RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 003194
(840 letters)
>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal
domain {Salmonella typhimurium [TaxId: 90371]}
Length = 368
Score = 193 bits (490), Expect = 3e-55
Identities = 88/359 (24%), Positives = 146/359 (40%), Gaps = 41/359 (11%)
Query: 503 EYCPREALRKVSRLLKEE-FNLVLNAGFEIEFYLLKSV---------------------- 539
+ PR ++ L+ + G E EF+L +
Sbjct: 1 DRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNS 60
Query: 540 ---LREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEA-GKGQFE 595
G + P Y D+ + E+ + + + VE H E GQ E
Sbjct: 61 STKYEGGNKGHRPGVKGGYFPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNE 120
Query: 596 IALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGEN 655
+A K AD + + V+ VA + G ATF+PK D GSG H H+SL +NG N
Sbjct: 121 VATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLAKNGTN 180
Query: 656 VFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNSYDRIQPNTWSGAYQCWGKE 715
+F G+S ++ GV+ H +I A P NSY R+ P + +
Sbjct: 181 LF---SGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSAR 237
Query: 716 NREAPLRTACPPGVKDGVVSNFELKSFDGCANPHLGLAAIIASGIDGLR-RLCLPEPIDA 774
NR A +R K E++ D ANP+L AA++ +G+DG++ ++ EP+D
Sbjct: 238 NRSASIRIPVVASPKA---RRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEPMDK 294
Query: 775 NPASLDG----KLQRLPTSLSESVQALEKDDILR---DMIGEKLLIAIKGIRKAEINYY 826
N L ++ ++ SL E++ AL+ D + ++ + A +R+ E +
Sbjct: 295 NLYDLPPEEAKEIPQVAGSLEEALNALDLDREFLKAGGVFTDEAIDAYIALRREEDDRV 353
>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal
domain {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 374
Score = 172 bits (437), Expect = 5e-48
Identities = 92/365 (25%), Positives = 148/365 (40%), Gaps = 47/365 (12%)
Query: 505 CPREALRKVSRLLKEE-FNLVLNAGFEIEFYLLKSVLRE--------------------- 542
PR RK L G E EFY+ SV +
Sbjct: 3 DPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGA 62
Query: 543 -------GKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQ-F 594
+ Y A D + ++L +L + +E+ H E G G
Sbjct: 63 ATEADGSPNRGYKVRHKGGYFPVAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQA 122
Query: 595 EIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPKFALDDIGSGSHVHLSLWQNGE 654
EI AAD++ + +++ A ++G TF+PK D GSG H H SLW++G
Sbjct: 123 EINYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMPKPLFGDNGSGMHCHQSLWKDGA 182
Query: 655 NVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNSYDRIQPNTWSGAYQCWGK 714
+ D + G+S ++ G+LHH S+LAFT P NSY R+ P + + +
Sbjct: 183 PLMY--DETGYAGLSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRLVPGYEAPINLVYSQ 240
Query: 715 ENREAPLRTACPPGVKDGVVSNFELKSFDGCANPHLGLAAIIASGIDGLRRLC-LPEPID 773
NR A +R P + E +S D NP+L +A++ +G+DG++ P+D
Sbjct: 241 RNRSACVR--IPITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVD 298
Query: 774 ANPASLDGK----LQRLPTSLSESVQALEKDDILR---DMIGEKLL---IAIKGIRKAEI 823
+ L + + + PT LS+ + LE D + L+ I+ K R+ EI
Sbjct: 299 KDLYELPPEEAASIPQTPTQLSDVIDRLEADHEYLTEGGVFTNDLIETWISFK--RENEI 356
Query: 824 NYYSL 828
++
Sbjct: 357 EPVNI 361
>d2qeec1 c.1.9.8 (C:2-416) Uncharacterized protein BH0493 {Bacillus
halodurans [TaxId: 86665]}
Length = 415
Score = 159 bits (403), Expect = 7e-43
Identities = 61/436 (13%), Positives = 120/436 (27%), Gaps = 89/436 (20%)
