hypothetical protein; 51.4 25 0.00054 30.8 4.6 66 566-632 15-80 (90)
95 cd01308 Isoaspartyl-dipeptidas 51.4 1.7E+02 0.0036 33.1 12.4 69 305-381 263-342 (387)
96 cd01300 YtcJ_like YtcJ_like me 50.3 75 0.0016 37.1 9.7 68 211-282 292-359 (479)
97 cd04870 ACT_PSP_1 CT domains f 48.7 39 0.00084 28.6 5.2 65 566-632 11-75 (75)
98 PRK08204 hypothetical protein; 48.4 3E+02 0.0065 31.7 14.2 103 214-327 201-303 (449)
99 COG3453 Uncharacterized protei 48.0 42 0.00091 31.5 5.4 70 167-237 27-97 (130)
100 cd00443 ADA_AMPD Adenosine/AMP 46.2 4.3E+02 0.0094 28.9 15.0 93 215-329 154-257 (305)
101 PRK08418 chlorohydrolase; Prov 45.5 2.7E+02 0.0058 31.9 12.9 104 213-327 189-313 (408)
102 cd01316 CAD_DHOase The eukaryo 45.3 1.5E+02 0.0032 33.3 10.5 111 261-381 147-281 (344)
103 KOG0558 Dihydrolipoamide trans 45.0 19 0.00041 39.5 3.1 54 564-633 248-302 (474)
104 PRK08203 hydroxydechloroatrazi 44.3 1.2E+02 0.0026 35.2 10.0 107 213-327 213-323 (451)
105 PRK06151 N-ethylammeline chlor 43.7 1.4E+02 0.003 35.1 10.5 108 211-326 218-338 (488)
106 PRK09045 N-ethylammeline chlor 43.4 2.9E+02 0.0063 31.9 13.0 107 213-327 201-311 (443)
107 PF03102 NeuB: NeuB family; I 42.0 33 0.00072 36.4 4.5 76 205-295 94-180 (241)
108 TIGR03583 EF_0837 probable ami 41.9 1.4E+02 0.0031 33.4 9.9 22 356-381 292-313 (365)
109 PRK15493 5-methylthioadenosine 41.0 1.5E+02 0.0032 34.3 10.0 107 212-326 195-305 (435)
110 cd01305 archeal_chlorohydrolas 40.8 1.9E+02 0.0041 30.7 10.2 98 216-328 127-224 (263)
111 PRK12394 putative metallo-depe 40.6 5.8E+02 0.013 28.7 15.1 140 213-381 172-321 (379)
112 KOG4127 Renal dipeptidase [Pos 39.9 1.5E+02 0.0033 33.1 9.0 135 221-380 239-390 (419)
113 cd01298 ATZ_TRZ_like TRZ/ATZ f 39.2 2.6E+02 0.0057 31.4 11.7 109 212-328 192-304 (411)
114 PRK09237 dihydroorotase; Provi 38.7 5.7E+02 0.012 28.7 14.2 130 221-381 175-316 (380)
115 cd01318 DHOase_IIb Dihydroorot 38.6 2.3E+02 0.0049 32.0 10.8 114 259-381 168-307 (361)
116 COG3964 Predicted amidohydrola 36.5 4.8E+02 0.01 28.7 11.8 171 219-427 177-358 (386)
117 TIGR01244 conserved hypothetic 36.1 76 0.0016 30.3 5.5 19 167-185 26-44 (135)
118 PTZ00372 endonuclease 4-like p 36.0 5.5E+02 0.012 29.6 13.2 112 215-328 219-351 (413)
119 smart00874 B5 tRNA synthetase 35.3 62 0.0013 26.9 4.3 50 569-626 22-71 (71)
120 cd04893 ACT_GcvR_1 ACT domains 34.1 1.1E+02 0.0023 26.1 5.7 63 566-631 13-75 (77)
121 PRK06361 hypothetical protein; 33.6 2.4E+02 0.0052 28.9 9.3 96 265-380 115-210 (212)
122 COG3364 Zn-ribbon containing p 33.6 26 0.00057 31.6 1.7 27 573-600 52-78 (112)
123 PTZ00124 adenosine deaminase; 32.8 1.7E+02 0.0036 33.2 8.4 84 147-236 139-228 (362)
124 PRK06687 chlorohydrolase; Vali 32.3 4.9E+02 0.011 29.7 12.5 107 212-326 194-304 (419)
125 PRK08393 N-ethylammeline chlor 32.1 3.7E+02 0.008 30.8 11.4 108 212-327 187-298 (424)
126 cd01312 Met_dep_hydrolase_D Me 31.3 3.4E+02 0.0073 30.8 10.7 107 214-328 163-291 (381)
127 COG0402 SsnA Cytosine deaminas 29.0 2.2E+02 0.0049 32.6 8.9 124 190-329 170-309 (421)
128 PRK06038 N-ethylammeline chlor 28.6 3.7E+02 0.0081 30.9 10.7 108 212-327 188-299 (430)
129 PRK07228 N-ethylammeline chlor 27.9 8.5E+02 0.018 27.9 13.6 107 213-327 198-308 (445)
130 PRK07203 putative chlorohydrol 27.5 2.1E+02 0.0045 33.1 8.4 107 213-327 204-314 (442)
131 PRK14085 imidazolonepropionase 26.8 8.6E+02 0.019 27.3 13.1 140 211-381 204-344 (382)
132 PRK12393 amidohydrolase; Provi 26.2 7.2E+02 0.016 28.8 12.6 109 211-327 215-327 (457)
133 PRK11589 gcvR glycine cleavage 26.0 1.4E+02 0.0029 30.6 5.6 64 566-635 107-180 (190)
134 TIGR03586 PseI pseudaminic aci 25.6 50 0.0011 36.7 2.6 52 217-276 124-177 (327)
135 cd04882 ACT_Bt0572_2 C-termina 25.6 1.5E+02 0.0033 23.4 5.0 50 567-627 12-63 (65)
136 COG3572 GshA Gamma-glutamylcys 25.3 1.1E+02 0.0024 34.5 5.1 43 587-630 93-136 (456)
137 cd01306 PhnM PhnM is believed 25.1 9.7E+02 0.021 26.6 16.2 44 186-236 142-185 (325)
138 cd01296 Imidazolone-5PH Imidaz 24.6 6.9E+02 0.015 27.7 11.7 24 213-236 192-215 (371)
139 COG0044 PyrC Dihydroorotase an 24.6 1.1E+03 0.025 27.2 13.6 163 210-382 154-363 (430)
140 cd04875 ACT_F4HF-DF N-terminal 24.6 1.7E+02 0.0037 24.4 5.2 60 566-627 11-73 (74)
141 PF04468 PSP1: PSP1 C-terminal 24.3 96 0.0021 27.4 3.7 61 565-630 25-85 (88)
142 PRK05985 cytosine deaminase; P 24.1 1E+03 0.022 26.8 13.0 25 213-237 190-214 (391)
143 cd01313 Met_dep_hydrolase_E Me 23.8 7.2E+02 0.016 28.4 11.9 107 212-327 205-315 (418)
144 TIGR03569 NeuB_NnaB N-acetylne 23.7 49 0.0011 36.8 2.1 70 217-293 123-200 (329)
145 PRK07627 dihydroorotase; Provi 22.8 5.3E+02 0.011 29.7 10.4 83 212-294 159-259 (425)
146 PRK09236 dihydroorotase; Revie 22.2 1.1E+03 0.024 27.1 13.1 27 351-381 342-368 (444)
147 COG3937 Uncharacterized conser 21.2 1.6E+02 0.0035 27.0 4.4 32 340-371 22-53 (108)
148 cd01321 ADGF Adenosine deamina 21.0 2E+02 0.0044 32.2 6.3 85 147-237 105-204 (345)
149 TIGR01224 hutI imidazoloneprop 20.9 1.1E+03 0.023 26.3 12.3 22 215-236 198-219 (377)
150 PRK09358 adenosine deaminase; 20.6 3.6E+02 0.0078 29.9 8.3 24 214-237 182-205 (340)
151 PRK06886 hypothetical protein; 20.0 1.2E+03 0.026 25.9 12.4 51 213-271 161-215 (329)
No 1
>TIGR00653 GlnA glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation.
Probab=100.00 E-value=2.5e-103 Score=891.93 Aligned_cols=420 Identities=30% Similarity=0.467 Sum_probs=377.7
Q ss_pred hhhhccCCccEEEEEEecCCCCcceEEEechhhhhHHhhcccccccccccccccCCCCCCCCCCCCCCcEEEEEecCCce
Q 003194 400 KSDAFESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRW 479 (840)
Q Consensus 400 ~~~~~~~~i~~v~l~~~D~~G~~R~k~vp~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~l~PD~~T~~ 479 (840)
.++. +++|+||+++|+|++|++|+|.||+++|.+...+.|++|+++++. +. +..+.+|++|+||++|++
T Consensus 5 ~~l~-~~~i~~v~~~~~Dl~G~~rgk~vp~~~~~~~~~~~G~~~~~~~~~------~~----~~~~~~D~~l~PD~~Tl~ 73 (460)
T TIGR00653 5 KLIK-EENVKFVDLRFTDIKGKPQHVEIPASALDKEAFEEGIMFDGSSIR------GF----QGIEESDMLLKPDPSTAV 73 (460)
T ss_pred HHHH-hCCCcEEEEEEECCCCCEeeEEEeHHHhhHHHhcCCeeccccccc------cc----ccCCCCcEEEeccCCcce
Confidence 3444 478999999999999999999999999976334688888866541 10 113467999999999999
Q ss_pred eccCCc-cccceeeeccCC-CCCcCCCChHHHHHHHHHHHHHhcCceeeeeeeeEEEEEeecccC---------------
Q 003194 480 RIPWQK-QEEMIMADMHLK-PGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLRE--------------- 542 (840)
Q Consensus 480 ~~Pw~~-~~a~v~~d~~~~-~g~p~~~~PR~~Lkr~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~--------------- 542 (840)
++||.+ ++++|+||+++. ||+|++.|||++|||++++++++.|+++++|+|+|||||+.....
T Consensus 74 ~~pw~~~~~a~v~~d~~~~~dg~p~~~~PR~~L~r~~~~l~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~ 153 (460)
T TIGR00653 74 IDPWRAEKTLRVICDVYEPFTGEPYERDPRSIAKRAEEYLKSGIGDTAYFGPEPEFFLFDSVEFGSLANGSFYEVDSEEG 153 (460)
T ss_pred eccCCCCCcEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHhCCCCceeEEcceEEEEEecCccCcccccceeeeccccc
Confidence 999965 489999999998 999999999999999999998668999999999999999853211
Q ss_pred ------CCCCcccCCCCCcccCCccccchHHHHHHHHHHHhCCCceeeeccCCCCCceEEecCcchHHHHHhHHHHHHHH
Q 003194 543 ------GKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREV 616 (840)
Q Consensus 543 ------~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ 616 (840)
+...+.|.+.++||+....+...+++++|++.|+++||+|+++|+|+|||||||++.|+++|+|||+++++|++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~v~~~~~E~gpGQ~Ei~l~~~~~l~aAD~~~~~k~~ 233 (460)
T TIGR00653 154 RWNEESGNRGYKPRDKGGYFPVAPTDTAVDIRREMVLYLEQLGFDVEVHHHEVATGQHEIDFKFDTLLKTADDIQTYKYV 233 (460)
T ss_pred cccccCCcCCCcccCCccccCCCCcccHHHHHHHHHHHHHHcCCCceeeecCcCCCceeEecCCCCHHHHHHHHHHHHHH
Confidence 11134556666678888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCeeEecccccCCCCCcccccccccccCCCcccccCCCCCcCCCcHHHHHHHHHHHHhHHhhhhhcCCCCCc
Q 003194 617 LRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNS 696 (840)
Q Consensus 617 ik~vA~~~Gl~ATFmpKP~~~~~GsG~H~H~Sl~~~g~n~f~~~d~~~~~~lS~~~~~fiaGlL~h~~al~a~~~Pt~nS 696 (840)
||+||++||+.|||||||+.+.+|||+|+|+|||++|+|+|. |++++.+||+++++||||||+|++++++|++||+||
T Consensus 234 ik~vA~~~G~~ATFmpKP~~~~~GSG~H~H~Sl~d~g~n~F~--d~~~~~~lS~~~~~fiaGiL~h~~~l~a~~~PtvNS 311 (460)
T TIGR00653 234 VKNVARKHGKTATFMPKPLFGDNGSGMHCHQSLWKDGENLFA--GEEGYAGLSETALYYIGGILKHAKALAAFTNPTVNS 311 (460)
T ss_pred HHHHHHHhCCEEEEecccCCCCCcCceeEEECccCCCeeccC--CCCCCcccCHHHHHHHHHHHHHHHHhhhHhcCCCcc
Confidence 999999999999999999999999999999999999999998 555667899999999999999999999999999999
Q ss_pred cccCCCCCccCccccccccCCCCcccccCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHHHHHHhhhc-CCCCCCCCCC
Q 003194 697 YDRIQPNTWSGAYQCWGKENREAPLRTACPPGVKDGVVSNFELKSFDGCANPHLGLAAIIASGIDGLRR-LCLPEPIDAN 775 (840)
Q Consensus 697 Y~Rl~~~~~ap~~~~WG~~NR~~~iRv~~~~~~~~~~~~~~E~R~~d~~aNPYLalAailaAGl~GI~~-l~~~~~~~~~ 775 (840)
||||+|++|||++++||.+||+++||||... ....+|||+|++|++|||||++||+|+||++||++ ++||+|+++|
T Consensus 312 YkRl~p~~~ap~~~~WG~~NR~a~iRvp~~~---~~~~~riE~R~~da~aNPYLalAa~laAGl~Gi~~~l~p~~~~~~~ 388 (460)
T TIGR00653 312 YKRLVPGYEAPVYLAYSARNRSALIRIPASG---NPKAKRIEFRFPDPSANPYLAFAAMLMAGLDGIKNKIDPGEPVDKN 388 (460)
T ss_pred hhhcCCCCcCcceeecccCCCCceEEecCCC---CCcCceEEecCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCcCc
Confidence 9999999999999999999999999998621 12357999999999999999999999999999999 9999999999
Q ss_pred cccccC------CCCCCCcCHHHHHHHHhcC-hHHHhhhcHHHHHHHHHHHHHHHHHHhcCCchHHH
Q 003194 776 PASLDG------KLQRLPTSLSESVQALEKD-DILRDMIGEKLLIAIKGIRKAEINYYSLNKDAYKQ 835 (840)
Q Consensus 776 ~~~~~~------~~~~LP~sl~eAl~~le~d-~~l~~~lG~~~v~~y~~~k~~E~~~~~~~~~~~~~ 835 (840)
++.++. ++++||+||.|||++|++| .+++++||++||+.|+++||.||++|.+.+++|+.
T Consensus 389 ~~~~~~~~~~~~~~~~LP~sL~eAl~~l~~d~~~l~~~lG~~~v~~y~~~K~~E~~~~~~~vt~wE~ 455 (460)
T TIGR00653 389 LYELSPEELREKGIPQLPGSLEEALDELESDHLVEGGVFGEEFIEAFIELKRKEWDPYRLRPHPWEF 455 (460)
T ss_pred cccCCHHHHhhcCCCCCCcCHHHHHHHHHhChHHHhhhcCHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 986531 5778999999999999999 99999999999999999999999999999999987
No 2
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-101 Score=861.38 Aligned_cols=419 Identities=33% Similarity=0.541 Sum_probs=376.4
Q ss_pred hhhhhccCCccEEEEEEecCCCCcceEEEech----hhhhHHhhcccccccccc-cccccCCCCCCCCCCCCCCcEEEEE
Q 003194 399 KKSDAFESDVSLIRVIWVDASGQHRCRVVPVK----RFNDIVTKYGVGLTFACM-GMTSAVDGPADGTNLSGTGEIRLMP 473 (840)
Q Consensus 399 ~~~~~~~~~i~~v~l~~~D~~G~~R~k~vp~~----~~~~~~~~~g~~~~~~~~-~~~~~~d~~~~~~~~~~~~d~~l~P 473 (840)
+..++++++|++|+++|+|+.|++|+|++|++ .+.+. .+.|+.|++++. ++.. -+.+|++|+|
T Consensus 6 ~~~~~~~~~V~~v~~~f~D~~G~~r~k~ip~~~~~~~~~~~-~~~g~~fdgss~~g~~~-----------i~~sDm~l~P 73 (443)
T COG0174 6 VLKLLKENGVKFVDLRFTDLNGVLRGKTIPAEKPVSVLAQL-FEGGVVFDGSSIAGFEG-----------IGESDMVLKP 73 (443)
T ss_pred HHHHHHhCCceEEEEEEECCCCCeeeEEEecccchhHHHhh-hccCcCcCCccccccCC-----------CCCCCEEEee
Confidence 34778899999999999999999999999999 34443 356777776553 2211 1457999999
Q ss_pred ecCCceeccCCcc-ccceeeeccCCCCCcCCCChHHHHHHHHHHHHHhcCce-eeeeeeeEEEEEeecccCCCCCcccCC
Q 003194 474 DLSTRWRIPWQKQ-EEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLV-LNAGFEIEFYLLKSVLREGKEEWVPID 551 (840)
Q Consensus 474 D~~T~~~~Pw~~~-~a~v~~d~~~~~g~p~~~~PR~~Lkr~~~~~~~~~G~~-~~~g~E~EF~l~~~~~~~~~~~~~p~~ 551 (840)
|++|++++||.++ +|+|+||+++++|+|++.|||++|||+++++++ .|+. +.+|+|+|||||+.... +.....|.+
T Consensus 74 d~~T~~~~Pw~~~~ta~v~cdv~~~~g~p~~~dPR~vlkr~~~~l~~-~G~~~~~~g~E~EFfLfd~~~~-~~~~~~~~~ 151 (443)
T COG0174 74 DLSTLVVDPWREGPTARVLCDVYDPDGTPYPRDPRSVLKRALARLKD-EGLAPAVVGPELEFFLFDRDGR-DPDGGRPAD 151 (443)
T ss_pred ccCceeeCCCCCCCcEEEEEEEECCCCCcCCCChHHHHHHHHHHHHh-cCCccceeecceeEEEeecccC-CcccCccCC
Confidence 9999999999987 999999999999999999999999999999995 6997 59999999999997321 111145777
Q ss_pred CCCcccCCccccchHHHHHHHHHHHhCCCceeeeccCCCCCceEEecCcchHHHHHhHHHHHHHHHHHHHHHcCCeeEec
Q 003194 552 FTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFV 631 (840)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~Gl~ATFm 631 (840)
.++||+..+++...+++++|+..|+++||+||++|||+|||||||++++.++|++||+++++|++||+||++||++||||
T Consensus 152 ~~~yf~~~~~~~~~~~~~di~~~l~~~Gi~ie~~hhEva~gQ~EI~~~~~~~l~~AD~~~~~K~vvk~vA~~hG~~aTFM 231 (443)
T COG0174 152 KGGYFDVAPLDEAEDFRRDIVEALEAAGIEIEAIHHEVAPGQFEINLRFDDALKAADQIVIFKYVVKEVAEKHGLTATFM 231 (443)
T ss_pred CCcccCccccccHHHHHHHHHHHHHHCCCCcEeccccccCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCccccccccccc-CCCcccccCCCCCcCCCcHHHHHHHHHHHHhHHhhhhhcCCCCCccccC-CCCCccCcc
Q 003194 632 PKFALDDIGSGSHVHLSLWQ-NGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNSYDRI-QPNTWSGAY 709 (840)
Q Consensus 632 pKP~~~~~GsG~H~H~Sl~~-~g~n~f~~~d~~~~~~lS~~~~~fiaGlL~h~~al~a~~~Pt~nSY~Rl-~~~~~ap~~ 709 (840)
|||+.+.+|||||+|+|||+ +|+|+|+ |+++..+||++++|||||||+|+++++||+|||+|||||| +|..|||++
T Consensus 232 pKP~~g~~GSGMH~H~Sl~~~dg~nlF~--d~~~~~~lS~~~~~~igGilkha~~~~ai~~PtvNSYkRl~vp~e~AP~~ 309 (443)
T COG0174 232 PKPFFGDNGSGMHVHQSLWDKDGGNLFA--DEDGYAGLSETALHFIGGILKHAPALTAITAPTVNSYKRLGVPYEWAPTY 309 (443)
T ss_pred CCCCCCCCCCceeEEEEEecCCCCcccc--CCCCcccHHHHHHHHHHHHHHHHHHHHhHhCCCcchhhhcCCCcccCcch
Confidence 99999999999999999995 5569999 6667889999999999999999999999999999999999 664789999
Q ss_pred ccccccCCCCcccccCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHHHHHHhhhc-CCCCCCCCCCcccccCCC---CC
Q 003194 710 QCWGKENREAPLRTACPPGVKDGVVSNFELKSFDGCANPHLGLAAIIASGIDGLRR-LCLPEPIDANPASLDGKL---QR 785 (840)
Q Consensus 710 ~~WG~~NR~~~iRv~~~~~~~~~~~~~~E~R~~d~~aNPYLalAailaAGl~GI~~-l~~~~~~~~~~~~~~~~~---~~ 785 (840)
++||.+|||++||||... ..+.++|||+|+||++|||||++||+|+||++||++ ++|++|+++|.++++... +.
T Consensus 310 ~~wg~~NRsa~iRIP~~~--~~~~~~RiE~R~pd~~aNPYLa~AaiL~Agl~GI~~ki~p~~p~~~n~y~~~~~e~~~~~ 387 (443)
T COG0174 310 IAWGVRNRSASVRIPASG--ANGKARRVEFRVPDPDANPYLAFAAILAAGLDGIENKLEPGEPVDGNLYELSPEERKEPT 387 (443)
T ss_pred hcccccCcceEEEeCCCC--CCCCcceeEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcccccccccCChhhhcccc
Confidence 999999999999999731 123457999999999999999999999999999999 999999999999875421 46
Q ss_pred CCcCHHHHHHHHhcChHHHhhhcHHHHHHHHHHHHHHHHHHhcCCchHHH
Q 003194 786 LPTSLSESVQALEKDDILRDMIGEKLLIAIKGIRKAEINYYSLNKDAYKQ 835 (840)
Q Consensus 786 LP~sl~eAl~~le~d~~l~~~lG~~~v~~y~~~k~~E~~~~~~~~~~~~~ 835 (840)
||.||.|||++|+.+++++++||++|++.|+++|+.||+.|...+++|+.
T Consensus 388 LP~sL~eAl~~l~~~~~~~~~lge~~~~~yi~~K~~E~~~~~~~v~~wE~ 437 (443)
T COG0174 388 LPASLREALDALEDSEFLREALGEDFIDAYIALKRAEWEEFRSRVTPWEF 437 (443)
T ss_pred CcccHHHHHHHhhhchHHHHhcChHHHHHHHHHHHHHHHHHHccCCHHHH
Confidence 99999999999998888999999999999999999999999999999865
No 3
>TIGR03105 gln_synth_III glutamine synthetase, type III. This family consists of the type III isozyme of glutamine synthetase, originally described in Rhizobium meliloti, where types I and II also occur.
Probab=100.00 E-value=7e-101 Score=867.31 Aligned_cols=409 Identities=30% Similarity=0.506 Sum_probs=366.2
Q ss_pred ccCCccEEEEEEecCCCCcceEEEechhhhhHHhhcccccccccccccccCCCCCCCCCCCCCCcEEEEEecCCceeccC
Q 003194 404 FESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRWRIPW 483 (840)
Q Consensus 404 ~~~~i~~v~l~~~D~~G~~R~k~vp~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~l~PD~~T~~~~Pw 483 (840)
++++|+||+++|+|++|++|+|.||.++|.+.+ ++|++|+.+++.+.. ...+.+|++|+||++|++++||
T Consensus 6 ~~~~i~~v~~~~~D~~G~~r~k~vp~~~~~~~~-~~G~~~~~~~~~~~~---------~~~~~~D~~l~PD~~Tl~~~pw 75 (435)
T TIGR03105 6 RDKGIKYFLASFVDLHGVQKAKLVPAEAIDHMA-TGGAGFAGFAAWGLG---------QSPADPDLMAIPDLDSLTQLPW 75 (435)
T ss_pred hhCCCCEEEEEEECCCCCeeEEEEeHHHHHHHH-cCCCcccchhhhccC---------CCCCCCCEEEEeccccceeCCC
Confidence 346899999999999999999999999999864 689998876654311 0124589999999999999999
Q ss_pred CccccceeeeccCCCCCcCCCChHHHHHHHHHHHHHhcCceeeeeeeeEEEEEeecccCCCCC---cccCCCCCcccCCc
Q 003194 484 QKQEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEE---WVPIDFTPYCSTAA 560 (840)
Q Consensus 484 ~~~~a~v~~d~~~~~g~p~~~~PR~~Lkr~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~---~~p~~~~~~~~~~~ 560 (840)
.+++++|+||++. +|+|++.|||++|||++++++ +.|+++++|+|+|||||+... ++... ..+....++|+...
T Consensus 76 ~~~~a~v~~d~~~-~G~p~~~~PR~vL~r~~~~~~-~~G~~~~~g~E~EF~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 152 (435)
T TIGR03105 76 QPGVAWVAADLHV-NGKPYPQAPRVVLKRQLAEAA-ELGLTLNTGVECEFFLLRRDE-DGSLSIADRADTLAKPCYDQRG 152 (435)
T ss_pred CCCeEEEEEEEee-CCCcCCCCHHHHHHHHHHHHH-hcCCceeEEeceEEEEEecCC-CCCcccCCCCCCCCccCCCCcc
Confidence 9999999999975 899999999999999999998 579999999999999998632 11110 11111234567777
Q ss_pred cccchHHHHHHHHHHHhCCCceeeeccCCCCCceEEecCcchHHHHHhHHHHHHHHHHHHHHHcCCeeEecccccCCCCC
Q 003194 561 YDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKFALDDIG 640 (840)
Q Consensus 561 ~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~Gl~ATFmpKP~~~~~G 640 (840)
.+...+|+++|++.|+++||+|+++|+|+|||||||++.|.++|+|||+++++|++||+||++||+.|||||||+.+.+|
T Consensus 153 ~~~~~~~~~~i~~~l~~~gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~vk~vA~~~Gl~atFmpKP~~~~~G 232 (435)
T TIGR03105 153 LMRRYDVLTEISDAMNALGWDPYQNDHEDANGQFEMNFTYADALTTADRHAFFRYMVKEIAEKHGMRATFMPKPFADLTG 232 (435)
T ss_pred hhhhhHHHHHHHHHHHHCCCCeEEeecCcCCCceEEecCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEecCccCCCCCc
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccc-CCCcccccCCCCCc--CCCcHHHHHHHHHHHHhHHhhhhhcCCCCCccccCCCC------CccCcccc
Q 003194 641 SGSHVHLSLWQ-NGENVFMASDSSSK--HGMSSVGEKFMAGVLHHLSSILAFTAPVPNSYDRIQPN------TWSGAYQC 711 (840)
Q Consensus 641 sG~H~H~Sl~~-~g~n~f~~~d~~~~--~~lS~~~~~fiaGlL~h~~al~a~~~Pt~nSY~Rl~~~------~~ap~~~~ 711 (840)
||+|+|+|||+ +|+|+|. |++++ .+||+++++||||||+|++++++|++||+||||||+|+ +|||+++|
T Consensus 233 sG~H~H~Sl~d~~g~n~f~--d~~~~~~~~lS~~~~~fiaGlL~h~~~l~a~~~PtvNSYkRl~p~~~~~~~~~AP~~~~ 310 (435)
T TIGR03105 233 NGCHFHLSLWDEDGRNLFA--DDSDPNGLGLSKLAYHFIGGILHHAPALCAVLAPTVNSYKRLNAPRTTSGATWAPNFIS 310 (435)
T ss_pred cceEEEEeeecCCCccccc--CCCCCccccccHHHHHHHHHHHHHHHHHHHHHCCCCccccccCCCcCCcCcccCCceee
Confidence 99999999995 7899998 44343 45999999999999999999999999999999999995 89999999
Q ss_pred ccccCCCCcccccCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHHHHHHhhhc-CCCCCCCCCCccccc---CCCCCCC
Q 003194 712 WGKENREAPLRTACPPGVKDGVVSNFELKSFDGCANPHLGLAAIIASGIDGLRR-LCLPEPIDANPASLD---GKLQRLP 787 (840)
Q Consensus 712 WG~~NR~~~iRv~~~~~~~~~~~~~~E~R~~d~~aNPYLalAailaAGl~GI~~-l~~~~~~~~~~~~~~---~~~~~LP 787 (840)
||.+||+++||||. .+|||+|++|++|||||++||+|+||++||++ ++||+|+++|+++.. .++++||
T Consensus 311 WG~~NR~a~iRv~~--------~~riE~R~~da~aNPYL~lAailaAgl~Gi~~~l~p~~p~~~~~~~~~~~~~~~~~LP 382 (435)
T TIGR03105 311 YGGNNRTHMVRIPD--------PGRFELRLADGAANPYLAQAAILAAGLDGIERKLDPGPPRDINLYAEELAARGVETLP 382 (435)
T ss_pred ccCCCCceeEeccC--------CCeeEecCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhhhhcCCcCCCC
Confidence 99999999999983 24999999999999999999999999999999 999999999987311 2577899
Q ss_pred cCHHHHHHHHhcChHHHhhhcHHHHHHHHHHHHHHHHHHhcCCchHHH
Q 003194 788 TSLSESVQALEKDDILRDMIGEKLLIAIKGIRKAEINYYSLNKDAYKQ 835 (840)
Q Consensus 788 ~sl~eAl~~le~d~~l~~~lG~~~v~~y~~~k~~E~~~~~~~~~~~~~ 835 (840)
+||.|||++|++|+.++++||++|+++|+++||+||++|.+.+++|++
T Consensus 383 ~sL~eAl~~le~d~~l~~~lG~~~v~~y~~~K~~E~~~~~~~vt~wE~ 430 (435)
T TIGR03105 383 QNLLEALRALEADPLLAEALGAEFVDEFLKLKRQEWEEYHRHVSDWEI 430 (435)
T ss_pred CCHHHHHHHHhcCHHHHHhhCHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 999999999999999999999999999999999999999999999987
No 4
>PRK09469 glnA glutamine synthetase; Provisional
Probab=100.00 E-value=7.2e-101 Score=872.59 Aligned_cols=417 Identities=25% Similarity=0.371 Sum_probs=370.4
Q ss_pred hhhccCCccEEEEEEecCCCCcceEEEechhhhhHHhhcccccccccccccccCCCCCCCCCCCCCCcEEEEEecCCcee
Q 003194 401 SDAFESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRWR 480 (840)
Q Consensus 401 ~~~~~~~i~~v~l~~~D~~G~~R~k~vp~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~l~PD~~T~~~ 480 (840)
++. +++|++|+++|+|++|++|+|.||+++|.+...++|++|+++++. + ....+.+|++++||++|+++
T Consensus 9 ~l~-~~~i~~v~~~~~Dl~G~~rgk~ip~~~~~~~~~~~G~~f~~~~~~------g----~~~~~~~D~~l~PD~~Tl~~ 77 (469)
T PRK09469 9 MLN-EHEVKFVDLRFTDTKGKEQHVTIPAHQVNADFFEEGKMFDGSSIG------G----WKGINESDMVLMPDASTAVL 77 (469)
T ss_pred HHH-hCCCCEEEEEEECCCCCEeEEEEEHHHhhHHHhcCCceecccccc------c----cCcCCCCCEEEEEcCCccEE
Confidence 444 468999999999999999999999999985334789888877651 1 01136789999999999999
Q ss_pred ccCC-ccccceeeeccCCC-CCcCCCChHHHHHHHHHHHHHhcCc--eeeeeeeeEEEEEeeccc--C------------
Q 003194 481 IPWQ-KQEEMIMADMHLKP-GEPWEYCPREALRKVSRLLKEEFNL--VLNAGFEIEFYLLKSVLR--E------------ 542 (840)
Q Consensus 481 ~Pw~-~~~a~v~~d~~~~~-g~p~~~~PR~~Lkr~~~~~~~~~G~--~~~~g~E~EF~l~~~~~~--~------------ 542 (840)
+||. +++|+|+||+++.+ |+|++.|||++|||++++++ +.|+ ++++|+|+|||||++... .
T Consensus 78 ~Pw~~~~~a~v~~d~~~~~~g~p~~~~PR~iLkr~~~~l~-~~G~~~~~~~g~ElEF~L~~~~~~~~~~~~~~~~~~~~~ 156 (469)
T PRK09469 78 DPFFEDSTLIIRCDILEPGTMQGYDRDPRSIAKRAEDYLR-STGIADTVLFGPEPEFFLFDDIRFGSSISGSHVAIDDIE 156 (469)
T ss_pred CCcCCCCcEEEEEEEEECCCCCcCCcCHHHHHHHHHHHHH-HcCCCcceeEecceEEEEEeccccccCccccccccccch
Confidence 9995 56899999999885 89999999999999999998 5799 999999999999985220 0
Q ss_pred -----------CCCCcccCCCCCcccCCccccchHHHHHHHHHHHhCCCceeeeccCCC-CCceEEecCcchHHHHHhHH
Q 003194 543 -----------GKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAG-KGQFEIALGHTVAAKAADNL 610 (840)
Q Consensus 543 -----------~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~g-pGQ~Ei~l~~~~~l~aaD~~ 610 (840)
+.....|.+.+.||+..+.+...+++++|++.|+++||+|+++|+|+| ||||||++.|.++|+|||++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~l~~~Gi~v~~~h~E~g~~GQ~Ei~l~~~d~L~aaD~~ 236 (469)
T PRK09469 157 AAWNSGTKYEGGNKGHRPGVKGGYFPVPPVDSSQDIRSAMCLVMEEMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEI 236 (469)
T ss_pred hcccccccccCCCCCCccCCCccccCCCcccchHHHHHHHHHHHHHCCCCcEEeeCCCCCCCeEEEeccCCCHHHHHHHH
Confidence 111223444455788888999999999999999999999999999999 59999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeeEecccccCCCCCcccccccccccCCCcccccCCCCCcCCCcHHHHHHHHHHHHhHHhhhhhc
Q 003194 611 IFTREVLRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFT 690 (840)
Q Consensus 611 ~~~r~~ik~vA~~~Gl~ATFmpKP~~~~~GsG~H~H~Sl~~~g~n~f~~~d~~~~~~lS~~~~~fiaGlL~h~~al~a~~ 690 (840)
+++|++||+||++||+.|||||||+.+.+|||||+|+|||++|+|+|.+ . +..+||+++++||||||+|++++++|+
T Consensus 237 ~~~k~~vk~va~~~g~~atFmpKP~~~~~GsG~H~H~Sl~~~g~N~F~~--~-~~~~ls~~~~~fiaGlL~h~~~l~a~~ 313 (469)
T PRK09469 237 QIYKYVVHNVAHAFGKTATFMPKPMFGDNGSGMHCHMSLSKNGVNLFAG--D-KYAGLSEQALYYIGGIIKHAKAINALA 313 (469)
T ss_pred HHHHHHHHHHHHHhCCEEEEeccccCCCCCceeEEEEeecCCCccccCC--C-CcCCcCHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999983 2 236799999999999999999999999
Q ss_pred CCCCCccccCCCCCccCccccccccCCCCcccccCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHHHHHHhhhc-CCCC
Q 003194 691 APVPNSYDRIQPNTWSGAYQCWGKENREAPLRTACPPGVKDGVVSNFELKSFDGCANPHLGLAAIIASGIDGLRR-LCLP 769 (840)
Q Consensus 691 ~Pt~nSY~Rl~~~~~ap~~~~WG~~NR~~~iRv~~~~~~~~~~~~~~E~R~~d~~aNPYLalAailaAGl~GI~~-l~~~ 769 (840)
+||+||||||+|++|||++++||.+||+++||||.. +. +..+|||+|++|++|||||++||+|+||++||++ ++||
T Consensus 314 ~PtvNSYkRl~p~~~ap~~~~WG~~NR~a~iRvp~~-~~--~~~~riE~R~~da~aNPYL~~AaiLaAGldGI~~~l~p~ 390 (469)
T PRK09469 314 NPTTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVV-AS--PKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPG 390 (469)
T ss_pred cCCCchHhhcCCCCcCcCcceecCCCCcceEEeccC-CC--CCCceEEecCCCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999841 21 2357999999999999999999999999999999 9999
Q ss_pred CCCCCCcccccC----CCCCCCcCHHHHHHHHhcChH-HHh--hhcHHHHHHHHHHHHHHHHHHhcCCchHHH
Q 003194 770 EPIDANPASLDG----KLQRLPTSLSESVQALEKDDI-LRD--MIGEKLLIAIKGIRKAEINYYSLNKDAYKQ 835 (840)
Q Consensus 770 ~~~~~~~~~~~~----~~~~LP~sl~eAl~~le~d~~-l~~--~lG~~~v~~y~~~k~~E~~~~~~~~~~~~~ 835 (840)
+|+++|+++++. .+++||+||.|||++|++|+. +++ +||++|++.|+++||+||++|.+.+++|++
T Consensus 391 ~p~~~~~y~~~~~~~~~~~~LP~sL~eAL~~le~d~~~~~~~~~lG~~~~~~~~~~Kr~E~~~~~~~vt~wE~ 463 (469)
T PRK09469 391 EAMDKNLYDLPPEEAAEIPQVAGSLEEALNALDADREFLTAGGVFTDDAIDAYIALRREEVDRVRMTPHPVEF 463 (469)
T ss_pred CCCCCChhhCChhhhcCcccCCCCHHHHHHHHHhCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 999999986532 566899999999999999965 754 999999999999999999999999999987
No 5
>PLN02284 glutamine synthetase
Probab=100.00 E-value=3.7e-73 Score=625.70 Aligned_cols=321 Identities=21% Similarity=0.223 Sum_probs=273.9
Q ss_pred ccEE--EEEEecCCCCcceEEEechhhhhHHhhcccccccccccccccCCCCCCCCCCCCCCcEEEEEecCCceeccCCc
Q 003194 408 VSLI--RVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRWRIPWQK 485 (840)
Q Consensus 408 i~~v--~l~~~D~~G~~R~k~vp~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~l~PD~~T~~~~Pw~~ 485 (840)
++|| +++|+|+.|..|.+.+|.+.+++. .|++|++++.++.. .+.+|++|+|| |++++||.+
T Consensus 21 ~~y~wi~~~~~dl~g~~~~~~~~~~~~~~~---~~~~fdGssi~~~~-----------~~~sD~~l~PD--t~~~~Pw~~ 84 (354)
T PLN02284 21 AEYIWIGGSGMDLRSKARTLPGPVTDPSKL---PKWNYDGSSTGQAP-----------GEDSEVILYPQ--AIFKDPFRG 84 (354)
T ss_pred EEEEEEEEEecCCCCceEEecccccccccC---CceeecCCCCCCcc-----------CCCceEEEEcc--EEEECCCCC
Confidence 4455 678999999999999999988763 79999988875421 24679999999 999999975
Q ss_pred -cccceeeeccCCCCCcCCCChHHHHHHHHHHHHHhcCceeeeeeeeEEEEEeeccc--CCCC-CcccCCCCCcccCCcc
Q 003194 486 -QEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLR--EGKE-EWVPIDFTPYCSTAAY 561 (840)
Q Consensus 486 -~~a~v~~d~~~~~g~p~~~~PR~~Lkr~~~~~~~~~G~~~~~g~E~EF~l~~~~~~--~~~~-~~~p~~~~~~~~~~~~ 561 (840)
++++|+||++++||+|++.|||++|||+++++++ .|+++++|+|+|||||+.... .|.+ ...|.++++||+..+.
T Consensus 85 ~~~~~vlcdv~~~dG~p~~~dPR~vL~r~~~~~~~-~g~~~~~G~E~EF~lf~~~~~~~~g~~~~~~~~~~~~y~~~~~~ 163 (354)
T PLN02284 85 GNNILVMCDAYTPAGEPIPTNKRAKAAKIFSHPDV-AAEEPWYGIEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCGVGA 163 (354)
T ss_pred CCeEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHh-cCCceeEEeceEEEEEecCCcccCCCCCCCcccCCCCcccCcch
Confidence 5799999999999999999999999999999985 799999999999999985221 1111 1145566777766553
Q ss_pred --ccchHHHHHHHHHHHhCCCceeeeccCCCCCceEEecCcchHHHHHhHHHHHHHHHHHHHHHcCCeeEecccccCC-C
Q 003194 562 --DAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKFALD-D 638 (840)
Q Consensus 562 --~~~~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~Gl~ATFmpKP~~~-~ 638 (840)
....+++++++++|+++||+|+++|||+|||||||++.|.++|+|||+++++|++||+||++||+.|||||||+.+ .
T Consensus 164 ~~~~~~~~~~~l~~~l~~~Gi~ve~~h~E~apGQ~Ei~l~~~d~l~aAD~~~~~K~vvk~vA~~~Gl~ATFMPKP~~~~~ 243 (354)
T PLN02284 164 DKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDPKPIPGDW 243 (354)
T ss_pred hhHHHHHHHHHHHHHHHHCCCCeEEEEcCcCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCCCCCCC
Confidence 3457999999999999999999999999999999999999999999999999999999999999999999999875 5
Q ss_pred CCcccccccccccCCCcccccCCCCCcCCCcHHHHHHHHHH-HHhHHhhhhhcCCCCCccccCCCCCccCc--ccccccc
Q 003194 639 IGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAGV-LHHLSSILAFTAPVPNSYDRIQPNTWSGA--YQCWGKE 715 (840)
Q Consensus 639 ~GsG~H~H~Sl~~~g~n~f~~~d~~~~~~lS~~~~~fiaGl-L~h~~al~a~~~Pt~nSY~Rl~~~~~ap~--~~~WG~~ 715 (840)
+|||||+|+|||+..++ +.+.+.+++++|+ |+|+++++||++ ||||||+|++|||+ +++||.+
T Consensus 244 ~GSGmH~H~SL~~~~~~-----------gg~~~~~~~l~~~~l~h~~~l~a~~~---NSYkRL~p~~eap~~~~~~wg~~ 309 (354)
T PLN02284 244 NGAGAHTNYSTKSMRED-----------GGYEVIKKAIEKLGLRHKEHIAAYGE---GNERRLTGKHETADINTFSWGVA 309 (354)
T ss_pred ccCcceeecChhhcccC-----------CcHHHHHHHHHHHHHHHHHHhhhhhc---CcHhhcCCCccCcccccceeecC
Confidence 99999999999962110 0124567899999 999999999997 99999999999995 8999999
Q ss_pred CCCCcccccCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHHHHHH
Q 003194 716 NREAPLRTACPPGVKDGVVSNFELKSFDGCANPHLGLAAIIASGID 761 (840)
Q Consensus 716 NR~~~iRv~~~~~~~~~~~~~~E~R~~d~~aNPYLalAailaAGl~ 761 (840)
||+++||||...+. ...+|||+|+||++|||||++||+|++.+.
T Consensus 310 NRsa~iRIP~~~~~--~~~~riE~R~pd~~aNPYLa~aaila~~~~ 353 (354)
T PLN02284 310 NRGASIRVGRDTEK--EGKGYFEDRRPASNMDPYVVTSMIAETTIL 353 (354)
T ss_pred CCceeEEECCCCCC--CCCCEEEEcCCCCCCCHHHHHHHHHHHHhc
Confidence 99999999963321 224699999999999999999999999874
No 6
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=100.00 E-value=1.9e-70 Score=584.37 Aligned_cols=251 Identities=42% Similarity=0.717 Sum_probs=221.0
Q ss_pred CCChHHHHHHHHHHHHHhcCceeeeeeeeEEEEEeecccCCCC--Cccc----CCCCCcccCCccccchHHHHHHHHHHH
Q 003194 503 EYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKE--EWVP----IDFTPYCSTAAYDAVSPVFQEVLADLH 576 (840)
Q Consensus 503 ~~~PR~~Lkr~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~--~~~p----~~~~~~~~~~~~~~~~~~~~~i~~~l~ 576 (840)
+.|||++|||+++++++ .|+++++|+|+|||||++....+.+ ...+ ....++|+....+...+++++|++.|+
T Consensus 1 ~~~PR~~Lkr~~~~~~~-~g~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 79 (259)
T PF00120_consen 1 EACPRSILKRVLERLEE-MGLSFKVGFELEFYLFDRDDDGGWPRPSGYPDEPGQDYGGYYSLSPLDAGEDFLEEIVDALE 79 (259)
T ss_dssp -T-HHHHHHHHHHHHHH-TCCEEEEEEEEEEEEESTCEETTSSSTTSEESESSSTTTBSSTTTTTSTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH-hCCceEEEEeEEEEEeccCcccccccccccccccccccCCcCCCchhhHHHHHHHHHHHHHH
Confidence 57999999999999985 7999999999999999984333332 1112 134677787788899999999999999
Q ss_pred hCCCceeeeccCCCCCceEEecCcchHHHHHhHHHHHHHHHHHHHHHcCCeeEecccccCCCCCccccccccccc--CCC
Q 003194 577 SLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQ--NGE 654 (840)
Q Consensus 577 ~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~Gl~ATFmpKP~~~~~GsG~H~H~Sl~~--~g~ 654 (840)
++||+|+++|+|+|||||||++.|+++|+|||+++++|++||+||++||+.|||||||+.+.+|||+|+|+|||+ +|+
T Consensus 80 ~~Gi~ve~~h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~~~~GsG~H~h~Sl~~~~~g~ 159 (259)
T PF00120_consen 80 QAGIPVEQIHHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFSGDNGSGMHLHISLWDAKDGK 159 (259)
T ss_dssp HCT--EEEEEEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSSTTSS--BEEEEEEECHHHTTE
T ss_pred HhhccccccccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccCCcCccchhhhhhhhhccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999996 899
Q ss_pred cccccCCCCCcCCCcHHHHHHHHHHHHhHHhhhhhcCCCCCccccCCCCCccCccccccccCCCCcccccCCCCCCCCcc
Q 003194 655 NVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNSYDRIQPNTWSGAYQCWGKENREAPLRTACPPGVKDGVV 734 (840)
Q Consensus 655 n~f~~~d~~~~~~lS~~~~~fiaGlL~h~~al~a~~~Pt~nSY~Rl~~~~~ap~~~~WG~~NR~~~iRv~~~~~~~~~~~ 734 (840)
|+|. |++++.+||+++++||||||+|++++++|++||+||||||+|++|||++++||.+||+++||||.. .....
