Query 003195
Match_columns 840
No_of_seqs 403 out of 1297
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 18:52:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003195.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003195hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0915 Uncharacterized conser 100.0 8E-120 2E-124 1049.8 68.3 798 1-836 885-1692(1702)
2 KOG1824 TATA-binding protein-i 100.0 2.2E-44 4.9E-49 403.1 41.2 539 161-803 9-617 (1233)
3 KOG2023 Nuclear transport rece 100.0 9.9E-35 2.1E-39 316.1 43.3 612 3-653 50-797 (885)
4 KOG2171 Karyopherin (importin) 100.0 1.7E-29 3.7E-34 293.6 55.5 570 36-648 305-975 (1075)
5 KOG2171 Karyopherin (importin) 100.0 1E-29 2.3E-34 295.4 51.7 708 4-802 68-890 (1075)
6 KOG1241 Karyopherin (importin) 99.9 5.3E-23 1.1E-27 228.9 43.2 490 93-653 235-835 (859)
7 KOG1241 Karyopherin (importin) 99.9 4.8E-23 1E-27 229.3 36.6 429 56-557 343-820 (859)
8 KOG2023 Nuclear transport rece 99.9 5.1E-22 1.1E-26 217.4 34.5 483 58-569 374-879 (885)
9 KOG1824 TATA-binding protein-i 99.9 9.8E-19 2.1E-23 198.1 47.6 657 58-823 2-718 (1233)
10 COG5215 KAP95 Karyopherin (imp 99.9 8.6E-18 1.9E-22 181.5 41.8 538 42-654 178-834 (858)
11 COG5215 KAP95 Karyopherin (imp 99.8 8.4E-18 1.8E-22 181.6 33.0 432 56-558 345-820 (858)
12 KOG1242 Protein containing ada 99.8 2.1E-16 4.6E-21 175.4 28.6 462 56-539 37-555 (569)
13 KOG1242 Protein containing ada 99.7 1.4E-14 3.1E-19 161.1 38.5 436 125-655 26-465 (569)
14 KOG0213 Splicing factor 3b, su 99.6 8.8E-12 1.9E-16 138.9 44.3 523 58-639 495-1070(1172)
15 KOG0915 Uncharacterized conser 99.6 2.1E-12 4.6E-17 154.1 41.8 466 154-718 815-1365(1702)
16 PLN03200 cellulose synthase-in 99.6 2.3E-11 4.9E-16 154.0 47.7 537 75-655 190-792 (2102)
17 PLN03200 cellulose synthase-in 99.6 2.5E-11 5.5E-16 153.5 47.9 652 73-786 98-859 (2102)
18 KOG0213 Splicing factor 3b, su 99.6 4.2E-11 9.2E-16 133.6 42.7 536 56-653 380-935 (1172)
19 KOG0212 Uncharacterized conser 99.6 3.2E-11 6.9E-16 131.7 39.6 442 161-650 4-460 (675)
20 KOG0211 Protein phosphatase 2A 99.6 5.8E-12 1.3E-16 147.5 35.6 451 58-550 178-666 (759)
21 KOG0212 Uncharacterized conser 99.5 9.1E-12 2E-16 135.9 27.6 420 88-551 13-447 (675)
22 KOG0211 Protein phosphatase 2A 99.5 5.1E-11 1.1E-15 139.7 32.6 499 56-659 99-611 (759)
23 PF01602 Adaptin_N: Adaptin N 99.5 3.4E-09 7.3E-14 124.7 46.9 467 114-632 40-522 (526)
24 COG5181 HSH155 U2 snRNP splice 99.4 5.3E-10 1.1E-14 122.8 36.2 519 59-639 301-875 (975)
25 PF01602 Adaptin_N: Adaptin N 99.3 5E-08 1.1E-12 114.8 43.9 419 131-638 22-448 (526)
26 PTZ00429 beta-adaptin; Provisi 99.3 1.5E-07 3.2E-12 112.2 46.6 420 130-638 47-475 (746)
27 COG5181 HSH155 U2 snRNP splice 99.2 4.5E-09 9.8E-14 115.7 25.2 538 56-653 185-740 (975)
28 PRK13800 putative oxidoreducta 99.1 1.4E-08 3E-13 126.0 26.8 266 260-631 630-896 (897)
29 PTZ00429 beta-adaptin; Provisi 99.0 8.3E-06 1.8E-10 97.5 45.9 458 115-633 67-544 (746)
30 PRK09687 putative lyase; Provi 99.0 3.7E-08 8.1E-13 105.1 23.7 242 88-425 36-278 (280)
31 KOG1060 Vesicle coat complex A 99.0 3.2E-06 6.8E-11 96.5 37.6 447 116-637 39-499 (968)
32 PRK13800 putative oxidoreducta 99.0 7.6E-08 1.7E-12 119.4 27.1 177 362-586 719-896 (897)
33 PRK09687 putative lyase; Provi 99.0 1E-07 2.2E-12 101.7 23.9 255 156-502 22-277 (280)
34 PF12755 Vac14_Fab1_bd: Vacuol 98.9 1.1E-08 2.4E-13 90.2 10.4 72 149-221 19-90 (97)
35 KOG1943 Beta-tubulin folding c 98.9 0.00018 3.9E-09 85.5 46.0 535 74-655 122-729 (1133)
36 PF12755 Vac14_Fab1_bd: Vacuol 98.8 1.6E-08 3.4E-13 89.3 9.5 90 90-179 1-90 (97)
37 KOG1248 Uncharacterized conser 98.8 0.00028 6E-09 84.9 46.4 499 95-640 370-904 (1176)
38 KOG0166 Karyopherin (importin) 98.8 9.1E-07 2E-11 99.0 24.2 315 74-464 109-434 (514)
39 KOG1991 Nuclear transport rece 98.8 0.0012 2.5E-08 78.3 50.2 608 116-827 93-797 (1010)
40 KOG1943 Beta-tubulin folding c 98.8 0.00016 3.5E-09 85.9 42.2 348 151-550 335-707 (1133)
41 PF10508 Proteasom_PSMB: Prote 98.8 3.5E-05 7.6E-10 89.5 37.1 380 98-589 61-462 (503)
42 PF12460 MMS19_C: RNAPII trans 98.7 3.5E-05 7.5E-10 87.6 34.5 390 118-567 1-413 (415)
43 KOG1992 Nuclear export recepto 98.7 0.00097 2.1E-08 77.3 44.3 466 73-589 36-577 (960)
44 PF10508 Proteasom_PSMB: Prote 98.7 2.4E-05 5.3E-10 90.9 31.6 291 341-637 60-369 (503)
45 KOG0166 Karyopherin (importin) 98.6 6.8E-05 1.5E-09 84.3 29.7 319 247-590 106-437 (514)
46 PF12460 MMS19_C: RNAPII trans 98.6 0.00024 5.3E-09 80.7 35.1 372 202-612 2-413 (415)
47 KOG1991 Nuclear transport rece 98.5 0.0025 5.3E-08 75.6 41.7 426 151-630 292-796 (1010)
48 KOG1020 Sister chromatid cohes 98.5 0.0094 2E-07 73.6 50.5 604 108-826 766-1423(1692)
49 PF12348 CLASP_N: CLASP N term 98.5 3.9E-06 8.6E-11 87.3 16.6 183 449-638 19-210 (228)
50 KOG2274 Predicted importin 9 [ 98.5 0.006 1.3E-07 71.7 42.4 254 372-633 505-779 (1005)
51 KOG1240 Protein kinase contain 98.4 7.7E-06 1.7E-10 97.2 19.2 284 357-654 422-745 (1431)
52 PF12348 CLASP_N: CLASP N term 98.4 4.2E-06 9.1E-11 87.1 15.6 191 83-285 15-211 (228)
53 KOG1248 Uncharacterized conser 98.3 0.019 4.2E-07 69.7 47.3 390 350-779 510-933 (1176)
54 KOG2032 Uncharacterized conser 98.3 6.1E-05 1.3E-09 82.6 20.4 198 61-267 198-403 (533)
55 KOG1240 Protein kinase contain 98.3 4.2E-05 9.2E-10 91.2 20.3 143 406-552 584-729 (1431)
56 KOG4224 Armadillo repeat prote 98.2 0.00022 4.8E-09 75.2 22.2 400 156-636 84-495 (550)
57 KOG1058 Vesicle coat complex C 98.2 0.006 1.3E-07 70.2 35.0 348 207-637 107-466 (948)
58 KOG1020 Sister chromatid cohes 98.2 0.044 9.5E-07 68.0 45.6 471 108-634 812-1368(1692)
59 KOG1992 Nuclear export recepto 98.2 0.029 6.3E-07 65.6 44.1 482 146-639 223-798 (960)
60 COG5240 SEC21 Vesicle coat com 98.2 0.014 3.1E-07 65.2 35.7 256 348-632 294-553 (898)
61 KOG1060 Vesicle coat complex A 98.2 0.0056 1.2E-07 70.9 33.6 435 123-625 115-562 (968)
62 KOG1062 Vesicle coat complex A 98.2 0.0057 1.2E-07 71.1 33.4 191 411-636 305-497 (866)
63 cd00020 ARM Armadillo/beta-cat 98.1 2.4E-05 5.2E-10 71.9 10.2 110 75-185 8-119 (120)
64 cd00020 ARM Armadillo/beta-cat 98.0 4.2E-05 9E-10 70.3 10.4 110 117-226 8-118 (120)
65 KOG4224 Armadillo repeat prote 98.0 0.0017 3.7E-08 68.7 21.9 418 89-555 61-500 (550)
66 PF13513 HEAT_EZ: HEAT-like re 97.9 1.9E-05 4E-10 62.2 5.8 53 171-224 1-53 (55)
67 KOG2022 Nuclear transport rece 97.9 0.1 2.3E-06 61.6 40.6 340 264-638 480-871 (982)
68 KOG1059 Vesicle coat complex A 97.9 0.067 1.5E-06 61.8 34.6 256 199-483 144-422 (877)
69 COG5064 SRP1 Karyopherin (impo 97.9 0.00056 1.2E-08 71.6 16.9 294 58-386 91-397 (526)
70 KOG4653 Uncharacterized conser 97.9 0.0011 2.5E-08 77.1 20.8 184 371-559 740-929 (982)
71 KOG1062 Vesicle coat complex A 97.8 0.13 2.7E-06 60.4 36.9 255 263-542 306-575 (866)
72 KOG0392 SNF2 family DNA-depend 97.8 0.14 3.1E-06 62.5 37.6 131 500-638 798-929 (1549)
73 PF13513 HEAT_EZ: HEAT-like re 97.8 1.4E-05 3E-10 63.0 3.1 54 89-142 1-54 (55)
74 KOG1058 Vesicle coat complex C 97.8 0.015 3.2E-07 67.2 27.9 294 126-493 109-411 (948)
75 KOG2956 CLIP-associating prote 97.8 0.00071 1.5E-08 74.0 16.9 196 358-561 287-491 (516)
76 COG5096 Vesicle coat complex, 97.8 0.11 2.3E-06 62.0 35.9 431 126-638 29-486 (757)
77 KOG1820 Microtubule-associated 97.8 0.0024 5.2E-08 76.7 22.9 197 353-593 249-447 (815)
78 KOG1061 Vesicle coat complex A 97.8 0.0031 6.8E-08 73.2 22.8 365 160-638 89-457 (734)
79 KOG1059 Vesicle coat complex A 97.8 0.049 1.1E-06 62.8 31.6 190 74-290 144-338 (877)
80 KOG1967 DNA repair/transcripti 97.8 0.18 3.8E-06 60.1 37.5 157 474-633 863-1023(1030)
81 KOG2956 CLIP-associating prote 97.8 0.0028 6.1E-08 69.5 20.6 193 131-408 303-499 (516)
82 KOG4535 HEAT and armadillo rep 97.7 0.062 1.3E-06 59.2 29.7 101 532-634 497-603 (728)
83 KOG1820 Microtubule-associated 97.7 0.0012 2.5E-08 79.3 17.8 303 58-444 117-458 (815)
84 KOG2259 Uncharacterized conser 97.6 0.0092 2E-07 67.9 22.7 310 162-554 203-517 (823)
85 KOG2022 Nuclear transport rece 97.6 0.3 6.4E-06 58.0 36.5 113 171-302 481-598 (982)
86 KOG1967 DNA repair/transcripti 97.6 0.00043 9.4E-09 81.0 11.7 128 95-222 887-1018(1030)
87 PF05804 KAP: Kinesin-associat 97.6 0.061 1.3E-06 64.2 29.6 105 115-226 289-397 (708)
88 PF13646 HEAT_2: HEAT repeats; 97.5 0.00041 8.8E-09 60.2 8.6 85 118-223 1-87 (88)
89 COG5656 SXM1 Importin, protein 97.5 0.33 7.1E-06 56.5 35.8 427 87-628 311-795 (970)
90 COG5240 SEC21 Vesicle coat com 97.5 0.079 1.7E-06 59.6 26.5 144 43-189 191-335 (898)
91 KOG2259 Uncharacterized conser 97.4 0.022 4.9E-07 64.9 22.2 281 450-786 211-510 (823)
92 KOG0413 Uncharacterized conser 97.4 0.56 1.2E-05 56.0 39.5 125 519-654 968-1093(1529)
93 COG5098 Chromosome condensatio 97.4 0.07 1.5E-06 61.2 25.3 111 522-637 302-418 (1128)
94 PF12717 Cnd1: non-SMC mitotic 97.4 0.0012 2.6E-08 65.9 10.4 108 91-205 4-111 (178)
95 COG5064 SRP1 Karyopherin (impo 97.3 0.025 5.3E-07 59.7 19.4 313 110-465 69-397 (526)
96 TIGR02270 conserved hypothetic 97.3 0.12 2.6E-06 58.2 26.6 268 89-466 17-296 (410)
97 PF12717 Cnd1: non-SMC mitotic 97.3 0.0086 1.9E-07 59.7 15.7 161 450-630 1-175 (178)
98 PF03378 CAS_CSE1: CAS/CSE pro 97.3 0.084 1.8E-06 60.0 24.8 236 390-637 17-275 (435)
99 KOG2021 Nuclear mRNA export fa 97.2 0.7 1.5E-05 54.0 50.1 405 356-794 334-875 (980)
100 KOG4535 HEAT and armadillo rep 97.2 0.37 8E-06 53.4 27.3 278 372-652 269-581 (728)
101 PF03378 CAS_CSE1: CAS/CSE pro 97.2 0.078 1.7E-06 60.3 23.6 278 355-636 24-326 (435)
102 PF02985 HEAT: HEAT repeat; I 97.1 0.00065 1.4E-08 46.5 4.0 30 520-549 1-30 (31)
103 PF02985 HEAT: HEAT repeat; I 97.1 0.00067 1.5E-08 46.4 4.0 30 158-187 1-30 (31)
104 PF10274 ParcG: Parkin co-regu 97.1 0.0051 1.1E-07 60.4 11.6 116 478-593 38-168 (183)
105 COG1413 FOG: HEAT repeat [Ener 97.1 0.12 2.6E-06 57.0 24.0 173 74-307 43-228 (335)
106 PF12719 Cnd3: Nuclear condens 97.0 0.17 3.6E-06 55.0 23.7 136 348-485 55-204 (298)
107 KOG2032 Uncharacterized conser 97.0 0.044 9.5E-07 60.9 18.7 123 515-639 254-376 (533)
108 KOG1525 Sister chromatid cohes 97.0 0.47 1E-05 60.0 29.4 353 191-590 44-406 (1266)
109 KOG1061 Vesicle coat complex A 96.9 0.61 1.3E-05 54.8 27.7 428 117-634 87-527 (734)
110 KOG0946 ER-Golgi vesicle-tethe 96.9 1.5 3.2E-05 51.7 43.7 199 74-281 22-242 (970)
111 KOG2062 26S proteasome regulat 96.9 0.35 7.6E-06 56.3 24.7 159 410-588 529-689 (929)
112 PF13646 HEAT_2: HEAT repeats; 96.9 0.0063 1.4E-07 52.6 8.9 86 521-630 1-88 (88)
113 COG5218 YCG1 Chromosome conden 96.8 0.6 1.3E-05 53.0 25.5 152 108-275 41-194 (885)
114 KOG1078 Vesicle coat complex C 96.8 1.7 3.7E-05 51.2 36.5 90 118-219 66-155 (865)
115 KOG4653 Uncharacterized conser 96.8 0.075 1.6E-06 62.6 19.1 179 262-474 738-926 (982)
116 KOG1077 Vesicle coat complex A 96.8 1.7 3.6E-05 50.7 40.1 264 338-630 309-583 (938)
117 KOG2274 Predicted importin 9 [ 96.7 2.1 4.5E-05 51.4 47.1 281 513-833 443-763 (1005)
118 KOG0891 DNA-dependent protein 96.7 4.2 9.1E-05 54.9 38.5 126 506-633 635-762 (2341)
119 COG1413 FOG: HEAT repeat [Ener 96.7 0.3 6.5E-06 53.8 22.8 214 358-630 44-269 (335)