Query: 4 EELREVVENIELVDGHAHNIVSLDSSFPF--------------------IQSFSEATGPA 43
E+++ V N + D H H S +
Sbjct: 10 EKVKNAVNNQPVTDMHTHLFSPNFGEILLWDIDELLTYHYLVAEVMRWTDVSIEAFWAMS 69
Query: 44 LSY-------------APYSLSFKRNLKNIAELYG--CDSSLQAVEEYRRAAGLQSICSI 88
+P S + + L + L LQ EY +
Sbjct: 70 KREQADLIWEELFIKRSPVSEACRGVLTCLQGLGLDPATRDLQVYREYFAKKTSEEQVDT 129
Query: 89 CFEAANISAVLIDDGLKLDKKHGLDWHKSLV-----PFVGRILRIERLAEEILDQASPDG 143
+ AN+S V++ + D + L LR++ L E
Sbjct: 130 VLQLANVSDVVMTNDPFDD----NERISWLEGKQPDSRFHAALRLDPLLNEYEQTK---- 181
Query: 144 SIWTLDVFIETFLKQLRSAANKIVGLKSIAAYRSGLE-----INPHVTKKDAEEGLAEDL 198
L+ N SI + L ++P +
Sbjct: 182 ----------HRLRDWGYKVNDEWNEGSIQEVKRFLTDWIERMDPVYMAVSLPPTFSFPE 231
Query: 199 RSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTG--------FGDKDLDLRLSNPLH 250
S + I L VA+ ++P + G GD + ++
Sbjct: 232 ES---------NRGRIIRDCLLPVAEKHNIPFAMMIGVKKRVHPALGDAGDFVGKASMDG 282
Query: 251 LRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLAIPKLSVQGMISSIKE 310
+ +L + +F++ S E LA + + + G + + + +
Sbjct: 283 VEHLLR--EYPNNKFLVTMLSRENQHELVVLARKFSNLMIF-GCWWFMNNPEIINEMTRM 339
Query: 311 LLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCID-----EDLSVGEAIEV 365
+E+ T + +DA + ++ ++ VL D D +++ E
Sbjct: 340 RMEMLGTSFIPQHSDARVLEQLI-YKWHHSKSIIAEVLIDKYDDILQAGWEVTEEEIKRD 398
Query: 366 AKDIFALNAAQFYKIN 381
D+F+ N +F N
Sbjct: 399 VADLFSRNFWRFVGRN 414
>d1j5sa_ c.1.9.8 (A:) Uronate isomerase TM0064 {Thermotoga maritima
[TaxId: 2336]}
Length = 451
Score = 133 bits (335), Expect = 9e-34
Identities = 58/443 (13%), Positives = 116/443 (26%), Gaps = 76/443 (17%)
Query: 4 EELREVVENIELVDGHAHNIVSL---DSSFPFI-------------------QSFSEATG 41
L V+++ +VD H H + + I S TG
Sbjct: 16 VRLFNEVKDLPIVDPHNHLDAKDIVENKPWNDIWEVEGATDHYVWELMRRCGVSEEYITG 75
Query: 42 PALSYA---------------PYSLSFKRNLKNIAELYGCDSSLQAVEEYRRAAGL--QS 84
+ P +L + S A E + +
Sbjct: 76 SRSNKEKWLALAKVFPRFVGNPTYEWIHLDLWRRFNIKKVISEETAEEIWEETKKKLPEM 135
Query: 85 ICSICFEAANISAVLIDDGLKLDKKHGLDWHKSL-----VPFVGRILRIERLAEEILDQA 139
+ + D L+ H+ + R +R + +
Sbjct: 136 TPQKLLRDMKVEILCTTDDPVST----LEHHRKAKEAVEGVTILPTWRPDRA-MNVDKEG 190
Query: 140 SPD-----GSIWTLDV-FIETFLKQLRSAANKIVGLKSIAAYRSGLEINP--HVTKKDAE 191
+ G + D ++ FL L + A L +V + A
Sbjct: 191 WREYVEKMGERYGEDTSTLDGFLNALWKSHEHF-KEHGCVASDHALLEPSVYYVDENRAR 249
Query: 192 EGLAEDLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTG-------------FGD 238
+ K + ++ + ++ Q + Q+H G D
Sbjct: 250 AVHEKAFSGEKLTQDEINDYKAFMMVQFGKMNQETNWVTQLHIGALRDYRDSLFKTLGPD 309
Query: 239 KDLDLRLSNPLHLRAI--LEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLAI 296
D+ + + ++ K + VL S +A +P VY+
Sbjct: 310 SGGDISTNFLRIAEGLRYFLNEFDGKLKIVLYVLDPTHLPTISTIARAFPNVYVGAPWWF 369
Query: 297 PKLSVQGMISSIKELLELAPTKK-VMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDE 355
S GM +K L + TD+ + + R V+ +V+ +
Sbjct: 370 N-DSPFGMEMHLKYLASVDLLYNLAGMVTDSRKLLS-FGSRTEMFRRVLSNVVGEMVEKG 427
Query: 356 DLSVGEAIEVAKDIFALNAAQFY 378
+ + EA E+ K + +
Sbjct: 428 QIPIKEARELVKHVSYDGPKALF 450
>d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein
{Escherichia coli [TaxId: 562]}
Length = 291
Score = 45.7 bits (107), Expect = 1e-05
Identities = 27/173 (15%), Positives = 48/173 (27%), Gaps = 14/173 (8%)
Query: 208 NKSLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVL 267
L + +FI++ P+ HT F L+ L + V