T Consensus 160 n~f~--~~~~~~~ls~~~~~flaGll~h~~~l~a~~~pt~nsykRl~~~~~ap~~~~wG~~NR~a~iRi~~~---~~~~~ 234 (259)
T PF00120_consen 160 NLFY--DPDGPAGLSELARHFLAGLLKHAPALTAFTAPTVNSYKRLVPGSWAPTYISWGYDNRSAAIRIPSG---GGPKG 234 (259)
T ss_dssp ETTB--STTSHGHHHHHHHHHHHHHHCHHHHHHHCHSTSTTHHHHSSSTSSSSSBEEEEESHTTSSEEE-HH---HHHGG
T ss_pred cccc--cccccccccHHHHHHHHHHHHHHHHHHhhhCccCcchhhCCCCccceeccchhhcccchhhheecc---ccccc
Confidence 9999 555667899999999999999999999999999999999999999999999999999999999973 11235
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHHHH
Q 003194 735 SNFELKSFDGCANPHLGLAAIIASG 759 (840)
Q Consensus 735 ~~~E~R~~d~~aNPYLalAailaAG 759 (840)
+|||+|++|++|||||++||+|+||
T Consensus 235 ~~~E~R~~da~aNPYL~laailaAG 259 (259)
T PF00120_consen 235 TRIENRLPDADANPYLALAAILAAG 259 (259)
T ss_dssp SEEEEESSBTTSSHHHHHHHHHHHH
T ss_pred cEEeccCCCCCcCHHHHHHHHHhcC
Confidence 7999999999999999999999998
No 7
>PLN03036 glutamine synthetase; Provisional
Probab=100.00 E-value=1.5e-68 Score=595.21 Aligned_cols=322 Identities=20% Similarity=0.255 Sum_probs=269.3
Q ss_pred cEEEEEEecCCC-CcceEEEechhhhhHHhh-cccccccccccccccCCCCCCCCCCCCCCcEEEEEecCCceeccCCc-
Q 003194 409 SLIRVIWVDASG-QHRCRVVPVKRFNDIVTK-YGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRWRIPWQK- 485 (840)
Q Consensus 409 ~~v~l~~~D~~G-~~R~k~vp~~~~~~~~~~-~g~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~l~PD~~T~~~~Pw~~- 485 (840)
-.+.+.|+|.+| .+|||.-.+..-.+.+.+ .|++|++++.++.. ++.+|++|+|| |++++||.+
T Consensus 79 ~~~~yiw~~g~~~dlrgk~r~~~~~~~~~~~~~~w~fDGSs~g~a~-----------~~~sD~~l~PD--Tl~~~Pw~~~ 145 (432)
T PLN03036 79 IIAEYIWIGGSGIDLRSKSRTISKPVEHPSELPKWNYDGSSTGQAP-----------GEDSEVILYPQ--AIFKDPFRGG 145 (432)
T ss_pred EEEEEEEeCCCCCCCCCCeEEeCccccccccCCceeeecCccCCCc-----------CCCCCEEEEcc--EEEECCcCCC
Confidence 467888999999 688886654432222111 68899888875321 35689999999 999999965
Q ss_pred cccceeeeccCCCCCcCCCChHHHHHHHHHHHHHhcCceeeeeeeeEEEEEeecc--cCCCC-CcccCCCCCcccCCccc
Q 003194 486 QEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVL--REGKE-EWVPIDFTPYCSTAAYD 562 (840)
Q Consensus 486 ~~a~v~~d~~~~~g~p~~~~PR~~Lkr~~~~~~~~~G~~~~~g~E~EF~l~~~~~--~~~~~-~~~p~~~~~~~~~~~~~ 562 (840)
++++|+||++++||+|++.|||.+|++++++++. .|+++++|+|+|||||+... ..|.+ ...|.++++||+..+.+
T Consensus 146 ~~a~Vlcd~y~~dG~P~~~dpR~~L~~vl~~~~~-~g~~p~~G~E~EF~Lf~~~~~~~~G~~~~~~p~p~g~yy~~~~~d 224 (432)
T PLN03036 146 NNILVICDTYTPAGEPIPTNKRHRAAEIFSNKKV-VDEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGAD 224 (432)
T ss_pred CeEEEEEEEECCCCCCCCCCHHHHHHHHHHHhcc-cCCeEEEEeeeEEEEEEcccccccCCCCCCccCCCCCcCCCchhh
Confidence 5799999999999999999999999999999874 69999999999999998521 11222 23455677787766555
Q ss_pred c--chHHHHHHHHHHHhCCCceeeeccCCCCCceEEecCcchHHHHHhHHHHHHHHHHHHHHHcCCeeEecccccC-CCC
Q 003194 563 A--VSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKFAL-DDI 639 (840)
Q Consensus 563 ~--~~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~Gl~ATFmpKP~~-~~~ 639 (840)
. .++++++++++|+.+||+|+++|+|+|||||||++.|+++|+|||+++++|++||+||++||+.|||||||+. +++
T Consensus 225 ~~~~~~i~~~i~~a~~~~GI~Ie~~~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~gd~~ 304 (432)
T PLN03036 225 KSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIEGDWN 304 (432)
T ss_pred hhhHHHHHHHHHHHHHHCCCCeEEEEcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCCCCcC
Confidence 4 5899999999999999999999999999999999999999999999999999999999999999999999987 569
Q ss_pred CcccccccccccCCCcccccCCCCCcCCCcHHHHHHHHH-HHHhHHhhhhhcCCCCCccccCCCCCcc--CccccccccC
Q 003194 640 GSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAG-VLHHLSSILAFTAPVPNSYDRIQPNTWS--GAYQCWGKEN 716 (840)
Q Consensus 640 GsG~H~H~Sl~~~g~n~f~~~d~~~~~~lS~~~~~fiaG-lL~h~~al~a~~~Pt~nSY~Rl~~~~~a--p~~~~WG~~N 716 (840)
|||||+|+|+|+..++ + ++ .+.+++++| +|+|+++|+|+++ ||||||++++|| |.+++||.+|
T Consensus 305 GSGmHiH~Sl~d~r~~--------g--g~-~~~~~~i~gl~l~H~~~i~A~~~---NsykRL~~~~ea~~p~~~swG~~N 370 (432)
T PLN03036 305 GAGCHTNYSTKSMREE--------G--GF-EVIKKAILNLSLRHKEHISAYGE---GNERRLTGKHETASIDTFSWGVAN 370 (432)
T ss_pred CCCceeEechhhcccc--------c--hH-HHHHHHHhhHHHHHHHHHHhhhc---ChhhccCCCccccCCccceEeccC
Confidence 9999999999963211 0 11 345788888 9999999999998 999999999999 5599999999
Q ss_pred CCCcccccCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHHHHH
Q 003194 717 REAPLRTACPPGVKDGVVSNFELKSFDGCANPHLGLAAIIASGI 760 (840)
Q Consensus 717 R~~~iRv~~~~~~~~~~~~~~E~R~~d~~aNPYLalAailaAGl 760 (840)
|+++||||...+ ..+.+|||+|.||++|||||++|+|+...+
T Consensus 371 R~asIRIP~~~~--~~~~~riE~R~pda~aNPYLv~aai~~t~~ 412 (432)
T PLN03036 371 RGCSIRVGRDTE--KKGKGYLEDRRPASNMDPYIVTSLLAETTI 412 (432)
T ss_pred CcceEEECCCCC--CCcccEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 999999997331 122469999999999999999999998886
No 8
>PRK02925 glucuronate isomerase; Reviewed
Probab=100.00 E-value=1.6e-51 Score=453.36 Aligned_cols=360 Identities=16% Similarity=0.183 Sum_probs=304.8
Q ss_pred HHHHHhccCCccccCCCCcc---cC--------------C---------CCcchhhhccccCCC--------CccCCCcc
Q 003194 5 ELREVVENIELVDGHAHNIV---SL--------------D---------SSFPFIQSFSEATGP--------ALSYAPYS 50 (840)
Q Consensus 5 ~l~~~i~~~p~iD~H~H~~~---~~--------------~---------~~~~~~~~~~ea~~~--------~~~~~~~~ 50 (840)
+|++.++++||||-|||--- .+ | .+.|.+.|+.+|++- .+...-++
T Consensus 18 ~LY~~a~~lPIiDyH~Hl~p~~iaen~~F~n~telwl~gDHYkwR~Mra~GV~e~~ITg~as~~ekf~~~a~t~p~~~Gn 97 (466)
T PRK02925 18 RLYHDAKDLPIIDYHCHLDPKEIAENKPFKNITELWLKGDHYKWRAMRSNGVDEELITGDASDREKFRAWAKTVPLFIGN 97 (466)
T ss_pred HHHHHHhcCceeCCCCCCCHHHHhccCCCCCHHHHhccCccHHHHHHHHcCCCHHHccCCCCHHHHHHHHHHhhhhhcCC
Confidence 58877999999999999832 11 1 235777777676641 12346778
Q ss_pred hhhhhHHHHHHhhhCCCC-----CHHHHHHHHH-Hc-CcccHHHHHHhhCCeEEEEEecCCCCCCCCChHHHHhhcc---
Q 003194 51 LSFKRNLKNIAELYGCDS-----SLQAVEEYRR-AA-GLQSICSICFEAANISAVLIDDGLKLDKKHGLDWHKSLVP--- 120 (840)
Q Consensus 51 ~~~~~~~~~l~~~fg~~~-----~~~~i~~~~~-~l-~~~~~~r~ll~~~~v~~~~~d~g~~~d~~~~~~~h~~~~~--- 120 (840)
..|.|..+||++||||++ ||++||+++| .| ++++++|.|++++||++||| ||||+|+|+||+++++
T Consensus 98 PlyhW~hlELkr~FGi~~~l~~~nA~~Iwd~~n~~L~~p~f~~r~Ll~~~nVe~icT----TDDP~DdL~~H~~l~~d~~ 173 (466)
T PRK02925 98 PLYHWTHLELRRVFGITELLSPETADEIWDEINELLATPEFRPRALIERFNVEVICT----TDDPLDDLEYHKAIAEDGS 173 (466)
T ss_pred HHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHHHHCCCCCCHHHHHHHCCceEEEe----cCCCCccHHHHHHHHhcCC
Confidence 889999999999999996 9999999998 56 57799999999999999999 9999999999998874
Q ss_pred ---------ccceEEeccccHH-HHHHHhCC-CC-CcccHHHHHHHHHHHHHhhccccccceeeecc--cCCCCCCCC--
Q 003194 121 ---------FVGRILRIERLAE-EILDQASP-DG-SIWTLDVFIETFLKQLRSAANKIVGLKSIAAY--RSGLEINPH-- 184 (840)
Q Consensus 121 ---------~~~~i~rie~~a~-~~~~~~~~-~~-~~~~~~~~~~al~~~l~~~~~~~vgfks~~~y--~~Gl~~~p~-- 184 (840)
|+++++.|++..+ +++++|++ ++ +|.+|++|++||++|+++ |++.||. ||||+..++
T Consensus 174 f~~~VlPtfRPD~a~~i~~~~f~~~~~kL~~~~g~~i~~~~~ll~AL~~R~~~-------F~~~Gc~~sDHgl~~~~~~~ 246 (466)
T PRK02925 174 FDGRVLPTFRPDKAFNIEHEGFADYVEKLGEVTGTDITTFDGLLEALRKRRDY-------FAAHGCRSSDHGLDTVVTAE 246 (466)
T ss_pred CCceEecCcCCccccCCCchhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH-------HHHcCCEEhhcCCCccCCCC
Confidence 3579999999877 79999887 44 899999999999999999 7788885 999986554
Q ss_pred CCHHHHHHHHHHHHhCCCCCcCCchhhhhHHHHHHHHHHhhCCCcEEEeeCC------------C-CCCCCcCC----cC
Q 003194 185 VTKKDAEEGLAEDLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGF------------G-DKDLDLRL----SN 247 (840)
Q Consensus 185 ~~~~ea~~~~~r~l~~~~~~~~~~~~l~d~~l~~l~e~~~e~glPvq~H~G~------------g-d~~~~~~~----~~ 247 (840)
.+.++++++|+++++++.....+...+..++++.+.++++|.||+||+|.|. | |.|.|... +.
T Consensus 247 ~~~~e~~~if~k~~~g~~lt~~E~~~f~~~~l~~la~~y~e~gwvmQlH~Ga~Rn~n~~~~~~lG~DtG~Dsi~d~~~a~ 326 (466)
T PRK02925 247 LSEAEADAIFAKALAGGTLTEEEIAQFRTAMLTELARMYAEDGWVMQLHIGALRNNNTRMFKKLGPDTGFDSIGDTPIAE 326 (466)
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCeEEeecccccCCCHHHHHHhCCCCCcCCCCchhHHH
Confidence 6899999999999986433444456677789999999999999999999998 4 55655433 33
Q ss_pred hh--hhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCE------eEecccccCCCCcHHHHHHHHHHHHHHCCCCc
Q 003194 248 PL--HLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ------VYLDFGLAIPKLSVQGMISSIKELLELAPTKK 319 (840)
Q Consensus 248 P~--~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~pN------Vyld~s~~~~~~~~~g~~~~l~~~le~~~~~k 319 (840)
++ +|+.+-+.+++|+++++.+++.+. .+.+.|+++||+ ||++.+|||++. ++||.+++..+.+.+++++
T Consensus 327 ~L~~lL~~l~~~~~LpktIly~Lnp~~n--~~lat~~g~F~~~~~~gkvq~Ga~WWFnD~-~~GM~~ql~~la~~glls~ 403 (466)
T PRK02925 327 ALSPLLDALGNENDLPKTILYTLNPTDN--EELATMAGNFQGLGIPGKMQFGAGWWFNDQ-KDGMERQMEQLAETGLLSN 403 (466)
T ss_pred HHHHHHHhcccCCCCCeEEEEecCcccH--HHHHHHHcccCCCCCCCccccccchhhccC-HHHHHHHHHHHHhccchhh
Confidence 43 577777778999999999999763 478999999965 599999999995 8999999999999999999
Q ss_pred EE-EecCCCCCcccchhhHHHHHHHHHHHHhhhhcCCCCChhH--HHHHHHHHHHHhHHHHhcC
Q 003194 320 VM-FSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGE--AIEVAKDIFALNAAQFYKI 380 (840)
Q Consensus 320 il-fgSD~~~~Pe~~~~~~~~~R~~l~~~l~~~v~~g~l~~~e--a~~~~~~Il~~NA~rly~l 380 (840)
++ |.||||+|. +|++|++|||+||++|++||++|++|.++ +.+++++|||+||+++|++
T Consensus 404 fvGmltDSRsfl--Sy~RHeyFRRilc~~lg~~Ve~G~~P~d~~~l~~iv~dI~y~Na~~yF~~ 465 (466)
T PRK02925 404 FVGMLTDSRSFL--SYARHEYFRRILCNFLGRWVEEGELPADEELLGEMVKDICYNNAKRYFKL 465 (466)
T ss_pred cccccccHHHHH--hhhHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhHHHhcCC
Confidence 99 999999998 67999999999999999999999998665 7899999999999999986
No 9
>COG1904 UxaC Glucuronate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-48 Score=413.36 Aligned_cols=359 Identities=18% Similarity=0.214 Sum_probs=301.4
Q ss_pred HHHHHhccCCccccCCCCcccC-----------------C---------CCcchhhhccccCCC----C----ccCCCcc
Q 003194 5 ELREVVENIELVDGHAHNIVSL-----------------D---------SSFPFIQSFSEATGP----A----LSYAPYS 50 (840)
Q Consensus 5 ~l~~~i~~~p~iD~H~H~~~~~-----------------~---------~~~~~~~~~~ea~~~----~----~~~~~~~ 50 (840)
.|...+.++||||.|||--=.+ | .+.+-+.++.++++. + .....++
T Consensus 17 ~l~~~vkdlPIidpH~Hl~P~~i~en~~F~d~t~l~l~~DHY~wRmmrs~GV~e~~itgd~sdrEkw~afa~~~~~~~Gn 96 (463)
T COG1904 17 RLHAYVKDLPIIDPHCHLEPQEIAENEAFPDPTSLWLKGDHYKWRMMRSNGVAERLITGDTSDREKWRAFAKTVPLFIGN 96 (463)
T ss_pred HHHHhhcCCCeeCCcCCCCHHHHhhcCCCCCHHHHhhcccHHHHHHHHHcCCchhhcCCCCChHHHHHHHHHhhhhhcCC
Confidence 5677899999999999953211 1 122344444544431 1 1245677
Q ss_pred hhhhhHHHHHHhhhCCCC-----CHHHHHHHHHH-c-CcccHHHHHHhhCCeEEEEEecCCCCCCCCChHHHHhhcc---
Q 003194 51 LSFKRNLKNIAELYGCDS-----SLQAVEEYRRA-A-GLQSICSICFEAANISAVLIDDGLKLDKKHGLDWHKSLVP--- 120 (840)
Q Consensus 51 ~~~~~~~~~l~~~fg~~~-----~~~~i~~~~~~-l-~~~~~~r~ll~~~~v~~~~~d~g~~~d~~~~~~~h~~~~~--- 120 (840)
..|.|..++|+++|||++ |+++||+++++ | ++++++|.|++++||++||| ||||+|+|+||+++++
T Consensus 97 P~y~W~hlel~r~FgI~e~ls~~tad~iwd~~n~~La~~~frpRaL~~~~NVevv~T----TDdP~dsL~~H~~l~~d~~ 172 (463)
T COG1904 97 PLYHWTHLELERVFGITELLSEETADEIWDEINDLLAQPDFRPRALIEQFNVEVVCT----TDDPIDSLEYHKELAEDGF 172 (463)
T ss_pred cchhhhHHHHhhhcCcccccCcccHHHHHHHHHHHhCCCCCCHHHHHHHcCeeEEec----CCCCcccHHHHHHHHhcCC
Confidence 888999999999999997 99999999985 4 56799999999999999999 9999999999999987
Q ss_pred --------ccceEEeccccHH-HHHHHhCC-CC-CcccHHHHHHHHHHHHHhhccccccceeeecc--cCCCCCCCC--C
Q 003194 121 --------FVGRILRIERLAE-EILDQASP-DG-SIWTLDVFIETFLKQLRSAANKIVGLKSIAAY--RSGLEINPH--V 185 (840)
Q Consensus 121 --------~~~~i~rie~~a~-~~~~~~~~-~~-~~~~~~~~~~al~~~l~~~~~~~vgfks~~~y--~~Gl~~~p~--~ 185 (840)
|+++++.||...+ +++++++. .+ ++.+|++|++|+++|+++ ||+.||. ||||+..++ .
T Consensus 173 ~~~VlPa~RPD~~~~i~~~gf~~~~~kL~~~ag~~~~~~~~~l~Al~~R~~~-------F~~~G~~sSDH~l~t~~~a~~ 245 (463)
T COG1904 173 HGRVLPAWRPDAAVDIERAGFADYVEKLGEVAGTDISTWDGYLDALRKRREY-------FKSHGATSSDHGLDTADTAEL 245 (463)
T ss_pred CceeccCcCCccccCCCccchHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH-------HHHcCCcccccCCCccccccC
Confidence 3679999999877 89999887 34 788999999999999999 9999995 999988766 7
Q ss_pred CHHHHHHHHHHHHhCCCCCcCCchhhhhHHHHHHHHHHhhCCCcEEEeeCC------------C-CCCCCcC----CcCh
Q 003194 186 TKKDAEEGLAEDLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGF------------G-DKDLDLR----LSNP 248 (840)
Q Consensus 186 ~~~ea~~~~~r~l~~~~~~~~~~~~l~d~~l~~l~e~~~e~glPvq~H~G~------------g-d~~~~~~----~~~P 248 (840)
+..+|.++|.|.+++......+...+...++..+.+++++.||+||+|+|. | |.|+|.+ ++.+
T Consensus 246 ~~~~a~~if~k~l~G~~lt~~E~~~f~a~~l~~l~km~~~~gwVmQiH~ga~RN~n~~~~~k~G~D~GfDi~~~~~~a~~ 325 (463)
T COG1904 246 SEADADAIFDKRLAGEALSTEEAEQFKAAMLTELAKMSAEDGWVMQIHPGALRNHNPRMFKKLGPDTGFDIPNDTEIAEG 325 (463)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhhcCeeEEecccccccCCHHHHHHhCCCCCCCCCCcchhHHH
Confidence 899999999999997443444555677779999999999999999999998 4 5566544 4555
Q ss_pred h--hhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHH------hCCEeEecccccCCCCcHHHHHHHHHHHHHHCCCCcE
Q 003194 249 L--HLRAILEDKRFSKCRFVLLHASYPFSKEASYLAY------VYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKV 320 (840)
Q Consensus 249 ~--~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~------~~pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~ki 320 (840)
+ +|+.+-.+++.|++.++++++.+ ..+.+.|++ .+|+++++++|||++. ++||.+++..+.+++++.++
T Consensus 326 L~~LLd~~~~~~~L~k~ily~lnp~~--~~~latm~g~fq~~~~~~~~q~G~~WWFnD~-~dGM~r~~e~la~~gl~~nf 402 (463)
T COG1904 326 LKPLLDAFGEDNDLPKTILYLLNPND--NEVLATMAGNFQGEGVSPKLQFGPAWWFNDS-KDGMERQREQLASLGLLSNF 402 (463)
T ss_pred HHHHHHhhcccCCCceEEEEecCCch--hHHHHHHHhhccccccCcccccCcchhhcCC-hHHHHHHHHHHHHHHHHHhh
Confidence 4 67777777899999999999976 456799998 7799999999999985 89999999999999999999
Q ss_pred E-EecCCCCCcccchhhHHHHHHHHHHHHhhhhcCCCCChhHHH--HHHHHHHHHhHHHHhc
Q 003194 321 M-FSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAI--EVAKDIFALNAAQFYK 379 (840)
Q Consensus 321 l-fgSD~~~~Pe~~~~~~~~~R~~l~~~l~~~v~~g~l~~~ea~--~~~~~Il~~NA~rly~ 379 (840)
+ |.||+|+|+ +|++|++|||++|+++++||++|+++.++|. .+...|+|+|++.+|.
T Consensus 403 vGmltDsRsfl--Sy~Rhe~fRRilC~~igr~veeg~~p~dea~~~~~~~~i~y~n~~~~f~ 462 (463)
T COG1904 403 VGMLTDSRSFL--SYTRHEYFRRILCALIGRWVEEGEIPRDEALLGVIVKNICYNNAVDYFA 462 (463)
T ss_pred hcccccchhhh--cccHHHHHHHHHHHHHHHHHHcCCCCcchHHhhhhhhhcccccHHHHhc
Confidence 9 999999999 6889999999999999999999999999853 6777899999999985
No 10
>PF02614 UxaC: Glucuronate isomerase; InterPro: IPR003766 Uronate isomerase (also known as glucuronate isomerase) catalyses the reaction D-glucuronate to D-fructuronate and also converts D-galacturonate to D-tagaturonate [].; GO: 0008880 glucuronate isomerase activity, 0006064 glucuronate catabolic process; PDB: 2QEE_B 3HKA_A 3HK8_A 2PNK_H 2Q6E_A 3HK7_A 3HK5_B 3HK9_A 2Q08_L 1J5S_B ....
Probab=100.00 E-value=1.1e-45 Score=415.19 Aligned_cols=359 Identities=17% Similarity=0.180 Sum_probs=266.3
Q ss_pred hHHHHH-hccCCccccCCCCcccC---C-----------------------CCcchhhhccccCCC----C----ccCCC
Q 003194 4 EELREV-VENIELVDGHAHNIVSL---D-----------------------SSFPFIQSFSEATGP----A----LSYAP 48 (840)
Q Consensus 4 ~~l~~~-i~~~p~iD~H~H~~~~~---~-----------------------~~~~~~~~~~ea~~~----~----~~~~~ 48 (840)
.+|++- ++++||||-|||-.-.. + .+.|.+-+++++... + +....
T Consensus 16 ~~Ly~~~a~~lPIiD~H~HL~p~~i~en~~f~~i~elwl~~DHYkwR~mra~Gv~E~~itg~a~~~ekF~a~a~~~~~~~ 95 (462)
T PF02614_consen 16 RRLYHEYAKDLPIIDYHCHLDPKEIAENRLFGNITELWLYGDHYKWRAMRANGVPEEFITGDASPREKFRAWAETVPRFI 95 (462)
T ss_dssp HHHHHHCCTTS-EEESS-S--HHHHHCTSB-SSHHHHHTSTTHHHHHHHHHTT-HGGGTTCSSSHHHHHHHHHHHGGGGT
T ss_pred HHHHHHHHhCCCEeCCCCCCChHHHhhcCCCCCHHHHhccCchhHHHHHHHcCCCccccCCCCCCHHHHHHHHHhhhhhc
Confidence 356654 89999999999965421 1 122444444443321 1 12355
Q ss_pred cchhhhhHHHHHHhhhCCCC-----CHHHHHHHHH-Hc-CcccHHHHHHhhCCeEEEEEecCCCCCCCCChHHHHhhcc-
Q 003194 49 YSLSFKRNLKNIAELYGCDS-----SLQAVEEYRR-AA-GLQSICSICFEAANISAVLIDDGLKLDKKHGLDWHKSLVP- 120 (840)
Q Consensus 49 ~~~~~~~~~~~l~~~fg~~~-----~~~~i~~~~~-~l-~~~~~~r~ll~~~~v~~~~~d~g~~~d~~~~~~~h~~~~~- 120 (840)
++..|.|..++|+++|||++ |+++||++++ .+ .+++++|.|++++||++||| ||||+|+|+||+.++.
T Consensus 96 gnp~~~W~hleL~r~FGid~~L~~~~a~~I~d~~n~~l~~~~~~~r~l~~~~nV~~v~T----TDDP~D~L~~H~~l~~~ 171 (462)
T PF02614_consen 96 GNPLYHWTHLELKRYFGIDEPLSEENADEIWDACNEKLATPEFSPRALLRRSNVEVVCT----TDDPLDDLEYHRWLAED 171 (462)
T ss_dssp TSHHHHHHHHHHHHCTT--C-GSHHHHHHHHHHHHHHHTSGGGSHHHHHHHTTEEEEE------B-TTSHHHHHHHHHCH
T ss_pred CCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHhcccCcCHHHHHHHCCceEEEe----CCCCCCchHHHHHHhcc
Confidence 77889999999999999996 8999999998 44 66799999999999999999 9999999999999974
Q ss_pred -----------ccceEEeccccHH-HHHHHhCC--CCCcccHHHHHHHHHHHHHhhccccccceeeecc--cCCCCCCCC
Q 003194 121 -----------FVGRILRIERLAE-EILDQASP--DGSIWTLDVFIETFLKQLRSAANKIVGLKSIAAY--RSGLEINPH 184 (840)
Q Consensus 121 -----------~~~~i~rie~~a~-~~~~~~~~--~~~~~~~~~~~~al~~~l~~~~~~~vgfks~~~y--~~Gl~~~p~ 184 (840)
|+++++.|+...+ ++++++++ +.+|.++++|++|+++|+++ |++.||. +|||+..+.
T Consensus 172 ~~~~~~v~PtfRpD~~l~i~~~~~~~~l~~L~~~~g~~i~~~~~l~~Al~~r~~~-------F~~~G~~~sDh~l~~~~~ 244 (462)
T PF02614_consen 172 ENFDPRVLPTFRPDKALNIDWPGFADYLEKLGEAAGIEISTFEDLLEALRKRRDY-------FKEMGCRASDHGLPDFPF 244 (462)
T ss_dssp CCT-TEEE-EBEGHHHHHTTSTTHHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHH-------HHHTT-SEEEEEESS--S
T ss_pred CCCCceEecccCcccccCCChhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH-------HHHhCCeEeecCCCcccC
Confidence 2467777777666 88888886 44789999999999999999 8888884 999985544
Q ss_pred --CCHHHHHHHHHHHHhCCCCCcCCchhhhhHHHHHHHHHHhhCCCcEEEeeCC------------C-CCCCCcCCc---
Q 003194 185 --VTKKDAEEGLAEDLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGF------------G-DKDLDLRLS--- 246 (840)
Q Consensus 185 --~~~~ea~~~~~r~l~~~~~~~~~~~~l~d~~l~~l~e~~~e~glPvq~H~G~------------g-d~~~~~~~~--- 246 (840)
++.++++++|.|+++++.....+...+..+++..+.++|+|+|||||+|.|. | |.|.|....
T Consensus 245 ~~~~~~e~~~if~k~~~g~~ls~~e~~~~~~~ll~~l~~~~~e~g~vmQlHiGa~Rn~n~~~~~~lG~D~G~D~~~~~~~ 324 (462)
T PF02614_consen 245 PPPSEEEAERIFKKALAGESLSAEEIDKFRTYLLWELAKMYAERGWVMQLHIGALRNNNSRMFPRLGPDTGFDSIGDFPD 324 (462)
T ss_dssp S---HHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHHT-EEEEEE-EETTSSHHHHHHTGSSSSG-EE-S--H
T ss_pred CCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCcccCCCHHHHHHhCCCCCCCCCCchHH
Confidence 6789999999999887544444556677779999999999999999999998 3 345554332
Q ss_pred -Chh--hhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCC-----EeEecccccCCCCcHHHHHHHHHHHHHHCCCC
Q 003194 247 -NPL--HLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYP-----QVYLDFGLAIPKLSVQGMISSIKELLELAPTK 318 (840)
Q Consensus 247 -~P~--~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~p-----NVyld~s~~~~~~~~~g~~~~l~~~le~~~~~ 318 (840)
.++ +|+.+-+.+++|++.++++++. +..+++.+|++|| |||++.+|||++. ++||.+++..+.+.++..
T Consensus 325 ~~~L~~ll~~~~~~~~lpk~ily~Ln~~--~~~~la~lag~F~~~~~~~vq~G~~WWF~D~-~~gm~~q~~~~~~~~ll~ 401 (462)
T PF02614_consen 325 AEALSRLLDRFDNNGKLPKTILYSLNPT--DNHELATLAGNFQDGGIPKVQLGGAWWFNDT-PDGMERQMTALAEMGLLS 401 (462)
T ss_dssp HHHHHHHHHHHTTTTT-SEEEEEESSGG--GHHHHHHHHHHST-TTSTTEEEB---GGG-S-HHHHHHHHHHHHHHCHGC
T ss_pred HHHHHHHHHhccccCCCceeEEEecChh--hHHHHHHHHhhcCCcCcceeeecCcccccCC-HHHHHHHHHHHHHHhCcc
Confidence 222 4444444567788888888886 5678899999999 9999999999985 889999999999999999
Q ss_pred cEE-EecCCCCCcccchhhHHHHHHHHHHHHhhhhcCCCCChhHHH--HHHHHHHHHhHHHHh
Q 003194 319 KVM-FSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAI--EVAKDIFALNAAQFY 378 (840)
Q Consensus 319 kil-fgSD~~~~Pe~~~~~~~~~R~~l~~~l~~~v~~g~l~~~ea~--~~~~~Il~~NA~rly 378 (840)
|++ |.||||+|. +|++|++|||+||++|++||++|.+|.+++. +++++|||+||+++|
T Consensus 402 ~fvGmltDsRsfl--S~~RheyfRRilc~~lg~~ve~g~~p~d~~~l~~~v~di~y~na~~yf 462 (462)
T PF02614_consen 402 NFVGMLTDSRSFL--SYPRHEYFRRILCNVLGEWVEEGEWPEDEAFLGRIVEDICYNNAKRYF 462 (462)
T ss_dssp GCB------SCTT--HHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHTHHHHHHC
T ss_pred ceeceecchHHHh--hhhHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhHHHhC
Confidence 998 999999999 5699999999999999999999999999854 899999999999986
No 11
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-35 Score=310.57 Aligned_cols=339 Identities=20% Similarity=0.250 Sum_probs=241.0
Q ss_pred hhhccCCccEEEEEEecCCC-CcceEEEechhhhhHHhhc-ccccccccccccccCCCCCCCCCCCCCCcEEEEEecCCc
Q 003194 401 SDAFESDVSLIRVIWVDASG-QHRCRVVPVKRFNDIVTKY-GVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTR 478 (840)
Q Consensus 401 ~~~~~~~i~~v~l~~~D~~G-~~R~k~vp~~~~~~~~~~~-g~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~l~PD~~T~ 478 (840)
.|...++-..+.++|+|.+| .+|+|+-..+.-.+.+.+. -+++.+++.++. .+..+|.+|+|. .+
T Consensus 22 ~L~~~~~kv~a~YVwidg~ge~~rsk~rt~d~~~~~~~~lp~wnydgsst~QA-----------~g~nSd~~l~Pv--a~ 88 (380)
T KOG0683|consen 22 YLRAKRKKVQAEYVWIDGTGENLRSKTRTLDAEPSSISELPIWNYDGSSTGQA-----------PGENSDVYLRPV--AI 88 (380)
T ss_pred cccccCceEEEEEEEecCccccchhhcccccCCccCcccCccccccCcccccc-----------cCCCCceEEeeh--hh
Confidence 44555566788999999999 7999988877655443322 334444443322 234589999998 78
Q ss_pred eeccCCcc-ccceeeeccCCCCCcCCCChHHHHHHHHHHHHHhcCceeeeeeeeEEEEEeecccCCCC-Cc----ccCCC
Q 003194 479 WRIPWQKQ-EEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKE-EW----VPIDF 552 (840)
Q Consensus 479 ~~~Pw~~~-~a~v~~d~~~~~g~p~~~~PR~~Lkr~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~-~~----~p~~~ 552 (840)
.+.|++.+ ..+|||+.++.+|.|.+.+-|..+.+++.... -..-++++|.|+||.+++.. .+.+ .| -|..+
T Consensus 89 ~~dPfr~g~Nilv~c~~~~~~~~P~~tn~R~~c~~~~~~~~-~~~~~PWfg~Eqeyt~l~~~--~~~p~gwp~~GFp~Pq 165 (380)
T KOG0683|consen 89 YPDPFRNGNNILVMCDTYDFDGKPTETNKRVACARIMPKLS-TKDTEPWFGMEQEYTLLDAL--DGHPFGWPKGGFPGPQ 165 (380)
T ss_pred cCCcccCCCCEEEEeeccCCCCCcccccchhhHHHHhcccc-ccccCCchhhhHHHhhhccc--cCCcccCCccCCCCCC
Confidence 89999876 57899999999999999999999999999886 23568999999999999873 2221 12 24457
Q ss_pred CCcccCCcccc--chHHHHHHHHHHHhCCCceeeeccCCCCCceEEecCcchHHHHHhHHHHHHHHHHHHHHHcCCeeEe
Q 003194 553 TPYCSTAAYDA--VSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATF 630 (840)
Q Consensus 553 ~~~~~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~Gl~ATF 630 (840)
++||+..+.++ ..++.+..+.++...||.+.+++.|+.||||||+++|+.++.++|+++.+|+++++||+++|+.|||
T Consensus 166 gpyyc~VGad~~~~rdiveahy~acLyaGl~i~G~N~EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~~Gviasf 245 (380)
T KOG0683|consen 166 GPYYCGVGADRVFGRDIVEAHYRACLYAGLNISGINVEVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEKFGVIASF 245 (380)
T ss_pred CCceeeccccccccchhhhhhHHHHHhhheeeccccccccCceeEEeecchhcccchhhHHHHHHHHHHHHHHhCeeEEe
Confidence 88888777665 5799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC-CCCCcccccccccccCCCcccccCCCCCcCCCcHHHHHHHHHHHHhHHhhhhhcCCCCCccccCCCCCccCcc
Q 003194 631 VPKFAL-DDIGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNSYDRIQPNTWSGAY 709 (840)
Q Consensus 631 mpKP~~-~~~GsG~H~H~Sl~~~g~n~f~~~d~~~~~~lS~~~~~fiaGlL~h~~al~a~~~Pt~nSY~Rl~~~~~ap~~ 709 (840)
.|||.. +++|+|+|.++|..+. +.+ |..++....+|..++|+|.....|.
T Consensus 246 ~pKp~~g~WngaG~Htn~ST~~m----------------------r~~----~g~~~i~~a~~~ls~rh~~hi~~yd--- 296 (380)
T KOG0683|consen 246 DPKPILGDWNGAGCHTNFSTKEM----------------------REA----GGLKIIEEAIPKLSKRHREHIAAYD--- 296 (380)
T ss_pred cCCCCCCcccCcccccccchhHH----------------------Hhc----cCHHHHHHHhhhcchhhhhhhhhcC---
Confidence 999975 5799999999998421 111 3344555556666777776665554
Q ss_pred ccccccCCCCcccccCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHHHHHHhhhc-CCCCCCCCCCcccccCCCCCCCc
Q 003194 710 QCWGKENREAPLRTACPPGVKDGVVSNFELKSFDGCANPHLGLAAIIASGIDGLRR-LCLPEPIDANPASLDGKLQRLPT 788 (840)
Q Consensus 710 ~~WG~~NR~~~iRv~~~~~~~~~~~~~~E~R~~d~~aNPYLalAailaAGl~GI~~-l~~~~~~~~~~~~~~~~~~~LP~ 788 (840)
.+||.+|+....+. ... .+..++...-+++|||+.++.+.++|.+|.-+ -.|. .+-|||.. ..-.+|.
T Consensus 297 p~~G~dN~rrltg~-hEt------~~i~~Fs~GvAnr~~siri~r~va~~~~Gy~edrrP~--sN~Dpy~V--t~~~~~t 365 (380)
T KOG0683|consen 297 PKGGKDNERRLTGR-HET------GSIDNFSWGVANRNPSIRIPRTVAAEGKGYFEDRRPS--SNCDPYAV--TLMIIPT 365 (380)
T ss_pred ccCCccchhhhcCC-Ccc------ccccccccccccCCceeeechhhhcccccccccCCCc--CCCCccee--eHHHhhH
Confidence 44555555555551 111 11222222333355666666666665555555 3221 22233311 1223555
Q ss_pred CHHHHHH
Q 003194 789 SLSESVQ 795 (840)
Q Consensus 789 sl~eAl~ 795 (840)
+|.+++.
T Consensus 366 ~l~~~~~ 372 (380)
T KOG0683|consen 366 TLLEAVE 372 (380)
T ss_pred HHhcccc
Confidence 6665555
No 12
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=99.92 E-value=1.9e-24 Score=233.72 Aligned_cols=196 Identities=28% Similarity=0.378 Sum_probs=156.8
Q ss_pred HHHHHHHHhhccccccceeeecccCCCCCCCCCCHHHHHHHHHHHHhCCC--C----CcCCchhhhhHHHHHHHHHHhhC
Q 003194 153 ETFLKQLRSAANKIVGLKSIAAYRSGLEINPHVTKKDAEEGLAEDLRSGK--P----VRITNKSLIDYIFISSLEVAQFL 226 (840)
Q Consensus 153 ~al~~~l~~~~~~~vgfks~~~y~~Gl~~~p~~~~~ea~~~~~r~l~~~~--~----~~~~~~~l~d~~l~~l~e~~~e~ 226 (840)
+.+.+-...++++++||.+ ++|. +++.|.++++|++++.+ + ........++..++|+|+.|+++
T Consensus 87 d~~a~~~~~~pdrf~~~~~---------v~p~-~~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~ 156 (293)
T COG2159 87 DDLAALAAEYPDRFVGFAR---------VDPR-DPEAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEEL 156 (293)
T ss_pred HHHHHHHhhCCcceeeeee---------eCCC-chHHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHc
Confidence 4455555667899999998 7666 55778899999998642 1 23455667788899999999999
Q ss_pred CCcEEEeeCCCCCCCCcCC--cChhhhHHHHhhcCCCCcEEEEeCCC--CchHHHHHHHHHhCCEeEecccccCCCCcHH
Q 003194 227 DLPLQIHTGFGDKDLDLRL--SNPLHLRAILEDKRFSKCRFVLLHAS--YPFSKEASYLAYVYPQVYLDFGLAIPKLSVQ 302 (840)
Q Consensus 227 glPvq~H~G~gd~~~~~~~--~~P~~L~~l~~~~~~P~l~~VllH~g--~p~~~e~~~la~~~pNVyld~s~~~~~~~~~ 302 (840)
|+||++|+|.++.+..... ++|++++++++ +||+++||++|+| +||..++.+++..+||||+|+|.+.+.+..
T Consensus 157 gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~--~fP~l~IVl~H~G~~~p~~~~a~~~a~~~~nvy~d~s~~~~~~~~- 233 (293)
T COG2159 157 GVPVVIHTGAGPGGAGLEKGHSDPLYLDDVAR--KFPELKIVLGHMGEDYPWELEAIELAYAHPNVYLDTSGVRPKYFA- 233 (293)
T ss_pred CCCEEEEeCCCCCCcccccCCCCchHHHHHHH--HCCCCcEEEEecCCCCchhHHHHHHHHhCCCceeeeeccccccCC-
Confidence 9999999999876665555 89999999999 9999999999999 999999999999999999999999776532
Q ss_pred HHHHHHHHHHHHCCCCcEEEecCCCCCcccchhhHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhcCCC
Q 003194 303 GMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (840)
Q Consensus 303 g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~~ 382 (840)
...++.+.+ .+.+||||||| ||... ...+.+... .++.++ +.+++||++||+|||+++.
T Consensus 234 --~~~~~~~~~-~~~dkilFGSD---~P~~~--~~~~l~~~~-----------~l~l~~--e~k~kiL~~NA~rll~l~~ 292 (293)
T COG2159 234 --PPLLEFLKE-LGPDKILFGSD---YPAIH--PEVWLAELD-----------ELGLSE--EVKEKILGENAARLLGLDP 292 (293)
T ss_pred --hHHHHHHHh-cccCeEEecCC---CCCcC--HHHHHHHHH-----------hcCCCH--HHHHHHHHHhHHHHhCcCC
Confidence 257777778 88899999999 88533 222332222 233333 7999999999999999864
No 13
>COG3968 Uncharacterized protein related to glutamine synthetase [General function prediction only]
Probab=99.80 E-value=2e-18 Score=184.47 Aligned_cols=233 Identities=25% Similarity=0.330 Sum_probs=174.5
Q ss_pred ceeeeeeeeEEEEEeecccCCCCC-----------cccCC---CCCcccCCccccchHHHHHHHHHHHhCCCceeeeccC
Q 003194 523 LVLNAGFEIEFYLLKSVLREGKEE-----------WVPID---FTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAE 588 (840)
Q Consensus 523 ~~~~~g~E~EF~l~~~~~~~~~~~-----------~~p~~---~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E 588 (840)
+-..+|.|+||||.+....+..+. .+|.. ..+||...+ +++..|+.++-..|.++||++..-|.|
T Consensus 214 V~s~~GaEQEYFlvd~~~~~~RpDLi~tGRTLFGa~ppkGQEldDHYFGaip-eRV~~FM~Dve~~LyaLGIpaKTrHNE 292 (724)
T COG3968 214 VFSNVGAEQEYFLVDKKSYDERPDLIFTGRTLFGAPPPKGQELDDHYFGAIP-ERVSAFMKDVEKELYALGIPAKTRHNE 292 (724)
T ss_pred hccCCCccceeEEechhhcccCcceeeechhhcCCCCCCCccccchhccccH-HHHHHHHHHHHHHHHHcCCcccccccc
Confidence 347899999999998642222221 11211 235766544 668899999999999999999999999
Q ss_pred CCCCceEEecCcchHHHHHhHHHHHHHHHHHHHHHcCCeeEecccccCCCCCcccccccccc-cCCCcccccCCCC-CcC
Q 003194 589 AGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKFALDDIGSGSHVHLSLW-QNGENVFMASDSS-SKH 666 (840)
Q Consensus 589 ~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~Gl~ATFmpKP~~~~~GsG~H~H~Sl~-~~g~n~f~~~d~~-~~~ 666 (840)
++||||||.--+.++.-|+|+-.+..+++|.+|++||+.+-.+-|||.+.+|||-|+|+|+- ++|.|+..++|.. +..
T Consensus 293 VAPgQfEIApife~~N~A~DhqQL~M~vLk~tA~KhGlVCLLHEKPFAGiNGSGKH~NWSmGtd~g~NLLdPgD~PhdN~ 372 (724)
T COG3968 293 VAPGQFEIAPIFESGNLATDHQQLVMEVLKKTALKHGLVCLLHEKPFAGINGSGKHNNWSMGTDDGLNLLDPGDMPHDNK 372 (724)
T ss_pred cCCCceeeeeeeccccccchHHHHHHHHHHHHHHhcceEEEeecCCccCcCCCCCccccccccCCCcccCCCCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999996 5788998765521 111
Q ss_pred CCcHHHHHHHHHHHHhHHhhhhhcCCCCCccccCCCCCccC-c--ccc--------------------------------
Q 003194 667 GMSSVGEKFMAGVLHHLSSILAFTAPVPNSYDRIQPNTWSG-A--YQC-------------------------------- 711 (840)
Q Consensus 667 ~lS~~~~~fiaGlL~h~~al~a~~~Pt~nSY~Rl~~~~~ap-~--~~~-------------------------------- 711 (840)
+.--.+..-|-++-++ .+++-+...+...-.||..+ +|| . .+.