120 PF10274 ParcG: Parkin co-regu 96.7 0.011 2.5E-07 58.0 9.9 92 517-612 36-131 (183)
121 TIGR02270 conserved hypothetic 96.6 0.28 6E-06 55.4 21.9 117 401-546 88-205 (410)
122 PF05004 IFRD: Interferon-rela 96.6 0.95 2.1E-05 49.3 25.0 206 372-593 57-287 (309)
123 KOG1525 Sister chromatid cohes 96.5 4.3 9.4E-05 51.7 38.7 331 261-635 60-406 (1266)
124 PF05918 API5: Apoptosis inhib 96.4 0.87 1.9E-05 52.8 24.4 120 372-502 36-157 (556)
125 KOG1078 Vesicle coat complex C 96.4 2.5 5.4E-05 49.9 27.6 290 198-549 244-533 (865)
126 KOG0414 Chromosome condensatio 96.4 0.16 3.5E-06 61.9 18.6 159 113-296 916-1079(1251)
127 PF08506 Cse1: Cse1; InterPro 96.3 0.3 6.5E-06 54.4 19.3 124 532-655 224-358 (370)
128 PF05804 KAP: Kinesin-associat 96.1 4.7 0.0001 48.6 32.7 166 459-635 472-650 (708)
129 PF08167 RIX1: rRNA processing 96.1 0.15 3.3E-06 50.0 14.3 142 154-301 22-164 (165)
130 KOG4524 Uncharacterized conser 96.1 5.2 0.00011 48.6 34.5 81 516-596 800-883 (1014)
131 KOG1993 Nuclear transport rece 96.1 4.6 0.0001 47.9 34.8 360 115-488 487-886 (978)
132 PF14500 MMS19_N: Dos2-interac 96.0 0.56 1.2E-05 49.7 19.0 228 162-406 4-257 (262)
133 KOG0889 Histone acetyltransfer 95.9 0.82 1.8E-05 62.0 22.8 315 116-447 984-1327(3550)
134 KOG2025 Chromosome condensatio 95.9 0.44 9.5E-06 55.3 17.9 155 60-223 22-188 (892)
135 KOG0168 Putative ubiquitin fus 95.8 2.3 4.9E-05 50.6 23.4 86 552-638 547-633 (1051)
136 PF08506 Cse1: Cse1; InterPro 95.7 0.56 1.2E-05 52.3 18.3 228 265-543 110-370 (370)
137 KOG1993 Nuclear transport rece 95.7 6.5 0.00014 46.7 45.4 134 520-658 527-670 (978)
138 KOG0392 SNF2 family DNA-depend 95.7 0.03 6.5E-07 68.1 8.3 122 101-227 802-924 (1549)
139 PF05004 IFRD: Interferon-rela 95.6 1.5 3.3E-05 47.6 20.9 185 89-283 57-260 (309)
140 PF08167 RIX1: rRNA processing 95.6 0.24 5.1E-06 48.7 13.1 114 111-226 20-141 (165)
141 KOG0168 Putative ubiquitin fus 95.5 5.5 0.00012 47.6 25.4 182 113-311 168-354 (1051)
142 PF13251 DUF4042: Domain of un 95.5 0.2 4.4E-06 49.7 12.3 135 92-226 3-172 (182)
143 KOG0891 DNA-dependent protein 95.5 16 0.00034 49.8 34.7 450 121-593 570-1045(2341)
144 PF04826 Arm_2: Armadillo-like 95.5 0.7 1.5E-05 48.7 17.0 147 74-227 12-162 (254)
145 KOG2160 Armadillo/beta-catenin 95.5 1.4 3.1E-05 47.6 19.4 186 85-280 93-282 (342)
146 KOG2025 Chromosome condensatio 95.4 7.4 0.00016 45.7 39.7 108 153-275 81-188 (892)
147 PF13001 Ecm29: Proteasome sta 95.4 7.5 0.00016 45.4 30.7 188 395-593 234-447 (501)
148 KOG2149 Uncharacterized conser 95.3 0.18 4E-06 55.0 11.9 112 113-228 59-170 (393)
149 KOG0413 Uncharacterized conser 95.2 10 0.00022 45.9 31.5 144 75-224 472-641 (1529)
150 KOG0414 Chromosome condensatio 95.2 12 0.00026 46.6 45.9 124 63-190 299-432 (1251)
151 KOG2933 Uncharacterized conser 95.2 0.19 4.1E-06 52.9 11.2 170 116-303 74-259 (334)
152 COG5096 Vesicle coat complex, 95.1 11 0.00023 45.5 37.8 101 116-226 92-193 (757)
153 KOG2137 Protein kinase [Signal 94.9 1 2.2E-05 52.9 17.2 138 152-307 344-482 (700)
154 cd08050 TAF6 TATA Binding Prot 94.8 0.75 1.6E-05 50.8 15.5 88 500-587 239-338 (343)
155 PF05918 API5: Apoptosis inhib 94.8 5.8 0.00012 46.2 22.9 229 516-791 56-301 (556)
156 PF13251 DUF4042: Domain of un 94.8 0.39 8.5E-06 47.7 11.8 142 131-282 1-176 (182)
157 KOG2021 Nuclear mRNA export fa 94.7 12 0.00026 44.3 53.3 439 371-828 206-765 (980)
158 PF12719 Cnd3: Nuclear condens 94.7 7.6 0.00017 42.0 23.3 165 378-548 3-185 (298)
159 COG5116 RPN2 26S proteasome re 94.7 0.96 2.1E-05 51.2 15.6 168 37-226 462-648 (926)
160 cd08050 TAF6 TATA Binding Prot 94.7 0.098 2.1E-06 57.8 8.1 102 111-213 205-323 (343)
161 PF14868 DUF4487: Domain of un 94.6 8.7 0.00019 45.0 24.1 92 343-434 465-557 (559)
162 PF10521 DUF2454: Protein of u 94.6 3.7 7.9E-05 44.1 19.9 150 148-303 110-276 (282)
163 COG5656 SXM1 Importin, protein 94.6 13 0.00028 44.1 36.8 345 108-481 404-773 (970)
164 KOG2062 26S proteasome regulat 94.6 0.65 1.4E-05 54.2 14.3 95 116-224 554-649 (929)
165 PF11865 DUF3385: Domain of un 94.5 0.4 8.6E-06 46.8 11.2 152 393-589 2-157 (160)
166 KOG1243 Protein kinase [Genera 94.5 0.5 1.1E-05 55.1 13.3 196 346-550 318-517 (690)
167 PLN03076 ARF guanine nucleotid 94.5 24 0.00052 47.1 29.8 267 356-638 1181-1493(1780)
168 KOG1848 Uncharacterized conser 94.3 21 0.00045 45.3 27.0 293 246-591 837-1188(1610)
169 PF04118 Dopey_N: Dopey, N-ter 94.3 7 0.00015 42.3 20.9 131 490-630 109-250 (307)
170 KOG2549 Transcription initiati 94.3 2.8 6E-05 47.8 18.1 86 504-589 273-370 (576)
171 KOG4413 26S proteasome regulat 93.8 6.6 0.00014 41.9 18.6 287 341-636 65-379 (524)
172 KOG0567 HEAT repeat-containing 93.7 2.6 5.7E-05 43.7 15.3 193 399-633 67-279 (289)
173 PF14500 MMS19_N: Dos2-interac 93.6 11 0.00024 39.9 22.4 237 404-654 4-257 (262)
174 PF08064 UME: UME (NUC010) dom 93.6 0.58 1.3E-05 42.3 9.5 94 514-612 6-103 (107)
175 PF04826 Arm_2: Armadillo-like 93.5 0.67 1.5E-05 48.8 11.3 147 118-281 14-164 (254)
176 PF11865 DUF3385: Domain of un 93.5 1.1 2.3E-05 43.8 11.9 142 355-503 8-153 (160)
177 KOG2933 Uncharacterized conser 93.4 0.83 1.8E-05 48.3 11.4 117 511-637 121-237 (334)
178 PF13001 Ecm29: Proteasome sta 93.3 21 0.00044 41.8 24.4 162 379-544 301-484 (501)
179 KOG2137 Protein kinase [Signal 92.9 2.9 6.4E-05 49.1 15.9 132 514-653 344-477 (700)
180 PF10521 DUF2454: Protein of u 92.9 9.8 0.00021 40.9 19.4 60 169-228 87-148 (282)
181 PF08623 TIP120: TATA-binding 92.8 1.5 3.3E-05 42.9 11.6 124 513-639 3-152 (169)
182 PF12074 DUF3554: Domain of un 92.7 5.2 0.00011 44.2 17.6 86 358-447 23-112 (339)
183 KOG2149 Uncharacterized conser 92.7 1.1 2.4E-05 49.1 11.6 134 158-302 59-192 (393)
184 KOG1048 Neural adherens juncti 92.5 19 0.0004 43.1 21.9 110 118-228 235-349 (717)
185 KOG1949 Uncharacterized conser 92.0 27 0.00059 41.2 21.7 150 479-634 175-331 (1005)
186 COG5116 RPN2 26S proteasome re 91.9 0.77 1.7E-05 51.9 9.2 130 71-214 548-677 (926)
187 PF08623 TIP120: TATA-binding 91.5 0.44 9.5E-06 46.5 6.2 96 193-302 3-116 (169)
188 KOG4524 Uncharacterized conser 91.5 32 0.0007 42.1 22.4 116 93-213 566-688 (1014)
189 PF08161 NUC173: NUC173 domain 91.4 2.7 5.9E-05 42.5 12.0 165 377-546 19-197 (198)
190 PF07571 DUF1546: Protein of u 91.4 0.76 1.6E-05 40.3 7.0 59 529-587 16-76 (92)
191 PF08767 CRM1_C: CRM1 C termin 91.3 26 0.00056 38.3 21.7 167 243-428 60-243 (319)
192 KOG1822 Uncharacterized conser 91.2 3.8 8.3E-05 53.0 15.3 179 413-591 65-250 (2067)
193 smart00802 UME Domain in UVSB 90.8 1.2 2.5E-05 40.3 7.8 78 514-593 6-87 (107)
194 KOG1822 Uncharacterized conser 90.8 68 0.0015 42.3 31.4 259 259-569 884-1148(2067)
195 COG5218 YCG1 Chromosome conden 90.7 19 0.00042 41.5 18.5 108 514-628 86-193 (885)
196 KOG1243 Protein kinase [Genera 90.4 1.6 3.5E-05 51.0 10.4 189 437-638 329-519 (690)
197 KOG1851 Uncharacterized conser 90.4 67 0.0015 41.6 31.7 141 358-502 1527-1673(1710)
198 PF08064 UME: UME (NUC010) dom 90.1 3.8 8.1E-05 37.0 10.6 99 108-208 3-105 (107)
199 PF08767 CRM1_C: CRM1 C termin 89.9 34 0.00073 37.5 20.2 145 132-284 43-198 (319)
200 KOG2160 Armadillo/beta-catenin 89.5 3.1 6.8E-05 45.0 11.1 114 522-638 127-244 (342)
201 COG5095 TAF6 Transcription ini 89.5 12 0.00027 39.4 14.8 82 506-587 264-357 (450)
202 smart00802 UME Domain in UVSB 88.2 5.1 0.00011 36.1 9.9 99 108-208 3-105 (107)
203 PF10363 DUF2435: Protein of u 88.1 4.1 8.8E-05 35.7 9.0 72 366-440 12-83 (92)
204 PF01347 Vitellogenin_N: Lipop 87.1 25 0.00055 42.3 18.4 96 513-629 484-584 (618)
205 KOG1848 Uncharacterized conser 86.7 60 0.0013 41.5 20.4 116 521-636 999-1134(1610)
206 PF12054 DUF3535: Domain of un 85.9 27 0.00059 40.0 16.6 37 396-432 309-345 (441)
207 KOG3961 Uncharacterized conser 85.3 1.7 3.6E-05 43.5 5.5 87 479-565 115-204 (262)
208 KOG1810 Cell cycle-associated 85.2 37 0.00079 42.9 17.6 222 54-281 708-967 (1417)
209 KOG2973 Uncharacterized conser 84.8 60 0.0013 34.8 22.3 107 159-280 5-111 (353)
210 COG5098 Chromosome condensatio 84.8 26 0.00055 41.3 15.2 181 515-734 929-1111(1128)
211 PF10363 DUF2435: Protein of u 84.7 12 0.00027 32.7 10.2 85 520-616 4-88 (92)
212 KOG0803 Predicted E3 ubiquitin 84.4 75 0.0016 41.1 20.6 192 400-592 42-266 (1312)
213 KOG2549 Transcription initiati 84.4 23 0.00049 40.7 14.5 150 62-212 227-396 (576)
214 smart00638 LPD_N Lipoprotein N 84.3 33 0.00072 40.8 17.3 154 128-314 409-571 (574)
215 PF05536 Neurochondrin: Neuroc 84.3 95 0.0021 36.7 23.6 161 493-655 72-243 (543)
216 KOG3961 Uncharacterized conser 83.9 2.3 5E-05 42.5 5.8 92 519-611 114-205 (262)
217 KOG2213 Apoptosis inhibitor 5/ 83.8 76 0.0016 35.1 20.6 66 372-445 38-103 (460)
218 KOG2081 Nuclear transport regu 83.4 96 0.0021 36.0 25.0 127 512-650 333-474 (559)
219 cd03568 VHS_STAM VHS domain fa 83.3 14 0.0003 35.3 10.8 122 527-658 12-134 (144)
220 KOG1517 Guanine nucleotide bin 83.2 16 0.00035 44.9 13.3 128 91-225 573-729 (1387)
221 PF12530 DUF3730: Protein of u 83.1 43 0.00093 34.8 15.4 95 529-638 94-189 (234)
222 KOG4413 26S proteasome regulat 83.0 73 0.0016 34.3 27.7 73 155-227 80-156 (524)
223 PF01603 B56: Protein phosphat 82.4 66 0.0014 36.5 17.8 257 518-819 132-392 (409)
224 PF12054 DUF3535: Domain of un 82.3 71 0.0015 36.7 18.0 56 414-469 101-158 (441)
225 PF08569 Mo25: Mo25-like; Int 82.3 85 0.0018 34.6 25.2 202 396-612 73-297 (335)
226 PF12783 Sec7_N: Guanine nucle 81.8 14 0.00031 36.1 10.7 124 58-186 10-146 (168)
227 PF01347 Vitellogenin_N: Lipop 81.7 15 0.00032 44.2 13.1 108 531-653 447-571 (618)
228 smart00638 LPD_N Lipoprotein N 81.7 84 0.0018 37.4 19.3 120 516-650 394-524 (574)
229 KOG1293 Proteins containing ar 81.6 28 0.00061 40.8 14.0 108 116-227 423-532 (678)
230 PF12765 Cohesin_HEAT: HEAT re 81.5 2 4.3E-05 31.6 3.3 40 98-139 2-41 (42)
231 PF10350 DUF2428: Putative dea 81.2 14 0.00031 39.0 11.1 114 58-171 119-254 (255)
232 KOG0567 HEAT repeat-containing 81.1 62 0.0013 34.0 14.9 58 521-588 220-279 (289)
233 KOG1077 Vesicle coat complex A 81.0 1.3E+02 0.0028 35.9 36.8 163 466-638 360-554 (938)
234 PF08161 NUC173: NUC173 domain 80.9 15 0.00033 37.1 10.6 68 526-593 7-74 (198)
235 PF01603 B56: Protein phosphat 80.1 1.1E+02 0.0025 34.7 19.7 90 498-589 275-370 (409)
236 PF00790 VHS: VHS domain; Int 79.5 13 0.00028 35.3 9.2 121 522-652 12-136 (140)
237 KOG2122 Beta-catenin-binding p 79.2 1.4E+02 0.0031 38.7 19.4 216 413-636 364-603 (2195)
238 cd03569 VHS_Hrs_Vps27p VHS dom 78.1 22 0.00047 33.9 10.2 119 527-656 16-136 (142)
239 PF05536 Neurochondrin: Neuroc 78.0 1.5E+02 0.0033 35.0 21.4 183 452-638 72-265 (543)
240 KOG1517 Guanine nucleotide bin 77.4 13 0.00029 45.6 10.1 156 479-637 513-674 (1387)
241 COG5095 TAF6 Transcription ini 76.0 23 0.00049 37.5 10.2 147 392-548 194-359 (450)
242 KOG1851 Uncharacterized conser 75.0 59 0.0013 42.1 15.0 130 155-302 1524-1656(1710)
243 PF04078 Rcd1: Cell differenti 74.8 76 0.0016 33.4 13.7 235 3-277 2-259 (262)
244 KOG2973 Uncharacterized conser 74.1 19 0.00041 38.4 9.1 64 122-187 9-72 (353)
245 PLN03076 ARF guanine nucleotid 73.8 3.4E+02 0.0073 36.9 37.0 277 262-570 1194-1512(1780)