Sbjct: 132 ITPLEEKVFIAAALAHNQTGRPISTHTSFSTMGLE-------QLALLQAHGVDLSRVTVG 184
Query: 268 LHASYPFSKEASYLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDA- 326
+ + V D + I+ + L + +VM S D
Sbjct: 185 HCDLKDNLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDIT 244
Query: 327 YASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYK 379
S G + L T I + G + + N +QF++
Sbjct: 245 RRSHLKANGGYG------YDYLLTTFIPQLRQSGFSQADVDVMLRENPSQFFQ 291
>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain
{Salmonella typhimurium [TaxId: 90371]}
Length = 100
Score = 40.7 bits (95), Expect = 6e-05
Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 10/87 (11%)
Query: 405 ESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLS 464
E +V + + + D G+ + +P + N + G + +G ++
Sbjct: 11 EHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKGINES------- 63
Query: 465 GTGEIRLMPDLSTRWRIPWQKQEEMIM 491
++ LMPD ST P+ +I+
Sbjct: 64 ---DMVLMPDASTAVIDPFFADSTLII 87
>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal domain
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 100
Score = 37.6 bits (87), Expect = 7e-04
Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 405 ESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLS 464
+ V + V + D G + +P F+ V G+ + + ++
Sbjct: 11 DEKVEYVDVRFCDLPGIMQHFTIPASAFDKSVFDDGLAFDGSSIRGFQSIHES------- 63
Query: 465 GTGEIRLMPDLSTRWRIPWQKQEEMIM 491
++ L+PD T P++ + + +
Sbjct: 64 ---DMLLLPDPETARIDPFRAAKTLNI 87
>d2gwga1 c.1.9.15 (A:1-342) 4-oxalomesaconate hydratase LigJ
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 342
Score = 36.0 bits (81), Expect = 0.017
Identities = 28/181 (15%), Positives = 52/181 (28%), Gaps = 23/181 (12%)
Query: 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLS-------NPLHLRAILED--KRFSKC 263
D I+ E L++P IH ++ + D K F +
Sbjct: 158 DRIWYPIYEKMVELEIPAMIHVSTSCNTCFHTTGAHYLNADTTAFMQCVAGDLFKDFPEL 217
Query: 264 RFVLLH--ASYPFSKEASYLAYVY---PQVYLDFGLAIPKLSVQGMISSIKELLELAPTK 318
+FV+ H + P+ P + I + I L + P
Sbjct: 218 KFVIPHGGGAVPYHWGRFRGLAQEMKKPLLEDHVLNNIFFDTCVYHQPGIDLLNTVIPVD 277
Query: 319 KVMFSTD-AYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQF 377
V+F+++ A + + T + E + I+ NA +
Sbjct: 278 NVLFASEMIGAVRGIDPRTGFYYDDTKRYIEASTILTP--------EEKQQIYEGNARRV 329
Query: 378 Y 378
Y
Sbjct: 330 Y 330
>d2dvta1 c.1.9.15 (A:1-325) Thermophilic reversible
gamma-resorcylate decarboxylase {Rhizobium sp. MTP-10005
[TaxId: 267998]}
Length = 325
Score = 30.8 bits (68), Expect = 0.69
Identities = 15/137 (10%), Positives = 35/137 (25%), Gaps = 33/137 (24%)
Query: 259 RFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLAIPKLSVQGMISS----------- 307
+ +L H + + V L + + +
Sbjct: 208 EHPRLNIILGHMGEGLPYMMWRIDHRNAWVKLPPRYPAKRRFMDYFNENFHITTSGNFRT 267
Query: 308 --IKELLELAPTKKVMFSTD-AYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIE 364
+ + + +++FSTD + + + T I E
Sbjct: 268 QTLIDAILEIGADRILFSTDWPFENIDHAS-----------DWFNATSIAE--------A 308
Query: 365 VAKDIFALNAAQFYKIN 381
I NA + +K++
Sbjct: 309 DRVKIGRTNARRLFKLD 325
>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia
coli [TaxId: 562]}
Length = 880
Score = 30.5 bits (68), Expect = 1.1
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 789 SLSESVQALEK--DDILRDMIGEKLLIAIKGIRKAEINYYSLNKDAYKQLI 837