T Consensus 373 QFL~Fc~AvIkaVdkY-~~LlRa~~a~AsNDhRLGAN-EAPPAI~SVflGdqLedifEqi~~G~~~ssk~~g~mdLg~~v 450 (724)
T COG3968 373 QFLLFCTAVIKAVDKY-ADLLRASAANASNDHRLGAN-EAPPAIISVFLGDQLEDIFEQIEKGKATSSKGNGKMDLGISV 450 (724)
T ss_pred eeehhhHHHHHHHHHH-HHHHHHHHhccCCccccccC-CCCcceeEeeccchHHHHHHHHhcCCCcccccCcccccchhh
Confidence 1111222333444443 34555555565556788764 344 1 122
Q ss_pred -------ccccCCCCcccccCCCCCCCCccceEEEcCCCCC---CCHHHHHHHHHHHHHHhhhc-CC
Q 003194 712 -------WGKENREAPLRTACPPGVKDGVVSNFELKSFDGC---ANPHLGLAAIIASGIDGLRR-LC 767 (840)
Q Consensus 712 -------WG~~NR~~~iRv~~~~~~~~~~~~~~E~R~~d~~---aNPYLalAailaAGl~GI~~-l~ 767 (840)
-|..||+.|+-.. | ++||+|.++++ +-|-.+|.+++|-.+.-|.. |+
T Consensus 451 lP~v~kdAgDRNRTSPFAFT---G------NkFEFRavgSSqSvs~P~tVLN~~vAesl~~i~drLe 508 (724)
T COG3968 451 LPAVEKDAGDRNRTSPFAFT---G------NKFEFRAVGSSQSVSEPNTVLNVIVAESLSEIADRLE 508 (724)
T ss_pred ccccccccccccCCCCceec---c------ceeeEecCCcccccccchHHHHHHHHHHHHHHHHHHH
Confidence 3347888888874 2 58999999876 67999999999999988877 65
No 14
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=99.77 E-value=4.3e-19 Score=190.07 Aligned_cols=202 Identities=25% Similarity=0.317 Sum_probs=134.6
Q ss_pred HHHHHHHHhhccccccceeeecccCCCCCCCCCCHHHHHHHHHHHHhCCC--CC----cCCchhhhhHHHH-HHHHHHhh
Q 003194 153 ETFLKQLRSAANKIVGLKSIAAYRSGLEINPHVTKKDAEEGLAEDLRSGK--PV----RITNKSLIDYIFI-SSLEVAQF 225 (840)
Q Consensus 153 ~al~~~l~~~~~~~vgfks~~~y~~Gl~~~p~~~~~ea~~~~~r~l~~~~--~~----~~~~~~l~d~~l~-~l~e~~~e 225 (840)
+.+.+.....+++++++.. +.+. ..+++.+++++++...+ +. ........+..+. ++|+.|++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~l~~~~~~~g~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~ 128 (273)
T PF04909_consen 59 DWLVELAAKHPDRFIGFAA---------IPPP-DPEDAVEELERALQELGFRGVKLHPDLGGFDPDDPRLDDPIFEAAEE 128 (273)
T ss_dssp HHHHHHHHHSTTTEEEEEE---------ETTT-SHHHHHHHHHHHHHTTTESEEEEESSETTCCTTSGHCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEE---------ecCC-CchhHHHHHHHhccccceeeeEecCCCCccccccHHHHHHHHHHHHh
Confidence 3334444455677777765 3333 57889999999995431 11 1223334455555 99999999
Q ss_pred CCCcEEEeeC-CCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCCCc--hHHHHHHHHHhCCEeEecccccCCC---C
Q 003194 226 LDLPLQIHTG-FGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYP--FSKEASYLAYVYPQVYLDFGLAIPK---L 299 (840)
Q Consensus 226 ~glPvq~H~G-~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p--~~~e~~~la~~~pNVyld~s~~~~~---~ 299 (840)
+|+||.+|+| .+..+.......|..+.++++ +||+++||+.|+|.+ +..++..++.++||||+|+|+..+. .
T Consensus 129 ~~~pv~~H~g~~~~~~~~~~~~~~~~~~~~~~--~~P~l~ii~~H~G~~~~~~~~~~~l~~~~~nvy~d~s~~~~~~~~~ 206 (273)
T PF04909_consen 129 LGLPVLIHTGMTGFPDAPSDPADPEELEELLE--RFPDLRIILAHLGGPFPWWEEALRLLDRFPNVYVDLSGIPPFWYFW 206 (273)
T ss_dssp HT-EEEEEESHTHHHHHHHHHHHHHHHTTHHH--HSTTSEEEESGGGTTHHHHHHHHHHHHHHTTEEEECHSHHSSEEEE
T ss_pred hccceeeeccccchhhhhHHHHHHHHHHHHHH--HhcCCeEEEecCcccchhHHHHHHHHHhCCcccccccccccccccC
Confidence 9999999988 222112233456778889999 899999999999999 8889999999999999999996321 1
Q ss_pred cHHHHHHHHHHHHHHCCCCcEEEecCCCCCcccchhhHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhc
Q 003194 300 SVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYK 379 (840)
Q Consensus 300 ~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~ 379 (840)
........+..+++..+.+||||||| ||....... ........... .++. ++.++|+++||+|+|+
T Consensus 207 ~~~~~~~~l~~~~~~~g~drilfGSD---~P~~~~~~~--~~~~~~~~~~~-----~l~~----~~~~~i~~~NA~rl~~ 272 (273)
T PF04909_consen 207 PPSFDRPFLRRAVDEFGPDRILFGSD---YPHPDGASP--YEYIWEAYFLD-----DLSE----EEREKILYDNARRLYG 272 (273)
T ss_dssp TTHHCHHHHHHHHHHHTGGGEEEE-----TTSSTHHHH--HHHHHHHHHHH-----HSSH----HHHHHHHTHHHHHHHT
T ss_pred cccccHHHHHHHHHHhCCceEEecCC---CCCCCcccc--HHHHHHhhhcc-----CCCH----HHHHHHHhHhHHHHcC
Confidence 11233457888888999999999999 664322111 11111100000 1453 7899999999999998
Q ss_pred C
Q 003194 380 I 380 (840)
Q Consensus 380 l 380 (840)
|
T Consensus 273 l 273 (273)
T PF04909_consen 273 L 273 (273)
T ss_dssp C
T ss_pred c
Confidence 6
No 15
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=99.44 E-value=1.2e-12 Score=140.43 Aligned_cols=140 Identities=12% Similarity=0.070 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCCCch---------HHHHHHHH
Q 003194 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF---------SKEASYLA 282 (840)
Q Consensus 212 ~d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~---------~~e~~~la 282 (840)
++..+.++++.|+++|+|+++|+|... -..+..+++ +| +++||+.|+|.|+ +.....++
T Consensus 108 ~~~~~~~~~~~~~~~gl~v~~~~~~~~---------l~~l~~l~~--~~-~l~ivldH~G~p~~~~~~~~~~~~~~l~~l 175 (263)
T cd01311 108 NKDELDEIAKRAAELGWHVQVYFDAVD---------LPALLPFLQ--KL-PVAVVIDHFGRPDVTKGVDGAEFAALLKLI 175 (263)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEeCHhh---------HHHHHHHHH--HC-CCCEEEECCCCCCCCCCCCCHhHHHHHHHH
Confidence 666788999999999999999997431 124677888 78 9999999999765 23445556
Q ss_pred HhCCEeEecccccCCC----CcHHHHHHHHHHHHHHCCCCcEEEecCCCCCcccchh---hHHHHHHHHHHHHhhhhcCC
Q 003194 283 YVYPQVYLDFGLAIPK----LSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFL---GAKRAREVVFSVLRDTCIDE 355 (840)
Q Consensus 283 ~~~pNVyld~s~~~~~----~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~---~~~~~R~~l~~~l~~~v~~g 355 (840)
.+||||+++|++... .....+...++.+++. |.+|+||||| ||.+... ....+...+. .+.+
T Consensus 176 -~~pNV~~k~Sg~~~~~~~~~~~~~~~~~~~~~~~~-g~dRlmfGSD---~P~~~~~~~~~~~~~~~~~~-~~~~----- 244 (263)
T cd01311 176 -EEGNVWVKVSGPYRLSVKQEAYADVIAFARQIVAA-APDRLVWGTD---WPHPRLREPDPMPDDGALLR-LIPS----- 244 (263)
T ss_pred -hcCCEEEEecchhhcCCCCCCHHHHHHHHHHHHHh-CCCcEEEeCC---CCCCCccccCCCCCHHHHHH-HHHH-----
Confidence 899999999986421 1123466678888877 8899999999 7754211 0011222222 1222
Q ss_pred CCChhHHHHHHHHHHHHhHHHH
Q 003194 356 DLSVGEAIEVAKDIFALNAAQF 377 (840)
Q Consensus 356 ~l~~~ea~~~~~~Il~~NA~rl 377 (840)
.++.+ +.+++|+++||+||
T Consensus 245 ~~~~~---~~~~~~~~~n~~~~ 263 (263)
T cd01311 245 WAPDA---QLQRKNLVDNPARL 263 (263)
T ss_pred HcCCH---HHHHHHHHhChhhC
Confidence 23422 67999999999985
No 16
>PF03951 Gln-synt_N: Glutamine synthetase, beta-Grasp domain; InterPro: IPR008147 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) has, currently, only been found in Bacteroides fragilis and in Butyrivibrio fibrisolvens. It is a hexamer of identical chains. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006542 glutamine biosynthetic process, 0006807 nitrogen compound metabolic process; PDB: 3NG0_A 2D3A_A 2D3C_E 2D3B_H 1LGR_C 2GLS_I 1F1H_B 1FPY_C 2LGS_D 1F52_A ....
Probab=99.39 E-value=3.5e-13 Score=118.40 Aligned_cols=80 Identities=20% Similarity=0.434 Sum_probs=65.4
Q ss_pred CccEEEEEEecCCCCcceEEEechhhhhHHhhcccccccccc-cccccCCCCCCCCCCCCCCcEEEEEecCCceeccCCc
Q 003194 407 DVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACM-GMTSAVDGPADGTNLSGTGEIRLMPDLSTRWRIPWQK 485 (840)
Q Consensus 407 ~i~~v~l~~~D~~G~~R~k~vp~~~~~~~~~~~g~~~~~~~~-~~~~~~d~~~~~~~~~~~~d~~l~PD~~T~~~~Pw~~ 485 (840)
+|+||+++|+|+.|.+|++++|++++.+.+.+.|++|++++. ++.. ...+|++|+||++|++++||.+
T Consensus 1 ~V~~v~~~f~D~~G~~~~~~i~~~~~~~~~~~~g~~fDGSSi~g~~~-----------~~~SDm~l~Pd~~t~~~~P~~~ 69 (84)
T PF03951_consen 1 NVKFVDLQFTDLFGRLKHVTIPASEFDEDALEDGIGFDGSSIRGFAT-----------IEESDMYLKPDPSTFFIDPWRP 69 (84)
T ss_dssp T-EEEEEEEE-TTSSEEEEEEEGCCESCSGGGS-EEEECCGTTTSSB-----------SCCEEEEEEEEGGEEEESTTTS
T ss_pred CeEEEEEEEEcCCCCcceEEEEHHHCCchHhhCCCCCCcccCcCccc-----------CCCCCEEEecCcccEEECccCC
Confidence 589999999999999999999999994434578999999887 5542 1347999999999999999996
Q ss_pred c---ccceeeeccCC
Q 003194 486 Q---EEMIMADMHLK 497 (840)
Q Consensus 486 ~---~a~v~~d~~~~ 497 (840)
+ +++|+||++++
T Consensus 70 ~~~~~~~v~cdv~~P 84 (84)
T PF03951_consen 70 DPGKTARVICDVYDP 84 (84)
T ss_dssp TT-TEEEEEEEEEST
T ss_pred CCceEEEEEEEeECc
Confidence 4 69999999874
No 17
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=99.20 E-value=6.9e-10 Score=116.45 Aligned_cols=147 Identities=19% Similarity=0.242 Sum_probs=102.1
Q ss_pred hhhhhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCCCc---------hHHHHH
Q 003194 209 KSLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYP---------FSKEAS 279 (840)
Q Consensus 209 ~~l~d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p---------~~~e~~ 279 (840)
+.+....+...++..+++||++.+++-.. ..| .+-.++. .+|+++||+-|+|.| |...+.
T Consensus 119 ~~~~a~~~r~~~~rL~~~gl~fdl~~~~~--------ql~-~~i~l~~--~~Pd~~~VldH~G~p~~~~~~~~~w~~~m~ 187 (279)
T COG3618 119 GLFEAPAWRANVERLAKLGLHFDLQVDPH--------QLP-DLIPLAL--KAPDVNFVLDHCGRPDIKINLEDPWKAALA 187 (279)
T ss_pred cchhhHHHHHHHHHHHhcCCeEEEEeChh--------hhH-HHHHHHh--hCCCCCEEeccCCCCCccccccCHHHHHHH
Confidence 33444567777888999999999997421 122 2334555 699999999999876 333334
Q ss_pred HHHHhCCEeEecccccCCCC----cHHHHHHHHHHHHHHCCCCcEEEecCCCCCcccchhhHHHHHHHHHHHHhhhhcCC
Q 003194 280 YLAYVYPQVYLDFGLAIPKL----SVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDE 355 (840)
Q Consensus 280 ~la~~~pNVyld~s~~~~~~----~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~R~~l~~~l~~~v~~g 355 (840)
.|+ ..||||+.+|+...+. .....+.+.+.+++.+|.+|+||||| ||-+...+. +-.. .+...+++..
T Consensus 188 ~la-~~pNv~~KlSG~~~~~~~~w~~~~v~p~~e~~i~~fg~dR~vfGSd---wPv~~l~~~--~~~~-~~~~~~~v~~- 259 (279)
T COG3618 188 RLA-RRPNVWAKLSGVYAYSDESWTVEDVRPYVEELIELFGWDRFVFGSD---WPVTSLESD--FASW-VAATRELVPG- 259 (279)
T ss_pred HHH-hCCCeEEEEeeecccccCCCCHHHHHHHHHHHHHhcCccceEecCC---CCcccccCC--hHHH-HHHHHHHcCC-
Confidence 444 7899999999965322 23456778999999999999999999 886654431 1111 1233344321
Q ss_pred CCChhHHHHHHHHHHHHhHHHHhcC
Q 003194 356 DLSVGEAIEVAKDIFALNAAQFYKI 380 (840)
Q Consensus 356 ~l~~~ea~~~~~~Il~~NA~rly~l 380 (840)
+. +++.+|+++||+|+|++
T Consensus 260 --~~----~er~~i~~~NA~rly~~ 278 (279)
T COG3618 260 --DA----AERARILVDNARRLYRL 278 (279)
T ss_pred --CH----HHHHHHHhhCHHHHhCC
Confidence 22 68999999999999986
No 18
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=98.98 E-value=2.5e-09 Score=113.49 Aligned_cols=147 Identities=21% Similarity=0.271 Sum_probs=92.9
Q ss_pred hhhhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCC-CcEEEEeCCCCchHHHHHHHHHhCCEe
Q 003194 210 SLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFS-KCRFVLLHASYPFSKEASYLAYVYPQV 288 (840)
Q Consensus 210 ~l~d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P-~l~~VllH~g~p~~~e~~~la~~~pNV 288 (840)
...+..+.+++++|+++|+||++|++.+ |..+.++++ +|| ..++|+ |+.......+..++. +|+
T Consensus 104 ~~q~~~~~~~~~~a~e~~~pv~iH~~~~----------~~~~~~l~~--~~~~~~~~i~-H~~~~~~~~~~~~~~--~g~ 168 (251)
T cd01310 104 EVQKEVFRAQLELAKELNLPVVIHSRDA----------HEDVLEILK--EYGPPKRGVF-HCFSGSAEEAKELLD--LGF 168 (251)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEeeCc----------hHHHHHHHH--hcCCCCCEEE-EccCCCHHHHHHHHH--cCC
Confidence 3456778999999999999999999842 456778888 787 555555 653233333444443 899
Q ss_pred EecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCCCCcccchhhHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 003194 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKD 368 (840)
Q Consensus 289 yld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~ 368 (840)
|++++.+..... ...++.+++..+.+||||+||++..+...+.+.......+.+++..+.+...++. +.+.+
T Consensus 169 ~~~~~~~~~~~~----~~~~~~~~~~~~~dril~~TD~p~~~~~~~~~~~~~~~~~~~~~~~la~~~gl~~----e~~~~ 240 (251)
T cd01310 169 YISISGIVTFKN----ANELREVVKEIPLERLLLETDSPYLAPVPFRGKRNEPAYVKHVAEKIAELKGISV----EEVAE 240 (251)
T ss_pred EEEeeeeeccCC----CHHHHHHHHhCChHHEEEcccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHCcCH----HHHHH
Confidence 999998763221 1256778889999999999995443211000000001111122222222235664 67899
Q ss_pred HHHHhHHHHhc
Q 003194 369 IFALNAAQFYK 379 (840)
Q Consensus 369 Il~~NA~rly~ 379 (840)
|+++||+|+|+
T Consensus 241 ~~~~N~~~ll~ 251 (251)
T cd01310 241 VTTENAKRLFG 251 (251)
T ss_pred HHHHHHHHHhC
Confidence 99999999985
No 19
>KOG4245 consensus Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=98.83 E-value=1e-08 Score=100.43 Aligned_cols=199 Identities=21% Similarity=0.283 Sum_probs=131.5
Q ss_pred HHHHHHHhhccccccceeeecccCCCCCCCCCCHHHHHHHHHHHHhCC------CCCcCCchhhhhHHHHHHHHHHhhCC
Q 003194 154 TFLKQLRSAANKIVGLKSIAAYRSGLEINPHVTKKDAEEGLAEDLRSG------KPVRITNKSLIDYIFISSLEVAQFLD 227 (840)
Q Consensus 154 al~~~l~~~~~~~vgfks~~~y~~Gl~~~p~~~~~ea~~~~~r~l~~~------~~~~~~~~~l~d~~l~~l~e~~~e~g 227 (840)
-|.+....+++|+||+-+ + |.-.++.|.++++||+++. -++++..+.++..-++|+|..|+++.
T Consensus 55 dl~ae~~kfp~r~v~lgt---------l-pmn~~e~avee~~rcvk~lg~~g~eigshv~e~~ld~~d~~ply~~~e~l~ 124 (297)
T KOG4245|consen 55 DLAAECQKFPDRFVGLGT---------L-PMNAPELAVEEMERCVKELGFKGFEIGSHVAEKDLDAQDFFPLYAAAEELK 124 (297)
T ss_pred HHHHHHHhcchhccccCc---------c-CCcCHHHHHHHHHHHHHHcCCCceeeccccccccCchHHHhHHHHHHHhhe
Confidence 355566778999998775 3 4547899999999999753 24688899999999999999999999
Q ss_pred CcEEEeeCCC---CCCCC-----cCCcCh---------hhhHHHHhhcCCCCcEEEEeCCC--CchHHHHH--------H
Q 003194 228 LPLQIHTGFG---DKDLD-----LRLSNP---------LHLRAILEDKRFSKCRFVLLHAS--YPFSKEAS--------Y 280 (840)
Q Consensus 228 lPvq~H~G~g---d~~~~-----~~~~~P---------~~L~~l~~~~~~P~l~~VllH~g--~p~~~e~~--------~ 280 (840)
..+.+|..-- |...+ .-...| ..+.+++. .||++++..+|.| ||+.+... .
T Consensus 125 ~~lfvhpwdmhmwdgrl~kywlpwlvgmpaeta~aics~img~i~~--~fpklklcfahggga~p~~~grishg~n~rpd 202 (297)
T KOG4245|consen 125 CSLFVHPWDMHMWDGRLAKYWLPWLVGMPAETAIAICSMIMGGIFE--KFPKLKLCFAHGGGAFPFIRGRISHGFNMRPD 202 (297)
T ss_pred eeEEecchhhcccccchHhhhhHHHhCCchHHHHHHHHHHHhhHHH--hCchheeeeecCCcccceeeeeeccCccCCcc
Confidence 9999997541 11110 001122 25677888 8999999999985 77765221 1
Q ss_pred H-HH---hCCEeEecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCCCCcccchhhHHHHHHHHHHHHhhhhcCCC
Q 003194 281 L-AY---VYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDED 356 (840)
Q Consensus 281 l-a~---~~pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~R~~l~~~l~~~v~~g~ 356 (840)
| |+ .-||-|.++-|.-...+ -...++-+++..|-++|+.||| |+|| ++...- .+++.++ .+
T Consensus 203 lca~~~~~~p~k~~g~~~tdalvh---dp~alell~~tigkd~iilgtd-ypfp----lgele~----gkliee~---~~ 267 (297)
T KOG4245|consen 203 LCAGDCKMAPKKLDGLFWTDALVH---DPKALELLIDTIGKDHIILGTD-YPFP----LGELEP----GKLIEEM---EE 267 (297)
T ss_pred hhcCcCCCChhhhccchhhhhhhc---CcHHHHHHHHhhccceEEeccC-CCCc----Cccccc----chHHHhh---cc
Confidence 1 11 12455554433211111 1246778889999999999999 3344 222111 1222332 23
Q ss_pred CChhHHHHHHHHHHHHhHHHHhcCCCC
Q 003194 357 LSVGEAIEVAKDIFALNAAQFYKINLG 383 (840)
Q Consensus 357 l~~~ea~~~~~~Il~~NA~rly~l~~~ 383 (840)
++. +.++++.++||..+++++..
T Consensus 268 f~a----~~ke~l~~~nal~~l~id~n 290 (297)
T KOG4245|consen 268 FDA----EDKEDLKAGNALAFLDIDEN 290 (297)
T ss_pred cch----hhHHHhhhccchhhcccchh
Confidence 443 68999999999999998753
No 20
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=98.55 E-value=3.4e-07 Score=97.20 Aligned_cols=143 Identities=19% Similarity=0.191 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCEeEec
Q 003194 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLD 291 (840)
Q Consensus 212 ~d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~pNVyld 291 (840)
....+.+.+++|+++|+||.+|++.. +..+.++++ ++|....++.|+.......+..+.. .|+|++
T Consensus 106 q~~~~~~~~~~a~~~~~pv~iH~~~~----------~~~~~~~l~--~~~~~~~~i~H~~~~~~~~~~~~~~--~g~~~~ 171 (252)
T TIGR00010 106 QEEVFRAQLQLAEELNLPVIIHARDA----------EEDVLDILR--EEKPKVGGVLHCFTGDAELAKKLLD--LGFYIS 171 (252)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEecCc----------cHHHHHHHH--hcCCCCCEEEEccCCCHHHHHHHHH--CCCeEe
Confidence 34567888999999999999999732 233556676 5643445555873111122223322 499999
Q ss_pred ccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCCCCcccchh----hHHHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 003194 292 FGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFL----GAKRAREVVFSVLRDTCIDEDLSVGEAIEVAK 367 (840)
Q Consensus 292 ~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~----~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~ 367 (840)
++.+..... ...+++++...|.+||||+||++..+...+. .....++.+. .+.. ...++. +.+.
T Consensus 172 ~~~~~~~~~----~~~~~~~i~~~~~dril~~TD~p~~~~~~~~~~~~~p~~i~~~~~-~~a~---~~g~~~----~~~~ 239 (252)
T TIGR00010 172 ISGIVTFKN----AKSLREVVRKIPLERLLVETDSPYLAPVPYRGKRNEPAFVRYTVE-AIAE---IKGMDV----EELA 239 (252)
T ss_pred eceeEecCC----cHHHHHHHHhCCHHHeEecccCCCCCCCCCCCCCCCChhHHHHHH-HHHH---HhCcCH----HHHH
Confidence 997543211 1356677778899999999996532200000 0011222111 1111 124564 5799
Q ss_pred HHHHHhHHHHhcC
Q 003194 368 DIFALNAAQFYKI 380 (840)
Q Consensus 368 ~Il~~NA~rly~l 380 (840)
+++++|++|+|++
T Consensus 240 ~~~~~N~~~~~~~ 252 (252)
T TIGR00010 240 QITTKNAKRLFGL 252 (252)
T ss_pred HHHHHHHHHHhCc
Confidence 9999999999985
No 21
>TIGR02050 gshA_cyan_rel uncharacterized enzyme. This family represents a division of a larger family, the other branch of which is predicted to act as glutamate--cysteine ligase (the first of two enzymes in glutathione biosynthesis) in the cyanobacteria. Species containing this protein, however, are generally not believe to make glutathione, and the function is unknown.
Probab=98.34 E-value=1.1e-05 Score=87.78 Aligned_cols=198 Identities=23% Similarity=0.283 Sum_probs=119.0
Q ss_pred eeeeeeEEEEEeecccCCCCCcccCCCCCcccCCccccch-HHHHHHHHHHHhCCCceeeeccCCCCCceEEecCcc-hH
Q 003194 526 NAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVS-PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHT-VA 603 (840)
Q Consensus 526 ~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~-~~ 603 (840)
.+|+|.||+|.++. .+ .+. .... .++.++... .| ..+++|...+|.||+..|+ +.
T Consensus 1 t~GvE~E~~lvD~~--t~----~~~-----------~~~~~~~l~~~~~~---~~---~~~~~El~~~qiEi~t~p~~~~ 57 (287)
T TIGR02050 1 TLGVEEELLLVDPH--TY----DLA-----------ASASAVLIGACREK---IG---AGFKHELFESQVELATPVCTTL 57 (287)
T ss_pred CceeeeeeeeEcCC--cc----CcC-----------ccChHHHHHhhhhh---cc---cccChhhhccEEEecCCCcCCH
Confidence 37999999999872 11 010 1112 444443322 22 3488999999999999997 67
Q ss_pred HHHHhHHHHHHHHHHHHHHHcCCeeE---ecccccC-----------------------CCCCcccccccccccCCCccc
Q 003194 604 AKAADNLIFTREVLRAVARKHGLLAT---FVPKFAL-----------------------DDIGSGSHVHLSLWQNGENVF 657 (840)
Q Consensus 604 l~aaD~~~~~r~~ik~vA~~~Gl~AT---FmpKP~~-----------------------~~~GsG~H~H~Sl~~~g~n~f 657 (840)
-++.+.+...+..++++|+++|+... ++|.... ...-+|+|+|+++-+..
T Consensus 58 ~~l~~~l~~~~~~l~~~a~~~g~~l~~~G~hP~~~~~~~~~~~~~RY~~m~~~~g~~~~~~~~~g~hVhv~v~d~~---- 133 (287)
T TIGR02050 58 AEAAAQIRAVRARLVQAASDHGLRICGAGTHPFARWRRQEVADNPRYQRLLERYGYVARQQLVFGLHVHVGVPSPD---- 133 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCccCCCCcHHHHHHHHHHHHHHHHhHceeeEEEEeCCCCHH----
Confidence 78899999999999999999998743 3443210 11247899999995211
Q ss_pred ccCCCCCcCCCcHHHHHHHHHHHHhHHhhhhhcCCCC---------CccccCC----CCC-ccCcccccc----------
Q 003194 658 MASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVP---------NSYDRIQ----PNT-WSGAYQCWG---------- 713 (840)
Q Consensus 658 ~~~d~~~~~~lS~~~~~fiaGlL~h~~al~a~~~Pt~---------nSY~Rl~----~~~-~ap~~~~WG---------- 713 (840)
..-..+-.+..++|.+.|+++.++ .|||... |.. --|..-+|.
T Consensus 134 -------------~~i~~~n~l~~~lP~llALsANSPf~~G~dtg~~s~R~~i~~~~p~~G~p~~f~~~~~y~~~~~~l~ 200 (287)
T TIGR02050 134 -------------DAVAVLNRLLPWLPHLLALSASSPFWQGFDTGYASYRRNIFQAWPTAGLPPAFGSWDAFEAYFADLL 200 (287)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHhCCccccCcCCchHHHHHHHHHhCCCCCCCCcCCCHHHHHHHHHHHH
Confidence 123344456667777777766543 2333111 111 011333442
Q ss_pred ----ccCCCC---cccccCCCCCCCCccceEEEcCCCCCCC--HHHHHHHHHHHHHHhhhc-CCCCC
Q 003194 714 ----KENREA---PLRTACPPGVKDGVVSNFELKSFDGCAN--PHLGLAAIIASGIDGLRR-LCLPE 770 (840)
Q Consensus 714 ----~~NR~~---~iRv~~~~~~~~~~~~~~E~R~~d~~aN--PYLalAailaAGl~GI~~-l~~~~ 770 (840)
..++.. -||... .-.++|+|++|+..+ =.+++||++.|-+..+-. .+.+.
T Consensus 201 ~~g~i~~~~~iww~vRp~~-------~~~tvE~Rv~D~~~~~~~~~~~aal~~~Lv~~~~~~~~~~~ 260 (287)
T TIGR02050 201 ETGVIDDDGDLWWDIRPSP-------HFGTVEVRVADTCLNLEHAVAIAALIRALVEWLLREWPAPF 260 (287)
T ss_pred HcCCcCCCCeeEEEeccCC-------CCCCeeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHhHhcCC
Confidence 122222 255321 124899999997654 366777777777766665 44443
No 22
>PRK13517 carboxylate-amine ligase; Provisional
Probab=98.13 E-value=3.4e-05 Score=87.06 Aligned_cols=132 Identities=25% Similarity=0.255 Sum_probs=90.6
Q ss_pred eeeeeeeeEEEEEeecccCCCCCcccCCCCCcccCCccccchHHHHHHHHHHHhCCCceeeeccCCCCCceEEecCcc-h
Q 003194 524 VLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHT-V 602 (840)
Q Consensus 524 ~~~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~-~ 602 (840)
.+.+|+|.||+++++. .+. + .+...++.+.+... -.-..+..|...+|.||+.+|+ +
T Consensus 10 ~~tiGvE~E~~lVD~~--t~~----~---------------~~~~~~vl~~~~~~-~~~~~i~~El~~~qiEi~t~p~~~ 67 (373)
T PRK13517 10 RPTLGVEWELLLVDPE--TGE----L---------------SPRAAEVLAAAGED-DEGPHLQKELLRNTVEVVTGVCDT 67 (373)
T ss_pred CCeeEeeeeEeeECCC--cCC----c---------------CccHHHHHHhcccc-cCCCcccccccCCEEEECCCCCCC
Confidence 4599999999999861 111 0 01123333333321 0124677899999999999997 6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHcCCeeE---ecccccCC-----------------------CCCcccccccccccCCCcc
Q 003194 603 AAKAADNLIFTREVLRAVARKHGLLAT---FVPKFALD-----------------------DIGSGSHVHLSLWQNGENV 656 (840)
Q Consensus 603 ~l~aaD~~~~~r~~ik~vA~~~Gl~AT---FmpKP~~~-----------------------~~GsG~H~H~Sl~~~g~n~ 656 (840)
.-++.+.+...+..++++|+++|+..- .+|..... ..-+|+|+|+++-+.
T Consensus 68 ~~el~~~L~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~~~~~RY~~m~~~~~~~~~~~~~~g~hVhv~v~~~---- 143 (373)
T PRK13517 68 VAEARADLRRTRALARRAAERRGARLAAAGTHPFSDWSEQPVTDKPRYAELIERTQWWARQQLICGVHVHVGVPSR---- 143 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEeeCCCCCCCCccCCCCCchHHHHHHHHHHHHHHhheeeeeEEEeCCCCH----
Confidence 778899999999999999999997643 34442111 136799999999421
Q ss_pred cccCCCCCcCCCcHHHHHHHHHHHHhHHhhhhhcCCCC
Q 003194 657 FMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVP 694 (840)
Q Consensus 657 f~~~d~~~~~~lS~~~~~fiaGlL~h~~al~a~~~Pt~ 694 (840)
+.+-.++..+..++|-+.|+++.++
T Consensus 144 -------------~~~i~~~n~l~~~lP~llALsAnSP 168 (373)
T PRK13517 144 -------------EKVVPVINRLRPWLPHLLALSANSP 168 (373)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 1234566677888888888887665
No 23
>PRK13515 carboxylate-amine ligase; Provisional
Probab=98.02 E-value=6.5e-05 Score=84.76 Aligned_cols=190 Identities=21% Similarity=0.242 Sum_probs=116.7
Q ss_pred eeeeeeeeEEEEEeecccCCCCCcccCCCCCcccCCccccchHHHHHHHHHHHhCCCceeeeccCCCCCceEEecCcc-h
Q 003194 524 VLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHT-V 602 (840)
Q Consensus 524 ~~~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~-~ 602 (840)
.+.+|+|.||++.++. .+. + . ... .++...+... .-..+.+|..-+|.||+.+|+ +
T Consensus 5 ~~t~GvE~E~~lVD~~--t~~----l---------~--~~~----~~~l~~~~~~--~~~~i~~El~~~qiEi~T~p~~~ 61 (371)
T PRK13515 5 EFTLGIEEEYLLVDPE--TRD----L---------R--SYP----DALVEACRDT--LGEQVKPEMHQSQVEVGTPVCAT 61 (371)
T ss_pred CCcceEeEeEEEecCC--ccc----c---------c--ccH----HHHHHhchhh--cCCccCcchhccEEEECCcccCC
Confidence 4689999999999872 111 0 0 011 2333323221 123788999999999999997 6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHcCCeeE---eccccc-----------------------CCCCCcccccccccccCCCcc
Q 003194 603 AAKAADNLIFTREVLRAVARKHGLLAT---FVPKFA-----------------------LDDIGSGSHVHLSLWQNGENV 656 (840)
Q Consensus 603 ~l~aaD~~~~~r~~ik~vA~~~Gl~AT---FmpKP~-----------------------~~~~GsG~H~H~Sl~~~g~n~ 656 (840)
.-++.+.+...+..+.++|+++|+... .+|... ....-+|+|+|+++-+.
T Consensus 62 ~~el~~~L~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~t~~~RY~~m~~~~~~~~~~~~~~g~HVhv~~~d~---- 137 (371)
T PRK13515 62 IAEAREELGRLRQRVAQLAAQFGLRIIAAGTHPFADWRRQEITPKERYAQLVEDLQDVARRNLICGLHVHVGIPDR---- 137 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCccCCCCCchHHHHHHHHHHHHHHhhceeeeEEEeCCCCH----
Confidence 677899999999999999999999863 334311 01134599999998421
Q ss_pred cccCCCCCcCCCcHHHHHHHHHHHHhHHhhhhhcCCCCCccccCCCCC---ccC-ccccccccCCC--------------
Q 003194 657 FMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNSYDRIQPNT---WSG-AYQCWGKENRE-------------- 718 (840)
Q Consensus 657 f~~~d~~~~~~lS~~~~~fiaGlL~h~~al~a~~~Pt~nSY~Rl~~~~---~ap-~~~~WG~~NR~-------------- 718 (840)
+..-.++..+.-.+|-+.|+++.++ | ..|. |+. ....|+.-+|.
T Consensus 138 -------------e~~~~~~n~~~~~lP~llALsanSP--f---~~G~dtg~~S~R~~~~~~~p~~g~p~~~~~~~~y~~ 199 (371)
T PRK13515 138 -------------EDRIDLMNQVRYFLPHLLALSTSSP--F---WGGRDTGLKSYRSAVFDEFPRTGLPPAFPSWAEYQR 199 (371)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHcCCc--c---ccCCCCchhhhHHHHHhhCCCCCCCCCCCCHHHHHH
Confidence 1244556677777777777765543 1 1111 111 11223333332
Q ss_pred ------------------CcccccCCCCCCCCccceEEEcCCCCCCCHH--HHHHHHHHHHHHhhhc
Q 003194 719 ------------------APLRTACPPGVKDGVVSNFELKSFDGCANPH--LGLAAIIASGIDGLRR 765 (840)
Q Consensus 719 ------------------~~iRv~~~~~~~~~~~~~~E~R~~d~~aNPY--LalAailaAGl~GI~~ 765 (840)
-.+|. . ..-.++|+|++|...+.- +++||++.+-+..+.+
T Consensus 200 ~~~~l~~~g~i~~~~~~~~~vRp-~------~~~~tiEiRv~D~~p~~~~~~a~aal~~~lv~~l~~ 259 (371)
T PRK13515 200 YVALLVKTGCIDDAKKIWWDLRP-S------PRFPTLELRICDVCTRLDDALALAALFQALVRKLYR 259 (371)
T ss_pred HHHHHHhcCCcCCCCeEEEEecc-C------CCCCCeeEecCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 12232 1 112479999999866555 7777777777777654
No 24
>PRK13516 gamma-glutamyl:cysteine ligase; Provisional
Probab=97.89 E-value=8.3e-05 Score=83.54 Aligned_cols=131 Identities=20% Similarity=0.215 Sum_probs=85.9
Q ss_pred eeeeeeeeEEEEEeecccCCCCCcccCCCCCcccCCccccchHHHHHHHHHHHhCCCceeeeccCCCCCceEEecCcc-h
Q 003194 524 VLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHT-V 602 (840)
Q Consensus 524 ~~~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~-~ 602 (840)
.+.+|+|.||+|.++. .+. + .....++++ .+.... --+.+.+|-..+|.|++.+|+ +
T Consensus 11 ~~t~GvE~E~~LVD~~--t~~----~-----------~~~~~~vl~----~~~~~~-~~~~v~~El~~~qIEi~T~p~~~ 68 (373)
T PRK13516 11 PFTLGVELELQLVNPH--DYD----L-----------TQDSSDLLR----AVKNQP-TAGEIKPEITESMIEIATGVCRD 68 (373)
T ss_pred CCeeEEEEEEEeEcCC--CcC----c-----------CccHHHHHH----hccccc-cccccChhhhCceEEEcCCCCCC
Confidence 4599999999999872 110 1 011223333 232211 123578899999999999998 6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHcCCeeE---ecc-----------cc----------cCC--CCCcccccccccccCCCcc
Q 003194 603 AAKAADNLIFTREVLRAVARKHGLLAT---FVP-----------KF----------ALD--DIGSGSHVHLSLWQNGENV 656 (840)
Q Consensus 603 ~l~aaD~~~~~r~~ik~vA~~~Gl~AT---Fmp-----------KP----------~~~--~~GsG~H~H~Sl~~~g~n~ 656 (840)
.-++.+.+...+..++++|+++|+... .+| || ... ..-.|+|||+.+-+.
T Consensus 69 ~~el~~eL~~~r~~l~~~A~~~G~~lva~GthP~~~~~~~~it~~~RY~~l~~~~~~~~~~~~i~G~HVHvg~~d~---- 144 (373)
T PRK13516 69 IDQALGQLSAMRDVLVQAADKLNIGICGGGTHPFQQWQRQRICDNPRFQYLSELYGYLAKQFTVFGQHVHIGCPSG---- 144 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEeecCCCCCCccccCCCCcHHHHHHHHHhhhhhhhheeeeeEEEeCCCCH----
Confidence 677899999999999999999999742 222 22 000 024589999987321
Q ss_pred cccCCCCCcCCCcHHHHHHHHHHHHhHHhhhhhcCCC
Q 003194 657 FMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPV 693 (840)
Q Consensus 657 f~~~d~~~~~~lS~~~~~fiaGlL~h~~al~a~~~Pt 693 (840)
+.+-..+-.+..++|.+.|+++.+
T Consensus 145 -------------~~av~~~~~l~~~lP~llALsAsS 168 (373)
T PRK13516 145 -------------DDALYLLHGLSRYVPHFIALSASS 168 (373)
T ss_pred -------------HHHHHHHHHHHhHhHHHHHHHhCC
Confidence 123455556777778888887765
No 25
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=97.74 E-value=0.0011 Score=70.20 Aligned_cols=215 Identities=19% Similarity=0.255 Sum_probs=119.8
Q ss_pred cccHHHHHHHHHHHHHhh-c--cccccceeeecccCCCCCCCCCCHHHHHHHHHHH-HhCCC----C-CcCCchhhhh-H
Q 003194 145 IWTLDVFIETFLKQLRSA-A--NKIVGLKSIAAYRSGLEINPHVTKKDAEEGLAED-LRSGK----P-VRITNKSLID-Y 214 (840)
Q Consensus 145 ~~~~~~~~~al~~~l~~~-~--~~~vgfks~~~y~~Gl~~~p~~~~~ea~~~~~r~-l~~~~----~-~~~~~~~l~d-~ 214 (840)
+.|.++ .-++++||-.. + .+|.-+-+ ||= ....++++..+++.+. +.+-+ + ..-++....| .
T Consensus 47 vtt~~~-a~aYr~rIl~a~p~~~~F~PLMt--lYL-----td~~~peel~~a~~~g~i~a~KlYPaGaTTNS~~GV~~~~ 118 (344)
T COG0418 47 VTTVAD-ALAYRERILKAVPAGHRFTPLMT--LYL-----TDSTTPEELEEAKAKGVIRAVKLYPAGATTNSDSGVTDIE 118 (344)
T ss_pred cccHHH-HHHHHHHHHHhCcCCCCCceeEE--EEe-----cCCCCHHHHHHHHhcCcEEEEEeccCCccccCcCCcCcHH
Confidence 445554 45677777664 2 23444444 552 2224678887776663 33211 1 1111111222 2
Q ss_pred HHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChh----hhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCC-EeE
Q 003194 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPL----HLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYP-QVY 289 (840)
Q Consensus 215 ~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~----~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~p-NVy 289 (840)
.+.|++|..++.|+|+.+|--..+...|..-.... .|..+.+ +||++|||+-|... .+++.+..... ||+
T Consensus 119 ~~~pvle~Mq~~gmpLlvHGEvt~~~vDifdrE~~Fi~~vl~pl~~--~fP~LKIV~EHiTT---~dav~~v~~~~~nla 193 (344)
T COG0418 119 KIYPVLEAMQKIGMPLLVHGEVTDAEVDIFDREAAFIESVLEPLRQ--RFPKLKIVLEHITT---KDAVEYVKDANNNLA 193 (344)
T ss_pred HHHHHHHHHHHcCCeEEEecccCCccccchhhHHHHHHHHHHHHHh--hCCcceEEEEEecc---HHHHHHHHhcCccee
Confidence 56899999999999999998766655553333333 4555666 99999999999953 34454544444 366
Q ss_pred ecccc---------cC-----CCC------cHHHHHHHHHHHHHHCCCCcEEEecCCCCCcccc----------hhhHHH
Q 003194 290 LDFGL---------AI-----PKL------SVQGMISSIKELLELAPTKKVMFSTDAYASPETY----------FLGAKR 339 (840)
Q Consensus 290 ld~s~---------~~-----~~~------~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~----------~~~~~~ 339 (840)
..+.. |+ |.. -+.--+..|+++ ...|..|+.|||||-++|... |.. -.
T Consensus 194 ATIT~hHL~~nrnd~l~Ggi~Ph~fClPilKr~~hr~AL~~a-a~sg~~kfFlGtDSAPH~~~~Ke~~cgcAG~fsa-p~ 271 (344)
T COG0418 194 ATITPHHLLLNRNDMLVGGIRPHLFCLPILKRETHREALREA-ATSGHPKFFLGTDSAPHARSRKESACGCAGIFSA-PF 271 (344)
T ss_pred eEeehhheeeehhhhhcCCCCcceeeeccccchhhHHHHHHH-HhcCCCcEEecCCCCCCccccccccccccccccc-Hh
Confidence 55532 11 111 011112234433 245667999999997766321 110 01
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhcCCCC
Q 003194 340 AREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINLG 383 (840)
Q Consensus 340 ~R~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~~~ 383 (840)
.-..++.++.+. + |.+-.+..+..|..++|+|+..
T Consensus 272 al~~~AevFE~~---n------aL~~LeaF~S~nGp~fY~lp~n 306 (344)
T COG0418 272 ALPLYAEVFEEE---N------ALDNLEAFASDNGPKFYGLPRN 306 (344)
T ss_pred HHHHHHHHHHHh---c------HHHHHHHHHhhcCcceecccCC
Confidence 122333333221 1 3468899999999999999743
No 26
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=97.74 E-value=0.00042 Score=75.55 Aligned_cols=149 Identities=17% Similarity=0.220 Sum_probs=84.3
Q ss_pred HHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCC-CchHHHHHHHHHhCCEeEeccc
Q 003194 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHAS-YPFSKEASYLAYVYPQVYLDFG 293 (840)
Q Consensus 215 ~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g-~p~~~e~~~la~~~pNVyld~s 293 (840)
.|....+++.++|+||.+|++.+. .+....+. ++++..++..++++.|+. ..-...+..++. . ++|++++
T Consensus 137 ~f~~~~~lA~~~~~Pv~iH~~~~~------~~~~~~l~-~l~~~g~~~~~~vi~H~~~~~~~~~~~~~~~-~-G~~i~~~ 207 (293)
T cd00530 137 VLRAAARAQKETGVPISTHTQAGL------TMGLEQLR-ILEEEGVDPSKVVIGHLDRNDDPDYLLKIAA-L-GAYLEFD 207 (293)
T ss_pred HHHHHHHHHHHHCCeEEEcCCCCc------cccHHHHH-HHHHcCCChhheEEeCCCCCCCHHHHHHHHh-C-CCEEEeC
Confidence 345567889999999999997531 01112233 333224555678999994 222233333433 2 5777776
Q ss_pred ccCCC-----CcHHHHHHHHHHHHHHCCCCcEEEecCCCCCccc--chhhHHHHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 003194 294 LAIPK-----LSVQGMISSIKELLELAPTKKVMFSTDAYASPET--YFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVA 366 (840)
Q Consensus 294 ~~~~~-----~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~--~~~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~ 366 (840)
..... .......+.++++++.++.+|||++||++..+.. .+.+.. ...+-..+....+...++. +.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~ill~TD~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~----e~i 281 (293)
T cd00530 208 GIGKDKIFGYPSDETRADAVKALIDEGYGDRLLLSHDVFRKSYLEKRYGGHG--YDYILTRFIPRLRERGVTE----EQL 281 (293)
T ss_pred CCCcccccCCCCHHHHHHHHHHHHHCCCcCCEEEeCCcCchhhhhhccCCCC--hHHHHHHHHHHHHHcCCCH----HHH
Confidence 54321 1111234578899999999999999997543210 000000 0111111122222335564 579
Q ss_pred HHHHHHhHHHHh
Q 003194 367 KDIFALNAAQFY 378 (840)
Q Consensus 367 ~~Il~~NA~rly 378 (840)
.+++.+|++|+|
T Consensus 282 ~~~~~~N~~~lf 293 (293)
T cd00530 282 DTILVENPARFL 293 (293)
T ss_pred HHHHHHCHHHhC
Confidence 999999999987
No 27
>PRK10812 putative DNAse; Provisional
Probab=97.74 E-value=0.00022 Score=76.76 Aligned_cols=142 Identities=20% Similarity=0.287 Sum_probs=83.2
Q ss_pred HHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCEeEecccc
Q 003194 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGL 294 (840)
Q Consensus 215 ~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~pNVyld~s~ 294 (840)
.|...+++|.++|+||.+|+--. ... +-++++....+..++| .|+-..-...+..+.. .++|+++++
T Consensus 112 vf~~ql~lA~e~~~Pv~iH~r~a---------~~~-~l~iL~~~~~~~~~~v-~H~fsG~~~~a~~~~~--~G~~is~~g 178 (265)
T PRK10812 112 SFRHHIQIGRELNKPVIVHTRDA---------RAD-TLAILREEKVTDCGGV-LHCFTEDRETAGKLLD--LGFYISFSG 178 (265)
T ss_pred HHHHHHHHHHHhCCCeEEEeeCc---------hHH-HHHHHHhhcCCCCCEE-EEeecCCHHHHHHHHH--CCCEEEECe
Confidence 45566788999999999998532 112 2334442122333555 6871111122233332 378999887
Q ss_pred cCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCCCC-cccchhh----HHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 003194 295 AIPKLSVQGMISSIKELLELAPTKKVMFSTDAYAS-PETYFLG----AKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDI 369 (840)
Q Consensus 295 ~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~-Pe~~~~~----~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~I 369 (840)
...+-. ...+++++..+|.+|+|..||+++. |.. +.+ ..+...++ +.+.+. ..++. +.+.++
T Consensus 179 ~~t~~~----~~~~~~~~~~ipldrlLlETD~P~~~p~~-~~g~~n~P~~i~~v~-~~ia~l---~g~~~----eei~~~ 245 (265)
T PRK10812 179 IVTFRN----AEQLRDAARYVPLDRLLVETDSPYLAPVP-HRGKENQPAMVRDVA-EYMAVL---KGVSV----EELAQV 245 (265)
T ss_pred eeecCc----cHHHHHHHHhCChhhEEEecCCCCCCCcC-CCCCCCCcHHHHHHH-HHHHHH---hCCCH----HHHHHH
Confidence 653211 2467888899999999999998654 211 111 11222221 222222 24564 578899
Q ss_pred HHHhHHHHhcCCC
Q 003194 370 FALNAAQFYKINL 382 (840)
Q Consensus 370 l~~NA~rly~l~~ 382 (840)
++.|++|+|+++.