246 PF11864 DUF3384: Domain of un 73.6 1.8E+02 0.0039 33.7 27.7 128 496-633 195-329 (464)
247 PF00514 Arm: Armadillo/beta-c 73.3 6.5 0.00014 28.4 4.1 28 158-185 13-40 (41)
248 KOG0803 Predicted E3 ubiquitin 73.0 1.6E+02 0.0036 38.2 18.6 112 155-277 39-150 (1312)
249 PF12726 SEN1_N: SEN1 N termin 72.1 2.5E+02 0.0054 34.6 38.9 97 115-211 119-226 (727)
250 PF12830 Nipped-B_C: Sister ch 71.7 99 0.0022 30.9 13.7 75 478-556 8-82 (187)
251 PF08569 Mo25: Mo25-like; Int 71.5 1.7E+02 0.0036 32.3 18.9 204 63-284 65-287 (335)
252 PF12333 Ipi1_N: Rix1 complex 71.5 15 0.00032 32.8 6.8 60 511-570 3-63 (102)
253 cd00256 VATPase_H VATPase_H, r 70.6 2E+02 0.0043 32.8 24.7 246 517-788 141-426 (429)
254 PF12530 DUF3730: Protein of u 70.4 1.4E+02 0.003 31.0 20.8 176 401-589 2-185 (234)
255 PF08389 Xpo1: Exportin 1-like 69.9 35 0.00076 32.0 9.7 114 62-181 11-148 (148)
256 PF03224 V-ATPase_H_N: V-ATPas 69.1 1.7E+02 0.0037 31.7 16.0 171 400-575 106-297 (312)
257 PF08713 DNA_alkylation: DNA a 68.9 15 0.00033 37.2 7.4 78 115-199 119-196 (213)
258 PF14631 FancD2: Fanconi anaem 68.7 1.5E+02 0.0033 39.2 17.5 167 381-550 417-585 (1426)
259 PF00514 Arm: Armadillo/beta-c 67.8 10 0.00023 27.3 4.2 28 520-547 13-40 (41)
260 KOG1293 Proteins containing ar 66.0 2.8E+02 0.0062 32.9 30.4 143 449-593 389-537 (678)
261 KOG0889 Histone acetyltransfer 64.0 6.5E+02 0.014 36.3 40.7 113 75-188 1034-1157(3550)
262 PF12397 U3snoRNP10: U3 small 62.6 41 0.00088 30.9 8.2 83 557-646 3-87 (121)
263 PF01851 PC_rep: Proteasome/cy 62.4 8.5 0.00018 27.0 2.7 35 94-134 1-35 (35)
264 PF10350 DUF2428: Putative dea 62.4 1.3E+02 0.0027 31.8 12.8 158 377-534 66-255 (255)
265 cd06561 AlkD_like A new struct 62.1 60 0.0013 32.3 10.1 74 119-198 108-181 (197)
266 PF12333 Ipi1_N: Rix1 complex 61.8 35 0.00076 30.5 7.2 63 148-210 2-64 (102)
267 PF11919 DUF3437: Domain of un 61.4 9.9 0.00021 33.1 3.5 49 90-139 4-52 (90)
268 cd03568 VHS_STAM VHS domain fa 61.3 94 0.002 29.7 10.5 76 517-592 35-113 (144)
269 KOG2199 Signal transducing ada 59.4 92 0.002 34.4 10.9 128 522-659 15-143 (462)
270 cd03561 VHS VHS domain family; 58.9 1.5E+02 0.0032 27.7 11.4 103 528-639 13-117 (133)
271 KOG1837 Uncharacterized conser 58.5 5.6E+02 0.012 33.8 21.7 87 416-503 1520-1607(1621)
272 PF04388 Hamartin: Hamartin pr 58.3 1.5E+02 0.0032 36.0 13.9 88 356-447 69-157 (668)
273 PF12765 Cohesin_HEAT: HEAT re 58.0 12 0.00027 27.4 3.0 24 199-222 18-41 (42)
274 cd03569 VHS_Hrs_Vps27p VHS dom 56.6 1.2E+02 0.0027 28.8 10.4 76 517-592 39-117 (142)
275 PF12074 DUF3554: Domain of un 55.8 3.1E+02 0.0068 30.1 23.5 59 577-638 179-239 (339)
276 cd03572 ENTH_epsin_related ENT 55.4 1.6E+02 0.0035 27.2 10.5 87 134-226 20-117 (122)
277 smart00185 ARM Armadillo/beta- 55.3 16 0.00034 25.8 3.3 28 158-185 13-40 (41)
278 cd03561 VHS VHS domain family; 54.6 64 0.0014 30.2 8.1 77 517-593 35-116 (133)
279 PF03224 V-ATPase_H_N: V-ATPas 54.2 32 0.0007 37.4 6.9 118 515-634 55-179 (312)
280 PF12231 Rif1_N: Rap1-interact 54.2 3.5E+02 0.0077 30.2 28.9 190 373-588 149-351 (372)
281 PF12397 U3snoRNP10: U3 small 53.9 65 0.0014 29.5 7.9 73 353-430 2-75 (121)
282 smart00567 EZ_HEAT E-Z type HE 52.3 14 0.00031 24.5 2.4 29 533-571 1-29 (30)
283 PF11864 DUF3384: Domain of un 52.1 4.3E+02 0.0093 30.6 35.1 243 172-443 5-259 (464)
284 PF11698 V-ATPase_H_C: V-ATPas 51.6 34 0.00073 31.5 5.4 69 358-428 44-114 (119)
285 PF08146 BP28CT: BP28CT (NUC21 50.8 2.1E+02 0.0045 27.6 11.1 67 342-408 44-117 (153)
286 cd05394 RasGAP_RASA2 RASA2 (or 50.6 3.7E+02 0.0079 29.3 17.1 39 617-655 69-109 (313)
287 PF09324 DUF1981: Domain of un 50.2 62 0.0013 27.8 6.6 66 479-544 19-84 (86)
288 PF11841 DUF3361: Domain of un 50.1 2.2E+02 0.0048 27.7 10.9 75 117-191 59-136 (160)
289 cd03572 ENTH_epsin_related ENT 49.9 1.2E+02 0.0025 28.1 8.7 46 352-398 33-78 (122)
290 KOG3036 Protein involved in ce 49.7 2.9E+02 0.0063 28.9 12.0 94 92-185 95-196 (293)
291 smart00288 VHS Domain present 49.6 1.7E+02 0.0036 27.5 10.0 76 517-592 35-114 (133)
292 PF08389 Xpo1: Exportin 1-like 48.9 1.8E+02 0.0038 27.1 10.4 48 492-543 100-148 (148)
293 PF11701 UNC45-central: Myosin 48.7 1.4E+02 0.003 28.9 9.6 132 412-545 17-156 (157)
294 PF04510 DUF577: Family of unk 48.4 97 0.0021 30.4 8.2 98 537-634 60-164 (174)
295 COG5101 CRM1 Importin beta-rel 47.9 5.5E+02 0.012 30.6 38.0 135 165-311 489-638 (1053)
296 cd00197 VHS_ENTH_ANTH VHS, ENT 47.9 1.7E+02 0.0038 26.3 9.7 76 557-632 34-113 (115)
297 PF00790 VHS: VHS domain; Int 47.8 1.5E+02 0.0033 28.0 9.6 77 516-592 39-121 (140)
298 KOG1837 Uncharacterized conser 47.5 8.2E+02 0.018 32.4 28.0 97 457-557 1524-1620(1621)
299 cd03567 VHS_GGA VHS domain fam 47.3 2.1E+02 0.0045 27.2 10.2 75 518-592 37-119 (139)
300 PF11698 V-ATPase_H_C: V-ATPas 47.3 61 0.0013 29.8 6.4 67 158-226 44-113 (119)
301 KOG2122 Beta-catenin-binding p 47.2 8.2E+02 0.018 32.4 22.7 99 532-639 364-472 (2195)
302 KOG1949 Uncharacterized conser 47.0 6E+02 0.013 30.7 28.2 129 162-302 179-312 (1005)
303 cd00197 VHS_ENTH_ANTH VHS, ENT 46.7 1.3E+02 0.0028 27.2 8.6 71 516-586 34-112 (115)
304 PF11919 DUF3437: Domain of un 46.4 56 0.0012 28.5 5.7 58 534-592 4-61 (90)
305 smart00288 VHS Domain present 45.9 2E+02 0.0044 26.8 10.0 103 527-639 12-116 (133)
306 PF12783 Sec7_N: Guanine nucle 45.3 1.6E+02 0.0035 28.6 9.7 72 518-589 72-146 (168)
307 smart00185 ARM Armadillo/beta- 45.3 33 0.00072 24.0 3.7 28 520-547 13-40 (41)
308 PF07571 DUF1546: Protein of u 44.8 86 0.0019 27.4 6.8 46 168-214 17-62 (92)
309 PF12231 Rif1_N: Rap1-interact 43.2 5.2E+02 0.011 28.9 27.5 141 511-655 167-330 (372)
310 PF14225 MOR2-PAG1_C: Cell mor 42.8 4.4E+02 0.0095 28.0 22.0 189 386-591 50-256 (262)
311 PF02609 Exonuc_VII_S: Exonucl 40.4 60 0.0013 25.1 4.5 44 777-834 3-48 (53)
312 cd05128 RasGAP_GAP1_like The G 40.2 5.3E+02 0.011 28.2 14.0 67 724-791 156-228 (315)
313 PRK00977 exodeoxyribonuclease 38.8 56 0.0012 27.8 4.5 45 776-834 13-59 (80)
314 KOG3723 PH domain protein Melt 38.0 6.2E+02 0.013 29.6 13.4 28 271-298 182-209 (851)
315 PF14225 MOR2-PAG1_C: Cell mor 37.5 5.2E+02 0.011 27.4 18.6 183 355-551 62-257 (262)
316 cd00256 VATPase_H VATPase_H, r 37.5 6.8E+02 0.015 28.6 23.7 235 401-638 103-387 (429)
317 cd03565 VHS_Tom1 VHS domain fa 36.0 2.8E+02 0.006 26.3 9.3 120 527-655 13-136 (141)
318 KOG1566 Conserved protein Mo25 35.0 6.2E+02 0.014 27.5 14.6 163 62-226 67-284 (342)
319 PF14222 MOR2-PAG1_N: Cell mor 35.0 8.4E+02 0.018 29.0 18.8 203 379-588 13-248 (552)
320 PF10798 YmgB: Biofilm develop 34.9 91 0.002 25.0 4.8 47 780-829 5-53 (61)
321 KOG2011 Sister chromatid cohes 33.5 1.1E+03 0.024 30.0 19.5 238 373-651 170-418 (1048)
322 cd03565 VHS_Tom1 VHS domain fa 33.2 4.2E+02 0.0091 25.1 10.0 76 517-592 36-118 (141)
323 TIGR01280 xseB exodeoxyribonuc 32.8 85 0.0018 25.7 4.5 45 776-834 4-50 (67)
324 PF14631 FancD2: Fanconi anaem 32.2 1.4E+03 0.03 30.7 27.6 165 464-636 421-585 (1426)
325 KOG2347 Sec5 subunit of exocys 30.8 3.4E+02 0.0073 33.4 10.5 96 191-300 737-836 (934)
326 PF14911 MMS22L_C: S-phase gen 30.4 8.1E+02 0.018 27.4 18.1 94 557-654 253-348 (373)
327 PF09324 DUF1981: Domain of un 29.4 2.1E+02 0.0045 24.6 6.6 56 117-172 19-74 (86)
328 cd05136 RasGAP_DAB2IP The DAB2 29.3 7.7E+02 0.017 26.8 12.5 24 422-445 78-101 (309)
329 PF03542 Tuberin: Tuberin; In 29.2 8.2E+02 0.018 27.2 12.8 127 517-655 139-284 (356)
330 cd05134 RasGAP_RASA3 RASA3 (or 27.7 8.2E+02 0.018 26.6 15.8 40 616-655 68-109 (310)
331 KOG2005 26S proteasome regulat 27.3 1.2E+03 0.025 28.2 15.8 242 107-426 43-293 (878)
332 KOG1087 Cytosolic sorting prot 27.1 5.7E+02 0.012 29.6 11.3 123 524-656 10-135 (470)
333 PF04388 Hamartin: Hamartin pr 27.0 1.2E+03 0.026 28.4 14.8 82 447-528 78-161 (668)
334 PF07539 DRIM: Down-regulated 26.6 3.8E+02 0.0083 25.4 8.5 78 118-208 19-97 (141)
335 cd03562 CID CID (CTD-Interacti 26.2 2.3E+02 0.0049 25.5 6.7 69 515-583 33-102 (114)
336 PF04510 DUF577: Family of unk 25.6 3.1E+02 0.0068 27.0 7.6 58 68-130 40-98 (174)
337 PF11701 UNC45-central: Myosin 25.5 6.1E+02 0.013 24.4 10.5 116 450-571 18-139 (157)
338 PF12612 TFCD_C: Tubulin foldi 25.2 6.9E+02 0.015 24.9 12.6 123 519-652 7-136 (193)
339 PF04118 Dopey_N: Dopey, N-ter 25.1 9.1E+02 0.02 26.2 19.6 213 168-423 22-248 (307)
340 cd06561 AlkD_like A new struct 24.9 3.6E+02 0.0078 26.6 8.6 51 90-145 120-170 (197)
341 PF03130 HEAT_PBS: PBS lyase H 24.3 92 0.002 20.2 2.7 13 173-185 1-13 (27)
342 PRK14064 exodeoxyribonuclease 23.9 1.6E+02 0.0034 24.8 4.6 45 776-834 9-55 (75)
343 KOG1087 Cytosolic sorting prot 23.7 3.1E+02 0.0067 31.7 8.4 76 518-593 37-116 (470)
344 cd03567 VHS_GGA VHS domain fam 23.4 6.4E+02 0.014 23.9 10.9 104 527-638 13-120 (139)
345 PF01417 ENTH: ENTH domain; I 23.4 4E+02 0.0088 24.4 7.9 36 154-189 36-74 (125)
346 KOG1586 Protein required for f 22.9 1.6E+02 0.0036 30.5 5.4 53 745-813 71-126 (288)
347 PRK14067 exodeoxyribonuclease 22.9 1.6E+02 0.0034 25.1 4.5 45 776-834 10-56 (80)
348 PRK14068 exodeoxyribonuclease 22.5 1.9E+02 0.0041 24.3 4.8 44 776-833 9-54 (76)
349 PRK14066 exodeoxyribonuclease 22.4 1.6E+02 0.0036 24.6 4.5 45 776-834 7-53 (75)
350 PRK14063 exodeoxyribonuclease 22.3 1.6E+02 0.0035 24.7 4.5 45 776-834 8-54 (76)
351 KOG2038 CAATT-binding transcri 22.0 1.5E+03 0.033 27.8 18.2 239 515-803 230-496 (988)
352 PF06685 DUF1186: Protein of u 21.8 2.1E+02 0.0045 30.1 6.1 65 90-164 128-192 (249)
353 COG5234 CIN1 Beta-tubulin fold 21.4 4.9E+02 0.011 31.3 9.3 150 395-549 242-417 (993)
354 KOG4199 Uncharacterized conser 21.2 1.1E+03 0.024 25.9 17.3 147 401-548 285-444 (461)
355 PF07217 Het-C: Heterokaryon i 21.2 1.2E+03 0.026 27.7 12.3 24 192-215 420-443 (606)
356 KOG2213 Apoptosis inhibitor 5/ 20.4 6.8E+02 0.015 28.0 9.7 29 521-549 63-91 (460)
No 1
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.8e-120 Score=1049.75 Aligned_cols=798 Identities=39% Similarity=0.634 Sum_probs=673.9
Q ss_pred CcceeecCChhhHHHHHHHHHHHhccCCccccccccccCcccccCCcccccCCCCccchHHHHHHHhhhcCCchHHHHHH
Q 003195 1 MSVVYELGDASMKQNLVDALVTTLTGSGKRKRTVKLAEDSEVFQEGAIGEGLGGGKLSTYKELCNLANEMGQPDLIYKFM 80 (840)
Q Consensus 1 l~~vy~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~~~~t~~f~~g~~~~~~~~~~~styk~l~~lA~~~g~p~lv~~fm 80 (840)
||||||+||..+|++||++||+|||||+++ +++|++|||||++|+||++|+||++|||||||+||+|+|||||||+||
T Consensus 885 lglVYelgd~~~k~~LV~sL~~tl~~Gkr~--~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM 962 (1702)
T KOG0915|consen 885 LGLVYELGDSSLKKSLVDSLVNTLTGGKRK--AIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFM 962 (1702)
T ss_pred ceEEEecCCchhHHHHHHHHHHHHhccccc--cceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHH
Confidence 799999999999999999999999997544 689999999999999999999999999999999999999999999999
Q ss_pred HHhccccchhhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 003195 81 DLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFD 160 (840)
Q Consensus 81 ~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~ 160 (840)
+||+|++.||||+|||||||.|++++++.++||+++|||+||||+|||++.||+||.+||++|++|++.++++|+.+|++