+L +V L K + ++D +GE +L ++ IRK + + N ++L+
Sbjct: 4 ALRSNVSMLGKVLGETIKDALGEHILERVETIRKLSKSSRAGNDANRQELL 54
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 29.6 bits (66), Expect = 1.2
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 8/94 (8%)
Query: 279 SYLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAK 338
S LA + + D G V + + E +F D + A
Sbjct: 110 SNLALQFGEEDADPGAMSRPFGVALLFGGVDE------KGPQLFHMDPSGTFVQCDARAI 163
Query: 339 -RAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFA 371
A E S L++ + +++ EAI+ + I
Sbjct: 164 GSASEGAQSSLQE-LYHKSMTLKEAIKSSLIILK 196
>d2hbva1 c.1.9.15 (A:3-333) 2-amino-3-carboxymuconate 6-semialdehyde
decarboxylase NbaD {Pseudomonas fluorescens [TaxId:
294]}
Length = 331
Score = 30.2 bits (66), Expect = 1.2
Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 17/75 (22%)
Query: 307 SIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVA 366
+++ L+ + +VM +D P + LG ++ +V + + E
Sbjct: 274 ALELLVSVMGEDRVMLGSD---YP--FPLGEQKIGGLV----LSSNLGE--------SAK 316
Query: 367 KDIFALNAAQFYKIN 381
I + NA++F+ IN
Sbjct: 317 DKIISGNASKFFNIN 331
>d2ff4a1 a.4.6.1 (A:10-104) Probable regulatory protein EmbR
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 95
Score = 27.6 bits (61), Expect = 1.8
Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 123 GRILRIERLAEEILDQASPDGSIWTLDVFIETFLKQLRSAANKIVGLKSI--AAYR 176
R + ++ L + ++ P G+ ++ ++ K L A + + YR
Sbjct: 38 NRPVGVDALITALWEEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYR 93
>d2ffia1 c.1.9.15 (A:10-280) Putative 2-pyrone-4,6-dicarboxylic acid
hydrolase PP1699 {Pseudomonas putida [TaxId: 303]}
Length = 271
Score = 29.0 bits (63), Expect = 2.4
Identities = 22/162 (13%), Positives = 52/162 (32%), Gaps = 13/162 (8%)
Query: 220 LEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEAS 279
LE +++H D + +R P L +++ R L + S
Sbjct: 121 LERIGEQGWHVELHRQVADIPVLVRALQPYGLDIVIDHFGRPDARRGLGQPGFAELLTLS 180
Query: 280 YLAYVYPQVYLDFGL-AIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAK 338
V+ +V + L P+ ++ ++ L +++M+ +D + +
Sbjct: 181 GRGKVWVKVSGIYRLQGSPEENLAFARQALCALEAHYGAERLMWGSD--------WPHTQ 232
Query: 339 RAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKI 380
EV F + S ++ + + A +
Sbjct: 233 HESEVSFGSAVEQFEALGCSA----QLRQALLLDTARALFGF 270
>d2f6ka1 c.1.9.15 (A:2-307) Putative amidohydrolase LP2961
{Lactobacillus plantarum [TaxId: 1590]}
Length = 306
Score = 27.7 bits (60), Expect = 6.4
Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 14/72 (19%)
Query: 308 IKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAK 367
+ L+ LA + +++ +D +P +R++ ++ + E +
Sbjct: 248 LPTLMSLAQPEHLLYGSDIPYTPLDG------SRQLGHALATTDLLTN--------EQKQ 293
Query: 368 DIFALNAAQFYK 379
IF NA +
Sbjct: 294 AIFYDNAHRLLT 305
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.401
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,177,414
Number of extensions: 154472
Number of successful extensions: 419
Number of sequences better than 10.0: 1
Number of HSP's gapped: 398
Number of HSP's successfully gapped: 18
Length of query: 840
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 747
Effective length of database: 1,130,706
Effective search space: 844637382
Effective search space used: 844637382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.1 bits)