T Consensus 246 ~~~N~~~lf~~~~ 258 (265)
T PRK10812 246 TTDNFARLFHIDA 258 (265)
T ss_pred HHHHHHHHHCCCh
Confidence 9999999999843
No 28
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=97.67 E-value=0.00023 Score=76.18 Aligned_cols=139 Identities=19% Similarity=0.258 Sum_probs=80.6
Q ss_pred HHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCC-CCchHHHHHHHHHhCCEeEeccc
Q 003194 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA-SYPFSKEASYLAYVYPQVYLDFG 293 (840)
Q Consensus 215 ~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~-g~p~~~e~~~la~~~pNVyld~s 293 (840)
.|...+++|.++++||++|+=-. .- .+-.+++....+ .+ +++|+ +.+ ..++..+.. -+.|+.++
T Consensus 115 vf~~ql~lA~~~~~Pv~iH~r~a---------~~-~~~~il~~~~~~-~~-~i~H~fsG~-~~~a~~~l~--~G~~iS~~ 179 (258)
T PRK11449 115 LLDEQLKLAKRYDLPVILHSRRT---------HD-KLAMHLKRHDLP-RT-GVVHGFSGS-LQQAERFVQ--LGYKIGVG 179 (258)
T ss_pred HHHHHHHHHHHhCCCEEEEecCc---------cH-HHHHHHHhcCCC-CC-eEEEcCCCC-HHHHHHHHH--CCCEEEeC
Confidence 45666799999999999998421 11 233455521112 23 35776 222 222333332 26889888
Q ss_pred ccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCCCCcccchhh----HHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 003194 294 LAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLG----AKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDI 369 (840)
Q Consensus 294 ~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~----~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~I 369 (840)
+++.+-. ...+++++...|.+|||+.||++..|...+.+ ..+..+.+. .+.+. -.++. +.+.++
T Consensus 180 g~it~~~----~~~~~~~~~~ipldriL~ETD~P~l~p~~~~~~~n~p~~~~~~~~-~ia~l---~~~~~----~el~~~ 247 (258)
T PRK11449 180 GTITYPR----ASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFD-VLCEL---RPEPA----DEIAEV 247 (258)
T ss_pred ccccccC----cHHHHHHHHhCChhhEEEecCCCCCCCCCCCCCCCCChHHHHHHH-HHHHH---HCcCH----HHHHHH
Confidence 8764321 13578888899999999999976544211111 112222221 11221 23443 568889
Q ss_pred HHHhHHHHhcC
Q 003194 370 FALNAAQFYKI 380 (840)
Q Consensus 370 l~~NA~rly~l 380 (840)
+++|+.++|++
T Consensus 248 ~~~N~~~lf~~ 258 (258)
T PRK11449 248 LLNNTYTLFNV 258 (258)
T ss_pred HHHHHHHHhCc
Confidence 99999999985
No 29
>PRK13518 carboxylate-amine ligase; Provisional
Probab=97.49 E-value=0.0011 Score=73.73 Aligned_cols=129 Identities=22% Similarity=0.200 Sum_probs=85.3
Q ss_pred eeeeeeEEEEEeecccCCCCCcccCCCCCcccCCccccchHHHHHHHHHHHhCCCceeeeccCCCCCceEEecCcc-hHH
Q 003194 526 NAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHT-VAA 604 (840)
Q Consensus 526 ~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~-~~l 604 (840)
.+|+|.||.|.++. +. +. . ...++++..+..... -+.+++|...+|.||+.+++ +.-
T Consensus 14 TlGvEeE~~lvD~~---~~----~~-----------~---~~~~~vl~~~~~~~~-~~~~~~El~~~qvEi~T~~~~~~~ 71 (357)
T PRK13518 14 TLGIEEEFFVVDEY---GR----PT-----------S---GTDELVYEHEPPEIL-AGRLDHELFKFVIETQTPLIEDPS 71 (357)
T ss_pred ceEEEEEEEEECCC---CC----cc-----------c---chhHHHHHhcccccC-CCcccccccCceEEEcCcCcCCHH
Confidence 79999999999872 11 10 0 011333333332111 24688999999999999998 788
Q ss_pred HHHhHHHHHHHHHHHHHHHcCCee--------------EecccccC-------CC-----CCcccccccccccCCCcccc
Q 003194 605 KAADNLIFTREVLRAVARKHGLLA--------------TFVPKFAL-------DD-----IGSGSHVHLSLWQNGENVFM 658 (840)
Q Consensus 605 ~aaD~~~~~r~~ik~vA~~~Gl~A--------------TFmpKP~~-------~~-----~GsG~H~H~Sl~~~g~n~f~ 658 (840)
++.+.+...|..+..+|+++|+.. ..+|||-- +. .-.|+|||+.+-+.+
T Consensus 72 el~~~L~~~r~~l~~aa~~~g~~l~a~GthP~~~~~~~~~t~~~RY~~m~~~~~~~~~~~~~~G~HVHVg~~d~d----- 146 (357)
T PRK13518 72 EAGAALREVRDALVDHAAAHGYRIAAAGLHPAAKWRELEHAEKPRYRSQLDRIQYPQHRNTTAGLHVHVGVDDAD----- 146 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEecCCCCCCCccccCCCCCcHHHHHHHhcccchhcceeeEEEEEeCCCCHH-----
Confidence 899999999999999999999963 33455521 01 246899999872211
Q ss_pred cCCCCCcCCCcHHHHHHHHHHHHhHHhhhhhcCCC
Q 003194 659 ASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPV 693 (840)
Q Consensus 659 ~~d~~~~~~lS~~~~~fiaGlL~h~~al~a~~~Pt 693 (840)
.+-..+-.+.-.+|.+.|+++.+
T Consensus 147 ------------~av~v~n~lr~~LP~LlALsAnS 169 (357)
T PRK13518 147 ------------KAVWIANELRWHLPILLALSANS 169 (357)
T ss_pred ------------HHHHHHHHHHhHHHHHHHHHcCC
Confidence 12222344556668888887654
No 30
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=97.44 E-value=0.00078 Score=71.65 Aligned_cols=139 Identities=24% Similarity=0.271 Sum_probs=88.0
Q ss_pred HHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCCCchH-HHHHHHHHhCCEeEeccc
Q 003194 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFS-KEASYLAYVYPQVYLDFG 293 (840)
Q Consensus 215 ~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~-~e~~~la~~~pNVyld~s 293 (840)
.|..-+++|.++++||.+|+--.. ..+-++++ +++...=.++|| |.-. .++..+. .. ..|+++|
T Consensus 113 ~F~~ql~lA~~~~lPviIH~R~A~----------~d~~~iL~--~~~~~~~gi~Hc-FsGs~e~a~~~~-d~-G~yisis 177 (256)
T COG0084 113 VFEAQLELAKELNLPVIIHTRDAH----------EDTLEILK--EEGAPVGGVLHC-FSGSAEEARKLL-DL-GFYISIS 177 (256)
T ss_pred HHHHHHHHHHHcCCCEEEEccccH----------HHHHHHHH--hcCCCCCEEEEc-cCCCHHHHHHHH-Hc-CeEEEEC
Confidence 455567899999999999984221 12445666 454334455788 2212 2222222 22 3999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCCCCcccchhh----HHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 003194 294 LAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLG----AKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDI 369 (840)
Q Consensus 294 ~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~----~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~I 369 (840)
++..+-. ...+++++...|.+|+|.-||++..+...+.+ ..+.+ .....+.++- .++. +.+..+
T Consensus 178 G~itfk~----a~~~~ev~~~iPldrLL~ETDsPyl~P~p~rGkrNeP~~v~-~v~~~iAelk---~~~~----eeva~~ 245 (256)
T COG0084 178 GIVTFKN----AEKLREVARELPLDRLLLETDAPYLAPVPYRGKRNEPAYVR-HVAEKLAELK---GISA----EEVAEI 245 (256)
T ss_pred ceeecCC----cHHHHHHHHhCCHhHeEeccCCCCCCCcCCCCCCCCchHHH-HHHHHHHHHh---CCCH----HHHHHH
Confidence 9886531 23688899999999999999987653222222 11222 2334444442 4565 578889
Q ss_pred HHHhHHHHhcC
Q 003194 370 FALNAAQFYKI 380 (840)
Q Consensus 370 l~~NA~rly~l 380 (840)
...|+.+||++
T Consensus 246 t~~N~~~lf~~ 256 (256)
T COG0084 246 TTENAKRLFGL 256 (256)
T ss_pred HHHHHHHHhcC
Confidence 99999999985
No 31
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=97.43 E-value=0.00072 Score=72.38 Aligned_cols=139 Identities=25% Similarity=0.319 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCC-CCchHHHHHHHHHhCCEeEec
Q 003194 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA-SYPFSKEASYLAYVYPQVYLD 291 (840)
Q Consensus 213 d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~-g~p~~~e~~~la~~~pNVyld 291 (840)
...|...+++|.++++||++|+-- +... +-+++++-..|+. -++.|+ +.+. .++..+.. .++|+.
T Consensus 110 ~~vF~~ql~lA~~~~~pv~iH~r~---------a~~~-~l~il~~~~~~~~-~~i~H~f~g~~-~~~~~~~~--~g~~~S 175 (255)
T PF01026_consen 110 EEVFERQLELAKELNLPVSIHCRK---------AHEE-LLEILKEYGPPNL-RVIFHCFSGSP-EEAKKFLD--LGCYFS 175 (255)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEES---------HHHH-HHHHHHHTTGGTS-EEEETT--S-H-HHHHHHHH--TTEEEE
T ss_pred HHHHHHHHHHHHHhCCcEEEecCC---------cHHH-HHHHHHhccccce-eEEEecCCCCH-HHHHHHHh--cCceEE
Confidence 335666679999999999999842 1222 3345553223344 555676 2222 12222222 289999
Q ss_pred ccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCCCC-c-----ccchhhHHHHHHHHHHHHhhhhcCCCCChhHHHHH
Q 003194 292 FGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYAS-P-----ETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEV 365 (840)
Q Consensus 292 ~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~-P-----e~~~~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~ 365 (840)
++.....-. .+..++++...|.+|||.-||+++. | ....+. ...+.+ +.+.+ -..++. +.
T Consensus 176 ~~~~~~~~~----~~~~~~~~~~ip~drillETD~P~~~~~~~~~~~~~p~--~i~~~~-~~la~---~~~~~~----e~ 241 (255)
T PF01026_consen 176 FSGAITFKN----SKKVRELIKAIPLDRILLETDAPYLAPDPYRGKPNEPS--NIPKVA-QALAE---IKGISL----EE 241 (255)
T ss_dssp EEGGGGSTT----SHHHHHHHHHS-GGGEEEE-BTTSSECTTSTTSE--GG--GHHHHH-HHHHH---HHTSTH----HH
T ss_pred ecccccccc----cHHHHHHHhcCChhhEEEcCCCCcCCccccCCCCCChH--HHHHHH-HHHHH---HcCCCH----HH
Confidence 998754321 2346788889999999999997431 1 001111 122222 11122 124665 67
Q ss_pred HHHHHHHhHHHHhc
Q 003194 366 AKDIFALNAAQFYK 379 (840)
Q Consensus 366 ~~~Il~~NA~rly~ 379 (840)
+..+.++|++|+||
T Consensus 242 ~~~~~~~N~~r~f~ 255 (255)
T PF01026_consen 242 LAQIIYENAKRLFG 255 (255)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 89999999999996
No 32
>PRK09875 putative hydrolase; Provisional
Probab=97.22 E-value=0.012 Score=64.01 Aligned_cols=148 Identities=14% Similarity=0.084 Sum_probs=82.6
Q ss_pred HHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCCCchH-HHHHHHHHhCCEeEecccccC
Q 003194 218 SSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFS-KEASYLAYVYPQVYLDFGLAI 296 (840)
Q Consensus 218 ~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~-~e~~~la~~~pNVyld~s~~~ 296 (840)
...+...+.|.||.+|++.+.. -...++ ++++...+--++|+.|+..... .....++..=-.|-+|+-+.-
T Consensus 143 Aaa~a~~~TG~pi~~Ht~~~~~-------g~e~l~-il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~~g~~ 214 (292)
T PRK09875 143 AAALAHNQTGRPISTHTSFSTM-------GLEQLA-LLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKN 214 (292)
T ss_pred HHHHHHHHHCCcEEEcCCCccc-------hHHHHH-HHHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCEEEeccCCCc
Confidence 3345567899999999986531 122344 5553344556999999954332 222344432223444432221
Q ss_pred CCCcHHHHHHHHHHHHHHCCCCcEEEecCCCCC-cccchhhHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHH
Q 003194 297 PKLSVQGMISSIKELLELAPTKKVMFSTDAYAS-PETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAA 375 (840)
Q Consensus 297 ~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~-Pe~~~~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~ 375 (840)
...+.....+.+..+++.+=.+|||.|+|...- +...|.+ .-+..++.+++..+.+.| ++. +.+++|+.+|.+
T Consensus 215 ~~~pd~~r~~~i~~L~~~Gy~drilLS~D~~~~~~~~~~gg-~G~~~i~~~~ip~L~~~G-vse----~~I~~m~~~NP~ 288 (292)
T PRK09875 215 SYYPDEKRIAMLHALRDRGLLNRVMLSMDITRRSHLKANGG-YGYDYLLTTFIPQLRQSG-FSQ----ADVDVMLRENPS 288 (292)
T ss_pred ccCCHHHHHHHHHHHHhcCCCCeEEEeCCCCCcccccccCC-CChhHHHHHHHHHHHHcC-CCH----HHHHHHHHHCHH
Confidence 112112334566666666657999999994211 1111111 112334445555555554 553 789999999999
Q ss_pred HHhc
Q 003194 376 QFYK 379 (840)
Q Consensus 376 rly~ 379 (840)
|+|.
T Consensus 289 r~~~ 292 (292)
T PRK09875 289 QFFQ 292 (292)
T ss_pred HHhC
Confidence 9984
No 33
>PRK10425 DNase TatD; Provisional
Probab=97.09 E-value=0.0035 Score=67.13 Aligned_cols=141 Identities=18% Similarity=0.207 Sum_probs=81.1
Q ss_pred HHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCC-CCchHHHHHHHHHhCCEeEeccc
Q 003194 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA-SYPFSKEASYLAYVYPQVYLDFG 293 (840)
Q Consensus 215 ~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~-g~p~~~e~~~la~~~pNVyld~s 293 (840)
.|...+++|.++++||.+|+=-. . ..+-++++. ..|+.+=++.|+ +.+ ..++..+.. .+.|++++
T Consensus 109 vF~~ql~lA~~~~~Pv~iH~r~a---------~-~~~l~iL~~-~~~~~~~~i~H~fsG~-~~~~~~~l~--~G~~~si~ 174 (258)
T PRK10425 109 AFVAQLAIAAELNMPVFMHCRDA---------H-ERFMALLEP-WLDKLPGAVLHCFTGT-REEMQACLA--RGLYIGIT 174 (258)
T ss_pred HHHHHHHHHHHhCCCeEEEEeCc---------h-HHHHHHHHH-hccCCCCeEEEecCCC-HHHHHHHHH--CCCEEEEC
Confidence 45556789999999999998411 1 123344552 123332234698 212 122333332 37899988
Q ss_pred ccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCCCC-cccch-------hhHHHHHHHHHHHHhhhhcCCCCChhHHHHH
Q 003194 294 LAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYAS-PETYF-------LGAKRAREVVFSVLRDTCIDEDLSVGEAIEV 365 (840)
Q Consensus 294 ~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~-Pe~~~-------~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~ 365 (840)
+.+... +. ...+++++...|.+|||.-||+++. |..+. ....+...++ ..+++. -.++. +.
T Consensus 175 g~i~~~-~~--~~~~~~~~~~ipldrlLlETDaP~l~P~~~~~~~~~~~n~P~~i~~v~-~~iA~l---~~~~~----~~ 243 (258)
T PRK10425 175 GWVCDE-RR--GLELRELLPLIPAERLLLETDAPYLLPRDLTPKPASRRNEPAFLPHIL-QRIAHW---RGEDA----AW 243 (258)
T ss_pred ceeecc-cc--cHHHHHHHHhCChHHEEEeccCCCCCCCCcCCCCCCCCCCcHHHHHHH-HHHHHH---HCcCH----HH
Confidence 865321 11 1367888899999999999998753 31110 0011222222 222221 24564 57
Q ss_pred HHHHHHHhHHHHhcC
Q 003194 366 AKDIFALNAAQFYKI 380 (840)
Q Consensus 366 ~~~Il~~NA~rly~l 380 (840)
+..+.+.|+.++|++
T Consensus 244 v~~~~~~N~~~lf~~ 258 (258)
T PRK10425 244 LAATTDANARTLFGL 258 (258)
T ss_pred HHHHHHHHHHHHhCc
Confidence 888999999999985
No 34
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=97.04 E-value=0.0062 Score=67.86 Aligned_cols=156 Identities=18% Similarity=0.191 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCCCCCCCc---CCcChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCC-Ee
Q 003194 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDL---RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYP-QV 288 (840)
Q Consensus 213 d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~---~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~p-NV 288 (840)
+..++++++.|+++|+||.+|++...-.... .......+..+++ +||++++++.|.+.+ +...++...+ ||
T Consensus 112 ~~~l~~~~e~~~~~g~~V~vHaE~~~l~~~~~~~e~~~~~~~~~lA~--~~p~~~v~i~Hvst~---~~~~~i~~ak~~v 186 (335)
T cd01294 112 LEKIYPVLEAMQKLGMPLLVHGEVPDFKIDVLDREAKFIPVLEPLAQ--RFPKLKIVLEHITTA---DAVEYVKSCNENV 186 (335)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCcccccchhhHHHHHHHHHHHHH--HcCCCeEEEecccHH---HHHHHHHhCCCCc
Confidence 4578999999999999999999854210000 0001125667777 899999999999754 4445554444 78
Q ss_pred EecccccC--------------------CCC-cHHHHHHHHHHHHHHCCCCcEEEecCCCCCccc-----ch-hhHHHHH
Q 003194 289 YLDFGLAI--------------------PKL-SVQGMISSIKELLELAPTKKVMFSTDAYASPET-----YF-LGAKRAR 341 (840)
Q Consensus 289 yld~s~~~--------------------~~~-~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~-----~~-~~~~~~R 341 (840)
+.+++... |-+ +... +..|-+.+. -|.=.++++||--++... ++ .+.....
T Consensus 187 t~Et~ph~L~l~~~~~~~~~~g~~~k~~PPlR~~~d-~~~L~~~l~-~G~id~~i~SDHaP~~~~~K~~~~g~~Gi~~~~ 264 (335)
T cd01294 187 AATITPHHLLLTRDDLLGGGLNPHLYCKPVAKRPED-REALRKAAT-SGHPKFFLGSDSAPHPKSNKESSCGCAGIFSAP 264 (335)
T ss_pred EEEEchhHheeeHHHhcCCCCCCCeEEcCCCCCHHH-HHHHHHHHH-cCCCCeEEECCCCCCCCccccCCCCCccccCHH
Confidence 88765321 100 1111 222333332 233445689995433210 01 0111111
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhcCC
Q 003194 342 EVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (840)
Q Consensus 342 ~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (840)
..+..++ +.+. +.+++ +..-.++..|++|+|||.
T Consensus 265 ~~l~~~~-~~~~-~~l~l----~~~v~~~s~nPA~i~gl~ 298 (335)
T cd01294 265 IALPYLA-EVFE-EHNAL----DKLEAFASDNGPNFYGLP 298 (335)
T ss_pred HHHHHHH-HHHh-ccCCH----HHHHHHHHhHHHHHhCCC
Confidence 1232233 3343 47887 467778899999999983
No 35
>PLN02611 glutamate--cysteine ligase
Probab=96.94 E-value=0.0028 Score=72.95 Aligned_cols=44 Identities=23% Similarity=0.267 Sum_probs=38.5
Q ss_pred eeccCCCCCceEEecCcc-hHHHHHhHHHHHHHHHHHHHHHcCCee
Q 003194 584 QLHAEAGKGQFEIALGHT-VAAKAADNLIFTREVLRAVARKHGLLA 628 (840)
Q Consensus 584 ~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~r~~ik~vA~~~Gl~A 628 (840)
.+.=|-| ||+|++..|+ +.-++++.+...+..++.+|+++|+..
T Consensus 123 ~ITlEPG-gQiElSt~p~~si~e~~~el~~~~~~l~~~a~~~Gl~l 167 (482)
T PLN02611 123 SVSLEPG-GQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGF 167 (482)
T ss_pred ceEeccc-ceEEecccCcCCHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 3444767 9999999997 688899999999999999999999963
No 36
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=96.88 E-value=0.076 Score=54.35 Aligned_cols=143 Identities=20% Similarity=0.286 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCEeEec
Q 003194 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLD 291 (840)
Q Consensus 212 ~d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~pNVyld 291 (840)
....|..=+++|.++++|+.+||--+.. ....+..|+ ++.+..++.-.+|+-|...-... .+.. .-+|++
T Consensus 112 E~evf~~QL~LA~e~dvPviVHTPr~nK----~e~t~~ild-i~~~~~l~~~lvvIDH~N~etv~---~vld--~e~~vG 181 (254)
T COG1099 112 EKEVFREQLELARELDVPVIVHTPRRNK----KEATSKILD-ILIESGLKPSLVVIDHVNEETVD---EVLD--EEFYVG 181 (254)
T ss_pred HHHHHHHHHHHHHHcCCcEEEeCCCCcc----hhHHHHHHH-HHHHcCCChhheehhcccHHHHH---HHHh--ccceEE
Confidence 4446666789999999999999965421 112233444 44433677777888998432221 1221 235665
Q ss_pred ccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCCCCcccchhhHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH
Q 003194 292 FGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFA 371 (840)
Q Consensus 292 ~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~ 371 (840)
+.-......... ..+++...+.+|||..||.-+-+.-.+ . .-|-++ + ++...+.. +..+++++
T Consensus 182 lTvqPgKlt~~e----AveIV~ey~~~r~ilnSD~~s~~sd~l-a--vprtal-----~-m~~~gv~~----~~i~kV~~ 244 (254)
T COG1099 182 LTVQPGKLTVEE----AVEIVREYGAERIILNSDAGSAASDPL-A--VPRTAL-----E-MEERGVGE----EEIEKVVR 244 (254)
T ss_pred EEecCCcCCHHH----HHHHHHHhCcceEEEecccccccccch-h--hhHHHH-----H-HHHhcCCH----HHHHHHHH
Confidence 553322222222 234445566899999999766443211 1 122222 1 11123442 68999999
Q ss_pred HhHHHHhcCC
Q 003194 372 LNAAQFYKIN 381 (840)
Q Consensus 372 ~NA~rly~l~ 381 (840)
+||.++||+.
T Consensus 245 ~NA~~~~~l~ 254 (254)
T COG1099 245 ENALSFYGLS 254 (254)
T ss_pred HHHHHHhCcC
Confidence 9999999974
No 37
>COG2170 Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.0035 Score=67.79 Aligned_cols=155 Identities=24% Similarity=0.278 Sum_probs=98.5
Q ss_pred cCCCCCceEEecCcchH-HHHHhHHHHHHHHHHHHHHHcCCeeE--------------ecccc-cC----------C-CC
Q 003194 587 AEAGKGQFEIALGHTVA-AKAADNLIFTREVLRAVARKHGLLAT--------------FVPKF-AL----------D-DI 639 (840)
Q Consensus 587 ~E~gpGQ~Ei~l~~~~~-l~aaD~~~~~r~~ik~vA~~~Gl~AT--------------FmpKP-~~----------~-~~ 639 (840)
+|.--.+-|+..+.+.. -+|+=.+--.|..+++.|..||+... --+|| +. . ..
T Consensus 43 ~e~~e~~vE~~t~vc~~~~eA~~~~r~~r~~l~q~a~d~gL~~~~~GtHPfadw~~~~~~~~prY~~~ie~~~y~~~q~~ 122 (369)
T COG2170 43 HEITESTVELATGVCRLLAEAAAQLRALRDYLVQAASDHGLRICGGGTHPFADWRRQEVPDNPRYQRLIERTGYLGRQMT 122 (369)
T ss_pred HHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHhhhcCceecccCCCchhhhhhccCCCChhHHHHHHHhhhHHhhee
Confidence 55555677888888754 45777788899999999999999842 23344 10 0 01
Q ss_pred CcccccccccccCCCcccccCCCCCcCCCcHHHHHHHHHHHHhHHhhhhhcCCCC---------CccccCC----CCC-c
Q 003194 640 GSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVP---------NSYDRIQ----PNT-W 705 (840)
Q Consensus 640 GsG~H~H~Sl~~~g~n~f~~~d~~~~~~lS~~~~~fiaGlL~h~~al~a~~~Pt~---------nSY~Rl~----~~~-~ 705 (840)
=-|.|||+.+-+. +..-..+-+|+.++|-+.|+++.++ .|+++-. |.. -
T Consensus 123 v~G~HVHVGi~~~-----------------d~~~~~l~~l~~~~PhlLALSASSPf~~G~dTGyAS~R~~if~~~P~~g~ 185 (369)
T COG2170 123 VAGQHVHVGIPSP-----------------DDAMYLLHRLLRYVPHLLALSASSPFWQGTDTGYASARANIFSQLPTNGL 185 (369)
T ss_pred eeeEEEEecCCCH-----------------HHHHHHHHHHHhhhhHHHhhhcCCccccCccchhhhhhHhhhhhCCcCCC
Confidence 2378999888321 2355778899999999999998764 2443332 111 1
Q ss_pred cCccccccc--------------cCCC---CcccccCCCCCCCCccceEEEcCCCCCCCHH--HHHHHHHHHHHHhhhc
Q 003194 706 SGAYQCWGK--------------ENRE---APLRTACPPGVKDGVVSNFELKSFDGCANPH--LGLAAIIASGIDGLRR 765 (840)
Q Consensus 706 ap~~~~WG~--------------~NR~---~~iRv~~~~~~~~~~~~~~E~R~~d~~aNPY--LalAailaAGl~GI~~ 765 (840)
.|...+|+. +|.. -.|| |+ +.-.++|+|++|...||- ++++|++.|=+.=+-.
T Consensus 186 pp~f~sw~~f~~~~~~~~~tG~I~~~~~lwwdIR-Ps------ph~gTlEvRi~D~~~~l~~~~aivaL~~Alv~~ll~ 257 (369)
T COG2170 186 PPAFQSWAAFEAFFRDQLETGTIDSMGDLWWDIR-PS------PHLGTLEVRICDTVLNLAELLAIVALIHALVVWLLR 257 (369)
T ss_pred CccccCHHHHHHHHHHHHHhcccccccceEEecc-cC------CCCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 223345542 3322 2355 33 113589999999999985 6677777776544444
No 38
>PRK05451 dihydroorotase; Provisional
Probab=96.33 E-value=0.054 Score=60.67 Aligned_cols=79 Identities=22% Similarity=0.195 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChh-----hhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCC
Q 003194 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPL-----HLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYP 286 (840)
Q Consensus 212 ~d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~-----~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~p 286 (840)
+|..++++++.|+++|+||.+|++..+...+ ....+. .+..+++ +||+++++++|.+-+...+...-+ ..
T Consensus 116 dd~~l~~~~e~~~~~g~~V~vHaE~~~~~~~-~~~~e~~~~~~~l~~lA~--~~pg~~lhI~Hlst~~~~e~i~~a--~~ 190 (345)
T PRK05451 116 DIEKIYPVLEAMQKLGMPLLVHGEVTDPDID-IFDREAVFIDRVLEPLRR--RFPKLKIVFEHITTKDAVDYVREA--ND 190 (345)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCcccc-cccchHHHHHHHHHHHHH--hcCCCcEEEEecCcHHHHHHHHhc--CC
Confidence 6778999999999999999999986322111 111122 3566887 899999999999876554443323 45
Q ss_pred EeEeccccc
Q 003194 287 QVYLDFGLA 295 (840)
Q Consensus 287 NVyld~s~~ 295 (840)
||+.+++..
T Consensus 191 ~it~Et~ph 199 (345)
T PRK05451 191 NLAATITPH 199 (345)
T ss_pred CEEEEecHH
Confidence 888887653
No 39
>TIGR02048 gshA_cyano glutamate--cysteine ligase, cyanobacterial, putative. This family consists of proteins believed (see Copley SD, Dhillon JK, 2002) to be the glutamate--cysteine ligases of several cyanobacteria, which are known to make glutathione.
Probab=96.28 E-value=0.017 Score=65.11 Aligned_cols=94 Identities=14% Similarity=0.036 Sum_probs=69.0
Q ss_pred eeccCCCCCceEEecCcc-hHHHHHhHHHHHHHHHHHHHHHcCC-e-eE-----eccc-cc---CC--------------
Q 003194 584 QLHAEAGKGQFEIALGHT-VAAKAADNLIFTREVLRAVARKHGL-L-AT-----FVPK-FA---LD-------------- 637 (840)
Q Consensus 584 ~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~r~~ik~vA~~~Gl-~-AT-----FmpK-P~---~~-------------- 637 (840)
.+.+|.-..|.|++.+++ +.-++.+.+...|..+..+|.++|. . +. |+.- ++ .+
T Consensus 31 ~~~~El~~~~IE~~T~~~~~~~el~~~L~~~r~~l~~~a~~~g~~~l~a~gthP~~~~~~~~~~t~~~rY~~~~~~~~~~ 110 (376)
T TIGR02048 31 GFVREPDSRNVEYTTPPLNSYDRLLCGLLRPRRQLRHYLSQLGDYTLIPGSTLSLGGTDRFYRSDPQNPYHTYIEQTYGT 110 (376)
T ss_pred CCccchhhcEEEecCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeecccCCCCCCCccCcCCCcchHHHHHHHHhhh
Confidence 455688899999999997 7778999999999999999999997 3 11 1111 11 11
Q ss_pred -CCCcccccccccccCCCcccccCCCCCcCCCcHHHHHHHHHHHHhHHhhhhhcCCCC
Q 003194 638 -DIGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVP 694 (840)
Q Consensus 638 -~~GsG~H~H~Sl~~~g~n~f~~~d~~~~~~lS~~~~~fiaGlL~h~~al~a~~~Pt~ 694 (840)
..=.|+|||+.+-+. +.+-..+..|.-++|-+.|+++.++
T Consensus 111 ~~~i~G~HVHVgv~d~-----------------d~av~v~n~lr~~LP~LlALSAsSP 151 (376)
T TIGR02048 111 QVVTASVHINIGIPDP-----------------EELMRACRLVRMEAPLFLALSASSP 151 (376)
T ss_pred hheeeEEEEEcCCCCH-----------------HHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 124689999999432 2355677788889999998887764
No 40
>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6.3.2.2 from EC). This enzyme catalyses the first and rate limiting step in de novo glutathione biosynthesis. Members of this family are found in archaea, bacteria and plants. May and Leaver [] discuss the possible evolutionary origins of glutamate-cysteine ligase enzymes in different organisms and suggest that it evolved independently in different eukaryotes, from an ancestral bacterial enzyme. They also state that Arabidopsis thaliana (Mouse-ear cress) gamma-glutamylcysteine synthetase is structurally unrelated to mammalian, yeast and Escherichia coli homologues. In plants, there are separate cytosolic and chloroplast forms of the enzyme.; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process; PDB: 1R8G_A 2GWC_E 2GWD_A 1TT4_B.
Probab=96.11 E-value=0.0047 Score=67.33 Aligned_cols=96 Identities=23% Similarity=0.248 Sum_probs=65.6
Q ss_pred eeeeccCCCCCceEEecCcc-hHHHHHhHHHHHHHHHHHHHHHcCCeeE---e-----------ccccc-----------
Q 003194 582 VEQLHAEAGKGQFEIALGHT-VAAKAADNLIFTREVLRAVARKHGLLAT---F-----------VPKFA----------- 635 (840)
Q Consensus 582 ve~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~r~~ik~vA~~~Gl~AT---F-----------mpKP~----------- 635 (840)
-..+++|-..+|.||+.+|+ +.-++.+.+...+..+..+|+++|+... + .|||-
T Consensus 34 ~~~~~~E~~~~qvEi~t~p~~~~~el~~~l~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~~~~~RY~~~~~~~~~~ 113 (288)
T PF04107_consen 34 GGRVVTELPQSQVEISTPPCRSLAELREELRALRRALADAAAELGLRLVAAGTHPFARWRDQPITPKPRYRAMAEYFGRR 113 (288)
T ss_dssp SSEEEEESSTTEEEEE--SBSSHHHHHHHHHHHHHHHHHHHHCTTEEEE--SB-SS--GGGS---S-HHHHCHHHHHGGH
T ss_pred CCceeeccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEecCCCcCCCcccccCCCChhhhHHHHHHhhh
Confidence 35888999999999999997 6777899999999999999999998732 2 33320
Q ss_pred ---C-CCCCcccccccccccCCCcccccCCCCCcCCCcHHHHHHHHHHHHhHHhhhhhcCCC
Q 003194 636 ---L-DDIGSGSHVHLSLWQNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPV 693 (840)
Q Consensus 636 ---~-~~~GsG~H~H~Sl~~~g~n~f~~~d~~~~~~lS~~~~~fiaGlL~h~~al~a~~~Pt 693 (840)
. ...-+|+|+|+++-.. ++..-..+..+...+|.+.|+++.+
T Consensus 114 g~~~~~~~~~g~hvhV~v~~~----------------~e~~v~~~n~~~~~~P~llALsANS 159 (288)
T PF04107_consen 114 GVLARRMMTCGAHVHVGVDDG----------------DEAAVRVMNALRPWLPVLLALSANS 159 (288)
T ss_dssp -SGCCSHHBHEEEEEEEESSS----------------HHHHHHHHHHHHTTHHHHHHHH--B
T ss_pred hhhhhhhhhcccceEEeCCCc----------------cHHHHHHHHHHHHHhHHHHHHHcCC
Confidence 0 0123489999999321 1112255666777788888887654
No 41
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=96.05 E-value=0.045 Score=60.08 Aligned_cols=151 Identities=19% Similarity=0.117 Sum_probs=82.1
Q ss_pred HHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCC-CchHHHHHHHHHhCCEeEeccc-
Q 003194 216 FISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHAS-YPFSKEASYLAYVYPQVYLDFG- 293 (840)
Q Consensus 216 l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g-~p~~~e~~~la~~~pNVyld~s- 293 (840)
+.-...+..+.|.||.+|++.|. ..++..-+++.+.--+--+||+.|+. .+-......++..=-+|-+|.-
T Consensus 144 lrAaa~A~~~TG~pI~~H~~~g~-------~~~~e~~~il~e~Gv~~~rvvigH~D~~~D~~y~~~la~~G~~l~~D~~g 216 (308)
T PF02126_consen 144 LRAAARAHKETGAPISTHTGRGT-------RMGLEQLDILEEEGVDPSRVVIGHMDRNPDLDYHRELADRGVYLEFDTIG 216 (308)
T ss_dssp HHHHHHHHHHHT-EEEEEESTTG-------TCHHHHHHHHHHTT--GGGEEETSGGGST-HHHHHHHHHTT-EEEETTTT
T ss_pred HHHHHHHHHHhCCeEEEcCCCCC-------cCHHHHHHHHHHcCCChhHeEEeCCCCCCCHHHHHHHHhcCCEEEecCCc
Confidence 34445666788999999999762 13443344454435566899999984 2222223455544335666664
Q ss_pred ----ccCC----CCcHHH-HHHHHHHHHHHCCCCcEEEecCCCCC-cccchhhHHH-HHHHHHHHHhhhhcCCCCChhHH
Q 003194 294 ----LAIP----KLSVQG-MISSIKELLELAPTKKVMFSTDAYAS-PETYFLGAKR-AREVVFSVLRDTCIDEDLSVGEA 362 (840)
Q Consensus 294 ----~~~~----~~~~~g-~~~~l~~~le~~~~~kilfgSD~~~~-Pe~~~~~~~~-~R~~l~~~l~~~v~~g~l~~~ea 362 (840)
++.. ...++. -.+.+..+++.+=.+|||.|.|.... ....+.+.-+ +.-++.+++..+.+. .++.
T Consensus 217 ~~~~g~~~~~~~~~~~d~~ri~~l~~L~~~Gy~~qIlLS~D~~~k~~~~~~gg~g~~~~~i~~~fiP~L~~~-Gv~~--- 292 (308)
T PF02126_consen 217 REFSGKDKNPRVGYPPDEERIELLKELIEEGYADQILLSHDIGRKSRLYRYGGGGYGYIYILTRFIPRLKER-GVSE--- 292 (308)
T ss_dssp -B-TTTTTCHSCTTS-HHHHHHHHHHHHHTTTGGGEEE-HHHESEEGSSSCCHHHHTTTHHHHTHHHHHHHT-TS-H---
T ss_pred ccccCcccCccCCCCCHHHHHHHHHHHHHcCCcCcEEEeccccccccccccCCCCccHHHHHHHHHHHHHHc-CCCH---
Confidence 2211 011222 23477888888888999999995431 1111111111 111233444444444 3553
Q ss_pred HHHHHHHHHHhHHHHh
Q 003194 363 IEVAKDIFALNAAQFY 378 (840)
Q Consensus 363 ~~~~~~Il~~NA~rly 378 (840)
+..++|+-+|.+|+|
T Consensus 293 -~~i~~ilv~NP~r~l 307 (308)
T PF02126_consen 293 -EDIDKILVENPARIL 307 (308)
T ss_dssp -HHHHHHHTHHHHHHH
T ss_pred -HHHHHHHHHCHHHHc
Confidence 678999999999998
No 42
>PLN02599 dihydroorotase
Probab=95.96 E-value=0.094 Score=59.04 Aligned_cols=158 Identities=14% Similarity=0.124 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhh----HHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCEe
Q 003194 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHL----RAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288 (840)
Q Consensus 213 d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L----~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~pNV 288 (840)
+..++++++.++++|+|+.+|....+...+.......++ ..++. +||++++++.|.+.+-..++..-+..- ||
T Consensus 135 ~~~l~~~le~~~e~G~~L~vH~E~~~~~~~~~~~E~~~i~r~l~~~la--~~~g~kI~i~HiSt~~~ve~v~~ak~~-~v 211 (364)
T PLN02599 135 LGKCLPVLEEMAEQGMPLLVHGEVTDPSVDIFDREKVFIDTILAPLVQ--KLPQLKIVMEHITTMDAVEFVESCGDG-NV 211 (364)
T ss_pred HHHHHHHHHHHHhcCCEEEEecCCCcccccccccHHHHHHHHHHHHHH--hccCCeEEEEecChHHHHHHHHhccCC-CE
Confidence 468899999999999999999986322111111111223 33455 799999999999765443333322211 78
Q ss_pred EecccccCCC--------------------C-cHHHHHHHHHHHHHHCCCCcEEEecCCCCCcccchh------hHHHHH
Q 003194 289 YLDFGLAIPK--------------------L-SVQGMISSIKELLELAPTKKVMFSTDAYASPETYFL------GAKRAR 341 (840)
Q Consensus 289 yld~s~~~~~--------------------~-~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~------~~~~~R 341 (840)
+.+++...-. + ++.. +..|.+.+. -|.-+.++|||.-+++..... +....-
T Consensus 212 tae~tpHhL~l~~~~~~~~~~~~~~k~~PPlR~~~d-r~aL~~al~-~G~i~~~i~SDHaPh~~~~K~~~~g~~Gi~~~~ 289 (364)
T PLN02599 212 AATVTPQHLLLNRNALFQGGLQPHNYCLPVLKREIH-REALVKAAT-SGSKKFFLGTDSAPHPKRAKEASCGCAGIYSAP 289 (364)
T ss_pred EEEecHHHHhcCHHHHhccCCCCCeEEECCCCCHHH-HHHHHHHHH-cCCCCEEEecCCCCCChHHhcCCCCCCCcccHH
Confidence 7776532100 0 0111 122333222 121245799997655432111 111100
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhcCC
Q 003194 342 EVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (840)
Q Consensus 342 ~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (840)
-.+. ++...+.++. ++ +...+++..|.+++|||+
T Consensus 290 ~~l~-~l~~~~~~~g-~l----~~l~~~~S~npA~~~gL~ 323 (364)
T PLN02599 290 VALS-LYAKAFEEAG-AL----DKLEAFTSFNGPDFYGLP 323 (364)
T ss_pred HHHH-HHHHHHHhcC-CH----HHHHHHHhHHHHHHhCCC
Confidence 0122 2323233222 44 467888999999999994
No 43
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=95.44 E-value=0.092 Score=55.35 Aligned_cols=105 Identities=26% Similarity=0.184 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCEeEec
Q 003194 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLD 291 (840)
Q Consensus 212 ~d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~pNVyld 291 (840)
.+..+.++++.+.++|+||.+|++.+... .. .+..+++... ++.++++.|++.........++ .. |+++.
T Consensus 131 ~~~~~~~~~~~a~~~~~~i~~H~~~~~~~-----~~--~~~~~~~~~~-~~~~~~~~H~~~~~~~~~~~~~-~~-g~~~~ 200 (275)
T cd01292 131 SDESLRRVLEEARKLGLPVVIHAGELPDP-----TR--ALEDLVALLR-LGGRVVIGHVSHLDPELLELLK-EA-GVSLE 200 (275)
T ss_pred CcHHHHHHHHHHHHcCCeEEEeeCCcccC-----cc--CHHHHHHHHh-cCCCEEEECCccCCHHHHHHHH-Hc-CCeEE
Confidence 45567888999999999999999855211 11 1333444111 2679999999764333333333 32 78888
Q ss_pred ccccCCCCc--HHHHHHHHHHHHHHCCCCcEEEecCCCC
Q 003194 292 FGLAIPKLS--VQGMISSIKELLELAPTKKVMFSTDAYA 328 (840)
Q Consensus 292 ~s~~~~~~~--~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (840)
++...+... .......++.+++.+ .++++|||+..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~lgTD~~~ 237 (275)
T cd01292 201 VCPLSNYLLGRDGEGAEALRRLLELG--IRVTLGTDGPP 237 (275)
T ss_pred ECCcccccccCCcCCcccHHHHHHCC--CcEEEecCCCC
Confidence 776443221 011123456666554 79999999544
No 44
>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]
Probab=95.40 E-value=0.32 Score=52.60 Aligned_cols=95 Identities=27% Similarity=0.358 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcE-EEEeCCCCchHHHHHHHHHhCCEeEeccc
Q 003194 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCR-FVLLHASYPFSKEASYLAYVYPQVYLDFG 293 (840)
Q Consensus 215 ~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~-~VllH~g~p~~~e~~~la~~~pNVyld~s 293 (840)
.|..=++++.++.+|+.+|.-.. .-- +-++++. .-|... =|++|+=.-...++..++... +|++++
T Consensus 136 vFekQl~LA~~~~~Pl~iH~r~a---------~~d-~~eIl~~-~~~~~~~~vvvHsFtGs~e~~~~~lk~~--~yig~~ 202 (296)
T KOG3020|consen 136 VFEKQLDLAKRLKLPLFIHCRSA---------HED-LLEILKR-FLPECHKKVVVHSFTGSAEEAQKLLKLG--LYIGFT 202 (296)
T ss_pred HHHHHHHHHHHccCCeeeechhh---------hHH-HHHHHHH-hccccCCceEEEeccCCHHHHHHHHHcc--EEeccc
Confidence 34444688889999999998431 111 2233331 113333 456787222344566666555 999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCCC
Q 003194 294 LAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYA 328 (840)
Q Consensus 294 ~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (840)
+++.... .=.+++...|.+|||--||+++
T Consensus 203 g~~~k~~------e~~~vlr~iP~erlllETDsP~ 231 (296)
T KOG3020|consen 203 GCSLKTE------ENLEVLRSIPLERLLLETDSPY 231 (296)
T ss_pred ceeeech------hhHHHHhhCCHhHeeeccCCcc
Confidence 9886541 2234556899999999999755
No 45
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=95.12 E-value=0.36 Score=53.97 Aligned_cols=79 Identities=18% Similarity=0.141 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCc----CCcChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCE
Q 003194 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (840)
Q Consensus 212 ~d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~----~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~pN 287 (840)
+|..++++++.|+++|+|+.+|++......+. ..+.|..+..++. ++|++++++.|.+.+-..++..-+ ..+
T Consensus 113 dd~~l~~~~e~~~e~g~~v~vHaEd~~~~i~~~~~e~~a~~~~i~~lA~--~~~~~~~~i~H~st~~~~~~i~~a--~~~ 188 (341)
T TIGR00856 113 DIDAIMPVLEAMEKIGLPLLLHGEVTHGDIDIFDREARFIESVLEPLRQ--RFPALKVVLEHITTKDAIDYVEDG--NNR 188 (341)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeecCCCCCcccccchhhhhHHHHHHHHH--HccCCeEEEEecCcHHHHHHHHHc--CCC
Confidence 45789999999999999999999864211111 2234546667777 799999999999876554444333 224
Q ss_pred eEecccc
Q 003194 288 VYLDFGL 294 (840)
Q Consensus 288 Vyld~s~ 294 (840)
|+.+++.
T Consensus 189 vt~E~~p 195 (341)
T TIGR00856 189 LAATITP 195 (341)
T ss_pred EEEEEcH
Confidence 7766654
No 46
>TIGR01436 glu_cys_lig_pln glutamate--cysteine ligase, plant type. This model represents one of two highly dissimilar forms of glutamate--cysteine ligase (gamma-glutamylcysteine synthetase), an enzyme of glutathione biosynthesis. The other type is modeled by TIGR01434. This type is found in plants (with a probable transit peptide), root nodule and other bacteria, but not E. coli and closely related species.