T Consensus 963 ~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~ 1042 (1702)
T KOG0915|consen 963 QLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILD 1042 (1702)
T ss_pred HHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 003195 161 DLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTE 240 (840)
Q Consensus 161 ~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~ 240 (840)
+|+.++++++||||++||.|+.||++|++++++.+.++++|.++||+|||+|++||+||.++++.++++|+|.|++.++
T Consensus 1043 eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~- 1121 (1702)
T KOG0915|consen 1043 ELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNG- 1121 (1702)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998554
Q ss_pred cchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcc
Q 003195 241 ISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAG 320 (840)
Q Consensus 241 ~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~ 320 (840)
.+++++++.+||||+++|+.++.++||.+++.+++++++..|+.++||+|+++|.|+++.+..||+++||+..|+ ++
T Consensus 1122 -~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~--~~ 1198 (1702)
T KOG0915|consen 1122 -AKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL--IN 1198 (1702)
T ss_pred -ccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh--hh
Confidence 568899999999999999999999999999999999999999999999999999999999999999999999999 67
Q ss_pred cchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHH
Q 003195 321 IQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSML 400 (840)
Q Consensus 321 ~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~l 400 (840)
+..+++|.+|.+++++||||++|++|++|+|..++.+++|++.+++|.++|+++|++|+.++..|+.|+|.+++||.+++
T Consensus 1199 ~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKl 1278 (1702)
T KOG0915|consen 1199 IETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKL 1278 (1702)
T ss_pred hHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcC-ChhhhHHHHHHHHHHHhhchhhhhhhHhhH
Q 003195 401 LRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHID-DKNSQISCAILLKSYSSVASDVLSGYHAVI 479 (840)
Q Consensus 401 L~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~-d~~~r~~~~~~i~ai~~~~~~~f~~~~~~l 479 (840)
+++|++++ .|||+.||++++.|+|+++++.++++..++++.+...|.+ ++..+..++..+..|++++.+.|+.|.+.+
T Consensus 1279 l~al~~g~-~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~asaI 1357 (1702)
T KOG0915|consen 1279 LRALFPGA-KDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNYASAI 1357 (1702)
T ss_pred HHHHhhcc-ccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHHHH
Confidence 99999999 7999999999999999999999999999999999999874 344444444444449999999999999999
Q ss_pred hHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhh-cCCCHHHHHHHHHHHHHHHHHhCcchh-hh
Q 003195 480 VPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGI-ASSSWSSKRKSAKAICKLGEILGESLS-NY 557 (840)
Q Consensus 480 lP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L-~d~s~~vR~~Aa~~L~~La~~~~~~l~-~~ 557 (840)
+|++|.+||+++++..+.|.++|.++++++.++++.|.++|+..++... ++.+|.+|.++|+++..++........ |+
T Consensus 1358 LPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ 1437 (1702)
T KOG0915|consen 1358 LPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPV 1437 (1702)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHH
Confidence 9999999999999999999999999999999999999999887777765 455699999999999999987766554 67
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcC
Q 003195 558 HHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFR 637 (840)
Q Consensus 558 l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~ 637 (840)
+..+.+.+...+.||.|+||+.+++|+......|...... -.+.+.-+..+++.+++..|+..+..+.+....+.+
T Consensus 1438 ilkl~~~ll~~L~GRiwdGKe~iLKAl~~~~~a~~~~v~~----~~~si~~A~~~e~sr~~~~y~~~ala~~~~~lda~~ 1513 (1702)
T KOG0915|consen 1438 ILKLALSLLDTLNGRIWDGKEEILKALASAFEAGLADVKR----NMSSIEHAVMEEVSRREAKYKIMALAGAGLALDATK 1513 (1702)
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhHHHHHH----hchHHHHHHHHHHHHHHhHHHHHHHhhhHHHHhhhh
Confidence 8899999999999999999999999999998888765432 235888899999999999999999999999999998
Q ss_pred Ccc---hHHhHHHHHHhhccccccc-CCCCCCCCCCccchhhhccccCCchhHHHhhhhhhHHhhchhhHHHhhhhhHHH
Q 003195 638 DPK---FFNIIFPLLFEMCGSTALN-KSGQVPLPSDASKEESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQEKNLVQL 713 (840)
Q Consensus 638 ~~~---l~~~v~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 713 (840)
.+. +...++ +..-.+.+..+ +|..-...++..+++ . ++.+...+ ...+-.+ ++...
T Consensus 1514 ~e~~~~~~~~~~--L~K~~d~~~s~~~qt~~e~d~~~~ka~-----------~-~~~lkes~-~~~~~~~-----~~~~~ 1573 (1702)
T KOG0915|consen 1514 AERFEEVENAVW--LAKKSDDEVSKLIQTRNEADIDDNKAG-----------L-LNLLKESR-ESKLYTL-----NLTAL 1573 (1702)
T ss_pred hhhHHHHHHHHH--HHhhhhhhhcccccccchhhhhhcccc-----------H-HHHHHHHH-hhhhhhh-----hhhhh
Confidence 754 233333 33333333332 222111111111111 1 11111000 0000000 11111
Q ss_pred HHhhcCCCCChHHHHHHHHhhhcCCCCCCCccchhHHHHHHHhhhhhhhhhhcccchhhhhhHhhhHHHHHHHHHhhhcc
Q 003195 714 FTISLSPGFPWTELCSRLQKTLDDSAGTSPHAGISSLIQELFHTVSPKVVECISTVKIAQVHISASECLLEICKLFRQIS 793 (840)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~vr~~a~~~l~~i~~~~~~~~ 793 (840)
...| ....-.++-+.+...+.+. .......+....| .+.++...+++.++..+-...+..|..+.......--
T Consensus 1574 ~is~--~a~~~sr~~~~lLs~i~~~----v~~~~~~~~s~~f-~~~~~~l~~e~~~p~ar~~i~~~~c~~il~~~~~~~~ 1646 (1702)
T KOG0915|consen 1574 AISC--PAFSNSREPESLLSQITDY----VKSLVIADKSAQF-FFNELALSEEHTTPRARFVIAGKLCDNILEQLDELCA 1646 (1702)
T ss_pred hhhh--hhhhcchhhHHHHHHHHHH----HHHhHHHHHHHHH-HHHHHHHHhhccChhhhHHHHHHHHHHHHHHHHHhhc
Confidence 1111 0111111111111111110 0112233344444 4455566777777777778888888888887777666
Q ss_pred cccccccchhhhhHHHHHhhhhH---hHHHHHHHHHHHhccccccc
Q 003195 794 SVYSSNIGIKGELVHQCEMEKNM---EAKSLLKKCIDILENLEVKN 836 (840)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 836 (840)
|-+..+..++.|++.+.+-|+++ .+++++....+.+.+.++.+
T Consensus 1647 ~~~~~~a~~~leVvL~li~~s~~~~~~~~sll~~i~esla~~pel~ 1692 (1702)
T KOG0915|consen 1647 SPHKTEATDALEVVLRLIERSSRFGVDANSLLRLINESLAGEPELG 1692 (1702)
T ss_pred CCcchhHHHHHHHHHHHHHhcccccchhHHHHHHHHHhhhcCCCcc
Confidence 77788999999999999999999 99999999999998855543
No 2
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=2.2e-44 Score=403.09 Aligned_cols=539 Identities=14% Similarity=0.155 Sum_probs=422.7
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 003195 161 DLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTE 240 (840)
Q Consensus 161 ~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~ 240 (840)
.|++.|++++.+.|.+||.-|..=++.....--.+-.++.+.++++.++|.++.|+.-|.+-+.-+++ ....
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvs----Kvke---- 80 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVS----KVKE---- 80 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHh----hchH----
Confidence 58899999999999999988777666544433345667899999999999999999988766655532 2111
Q ss_pred cchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcc
Q 003195 241 ISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAG 320 (840)
Q Consensus 241 ~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~ 320 (840)
.....+++.+.+- +.+..+..|-.+--.|-.+... +.|+..
T Consensus 81 -~~le~~ve~L~~~-----~~s~keq~rdissi~Lktvi~n----l~P~~~----------------------------- 121 (1233)
T KOG1824|consen 81 -DQLETIVENLCSN-----MLSGKEQLRDISSIGLKTVIAN----LPPSSS----------------------------- 121 (1233)
T ss_pred -HHHHHHHHHHhhh-----hccchhhhccHHHHHHHHHHhc----CCCccc-----------------------------
Confidence 1123344555554 3444444444433333222221 122100
Q ss_pred cchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCC-chHhHHHHHHHHHHHHhccCccccHHH
Q 003195 321 IQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGL-NTRVGVASFISLLVQKIGMDIKPYTSM 399 (840)
Q Consensus 321 ~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~-~~r~~a~~~l~~L~~~~~~~~~p~~~~ 399 (840)
......+++.++|.+.+.+....+. ..|+.+++.+.++.+++|.-+.+|+..
T Consensus 122 ---------------------------~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~ 174 (1233)
T KOG1824|consen 122 ---------------------------SFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLS 174 (1233)
T ss_pred ---------------------------cccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHH
Confidence 0011223455666666665443232 368899999999999999999999999
Q ss_pred HHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcC--ChhhhHHHHHHHHHHHhhchhhhhhhHh
Q 003195 400 LLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHID--DKNSQISCAILLKSYSSVASDVLSGYHA 477 (840)
Q Consensus 400 lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~--d~~~r~~~~~~i~ai~~~~~~~f~~~~~ 477 (840)
++..++.++ ..+..+|||.++.++|++...++.+....+++++...+.. ....-++..++++++++.+|.+|..|.+
T Consensus 175 il~~l~~ql-~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~ 253 (1233)
T KOG1824|consen 175 ILKCLLPQL-QSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLD 253 (1233)
T ss_pred HHHHHhhcc-cChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccc
Confidence 999999999 5667999999999999999999999999999999988853 2345567889999999999999999999
Q ss_pred hHhHHHHHhh---cCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhc-------------------------
Q 003195 478 VIVPVIFISR---FEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIA------------------------- 529 (840)
Q Consensus 478 ~llP~l~~~~---~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~------------------------- 529 (840)
.++|++..++ ..+++++|+.+.+.++.+...++..+.+|.|+|++++.++++
T Consensus 254 ~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde 333 (1233)
T KOG1824|consen 254 KIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDE 333 (1233)
T ss_pred hhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccch
Confidence 9999998887 567889999999999999999999999999999999999982
Q ss_pred ---------CCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccc----
Q 003195 530 ---------SSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDIS---- 596 (840)
Q Consensus 530 ---------d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~---- 596 (840)
|.+|+|||+||+|+..++.+..+.+..+++.+-|.++.++++|++++|..++++|.++..+++....
T Consensus 334 ~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d 413 (1233)
T KOG1824|consen 334 QDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLAD 413 (1233)
T ss_pred hccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccC
Confidence 5689999999999999999999999999999999999999999999999999999999999874221
Q ss_pred -----cCCC--------CchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCC---cchHHhHHHHHHhhcccccccC
Q 003195 597 -----AEDP--------TTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD---PKFFNIIFPLLFEMCGSTALNK 660 (840)
Q Consensus 597 -----~~~~--------~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~---~~l~~~v~~i~~~l~~~~~~~~ 660 (840)
+... ..++.|++++.+++++++.+.|+.+|..|.+++.++|+ ++++.+|++|++.+.|++..