Probab=94.72 E-value=0.3 Score=56.31 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=38.2
Q ss_pred eeccCCCCCceEEecCcc-hHHHHHhHHHHHHHHHHHHHHHcCCee
Q 003194 584 QLHAEAGKGQFEIALGHT-VAAKAADNLIFTREVLRAVARKHGLLA 628 (840)
Q Consensus 584 ~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~r~~ik~vA~~~Gl~A 628 (840)
.+.=|-| ||+|++..|+ +.-++++.+...+..++.+|+++|+..
T Consensus 80 ~itlEPg-gQlElS~~p~~~i~e~~~~l~~~~~~l~~~a~~~Gl~l 124 (446)
T TIGR01436 80 SISLEPG-GQFELSGAPLETIHETCDEINSHLYQVKEVAEEMGIGF 124 (446)
T ss_pred eEEEcCc-CeEEecccccCCHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 3444666 9999999998 688899999999999999999999963
No 47
>KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism]
Probab=94.13 E-value=0.2 Score=51.75 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=66.2
Q ss_pred HHHHHHHHHhhCCCcEEEeeCCCCCCCC--cCCcChhhhHH---HHhhcCCCCcEEEEeCCCCchHHHHHHHH------H
Q 003194 215 IFISSLEVAQFLDLPLQIHTGFGDKDLD--LRLSNPLHLRA---ILEDKRFSKCRFVLLHASYPFSKEASYLA------Y 283 (840)
Q Consensus 215 ~l~~l~e~~~e~glPvq~H~G~gd~~~~--~~~~~P~~L~~---l~~~~~~P~l~~VllH~g~p~~~e~~~la------~ 283 (840)
-++|+++..+|.|+|+.+|--. ++..| .-.+.+.+|-. +.. +||+++||+-||..-...++..-| .
T Consensus 118 ~fyPvf~aMqe~nm~LnvHGEv-pps~D~~Vf~aE~~Flptll~Lhq--rfP~LKivlEHcTt~dAv~~ve~a~~~sVaa 194 (344)
T KOG2902|consen 118 KFYPVFEAMQEQNMPLNVHGEV-PPSIDGHVFDAEKIFLPTLLQLHQ--RFPQLKIVLEHCTTMDAVNFVESAKEGSVAA 194 (344)
T ss_pred hhhHHHHHHHHcCceEEecCCC-CCccCCceecchhhhHHHHHHHHH--hCccceeHHHhcccHHHHHHHHhhcCCceee
Confidence 5789999999999999999765 33333 23345554443 445 899999999999432211111111 0
Q ss_pred h--CCEeEecccccCC----CCcH----HHHHHHHHHHHHHCCCCcEEEecCCCCCcc
Q 003194 284 V--YPQVYLDFGLAIP----KLSV----QGMISSIKELLELAPTKKVMFSTDAYASPE 331 (840)
Q Consensus 284 ~--~pNVyld~s~~~~----~~~~----~g~~~~l~~~le~~~~~kilfgSD~~~~Pe 331 (840)
. -.++|+..--|.. +.-+ +--++.+-.+ ...+--|+.|||||-++|.
T Consensus 195 TvTahHL~Lt~~dwqg~P~nfCkPVaK~e~dr~AlvkA-atSg~pkFFfGsDSAPHpr 251 (344)
T KOG2902|consen 195 TVTAHHLLLTRNDWQGQPHNFCKPVAKREIDREALVKA-ATSGSPKFFFGSDSAPHPR 251 (344)
T ss_pred EeehheeEEehhhhcCCCcccccccccCcccHHHHHHH-HhcCCCceeecCCCCCCcc
Confidence 0 1367776665541 1100 0112222222 2346678999999988775
No 48
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=93.14 E-value=2.3 Score=46.56 Aligned_cols=137 Identities=14% Similarity=0.106 Sum_probs=81.7
Q ss_pred HHHHHHhhCCCcE-EEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCCC----chH-----HHHHHHHHhCC-
Q 003194 218 SSLEVAQFLDLPL-QIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASY----PFS-----KEASYLAYVYP- 286 (840)
Q Consensus 218 ~l~e~~~e~glPv-q~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g~----p~~-----~e~~~la~~~p- 286 (840)
.+.+.|.++|++| .-|++. --..+++. +++.++|..|+.. +.. +++-.++..=.
T Consensus 153 ~lV~~~N~LgIiiDlSH~s~------------kt~~Dvl~---~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gGv 217 (313)
T COG2355 153 ELVREMNELGIIIDLSHLSD------------KTFWDVLD---LSKAPVVASHSNARALVDHPRNLSDEQLKAIAETGGV 217 (313)
T ss_pred HHHHHHHhcCCEEEecccCC------------ccHHHHHh---ccCCceEEecCCchhccCCCCCCCHHHHHHHHhcCCE
Confidence 4568888999988 335542 22445666 6888899888731 111 12333332211
Q ss_pred ---E---eEecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCCCCccc--chhhHHHHHHHHHHHHhhhhcCCCCC
Q 003194 287 ---Q---VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPET--YFLGAKRAREVVFSVLRDTCIDEDLS 358 (840)
Q Consensus 287 ---N---Vyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~--~~~~~~~~R~~l~~~l~~~v~~g~l~ 358 (840)
| -|+.. +--+..+.+.+.+.+..+.+.+|.+.|-+|||-...+.. -+..... +-+++.++.+.| ++
T Consensus 218 Igv~~~~~fl~~-~~~~~atldd~v~hI~h~v~~~G~dhVglGsDf~g~~~~p~gled~~~----l~~l~~~L~~~G-~~ 291 (313)
T COG2355 218 IGVNFIPAFLRP-GGAARATLDDLVRHIDHFVELVGIDHVGLGSDFDGGTGPPDGLEDVGK----LPNLTAALIERG-YS 291 (313)
T ss_pred EEEEeehhhccC-CCCCCCCHHHHHHHHHHHHHhcCcceeEecccccCCCCCchhhcChhH----HHHHHHHHHHcC-CC
Confidence 1 12222 111222456778899999999999999999994443321 1111222 234445555555 56
Q ss_pred hhHHHHHHHHHHHHhHHHHhc
Q 003194 359 VGEAIEVAKDIFALNAAQFYK 379 (840)
Q Consensus 359 ~~ea~~~~~~Il~~NA~rly~ 379 (840)
. +.+++|+++|..|+++
T Consensus 292 e----~~i~~i~~~N~lRV~~ 308 (313)
T COG2355 292 E----EEIEKIAGENWLRVLK 308 (313)
T ss_pred H----HHHHHHHHHhHHHHHH
Confidence 4 6899999999999985
No 49
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=93.06 E-value=1.6 Score=50.13 Aligned_cols=150 Identities=15% Similarity=-0.048 Sum_probs=83.2
Q ss_pred hhhhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCCCchH---------HHHHH
Q 003194 210 SLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFS---------KEASY 280 (840)
Q Consensus 210 ~l~d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~---------~e~~~ 280 (840)
...+..+..+++.++++|.++++|+-..+ .+.-..+..+++--+..+.++.+.|.+.... .+...
T Consensus 195 ~~~~~~l~~~~~~a~~~g~~v~~H~e~~~------~~e~~av~~~~~~a~~~g~r~~i~H~ss~~~~~~~~~~~~l~~i~ 268 (415)
T cd01297 195 YAGTAELVALARVAARYGGVYQTHVRYEG------DSILEALDELLRLGRETGRPVHISHLKSAGAPNWGKIDRLLALIE 268 (415)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEEECccc------ccHHHHHHHHHHHHHHhCCCEEEEEEecCCCcccchHHHHHHHHH
Confidence 45677889999999999999999995332 1111123333321123478899999853322 12222
Q ss_pred HHHh-CCEeEecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCCCCcccchhhHHHHHHHHHHHHhhhhcC-CCCC
Q 003194 281 LAYV-YPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCID-EDLS 358 (840)
Q Consensus 281 la~~-~pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~R~~l~~~l~~~v~~-g~l~ 358 (840)
-+.. -.+|+.++....... ...++.+++. ...+.+||..+++. .++.. .-.+..++..++.+ +.++
T Consensus 269 ~a~~~G~~v~~e~~p~~~~~-----~~~~~~l~~~---~~~~i~SDh~~~~~-~~~~~---~~~~~~~l~~~~~~~~~~~ 336 (415)
T cd01297 269 AARAEGLQVTADVYPYGAGS-----EDDVRRIMAH---PVVMGGSDGGALGK-PHPRS---YGDFTRVLGHYVRERKLLS 336 (415)
T ss_pred HHHHhCCcEEEEeCCCCCCc-----HHHHHHHHcC---CCceeeeCCCcCCC-CCcch---hCCHHHHHHHHhcccCCCC
Confidence 2222 247888876532111 2345555554 46679999655331 01111 01134455555543 3588
Q ss_pred hhHHHHHHHHHHHHhHHHHhcCC
Q 003194 359 VGEAIEVAKDIFALNAAQFYKIN 381 (840)
Q Consensus 359 ~~ea~~~~~~Il~~NA~rly~l~ 381 (840)
.. .+-+.+..|++++|++.
T Consensus 337 ~~----~~~~~~t~~pA~~~gl~ 355 (415)
T cd01297 337 LE----EAVRKMTGLPARVFGLA 355 (415)
T ss_pred HH----HHHHHHHHHHHHHhCCC
Confidence 64 34445567888889985
No 50
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=92.84 E-value=0.84 Score=48.19 Aligned_cols=133 Identities=22% Similarity=0.285 Sum_probs=78.8
Q ss_pred HHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCEeEecccc
Q 003194 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGL 294 (840)
Q Consensus 215 ~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~pNVyld~s~ 294 (840)
++...+++|.+.|.|||+|+-..+ ...-.-+..++++--.-..++|--|+ -|.... +.| .+
T Consensus 146 vl~~a~elA~dvdc~vqLHtes~~------~~~~~~i~~~ak~~G~~~~~VVkHha-~p~v~~-------~~~--~G--- 206 (285)
T COG1831 146 VLEYAMELAKDVDCAVQLHTESLD------EETYEEIAEMAKEAGIKPYRVVKHHA-PPLVLK-------CEE--VG--- 206 (285)
T ss_pred HHHHHHHHhhcCCCcEEEecCCCC------hHHHHHHHHHHHHhCCCcceeEeecC-Cccchh-------hhh--cC---
Confidence 556678999999999999995431 11123466666643334567777776 443321 112 11
Q ss_pred cCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCC---CCccc---chhhHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 003194 295 AIPKLSVQGMISSIKELLELAPTKKVMFSTDAY---ASPET---YFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKD 368 (840)
Q Consensus 295 ~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~---~~Pe~---~~~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~ 368 (840)
.+|.. ...++.++++++.+ .++|+-||-- ..|.. .|+-.+..+ +.+++|.++. +.+.+
T Consensus 207 i~pSV--~asr~~v~~a~~~g--~~FmmETDyIDDp~RpgavL~PktVPrr~~--------~i~~~g~~~e----e~vy~ 270 (285)
T COG1831 207 IFPSV--PASRKNVEDAAELG--PRFMMETDYIDDPRRPGAVLGPKTVPRRTR--------EILEKGDLTE----EDVYR 270 (285)
T ss_pred cCCcc--cccHHHHHHHHhcC--CceEeecccccCcccCCCcCCccchhHHHH--------HHHHhcCCcH----HHHHH
Confidence 22322 12244677777765 6999999931 11211 122222233 3445577764 68999
Q ss_pred HHHHhHHHHhcCCC
Q 003194 369 IFALNAAQFYKINL 382 (840)
Q Consensus 369 Il~~NA~rly~l~~ 382 (840)
|+-+|..++|++..
T Consensus 271 i~~E~pe~VYg~~~ 284 (285)
T COG1831 271 IHVENPERVYGIEL 284 (285)
T ss_pred HHHhCHHHHhCccC
Confidence 99999999999864
No 51
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=92.31 E-value=2.3 Score=47.41 Aligned_cols=146 Identities=14% Similarity=0.097 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhC-CEeEe
Q 003194 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVY-PQVYL 290 (840)
Q Consensus 212 ~d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~-pNVyl 290 (840)
++..+..+++.++++|+|+.+|.. ....+++ .+++++++.|.+.+-..+....+... -+|+.
T Consensus 113 ~~~~l~~~~~~~~~~g~~v~~H~E--------------r~~~la~---~~g~~l~i~Hiss~~~le~i~~ak~~g~~vt~ 175 (337)
T cd01302 113 DDGTLMRTFLEIASRGGPVMVHAE--------------RAAQLAE---EAGANVHIAHVSSGEALELIKFAKNKGVKVTC 175 (337)
T ss_pred CHHHHHHHHHHHHhcCCeEEEeHH--------------HHHHHHH---HhCCcEEEEeCCCHHHHHHHHHHHHCCCcEEE
Confidence 344566777888888999999986 2344555 37899999998766555544444332 25655
Q ss_pred cccccC------------------CCCcHHHHHHHHHHHHHHCCCCcEEEecCCCCCccc-------ch---hhHHHHHH
Q 003194 291 DFGLAI------------------PKLSVQGMISSIKELLELAPTKKVMFSTDAYASPET-------YF---LGAKRARE 342 (840)
Q Consensus 291 d~s~~~------------------~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~-------~~---~~~~~~R~ 342 (840)
+++... |-+.....+..|.+.+..+-.+ +++||.-+++.. +| .+....-.
T Consensus 176 ev~ph~L~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~id--~i~sDh~p~~~~~k~~~~~~~~a~~G~~g~e~ 253 (337)
T cd01302 176 EVCPHHLFLDESMLRLNGAWGKVNPPLRSKEDREALWEGVKNGKID--TIASDHAPHSKEEKESGKDIWKAPPGFPGLET 253 (337)
T ss_pred EcChhhheeCHHHhhCCCceEEEeCCCCCHHHHHHHHHHHhCCCCC--EEecCCCCCCHHHhccCCCcccCCCCcccHHH
Confidence 554321 1110011223444444433333 689996554310 01 01101111
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhcCC
Q 003194 343 VVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (840)
Q Consensus 343 ~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (840)
.+..++...++ +.++. +.+-+++..|++++|++.
T Consensus 254 ~l~~~~~~~~~-~~i~~----~~~~~~~s~~pA~~~gl~ 287 (337)
T cd01302 254 RLPILLTEGVK-RGLSL----ETLVEILSENPARIFGLY 287 (337)
T ss_pred HHHHHHHHHHh-cCCCH----HHHHHHHHHHHHHHcCCC
Confidence 23323333343 45776 345667778999999984
No 52
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=92.22 E-value=0.72 Score=51.08 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=42.0
Q ss_pred cHHHHHHHHHHHHHHCCCCcEEEecCCCCC---cccchhhHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHH
Q 003194 300 SVQGMISSIKELLELAPTKKVMFSTDAYAS---PETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQ 376 (840)
Q Consensus 300 ~~~g~~~~l~~~le~~~~~kilfgSD~~~~---Pe~~~~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~r 376 (840)
+.+.+.+.+..+++++|.+.|-+|||--.. |.. +.....+... ..++.+. .++. +.+++|+++|+.|
T Consensus 247 ~~~~~~~Hi~y~~~l~G~dhVgiGsDfdg~~~~~~g-l~~~~~~~~l----~~~L~~r-G~s~----~~i~kI~g~N~lR 316 (320)
T PF01244_consen 247 SLDDLVDHIDYIVDLVGIDHVGIGSDFDGIDGPPEG-LEDPSDLPNL----TEELLKR-GYSE----EDIEKILGGNFLR 316 (320)
T ss_dssp BHHHHHHHHHHHHHHH-GGGEEEE--BTTTSSHBBT-BSSGGGHHHH----HHHHHHT-TS-H----HHHHHHHTHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCeEEECcccCCCCCCCCc-cCCHHHHHHH----HHHHHHC-CCCH----HHHHHHHhHhHHH
Confidence 345677889999999999999999993221 221 1112223222 2333333 4554 6899999999999
Q ss_pred Hhc
Q 003194 377 FYK 379 (840)
Q Consensus 377 ly~ 379 (840)
+|+
T Consensus 317 v~~ 319 (320)
T PF01244_consen 317 VLR 319 (320)
T ss_dssp HHH
T ss_pred Hhc
Confidence 985
No 53
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=91.05 E-value=3.6 Score=45.34 Aligned_cols=68 Identities=13% Similarity=0.071 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHCCCCcEEEecCCCCCccc--chhhHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHH
Q 003194 301 VQGMISSIKELLELAPTKKVMFSTDAYASPET--YFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQF 377 (840)
Q Consensus 301 ~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~--~~~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rl 377 (840)
.+.+.+.+..+.+++|.+.|.+|||--..+.. .+.....+. ++..++++. .++. +.+++|+++|+.|+
T Consensus 240 ~~~~~~hi~~i~~l~G~dhVgiGsDfdg~~~~~~gl~~~~~~~----~l~~~L~~r-G~s~----~~i~~i~g~N~lRv 309 (309)
T cd01301 240 LDDVVRHIDYIVDLIGIDHVGLGSDFDGIGGTPGGLEDVSDLP----NLTAELLER-GYSE----EEIEKIAGGNFLRV 309 (309)
T ss_pred HHHHHHHHHHHHHhcCCCeEEECcccCCCCCCccccCCHHHHH----HHHHHHHHc-CCCH----HHHHHHHhhchhcC
Confidence 45677899999999999999999993222210 011222333 333344443 4564 67999999999874
No 54
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=89.41 E-value=6.5 Score=45.56 Aligned_cols=161 Identities=13% Similarity=0.076 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCC--------------CCCCc-CCcChhhh-----HHHHhhcCCCCcEEEEeCCC
Q 003194 212 IDYIFISSLEVAQFLDLPLQIHTGFGD--------------KDLDL-RLSNPLHL-----RAILEDKRFSKCRFVLLHAS 271 (840)
Q Consensus 212 ~d~~l~~l~e~~~e~glPvq~H~G~gd--------------~~~~~-~~~~P~~L-----~~l~~~~~~P~l~~VllH~g 271 (840)
.+..+..+++.++++|+++.+|.-... .+... ..+.|... ..++.--++.+.++++.|.+
T Consensus 160 s~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~~~~~~~~H~s 239 (447)
T cd01314 160 DDEELLDVLKRAKELGALVMVHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAIRLAELAGAPLYIVHVS 239 (447)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChHHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 344566677888888999999963210 00000 11234322 11211113678999999998
Q ss_pred CchHHHHHHHHHhC-CEeEecccccCCCCcHHH---------------------HHHHHHHHHHHCCCCcEEEecCCCCC
Q 003194 272 YPFSKEASYLAYVY-PQVYLDFGLAIPKLSVQG---------------------MISSIKELLELAPTKKVMFSTDAYAS 329 (840)
Q Consensus 272 ~p~~~e~~~la~~~-pNVyld~s~~~~~~~~~g---------------------~~~~l~~~le~~~~~kilfgSD~~~~ 329 (840)
.+...+....+... .+|.++++........+. .+..+.++++.+ -....|||..++
T Consensus 240 ~~~~~~~i~~~k~~g~~v~~~~~ph~l~~~~~~~~~~~~~g~~~~~~pplr~~~~~~~l~~~l~~G--~i~~igsDh~~~ 317 (447)
T cd01314 240 SKEAADEIARARKKGLPVYGETCPQYLLLDDSDYWKDWFEGAKYVCSPPLRPKEDQEALWDGLSSG--TLQTVGSDHCPF 317 (447)
T ss_pred CHHHHHHHHHHHHCCCeEEEecCchhheeCHHHhccccccccceEECCCCCChHHHHHHHHHHhCC--CeeEEECCCCCC
Confidence 76555444444333 245544443221100000 012233333322 123489996443
Q ss_pred cccchhhHHHH---------------HHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhcCCC
Q 003194 330 PETYFLGAKRA---------------REVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (840)
Q Consensus 330 Pe~~~~~~~~~---------------R~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~~ 382 (840)
.. ..+.+ --.+..++.+.+..+.++.. .+-+++..|.+++|++..
T Consensus 318 ~~----~~k~~~~~~~~~~~~G~~g~e~~l~~l~~~~~~~~~~~~~----~~~~~~t~~pA~~~gl~~ 377 (447)
T cd01314 318 NF----AQKARGKDDFTKIPNGVPGVETRMPLLWSEGVAKGRITLE----KFVELTSTNPAKIFGLYP 377 (447)
T ss_pred CH----HHhhcccCCHhhCCCCCchHhhhHHHHHHHHHHcCCCCHH----HHHHHHhhHHHHHhCCCC
Confidence 21 11111 12233445555666778874 456667789999999843
No 55
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=87.88 E-value=4.1 Score=46.46 Aligned_cols=139 Identities=22% Similarity=0.267 Sum_probs=72.7
Q ss_pred CCc--EEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCCC-chH-HHHHHHHHhCCEeEecccccCCCCc--
Q 003194 227 DLP--LQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASY-PFS-KEASYLAYVYPQVYLDFGLAIPKLS-- 300 (840)
Q Consensus 227 glP--vq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g~-p~~-~e~~~la~~~pNVyld~s~~~~~~~-- 300 (840)
|+| |.+|+|.++..+ ..|.++++.+..|--.|.--|..- +.. .+....+. ...++|+..-+....
T Consensus 188 ~~~g~~~vH~g~~~~~l-------~~l~~~~~~~di~~~~f~pth~~r~~~l~~~~i~~~~--~gg~iDv~~~~~~~~l~ 258 (389)
T TIGR01975 188 GKPGIVNFHVGDSKRAL-------QPIYELVENTDVPITQFLPTHINRNVPLFEAGLEFAK--KGGTIDLTSSIDPQFRK 258 (389)
T ss_pred CCCcEEEEEeCCchhhH-------HHHHHHHHhcCCChhheecCccCCCHHHHHHHHHHHH--hCCcEEEeCCCCccchh
Confidence 488 999999763211 134555665555655555556531 111 22222232 245666664221110
Q ss_pred -H-HHHHHHHHHHHHHC-CCCcEEEecCCCC-CcccchhhHH--------HHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 003194 301 -V-QGMISSIKELLELA-PTKKVMFSTDAYA-SPETYFLGAK--------RAREVVFSVLRDTCIDEDLSVGEAIEVAKD 368 (840)
Q Consensus 301 -~-~g~~~~l~~~le~~-~~~kilfgSD~~~-~Pe~~~~~~~--------~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~ 368 (840)
. .-..+.++.+++.+ +.+|+.+|||+.. .|. +.... .+ ..+-..+..++..+.++.. .+=+
T Consensus 259 ~~~~~~~~~~~~~~~~Gv~~~~i~isSD~~gs~p~--~~~~g~~~~~g~g~~-~sl~~~~~~lv~~g~ls~~----eal~ 331 (389)
T TIGR01975 259 EGEVAPAEGIKKALEAGVPLEKVTFSSDGNGSQPF--FDENGELTGLGVGSF-ETLFEEVREAVKDGDVPLE----KALR 331 (389)
T ss_pred ccccChHHHHHHHHHcCCCcceEEEEeCCCCCCCc--cccccccccCCcCcH-HHHHHHHHHHHHhCCCCHH----HHHH
Confidence 0 01123667777775 6789999999753 342 11000 00 0112233445556778874 3444
Q ss_pred HHHHhHHHHhcCC
Q 003194 369 IFALNAAQFYKIN 381 (840)
Q Consensus 369 Il~~NA~rly~l~ 381 (840)
..-.|++++++++
T Consensus 332 ~~T~npA~~Lgl~ 344 (389)
T TIGR01975 332 VITSNVAGVLNLT 344 (389)
T ss_pred HHHHHHHHHhCCC
Confidence 5567899999986
No 56
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=87.33 E-value=12 Score=40.64 Aligned_cols=155 Identities=14% Similarity=0.074 Sum_probs=81.0
Q ss_pred hhhhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCC---CchHHHHHHHHHhCC
Q 003194 210 SLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHAS---YPFSKEASYLAYVYP 286 (840)
Q Consensus 210 ~l~d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g---~p~~~e~~~la~~~p 286 (840)
++....+.-......+.|.|+..|+-.|-.+ ...++-+.+.+ -+=-++++.||+ .|+..+ -.|+..=-
T Consensus 148 p~Eek~lrAaA~A~~~Tg~Pi~tHt~~gt~g-------~eq~~il~~eg-vdl~~v~igH~d~n~dd~~y~-~~l~~~Ga 218 (316)
T COG1735 148 PLEEKSLRAAARAHKETGAPISTHTPAGTMG-------LEQLRILAEEG-VDLRKVSIGHMDPNTDDVYYQ-KKLADRGA 218 (316)
T ss_pred HHHHHHHHHHHHHhhhcCCCeEEeccchhhh-------HHHHHHHHHcC-CChhHeeEeccCCCCChHHHH-HHHHhcCc
Confidence 3444456666777778899999999765211 22344444443 445689999995 222110 12221111
Q ss_pred EeEecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEe-------cCCCCCcc-cchhhHHH--HHHHHHHHHhhhhcCCC
Q 003194 287 QVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFS-------TDAYASPE-TYFLGAKR--AREVVFSVLRDTCIDED 356 (840)
Q Consensus 287 NVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfg-------SD~~~~Pe-~~~~~~~~--~R~~l~~~l~~~v~~g~ 356 (840)
-+-+|.=+...+.+.+.-...+.++++.+-.++|+.| +| ++. ..+.+... +.-++.+++..+-+.|
T Consensus 219 ~l~fD~iG~d~y~pd~~r~~~~~~l~~~gy~d~i~ls~d~~~~~~~---~~~~~~~~~~~~~g~~~I~~~fIP~Lk~~G- 294 (316)
T COG1735 219 FLEFDRIGKDKYYPDEDRIAPLLELVARGYADLILLSHDDICLSDD---VFLKSMLKANGGWGYGYILNDFIPRLKRHG- 294 (316)
T ss_pred eEEecccCccccCcHHHhhhhHHHHHHhhHhhheecccchhhhhhh---HHHHhhhhhcCCcccchhhHhhHHHHHHcC-
Confidence 2444443333222222223456666666667888888 33 111 11111111 1112233344433333
Q ss_pred CChhHHHHHHHHHHHHhHHHHhcCC
Q 003194 357 LSVGEAIEVAKDIFALNAAQFYKIN 381 (840)
Q Consensus 357 l~~~ea~~~~~~Il~~NA~rly~l~ 381 (840)
++ | +.+..+|-+|.+|+|...
T Consensus 295 vd--e--~~i~~mlvdNP~r~f~~~ 315 (316)
T COG1735 295 VD--E--ETIDTMLVDNPARLFTAK 315 (316)
T ss_pred CC--H--HHHHHHHhhCHHHHhccC
Confidence 44 2 789999999999999753
No 57
>PRK09357 pyrC dihydroorotase; Validated
Probab=85.43 E-value=6.7 Score=45.10 Aligned_cols=159 Identities=16% Similarity=0.105 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhhCCCcEEEeeCCCCC---------CCCc---CCcChh-----hhH---HHHhhcCCCCcEEEEeCCCCc
Q 003194 214 YIFISSLEVAQFLDLPLQIHTGFGDK---------DLDL---RLSNPL-----HLR---AILEDKRFSKCRFVLLHASYP 273 (840)
Q Consensus 214 ~~l~~l~e~~~e~glPvq~H~G~gd~---------~~~~---~~~~P~-----~L~---~l~~~~~~P~l~~VllH~g~p 273 (840)
..+..+++.++++|+|+.+|..-... +... ..+.|. .+. .+++ .+ ++++.+.|.+.+
T Consensus 159 ~~l~~~~~~a~~~g~~v~iH~ee~~~~~~~~~~~g~~~~~~~~~~~p~~~E~~~i~~~~~la~--~~-g~~~hi~H~s~~ 235 (423)
T PRK09357 159 RLMRRALEYAKALDLLIAQHCEDPSLTEGGVMNEGEVSARLGLPGIPAVAEEVMIARDVLLAE--AT-GARVHICHVSTA 235 (423)
T ss_pred HHHHHHHHHHHhcCCEEEEeCCCHHHhhcccccCChhhHHhCCCCCCHHHHHHHHHHHHHHHH--HH-CCcEEEEeCCCH
Confidence 45677788999999999999874210 0000 011221 122 2333 34 599999999877
Q ss_pred hHHHHHHHHHhC-CEeEecccccC------------------CCC-cHHHHHHHHHHHHHHCCCCcEEEecCCCCCccc-
Q 003194 274 FSKEASYLAYVY-PQVYLDFGLAI------------------PKL-SVQGMISSIKELLELAPTKKVMFSTDAYASPET- 332 (840)
Q Consensus 274 ~~~e~~~la~~~-pNVyld~s~~~------------------~~~-~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~- 332 (840)
...+....+... -+|+.+++... |.. ++.+ ...|.++++.+ ....+|||..++...
T Consensus 236 ~~~~~i~~a~~~g~~v~~e~~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~-~~~l~~~l~~G--~~~~i~sDh~p~~~~~ 312 (423)
T PRK09357 236 GSVELIRWAKALGIKVTAEVTPHHLLLTDEDLLTYDPNYKVNPPLRTEED-REALIEGLKDG--TIDAIATDHAPHAREE 312 (423)
T ss_pred HHHHHHHHHHHcCCCEEEEechHHheEcHHHHhCcCCceEECCCCCCHHH-HHHHHHHHHcC--CCeEEecCCCCCChHH
Confidence 655555555433 25655544311 111 1122 23455555533 233699996443311
Q ss_pred ----ch---hhHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhcCCC
Q 003194 333 ----YF---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (840)
Q Consensus 333 ----~~---~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~~ 382 (840)
+| ++-..+...+..++...+.++.++.+ .+-+++..|++++++++.
T Consensus 313 k~~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~----~~~~~~t~~~A~~~g~~~ 365 (423)
T PRK09357 313 KECEFEAAPFGITGLETALSLLYTTLVKTGLLDLE----QLLEKMTINPARILGLPA 365 (423)
T ss_pred ccCCHhhCCCCceEHHHHHHHHHHHHHHcCCCCHH----HHHHHHhHHHHHHhCCCC
Confidence 00 00000122233344455666788874 455566699999999853
No 58
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=85.10 E-value=0.19 Score=54.86 Aligned_cols=67 Identities=18% Similarity=0.208 Sum_probs=54.4
Q ss_pred CCccccCCCCCccC--ccccccccCCCCcccccCCCCCCCCccceEEEcCCCCCCCHHHHHHHHHHHHHHh
Q 003194 694 PNSYDRIQPNTWSG--AYQCWGKENREAPLRTACPPGVKDGVVSNFELKSFDGCANPHLGLAAIIASGIDG 762 (840)
Q Consensus 694 ~nSY~Rl~~~~~ap--~~~~WG~~NR~~~iRv~~~~~~~~~~~~~~E~R~~d~~aNPYLalAailaAGl~G 762 (840)
...-+||...++++ ...+||.-||.+.||||... ..+....+|.|.||.++.||+|..+++-..|..
T Consensus 301 ~dN~rrltg~hEt~~i~~Fs~GvAnr~~siri~r~v--a~~~~Gy~edrrP~sN~Dpy~Vt~~~~~t~l~~ 369 (380)
T KOG0683|consen 301 KDNERRLTGRHETGSIDNFSWGVANRNPSIRIPRTV--AAEGKGYFEDRRPSSNCDPYAVTLMIIPTTLLE 369 (380)
T ss_pred ccchhhhcCCCccccccccccccccCCceeeechhh--hcccccccccCCCcCCCCcceeeHHHhhHHHhc
Confidence 33467888777777 56999999999999999743 334457999999999999999999998877643
No 59
>PLN02795 allantoinase
Probab=84.61 E-value=18 Score=42.74 Aligned_cols=163 Identities=17% Similarity=0.093 Sum_probs=89.1
Q ss_pred hhhHHHHHHHHHHhhCCCcEEEeeCCCCC---------CC-C---cCCcChh--------hhHHHHhh----cCCCCcEE
Q 003194 211 LIDYIFISSLEVAQFLDLPLQIHTGFGDK---------DL-D---LRLSNPL--------HLRAILED----KRFSKCRF 265 (840)
Q Consensus 211 l~d~~l~~l~e~~~e~glPvq~H~G~gd~---------~~-~---~~~~~P~--------~L~~l~~~----~~~P~l~~ 265 (840)
.++..+..+++.++++|+||.+|.-..+- +. + ...+.|. .+-.+++. ++-|+.++
T Consensus 209 ~~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~~~~~~~~~~~~~rP~~aE~~ai~~~~~la~~~~~~~~~~g~~l 288 (505)
T PLN02795 209 TTATHIKAALPVLAKYGRPLLVHAEVVSPVESDSRLDADPRSYSTYLKSRPPSWEQEAIRQLLEVAKDTRPGGVAEGAHV 288 (505)
T ss_pred CCHHHHHHHHHHHHHhCCEEEEecCChhHhhhhhhhhcCCcChhHhcccCCHHHHHHHHHHHHHHHHHhhhcccCCCCCE
Confidence 34456788889999999999999865320 00 0 0112342 12233331 24479999
Q ss_pred EEeCCCCc-hHHHHHHHHHhCC-EeEecccccC------------------CCCcHHHHHHHHHHHHHHCCCCcEEEecC
Q 003194 266 VLLHASYP-FSKEASYLAYVYP-QVYLDFGLAI------------------PKLSVQGMISSIKELLELAPTKKVMFSTD 325 (840)
Q Consensus 266 VllH~g~p-~~~e~~~la~~~p-NVyld~s~~~------------------~~~~~~g~~~~l~~~le~~~~~kilfgSD 325 (840)
.+.|.+.+ ...++...++... +|+++++... |-+-...-+..|-+.+.-+-+| +.+||
T Consensus 289 hi~HiSt~~~~~e~i~~ak~~G~~Vt~Ev~ph~L~l~~~~~~~~~~~~k~~PPLR~~~d~~aL~~al~~G~Id--~i~sD 366 (505)
T PLN02795 289 HIVHLSDAESSLELIKEAKAKGDSVTVETCPHYLAFSAEEIPDGDTRYKCAPPIRDAANRELLWKALLDGDID--MLSSD 366 (505)
T ss_pred EEEECCChHHHHHHHHHHHHCCCcEEEEeChhhhcccHHHccCCCCceEEcCCCCChHHHHHHHHHHhCCCce--EEecC
Confidence 99999877 6666655554433 6777765421 1010011233455555544445 68999
Q ss_pred CCCCccc--------ch---hhHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhcC
Q 003194 326 AYASPET--------YF---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKI 380 (840)
Q Consensus 326 ~~~~Pe~--------~~---~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l 380 (840)
.-++... +| .+.-..-..+..++...++ +.++.. .+-+++..|.+++|++
T Consensus 367 Hap~~~~~K~~~~~~~~~a~~G~~gle~~l~~~~~~~~~-~~l~l~----~~v~~~s~~pA~~~gl 427 (505)
T PLN02795 367 HSPSPPDLKLLEEGNFLRAWGGISSLQFVLPATWTAGRA-YGLTLE----QLARWWSERPAKLAGL 427 (505)
T ss_pred CCCCChHHhccCcCCHhhCCCCceeHHHHHHHHHHHHHH-cCCCHH----HHHHHHHHHHHHHhCC
Confidence 7554310 00 0000011223333434443 447874 4567788999999998
No 60
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=84.12 E-value=14 Score=41.65 Aligned_cols=141 Identities=22% Similarity=0.183 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCEeEec
Q 003194 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLD 291 (840)
Q Consensus 212 ~d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~pNVyld 291 (840)
.|..+..+++.+... +|+.+|+...+ ....+-.+++ +| ++++++.|+..- ...+..|+. .|+++.
T Consensus 178 ~d~~l~~l~~~~~~~-~~v~vHa~~~~--------~i~~~l~~~~--e~-g~~~~i~H~~~~-~~~~~~la~--~gv~v~ 242 (359)
T cd01309 178 RDLKLEALLPVLKGE-IPVRIHAHRAD--------DILTAIRIAK--EF-GIKITIEHGAEG-YKLADELAK--HGIPVI 242 (359)
T ss_pred CCccHHHHHHHHcCC-eeEEEEeCCHH--------HHHHHHHHHH--Hc-CCCEEEECchhH-HHHHHHHHH--cCCCEE
Confidence 455667777777654 99999986311 1233444555 45 678999999654 333444443 255554
Q ss_pred cc--ccCCCCc--HHHHHHHHHHHHHHCCCCcEEEecCCCCCcccchhhHHHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 003194 292 FG--LAIPKLS--VQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAK 367 (840)
Q Consensus 292 ~s--~~~~~~~--~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~ 367 (840)
++ ++.+... .......+..+++.+| =++.++||...+|. ..+...+. ..+. ..++.. .+-
T Consensus 243 ~~P~~~~~~~~~~~~~~~~~~~~l~~aGG-v~valgsD~~~~~~------~~l~~~~~----~a~~-~gl~~~----~al 306 (359)
T cd01309 243 YGPTLTLPKKVEEVNDAIDTNAYLLKKGG-VAFAISSDHPVLNI------RNLNLEAA----KAVK-YGLSYE----EAL 306 (359)
T ss_pred ECccccccccHHHhhcchhhHHHHHHcCC-ceEEEECCCCCccc------hhHHHHHH----HHHH-cCCCHH----HHH
Confidence 33 2222110 0000123344444432 46889999543331 11222111 1122 236653 344
Q ss_pred HHHHHhHHHHhcCCCC
Q 003194 368 DIFALNAAQFYKINLG 383 (840)
Q Consensus 368 ~Il~~NA~rly~l~~~ 383 (840)
+.+-.|++++++++..
T Consensus 307 ~~~T~n~A~~lg~~~~ 322 (359)
T cd01309 307 KAITINPAKILGIEDR 322 (359)
T ss_pred HHHHHHHHHHhCCCCC
Confidence 4456899999998653
No 61
>PLN02942 dihydropyrimidinase
Probab=83.45 E-value=21 Score=41.98 Aligned_cols=164 Identities=15% Similarity=0.111 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCC--------------CCCC-cCCcChhh-----hHHHHhhcCCCCcEEEEeCCC
Q 003194 212 IDYIFISSLEVAQFLDLPLQIHTGFGD--------------KDLD-LRLSNPLH-----LRAILEDKRFSKCRFVLLHAS 271 (840)
Q Consensus 212 ~d~~l~~l~e~~~e~glPvq~H~G~gd--------------~~~~-~~~~~P~~-----L~~l~~~~~~P~l~~VllH~g 271 (840)
.+..+..+++.++++|+++.+|.-..+ .+.. ...+.|.. +..++.--++-+.++.+.|+.
T Consensus 165 ~~~~l~~~~~~a~~~~~~v~~HaE~~~~~~~~~~~~~~~G~~~~~~~~~~rP~~~E~~av~~~~~la~~~g~~~~i~H~s 244 (486)
T PLN02942 165 TDELLLEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLYVVHVM 244 (486)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChhhhhccCCchHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 344567778888889999999954210 0110 01123421 222221112446899999998
Q ss_pred CchHHHHHHHHHhC-CEeEecccc-------------------c---CCCCcHHHHHHHHHHHHHHCCCCcEEEecCCCC
Q 003194 272 YPFSKEASYLAYVY-PQVYLDFGL-------------------A---IPKLSVQGMISSIKELLELAPTKKVMFSTDAYA 328 (840)
Q Consensus 272 ~p~~~e~~~la~~~-pNVyld~s~-------------------~---~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (840)
..-..+....+... -+|..+++. + .|-+.....+..|.+.++.+ -...+|||..+
T Consensus 245 ~~~~~e~i~~~k~~G~~Vt~e~~ph~L~l~~~~~~~~~~~~~~~~k~~PPlr~~~~~~~L~~~l~~G--~i~~igTDh~p 322 (486)
T PLN02942 245 SIDAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHGKALQAALSSG--ILQLVGTDHCP 322 (486)
T ss_pred CHHHHHHHHHHHHCCCcEEEEECchhheeCHHHhcCcccccCcceEECCCCCCHHHHHHHHHHhcCC--ceEEEECCCCC
Confidence 76653444444333 255555542 1 01111112223344444322 35569999644
Q ss_pred Ccccc--------h---hhHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhcCC
Q 003194 329 SPETY--------F---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (840)
Q Consensus 329 ~Pe~~--------~---~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (840)
+.... | .+.......+..++...+..+.++.. .+-+++-.|.+++|++.
T Consensus 323 ~~~~~k~~~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~i~~~----~~l~~~t~~pA~~lgl~ 382 (486)
T PLN02942 323 FNSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQISPT----DYVRVTSTECAKIFNIY 382 (486)
T ss_pred CChHHhhcccCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHHHhCCC
Confidence 33100 0 00000011232334445556778874 45566778999999985
No 62
>PRK07369 dihydroorotase; Provisional
Probab=83.44 E-value=13 Score=42.85 Aligned_cols=161 Identities=16% Similarity=0.025 Sum_probs=87.6
Q ss_pred HHHHHHHHHhhCCCcEEEeeCCCC--------CC---CCc-CCcChh-----hhHHHHhhcCCCCcEEEEeCCCCchHHH
Q 003194 215 IFISSLEVAQFLDLPLQIHTGFGD--------KD---LDL-RLSNPL-----HLRAILEDKRFSKCRFVLLHASYPFSKE 277 (840)
Q Consensus 215 ~l~~l~e~~~e~glPvq~H~G~gd--------~~---~~~-~~~~P~-----~L~~l~~~~~~P~l~~VllH~g~p~~~e 277 (840)
.+..+++.++++|.++.+|.--.. .+ ... ..+.|. .+..++.--+.-+.++++.|.+-+...+
T Consensus 163 ~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~~g~~~~~~~~~~~p~~aE~~av~r~~~la~~~~~~~hi~HvSs~~~~~ 242 (418)
T PRK07369 163 LLRRLLEYLKPLGKPVALWPCDRSLAGNGVMREGLLALRLGLPGDPASAETTALAALLELVAAIGTPVHLMRISTARSVE 242 (418)
T ss_pred HHHHHHHHHHhcCCeEEEecCChhhhhcCcccCChhHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHHHH
Confidence 556677888889999999974311 00 000 112342 2222222112348999999998776665
Q ss_pred HHHHHHhCC-EeEecccccCCCCc------------------HHHHHHHHHHHHHHCCCCcEEEecCCCCCccc-----c
Q 003194 278 ASYLAYVYP-QVYLDFGLAIPKLS------------------VQGMISSIKELLELAPTKKVMFSTDAYASPET-----Y 333 (840)
Q Consensus 278 ~~~la~~~p-NVyld~s~~~~~~~------------------~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~-----~ 333 (840)
+...++... +|+++++...-.++ .+.-+..|-+.+..+-++ +.+||.-++... +
T Consensus 243 ~i~~ak~~g~~vt~Ev~phhL~l~~~~~~~~~~~~kv~PPLR~~~d~~aL~~~l~~G~Id--~i~SDHaP~~~~~K~~~~ 320 (418)
T PRK07369 243 LIAQAKARGLPITASTTWMHLLLDTEALASYDPNLRLDPPLGNPSDRQALIEGVRTGVID--AIAIDHAPYTYEEKTVAF 320 (418)
T ss_pred HHHHHHHcCCCeEEEecHHHHhccHHHHhccCCCcEECCCCCCHHHHHHHHHHHhcCCCC--EEEcCCCCCCHHHccCCH
Confidence 555554433 67777765321110 001123444555544445 689996544310 0
Q ss_pred h---hhHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhcCC
Q 003194 334 F---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (840)
Q Consensus 334 ~---~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (840)
| .+.-..--.|..++...+.++.++.. .+-+++..|++|+|+++
T Consensus 321 ~~~~~G~~G~e~~l~~~~~~~v~~~~i~l~----~~v~~~s~nPA~~lgl~ 367 (418)
T PRK07369 321 AEAPPGAIGLELALPLLWQNLVETGELSAL----QLWQALSTNPARCLGQE 367 (418)
T ss_pred hHCCCCceeHHHHHHHHHHHHHHcCCCCHH----HHHHHHHHhHHHHhCCC
Confidence 1 01001112334445566777888874 55667789999999985
No 63
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=83.14 E-value=18 Score=40.30 Aligned_cols=135 Identities=15% Similarity=0.047 Sum_probs=67.3
Q ss_pred HHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCCCch----HH------HHHHHHHhCC
Q 003194 217 ISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF----SK------EASYLAYVYP 286 (840)
Q Consensus 217 ~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~----~~------e~~~la~~~p 286 (840)
....+++.++|+|+.+|++.+.. ....+..+++ ++ .++.|+-... .+ +... ...-.
T Consensus 152 ~~~~~~a~~~~~pi~vH~~~~~~-------~~~~~~~~l~----~g--~~~~H~~~g~~~~~~~~~~~~~~~~~-~~~~~ 217 (338)
T cd01307 152 ELAKKIAKEADLPLMVHIGSPPP-------ILDEVVPLLR----RG--DVLTHCFNGKPNGIVDEEGEVLPLVR-RARER 217 (338)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC-------CHHHHHHHhc----CC--CEEEeccCCCCCCCCCCCCcHHHHHH-HHHhC
Confidence 35567788999999999986532 1222333333 22 3567762211 11 1111 11224
Q ss_pred EeEeccc-ccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCCCCcccchhhHHHHHHHHHHHHhhhhcCCCCChhHHHHH
Q 003194 287 QVYLDFG-LAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEV 365 (840)
Q Consensus 287 NVyld~s-~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~ 365 (840)
++|+|++ +..... .+..+.+++...... +.+||...--....+.. .+...+ .... ...++. +.