T Consensus 414 ~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSss-- 491 (1233)
T KOG1824|consen 414 NDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSS-- 491 (1233)
T ss_pred chhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccch--
Confidence 0111 25789999999999999999999999999999999998 57899999999999998665
Q ss_pred CCCCCCCCCccchhhhccccCCchhHHHhhhhhhHHhhchhhHHHhh-hhhHHHHHhhcCCCCChHHHHH----HHHhhh
Q 003195 661 SGQVPLPSDASKEESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQE-KNLVQLFTISLSPGFPWTELCS----RLQKTL 735 (840)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~----~~~~~l 735 (840)
|++++++ + .|+..++ ..|+|..|||+ ..|.|+++.| ++++|||+.. +.++++
T Consensus 492 ---s~~ki~~-----------L---~fl~~~L----~s~~p~~fhp~~~~Ls~~v~~a--V~d~fyKisaEAL~v~~~lv 548 (1233)
T KOG1824|consen 492 ---SNLKIDA-----------L---VFLYSAL----ISHPPEVFHPHLSALSPPVVAA--VGDPFYKISAEALLVCQQLV 548 (1233)
T ss_pred ---HHHHHHH-----------H---HHHHHHH----hcCChhhcccchhhhhhHHHHH--hcCchHhhhHHHHHHHHHHH
Confidence 4555555 3 4444433 57999999997 5999999999 7999997666 445555
Q ss_pred c--CCCCCCCccchhHHHHHHHhhhhhhh-hhhcccchhhhhhHhhhHHHHHHHHHhhhc--ccccccccchh
Q 003195 736 D--DSAGTSPHAGISSLIQELFHTVSPKV-VECISTVKIAQVHISASECLLEICKLFRQI--SSVYSSNIGIK 803 (840)
Q Consensus 736 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~~~~~ 803 (840)
| ||..++..+++.++|+++|.+++.++ .++.| ||||++||+|||+++++||++ -+..+.+++|.
T Consensus 549 kvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~D----qeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~ 617 (1233)
T KOG1824|consen 549 KVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSD----QEVKERAISCMGQIIANFGDFLGNELPRTLPILL 617 (1233)
T ss_pred HHhcccCCCccCCCChhHHHHHHHHHHHHhccccc----HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 5 44444456899999999999999999 55555 999999999999999999862 23333444443
No 3
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.9e-35 Score=316.11 Aligned_cols=612 Identities=15% Similarity=0.163 Sum_probs=434.8
Q ss_pred ceeecCChhhHHHHHHHHHHHhccCCccccccccccCcc----------cccCCcccccCCCCccchHHHHHHHhhhcCC
Q 003195 3 VVYELGDASMKQNLVDALVTTLTGSGKRKRTVKLAEDSE----------VFQEGAIGEGLGGGKLSTYKELCNLANEMGQ 72 (840)
Q Consensus 3 ~vy~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~~~~t~----------~f~~g~~~~~~~~~~~styk~l~~lA~~~g~ 72 (840)
|||-+.+.+.....++++-+-+.-..-|.+..+...+.. +.++..+=.++.|--+|| |.+--.--+|
T Consensus 50 L~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITT---I~s~~~~~~w 126 (885)
T KOG2023|consen 50 LIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITT---IASTGGLQHW 126 (885)
T ss_pred eeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHhhccCchHHHHhhhhheeee---eecccccccc
Confidence 577777777777777777666655443333333332221 333333444566778898 7777888899
Q ss_pred chHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhc-----hhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCC
Q 003195 73 PDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALK-----PHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP 147 (840)
Q Consensus 73 p~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~-----~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~ 147 (840)
|++++.++.+..+. +.+..+||+-||.+|+|++.+.++ ..+.-++|++++|+.+|+|.+|.-+..|.++++-..
T Consensus 127 pelLp~L~~~L~s~-d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 127 PELLPQLCELLDSP-DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hhHHHHHHHHhcCC-cccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC
Confidence 99999999999776 488899999999999999876665 357889999999999999999999999999998776
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCC--------------------------------------
Q 003195 148 KRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRK-------------------------------------- 189 (840)
Q Consensus 148 ~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~-------------------------------------- 189 (840)
...+..|++..++.++...+|.+..||+-.|.||.-|++.++
T Consensus 206 ~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 206 TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 678888999999999999999999999999999999997553
Q ss_pred ----chhhhHHHHHHHHHHHHHhc-----------------------cccHHHHH---HHHHH--------------HHH
Q 003195 190 ----FDQVGKHLRRIWTAAFRAMD-----------------------DIKETVRT---AGDKL--------------CRS 225 (840)
Q Consensus 190 ----~~~l~~~L~~l~~~l~~~ld-----------------------D~~~~VR~---aA~~~--------------~~~ 225 (840)
.+.+.|||++|+|.+++.|. |+|+...+ .+..- -.+
T Consensus 286 qpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~ 365 (885)
T KOG2023|consen 286 QPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDA 365 (885)
T ss_pred CcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccc
Confidence 23455666666666665551 22221111 00000 011
Q ss_pred HHHHHHHhhhcccc---ccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcc
Q 003195 226 VTSLTIRLCDVTLT---EISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLS 302 (840)
Q Consensus 226 l~~~~ir~~~~~~~---~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls 302 (840)
++.|.+|.|+++.- +...++++++.++|+|-+ .|.++.|-+|+..+-++|+||+.|.+.+.||+|.++|.|++.|+
T Consensus 366 ~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~-~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~ 444 (885)
T KOG2023|consen 366 FSDWNLRKCSAAALDVLANVFGDELLPILLPLLKE-HLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLD 444 (885)
T ss_pred cccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHH-HcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhc
Confidence 33355566544321 223456789999998864 47888999999999999999999999999999999999999999
Q ss_pred CchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhc-ChhhHhhHHHHHHHHHhccCCCchHh--HHH
Q 003195 303 SLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVV-DTESLDQLVPHLARLVRSGIGLNTRV--GVA 379 (840)
Q Consensus 303 ~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~-d~~~l~~lvp~L~~~lk~~~~~~~r~--~a~ 379 (840)
+-.|.+++..||...+|+- ++ .++.-+.+.|.+..+++.-.+-+.|+ +||
T Consensus 445 DKkplVRsITCWTLsRys~---------------------------wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAc 497 (885)
T KOG2023|consen 445 DKKPLVRSITCWTLSRYSK---------------------------WVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAAC 497 (885)
T ss_pred cCccceeeeeeeeHhhhhh---------------------------hHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHH
Confidence 9999999999999888752 00 00111235555555555555555554 899
Q ss_pred HHHHHHHHHhccCccccHHHHHHHHHHhHh--hcCcHHHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHhhc--CC
Q 003195 380 SFISLLVQKIGMDIKPYTSMLLRLLFPVVK--EEKSAAAKRAFASACASVLKYA-----TPSQAQKLIEETAALHI--DD 450 (840)
Q Consensus 380 ~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~--~d~~~~Vr~~a~~Alg~l~~~~-----~~~~~~~li~~l~~~~~--~d 450 (840)
..+..|....|..+.||++.|+..++..+. +.+|.-|. ..|+|.+...+ .+..++.++++++++|. .|
T Consensus 498 sAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlIL---YDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd 574 (885)
T KOG2023|consen 498 SAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLIL---YDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSD 574 (885)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehH---HHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCc
Confidence 999999999999999999999999999983 34554443 34555555443 34458889999999984 33
Q ss_pred hhh-hHHHHHHHHHHHhhchhhhhhhHhhHhHH----H-------HHhhcC-----CchHHHHHHHHHHHHhcCCChhhH
Q 003195 451 KNS-QISCAILLKSYSSVASDVLSGYHAVIVPV----I-------FISRFE-----DDKYVSDLFEELWEENTSGDRVTL 513 (840)
Q Consensus 451 ~~~-r~~~~~~i~ai~~~~~~~f~~~~~~llP~----l-------~~~~~d-----~d~~vr~~~~~i~~~~~~~~~~~i 513 (840)
++. ---.-.++.+++...+..|-||...+..- + ....+| +|++.--...++++.++.|.++.+
T Consensus 575 ~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~i 654 (885)
T KOG2023|consen 575 SDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHI 654 (885)
T ss_pred ccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhch
Confidence 322 12234566666666666655544332211 1 111222 233311112255555555554555
Q ss_pred HhhH--HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhc
Q 003195 514 QLYL--GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSC 591 (840)
Q Consensus 514 ~~yl--~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~ 591 (840)
.+.+ ..|+.++.+++.|.-.+||++|++.||++++.+.+++.|+...++|.|-..+....-++-.-++-|+|.++.+.
T Consensus 655 e~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~ 734 (885)
T KOG2023|consen 655 EPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKM 734 (885)
T ss_pred HHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHh
Confidence 4443 45899999999999999999999999999999999999999999999998888776666677888999999988
Q ss_pred ccccccCCCCchHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHcCCc---chHHhHHHHHHhhc
Q 003195 592 HKDISAEDPTTPFAIVDMVSSACRKK--IKKYREAAFSCLEQVIKAFRDP---KFFNIIFPLLFEMC 653 (840)
Q Consensus 592 ~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~R~~Al~~L~~l~~~~~~~---~l~~~v~~i~~~l~ 653 (840)
+..+. +++..++.-+..-++++ ...+-+...-++|++....|+. ++...+-|-...++
T Consensus 735 g~~~~----~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~ 797 (885)
T KOG2023|consen 735 GLKMK----QYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLR 797 (885)
T ss_pred chhhh----hHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhc
Confidence 76543 67777777666666553 3467777788899998888762 34555555555544
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-29 Score=293.62 Aligned_cols=570 Identities=15% Similarity=0.190 Sum_probs=395.1
Q ss_pred cccCcccccCCcccccC-CCCccchHHHHHHHhhhcCCchHHHHHHHHhc---cccchhhhhhHHhHHHHHHHHhhhhhc
Q 003195 36 LAEDSEVFQEGAIGEGL-GGGKLSTYKELCNLANEMGQPDLIYKFMDLAN---YQVSLNSKRGAAFGFSKIAKQAGDALK 111 (840)
Q Consensus 36 ~~~~t~~f~~g~~~~~~-~~~~~styk~l~~lA~~~g~p~lv~~fm~la~---~~~~w~sr~gA~~~l~~I~~~~~~~l~ 111 (840)
++.|-|...+..+.... +.....+-+.|+.+|..+|...+.+.+|+... .+++|..|++|.+++++|.+||++.|+
T Consensus 305 ~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~ 384 (1075)
T KOG2171|consen 305 EEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMI 384 (1075)
T ss_pred cccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHH
Confidence 34454555555554321 12356777899999999999999888888663 456799999999999999999999999
Q ss_pred hhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHH-HHHHHHHHHhhCCCC-hhHHHHHHHHHHHHHccCC
Q 003195 112 PHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHL-DLIFDDLLIQSGSRL-WRSREASCLSLADIIQGRK 189 (840)
Q Consensus 112 ~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~-~~Il~~Ll~~l~~~~-wrvR~aac~Al~~Ll~~~~ 189 (840)
+.|++++|.++.++.||+|+||.|++++.+++.+|.+..+.+++ ..+.+.|+..+.+.. .||..+||.|+.++.+.++
T Consensus 385 ~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~ 464 (1075)
T KOG2171|consen 385 GNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD 464 (1075)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999877666655 556668888887765 5999999999999999999
Q ss_pred chhhhHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccC----Cch
Q 003195 190 FDQVGKHLRRIWTAAF-RAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGIL----SKV 264 (840)
Q Consensus 190 ~~~l~~~L~~l~~~l~-~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~----s~~ 264 (840)
.+.+.|||+.|+.+.+ .+.+..++.||+.+..++.+++...- ....++.+.+||.|.+ -+. .+.
T Consensus 465 ~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~----------~~F~pY~d~~Mp~L~~-~L~n~~~~d~ 533 (1075)
T KOG2171|consen 465 KSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ----------EKFIPYFDRLMPLLKN-FLQNADDKDL 533 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----------hhhHhHHHHHHHHHHH-HHhCCCchhh
Confidence 9999999999999544 45567889999999888877765331 2355678888888764 122 244
Q ss_pred hHHHHHHHHHHHHHHHhhc-cccccchHHHHHHHHHhccC---chhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHH
Q 003195 265 DSISKASIGVVMKLVKGAG-IAIRPHLSDLVSCMLESLSS---LEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMW 340 (840)
Q Consensus 265 ~evr~~al~~L~~la~~~g-~~l~p~lp~Lv~~Ll~~ls~---~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~ 340 (840)
.++|..++++++-++...| +.|.|+..++|..++..-.+ ..... .|.+.
T Consensus 534 r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~---------------------------~sy~~ 586 (1075)
T KOG2171|consen 534 RELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPL---------------------------RSYMI 586 (1075)
T ss_pred HHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhcccc---------------------------HHHHH
Confidence 6888999999999999888 56999999999988876321 11111 12223
Q ss_pred HHHHHHHhhcChh---hHhhHHHHHHHHHhcc------------------------------C-----CCchHhHHHHHH
Q 003195 341 DTLDLCINVVDTE---SLDQLVPHLARLVRSG------------------------------I-----GLNTRVGVASFI 382 (840)
Q Consensus 341 eal~~~~~~~d~~---~l~~lvp~L~~~lk~~------------------------------~-----~~~~r~~a~~~l 382 (840)
.+...+++.++++ .++.++|.+....+-. + .+..|..||..|
T Consensus 587 ~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~L 666 (1075)
T KOG2171|consen 587 AFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEAL 666 (1075)
T ss_pred HHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHH
Confidence 3334444444432 2344555555543210 1 123466799999
Q ss_pred HHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCC------HHHHHHHHHHHHHhhc---CChhh
Q 003195 383 SLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT------PSQAQKLIEETAALHI---DDKNS 453 (840)
Q Consensus 383 ~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~------~~~~~~li~~l~~~~~---~d~~~ 453 (840)
+.++...+..|.||.++.++..+..+....+..||++++.+++.+++..- +..+..+...+...+. .++..
T Consensus 667 v~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e 746 (1075)
T KOG2171|consen 667 GEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPE 746 (1075)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCc
Confidence 99999999999999999999777777678899999999999999986532 1222222222222221 22323
Q ss_pred hHHHHHHHHHH---Hhhchh------hhhhhHhhHhHHH---HHhhcC---------CchHHHHHH-----------HHH
Q 003195 454 QISCAILLKSY---SSVASD------VLSGYHAVIVPVI---FISRFE---------DDKYVSDLF-----------EEL 501 (840)
Q Consensus 454 r~~~~~~i~ai---~~~~~~------~f~~~~~~llP~l---~~~~~d---------~d~~vr~~~-----------~~i 501 (840)
+.++...+.++ .+.+|+ .+......+.-.+ +..++| .+.+.++.. .++
T Consensus 747 ~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i 826 (1075)
T KOG2171|consen 747 TEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDI 826 (1075)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHH
Confidence 33333333333 334442 2222222222111 112221 111122211 122
Q ss_pred HHHhcCCChhhHHhhHHHHHHHHHhhhcCC-CHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHH
Q 003195 502 WEENTSGDRVTLQLYLGEIVSLICEGIASS-SWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDAL 580 (840)
Q Consensus 502 ~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~-s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~v 580 (840)
...+.....+.+-++..++.|.+...+.+. .|. |+-|.-++++++..+|+.-.+|...++|.+.+.+.+..|++|..+
T Consensus 827 ~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~-r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaA 905 (1075)
T KOG2171|consen 827 LAALAKALKGSFLPFFENFLPLIVKLLKSKKTVA-RQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAA 905 (1075)
T ss_pred HHHHHHHccccccHHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 222222334466778888888888887765 466 999999999999999999889999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCch----HHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHcCCcchHHhHHHH
Q 003195 581 LYAIGSISTSCHKDISAEDPTTP----FAIVDMVSSACR--KKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPL 648 (840)
Q Consensus 581 l~aL~~l~~~~~~~~~~~~~~~~----~~i~~~l~~~~~--~~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i 648 (840)
...+|-++...+... .+.. +.++..+..... +.+...+..|..++++++...+.....+.+.+.