T Consensus 218 G~~~d~~~G~~~~~-----~~~~~~l~~~G~~~~-~lstD~~~~~~~~~p~~-~l~~~l----~~l~-~~gi~~----ee 281 (338)
T cd01307 218 GVIFDVGHGTASFS-----FRVARAAIAAGLLPD-TISSDIHGRNRTNGPVY-ALATTL----SKLL-ALGMPL----EE 281 (338)
T ss_pred CEEEEeCCCCCchh-----HHHHHHHHHCCCCCe-eecCCccccCCCCCccc-cHHHHH----HHHH-HcCCCH----HH
Confidence 8999977 321111 123344555433233 47999532000000111 011222 2221 124665 57
Q ss_pred HHHHHHHhHHHHhcCC
Q 003194 366 AKDIFALNAAQFYKIN 381 (840)
Q Consensus 366 ~~~Il~~NA~rly~l~ 381 (840)
+.++...|++++|+++
T Consensus 282 ~~~~~T~NpA~~lgl~ 297 (338)
T cd01307 282 VIEAVTANPARMLGLA 297 (338)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 8889999999999984
No 64
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=82.17 E-value=17 Score=42.18 Aligned_cols=164 Identities=16% Similarity=0.150 Sum_probs=82.4
Q ss_pred hhhHHHHHHHHHHhhCCCcEEEeeCCCC--------------CCCCc-CCcCh-----hhhHHHHhhcCCCCcEEEEeCC
Q 003194 211 LIDYIFISSLEVAQFLDLPLQIHTGFGD--------------KDLDL-RLSNP-----LHLRAILEDKRFSKCRFVLLHA 270 (840)
Q Consensus 211 l~d~~l~~l~e~~~e~glPvq~H~G~gd--------------~~~~~-~~~~P-----~~L~~l~~~~~~P~l~~VllH~ 270 (840)
.++..+.++++.|+++|+||.+|++..+ .+... ..+.| ..+..++..-+.-++++.+.|.
T Consensus 159 ~~~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~g~~ihi~h~ 238 (447)
T cd01315 159 VDDEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKETGCRLHIVHL 238 (447)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHhhcCCCChHHhhccCCHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 3455678889999999999999987521 00100 11122 1233332211234599999998
Q ss_pred CCchHHHHHHHHHh-CCEeEecccccC------------------CCC-cHHHHHHHHHHHHHHCCCCcEEEecCCCCCc
Q 003194 271 SYPFSKEASYLAYV-YPQVYLDFGLAI------------------PKL-SVQGMISSIKELLELAPTKKVMFSTDAYASP 330 (840)
Q Consensus 271 g~p~~~e~~~la~~-~pNVyld~s~~~------------------~~~-~~~g~~~~l~~~le~~~~~kilfgSD~~~~P 330 (840)
+.+...++...+.. -.+|+++++... |-+ +... +..+-+.+..+ ...+.+||..++.
T Consensus 239 s~~~~~~~i~~~~~~g~~i~~e~~~h~l~~~~~~~~~~~~~~~~~Pplr~~~~-~~~l~~~l~~g--~i~~i~SDh~p~~ 315 (447)
T cd01315 239 SSAEAVPLIREARAEGVDVTVETCPHYLTFTAEDVPDGGTEFKCAPPIRDAAN-QEQLWEALENG--DIDMVVSDHSPCT 315 (447)
T ss_pred CCHHHHHHHHHHHHCCCceEEEeccccEEEcHHHccCCCCceEECCCCCChHH-HHHHHHHHhCC--ceeEEeCCCCCCC
Confidence 77655554444432 235665544321 111 1111 12222333211 2345999964432
Q ss_pred c--------cchh---hHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhcCC
Q 003194 331 E--------TYFL---GAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (840)
Q Consensus 331 e--------~~~~---~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (840)
. .++. +.-..-..+..++...++++.++.. .+-+.+..|++++++++
T Consensus 316 ~~~k~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~t~~pa~~~g~~ 373 (447)
T cd01315 316 PELKLLGKGDFFKAWGGISGLQLGLPVMLTEAVNKRGLSLE----DIARLMCENPAKLFGLS 373 (447)
T ss_pred HHHhccCCCChhhCCCCeeEHHHhHHHHHHHHHHcCCCCHH----HHHHHHhHHHHHHhCCC
Confidence 1 0000 0000111233344455666788874 44556678889999985
No 65
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=79.49 E-value=20 Score=41.17 Aligned_cols=162 Identities=15% Similarity=0.093 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCC-----------CCCC-cCCcChh-----hhHHHHhhcCCCCcEEEEeCCCCch
Q 003194 212 IDYIFISSLEVAQFLDLPLQIHTGFGD-----------KDLD-LRLSNPL-----HLRAILEDKRFSKCRFVLLHASYPF 274 (840)
Q Consensus 212 ~d~~l~~l~e~~~e~glPvq~H~G~gd-----------~~~~-~~~~~P~-----~L~~l~~~~~~P~l~~VllH~g~p~ 274 (840)
++..+..+++.++++|+|+.+|+-... .+.. ...+.|. .+..++.--+.-++++++.|.+.+.
T Consensus 145 ~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~g~~~~~~~~~~~p~~aE~~ai~~~~~la~~~~~~~~i~Hvs~~~ 224 (411)
T TIGR00857 145 DILSMRRALEYAAIAGVPIALHAEDPDLIYGGVMHEGPSAAQLGLPARPPEAEEVAVARLLELAKHAGCPVHICHISTKE 224 (411)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCHHHHhhhhhcCCcccHhhCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHH
Confidence 444667788899999999999965321 0111 1123342 2222222112348999999998766
Q ss_pred HHHHHHHHHhCC-EeEecccccCCC------------------C-cHHHHHHHHHHHHHHCCCCcEEEecCCCCCccc--
Q 003194 275 SKEASYLAYVYP-QVYLDFGLAIPK------------------L-SVQGMISSIKELLELAPTKKVMFSTDAYASPET-- 332 (840)
Q Consensus 275 ~~e~~~la~~~p-NVyld~s~~~~~------------------~-~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~-- 332 (840)
..++...+.... +|+.+++...-. + +..+ +..|-+.+..+-.+ +.+||..+++..
T Consensus 225 ~l~~i~~a~~~g~~v~~ev~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~-~~~L~~~l~~g~i~--~i~sDh~p~~~~~k 301 (411)
T TIGR00857 225 SLELIVKAKSQGIKITAEVTPHHLLLSEEDVARLDGNGKVNPPLREKED-RLALIEGLKDGIID--IIATDHAPHTLEEK 301 (411)
T ss_pred HHHHHHHHHHcCCcEEEeechhhheecHHHHhCCCccEEEcCCCCCHHH-HHHHHHHHhcCCCc--EEEcCCCCCChHHc
Confidence 555555554432 677776542211 1 1111 12334444433333 689996544310
Q ss_pred ------chhhHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhcCC
Q 003194 333 ------YFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (840)
Q Consensus 333 ------~~~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (840)
.+.+.....-.+..++ ..+.++.++.. .+-+.+..|.+++++++
T Consensus 302 ~~~~~~~~~G~~g~e~~~~~~~-~~~~~~~~~~~----~~~~~~t~~pa~~~g~~ 351 (411)
T TIGR00857 302 TKEFAAAPPGIPGLETALPLLL-QLLVKGLISLK----DLIRMLSINPARIFGLP 351 (411)
T ss_pred cCCHhhCCCCceeHHHHHHHHH-HHHHhCCCCHH----HHHHHHhHHHHHHhCCC
Confidence 0111111112222233 33344567764 34445558888899884
No 66
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=76.64 E-value=1.3e+02 Score=33.27 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHHhhCCCcEEEeeC
Q 003194 211 LIDYIFISSLEVAQFLDLPLQIHTG 235 (840)
Q Consensus 211 l~d~~l~~l~e~~~e~glPvq~H~G 235 (840)
+.+..+..+++.+.++|+++.+|+.
T Consensus 157 ~~~e~l~~~~~~A~~~g~~v~~H~~ 181 (342)
T cd01299 157 FSEEELRAIVDEAHKAGLYVAAHAY 181 (342)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEEeC
Confidence 4455678889999999999999986
No 67
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=76.08 E-value=37 Score=38.35 Aligned_cols=33 Identities=9% Similarity=-0.069 Sum_probs=23.3
Q ss_pred HHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhcCC
Q 003194 345 FSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (840)
Q Consensus 345 ~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (840)
..++...++.+.++.. .+-+++..|+++++++.
T Consensus 293 ~~~~~~~~~~~~~~~~----~~~~~~t~npA~~lgl~ 325 (374)
T cd01317 293 PLLWTLLVKGGLLTLP----DLIRALSTNPAKILGLP 325 (374)
T ss_pred HHHHHHHHHcCCCCHH----HHHHHHHHHHHHHhCCC
Confidence 3344455566778874 55667789999999985
No 68
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=74.67 E-value=62 Score=36.77 Aligned_cols=156 Identities=17% Similarity=0.040 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHhhC-CCcEEEeeCCCCCCCCc---CC-cChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCC
Q 003194 212 IDYIFISSLEVAQFL-DLPLQIHTGFGDKDLDL---RL-SNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYP 286 (840)
Q Consensus 212 ~d~~l~~l~e~~~e~-glPvq~H~G~gd~~~~~---~~-~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~p 286 (840)
.+..+..+.+.+.++ |+|+.+|..-+....+. .+ ..|..++.+.+. .+-+.++++.|+.+--..++..++..--
T Consensus 184 s~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~l~~~-g~lg~~~~~~H~~~~~~~~~~~l~~~g~ 262 (401)
T TIGR02967 184 SPEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKELFPEAKDYLDVYDHY-GLLGRRSVFAHCIHLSDEECQRLAETGA 262 (401)
T ss_pred cHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHcCCCCcHHHHHHHC-CCCCCCeEEEecccCCHHHHHHHHHcCC
Confidence 344677788999999 99999999744221110 00 111123323332 2345688999996543344445554322
Q ss_pred EeEecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCCCCcccchhhHHHHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 003194 287 QVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVA 366 (840)
Q Consensus 287 NVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~ 366 (840)
+|...+..-+ ....| ...++++++. |. ++.+|||+...+... -.+..|... .+.... ...++.. +..
T Consensus 263 ~v~~~P~~~~--~~~~g-~~~~~~~~~~-Gv-~v~lGtD~~~~~~~~--~~~~~~~~~--~~~~~~-~~~~~~~---~~l 329 (401)
T TIGR02967 263 AIAHCPTSNL--FLGSG-LFNLKKALEH-GV-RVGLGTDVGGGTSFS--MLQTLREAY--KVSQLQ-GARLSPF---EAF 329 (401)
T ss_pred eEEEChHHHH--HhccC-CCCHHHHHHC-CC-eEEEecCCCCCCCcC--HHHHHHHHH--HHhhhc-CCCCCHH---HHH
Confidence 2322221100 00001 1124455554 43 899999964322111 111222211 111111 2346653 345
Q ss_pred HHHHHHhHHHHhcCCC
Q 003194 367 KDIFALNAAQFYKINL 382 (840)
Q Consensus 367 ~~Il~~NA~rly~l~~ 382 (840)
++. -.|+++.++++.
T Consensus 330 ~~a-T~~~A~~lg~~~ 344 (401)
T TIGR02967 330 YLA-TLGGARALDLDD 344 (401)
T ss_pred HHH-HHHHHHHhCCcC
Confidence 544 456677778753
No 69
>TIGR03444 gshA_related glutamate--cysteine ligase family protein. Members of this bacterial protein family bear homology to glutamate--cysteine ligase, an enzyme in the two-step pathway of glutathione (GSH) biosynthesis, but are distinctly different. Among the bacterial genomes that carry the uncharacterized methyltransferase (TIGR03438) and conserved hypothetical protein TIGR03440, this protein is found in a subset, always in the vicinity of these other genes. Conserved hypothetical protein TIGR03442 is found in these same genomes. The role of this cassette is probably biosynthetic, but the product is unknown.
Probab=74.15 E-value=14 Score=41.87 Aligned_cols=38 Identities=29% Similarity=0.262 Sum_probs=34.8
Q ss_pred CCCceEEecCcc-hHHHHHhHHHHHHHHHHHHHHHcCCe
Q 003194 590 GKGQFEIALGHT-VAAKAADNLIFTREVLRAVARKHGLL 627 (840)
Q Consensus 590 gpGQ~Ei~l~~~-~~l~aaD~~~~~r~~ik~vA~~~Gl~ 627 (840)
--||+|++..|+ +.-++++.+...+..++++|+++|+.
T Consensus 68 PGgQvELSt~P~~sl~el~~el~~~l~~l~~~a~~~Gl~ 106 (390)
T TIGR03444 68 PGGQLELSGPPADGLTAAVAALAADLAVLRAALAEDGLA 106 (390)
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 348999999998 77789999999999999999999996
No 70
>PRK07583 cytosine deaminase-like protein; Validated
Probab=70.84 E-value=56 Score=37.80 Aligned_cols=56 Identities=11% Similarity=-0.014 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCC
Q 003194 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHAS 271 (840)
Q Consensus 212 ~d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g 271 (840)
.+..+..+++.|.++|+|+.+|++..+... ... +..+.+.+.. ..++-++++.|+.
T Consensus 210 ~d~~l~~i~~lA~~~G~~v~vH~~E~~~~~--~~~-l~~~~~~~~~-~G~~~~v~i~H~~ 265 (438)
T PRK07583 210 LDAQLDRLFRLARERGLDLDLHVDETGDPA--SRT-LKAVAEAALR-NGFEGKVTCGHCC 265 (438)
T ss_pred HHHHHHHHHHHHHHhCCCcEEeECCCCCch--HHH-HHHHHHHHHH-hCCCCCEEEEecc
Confidence 445788999999999999999997532110 011 2223333322 4455679999984
No 71
>PRK08044 allantoinase; Provisional
Probab=70.31 E-value=54 Score=38.15 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=23.9
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhcCC
Q 003194 344 VFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (840)
Q Consensus 344 l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (840)
+..++...+.++.++.. .+-+.+..|++|+||++
T Consensus 342 l~~~~~~~v~~~~l~~~----~~v~~~s~npA~~lgl~ 375 (449)
T PRK08044 342 MDVMFDEAVQKRGMSLP----MFGKLMATNAADIFGLQ 375 (449)
T ss_pred HHHHHHHHHHcCCCCHH----HHHHHHHHhHHHHhCCC
Confidence 33445566777889974 44455668999999994
No 72
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=70.14 E-value=9.9 Score=32.47 Aligned_cols=65 Identities=22% Similarity=0.238 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhCCCceeeeccCCCC------CceEEecCcchHHHHHhHHHHHHHHHHHHHHHcCCeeEecc
Q 003194 566 PVFQEVLADLHSLNISVEQLHAEAGK------GQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVP 632 (840)
Q Consensus 566 ~~~~~i~~~l~~~Gi~ve~~h~E~gp------GQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~Gl~ATFmp 632 (840)
.++.+|.+.|.+.|++|..+....-+ ++|.+.+.-.-+ ... +.-.++.-++.+|++.|+.++|-|
T Consensus 11 Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~~-~~~~l~~~l~~l~~~~~~~~~~~~ 81 (81)
T cd04869 11 GIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AGT-DLDALREELEELCDDLNVDISLEP 81 (81)
T ss_pred CHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CCC-CHHHHHHHHHHHHHHhcceEEecC
Confidence 47888999999999999999776554 778655544433 112 256788889999999999988854
No 73
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=69.44 E-value=52 Score=39.20 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=36.5
Q ss_pred CCcEEEecCCCC------Cccc-chhhHHHHHHHHHHHHhhhhc--------CCCCChhHHHHHHHHHHHHhHHHHhcCC
Q 003194 317 TKKVMFSTDAYA------SPET-YFLGAKRAREVVFSVLRDTCI--------DEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (840)
Q Consensus 317 ~~kilfgSD~~~------~Pe~-~~~~~~~~R~~l~~~l~~~v~--------~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (840)
+.|+++.||.+. ||+. .|+-++.+|+..-.-+-.++. +.++++ +.+-++...|+++.||+.
T Consensus 375 p~~~~~ttDhPnggpf~~YP~ii~~lm~~~~r~~~~~~~~~~~~~~~~l~~~~Re~sL----~EI~~mtTanPAkaLGL~ 450 (556)
T TIGR03121 375 PWRVFLTTDHPNGGPFTRYPRIIALLMSRKYREDMLSTVHPWAAARSTLGGIDREYSL----YEIAIMTRAGPAKLLGLT 450 (556)
T ss_pred cceeEEeccCCCCCcccchHHHHHHHcCHHHHHHHHHhcCHHHHhhcccccccCCCCH----HHHHHHHHHHHHHHhCCC
Confidence 369999999543 4432 344555666443211223321 234555 456677789999999985
No 74
>PRK09059 dihydroorotase; Validated
Probab=68.60 E-value=54 Score=37.89 Aligned_cols=162 Identities=14% Similarity=0.067 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCC---CCC--------Cc-CCcChh-----hhHHHHhhcCCCCcEEEEeCCCCch
Q 003194 212 IDYIFISSLEVAQFLDLPLQIHTGFGD---KDL--------DL-RLSNPL-----HLRAILEDKRFSKCRFVLLHASYPF 274 (840)
Q Consensus 212 ~d~~l~~l~e~~~e~glPvq~H~G~gd---~~~--------~~-~~~~P~-----~L~~l~~~~~~P~l~~VllH~g~p~ 274 (840)
++..+..+++.++++|.++.+|.--.+ .+. .+ ..+.|. .+..++.--+..+.++.+.|.+.+-
T Consensus 164 ~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~~~~~~~~~~rP~~aE~~av~r~~~la~~~~~~~hi~hvs~~~ 243 (429)
T PRK09059 164 NTQVMRRALTYARDFDAVIVHETRDPDLGGNGVMNEGLFASWLGLSGIPREAEVIPLERDLRLAALTRGRYHAAQISCAE 243 (429)
T ss_pred CHHHHHHHHHHHHhcCCEEEEecCChhhhcCCCcCCcHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCHH
Confidence 344677888999999999999974321 000 00 122342 2222222113568999999998766
Q ss_pred HHHHHHHHHhC-CEeEecccccCCCC-------------------cHHHHHHHHHHHHHHCCCCcEEEecCCCCCccc--
Q 003194 275 SKEASYLAYVY-PQVYLDFGLAIPKL-------------------SVQGMISSIKELLELAPTKKVMFSTDAYASPET-- 332 (840)
Q Consensus 275 ~~e~~~la~~~-pNVyld~s~~~~~~-------------------~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~-- 332 (840)
..++...+... -+|+.+++...-.+ ++.. +..|-+.+..+.++ +++||.-++...
T Consensus 244 ~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~~~~~~kvnPPLR~~~d-~~~L~~~l~~g~id--~i~sDh~p~~~~~K 320 (429)
T PRK09059 244 SAEALRRAKDRGLKVTAGVSINHLSLNENDIGEYRTFFKLSPPLRTEDD-RVAMVEAVASGTID--IIVSSHDPQDVDTK 320 (429)
T ss_pred HHHHHHHHHHCCCCEEEeecHHHHhccHHHHhccCCccEEcCCCCCHHH-HHHHHHHHHcCCCc--EEEeCCCCCCHHHC
Confidence 65555555433 26777776432111 1111 12333333323222 367886444210
Q ss_pred ---chh---hHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhcCC
Q 003194 333 ---YFL---GAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (840)
Q Consensus 333 ---~~~---~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (840)
+|. +.-..-..+.-++ ..+.++.+++. .+-+++..|++|+|+|+
T Consensus 321 ~~~~~~~~~G~~gle~~l~~~~-~~v~~~~l~l~----~~~~~~s~nPA~~~gl~ 370 (429)
T PRK09059 321 RLPFSEAAAGAIGLETLLAAAL-RLYHNGEVPLL----RLIEALSTRPAEIFGLP 370 (429)
T ss_pred cCChhhCCCCcccHHHHHHHHH-HHHHcCCCCHH----HHHHHHhHHHHHHhCCC
Confidence 110 1001111122222 34667788874 45566677999999994
No 75
>PRK09228 guanine deaminase; Provisional
Probab=66.35 E-value=1e+02 Score=35.61 Aligned_cols=109 Identities=15% Similarity=0.000 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHhhC-CCcEEEeeCCCCCCCCc---CCc-ChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCE
Q 003194 213 DYIFISSLEVAQFL-DLPLQIHTGFGDKDLDL---RLS-NPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (840)
Q Consensus 213 d~~l~~l~e~~~e~-glPvq~H~G~gd~~~~~---~~~-~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~pN 287 (840)
+..+..+.++|+++ |+|+++|..-+..+... .+. .|..++.+.+- .+-+-++++.|+.+--..++..++..--+
T Consensus 210 ~~~l~~~~~lA~~~~~~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~l~~~-G~l~~~~~~~H~~~l~~~~~~~la~~g~~ 288 (433)
T PRK09228 210 PEQLEAAGALAREHPDVWIQTHLSENLDEIAWVKELFPEARDYLDVYERY-GLLGPRAVFAHCIHLEDRERRRLAETGAA 288 (433)
T ss_pred HHHHHHHHHHHHHCCCCceEEeecCChhHHHHHHHHcCCCCCHHHHHHHc-CCCCCCeEEEeccCCCHHHHHHHHHcCCe
Confidence 44677888999998 99999999865322110 011 11123223332 22345889999965544555666654333
Q ss_pred eEecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 003194 288 VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (840)
Q Consensus 288 Vyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (840)
|-..+..-. ....|+ ..+.++++.+ -++.+|||+.
T Consensus 289 v~~~P~sn~--~lg~g~-~~~~~~~~~G--v~v~lGtD~~ 323 (433)
T PRK09228 289 IAFCPTSNL--FLGSGL-FDLKRADAAG--VRVGLGTDVG 323 (433)
T ss_pred EEECCccHH--hhcCCC-cCHHHHHHCC--CeEEEecCCC
Confidence 333322100 000011 1344444443 4788999964
No 76
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=65.23 E-value=1.2e+02 Score=34.86 Aligned_cols=107 Identities=17% Similarity=0.081 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHhhCC-CcEEEeeCCCCCCCCc---CC---cChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhC
Q 003194 213 DYIFISSLEVAQFLD-LPLQIHTGFGDKDLDL---RL---SNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVY 285 (840)
Q Consensus 213 d~~l~~l~e~~~e~g-lPvq~H~G~gd~~~~~---~~---~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~ 285 (840)
+..+..+.+.|.++| +++++|..-+...... .+ ..| ++.+.+. .+-+.++++.|+.+--..++..++..-
T Consensus 207 ~e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~~g~~~~p--~~~l~~~-G~l~~~~~l~H~~~l~~~~~~~l~~~g 283 (429)
T cd01303 207 EELLAALGKLAKEHPDLHIQTHISENLDEIAWVKELFPGARDY--LDVYDKY-GLLTEKTVLAHCVHLSEEEFNLLKERG 283 (429)
T ss_pred HHHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHHcCCCCCH--HHHHHHC-CCCCCCcEEEeCCCCCHHHHHHHHHcC
Confidence 345677889999999 9999999643211100 00 122 2222221 223568899999654444555555443
Q ss_pred CEeEecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 003194 286 PQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (840)
Q Consensus 286 pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (840)
-+|...+..-. ....| ...++++++.+ -++.+|||+.
T Consensus 284 ~~v~~~P~sn~--~l~~g-~~~~~~~~~~G--v~v~lGtD~~ 320 (429)
T cd01303 284 ASVAHCPTSNL--FLGSG-LFDVRKLLDAG--IKVGLGTDVG 320 (429)
T ss_pred CEEEECccchh--hhccC-CCCHHHHHHCC--CeEEEeccCC
Confidence 33333222110 00011 11345555543 3588999964
No 77
>PRK08417 dihydroorotase; Provisional
Probab=65.17 E-value=99 Score=35.14 Aligned_cols=167 Identities=16% Similarity=0.106 Sum_probs=84.6
Q ss_pred hhhHHHHHHHHHHhhCCCcEEEeeCCCC-----------CCCCc-CCcChh-----hhHHHHhhcCCCCcEEEEeCCCCc
Q 003194 211 LIDYIFISSLEVAQFLDLPLQIHTGFGD-----------KDLDL-RLSNPL-----HLRAILEDKRFSKCRFVLLHASYP 273 (840)
Q Consensus 211 l~d~~l~~l~e~~~e~glPvq~H~G~gd-----------~~~~~-~~~~P~-----~L~~l~~~~~~P~l~~VllH~g~p 273 (840)
+++..+..+++.++++|+||.+|.--.. .+... ..+.|. .+..++.--+.-+.++.+.|.+.+
T Consensus 127 ~~~~~l~~~~~~a~~~g~~V~~HaEd~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~~v~~~~~la~~~~~~lhi~hvS~~ 206 (386)
T PRK08417 127 LDANLLKVIAQYAKMLDVPIFCRCEDSSFDDSGVMNDGELSFELGLPGIPSIAETKEVAKMKELAKFYKNKVLFDTLALP 206 (386)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeCCCHHHhhHHHHhcChhhHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCH
Confidence 3444566677778888888888874310 00100 112232 222222211345689999999776
Q ss_pred hHHHHHHHHHhCC-EeEecccccCCCCcHH---------------HHHHHHHHHHHHCCCCcE-EEecCCCCCccc----
Q 003194 274 FSKEASYLAYVYP-QVYLDFGLAIPKLSVQ---------------GMISSIKELLELAPTKKV-MFSTDAYASPET---- 332 (840)
Q Consensus 274 ~~~e~~~la~~~p-NVyld~s~~~~~~~~~---------------g~~~~l~~~le~~~~~ki-lfgSD~~~~Pe~---- 332 (840)
-..++..-+.... +|..+++...-.++.. .-+..-..+.+..--+.| +++||.-+++..
T Consensus 207 ~~~~~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlR~~~d~~~L~~~l~~g~Id~i~SDHaP~~~~~K~~ 286 (386)
T PRK08417 207 RSLELLDKFKSEGEKLLKEVSIHHLILDDSACENFNTAAKLNPPLRSKEDRLALLEALKEGKIDFLTSLHSAKSNSKKDL 286 (386)
T ss_pred HHHHHHHHHHHCCCCEEEEechHHHeeCHHHhcCcCcccEECCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHccC
Confidence 5555444343332 5666665432111100 001111222232222445 589997655311
Q ss_pred -ch---hhHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhcCC
Q 003194 333 -YF---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (840)
Q Consensus 333 -~~---~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (840)
+| .+.-.....+.-++...+.++.++.. .+-.++..|++++|+++
T Consensus 287 ~~~~a~~G~~g~e~~~~~~~~~~v~~~~~~~~----~~~~~~t~~pA~~lgl~ 335 (386)
T PRK08417 287 AFDEAAFGIDSICEYFSLCYTYLVKEGIITWS----ELSRFTSYNPAQFLGLN 335 (386)
T ss_pred CHhHCCCCchHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHHHhCCC
Confidence 11 12112223344444456677888874 45666778999999985
No 78
>PRK07213 chlorohydrolase; Provisional
Probab=65.05 E-value=1.7e+02 Score=33.08 Aligned_cols=147 Identities=14% Similarity=0.082 Sum_probs=74.6
Q ss_pred hhhHHHHHHHHHHhhCCCcEEEeeCCCCCCCC----cCCcChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCC
Q 003194 211 LIDYIFISSLEVAQFLDLPLQIHTGFGDKDLD----LRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYP 286 (840)
Q Consensus 211 l~d~~l~~l~e~~~e~glPvq~H~G~gd~~~~----~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~p 286 (840)
+.+..+..+++.|+++|+|+.+|.+-...... ..-..| +..+.+.+-.|+ ++.|+.+--..+...|+..--
T Consensus 176 ~s~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~G~~~--v~~~~~~G~~~~---~i~H~~~~~~~~i~~la~~g~ 250 (375)
T PRK07213 176 YSDEELKFICKECKREKKIFSIHAAEHKGSVEYSLEKYGMTE--IERLINLGFKPD---FIVHATHPSNDDLELLKENNI 250 (375)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHHHHcCCCh--HHHHHhcCCCCC---EEEECCCCCHHHHHHHHHcCC
Confidence 34557788999999999999999975421100 001123 333444222344 358986544455566665433
Q ss_pred EeEecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCCCCcccchhhHHHHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 003194 287 QVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVA 366 (840)
Q Consensus 287 NVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~ 366 (840)
+|.+.+..-... ..|. ..++++++.+ =++.+|||+..+. ....+++.. ... ....++.. +..
T Consensus 251 ~v~~~P~sn~~l--~~g~-~~v~~l~~~G--v~v~lGTD~~~~~-----~~~~~~e~~-~~~----~~~~~~~~---~~l 312 (375)
T PRK07213 251 PVVVCPRANASF--NVGL-PPLNEMLEKG--ILLGIGTDNFMAN-----SPSIFREME-FIY----KLYHIEPK---EIL 312 (375)
T ss_pred cEEECCcchhhh--ccCC-ccHHHHHHCC--CEEEEeeCCCCCc-----hHhHHHHHH-HHH----HHhCcCHH---HHH
Confidence 444443321100 0111 2345555543 3889999964321 112232221 111 11245643 344
Q ss_pred HHHHHHhHHHHhcCC
Q 003194 367 KDIFALNAAQFYKIN 381 (840)
Q Consensus 367 ~~Il~~NA~rly~l~ 381 (840)
+ ..-.|+++.++++
T Consensus 313 ~-~aT~~gA~~lg~~ 326 (375)
T PRK07213 313 K-MATINGAKILGLI 326 (375)
T ss_pred H-HHHHHHHHHhCCC
Confidence 4 4447777888885
No 79
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=65.01 E-value=43 Score=30.30 Aligned_cols=95 Identities=19% Similarity=0.189 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHhcCceeeeeeeeEEEEEeecccCCCCCcccCCCCCcccCCccccchHHHHHHHHHHHhCCCceeee
Q 003194 506 PREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQL 585 (840)
Q Consensus 506 PR~~Lkr~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~ 585 (840)
|...-+++++.+++ .|..+..-.++||++.-+. ..-++.+...+.+.|..|+..
T Consensus 2 ~~~~n~~vl~~L~~-~Gddl~~~r~ieh~~~f~~-------------------------~~~~~~f~~~~~~~g~~v~~~ 55 (104)
T PF06877_consen 2 QIIENREVLEALEE-DGDDLSKPRPIEHWFYFED-------------------------EEDAEKFAEELEKLGYEVESA 55 (104)
T ss_dssp HHHHHHHHHHHHHH-HT--TTS-EEEEEEEEES--------------------------HHHHHHHHHHHHHHS---B--
T ss_pred cHHHHHHHHHHHHh-cCCCCCCCeEEEEEEEeCC-------------------------HHHHHHHHHHHHHCCCEEEEe
Confidence 34456788888984 6999999999999887541 245677888899999999887
Q ss_pred cc--CCCCCceEEecCcchHHHHHhHHHHHHHHHHHHHHHcCCe
Q 003194 586 HA--EAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLL 627 (840)
Q Consensus 586 h~--E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~Gl~ 627 (840)
.. |-+.+.|.+.+.....+...+ +.-.-.-+-.+|+++|..
T Consensus 56 ~~~~~d~~~~~~~~~~~~~~~~~~~-I~~~~~~l~~lA~~~~g~ 98 (104)
T PF06877_consen 56 EEDEEDGDGPYCLDISREMVLDYED-INAITQELEDLAKEFGGE 98 (104)
T ss_dssp --B-SS-SSBEEEEEEEEE-S-HHH-HHHHHHHHHHHHHHHT-E
T ss_pred ecccCCCCceEEEEEEEecCCCHHH-HHHHHHHHHHHHHHhCcE
Confidence 75 678899999998877665533 333334455677777654
No 80
>PRK09061 D-glutamate deacylase; Validated
Probab=64.97 E-value=1.5e+02 Score=35.20 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=21.5
Q ss_pred HHHHHHHhhhhcC-CCCChhHHHHHHHHHHHHhHHHHhc
Q 003194 342 EVVFSVLRDTCID-EDLSVGEAIEVAKDIFALNAAQFYK 379 (840)
Q Consensus 342 ~~l~~~l~~~v~~-g~l~~~ea~~~~~~Il~~NA~rly~ 379 (840)
..+.+++..++.+ +.+|.. +.. +.+-.|.+++++
T Consensus 400 ~~~~~~l~~~v~~~~~isl~---~ai-~~~T~~pA~~lg 434 (509)
T PRK09061 400 GTFARFLREYVRERKALSLL---EAI-RKCTLMPAQILE 434 (509)
T ss_pred cchHHHHHHHHhhcccCCHH---HHH-HHHHHHHHHHhc
Confidence 3455666777765 358874 344 445567777888
No 81
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=64.41 E-value=1.2e+02 Score=34.90 Aligned_cols=35 Identities=6% Similarity=0.163 Sum_probs=24.0
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhcCCC
Q 003194 344 VFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (840)
Q Consensus 344 l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~~ 382 (840)
+..++...+.++.++.. .+-+++..|.+++|++..
T Consensus 345 l~~l~~~~v~~~~~~~~----~~~~~~t~~pa~~~gl~~ 379 (454)
T TIGR02033 345 MTLLFDEGVATGRITLE----KFVELTSTNPAKIFNMYP 379 (454)
T ss_pred HHHHHHHHHHcCCCCHH----HHHHHHhhHHHHHcCCCC
Confidence 33445555666778874 556677789999999853
No 82
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=63.67 E-value=70 Score=37.06 Aligned_cols=31 Identities=13% Similarity=0.247 Sum_probs=21.4
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhcC
Q 003194 346 SVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKI 380 (840)
Q Consensus 346 ~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l 380 (840)
.++...+.++.++.. .+-+.+..|++++|++
T Consensus 339 ~~~~~~~~~~~l~~~----~~~~~~t~~pA~~~g~ 369 (443)
T TIGR03178 339 VMFDEAVQKRGLPLE----DIARLMATNPAKRFGL 369 (443)
T ss_pred HHHHHHHHhcCCCHH----HHHHHHhHHHHHHcCC
Confidence 344455566788874 4555667889999998
No 83
>PRK08323 phenylhydantoinase; Validated
Probab=63.50 E-value=81 Score=36.55 Aligned_cols=32 Identities=6% Similarity=0.236 Sum_probs=21.6
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhcCC
Q 003194 346 SVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (840)
Q Consensus 346 ~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (840)
.++...+..+.++.. .+-+++..|.+++|++.
T Consensus 345 ~l~~~~~~~~~~~~~----~~~~~~t~~pA~~lgl~ 376 (459)
T PRK08323 345 LLFSEGVMTGRITLN----RFVELTSTNPAKIFGLY 376 (459)
T ss_pred HHHHHHHHcCCCCHH----HHHHHHhhHHHHHhCCC
Confidence 334444556778874 45556678999999984
No 84
>PRK06189 allantoinase; Provisional
Probab=62.92 E-value=71 Score=37.14 Aligned_cols=116 Identities=17% Similarity=0.184 Sum_probs=58.0
Q ss_pred CCCCcEEEEeCCCCchHHHHHHHHHhC-CEeEecccccCCC------------------C-cHHHHHHHHHHHHHHCCCC
Q 003194 259 RFSKCRFVLLHASYPFSKEASYLAYVY-PQVYLDFGLAIPK------------------L-SVQGMISSIKELLELAPTK 318 (840)
Q Consensus 259 ~~P~l~~VllH~g~p~~~e~~~la~~~-pNVyld~s~~~~~------------------~-~~~g~~~~l~~~le~~~~~ 318 (840)
+..++++.+.|.+.+...++..-++.. .+|+++++..... + +... +..|.+.+..+-
T Consensus 229 ~~~g~~~hi~HiSt~~~~~~i~~~k~~g~~vt~ev~ph~L~l~~~~~~~~~~~~~~~Pplr~~~~-~~~L~~~l~~G~-- 305 (451)
T PRK06189 229 QETGCPLHFVHISSGKAVALIAEAKKRGVDVSVETCPHYLLFTEEDFERIGAVAKCAPPLRSRSQ-KEELWRGLLAGE-- 305 (451)
T ss_pred HHhCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEeCHHHhhcCHhHhhCcCCceEEeCCCCChhh-HHHHHHHHhCCC--
Confidence 356788889998765444444333322 3566665542211 1 1111 234444444322
Q ss_pred cEEEecCCCCCccc------chh---hHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhcCC
Q 003194 319 KVMFSTDAYASPET------YFL---GAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (840)
Q Consensus 319 kilfgSD~~~~Pe~------~~~---~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (840)
-...+||..++... +|. +.-..-..+.-++...+.++.++.. .+-.++..|++++|+++
T Consensus 306 i~~i~sDh~p~~~~~K~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~----~~~~~~t~npA~~lgl~ 373 (451)
T PRK06189 306 IDMISSDHSPCPPELKEGDDFFLVWGGISGGQSTLLVMLTEGYIERGIPLE----TIARLLATNPAKRFGLP 373 (451)
T ss_pred ceEEECCCCCCCHHHcCcCCcccCCCCceeHHHHHHHHHHHHHhcCCCCHH----HHHHHHhhhHHHHhCCC
Confidence 23599996443210 010 0000011233344444566778874 45556669999999984
No 85
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=62.46 E-value=9.9 Score=35.22 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=27.9
Q ss_pred ccceeeecccCCCCCCCCCCHHHHHHHHHH-HHhCCCCCcCCchhhhhHHHHHHHHHHhhCCCcEEEeeCCC
Q 003194 167 VGLKSIAAYRSGLEINPHVTKKDAEEGLAE-DLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGFG 237 (840)
Q Consensus 167 vgfks~~~y~~Gl~~~p~~~~~ea~~~~~r-~l~~~~~~~~~~~~l~d~~l~~l~e~~~e~glPvq~H~G~g 237 (840)
.|||+|+|-|-.-+-...++.++.++..+. .+.- ...++....+..-.+..+.+...+...||.+|+..|
T Consensus 26 ~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y-~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~hC~sG 96 (110)
T PF04273_consen 26 QGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQY-VHIPVDGGAITEEDVEAFADALESLPKPVLAHCRSG 96 (110)
T ss_dssp CT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EE-EE----TTT--HHHHHHHHHHHHTTTTSEEEE-SCS
T ss_pred CCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeE-EEeecCCCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 689999998755443222222211111111 1110 011222233444445555566667777888888766
No 86
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=59.38 E-value=24 Score=30.07 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhCCCceeeeccCCCCCceEEecCcchHHHHHhHHHHHHHHHHHHHHHcCCeeEe
Q 003194 566 PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATF 630 (840)
Q Consensus 566 ~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~Gl~ATF 630 (840)
-++.++...|.+.|.+|+.++.-.-.|+|-+.+.-.-+ .|+.-.++..+++++++.|+.+.|
T Consensus 14 Giv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~---~~~~~~l~~~L~~l~~~~~l~v~v 75 (76)
T PF13740_consen 14 GIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP---EDSLERLESALEELAEELGLDVSV 75 (76)
T ss_dssp THHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES---HHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred cHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC---cccHHHHHHHHHHHHHHCCcEEEE
Confidence 47888999999999999999999899999888776644 567788999999999999998875
No 87
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=58.12 E-value=1.3e+02 Score=33.86 Aligned_cols=141 Identities=24% Similarity=0.236 Sum_probs=66.3
Q ss_pred cEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCCCch--HHHHHHHHHhCCEeEecc-cccCCCC-cHHHH
Q 003194 229 PLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF--SKEASYLAYVYPQVYLDF-GLAIPKL-SVQGM 304 (840)
Q Consensus 229 Pvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~--~~e~~~la~~~pNVyld~-s~~~~~~-~~~g~ 304 (840)
|+.+|++.+..+ ...+.++++..-...-.++..|+...- ..+...++..-..+.++. +...... ....
T Consensus 192 ~i~vH~~~~~~~-------l~~v~~~l~~~Gv~~~~~~~~H~~~~~~~~~~~~~~~~~G~~~~v~~~~~~~~~~~~~~~- 263 (388)
T PRK10657 192 IVHVHMGDGKKG-------LQPLFELLENTDIPISQFLPTHVNRNEPLFEQALEFAKKGGVIDLTTSDPDFLGEGEVAP- 263 (388)
T ss_pred EEEEEeCCchHH-------HHHHHHHHHhcCCCcceeeCcccCCCHHHHHHHHHHHHcCCeEEEecCCCcccccCccCH-
Confidence 899998742111 112323332223333357778875421 123333443322333442 2111000 0011
Q ss_pred HHHHHHHHHHCC-CCcEEEecCCCC-Ccccc------hhhHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHH
Q 003194 305 ISSIKELLELAP-TKKVMFSTDAYA-SPETY------FLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQ 376 (840)
Q Consensus 305 ~~~l~~~le~~~-~~kilfgSD~~~-~Pe~~------~~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~r 376 (840)
...+.++++.+. .+|++++||... .|... +.+.-.. ..+...+...+....++. +.+-+++-.|+++
T Consensus 264 ~~~l~~~~~~G~~~d~v~l~tD~~~~~~~~~~~g~~~~~g~~~~-~~l~~~~~~~~~~~gis~----~~~l~~aT~npA~ 338 (388)
T PRK10657 264 AEALKRALEAGVPLSRVTLSSDGNGSLPKFDEDGNLVGLGVGSV-ESLLEEVRELVKDEGLPL----EDALKPLTSNVAR 338 (388)
T ss_pred HHHHHHHHHcCCChhheEEECCCCCCCceeccCCCEeccCcCch-hhHHHHHHHHHHhcCCCH----HHHHHHHHHHHHH
Confidence 245667777763 799999999522 12100 0000000 111222223333345776 4567888899999
Q ss_pred HhcCCC
Q 003194 377 FYKINL 382 (840)
Q Consensus 377 ly~l~~ 382 (840)
+|++..
T Consensus 339 ~lg~~~ 344 (388)
T PRK10657 339 FLKLNG 344 (388)
T ss_pred HhCCCC
Confidence 999853
No 88
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=57.98 E-value=1.2e+02 Score=34.88 Aligned_cols=129 Identities=19% Similarity=0.214 Sum_probs=65.6
Q ss_pred HHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCEeEeccccc
Q 003194 216 FISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLA 295 (840)
Q Consensus 216 l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~pNVyld~s~~ 295 (840)
+...++.+.++|+|+..|+- ++. ...|...++. -+.. .|..... .++..... ..+|+++...
T Consensus 123 l~~~i~~A~~~g~~v~~Ha~-g~~--------~~~L~a~l~a--Gi~~----dH~~~~~-eea~e~l~--~G~~i~i~~g 184 (422)
T cd01295 123 MLAKIQAAKKAGKPVDGHAP-GLS--------GEELNAYMAA--GIST----DHEAMTG-EEALEKLR--LGMYVMLREG 184 (422)
T ss_pred HHHHHHHHHhCCCEEEEeCC-CCC--------HHHHHHHHHc--CCCC----CcCCCcH-HHHHHHHH--CCCEEEEECc
Confidence 45556788899999999982 211 1234445542 2211 3764432 33333332 4677766422
Q ss_pred CCCCcHHHHHHHHHHHHHHCC---CCcEEEecCCCCCcccchhhHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHH
Q 003194 296 IPKLSVQGMISSIKELLELAP---TKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFAL 372 (840)
Q Consensus 296 ~~~~~~~g~~~~l~~~le~~~---~~kilfgSD~~~~Pe~~~~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~ 372 (840)
+. ...++.+++..+ ..+++++||++ .|.. +.. +-.+..++...++. .++. +.+-+....
T Consensus 185 ~~-------~~~~~~~~~~l~~~~~~~i~l~TD~~-~~~~-~~~----~g~~~~v~r~a~~~-g~s~----~eal~~aT~ 246 (422)
T cd01295 185 SI-------AKNLEALLPAITEKNFRRFMFCTDDV-HPDD-LLS----EGHLDYIVRRAIEA-GIPP----EDAIQMATI 246 (422)
T ss_pred cc-------HhhHHHHHHhhhhccCCeEEEEcCCC-Cchh-hhh----cchHHHHHHHHHHc-CCCH----HHHHHHHhH
Confidence 21 112223333333 47999999974 3321 110 00111122222222 4665 355667778
Q ss_pred hHHHHhcC
Q 003194 373 NAAQFYKI 380 (840)
Q Consensus 373 NA~rly~l 380 (840)
|++++|++
T Consensus 247 n~A~~~gl 254 (422)
T cd01295 247 NPAECYGL 254 (422)
T ss_pred HHHHHcCC
Confidence 99999998
No 89
>PRK02382 dihydroorotase; Provisional
Probab=57.45 E-value=1e+02 Score=35.66 Aligned_cols=156 Identities=19% Similarity=0.210 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhhCCCcEEEeeCCCC------------CCCCc-CCcChh-----hhHHHHhhcCCCCcEEEEeCCCCchH
Q 003194 214 YIFISSLEVAQFLDLPLQIHTGFGD------------KDLDL-RLSNPL-----HLRAILEDKRFSKCRFVLLHASYPFS 275 (840)
Q Consensus 214 ~~l~~l~e~~~e~glPvq~H~G~gd------------~~~~~-~~~~P~-----~L~~l~~~~~~P~l~~VllH~g~p~~ 275 (840)
..+..+++.++++|+|+.+|+.-.+ .+... ..+.|. .+..++..-+..++++.+.|.+.+..
T Consensus 161 ~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~g~~~~~~~~~~~p~~~E~~av~~~~~la~~~g~~~hi~h~ss~~~ 240 (443)
T PRK02382 161 ELFEEALAEAARLGVLATVHAEDEDLFDELAKLLKGDADADAWSAYRPAAAEAAAVERALEVASETGARIHIAHISTPEG 240 (443)
T ss_pred HHHHHHHHHHHhcCCeEEEecCCHHHHHHhhHhhcCCCCHhhCCCcCCHHHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 3456667777788888888876421 00100 112332 12222221245779999999987665
Q ss_pred HHHHHHHHhCCEeEecccccC------------------CCC-cHHHHHHHHHHHHHHCCCCcEEEecCCCCCccc----
Q 003194 276 KEASYLAYVYPQVYLDFGLAI------------------PKL-SVQGMISSIKELLELAPTKKVMFSTDAYASPET---- 332 (840)
Q Consensus 276 ~e~~~la~~~pNVyld~s~~~------------------~~~-~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~---- 332 (840)
.++..-+ + |..+++... |-+ +... +..|-+.+..+-++ +.+||..++...
T Consensus 241 ~~~i~~~---~-vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlr~~~d-~~aL~~~l~~g~i~--~i~sDh~P~~~~~K~~ 313 (443)
T PRK02382 241 VDAARRE---G-ITCEVTPHHLFLSRRDWERLGTFGKMNPPLRSEKR-REALWERLNDGTID--VVASDHAPHTREEKDA 313 (443)
T ss_pred HHHHHHC---C-cEEEEchhhhhcCHHHHhccCceEEEcCCCCChHH-HHHHHHHHhCCCCC--EEEcCCCCCCHHHhcC
Confidence 4444322 2 444443321 111 1111 22333333322211 289996544210
Q ss_pred -ch---hhHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhcCC
Q 003194 333 -YF---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (840)
Q Consensus 333 -~~---~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (840)
+| .+.-.....+. ++-..+.++.++.. .+-+.+..|++++|+++
T Consensus 314 ~~~~~~~G~~g~e~~~~-~~~~~~~~~~~~l~----~~~~~~t~~pA~~~g~~ 361 (443)
T PRK02382 314 DIWDAPSGVPGVETMLP-LLLAAVRKNRLPLE----RVRDVTAANPARIFGLD 361 (443)
T ss_pred ChhhCCCCcccHHHHHH-HHHHHHHcCCCCHH----HHHHHHhHHHHHHcCCC
Confidence 00 01000111122 22245667888874 45556669999999985
No 90
>PRK13404 dihydropyrimidinase; Provisional
Probab=55.11 E-value=1.4e+02 Score=34.97 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=23.4
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhcCC
Q 003194 344 VFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (840)
Q Consensus 344 l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (840)
+..++...+..+.++.. .+-+++..|++|+|++.
T Consensus 352 l~~ll~~~v~~~~ls~~----~~~~~~t~~pA~~lgl~ 385 (477)
T PRK13404 352 LPLLFSEGVVKGRISLN----RFVALTSTNPAKLYGLY 385 (477)
T ss_pred HHHHHHHHHHcCCCCHH----HHHHHHHHHHHHHhCCC
Confidence 33445555556678874 56667788999999984
No 91
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.34 E-value=23 Score=31.05 Aligned_cols=67 Identities=13% Similarity=0.225 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhCCCceeeeccCCCCCceEEecCcchHHHHHhHHHHHHHHHHHHHHHcCCeeEeccc
Q 003194 566 PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPK 633 (840)
Q Consensus 566 ~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~Gl~ATFmpK 633 (840)
-++.++.+.|.+.|++|..++.-.-.|+|-+.+.-.-+ ...++.-.++..+++++.+.|+..++-+.
T Consensus 13 Giva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~-~~~~~~~~L~~~l~~l~~~~~l~~~i~~~ 79 (88)
T cd04872 13 GIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS-ESNLDFAELQEELEELGKELGVKIRIQHE 79 (88)
T ss_pred CHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC-CCCCCHHHHHHHHHHHHHHcCCEEEEEhH
Confidence 47889999999999999999988888888776655533 11355778899999999999999998665
No 92
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=53.33 E-value=30 Score=42.93 Aligned_cols=38 Identities=11% Similarity=0.034 Sum_probs=30.0
Q ss_pred eeccCCCCCceEEecCcc-hHHHHHhHHHHHHHHHHHHH
Q 003194 584 QLHAEAGKGQFEIALGHT-VAAKAADNLIFTREVLRAVA 621 (840)
Q Consensus 584 ~~h~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~r~~ik~vA 621 (840)
.+.+|..-.|.|+..+++ +.-++.+.+...+..+.+.+
T Consensus 53 ~ittdfsesqlE~iTp~~~~~~~~~~~L~~l~~~~~~~~ 91 (752)
T PRK02471 53 YIQTDFSESQLELITPVADSIEEVYRFLGALHDVASRSL 91 (752)
T ss_pred CcCchhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 456677778889988887 55667888888888888887
No 93
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=51.89 E-value=1.9e+02 Score=34.54 Aligned_cols=18 Identities=6% Similarity=-0.033 Sum_probs=14.4
Q ss_pred HHHHHHHHHhHHHHhcCC
Q 003194 364 EVAKDIFALNAAQFYKIN 381 (840)
Q Consensus 364 ~~~~~Il~~NA~rly~l~ 381 (840)
+.+-.++..|.+++|+++
T Consensus 430 eei~~mtT~nPAKiLGL~ 447 (541)
T cd01304 430 YEIAIMTRAGPAKLLGLS 447 (541)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 346777889999999995
No 94
>PRK00194 hypothetical protein; Validated
Probab=51.45 E-value=25 Score=30.81 Aligned_cols=66 Identities=14% Similarity=0.239 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhCCCceeeeccCCCCCceEEecCcchHHHHHhHHHHHHHHHHHHHHHcCCeeEecc
Q 003194 566 PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVP 632 (840)
Q Consensus 566 ~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~Gl~ATFmp 632 (840)
-++.++.+.|.+.|++|..++.....|.|.+.+.-.-+ ...++.-.++..+++++.+.|+.++|-+
T Consensus 15 Giva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 80 (90)
T PRK00194 15 GIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS-ESKKDFAELKEELEELGKELGVKIRIQH 80 (90)
T ss_pred CHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec-CCCCCHHHHHHHHHHHHHHcCCEEEEEh
Confidence 48889999999999999999998888888774433211 1123356778889999999999999854
No 95
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=51.41 E-value=1.7e+02 Score=33.08 Aligned_cols=69 Identities=25% Similarity=0.381 Sum_probs=41.1
Q ss_pred HHHHHHHHHHC-CCCcEEEecCCC-CCcccch---------hhHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHh
Q 003194 305 ISSIKELLELA-PTKKVMFSTDAY-ASPETYF---------LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALN 373 (840)
Q Consensus 305 ~~~l~~~le~~-~~~kilfgSD~~-~~Pe~~~---------~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~N 373 (840)
...++.+++.. +.+|++++||+. ..|.... .+... +-..+...++.+.++. +.+-+++-.|
T Consensus 263 ~~~l~~~~~~g~~~d~i~l~TD~~~~~p~~~~~g~~~~~g~~~~~~----~~~~~~~~v~~~~i~~----~~al~~~T~n 334 (387)
T cd01308 263 SEALKRLLEQGVPLERITFSSDGNGSLPKFDENGNLVGLGVGSVDT----LLREVREAVKCGDIPL----EVALRVITSN 334 (387)
T ss_pred HHHHHHHHHhCCCCCcEEEEECCCCCcccCccCCeEEecCcCcHHH----HHHHHHHHHHhCCCCH----HHHHHHHHHH
Confidence 35667777775 568999999952 1121100 01111 1122334455567887 3566777889
Q ss_pred HHHHhcCC
Q 003194 374 AAQFYKIN 381 (840)
Q Consensus 374 A~rly~l~ 381 (840)
++++|++.
T Consensus 335 pA~~lg~~ 342 (387)
T cd01308 335 VARILKLR 342 (387)
T ss_pred HHHHhCCC
Confidence 99999985
No 96
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=50.27 E-value=75 Score=37.11 Aligned_cols=68 Identities=22% Similarity=0.200 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHH
Q 003194 211 LIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLA 282 (840)
Q Consensus 211 l~d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la 282 (840)
+.+..+..+++.+.++|++|.+|+. |+...+. . --.+..+....-+++.+.++.|+...-..+...++
T Consensus 292 ~~~e~l~~~~~~a~~~g~~v~~Ha~-gd~~i~~--~-l~~~~~~~~~~g~~~~r~~i~H~~~~~~~~~~~l~ 359 (479)
T cd01300 292 ISPEELEELVRAADEAGLQVAIHAI-GDRAVDT--V-LDALEAALKDNPRADHRHRIEHAQLVSPDDIPRFA 359 (479)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEe-cHHHHHH--H-HHHHHHHHHhcCCCCCCceeeecccCCHHHHHHHH
Confidence 4456788899999999999999995 3221100 0 00122233311123678899999654433333443
No 97
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.75 E-value=39 Score=28.57 Aligned_cols=65 Identities=12% Similarity=0.128 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhCCCceeeeccCCCCCceEEecCcchHHHHHhHHHHHHHHHHHHHHHcCCeeEecc
Q 003194 566 PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVP 632 (840)
Q Consensus 566 ~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~Gl~ATFmp 632 (840)
-++.++.+.|.+.|++|+.++.-.-.|+|-+.+.-.-| ...+.-.++..+..++++.|+.++.-|
T Consensus 11 Giv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p--~~~~~~~l~~~l~~l~~~l~l~i~~~~ 75 (75)
T cd04870 11 GLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP--DSADSEALLKDLLFKAHELGLQVRFEP 75 (75)
T ss_pred CHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC--CCCCHHHHHHHHHHHHHHcCceEEEeC
Confidence 37889999999999999999777667777666544322 112467788999999999999988744
No 98
>PRK08204 hypothetical protein; Provisional
Probab=48.41 E-value=3e+02 Score=31.71 Aligned_cols=103 Identities=18% Similarity=0.229 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCEeEeccc
Q 003194 214 YIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFG 293 (840)
Q Consensus 214 ~~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~pNVyld~s 293 (840)
..+..+++.+.++|+++++|..-+..+ .....++.+.+. .+.+.++++.|+.+-...++..|+.. ++++-..
T Consensus 201 e~l~~~~~~A~~~g~~v~~H~~e~~~~-----~~~~~~~~l~~~-g~~~~~~~i~H~~~~~~~~~~~la~~--g~~v~~~ 272 (449)
T PRK08204 201 EVARADFRLARELGLPISMHQGFGPWG-----ATPRGVEQLHDA-GLLGPDLNLVHGNDLSDDELKLLADS--GGSFSVT 272 (449)
T ss_pred HHHHHHHHHHHHcCCcEEEEEcCCCcc-----cCCCHHHHHHHC-CCCCCCeEEEecCCCCHHHHHHHHHc--CCCEEEC
Confidence 345677888999999999999644221 111123334442 34567788899976544455555543 2222111
Q ss_pred ccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 003194 294 LAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (840)
Q Consensus 294 ~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (840)
-..+.....+ ...++++++.+ =++.+|||+.
T Consensus 273 P~~~~~~g~~-~~~~~~~~~~G--v~v~lGtD~~ 303 (449)
T PRK08204 273 PEIEMMMGHG-YPVTGRLLAHG--VRPSLGVDVV 303 (449)
T ss_pred hHHHhhhcCC-CCcHHHHHhcC--CceeeccccC
Confidence 0000000001 01244555543 4788999964
No 99
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.98 E-value=42 Score=31.54 Aligned_cols=70 Identities=14% Similarity=0.048 Sum_probs=35.4
Q ss_pred ccceeeecccCCCCCCCCCCHHHHHHHHHHH-HhCCCCCcCCchhhhhHHHHHHHHHHhhCCCcEEEeeCCC
Q 003194 167 VGLKSIAAYRSGLEINPHVTKKDAEEGLAED-LRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGFG 237 (840)
Q Consensus 167 vgfks~~~y~~Gl~~~p~~~~~ea~~~~~r~-l~~~~~~~~~~~~l~d~~l~~l~e~~~e~glPvq~H~G~g 237 (840)
.|||||+|-|-.-+-+-+++-+..++..+++ +. -...++....+...-+.-+-++..+.+-||.-|+-.|
T Consensus 27 ~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~~~~iT~~dV~~f~~Al~eaegPVlayCrsG 97 (130)
T COG3453 27 LGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVTGGGITEADVEAFQRALDEAEGPVLAYCRSG 97 (130)
T ss_pred hccceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecCCCCCCHHHHHHHHHHHHHhCCCEEeeecCC
Confidence 6899999987655544334433333333322 10 0111222222222223334456667888888887655
No 100
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=46.16 E-value=4.3e+02 Score=28.87 Aligned_cols=93 Identities=20% Similarity=0.101 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhCC-CcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCCCc-hH-HHHHHHHHh------C
Q 003194 215 IFISSLEVAQFLD-LPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYP-FS-KEASYLAYV------Y 285 (840)
Q Consensus 215 ~l~~l~e~~~e~g-lPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p-~~-~e~~~la~~------~ 285 (840)
.+.+.++.+.+.| +++.+|.|-. ..|..+.+.+. .. .--+.|+-+- .. .....++.. .
T Consensus 154 ~f~~~~~~ar~~g~l~~t~HaGE~--------~~~~~v~~~~~--~~---~~RIgHg~~~~~~p~~~~~l~~~~i~ie~C 220 (305)
T cd00443 154 DFYSYYEYARRLGLLGLTLHCGET--------GNREELLQALL--LL---PDRIGHGIFLLKHPELIYLVKLRNIPIEVC 220 (305)
T ss_pred HHHHHHHHHHHcCCcceEEeecCC--------CChHHHHHHHH--hc---cceeeceEecCCCHHHHHHHHHcCCEEEEC
Confidence 5678999999999 9999999953 22334444444 22 3334676211 11 222333322 1
Q ss_pred --CEeEecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCCCC
Q 003194 286 --PQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYAS 329 (840)
Q Consensus 286 --pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~ 329 (840)
.|+++.....+. ...++.+++.+ -++..+||.+.+
T Consensus 221 P~SN~~~~~~~~~~-------~hP~~~~~~~G--~~v~i~TDd~~~ 257 (305)
T cd00443 221 PTSNVVLGTVQSYE-------KHPFMRFFKAG--LPVSLSTDDPGI 257 (305)
T ss_pred cchhhhhcCCCChh-------hChHHHHHHCC--CeEEEeCCCCcc
Confidence 255554432111 12456666654 388899996654
No 101
>PRK08418 chlorohydrolase; Provisional
Probab=45.46 E-value=2.7e+02 Score=31.93 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCCCCCCC--------------------cCCcChh-hhHHHHhhcCCCCcEEEEeCCC
Q 003194 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLD--------------------LRLSNPL-HLRAILEDKRFSKCRFVLLHAS 271 (840)
Q Consensus 213 d~~l~~l~e~~~e~glPvq~H~G~gd~~~~--------------------~~~~~P~-~L~~l~~~~~~P~l~~VllH~g 271 (840)
+.++..+.+.+.++|+|+++|..-+..... .+...|. +|+.+ . ..+.++.|+.
T Consensus 189 ~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~~~G~~~~~~~~~~~~~~~~~~pv~~l~~~-g-----~~~~~~~H~~ 262 (408)
T PRK08418 189 PILAKKALQLAKKENLLVSTHFLESKAEREWLEESKGWFKKFFEKFLKEPKPLYTPKEFLELF-K-----GLRTLFTHCV 262 (408)
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHhccCchhhhhhhhcccccccCCHHHHHHHh-C-----CCCeEEEecc
Confidence 345677789999999999999986321000 0011343 23322 1 2366899997
Q ss_pred CchHHHHHHHHHhCCEeEecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 003194 272 YPFSKEASYLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (840)
Q Consensus 272 ~p~~~e~~~la~~~pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (840)
+--..+...|+..--+|-..+..-.. . ..| ...++++++.+ =++.+|||+.
T Consensus 263 ~~~~~di~~la~~g~~v~~cP~sn~~-l-g~g-~~p~~~~~~~G--i~v~lGtD~~ 313 (408)
T PRK08418 263 YASEEELEKIKSKNASITHCPFSNRL-L-SNK-ALDLEKAKKAG--INYSIATDGL 313 (408)
T ss_pred cCCHHHHHHHHHcCCcEEECHhHHHH-h-cCC-CccHHHHHhCC--CeEEEeCCCC
Confidence 76666777777643333222211000 0 001 11344555543 4788999963
No 102
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=45.31 E-value=1.5e+02 Score=33.30 Aligned_cols=111 Identities=14% Similarity=0.070 Sum_probs=58.6
Q ss_pred CCcEEEEeCCCCchHHHHHHHHHhC-CEeEecccccCCCC-----------------cHHHHHHHHHHHHHHCCCCcEEE
Q 003194 261 SKCRFVLLHASYPFSKEASYLAYVY-PQVYLDFGLAIPKL-----------------SVQGMISSIKELLELAPTKKVMF 322 (840)
Q Consensus 261 P~l~~VllH~g~p~~~e~~~la~~~-pNVyld~s~~~~~~-----------------~~~g~~~~l~~~le~~~~~kilf 322 (840)
-+.++++.|.+.+...++...+... .+|+.+++...-.+ +++. +..|-+.+.. .| +.
T Consensus 147 ~g~~lhi~HiSt~~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~~~~k~~PPLR~~~d-r~aL~~~l~~--id--~i 221 (344)
T cd01316 147 HNRSIHICHVSSKEEINLIRLAKARGLKVTCEVSPHHLFLSQDDLPRGQYEVRPFLPTRED-QEALWENLDY--ID--CF 221 (344)
T ss_pred HCCCEEEEeCCCHHHHHHHHHHHHCCCcEEEEechHHeeccHHHhhcCCceeCCCCcCHHH-HHHHHHHHhc--CC--EE
Confidence 4677888887665554444444333 25666665432111 1111 2233333321 22 68
Q ss_pred ecCCCCCccc------chhhHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhcCC
Q 003194 323 STDAYASPET------YFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (840)
Q Consensus 323 gSD~~~~Pe~------~~~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (840)
+||.-++... .+.+.-.+-..+.-++ ..|.+|.++++ ..-+++..|.+++|||.
T Consensus 222 ~SDHaP~~~~~K~~~~a~~G~~g~e~~lpl~~-~~v~~~~i~l~----~l~~~~s~nPAk~~gl~ 281 (344)
T cd01316 222 ATDHAPHTLAEKTGNKPPPGFPGVETSLPLLL-TAVHEGRLTIE----DIVDRLHTNPKRIFNLP 281 (344)
T ss_pred EcCCCCCCHHHhcCCCCCCCcccHHHHHHHHH-HHHHcCCCCHH----HHHHHHHHhHHHHhCCC
Confidence 9996554421 1112112222233233 46778889984 56778889999999984
No 103
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=44.97 E-value=19 Score=39.49 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=41.0
Q ss_pred chHHHHHHHHHHHh-CCCceeeeccCCCCCceEEecCcchHHHHHhHHHHHHHHHHHHHHHcCCeeEeccc
Q 003194 564 VSPVFQEVLADLHS-LNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPK 633 (840)
Q Consensus 564 ~~~~~~~i~~~l~~-~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~Gl~ATFmpK 633 (840)
..-|.+.+++.|-+ .-||=-.+..| --+|.++.+|+-+|.+|.+.|..-||||-
T Consensus 248 lrGf~rAMvKtMt~alkiPHF~y~dE----------------In~~sLvklr~elk~~a~e~~IKltfmPf 302 (474)
T KOG0558|consen 248 LRGFSRAMVKTMTEALKIPHFGYVDE----------------INCDSLVKLRQELKENAKERGIKLTFMPF 302 (474)
T ss_pred chhHHHHHHHHHHHHhcCCccccccc----------------cChHHHHHHHHHHhhhhhhcCceeeehHH
Confidence 34566777777755 45665444433 24799999999999999999999999995
No 104
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=44.28 E-value=1.2e+02 Score=35.18 Aligned_cols=107 Identities=17% Similarity=0.034 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCCCCCCCc----CCcChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCEe
Q 003194 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288 (840)
Q Consensus 213 d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~----~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~pNV 288 (840)
+..+..+.+.+.++|+|+++|..-+...... .-..| ++.+.+. .+.+-++++.|+.+--..++..++..--.|
T Consensus 213 ~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~--~~~l~~~-g~l~~~~~~~H~~~l~~~~~~~la~~g~~v 289 (451)
T PRK08203 213 RELMRESAALARRLGVRLHTHLAETLDEEAFCLERFGMRP--VDYLEDL-GWLGPDVWLAHCVHLDDAEIARLARTGTGV 289 (451)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCH--HHHHHHc-CCCCCCeEEEEEeCCCHHHHHHHHhcCCeE
Confidence 4456677888999999999998643211000 00122 2222221 344567889998655445555555432222
Q ss_pred EecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 003194 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (840)
Q Consensus 289 yld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (840)
..-... +.....+ ...++++++.+ -++.+|||+.
T Consensus 290 ~~~P~~--~~~l~~~-~~~~~~~~~~G--v~v~lGtD~~ 323 (451)
T PRK08203 290 AHCPCS--NMRLASG-IAPVRELRAAG--VPVGLGVDGS 323 (451)
T ss_pred EECcHH--hhhhccC-CCCHHHHHHCC--CeEEEecCCC
Confidence 221110 0000001 11345555543 3788999964
No 105
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=43.73 E-value=1.4e+02 Score=35.10 Aligned_cols=108 Identities=17% Similarity=0.195 Sum_probs=56.2
Q ss_pred hhhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCc----CCcChhhhHHHHhhcCCCCcEEEEeCCCCchH---------HH
Q 003194 211 LIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFS---------KE 277 (840)
Q Consensus 211 l~d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~----~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~---------~e 277 (840)
+.+..+..+.+.|.++|+|+++|+.-++...+. .-..| ++.+.+. .+.+-++++.|+.+--. .+
T Consensus 218 ~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~--~~~~~~~-g~l~~r~~l~H~~~l~~~~~~~~~~~~~ 294 (488)
T PRK06151 218 CTVDLLRRTAAAARELGCPVRLHCAQGVLEVETVRRLHGTTP--LEWLADV-GLLGPRLLIPHATYISGSPRLNYSGGDD 294 (488)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEECCchHHHHHHHHHcCCCH--HHHHHHc-CCCCCCcEEEEEEEcCCccccccCCHHH
Confidence 445577888999999999999999655321100 00122 2222221 34466889999854322 45
Q ss_pred HHHHHHhCCEeEecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCC
Q 003194 278 ASYLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDA 326 (840)
Q Consensus 278 ~~~la~~~pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~ 326 (840)
...++.. ++++...-..+.....+ ...++++++.+ -++.+|||+
T Consensus 295 ~~~la~~--g~~v~~~P~~~~~~g~~-~~p~~~l~~~G--v~v~lGtD~ 338 (488)
T PRK06151 295 LALLAEH--GVSIVHCPLVSARHGSA-LNSFDRYREAG--INLALGTDT 338 (488)
T ss_pred HHHHHhc--CCEEEECchhhhhhccc-cccHHHHHHCC--CcEEEECCC
Confidence 5555543 33332211110000001 12345555543 368899996
No 106
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=43.43 E-value=2.9e+02 Score=31.87 Aligned_cols=107 Identities=21% Similarity=0.190 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCCCCCCC--c--CCcChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCEe
Q 003194 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLD--L--RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288 (840)
Q Consensus 213 d~~l~~l~e~~~e~glPvq~H~G~gd~~~~--~--~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~pNV 288 (840)
+..+..+++.+.++|+++++|.+.+..... . .-..| +..+.+. .+-+-++++.|+.+--..+...++..--++
T Consensus 201 ~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~--~~~l~~~-g~l~~r~~~~H~~~l~~~~~~~la~~g~~i 277 (443)
T PRK09045 201 DENLERIRTLAEQLDLPIHIHLHETAQEIADSLKQHGQRP--LARLARL-GLLGPRLIAVHMTQLTDAEIALLAETGCSV 277 (443)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecCcHHHHHHHHHHhCCCH--HHHHHHc-CCCCCCeEEEEecCCCHHHHHHHHHcCCeE
Confidence 345677788999999999999864311100 0 00112 2222222 234457788898654344455555432222
Q ss_pred EecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 003194 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (840)
Q Consensus 289 yld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (840)
-..... +.....+ ...++++++.+ =++.+|||+.
T Consensus 278 ~~~P~~--~~~~~~~-~~~~~~l~~~G--v~v~lGtD~~ 311 (443)
T PRK09045 278 VHCPES--NLKLASG-FCPVAKLLQAG--VNVALGTDGA 311 (443)
T ss_pred EECHHH--HhhhccC-CCcHHHHHHCC--CeEEEecCCC
Confidence 111110 0000001 11345555533 3678999964
No 107
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=42.03 E-value=33 Score=36.39 Aligned_cols=76 Identities=22% Similarity=0.320 Sum_probs=41.3
Q ss_pred cCCchhhhhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhH---HHHhhcCCCCcEEEEeCC--CCchHH---
Q 003194 205 RITNKSLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLR---AILEDKRFSKCRFVLLHA--SYPFSK--- 276 (840)
Q Consensus 205 ~~~~~~l~d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~---~l~~~~~~P~l~~VllH~--g~p~~~--- 276 (840)
.+....+.+ +|+++.+++.|+||.+=||... -.-++ .+++ +--+-+++++|| +||-..
T Consensus 94 KIaS~dl~n---~~lL~~~A~tgkPvIlSTG~st---------l~EI~~Av~~~~--~~~~~~l~llHC~s~YP~~~e~~ 159 (241)
T PF03102_consen 94 KIASGDLTN---LPLLEYIAKTGKPVILSTGMST---------LEEIERAVEVLR--EAGNEDLVLLHCVSSYPTPPEDV 159 (241)
T ss_dssp EE-GGGTT----HHHHHHHHTT-S-EEEE-TT-----------HHHHHHHHHHHH--HHCT--EEEEEE-SSSS--GGG-
T ss_pred EeccccccC---HHHHHHHHHhCCcEEEECCCCC---------HHHHHHHHHHHH--hcCCCCEEEEecCCCCCCChHHc
Confidence 344444443 5678888999999999999652 11122 2332 235789999999 677432
Q ss_pred ---HHHHHHHhCCEeEeccccc
Q 003194 277 ---EASYLAYVYPQVYLDFGLA 295 (840)
Q Consensus 277 ---e~~~la~~~pNVyld~s~~ 295 (840)
.+..|...|+ +-++.|--
T Consensus 160 NL~~i~~L~~~f~-~~vG~SDH 180 (241)
T PF03102_consen 160 NLRVIPTLKERFG-VPVGYSDH 180 (241)
T ss_dssp -TTHHHHHHHHST-SEEEEEE-
T ss_pred ChHHHHHHHHhcC-CCEEeCCC
Confidence 3456778898 66666653
No 108
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=41.91 E-value=1.4e+02 Score=33.42 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=17.3
Q ss_pred CCChhHHHHHHHHHHHHhHHHHhcCC
Q 003194 356 DLSVGEAIEVAKDIFALNAAQFYKIN 381 (840)
Q Consensus 356 ~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (840)
.++. +.+-+....|++++|+++
T Consensus 292 g~~~----~ea~~~~t~npa~~~gl~ 313 (365)
T TIGR03583 292 GYSL----EEVIEKVTKNAAEILKLT 313 (365)
T ss_pred CCCH----HHHHHHHHHHHHHHhCCC
Confidence 4776 456677889999999985
No 109
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=40.96 E-value=1.5e+02 Score=34.33 Aligned_cols=107 Identities=19% Similarity=0.131 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCc----CCcChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCE
Q 003194 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (840)
Q Consensus 212 ~d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~----~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~pN 287 (840)
.+..+..+.+.+.++|+++++|..-+....+. ....| +..+.+. -+-+-++++.|+.+--..+...++..--+
T Consensus 195 s~e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~g~~~--~~~l~~~-Gll~~~~~~~H~~~l~~~d~~~la~~g~~ 271 (435)
T PRK15493 195 STELLEECARIAVENQTMVHIHLSETEREVRDIEAQYGKRP--VEYAASC-GLFKRPTVIAHGVVLNDNERAFLAEHDVR 271 (435)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCH--HHHHHHc-CCCCCCcEEEEeecCCHHHHHHHHHcCCe
Confidence 34467888999999999999999754221100 01123 2222221 23456788899976545556666654333
Q ss_pred eEecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCC
Q 003194 288 VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDA 326 (840)
Q Consensus 288 Vyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~ 326 (840)
|-..+..-. ....| ...++.+++.+ -++.+|||+
T Consensus 272 v~~~P~sn~--~l~~g-~~p~~~~~~~G--v~v~lGtD~ 305 (435)
T PRK15493 272 VAHNPNSNL--KLGSG-IANVKAMLEAG--IKVGIATDS 305 (435)
T ss_pred EEEChHHHH--HHhcC-cccHHHHHHCC--CeEEEccCc
Confidence 332221100 00011 11344555543 478899996
No 110
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=40.77 E-value=1.9e+02 Score=30.69 Aligned_cols=98 Identities=18% Similarity=0.153 Sum_probs=52.5
Q ss_pred HHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCEeEeccccc
Q 003194 216 FISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLA 295 (840)
Q Consensus 216 l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~pNVyld~s~~ 295 (840)
+..+++.++++|+|+++|++-..... ....++.+.+ ..|++ +.|+.+--..+...++..--.|-..+...
T Consensus 127 l~~~~~~A~~~g~~v~~H~~e~~~~~-----g~~~i~~~~~--~~~~~---i~H~~~l~~~~~~~la~~g~~v~~~P~sn 196 (263)
T cd01305 127 LEDILELLRRRGKLFAIHASETRESV-----GMTDIERALD--LEPDL---LVHGTHLTDEDLELVRENGVPVVLCPRSN 196 (263)
T ss_pred HHHHHHHHHHCCCeeEEecCCCCCCC-----CchhHHHHHh--CCCCE---EEEcCCCCHHHHHHHHHcCCcEEEChhhH
Confidence 78889999999999999997442111 1112445555 33443 47986544455555554322222222110
Q ss_pred CCCCcHHHHHHHHHHHHHHCCCCcEEEecCCCC
Q 003194 296 IPKLSVQGMISSIKELLELAPTKKVMFSTDAYA 328 (840)
Q Consensus 296 ~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (840)
+ ....|. ..++++++.+ -++.+|||+..
T Consensus 197 ~--~l~~g~-~p~~~l~~~G--v~v~lGtD~~~ 224 (263)
T cd01305 197 L--YFGVGI-PPVAELLKLG--IKVLLGTDNVM 224 (263)
T ss_pred H--HhCCCC-CCHHHHHHCC--CcEEEECCCCc
Confidence 0 000011 1345555544 58889999643
No 111
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=40.57 E-value=5.8e+02 Score=28.72 Aligned_cols=140 Identities=14% Similarity=0.024 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCCCch-----H-----HHHHHHH
Q 003194 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF-----S-----KEASYLA 282 (840)
Q Consensus 213 d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~-----~-----~e~~~la 282 (840)
+..+....+.++++|+|+.+|++-+.. ....+.++++ ++ .++.|+.+.. . .+....+
T Consensus 172 ~~~l~~~~~~A~~~g~~v~iH~~e~~~-------~~~~~~~~l~----~g--~~~~H~~~~~~~~~~~~~~~~~~~~~~~ 238 (379)
T PRK12394 172 LKPLTETLRIANDLRCPVAVHSTHPVL-------PMKELVSLLR----RG--DIIAHAFHGKGSTILTEEGAVLAEVRQA 238 (379)
T ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCc-------cHHHHHHhcC----CC--CEEEecCCCCCCCcCCCCCCChHHHHHH
Confidence 345667788899999999999974321 0111222222 23 2567873311 1 1122222
Q ss_pred HhCCEeEecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCCCCcccchhhHHHHHHHHHHHHhhhhcCCCCChhHH
Q 003194 283 YVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEA 362 (840)
Q Consensus 283 ~~~pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~R~~l~~~l~~~v~~g~l~~~ea 362 (840)
...++++|...-- +...+ ..+..+++.+ .-..++|||........+. ...... ++.+.+. ..++..
T Consensus 239 -~~~G~~~~~~~g~---s~~~~-~~~~~~l~~G-~~~~~lgTD~~~~~~~~~~-~~~l~~----~~~~~~~-~~~~~~-- 304 (379)
T PRK12394 239 -RERGVIFDAANGR---SHFDM-NVARRAIANG-FLPDIISSDLSTITKLAWP-VYSLPW----VLSKYLA-LGMALE-- 304 (379)
T ss_pred -HhCCeEEEecCCc---cccch-HHHHHHHHCC-CCceEEECCCCCCCcccCc-cchHHH----HHHHHHH-cCCCHH--
Confidence 2345777654311 11111 2334555433 2245789997553321111 111222 3333333 347764
Q ss_pred HHHHHHHHHHhHHHHhcCC
Q 003194 363 IEVAKDIFALNAAQFYKIN 381 (840)
Q Consensus 363 ~~~~~~Il~~NA~rly~l~ 381 (840)
.+=+..-.|+++++++.
T Consensus 305 --~~~~~at~~~a~~~g~~ 321 (379)
T PRK12394 305 --DVINACTHTPAVLMGMA 321 (379)
T ss_pred --HHHHHHHHHHHHHhCCC
Confidence 34455668888999985
No 112
>KOG4127 consensus Renal dipeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=39.93 E-value=1.5e+02 Score=33.10 Aligned_cols=135 Identities=15% Similarity=0.129 Sum_probs=70.0
Q ss_pred HHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCCCchH---------HHHHHHHHh-CCEeEe
Q 003194 221 EVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFS---------KEASYLAYV-YPQVYL 290 (840)
Q Consensus 221 e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~---------~e~~~la~~-~pNVyl 290 (840)
....++|+-| |+....+..+.++++ --+.++|+.|.+ ++. ++...+... =.=|.+
T Consensus 239 ~EMNRLGMmV-----------DLShvS~atm~~aL~---vS~APVIFSHSs-A~~vcns~rNVPDdVL~llk~NgGvVMV 303 (419)
T KOG4127|consen 239 FEMNRLGMMV-----------DLSHVSDATMRDALE---VSRAPVIFSHSS-AYSVCNSSRNVPDDVLQLLKENGGVVMV 303 (419)
T ss_pred HHHhhhhhee-----------ehhhcCHHHHHHHHH---hhcCceEeeccc-HHHHhcCccCCcHHHHHHHhhcCCEEEE
Confidence 3345677666 333444445555665 356889999983 111 122333222 222333
Q ss_pred cccccC----CCCcHHHHHHHHHHHHHHCCCCcEEEecCCCC---CcccchhhHHHHHHHHHHHHhhhhcCCCCChhHHH
Q 003194 291 DFGLAI----PKLSVQGMISSIKELLELAPTKKVMFSTDAYA---SPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAI 363 (840)
Q Consensus 291 d~s~~~----~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~---~Pe~~~~~~~~~R~~l~~~l~~~v~~g~l~~~ea~ 363 (840)
.+.--| ...........+..+.+.+|.+.|-+|.|--. +|...-.-++ +-.. +.+..+++.+. +
T Consensus 304 nfy~~~isc~~~A~v~~v~~Hi~hIr~VaG~~hIGlGg~yDGi~~~PkGLEDVSk-YP~L----iaeLl~r~~~~-~--- 374 (419)
T KOG4127|consen 304 NFYPGFISCSDRATVSDVADHINHIRAVAGIDHIGLGGDYDGIPRVPKGLEDVSK-YPDL----IAELLERGWWE-E--- 374 (419)
T ss_pred EeecccccCCCcccHHHHHHHHHHHHHhhccceeeccCCcCCcCCCCcchhhhhh-hHHH----HHHHHhcCCcH-H---
Confidence 332211 11112344567888888999999999998322 2221000011 2223 34444445443 2
Q ss_pred HHHHHHHHHhHHHHhcC
Q 003194 364 EVAKDIFALNAAQFYKI 380 (840)
Q Consensus 364 ~~~~~Il~~NA~rly~l 380 (840)
+..+++++|..|+|+-
T Consensus 375 -E~~~l~g~N~LRV~~~ 390 (419)
T KOG4127|consen 375 -ELIGLAGGNLLRVFRQ 390 (419)
T ss_pred -HHHHHhcchHHHHHHH
Confidence 3334999999999974
No 113
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=39.18 E-value=2.6e+02 Score=31.43 Aligned_cols=109 Identities=23% Similarity=0.231 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCCCCCC----cCCcChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCE
Q 003194 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLD----LRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (840)
Q Consensus 212 ~d~~l~~l~e~~~e~glPvq~H~G~gd~~~~----~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~pN 287 (840)
.+..+..+++.|.++|+++.+|.+-...... .....+ ++.+.+. ...+.++.+.|+.+--..+...++.. +
T Consensus 192 ~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~i~H~~~l~~~~~~~l~~~--g 266 (411)
T cd01298 192 SDELLREVAELAREYGVPLHIHLAETEDEVEESLEKYGKRP--VEYLEEL-GLLGPDVVLAHCVWLTDEEIELLAET--G 266 (411)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCCH--HHHHHHc-CCCCCCeEEEEecCCCHHHHHHHHHc--C
Confidence 3446777889999999999999853211000 000112 2222221 34467888999865433333344332 3
Q ss_pred eEecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCCC
Q 003194 288 VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYA 328 (840)
Q Consensus 288 Vyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (840)
+.+-+.-..+.....+ ...++.+++.+ -++.+|||+..
T Consensus 267 i~~~~~p~~~~~~~~~-~~~~~~~~~~G--v~~~~GsD~~~ 304 (411)
T cd01298 267 TGVAHNPASNMKLASG-IAPVPEMLEAG--VNVGLGTDGAA 304 (411)
T ss_pred CeEEEChHHhhhhhhC-CCCHHHHHHCC--CcEEEeCCCCc
Confidence 3332221111000001 12355666543 25789999653
No 114
>PRK09237 dihydroorotase; Provisional
Probab=38.73 E-value=5.7e+02 Score=28.68 Aligned_cols=130 Identities=19% Similarity=0.173 Sum_probs=61.3
Q ss_pred HHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCC--Cc---hH------HHHHHHHHhCCEeE
Q 003194 221 EVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHAS--YP---FS------KEASYLAYVYPQVY 289 (840)
Q Consensus 221 e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g--~p---~~------~e~~~la~~~pNVy 289 (840)
+++++.|+|+.+|++-.. .....+..+++ ++ .++.|+- .+ .. .++.... -.++|
T Consensus 175 ~~a~~~g~~v~~H~~~~~-------~~~~~l~~~l~----~g--~~~~H~~~~~~~~~~~~~~~~~~~a~~~l--~~G~~ 239 (380)
T PRK09237 175 AIAAEANLPLMVHIGNPP-------PSLEEILELLR----PG--DILTHCFNGKPNRILDEDGELRPSVLEAL--ERGVR 239 (380)
T ss_pred HHHHhcCCCEEEEcCCCC-------CCHHHHHhhcc----CC--CEEEecCCCCCCCccCCCCcchHHHHHHH--HCCEE
Confidence 334589999999997431 11223333444 22 2568882 22 00 1111112 24889
Q ss_pred ecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCCCCcccchhhH-HHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 003194 290 LDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGA-KRAREVVFSVLRDTCIDEDLSVGEAIEVAKD 368 (840)
Q Consensus 290 ld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~-~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~ 368 (840)
++++.-....+ .. ....+++. +.....++||.+ |...+... ....+.+ ...++. .++. +.+-+
T Consensus 240 ~~ig~g~~~~~---~~-~~~~l~~~-g~~~~~l~tD~~--~~~~~~~~~~~l~~~~----~~~~~~-g~~~----~~al~ 303 (380)
T PRK09237 240 LDVGHGTASFS---FK-VAEAAIAA-GILPDTISTDIY--CRNRINGPVYSLATVM----SKFLAL-GMPL----EEVIA 303 (380)
T ss_pred EEecCCCCccc---HH-HHHHHHHC-CCCceEEECCCC--CCCcccchHhHHHHHH----HHHHHh-CCCH----HHHHH
Confidence 88752110011 11 22333433 222226899953 32101011 1122333 232322 4665 45677
Q ss_pred HHHHhHHHHhcCC
Q 003194 369 IFALNAAQFYKIN 381 (840)
Q Consensus 369 Il~~NA~rly~l~ 381 (840)
+...|++++|+++
T Consensus 304 ~aT~n~A~~lgl~ 316 (380)
T PRK09237 304 AVTKNAADALRLP 316 (380)
T ss_pred HHHHHHHHHcCCC
Confidence 7789999999984
No 115
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=38.57 E-value=2.3e+02 Score=31.97 Aligned_cols=114 Identities=18% Similarity=0.130 Sum_probs=58.3
Q ss_pred CCCCcEEEEeCCCCchHHHHHHHHHhCCEeEecccccCCCCcH------------------HHHHHHHHHHHHHCCCCcE
Q 003194 259 RFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLAIPKLSV------------------QGMISSIKELLELAPTKKV 320 (840)
Q Consensus 259 ~~P~l~~VllH~g~p~~~e~~~la~~~pNVyld~s~~~~~~~~------------------~g~~~~l~~~le~~~~~ki 320 (840)
+..+.++.+.|.+.+-..++..-++ .+|+.+++...-.... ..-+..|.+.++.+-. .
T Consensus 168 ~~~~~~~hi~Hvs~~~~~~~i~~~k--~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~G~i--d 243 (361)
T cd01318 168 RRHGARLHICHVSTPEELKLIKKAK--PGVTVEVTPHHLFLDVEDYDRLGTLGKVNPPLRSREDRKALLQALADGRI--D 243 (361)
T ss_pred HHHCCCEEEEeCCCHHHHHHHHHhC--CCeEEEeCHHHhhcCHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhCCCC--C
Confidence 3578999999997765444443332 4677777653211100 1112344444443322 2
Q ss_pred EEecCCCCCccc-----ch---hhHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhcCC
Q 003194 321 MFSTDAYASPET-----YF---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (840)
Q Consensus 321 lfgSD~~~~Pe~-----~~---~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (840)
+++||.-++... +| .+.. ..+.+-.++-.++.++.++.. .+-+.+..|.+++|+++
T Consensus 244 ~i~SDh~P~~~~~k~~~~~~a~~G~~-g~e~~l~~~~~~v~~~~l~l~----~a~~~~t~nPA~~lgl~ 307 (361)
T cd01318 244 VIASDHAPHTLEEKRKGYPAAPSGIP-GVETALPLMLTLVNKGILSLS----RVVRLTSHNPARIFGIK 307 (361)
T ss_pred EEeeCCCCCCHHHccCChhhCCCCCc-cHHHHHHHHHHHHHcCCCCHH----HHHHHHhHHHHHHhCCC
Confidence 699995333210 00 0100 011111223345666788874 45556678888999985
No 116
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=36.54 E-value=4.8e+02 Score=28.75 Aligned_cols=171 Identities=18% Similarity=0.168 Sum_probs=88.0
Q ss_pred HHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCC--CCchH---H--HH---HHHHHhCCEe
Q 003194 219 SLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA--SYPFS---K--EA---SYLAYVYPQV 288 (840)
Q Consensus 219 l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~--g~p~~---~--e~---~~la~~~pNV 288 (840)
..+++..+++|+.+|+|-. |...+++++ ++..-.| +.|| |.|.. . +. ...| .-..|
T Consensus 177 a~~ia~~~klPlmvHigeP----------p~~~dEvle--rL~~GDI-itHcfngkpn~~l~~dg~vr~~vrra-~erGV 242 (386)
T COG3964 177 ALRIANDLKLPLMVHIGEP----------PVLMDEVLE--RLRRGDI-ITHCFNGKPNTILTDDGVVRAEVRRA-RERGV 242 (386)
T ss_pred HHHHHhhcCCceEEecCCC----------CccHHHHHH--hccCCce-eeeeccCCCCCccccchhHHHHHHHH-Hhcce
Confidence 3577789999999999853 345677887 5544444 3676 33321 1 11 1122 22478
Q ss_pred EecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCCCCcccchhhHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 003194 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKD 368 (840)
Q Consensus 289 yld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~ 368 (840)
-+|.+---...+ -..-+.++..+. =-...+||-+.+-...|+... .--.+.++|.- .+|+. ++.+.
T Consensus 243 ~fD~ghG~asfs----f~vAr~aia~Gl-lP~~ISSDlh~~~~~n~Pv~d-la~~mSKllal-----gmpl~---~Vi~a 308 (386)
T COG3964 243 IFDAGHGRASFS----FNVARRAIANGL-LPDIISSDLHTITKLNGPVYD-LAWIMSKLLAL-----GMPLT---DVINA 308 (386)
T ss_pred EEEccCCcceee----HHHHHHHHhcCC-CcceeeccceeeeecCchHHH-HHHHHHHHHHc-----CCcHH---HHHHH
Confidence 899875322222 123444444333 334468996554433343322 22234444432 46664 35544
Q ss_pred HHHHhHHHHhcCCCCccccCCcchhhHhhhhhhhhccCCccEEEEEEecCCC-CcceEEE
Q 003194 369 IFALNAAQFYKINLGVKDFASKDDMHQIYLKKSDAFESDVSLIRVIWVDASG-QHRCRVV 427 (840)
Q Consensus 369 Il~~NA~rly~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~l~~~D~~G-~~R~k~v 427 (840)
+-.|++++.+++.. ..++.. ....+..|..++.. +.|+|..| .++.+.+
T Consensus 309 -vT~npA~~i~l~~~-gtLa~G---~~aD~tvf~lk~~~-----~e~vDa~gdsl~a~~l 358 (386)
T COG3964 309 -VTHNPAVLIGLAEI-GTLAPG---AFADITVFKLKNRH-----VEFVDAHGDSLTATHL 358 (386)
T ss_pred -HhcCHHHHhCcccc-CccCCC---cccceEEEEeccCc-----eEEEeccCchhehhee
Confidence 45799999998622 111111 00002223334433 67889988 4665543
No 117
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=36.05 E-value=76 Score=30.34 Aligned_cols=19 Identities=21% Similarity=0.358 Sum_probs=13.4
Q ss_pred ccceeeecccCCCCCCCCC
Q 003194 167 VGLKSIAAYRSGLEINPHV 185 (840)
Q Consensus 167 vgfks~~~y~~Gl~~~p~~ 185 (840)
.|||+|++.|.--+....+
T Consensus 26 ~GiktVIdlR~~~E~~~~p 44 (135)
T TIGR01244 26 LGFKTVINNRPDREEESQP 44 (135)
T ss_pred CCCcEEEECCCCCCCCCCC
Confidence 4799999998766544333
No 118
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=36.01 E-value=5.5e+02 Score=29.60 Aligned_cols=112 Identities=15% Similarity=0.134 Sum_probs=64.9
Q ss_pred HHHHHHHHHhhCCCc-EEEeeCCCCCCCC--cCCcCh-hhhHHHHhhcCCCCcEEEEeCCCC-c-----hHHHHHHHHHh
Q 003194 215 IFISSLEVAQFLDLP-LQIHTGFGDKDLD--LRLSNP-LHLRAILEDKRFSKCRFVLLHASY-P-----FSKEASYLAYV 284 (840)
Q Consensus 215 ~l~~l~e~~~e~glP-vq~H~G~gd~~~~--~~~~~P-~~L~~l~~~~~~P~l~~VllH~g~-p-----~~~e~~~la~~ 284 (840)
.|..-++.|+++|.+ |.+|+|....... -.+..- ..|..++. +-.++++++=+++. . ...++..+...
T Consensus 219 ~~~~eL~rA~~LGa~~VV~HPGs~~~~~~~ee~i~~i~e~L~~~la--~~~gV~IlLENmag~g~~lG~~~eeL~~Iid~ 296 (413)
T PTZ00372 219 AFLDDLQRCEQLGIKLYNFHPGSTVGQCSKEEGIKNIADCINKAHE--ETKSVIIVLENTAGQKNSVGSKFEDLRDIIAL 296 (413)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCCCCCCHHHHHHHHHHHHHHHHh--CcCCCEEEEecCCCCCCcccCCHHHHHHHHHh
Confidence 345567889999998 8999998421100 000000 13455555 34568888876522 1 23445555543
Q ss_pred C---C--EeEecccccCC---CC-cHHHHHHHHHHHHHHCCCCcE--EEecCCCC
Q 003194 285 Y---P--QVYLDFGLAIP---KL-SVQGMISSIKELLELAPTKKV--MFSTDAYA 328 (840)
Q Consensus 285 ~---p--NVyld~s~~~~---~~-~~~g~~~~l~~~le~~~~~ki--lfgSD~~~ 328 (840)
. + .|-+|++..+. +. ++++....+.++-+..|.++| |=..|+..