T Consensus 906 sYGiGvlaq~~g~~y----~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~~ 975 (1075)
T KOG2171|consen 906 AYGMGVLAQFGGEDY----APVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRIPVDQVLPA 975 (1075)
T ss_pred HHHHHHHHHHcCcch----HHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHHHH
Confidence 999999998666432 1333 333333333222 346677888999999999988775334444443
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-29 Score=295.41 Aligned_cols=708 Identities=14% Similarity=0.144 Sum_probs=493.3
Q ss_pred eeecCChhhHHHHHHHHHHHhccCCcc-ccccccccCcccccCCcccccCCCCccchHHHHHHHhhh---cCCchHHHHH
Q 003195 4 VYELGDASMKQNLVDALVTTLTGSGKR-KRTVKLAEDSEVFQEGAIGEGLGGGKLSTYKELCNLANE---MGQPDLIYKF 79 (840)
Q Consensus 4 vy~~~~~~~~~~lv~~l~~~~~~~~~~-~~~~~~~~~t~~f~~g~~~~~~~~~~~styk~l~~lA~~---~g~p~lv~~f 79 (840)
+|..=++|.|..+-.+|+..+...... .+. +--.-+..+|+. -+||+++.-+
T Consensus 68 ~w~~l~~e~~~siks~lL~~~~~E~~~~vr~------------------------k~~dviAeia~~~l~e~WPell~~L 123 (1075)
T KOG2171|consen 68 HWSRLSAEVQQSIKSSLLEIIQSETEPSVRH------------------------KLADVIAEIARNDLPEKWPELLQFL 123 (1075)
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhccchHHHH------------------------HHHHHHHHHHHhccccchHHHHHHH
Confidence 455667889999999999988876541 110 001112222222 2689999888
Q ss_pred HHHhccccchhhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCC--hHHHHHHHHH
Q 003195 80 MDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP--KRTIDEHLDL 157 (840)
Q Consensus 80 m~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~--~~~i~~~~~~ 157 (840)
.+.+++. +-+.|+.|.+-|.++.+.-+..+.||++.+.+-+-.++.||+..||-++.+...+++... .+..-.++..
T Consensus 124 ~q~~~S~-~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~ 202 (1075)
T KOG2171|consen 124 FQSTKSP-NPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRD 202 (1075)
T ss_pred HHHhcCC-CcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 8877654 478899999999999999999999999999999999999999889999988888877543 2445557888
Q ss_pred HHHHHHHhhC----CCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHH
Q 003195 158 IFDDLLIQSG----SRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMD--DIKETVRTAGDKLCRSVTSLTI 231 (840)
Q Consensus 158 Il~~Ll~~l~----~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ld--D~~~~VR~aA~~~~~~l~~~~i 231 (840)
++|.++..+. +.+-..-..+-.+|.++++.. ++-+.+++.++++..+.... +..+++|..|...+-.+++...
T Consensus 203 llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~-pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap 281 (1075)
T KOG2171|consen 203 LLPSLLNVLQEVIQDGDDDAAKSALEALIELLESE-PKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAP 281 (1075)
T ss_pred HhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhH
Confidence 8888877653 333344455555666666543 35689999999999988875 5778999999998888876633
Q ss_pred HhhhccccccchHHhHHHhHHHHHHhc--ccCCc------------h-hHHHHHHHHHHHHHHHhhccccccchHHHHHH
Q 003195 232 RLCDVTLTEISDARQSMDIVLPFLLAE--GILSK------------V-DSISKASIGVVMKLVKGAGIAIRPHLSDLVSC 296 (840)
Q Consensus 232 r~~~~~~~~~~~~~~~l~~lLP~Ll~~--gL~s~------------~-~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~ 296 (840)
..+.. ...+...++|.++.. .+..+ . +.-...+.+++-.++-..|.. .-+|.+++.
T Consensus 282 ~~~k~-------~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~--~v~p~~~~~ 352 (1075)
T KOG2171|consen 282 AMCKK-------LALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK--QVLPPLFEA 352 (1075)
T ss_pred HHhhh-------chhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh--hehHHHHHH
Confidence 22221 112556666666641 11111 1 124557788888888877642 345666777
Q ss_pred HHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHh
Q 003195 297 MLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRV 376 (840)
Q Consensus 297 Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~ 376 (840)
+-..+.+.+..- .+.+...-|.+.|. |-+++- ..+++++|.++..++++ +..+|-
T Consensus 353 l~~~l~S~~w~~--------------------R~AaL~Als~i~EG---c~~~m~-~~l~~Il~~Vl~~l~Dp-hprVr~ 407 (1075)
T KOG2171|consen 353 LEAMLQSTEWKE--------------------RHAALLALSVIAEG---CSDVMI-GNLPKILPIVLNGLNDP-HPRVRY 407 (1075)
T ss_pred HHHHhcCCCHHH--------------------HHHHHHHHHHHHcc---cHHHHH-HHHHHHHHHHHhhcCCC-CHHHHH
Confidence 776666443211 11111111112222 222221 25788999999999987 888999
Q ss_pred HHHHHHHHHHHHhccCcccc-HHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHH-hhc-----C
Q 003195 377 GVASFISLLVQKIGMDIKPY-TSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAA-LHI-----D 449 (840)
Q Consensus 377 ~a~~~l~~L~~~~~~~~~p~-~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~-~~~-----~ 449 (840)
+||.+++++.+.++.++..+ ++.+++.++..+.+..|+.|...++.|+-.+.+.++.+.+..|++.+++ ++. +
T Consensus 408 AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~ 487 (1075)
T KOG2171|consen 408 AALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSS 487 (1075)
T ss_pred HHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999998755 5566667888885556889999999999999999999999999999988 331 3
Q ss_pred ChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcC-CchHHHHHHH---HHHHHhc-CCChhhHHhhHHHHHHHH
Q 003195 450 DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFE-DDKYVSDLFE---ELWEENT-SGDRVTLQLYLGEIVSLI 524 (840)
Q Consensus 450 d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d-~d~~vr~~~~---~i~~~~~-~~~~~~i~~yl~~Il~~l 524 (840)
.+.++..+..+|++++..++..|.+|+++++|.+....+. .+++.|.+.. +..+-+. ..++..+.++..++++++
T Consensus 488 ~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll 567 (1075)
T KOG2171|consen 488 KPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLL 567 (1075)
T ss_pred chhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Confidence 4667899999999999999999999999999998765543 3345444332 2222222 234467889999999999
Q ss_pred Hhh---hcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCC------------------Cch--------
Q 003195 525 CEG---IASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGR------------------LWE-------- 575 (840)
Q Consensus 525 ~~~---L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r------------------~~~-------- 575 (840)
... ..+.+...|.....+.+.+|+.+|++|.||++.++|.+.+..+.+ .|+
T Consensus 568 ~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e 647 (1075)
T KOG2171|consen 568 LELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKE 647 (1075)
T ss_pred HhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCce
Confidence 988 667788899999999999999999999999999999999887542 121
Q ss_pred ----------hHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHcCC--cchH
Q 003195 576 ----------GKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACR-KKIKKYREAAFSCLEQVIKAFRD--PKFF 642 (840)
Q Consensus 576 ----------~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~R~~Al~~L~~l~~~~~~--~~l~ 642 (840)
-|+..+.+|+.++...+..+. ||+.++++..+-.++ .-.++||.+|+.+++.+++...- ....
T Consensus 648 ~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~----pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p 723 (1075)
T KOG2171|consen 648 NIGIRTSVLDEKETACEALGEYAKELKEAFA----PYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGP 723 (1075)
T ss_pred eeeeeehhHHHHHHHHHHHHHHHHhhhhhhh----hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 199999999999998887664 899999884444433 34679999999999999976532 0111
Q ss_pred HhHHHHHHhhcccccccCCCCCCCCCCccchhhhccccCCchhHHHhhhhhhHHhhchhhHHHhhh-hhHHHHHhhcCCC
Q 003195 643 NIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQEK-NLVQLFTISLSPG 721 (840)
Q Consensus 643 ~~v~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~ 721 (840)
..+.++...++.. ....++.|.+..++..++++++.+|.++|+..++..+. .++..+..-+ .
T Consensus 724 ~~l~~l~~~~~~~---------------l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~--l 786 (1075)
T KOG2171|consen 724 EYLKQLWEAIRPA---------------LIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQL--L 786 (1075)
T ss_pred HHHHHHHHHHHHH---------------HHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHH--H
Confidence 1223333333322 22233555666888999999999999999988887743 3333332221 1
Q ss_pred CChH-------------------------------HHHHHHHhhhcCCCCCCCccchhHHHHHHHhhhhhhhhhhcccch
Q 003195 722 FPWT-------------------------------ELCSRLQKTLDDSAGTSPHAGISSLIQELFHTVSPKVVECISTVK 770 (840)
Q Consensus 722 ~~~~-------------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 770 (840)
...+ +++-++..++ .++++.|..-|..+.|.+...+..++
T Consensus 787 ~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~---------k~~k~~f~p~f~~~~p~iv~~l~~~~ 857 (1075)
T KOG2171|consen 787 QHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALA---------KALKGSFLPFFENFLPLIVKLLKSKK 857 (1075)
T ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHH---------HHccccccHHHHHHHHHHHHHHhcCC
Confidence 1111 1111222222 33444477788888888888884444
Q ss_pred hhhhhHhhhHHHHHHHHHh-hh-cccccccccch
Q 003195 771 IAQVHISASECLLEICKLF-RQ-ISSVYSSNIGI 802 (840)
Q Consensus 771 ~~~vr~~a~~~l~~i~~~~-~~-~~~~~~~~~~~ 802 (840)
--+ |.-|+.++++++.+. ++ .||...+++.+
T Consensus 858 ~~~-r~~av~~~~d~ie~~~~a~~~~~~~~~p~~ 890 (1075)
T KOG2171|consen 858 TVA-RQWAVCIFDDLIEGCGEASAKYKERFLPLV 890 (1075)
T ss_pred cHH-HHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 444 999999999999999 44 55654444443
No 6
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.3e-23 Score=228.93 Aligned_cols=490 Identities=13% Similarity=0.185 Sum_probs=356.6
Q ss_pred hhHHhHHHHHHHHhhhhhchhhhh-HHHHHHhhcCCCCHhHHHHHHHHHHHhccC----------------ChH------
Q 003195 93 RGAAFGFSKIAKQAGDALKPHLRL-LIPKLVRFQYDPDKNVQDAMAHIWKSLVAD----------------PKR------ 149 (840)
Q Consensus 93 ~gA~~~l~~I~~~~~~~l~~~l~~-lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d----------------~~~------ 149 (840)
.+|+-.|.+|+.---+.|++|+.+ +++.-+..++.+|+.|.--+..-|..+... +|.
T Consensus 235 ~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~ 314 (859)
T KOG1241|consen 235 VAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFAR 314 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHH
Confidence 344456777777777777777765 666666677777777776666667654431 100
Q ss_pred ------------------------------------------HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcc
Q 003195 150 ------------------------------------------TIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQG 187 (840)
Q Consensus 150 ------------------------------------------~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~ 187 (840)
.-+..++++++++-+++.+++||-|+++..||+.+++|
T Consensus 315 ~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~g 394 (859)
T KOG1241|consen 315 QALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEG 394 (859)
T ss_pred HHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcC
Confidence 11345678888888889999999999999999999999
Q ss_pred CCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHH
Q 003195 188 RKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSI 267 (840)
Q Consensus 188 ~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~ev 267 (840)
+....+.++.++.+|.+...|.|..--||.++.-.+..+.+.+... ......++.+++.++ +|+. +.+.+
T Consensus 395 p~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~--------~~n~~~l~~~l~~l~-~gL~-DePrv 464 (859)
T KOG1241|consen 395 PEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEA--------IINQELLQSKLSALL-EGLN-DEPRV 464 (859)
T ss_pred CchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhh--------cccHhhhhHHHHHHH-HHhh-hCchH
Confidence 9999999999999999999999999999987754444444333211 124567777888887 4776 56778
Q ss_pred HHHHHHHHHHHHHhhc---------cccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCc
Q 003195 268 SKASIGVVMKLVKGAG---------IAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSP 338 (840)
Q Consensus 268 r~~al~~L~~la~~~g---------~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~ 338 (840)
...+|.++..+++.+. ....||.+.|+..|+........ .-.+.|.++
T Consensus 465 a~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dg------------------nqsNLR~AA----- 521 (859)
T KOG1241|consen 465 ASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADG------------------NQSNLRSAA----- 521 (859)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhcccccc------------------chhhHHHHH-----
Confidence 8889999999997642 13457888888888865542110 012345433
Q ss_pred HHHHHHHHHhhcChhhH-------hhHHHHHHHHHhcc-CCCchHh-------HHHHHHHHHHHHhccCccccHHHHHHH
Q 003195 339 MWDTLDLCINVVDTESL-------DQLVPHLARLVRSG-IGLNTRV-------GVASFISLLVQKIGMDIKPYTSMLLRL 403 (840)
Q Consensus 339 l~eal~~~~~~~d~~~l-------~~lvp~L~~~lk~~-~~~~~r~-------~a~~~l~~L~~~~~~~~~p~~~~lL~~ 403 (840)
.+|+.+++++..+++- ..++-+|.+.+... .+..+|. --|.+|..+.++.+.++.++.+.+|..
T Consensus 522 -YeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~l 600 (859)
T KOG1241|consen 522 -YEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGL 600 (859)
T ss_pred -HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHH
Confidence 5677777777654432 22334444444421 1223332 346677778888999999999999999
Q ss_pred HHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHH
Q 003195 404 LFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVI 483 (840)
Q Consensus 404 Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l 483 (840)
++..+.+.++..|.+.+. .++++++...|..|..|.+.|.|++
T Consensus 601 flri~~s~~s~~v~e~a~-------------------------------------laV~tl~~~Lg~~F~kym~~f~pyL 643 (859)
T KOG1241|consen 601 FLRIFESKRSAVVHEEAF-------------------------------------LAVSTLAESLGKGFAKYMPAFKPYL 643 (859)
T ss_pred HHHHHcCCccccchHHHH-------------------------------------HHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 999994334444444433 3455566667889999999999999
Q ss_pred HHhhcC-CchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCC--CHHHHHHHHHHHHHHHHHhCcchhhhHHH
Q 003195 484 FISRFE-DDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASS--SWSSKRKSAKAICKLGEILGESLSNYHHV 560 (840)
Q Consensus 484 ~~~~~d-~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~--s~~vR~~Aa~~L~~La~~~~~~l~~~l~~ 560 (840)
..++.. .+-.|.....++..++.......+.+|.++++..+.++|+++ +.++|.....+.|++|..+|.+|.+|+..
T Consensus 644 ~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~ 723 (859)
T KOG1241|consen 644 LMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEM 723 (859)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 999854 455588877888888888777889999999999999999997 57899999999999999999999999999
Q ss_pred HHHHHHHhcCCCC-----------chhHHHHHHHHHHHHHhccccccc-CCCCchHHHHHHHHHHHhhc--CHHHHHHHH
Q 003195 561 LLESIMKEVPGRL-----------WEGKDALLYAIGSISTSCHKDISA-EDPTTPFAIVDMVSSACRKK--IKKYREAAF 626 (840)
Q Consensus 561 llp~L~~~l~~r~-----------~~~Ke~vl~aL~~l~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~~--~~~~R~~Al 626 (840)
++|.|.++-+-.. -..|+.+++++..++.+.+.+-.. ...||++.|+..+.+-..+. +..+-..|+
T Consensus 724 vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~ 803 (859)
T KOG1241|consen 724 VMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAAL 803 (859)
T ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHH
Confidence 9999998873221 234999999999999998842211 13489999999998855443 578899999
Q ss_pred HHHHHHHHHcCCcch-----HHhHHHHHHhhc
Q 003195 627 SCLEQVIKAFRDPKF-----FNIIFPLLFEMC 653 (840)
Q Consensus 627 ~~L~~l~~~~~~~~l-----~~~v~~i~~~l~ 653 (840)
..+|+|+..++++.+ .+.+..++...+
T Consensus 804 GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~ 835 (859)
T KOG1241|consen 804 GLIGDLATMFGKGVIKLFLDEDWIKDFLNEGR 835 (859)
T ss_pred HHHHHHHHHcccchhhhhcchHHHHHHHHHhh
Confidence 999999999987431 245556666555
No 7
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.8e-23 Score=229.26 Aligned_cols=429 Identities=14% Similarity=0.179 Sum_probs=322.5
Q ss_pred ccchHHHHHHHhhhcCCc--hHHHHHHHHhccccchhhhhhHHhHHHHHHHHh-hhhhchhhhhHHHHHHhhcCCCCHhH
Q 003195 56 KLSTYKELCNLANEMGQP--DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQA-GDALKPHLRLLIPKLVRFQYDPDKNV 132 (840)
Q Consensus 56 ~~styk~l~~lA~~~g~p--~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~-~~~l~~~l~~lvP~L~~~~~Dp~~~V 132 (840)
++++.-||..+|+.+||. ..|.+|+.-...+++|..|++|+++||+|++|. .+.+.|++++.+|.+...+.||+-.|
T Consensus 343 ~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~V 422 (859)
T KOG1241|consen 343 AKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWV 422 (859)
T ss_pred HHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhh
Confidence 688999999999999996 567778877777888999999999999999987 46888999999999999999999999
Q ss_pred HHHHHHHHHHhccCChH--HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccC-----C---chhhhHHHHHHHH
Q 003195 133 QDAMAHIWKSLVADPKR--TIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGR-----K---FDQVGKHLRRIWT 202 (840)
Q Consensus 133 R~a~~~iw~~Lv~d~~~--~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~-----~---~~~l~~~L~~l~~ 202 (840)
|+++.-.++.+.+.-+. .-..|...+++.++.++.| ++||-..+|+|+..|.++. + .+...++++.|+.
T Consensus 423 kdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~ 501 (859)
T KOG1241|consen 423 KDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIG 501 (859)
T ss_pred cchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHH
Confidence 99986666666643322 2366889999999999988 7999999999999999632 1 1235589999999
Q ss_pred HHHHHhc--c-ccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhc----------ccCC--chhHH
Q 003195 203 AAFRAMD--D-IKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAE----------GILS--KVDSI 267 (840)
Q Consensus 203 ~l~~~ld--D-~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~----------gL~s--~~~ev 267 (840)
.|+.+-| | .....|.+|.+++..+.+.+...+. +++..+.++++.+ ++.+ ...++
T Consensus 502 ~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy----------~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eL 571 (859)
T KOG1241|consen 502 SLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVY----------PMVQKLTLVILEKLDQTISSQILSLADRAQLNEL 571 (859)
T ss_pred HHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHH----------HHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHH
Confidence 9999876 3 4457899999999888654433222 2333344443321 1222 13578
Q ss_pred HHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHH
Q 003195 268 SKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCI 347 (840)
Q Consensus 268 r~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~ 347 (840)
+...|.+|+.+..+.++.++++.+.+|..|++.+.+..+.++ .++.+- |+..++
T Consensus 572 Qs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v------------~e~a~l--------------aV~tl~ 625 (859)
T KOG1241|consen 572 QSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVV------------HEEAFL--------------AVSTLA 625 (859)
T ss_pred HHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccc------------hHHHHH--------------HHHHHH
Confidence 889999999999999999999999999999999986332221 122221 222333
Q ss_pred hhcC---hhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHH
Q 003195 348 NVVD---TESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASAC 424 (840)
Q Consensus 348 ~~~d---~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Al 424 (840)
..++ ...++.|.|.|...+++..+-.+-..+..++++|+..++.+|.||++.++..|++.| + ++.+++..
T Consensus 626 ~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~L-s--s~~~hR~v---- 698 (859)
T KOG1241|consen 626 ESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCL-S--SPNLHRNV---- 698 (859)
T ss_pred HHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHc-c--Cccccccc----
Confidence 3332 234789999999999776666677789999999999999999999999999999999 3 33333322
Q ss_pred HHhhhcCCHHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhc---CC--------chH
Q 003195 425 ASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRF---ED--------DKY 493 (840)
Q Consensus 425 g~l~~~~~~~~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~---d~--------d~~ 493 (840)
+-.+..++|.|+-..|..|.+|++.++|++..+.+ |. ..+
T Consensus 699 -----------------------------KP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~ 749 (859)
T KOG1241|consen 699 -----------------------------KPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDE 749 (859)
T ss_pred -----------------------------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHH
Confidence 22334566777777788999999999998876541 11 123
Q ss_pred HHHHHHHHHHHhcCCCh-----hhHHhhHHHHHHHHHhhhcCC--CHHHHHHHHHHHHHHHHHhCcchhhh
Q 003195 494 VSDLFEELWEENTSGDR-----VTLQLYLGEIVSLICEGIASS--SWSSKRKSAKAICKLGEILGESLSNY 557 (840)
Q Consensus 494 vr~~~~~i~~~~~~~~~-----~~i~~yl~~Il~~l~~~L~d~--s~~vR~~Aa~~L~~La~~~~~~l~~~ 557 (840)
+|+.+.+.+..+..|.+ ..+++|++.|+.++-+.-.++ +..+-+.|+..||+|+..+|.++.++
T Consensus 750 LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~ 820 (859)
T KOG1241|consen 750 LREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKL 820 (859)
T ss_pred HHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhh
Confidence 67766666666555432 356799999999998876655 46788888999999999999876554
No 8
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.1e-22 Score=217.41 Aligned_cols=483 Identities=14% Similarity=0.118 Sum_probs=311.8
Q ss_pred chHHHHHHHhhhcCCchHHHHHHHHhcc---ccchhhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHH
Q 003195 58 STYKELCNLANEMGQPDLIYKFMDLANY---QVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQD 134 (840)
Q Consensus 58 styk~l~~lA~~~g~p~lv~~fm~la~~---~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~ 134 (840)
.+.+-|.-||+-+|+ +++..+|++.+. +..|.-|+++.+|||+|+|||.+.|-|||+.++|.|++++.|..|-||.
T Consensus 374 CSAAaLDVLanvf~~-elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRs 452 (885)
T KOG2023|consen 374 CSAAALDVLANVFGD-ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRS 452 (885)
T ss_pred ccHHHHHHHHHhhHH-HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceee
Confidence 344569999999998 566666666532 3569999999999999999999999999999999999999999999998
Q ss_pred HHH----HHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhcc
Q 003195 135 AMA----HIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDD 210 (840)
Q Consensus 135 a~~----~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD 210 (840)
.++ +--+.++.++ .++||.++|..++..+-|++.||+||||.|++.+-+... +++.|||..|++.+..++.-
T Consensus 453 ITCWTLsRys~wv~~~~---~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~-~eLVp~l~~IL~~l~~af~k 528 (885)
T KOG2023|consen 453 ITCWTLSRYSKWVVQDS---RDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAG-EELVPYLEYILDQLVFAFGK 528 (885)
T ss_pred eeeeeHhhhhhhHhcCC---hHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHH
Confidence 753 2223445554 678999999999999999999999999999999877665 57889999999998877753
Q ss_pred ccH-HHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhc--ccCCchhHHHHHHHHHHHHHHHhhccccc
Q 003195 211 IKE-TVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAE--GILSKVDSISKASIGVVMKLVKGAGIAIR 287 (840)
Q Consensus 211 ~~~-~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~--gL~s~~~evr~~al~~L~~la~~~g~~l~ 287 (840)
-+. .++ --..++.+++..+-..+ ...++++.++|.|+++ .+.++++++ -=.+++++.+++..|..|.
T Consensus 529 YQ~KNLl-ILYDAIgtlAdsvg~~L--------n~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~ 598 (885)
T KOG2023|consen 529 YQKKNLL-ILYDAIGTLADSVGHAL--------NKPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFL 598 (885)
T ss_pred Hhhccee-hHHHHHHHHHHHHHHhc--------CcHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhcccc
Confidence 211 110 11122233332221111 2346899999999984 344455554 1247999999999999999
Q ss_pred cchHHHHHHHHHhccCchhHhHHHHHHhhhhccc-chhhhHHHHHh--hccCCcHHHHHHHHHhhcChhhHhhHHHHHHH
Q 003195 288 PHLSDLVSCMLESLSSLEDQGLNYIELHAANAGI-QTEKLENLRIS--IAKGSPMWDTLDLCINVVDTESLDQLVPHLAR 364 (840)
Q Consensus 288 p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~-~~~~~d~~R~~--~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~ 364 (840)
||.+.+.......+... +...+....- +.+.-|.-... .---|.+.++++.-++.+-. -..++..+.+
T Consensus 599 P~~~~Vy~Rc~~il~~t-------~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva--~snl~~lll~ 669 (885)
T KOG2023|consen 599 PYAQPVYQRCFRILQKT-------LQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVA--QSNLLDLLLQ 669 (885)
T ss_pred ccCHHHHHHHHHHHHHH-------HHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhh--hccHHHHHHH
Confidence 99999888877666421 1111111000 00000100000 00001223333221111100 0235555666
Q ss_pred HHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 003195 365 LVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETA 444 (840)
Q Consensus 365 ~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~ 444 (840)
.+++. -..+|..|...+++|+..+...+.|+.+.+++.+...+ +..+..|...|+-|+|.+....+.+ +..++..++
T Consensus 670 C~~D~-~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl-~~~~isv~nNA~WAiGeia~k~g~~-~~~~v~~vl 746 (885)
T KOG2023|consen 670 CLQDE-VPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANL-NPENISVCNNAIWAIGEIALKMGLK-MKQYVSPVL 746 (885)
T ss_pred HhccC-ChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcC-ChhhchHHHHHHHHHHHHHHHhchh-hhhHHHHHH
Confidence 66665 34689999999999999999999999999999999888 6667889999999999998766554 234555544
Q ss_pred Hhhc-------CChhhhHHHHHHHHHHHhhchhhhhhhHhhHh-HHHHHhhc-CCchHHHHHHHHHHHHhcCCChhhHHh
Q 003195 445 ALHI-------DDKNSQISCAILLKSYSSVASDVLSGYHAVIV-PVIFISRF-EDDKYVSDLFEELWEENTSGDRVTLQL 515 (840)
Q Consensus 445 ~~~~-------~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~ll-P~l~~~~~-d~d~~vr~~~~~i~~~~~~~~~~~i~~ 515 (840)
..++ .+...-.-.+..||.++...|+.+.++.+.++ |-....++ +++++--..|.++...+.-. +.++..
T Consensus 747 ~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vN-p~~vv~ 825 (885)
T KOG2023|consen 747 EDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVN-PSGVVS 825 (885)
T ss_pred HHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeC-chhhhh
Confidence 4432 12233345677889999999999999999887 44443333 34444445566665443222 222222
Q ss_pred hHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCc-chhhhHHHHHHHHHHhc
Q 003195 516 YLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE-SLSNYHHVLLESIMKEV 569 (840)
Q Consensus 516 yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~-~l~~~l~~llp~L~~~l 569 (840)
-..-+...+ ..+.++..++|..-.+.|-.-....|+ ....+..++-|.+.+++
T Consensus 826 ~~~f~c~ai-Asw~np~~~l~~~f~kiL~g~k~qvg~~nW~~~~~qf~P~~~erl 879 (885)
T KOG2023|consen 826 SFIFICDAI-ASWSNPEDDLRDEFYKILQGFKNQVGKINWQRFSEQFPPPLKERL 879 (885)
T ss_pred hhHHHHHHH-hcccChHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCChhHHHHH
Confidence 222222222 223345556676666666555544443 23334444445554443
No 9
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.89 E-value=9.8e-19 Score=198.06 Aligned_cols=657 Identities=15% Similarity=0.151 Sum_probs=420.8
Q ss_pred chHHHHHHHhhhcCCchHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHH
Q 003195 58 STYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMA 137 (840)
Q Consensus 58 styk~l~~lA~~~g~p~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~ 137 (840)
++|..=.+|-.-|-.+|=-++||....-.+..+ ++.. ...+.-++. ++..|++.+.|.|+.|++-+.
T Consensus 2 a~~~~~i~LlekmtssDKDfRfMAtsDLm~eLq--kdsi--------~Ld~dSe~k---vv~~lLklL~D~ngEVQnlAV 68 (1233)
T KOG1824|consen 2 ASMQVGINLLEKMTSSDKDFRFMATSDLMTELQ--KDSI--------KLDDDSERK---VVKMLLKLLEDKNGEVQNLAV 68 (1233)
T ss_pred chhHHHHHHHHHccCCCcchhhhhHHHHHHHHH--hhhh--------hccccchhH---HHHHHHHHHhccCcHHHHHHH
Confidence 334433366667777888899998654433222 2211 122233333 455555557999999999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhcccc---HH
Q 003195 138 HIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIK---ET 214 (840)
Q Consensus 138 ~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~---~~ 214 (840)
.|.+-|++ ++-+.++..+.+.|..++-++.-..|.-+..+|-..+...++..-..+-+.+++.+..-|.+.. +.
T Consensus 69 KClg~lvs---Kvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~ 145 (1233)
T KOG1824|consen 69 KCLGPLVS---KVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQED 145 (1233)
T ss_pred HHHHHHHh---hchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhccc
Confidence 99999984 5567789999999999987777788888888877666544431111122233333332222110 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHH
Q 003195 215 VRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLV 294 (840)
Q Consensus 215 VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv 294 (840)
+-..--..+..++.++.|.-+- -+... ..++-+++- .+.+.-..||+.++.+|+.++..++..+ ...++
T Consensus 146 ~sai~~e~lDil~d~lsr~g~l---l~~fh----~~il~~l~~-ql~s~R~aVrKkai~~l~~la~~~~~~l---y~~li 214 (1233)
T KOG1824|consen 146 VSAIKCEVLDILADVLSRFGTL---LPNFH----LSILKCLLP-QLQSPRLAVRKKAITALGHLASSCNRDL---YVELI 214 (1233)
T ss_pred chhhHHHHHHHHHHHHHhhccc---CcchH----HHHHHHHhh-cccChHHHHHHHHHHHHHHHHHhcCHHH---HHHHH
Confidence 1111112344444444333210 00112 223334332 3666677899999999999999888753 34567
Q ss_pred HHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcC---hhhHhhHHHHHHHHHhcc--
Q 003195 295 SCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVD---TESLDQLVPHLARLVRSG-- 369 (840)
Q Consensus 295 ~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d---~~~l~~lvp~L~~~lk~~-- 369 (840)
..|+.-|+.. ......|.. ..+++.+++..+ ...++.++|.+.+..+..