T Consensus 297 v~~~~rlGvCLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLNDSk~ 351 (413)
T PTZ00372 297 VEDKSRVGVCLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLNDSKS 351 (413)
T ss_pred cCCcCCeEEEEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEEcCCC
Confidence 3 3 36788887652 11 234666677776677787876 57888643
No 119
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=35.32 E-value=62 Score=26.93 Aligned_cols=50 Identities=20% Similarity=0.343 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCCceeeeccCCCCCceEEecCcchHHHHHhHHHHHHHHHHHHHHHcCC
Q 003194 569 QEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGL 626 (840)
Q Consensus 569 ~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~Gl 626 (840)
+++.+.|..+|+.++. . ...+++++..++-.. ++...-.++-+||+-+|+
T Consensus 22 ~ei~~~L~~lg~~~~~--~-~~~~~~~v~~P~~R~-----Di~~~~DliEei~r~~Gy 71 (71)
T smart00874 22 EEIEEILKRLGFEVEV--S-GDDDTLEVTVPSYRF-----DILIEADLIEEVARIYGY 71 (71)
T ss_pred HHHHHHHHHCCCeEEe--c-CCCCeEEEECCCCcc-----ccCcccHHHHHHHHHhCC
Confidence 5789999999999964 1 114678888877532 344444578899998886
No 120
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=34.14 E-value=1.1e+02 Score=26.09 Aligned_cols=63 Identities=11% Similarity=0.097 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhCCCceeeeccCCCCCceEEecCcchHHHHHhHHHHHHHHHHHHHHHcCCeeEec
Q 003194 566 PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFV 631 (840)
Q Consensus 566 ~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~Gl~ATFm 631 (840)
-++..+.+.|.+.|.+|.....=.-.|+|-+.+....+ .+..-.++..++.+|+++|+.++.+
T Consensus 13 GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~---~~~~~~l~~~l~~~~~~~~l~i~v~ 75 (77)
T cd04893 13 GILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS---WDAIAKLEAALPGLARRLDLTLMMK 75 (77)
T ss_pred hHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec---cccHHHHHHHHHHHHHHcCCEEEEE
Confidence 47888999999999999988888788888766665533 2456778888999999999988753
No 121
>PRK06361 hypothetical protein; Provisional
Probab=33.64 E-value=2.4e+02 Score=28.86 Aligned_cols=96 Identities=16% Similarity=0.136 Sum_probs=53.1
Q ss_pred EEEeCCCCchHHHHHHHHHhCCEeEecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCCCCcccchhhHHHHHHHH
Q 003194 265 FVLLHASYPFSKEASYLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVV 344 (840)
Q Consensus 265 ~VllH~g~p~~~e~~~la~~~pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~R~~l 344 (840)
-|++|+++.. .+....+ .-.++|+++...-.. .......++.+ ...+. +++.+||++ -|+... .++
T Consensus 115 dvlaHpd~~~-~~~~~~~-~~~~~~lEin~~~~~--~~~~~~~l~~a-~~~gi-~vv~~SDaH-~~~d~~----~~~--- 180 (212)
T PRK06361 115 DILAHPGLIT-EEEAELA-AENGVFLEITARKGH--SLTNGHVARIA-REAGA-PLVINTDTH-APSDLI----TYE--- 180 (212)
T ss_pred cEecCcchhh-HHHHHHH-HHcCeEEEEECCCCc--ccchHHHHHHH-HHhCC-cEEEECCCC-CHHHHH----HHH---
Confidence 6789997643 3444433 234788887642111 11112234433 34453 489999988 454221 121
Q ss_pred HHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhcC
Q 003194 345 FSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKI 380 (840)
Q Consensus 345 ~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l 380 (840)
.+....++..++. +.+..++-.|.+++++.
T Consensus 181 --~~~~i~~~~gl~~----~~v~~~~~~~~~~~~~~ 210 (212)
T PRK06361 181 --FARKVALGAGLTE----KELEEALENNPKLLLKR 210 (212)
T ss_pred --HHHHHHcCCCCCH----HHHHHHHHHhHHHHHHh
Confidence 1222334445664 67889999999999863
No 122
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=33.57 E-value=26 Score=31.61 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=20.9
Q ss_pred HHHHhCCCceeeeccCCCCCceEEecCc
Q 003194 573 ADLHSLNISVEQLHAEAGKGQFEIALGH 600 (840)
Q Consensus 573 ~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~ 600 (840)
+.--++|-+||++.-+ +||||||||.-
T Consensus 52 de~~a~ge~ietIrI~-~pG~YeiNl~~ 78 (112)
T COG3364 52 DEDGAQGEPIETIRIL-RPGVYEINLES 78 (112)
T ss_pred chhhcccCcceEEEEe-cCceEEEehhh
Confidence 4445677788888866 89999999853
No 123
>PTZ00124 adenosine deaminase; Provisional
Probab=32.83 E-value=1.7e+02 Score=33.18 Aligned_cols=84 Identities=12% Similarity=0.139 Sum_probs=48.7
Q ss_pred cHHHHHHHHHHHHHhhcc---ccccceeeecccCCCCCCCCCCHHHHHHHHHHHHhCC---CCCcCCchhhhhHHHHHHH
Q 003194 147 TLDVFIETFLKQLRSAAN---KIVGLKSIAAYRSGLEINPHVTKKDAEEGLAEDLRSG---KPVRITNKSLIDYIFISSL 220 (840)
Q Consensus 147 ~~~~~~~al~~~l~~~~~---~~vgfks~~~y~~Gl~~~p~~~~~ea~~~~~r~l~~~---~~~~~~~~~l~d~~l~~l~ 220 (840)
+++++++++.+.++.+.. .-+..+-|.|..... +++.+.+.++-+++-. .+..+.+.+.....+.+++
T Consensus 139 ~~~~vv~av~~g~~~a~~~~~~gI~~~lI~~~~R~~------~~e~a~e~~~~a~~~~~~vvGiDLaG~E~~~~~f~~~f 212 (362)
T PTZ00124 139 DIDLIHQAIVKGIKEAVELLDHKIEVGLLCIGDTGH------DAAPIKESADFCLKHKADFVGFDHAGHEVDLKPFKDIF 212 (362)
T ss_pred CHHHHHHHHHHHHHHHHhccCCCceEeEEEEecCCC------CHHHHHHHHHHHHhccCCeEEEeccCCCCCcHHHHHHH
Confidence 467777777777665422 223355566653332 3455555555554421 1122222222224578999
Q ss_pred HHHhhCCCcEEEeeCC
Q 003194 221 EVAQFLDLPLQIHTGF 236 (840)
Q Consensus 221 e~~~e~glPvq~H~G~ 236 (840)
+.|.+.|+++.+|.|-
T Consensus 213 ~~Ar~~Gl~~t~HaGE 228 (362)
T PTZ00124 213 DYVREAGVNLTVHAGE 228 (362)
T ss_pred HHHHHCCCCEEEEeCC
Confidence 9999999999999995
No 124
>PRK06687 chlorohydrolase; Validated
Probab=32.34 E-value=4.9e+02 Score=29.69 Aligned_cols=107 Identities=21% Similarity=0.176 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCc----CCcChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCE
Q 003194 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (840)
Q Consensus 212 ~d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~----~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~pN 287 (840)
.+..+..+++.|.++|+++++|.+-....... ....|. ..+.+. .+-+-++++.|+.+.-..+...++..--+
T Consensus 194 s~e~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~~~~~g~~~~--~~l~~~-g~l~~~~~~~H~~~~~~~~~~~la~~g~~ 270 (419)
T PRK06687 194 SRDLLEASLEMAKELNIPLHVHVAETKEESGIILKRYGKRPL--AFLEEL-GYLDHPSVFAHGVELNEREIERLASSQVA 270 (419)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHCcCHH--HHHHHc-CCCCCCeEEEEEecCCHHHHHHHHHcCCe
Confidence 34457778899999999999999753211000 011221 112221 23345778899976555566666653222
Q ss_pred eEecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCC
Q 003194 288 VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDA 326 (840)
Q Consensus 288 Vyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~ 326 (840)
|-..+.. +.....|+ .-++++++.+ -++-+|||+
T Consensus 271 v~~~P~s--n~~l~~g~-~p~~~~~~~G--v~v~lGtD~ 304 (419)
T PRK06687 271 IAHNPIS--NLKLASGI-APIIQLQKAG--VAVGIATDS 304 (419)
T ss_pred EEECcHH--hhhhccCC-CcHHHHHHCC--CeEEEeCCC
Confidence 2221110 00000011 1244555533 367899996
No 125
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=32.11 E-value=3.7e+02 Score=30.84 Aligned_cols=108 Identities=18% Similarity=0.158 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCc----CCcChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCE
Q 003194 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (840)
Q Consensus 212 ~d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~----~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~pN 287 (840)
.+..+..+++.+.++|+|+++|.+-+...... ....|. .++.+-.+-+-++++.|+.+--..++..++.. +
T Consensus 187 s~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~---~~l~~~G~l~~~~~~~H~~~l~~~~l~~la~~--g 261 (424)
T PRK08393 187 SLALLKWVREKAREWNKLITIHLSETMDEIKQIREKYGKSPV---VLLDEIGFLNEDVIAAHGVWLSSRDIRILASA--G 261 (424)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCcCHH---HHHHHcCCCCCCcEEEEeecCCHHHHHHHHhc--C
Confidence 34567788899999999999999754211000 011232 12221122345778889854333444555532 2
Q ss_pred eEecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 003194 288 VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (840)
Q Consensus 288 Vyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (840)
+++...-..+.....|. ..++++++.+ -++.+|||+.
T Consensus 262 ~~v~~~P~sn~~lg~g~-~~~~~~~~~G--v~v~lGtD~~ 298 (424)
T PRK08393 262 VTVAHNPASNMKLGSGV-MPLRKLLNAG--VNVALGTDGA 298 (424)
T ss_pred CEEEECHHHHHhhccCC-CCHHHHHHCC--CcEEEecCCC
Confidence 33322211000000011 1244555543 5888999964
No 126
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=31.29 E-value=3.4e+02 Score=30.81 Aligned_cols=107 Identities=21% Similarity=0.174 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhCCCcEEEeeCCCCCCCCc----------------------CCcChhhhHHHHhhcCCCCcEEEEeCCC
Q 003194 214 YIFISSLEVAQFLDLPLQIHTGFGDKDLDL----------------------RLSNPLHLRAILEDKRFSKCRFVLLHAS 271 (840)
Q Consensus 214 ~~l~~l~e~~~e~glPvq~H~G~gd~~~~~----------------------~~~~P~~L~~l~~~~~~P~l~~VllH~g 271 (840)
..+..+.+.|+++|+|+++|..-+..+... ....|. +.+.+. .+-+-++++.|+.
T Consensus 163 e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~g~~pv--~~l~~~-g~L~~~~~~~H~~ 239 (381)
T cd01312 163 ELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLATAI--DFLDML-GGLGTRVSFVHCV 239 (381)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccchhhHhhhhcccccccCCCCHH--HHHHHc-CCCCCCcEEEECC
Confidence 356777889999999999998753211100 012232 222221 2334578889997
Q ss_pred CchHHHHHHHHHhCCEeEecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCCC
Q 003194 272 YPFSKEASYLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYA 328 (840)
Q Consensus 272 ~p~~~e~~~la~~~pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (840)
+--..++..++..--.|-..+. .+.....| ...++++++.+ -++.+|||+..
T Consensus 240 ~l~~~~~~~l~~~g~~v~~~P~--sn~~lg~g-~~p~~~~~~~G--v~v~lGtD~~~ 291 (381)
T cd01312 240 YANLEEAEILASRGASIALCPR--SNRLLNGG-KLDVSELKKAG--IPVSLGTDGLS 291 (381)
T ss_pred cCCHHHHHHHHHcCCeEEECcc--hhhhhcCC-CcCHHHHHHCC--CcEEEeCCCCc
Confidence 6555566666654322222111 00000001 11345555543 47889999643
No 127
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=29.04 E-value=2.2e+02 Score=32.61 Aligned_cols=124 Identities=24% Similarity=0.220 Sum_probs=66.6
Q ss_pred HHHHHHHHHhCCC----CCcCCchhhhhHHHHHHHHHHhhCCCcEEEeeCCCCCCCC---c-CCcChhhhHHHHhhcCCC
Q 003194 190 AEEGLAEDLRSGK----PVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLD---L-RLSNPLHLRAILEDKRFS 261 (840)
Q Consensus 190 a~~~~~r~l~~~~----~~~~~~~~l~d~~l~~l~e~~~e~glPvq~H~G~gd~~~~---~-~~~~P~~L~~l~~~~~~P 261 (840)
+++.++++...+. ..+-.........+..+.+++.++|+|+++|..-...... . ....|. +.+...+..-
T Consensus 170 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~~~g~~~~--~~~~~~g~l~ 247 (421)
T COG0402 170 TEELLREAHGLGRDVVGLAPHFPYTVSPELLESLDELARKYGLPVHIHLAETLDEVERVLEPYGARPV--ERLDLLGLLG 247 (421)
T ss_pred HHHHHHHHhcCCCeeEEEecCCCCCCCHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHhhcCCCHH--HHHHHcCCCC
Confidence 5666666665431 1111112233345666777888999999999986532111 1 112232 2222222232
Q ss_pred CcEEEEeCCCCchHHHHHHHHHh------CC--EeEecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCCCC
Q 003194 262 KCRFVLLHASYPFSKEASYLAYV------YP--QVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYAS 329 (840)
Q Consensus 262 ~l~~VllH~g~p~~~e~~~la~~------~p--NVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~ 329 (840)
-+.+++|+-+....+...++.. +| |.++..+ .+| +...++.+ =++..|||+...
T Consensus 248 -~~~~~~H~~~~~~~e~~~l~~~g~~v~~cP~sN~~L~sG-~~p----------~~~~~~~g--v~v~~gTD~~~~ 309 (421)
T COG0402 248 -SHTLLAHCVHLSEEELELLAESGASVVHCPRSNLKLGSG-IAP----------VRRLLERG--VNVALGTDGAAS 309 (421)
T ss_pred -CCeEEEEeccCCHHHHHHHhhCCCeEEECcchhccccCC-CCC----------HHHHHHcC--CCEEEecCCccc
Confidence 5688999965555565555522 22 6666665 332 23333433 678899997554
No 128
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=28.56 E-value=3.7e+02 Score=30.88 Aligned_cols=108 Identities=14% Similarity=0.061 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCc----CCcChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCE
Q 003194 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (840)
Q Consensus 212 ~d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~----~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~pN 287 (840)
.+..+..+++.|.++|+|+++|..-....... .-..| ++.+.+ -.+-+-++++.|+.+--..+...++..--.
T Consensus 188 s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~G~~~--i~~l~~-~g~l~~r~~~~H~~~l~~~~~~~la~~g~~ 264 (430)
T PRK06038 188 SEEFLSKVKKLANKDGVGIHIHVLETEAELNQMKEQYGMCS--VNYLDD-IGFLGPDVLAAHCVWLSDGDIEILRERGVN 264 (430)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHhCCCH--HHHHHH-cCCCCCCeEEEEEecCCHHHHHHHHhcCCE
Confidence 34567888899999999999999754211000 00122 111222 123466888899865555555555543222
Q ss_pred eEecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 003194 288 VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (840)
Q Consensus 288 Vyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (840)
|-..+.. +.....|. ..++++++.+ =++-+|||+.
T Consensus 265 v~~~P~~--n~~~~~~~-~p~~~~~~~G--v~v~lGtD~~ 299 (430)
T PRK06038 265 VSHNPVS--NMKLASGI-APVPKLLERG--VNVSLGTDGC 299 (430)
T ss_pred EEEChHH--hhhhccCC-CCHHHHHHCC--CeEEEeCCCC
Confidence 2211110 00000011 1345555543 3688999953
No 129
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=27.91 E-value=8.5e+02 Score=27.93 Aligned_cols=107 Identities=13% Similarity=0.149 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCCCCCCCc----CCcChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCEe
Q 003194 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288 (840)
Q Consensus 213 d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~----~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~pNV 288 (840)
+..+..+.+.+.++|+|+++|..-.....+. .-..| +..+.+. ...+-++++.|+.+--..++..++.. ++
T Consensus 198 ~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~g~~~--~~~l~~~-g~~~~~~~l~H~~~~~~~~~~~~~~~--g~ 272 (445)
T PRK07228 198 EELLRGVRDLADEYGVRIHTHASENRGEIETVEEETGMRN--IHYLDEV-GLTGEDLILAHCVWLDEEEREILAET--GT 272 (445)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCH--HHHHHHC-CCCCCCcEEEEEecCCHHHHHHHHHc--CC
Confidence 4456777889999999999999532111100 00112 2222221 23345788999965433444444433 23
Q ss_pred EecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 003194 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (840)
Q Consensus 289 yld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (840)
.+-..-..+.....++ ..++++++.+ -++.+|||+.
T Consensus 273 ~v~~~P~~~~~~~~~~-~p~~~~~~~G--v~v~lGtD~~ 308 (445)
T PRK07228 273 HVTHCPSSNLKLASGI-APVPDLLERG--INVALGADGA 308 (445)
T ss_pred eEEEChHHhhhccccc-CcHHHHHHCC--CeEEEcCCCC
Confidence 2211100000000111 2345555543 4677999964
No 130
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=27.47 E-value=2.1e+02 Score=33.06 Aligned_cols=107 Identities=15% Similarity=0.097 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCCCCCCCc---C-CcChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCEe
Q 003194 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDL---R-LSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288 (840)
Q Consensus 213 d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~---~-~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~pNV 288 (840)
+..+..+.++++++|+||++|.+-+...... . -..| ++.+.+. .+=+-++++.|+.+.-..+...|+..--+|
T Consensus 204 ~~~l~~~~~lA~~~g~~i~~H~~E~~~e~~~~~~~~g~~~--v~~l~~~-Gll~~~~~~~H~~~~~~~d~~~la~~g~~v 280 (442)
T PRK07203 204 DATLEKCREAVKETGRGYHIHVAEGIYDVSDSHKKYGKDI--VERLADF-GLLGEKTLAAHCIYLSDEEIDLLKETDTFV 280 (442)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecCChHHHHHHHHHcCCCH--HHHHHhC-CCCCCCcEEEEeecCCHHHHHHHHhcCCeE
Confidence 3467778899999999999999865321110 0 1123 2223222 223557889999665555666666543333
Q ss_pred EecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 003194 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (840)
Q Consensus 289 yld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (840)
-..+..-. ....|. ..+.++++.+- ++-.|||+.
T Consensus 281 ~~~P~sn~--~l~~g~-~p~~~~~~~Gv--~v~lGtD~~ 314 (442)
T PRK07203 281 VHNPESNM--GNAVGY-NPVLEMIKNGI--LLGLGTDGY 314 (442)
T ss_pred EECchhhh--hcccCC-CCHHHHHHCCC--eEEEcCCCC
Confidence 22221100 000011 12345555432 477999964
No 131
>PRK14085 imidazolonepropionase; Provisional
Probab=26.82 E-value=8.6e+02 Score=27.31 Aligned_cols=140 Identities=14% Similarity=0.099 Sum_probs=67.0
Q ss_pred hhhHHHHHHHHHHhhCCCcEEEeeCC-CCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCEeE
Q 003194 211 LIDYIFISSLEVAQFLDLPLQIHTGF-GDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVY 289 (840)
Q Consensus 211 l~d~~l~~l~e~~~e~glPvq~H~G~-gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~pNVy 289 (840)
+....+..+.+.+.++|+++.+|.+- ++. ..+..+.+ +.- ..+.|+.+.-..++..++..- +.
T Consensus 204 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~---------~~v~~~~~---~g~--~~i~H~~~l~~~~~~~la~~g--v~ 267 (382)
T PRK14085 204 FDEDQSRRVLTAGRAAGLGLRVHGNQLGPG---------PGVRLAVE---LGA--ASVDHCTYLTDADVDALAGSG--TV 267 (382)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEeCcccCC---------hHHHHHHH---cCC--CcHHHhCCCCHHHHHHHHHcC--CE
Confidence 34556778889999999999999852 211 11333333 111 125577544334444444322 22
Q ss_pred ecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCCCCcccchhhHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 003194 290 LDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDI 369 (840)
Q Consensus 290 ld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~I 369 (840)
+...-..+.....+. ..++++++.+ =++.+|||+. |...+ .......+. ..+....++.. +..+.+
T Consensus 268 ~~~~P~~~~~~~~~~-~~~~~l~~aG--v~v~lgsD~~--~~~~~--~~~~~~~~~----~~~~~~~l~~~---~al~~a 333 (382)
T PRK14085 268 ATLLPGAEFSTRQPY-PDARRLLDAG--VTVALASDCN--PGSSY--TSSMPFCVA----LAVRQMGMTPA---EAVWAA 333 (382)
T ss_pred EEECcHHHHhcCCCC-chHHHHHHCC--CcEEEEeCCC--CCCCh--HHHHHHHHH----HHHHhcCCCHH---HHHHHH
Confidence 111100000001111 2456666653 4788999953 21111 111121111 12223457764 345544
Q ss_pred HHHhHHHHhcCC
Q 003194 370 FALNAAQFYKIN 381 (840)
Q Consensus 370 l~~NA~rly~l~ 381 (840)
-.|++++++++
T Consensus 334 -T~~~A~~lg~~ 344 (382)
T PRK14085 334 -TAGGARALRRD 344 (382)
T ss_pred -HHHHHHHcCCC
Confidence 46777888885
No 132
>PRK12393 amidohydrolase; Provisional
Probab=26.17 E-value=7.2e+02 Score=28.83 Aligned_cols=109 Identities=13% Similarity=0.007 Sum_probs=56.4
Q ss_pred hhhHHHHHHHHHHhhCCCcEEEeeCCCCCCCC----cCCcChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCC
Q 003194 211 LIDYIFISSLEVAQFLDLPLQIHTGFGDKDLD----LRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYP 286 (840)
Q Consensus 211 l~d~~l~~l~e~~~e~glPvq~H~G~gd~~~~----~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~p 286 (840)
..+..+..+.+.+.++|+|+++|..-...... .....|. + .+..-.+-+-++++.|+.+.-..+...++..--
T Consensus 215 ~~~e~l~~~~~~a~~~g~~~~~H~~e~~~~~~~~~~~~g~~~~--~-~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~ 291 (457)
T PRK12393 215 LPPELLREVARAARGMGLRLHSHLSETVDYVDFCREKYGMTPV--Q-FVAEHDWLGPDVWFAHLVKLDAEEIALLAQTGT 291 (457)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHhCCCHH--H-HHHHcCCCCCCeEEEEEecCCHHHHHHHHHcCC
Confidence 34456778889999999999999975421100 0011231 1 112112234568899997665556666665433
Q ss_pred EeEecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 003194 287 QVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (840)
Q Consensus 287 NVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (840)
+|-.-... +.....|+ ..++++++. | -++.+|||+.
T Consensus 292 ~v~~~P~s--n~~lg~g~-~~~~~~~~~-G-v~v~lGtD~~ 327 (457)
T PRK12393 292 GIAHCPQS--NGRLGSGI-APALAMEAA-G-VPVSLGVDGA 327 (457)
T ss_pred eEEECchh--hhhhcccC-CCHHHHHHC-C-CeEEEecCCc
Confidence 33222211 00000011 134555554 3 3688999963
No 133
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=26.01 E-value=1.4e+02 Score=30.62 Aligned_cols=64 Identities=8% Similarity=0.069 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhCCCceeeeccCCCCC----------ceEEecCcchHHHHHhHHHHHHHHHHHHHHHcCCeeEeccccc
Q 003194 566 PVFQEVLADLHSLNISVEQLHAEAGKG----------QFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKFA 635 (840)
Q Consensus 566 ~~~~~i~~~l~~~Gi~ve~~h~E~gpG----------Q~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~Gl~ATFmpKP~ 635 (840)
-++.++.+.|.+.||+|+.+.++..+. ++|+.++.. -++--+|..+.++|.+.++.+++-|.-.
T Consensus 107 GIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~------~~~~~L~~~l~~l~~eL~vd~~l~~~~~ 180 (190)
T PRK11589 107 HLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS------QDAANIEQAFKALCTELNAQGSINVVNY 180 (190)
T ss_pred CHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC------CCHHHHHHHHHHHHHHhCceEEEEEeec
Confidence 588999999999999999999986654 345555543 2255678889999999999999988754
No 134
>TIGR03586 PseI pseudaminic acid synthase.
Probab=25.57 E-value=50 Score=36.74 Aligned_cols=52 Identities=19% Similarity=0.225 Sum_probs=31.4
Q ss_pred HHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCC--CCchHH
Q 003194 217 ISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA--SYPFSK 276 (840)
Q Consensus 217 ~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~--g~p~~~ 276 (840)
+|+++.+++.|+||.+=+|... ...-...-+.+. +.-+-+|+++|| +||..+
T Consensus 124 ~~LL~~va~~gkPvilstG~~t------~~Ei~~Av~~i~--~~g~~~i~LlhC~s~YP~~~ 177 (327)
T TIGR03586 124 LPLIRYVAKTGKPIIMSTGIAT------LEEIQEAVEACR--EAGCKDLVLLKCTSSYPAPL 177 (327)
T ss_pred HHHHHHHHhcCCcEEEECCCCC------HHHHHHHHHHHH--HCCCCcEEEEecCCCCCCCc
Confidence 5667888899999999999741 011111112222 111246999999 577644
No 135
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.56 E-value=1.5e+02 Score=23.44 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCceeeeccCCC--CCceEEecCcchHHHHHhHHHHHHHHHHHHHHHcCCe
Q 003194 567 VFQEVLADLHSLNISVEQLHAEAG--KGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLL 627 (840)
Q Consensus 567 ~~~~i~~~l~~~Gi~ve~~h~E~g--pGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~Gl~ 627 (840)
.+.++.+.+.+.|++|.+++.... +|.-.+.+.-.+ ...+++..+++|+.
T Consensus 12 ~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~-----------~~~~~~~L~~~G~~ 63 (65)
T cd04882 12 GLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED-----------IEKAIEVLQERGVE 63 (65)
T ss_pred HHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC-----------HHHHHHHHHHCCce
Confidence 567888999999999987654322 345555544443 23445566667764
No 136
>COG3572 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]
Probab=25.26 E-value=1.1e+02 Score=34.47 Aligned_cols=43 Identities=28% Similarity=0.298 Sum_probs=34.0
Q ss_pred cCCCCCceEEecCcchHH-HHHhHHHHHHHHHHHHHHHcCCeeEe
Q 003194 587 AEAGKGQFEIALGHTVAA-KAADNLIFTREVLRAVARKHGLLATF 630 (840)
Q Consensus 587 ~E~gpGQ~Ei~l~~~~~l-~aaD~~~~~r~~ik~vA~~~Gl~ATF 630 (840)
-|-| ||||++..|.+.+ +++-..-.--.+||++|...|+...+
T Consensus 93 lEpg-gq~Elsgapletihq~~~e~n~hlavlr~~a~~~gl~fvG 136 (456)
T COG3572 93 LEPG-GQFELSGAPLETIHQTCGEMNQHLAVLREIAAELGLGFVG 136 (456)
T ss_pred eccC-ceEEecCCchHHHHHHHHHHHHHHHHHHHHHHhcCCceEe
Confidence 3767 9999999998655 45666666677899999999998654
No 137
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=25.14 E-value=9.7e+02 Score=26.60 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHhCCCCCcCCchhhhhHHHHHHHHHHhhCCCcEEEeeCC
Q 003194 186 TKKDAEEGLAEDLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGF 236 (840)
Q Consensus 186 ~~~ea~~~~~r~l~~~~~~~~~~~~l~d~~l~~l~e~~~e~glPvq~H~G~ 236 (840)
++++..+.+.+..... ....+..+..+++.|.++|+|+..|...
T Consensus 142 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~iv~~A~~~gl~vasH~d~ 185 (325)
T cd01306 142 SDEEVEEAILERKARA-------AAYAPANRSELAALARARGIPLASHDDD 185 (325)
T ss_pred CHHHHHHHHHHHHHHh-------hhcCHHHHHHHHHHHHHCCCcEEEecCC
Confidence 6777777777765531 1222345678899999999999999864
No 138
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=24.64 E-value=6.9e+02 Score=27.74 Aligned_cols=24 Identities=29% Similarity=0.176 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCC
Q 003194 213 DYIFISSLEVAQFLDLPLQIHTGF 236 (840)
Q Consensus 213 d~~l~~l~e~~~e~glPvq~H~G~ 236 (840)
...+..+++.|.++|+++.+|.+-
T Consensus 192 ~~~~~~~~~~A~~~g~~v~~H~~e 215 (371)
T cd01296 192 LEQSRRILEAAKEAGLPVKIHADE 215 (371)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEcC
Confidence 446778899999999999999974
No 139
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=24.63 E-value=1.1e+03 Score=27.21 Aligned_cols=163 Identities=17% Similarity=0.107 Sum_probs=85.3
Q ss_pred hhhhHHHHHHHHHHhhCCCcEEEeeCCCC-----------CCCCcC-CcChh--------hhHHHHhhcCCCCcEEEEeC
Q 003194 210 SLIDYIFISSLEVAQFLDLPLQIHTGFGD-----------KDLDLR-LSNPL--------HLRAILEDKRFSKCRFVLLH 269 (840)
Q Consensus 210 ~l~d~~l~~l~e~~~e~glPvq~H~G~gd-----------~~~~~~-~~~P~--------~L~~l~~~~~~P~l~~VllH 269 (840)
.+++..+...++.+.+.|.++.+|.--.+ .+..+. ...|. ..-.+++ .-+.++.+.|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~~~~~~~~g~~~~~~~~~~~p~~aE~~~iar~~~la~---~~g~~vhi~H 230 (430)
T COG0044 154 ALDDDVLEEALEYAAELGALILVHAEDDDLIAEGVMNEGLRAPELGLAGRPPIAEASAIARDLELAR---ATGARVHICH 230 (430)
T ss_pred cCCHHHHHHHHHHHHhcCCeEEEecCChhHhhhHHHhcCccchhhccCCCChHHHHHHHHHHHHHHH---HhCCcEEEEE
Confidence 35555677778888899999999975421 011111 12221 1222333 3458999999
Q ss_pred CCCchHHHHHHHHHhC-CEeEecccc---------------cC---CCCcHHHHHHHHHHHHHHCCCCcEEEecCCCCCc
Q 003194 270 ASYPFSKEASYLAYVY-PQVYLDFGL---------------AI---PKLSVQGMISSIKELLELAPTKKVMFSTDAYASP 330 (840)
Q Consensus 270 ~g~p~~~e~~~la~~~-pNVyld~s~---------------~~---~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P 330 (840)
.+-....++..-+... .+|.++++. ++ |-+.....+..|.+.+..+.+| +.+||--++.
T Consensus 231 iSt~~sv~li~~ak~~g~~vt~EvtphHL~l~~~~~~~~~~~~k~nPPLR~~~dr~aL~~~l~~G~ID--~iasDHaPht 308 (430)
T COG0044 231 ISTKESVELIRAAKAEGIRVTAEVTPHHLLLDEEDIEDLGTLAKVNPPLRDEEDREALWEALKDGVID--VIASDHAPHT 308 (430)
T ss_pred cCCHHHHHHHHHHhhcCCceEEeecchheEccHhHhhccCcceEECCCCCCHHHHHHHHHHHhCCCCc--EEEcCCCCCC
Confidence 9876655554444333 234443332 11 1110111233344444322222 3688842222
Q ss_pred c--------cchhhHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHhcCCC
Q 003194 331 E--------TYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (840)
Q Consensus 331 e--------~~~~~~~~~R~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~~ 382 (840)
. ..+.+.-.....+.-.+. +|.+|.+|+. ..-+.+..|.+|+|+|+.
T Consensus 309 ~eeK~~~f~~ap~G~~glE~~lpl~l~-lv~~g~lsl~----~~v~~~S~nPA~ifgl~~ 363 (430)
T COG0044 309 LEEKRLPFEEAPSGIPGLETALPLLLT-LVKKGRLSLE----RLVELLSTNPARIFGLPP 363 (430)
T ss_pred HHHhccchhhCCCCCccHHHHHHHHHH-HHHcCCcCHH----HHHHHHhhCHHHHhCCCC
Confidence 1 011122223334444455 7889999984 566677899999999964
No 140
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.59 E-value=1.7e+02 Score=24.36 Aligned_cols=60 Identities=10% Similarity=0.026 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhCCCceeeeccC--CCCCceEEecCcchHHHHH-hHHHHHHHHHHHHHHHcCCe
Q 003194 566 PVFQEVLADLHSLNISVEQLHAE--AGKGQFEIALGHTVAAKAA-DNLIFTREVLRAVARKHGLL 627 (840)
Q Consensus 566 ~~~~~i~~~l~~~Gi~ve~~h~E--~gpGQ~Ei~l~~~~~l~aa-D~~~~~r~~ik~vA~~~Gl~ 627 (840)
-++.+|.+.|.+.|++|..++.- ...++|.+.+.-.-+ +. -+.-.++..+..++.+.|+.
T Consensus 11 Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~~l~~~l~~l~~~l~~~ 73 (74)
T cd04875 11 GIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE--GFDLSREALEAAFAPVAAEFDMD 73 (74)
T ss_pred CHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC--CCCCCHHHHHHHHHHHHHHcCCc
Confidence 47889999999999999999776 466677665554322 21 24667888889999887763
No 141
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=24.25 E-value=96 Score=27.45 Aligned_cols=61 Identities=15% Similarity=0.143 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHhCCCceeeeccCCCCCceEEecCcchHHHHHhHHHHHHHHHHHHHHHcCCeeEe
Q 003194 565 SPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATF 630 (840)
Q Consensus 565 ~~~~~~i~~~l~~~Gi~ve~~h~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~~Gl~ATF 630 (840)
...+..+...+.+.|++++-+..|+--..--+.+-|. ||.-+-||.++|.+++.++.++-+
T Consensus 25 ~~al~~c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~-----a~~rvDFR~Lvr~L~~~f~~RIem 85 (88)
T PF04468_consen 25 EEALKFCRELVKELGLPMKLVDVEYQFDGSKLTFYYT-----AESRVDFRELVRDLAREFKTRIEM 85 (88)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEEEEcCCCEEEEEEE-----eCCcCcHHHHHHHHHHHhCceEEE
Confidence 5677778888899999999999999877777888887 899999999999999999987643
No 142
>PRK05985 cytosine deaminase; Provisional
Probab=24.11 E-value=1e+03 Score=26.81 Aligned_cols=25 Identities=12% Similarity=0.003 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCC
Q 003194 213 DYIFISSLEVAQFLDLPLQIHTGFG 237 (840)
Q Consensus 213 d~~l~~l~e~~~e~glPvq~H~G~g 237 (840)
+..+..+++.|+++|+|+.+|+...
T Consensus 190 ~~~l~~~~~~A~~~g~~i~~Hv~e~ 214 (391)
T PRK05985 190 EGQLDIVFGLAERHGVGIDIHLHEP 214 (391)
T ss_pred HHHHHHHHHHHHHhCCCcEEeeCCC
Confidence 3567888999999999999998653
No 143
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=23.79 E-value=7.2e+02 Score=28.40 Aligned_cols=107 Identities=20% Similarity=0.194 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCCCCCC----cCCcChhhhHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCE
Q 003194 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLD----LRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (840)
Q Consensus 212 ~d~~l~~l~e~~~e~glPvq~H~G~gd~~~~----~~~~~P~~L~~l~~~~~~P~l~~VllH~g~p~~~e~~~la~~~pN 287 (840)
.+..+..+.+.|.+ |+++++|.+-+..... ..-..| ++.+.+. -+-+-++++.|+.+--..++..|+..--+
T Consensus 205 s~e~l~~~~~~a~~-g~~i~~H~~e~~~e~~~~~~~~g~~~--i~~l~~~-g~l~~~~~~~H~~~l~~~~~~~la~~g~~ 280 (418)
T cd01313 205 PAEQLAALAALASE-KAPVHIHLAEQPKEVDDCLAAHGRRP--VELLLDH-GHLDARWCLVHATHLTDNETLLLGRSGAV 280 (418)
T ss_pred CHHHHHHHHHHHhc-CCceEEEeCCCHHHHHHHHHHcCCCH--HHHHHHc-CCCCCCEEEEeCCCCCHHHHHHHHHcCCE
Confidence 34456777888999 9999999964321110 011223 2323332 23356788999965444566666544333
Q ss_pred eEecccccCCCCcHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 003194 288 VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (840)
Q Consensus 288 Vyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (840)
|-..+..-.. . ..|+ .-++++++.+ =++-+|||+.
T Consensus 281 v~~~P~sn~~-l-g~g~-~p~~~l~~~G--v~v~lGtD~~ 315 (418)
T cd01313 281 VGLCPTTEAN-L-GDGI-FPAAALLAAG--GRIGIGSDSN 315 (418)
T ss_pred EEECCCchhh-c-cCCC-CCHHHHHHCC--CcEEEecCCC
Confidence 3332221100 0 0011 1234555533 3788999953
No 144
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=23.69 E-value=49 Score=36.84 Aligned_cols=70 Identities=20% Similarity=0.302 Sum_probs=38.2
Q ss_pred HHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHHhhcCCCCcEEEEeCC--CCchHHH------HHHHHHhCCEe
Q 003194 217 ISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA--SYPFSKE------ASYLAYVYPQV 288 (840)
Q Consensus 217 ~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~~VllH~--g~p~~~e------~~~la~~~pNV 288 (840)
+|+++.+++.|+||.+=+|... ...-...-+.++...-++-+|+++|| +||...+ +..|...|+ +
T Consensus 123 ~pLL~~~A~~gkPvilStGmat------l~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~-~ 195 (329)
T TIGR03569 123 APLLKKIARFGKPVILSTGMAT------LEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFD-L 195 (329)
T ss_pred HHHHHHHHhcCCcEEEECCCCC------HHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhC-C
Confidence 5678888899999999999741 00101111222311112225999999 4776433 334455563 4
Q ss_pred Eeccc
Q 003194 289 YLDFG 293 (840)
Q Consensus 289 yld~s 293 (840)
-++.|
T Consensus 196 pVG~S 200 (329)
T TIGR03569 196 PVGYS 200 (329)
T ss_pred CEEEC
Confidence 44433
No 145
>PRK07627 dihydroorotase; Provisional
Probab=22.80 E-value=5.3e+02 Score=29.74 Aligned_cols=83 Identities=17% Similarity=0.087 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCC---CCC--------C-cCCcChh-----hhHHHHhhcCCCCcEEEEeCCCCch
Q 003194 212 IDYIFISSLEVAQFLDLPLQIHTGFGD---KDL--------D-LRLSNPL-----HLRAILEDKRFSKCRFVLLHASYPF 274 (840)
Q Consensus 212 ~d~~l~~l~e~~~e~glPvq~H~G~gd---~~~--------~-~~~~~P~-----~L~~l~~~~~~P~l~~VllH~g~p~ 274 (840)
++..+..+++.++++|.++.+|.--.. .+. . ...+.|. .+..++.--+.-+.++.+.|.+-+.
T Consensus 159 ~~~~l~~~~~~~~~~~~~v~~H~E~~~~~~~~~~~~g~~~~~~~~~~~P~~aE~~av~r~~~la~~~~~~~hi~HvSs~~ 238 (425)
T PRK07627 159 DTQVLLRALQYASTFGFTVWLRPLDAFLGRGGVAASGAVASRLGLSGVPVAAETIALHTIFELMRVTGARVHLARLSSAA 238 (425)
T ss_pred CHHHHHHHHHHHHhcCCEEEEecCChhhhhCCCcCCCHhHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHH
Confidence 344567777888899999999975311 000 0 0112242 2222222113457899999998766
Q ss_pred HHHHHHHHHhC-CEeEecccc
Q 003194 275 SKEASYLAYVY-PQVYLDFGL 294 (840)
Q Consensus 275 ~~e~~~la~~~-pNVyld~s~ 294 (840)
..++..-++.. -+|+.+++.
T Consensus 239 ~~~~i~~ak~~g~~vt~Ev~p 259 (425)
T PRK07627 239 GVALVRAAKAEGLPVTCDVGV 259 (425)
T ss_pred HHHHHHHHHHCCCCeEEEecc
Confidence 65555544332 256665543
No 146
>PRK09236 dihydroorotase; Reviewed
Probab=22.17 E-value=1.1e+03 Score=27.12 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=18.7
Q ss_pred hhcCCCCChhHHHHHHHHHHHHhHHHHhcCC
Q 003194 351 TCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (840)
Q Consensus 351 ~v~~g~l~~~ea~~~~~~Il~~NA~rly~l~ 381 (840)
.+.++.++.. .+-+++..|.+++|+++
T Consensus 342 ~v~~~~~~~~----~~~~~~t~~pA~~lgl~ 368 (444)
T PRK09236 342 LVHEGKLSLE----KVVEKTSHAPAILFDIK 368 (444)
T ss_pred HHHhcCCCHH----HHHHHHHHhHHHhcCCC
Confidence 4556778874 34455668888999984
No 147
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=21.23 E-value=1.6e+02 Score=27.03 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH
Q 003194 340 AREVVFSVLRDTCIDEDLSVGEAIEVAKDIFA 371 (840)
Q Consensus 340 ~R~~l~~~l~~~v~~g~l~~~ea~~~~~~Il~ 371 (840)
.++-+..++.+||++|+++.++|.+.+.+++.
T Consensus 22 ~~ek~~klvDelVkkGeln~eEak~~vddl~~ 53 (108)
T COG3937 22 TAEKVQKLVDELVKKGELNAEEAKRFVDDLLR 53 (108)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 45667788899999999999998888888774
No 148
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=21.05 E-value=2e+02 Score=32.23 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=47.5
Q ss_pred cHHHHHHHHHHHHHhhc---cccccceeeecccCCCCCCCCCCHHHHHHHHHHHHh-----CC--CCCcCCchhh---hh
Q 003194 147 TLDVFIETFLKQLRSAA---NKIVGLKSIAAYRSGLEINPHVTKKDAEEGLAEDLR-----SG--KPVRITNKSL---ID 213 (840)
Q Consensus 147 ~~~~~~~al~~~l~~~~---~~~vgfks~~~y~~Gl~~~p~~~~~ea~~~~~r~l~-----~~--~~~~~~~~~l---~d 213 (840)
+++++++++.+.++.+. ...++.+-|.|....+ +++++.+.++-+.. .. .+..+.+.+. .-
T Consensus 105 ~~~~v~~av~~~~~~~~~~~~~~i~v~lI~~~~R~~------~~e~~~e~~~~a~~~~~~~~~~VvGidL~G~E~~~~~~ 178 (345)
T cd01321 105 DYEETVQLLEEVVEKFKKTHPDFIGLKIIYATLRNF------NDSEIKESMEQCLNLKKKFPDFIAGFDLVGQEDAGRPL 178 (345)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCC------CHHHHHHHHHHHHHHHHhCCCeEEEEecCCCccCCCCH
Confidence 56777777776665532 1135566666653333 33444444444332 10 1122222221 12
Q ss_pred HHHHHHHHHHhhCC--CcEEEeeCCC
Q 003194 214 YIFISSLEVAQFLD--LPLQIHTGFG 237 (840)
Q Consensus 214 ~~l~~l~e~~~e~g--lPvq~H~G~g 237 (840)
..+.++++.+.+.| +++.+|.|-.
T Consensus 179 ~~f~~~f~~ar~~g~~l~~t~HAGE~ 204 (345)
T cd01321 179 LDFLPQLLWFPKQCAEIPFFFHAGET 204 (345)
T ss_pred HHHHHHHHHHHHhCCCCceEeecCCC
Confidence 35678999999999 9999999953
No 149
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=20.92 E-value=1.1e+03 Score=26.30 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhCCCcEEEeeCC
Q 003194 215 IFISSLEVAQFLDLPLQIHTGF 236 (840)
Q Consensus 215 ~l~~l~e~~~e~glPvq~H~G~ 236 (840)
.+..+++.|.++|+|+.+|.+-
T Consensus 198 ~~~~~~~~A~~~g~~v~~H~~e 219 (377)
T TIGR01224 198 QSRRILQAAQEAGLPVKLHAEE 219 (377)
T ss_pred HHHHHHHHHHHCCCCEEEEecC
Confidence 5677889999999999999974
No 150
>PRK09358 adenosine deaminase; Provisional
Probab=20.64 E-value=3.6e+02 Score=29.86 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhCCCcEEEeeCCC
Q 003194 214 YIFISSLEVAQFLDLPLQIHTGFG 237 (840)
Q Consensus 214 ~~l~~l~e~~~e~glPvq~H~G~g 237 (840)
..+.++++.|.++|+++.+|.|-.
T Consensus 182 ~~~~~~~~~A~~~g~~~~~H~~E~ 205 (340)
T PRK09358 182 SKFARAFDRARDAGLRLTAHAGEA 205 (340)
T ss_pred HHHHHHHHHHHHCCCCeEEcCCCC
Confidence 467899999999999999999853
No 151
>PRK06886 hypothetical protein; Validated
Probab=20.02 E-value=1.2e+03 Score=25.85 Aligned_cols=51 Identities=16% Similarity=0.093 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCCCCCCCcCCcChhhhHHHH----hhcCCCCcEEEEeCCC
Q 003194 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAIL----EDKRFSKCRFVLLHAS 271 (840)
Q Consensus 213 d~~l~~l~e~~~e~glPvq~H~G~gd~~~~~~~~~P~~L~~l~----~~~~~P~l~~VllH~g 271 (840)
+..+..++++|+++|+||.+|+..++... ...+..+. +. .+-+ ++++.|+.
T Consensus 161 ~e~l~~~~~lA~~~g~~Id~Hlde~~~~~------~~~le~l~~~~~~~-Gl~g-rV~~sH~~ 215 (329)
T PRK06886 161 LEAMDILLDTAKSLGKMVHVHVDQFNTPK------EKETEQLCDKTIEH-GMQG-RVVAIHGI 215 (329)
T ss_pred HHHHHHHHHHHHHcCCCeEEeECCCCchh------HHHHHHHHHHHHHc-CCCC-CEEEEEec
Confidence 34577889999999999999998653110 11233333 33 3444 79999983
Done!