T Consensus 215 ~~Ll~~L~~~-------------------~q~~~~rt~-------Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~ 268 (1233)
T KOG1824|consen 215 EHLLKGLSNR-------------------TQMSATRTY-------IQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEE 268 (1233)
T ss_pred HHHHhccCCC-------------------CchHHHHHH-------HHHHHHHHHHhcchhhcccchhhHHHHHHhccccc
Confidence 7888776632 111222332 234444444444 346788999998887432
Q ss_pred CCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH-----H
Q 003195 370 IGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEET-----A 444 (840)
Q Consensus 370 ~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l-----~ 444 (840)
.+..-|..|++++..+..+++.++.||.+.++..+++.+..|+|..-- ..++......+.. .
T Consensus 269 ~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd-------------~~eDed~~~~ed~eDde~~ 335 (1233)
T KOG1824|consen 269 DDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYD-------------TEEDEDAMFLEDEEDDEQD 335 (1233)
T ss_pred CcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCC-------------Cccchhhhhhhccccchhc
Confidence 134568899999999999999999999999999999999777764210 0011111111110 2
Q ss_pred HhhcCC----hhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhc-CCchHHHHHHHHHHHHh----------c---
Q 003195 445 ALHIDD----KNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRF-EDDKYVSDLFEELWEEN----------T--- 506 (840)
Q Consensus 445 ~~~~~d----~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~-d~d~~vr~~~~~i~~~~----------~--- 506 (840)
+.|.+| +.+|++++.++.++.....+.+-.+++.+-|.+. +++ +.+++|+.-..+++..+ .
T Consensus 336 deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI-~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~ 414 (1233)
T KOG1824|consen 336 DEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALI-SRFKEREENVKADVFHAYIALLKQTRPVIEVLADN 414 (1233)
T ss_pred cccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHH-HHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCc
Confidence 345544 3469999999999988888877788888888754 454 45556764322222111 1
Q ss_pred -----CCCh---hhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCC--chh
Q 003195 507 -----SGDR---VTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRL--WEG 576 (840)
Q Consensus 507 -----~~~~---~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~--~~~ 576 (840)
+|.+ ..++...+-|+..+.+.+.+.+.+.|+.++..|..++.++++.+.+|++.++|.++.+|.+++ .++
T Consensus 415 d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ 494 (1233)
T KOG1824|consen 415 DAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNL 494 (1233)
T ss_pred hhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHH
Confidence 1222 345666788899999999999999999999999999999999999999999999999999885 678
Q ss_pred HHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCc------c----hHHhHH
Q 003195 577 KDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP------K----FFNIIF 646 (840)
Q Consensus 577 Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~------~----l~~~v~ 646 (840)
|-.+|..+..++..++... +.|+.+.+.+.+.....++.|++-..|+..+++++++...- + +..++.
T Consensus 495 ki~~L~fl~~~L~s~~p~~---fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~ 571 (1233)
T KOG1824|consen 495 KIDALVFLYSALISHPPEV---FHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYD 571 (1233)
T ss_pred HHHHHHHHHHHHhcCChhh---cccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHH
Confidence 8888888888877776543 34899999999999999999999999999999999998541 1 233333
Q ss_pred HHHHhhcccccccCCCCCCCCCCccchhhhccccCCchhHHHhhhhhhHHhhchhhHHHh-hhhhHHHHHhhcCCCCChH
Q 003195 647 PLLFEMCGSTALNKSGQVPLPSDASKEESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQ-EKNLVQLFTISLSPGFPWT 725 (840)
Q Consensus 647 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ 725 (840)
-.++.+.. +..+||+.+ ..+.|++-.+..+| |...+ ..+.+|.++.-+..+-+.-
T Consensus 572 ~tl~rL~a----------------~d~DqeVke------raIscmgq~i~~fg--D~l~~eL~~~L~il~eRl~nEiTRl 627 (1233)
T KOG1824|consen 572 CTLQRLKA----------------TDSDQEVKE------RAISCMGQIIANFG--DFLGNELPRTLPILLERLGNEITRL 627 (1233)
T ss_pred HHHHHHhc----------------ccccHHHHH------HHHHHHHHHHHHHh--hhhhhhhHHHHHHHHHHHhchhHHH
Confidence 33443322 334567777 45788765544454 54444 4578888887763332222
Q ss_pred ----HHHHHHHhhhcCCCCCCCccchhHHHHHHHhhhhhhhhhhcccchhhhhhHhhhHHHHHHHHHhhh-ccccccccc
Q 003195 726 ----ELCSRLQKTLDDSAGTSPHAGISSLIQELFHTVSPKVVECISTVKIAQVHISASECLLEICKLFRQ-ISSVYSSNI 800 (840)
Q Consensus 726 ----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~vr~~a~~~l~~i~~~~~~-~~~~~~~~~ 800 (840)
.+|-++++.+ ..++.+...++++.+..-+.... .-.|....+++-.++.++++ .| -++.+
T Consensus 628 ~AvkAlt~Ia~S~l--------~i~l~~~l~~il~~l~~flrK~~-----r~lr~~~l~a~~~L~~~~~~~~~--~~~~e 692 (1233)
T KOG1824|consen 628 TAVKALTLIAMSPL--------DIDLSPVLTEILPELASFLRKNQ-----RALRLATLTALDKLVKNYSDSIP--AELLE 692 (1233)
T ss_pred HHHHHHHHHHhccc--------eeehhhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhcccc--HHHHH
Confidence 3333444432 24555666666666664443333 45888899999999999943 33 35666
Q ss_pred chhhhhHHHH-Hhhh--hHhHHHHHH
Q 003195 801 GIKGELVHQC-EMEK--NMEAKSLLK 823 (840)
Q Consensus 801 ~~~~~~~~~~-~~~~--~~~~~~~~~ 823 (840)
...+|+-.+. |+.+ .+.|-++|+
T Consensus 693 ~vL~el~~Lisesdlhvt~~a~~~L~ 718 (1233)
T KOG1824|consen 693 AVLVELPPLISESDLHVTQLAVAFLT 718 (1233)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 6667766654 3333 345555554
No 10
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.86 E-value=8.6e-18 Score=181.52 Aligned_cols=538 Identities=13% Similarity=0.163 Sum_probs=350.3
Q ss_pred ccc--CCcccccCCCC-ccchHHHHHH----HhhhcCCchHHHHHHHHhccccchh----hhhhHHh-HHHHHHHHhhhh
Q 003195 42 VFQ--EGAIGEGLGGG-KLSTYKELCN----LANEMGQPDLIYKFMDLANYQVSLN----SKRGAAF-GFSKIAKQAGDA 109 (840)
Q Consensus 42 ~f~--~g~~~~~~~~~-~~styk~l~~----lA~~~g~p~lv~~fm~la~~~~~w~----sr~gA~~-~l~~I~~~~~~~ 109 (840)
||+ .|++.+.|+.. .+++.++|.. +-+.+....=..-||+..=. .|+ +-..|+| +|-+|+.---+.
T Consensus 178 l~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvce--atq~~d~e~q~aafgCl~kim~LyY~f 255 (858)
T COG5215 178 LFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCE--ATQGNDEELQHAAFGCLNKIMMLYYKF 255 (858)
T ss_pred HHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeeh--hccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 677 78887655433 3455555433 33444555555667764411 133 2234555 468888777788
Q ss_pred hchhhhhHHHH-HHhhcCCCCHhHHHHHHHHHHHhccCChH---------------------------------------
Q 003195 110 LKPHLRLLIPK-LVRFQYDPDKNVQDAMAHIWKSLVADPKR--------------------------------------- 149 (840)
Q Consensus 110 l~~~l~~lvP~-L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~--------------------------------------- 149 (840)
|.+|+.+.+-. +-|+++.||..|.--+..-|.++....-+
T Consensus 256 m~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~e 335 (858)
T COG5215 256 MQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGE 335 (858)
T ss_pred HHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCC
Confidence 99998765544 45889999999999888899877653100
Q ss_pred -----------------------HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHH
Q 003195 150 -----------------------TIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFR 206 (840)
Q Consensus 150 -----------------------~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~ 206 (840)
.-+..+.+++.++-.++.+++|+-|+++..||+.++.|+....+.+|.++.+|.+..
T Consensus 336 d~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n 415 (858)
T COG5215 336 DYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIEN 415 (858)
T ss_pred CccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHH
Confidence 002233445555556677789999999999999999999999999999999999999
Q ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccc-
Q 003195 207 AMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIA- 285 (840)
Q Consensus 207 ~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~- 285 (840)
.|.|.---|.+.+.-.+..+++.+...+++. ..+.-.....+ .|+. +.+.+...++....+++....+.
T Consensus 416 ~m~D~~l~vk~ttAwc~g~iad~va~~i~p~--------~Hl~~~vsa~l-iGl~-D~p~~~~ncsw~~~nlv~h~a~a~ 485 (858)
T COG5215 416 EMSDSCLWVKSTTAWCFGAIADHVAMIISPC--------GHLVLEVSASL-IGLM-DCPFRSINCSWRKENLVDHIAKAV 485 (858)
T ss_pred hcccceeehhhHHHHHHHHHHHHHHHhcCcc--------ccccHHHHHHH-hhhh-ccchHHhhhHHHHHhHHHhhhhhh
Confidence 9999888888877666666665544344332 11111122222 2654 44455556677777777654433
Q ss_pred ------cccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhh--
Q 003195 286 ------IRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQ-- 357 (840)
Q Consensus 286 ------l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~-- 357 (840)
+.||.+.|+..|+.... .. ++ -.+.|.++ .++++.++.+..+.+.+-
T Consensus 486 ~~~~S~l~~fY~ai~~~Lv~~t~----~~--------~N-------e~n~R~s~------fsaLgtli~~~~d~V~~~~a 540 (858)
T COG5215 486 REVESFLAKFYLAILNALVKGTE----LA--------LN-------ESNLRVSL------FSALGTLILICPDAVSDILA 540 (858)
T ss_pred ccccchhHHHHHHHHHHHHHHHH----hh--------cc-------chhHHHHH------HHHHHHHHhhcchhHHHHHH
Confidence 45555555555554321 10 11 01234332 345555555543332211
Q ss_pred -----HHHHHHHHHhcc---CCCc-------hHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHH
Q 003195 358 -----LVPHLARLVRSG---IGLN-------TRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFAS 422 (840)
Q Consensus 358 -----lvp~L~~~lk~~---~~~~-------~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~ 422 (840)
...++.+.+.-. .... ....-+.+|..++.+.+.++.+-.++++.+++..+.+.+...+-.
T Consensus 541 ~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~---- 616 (858)
T COG5215 541 GFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFG---- 616 (858)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhh----
Confidence 222222222110 0011 112345666667778888888888888888888873221111111
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHH
Q 003195 423 ACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELW 502 (840)
Q Consensus 423 Alg~l~~~~~~~~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~ 502 (840)
-+-.+|++++...+++|..|.+.|+|++..+++..|..|.....++.
T Consensus 617 ---------------------------------dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglv 663 (858)
T COG5215 617 ---------------------------------DVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLV 663 (858)
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHH
Confidence 12356677777789999999999999999888777777887777888
Q ss_pred HHhcCCChhhHHhhHHHHHHHHHhhhcCC--CHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCc------
Q 003195 503 EENTSGDRVTLQLYLGEIVSLICEGIASS--SWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLW------ 574 (840)
Q Consensus 503 ~~~~~~~~~~i~~yl~~Il~~l~~~L~d~--s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~------ 574 (840)
.++....+..+.+|.+.++..+.++|+++ +.++|.+...+.|+++..+|..|.+|++.++-.+.++-.-+..
T Consensus 664 gdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~ 743 (858)
T COG5215 664 GDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYV 743 (858)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeH
Confidence 88877777889999999999999999986 5789999999999999999999999999999998887653321
Q ss_pred -----hhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHcCCcch-----H
Q 003195 575 -----EGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKK--IKKYREAAFSCLEQVIKAFRDPKF-----F 642 (840)
Q Consensus 575 -----~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~R~~Al~~L~~l~~~~~~~~l-----~ 642 (840)
+.++.+..||+.+..+.+..... -.||+..|...+-.-..|. +..--++|+..+|+++..+|..++ .
T Consensus 744 ~dy~~~~~~~v~~ayVgI~~~~~nr~~~-v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkgelk~~~~~ 822 (858)
T COG5215 744 DDYRKNAVQLVNCAYVGIGDSSKNRVRS-VLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKGELKFGLDE 822 (858)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHH-hhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCcchhhccch
Confidence 23788899999998877743211 1267777776665433332 344558999999999999998642 2
Q ss_pred HhHHHHHHhhcc
Q 003195 643 NIIFPLLFEMCG 654 (840)
Q Consensus 643 ~~v~~i~~~l~~ 654 (840)
+-|..++...+.
T Consensus 823 dWv~d~l~~~~~ 834 (858)
T COG5215 823 DWVKDFLYGMMK 834 (858)
T ss_pred HHHHHHHHHHHH
Confidence 344455555544
No 11
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.83 E-value=8.4e-18 Score=181.60 Aligned_cols=432 Identities=13% Similarity=0.120 Sum_probs=306.8
Q ss_pred ccchHHHHHHHhhhcCCc--hHHHHHHHHhccccchhhhhhHHhHHHHHHHHhh-hhhchhhhhHHHHHHhhcCCCCHhH
Q 003195 56 KLSTYKELCNLANEMGQP--DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAG-DALKPHLRLLIPKLVRFQYDPDKNV 132 (840)
Q Consensus 56 ~~styk~l~~lA~~~g~p--~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~-~~l~~~l~~lvP~L~~~~~Dp~~~V 132 (840)
++++..||...|+..||. ..|..|+.-...+..|..|++|++|||+|++|.. +.+.+++++.+|.+...+.||.--|
T Consensus 345 smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~v 424 (858)
T COG5215 345 SMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWV 424 (858)
T ss_pred hhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeeh
Confidence 799999999999999997 5688999988888889999999999999999875 4667899999999999999999999
Q ss_pred HHHHHHHHHHhccCChHHH--HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCC------chhhhHHHHHHHHHH
Q 003195 133 QDAMAHIWKSLVADPKRTI--DEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRK------FDQVGKHLRRIWTAA 204 (840)
Q Consensus 133 R~a~~~iw~~Lv~d~~~~i--~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~------~~~l~~~L~~l~~~l 204 (840)
...+.-|++++.+.-...+ ..|+.......+.++.| .+++-..+|+++-+|+.+.+ ..-+.++++.|+..|
T Consensus 425 k~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~L 503 (858)
T COG5215 425 KSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNAL 503 (858)
T ss_pred hhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHH
Confidence 9999888998876444433 55888888999999888 67888889999999987532 224678888999888
Q ss_pred HHHhc--cccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhc--------c--cC--C--chhHHH
Q 003195 205 FRAMD--DIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAE--------G--IL--S--KVDSIS 268 (840)
Q Consensus 205 ~~~ld--D~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~--------g--L~--s--~~~evr 268 (840)
...-+ +.....|.++.+++.++..++..... +++..+..+...+ | +. + ..+|++
T Consensus 504 v~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~----------~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elq 573 (858)
T COG5215 504 VKGTELALNESNLRVSLFSALGTLILICPDAVS----------DILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQ 573 (858)
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHhhcchhHH----------HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 87643 56677899998888887554422211 1111122221110 1 11 1 247888
Q ss_pred HHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHh
Q 003195 269 KASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCIN 348 (840)
Q Consensus 269 ~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~ 348 (840)
..-+..|..++.+.+++++|--++||..+++.+.+.+|..+- +|.. .+ .|.++..+++
T Consensus 574 SN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~------------~dV~----~a---Isal~~sl~e--- 631 (858)
T COG5215 574 SNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAF------------GDVY----TA---ISALSTSLEE--- 631 (858)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhh------------hHHH----HH---HHHHHHHHHH---
Confidence 888999999999999999999999999999999876554310 1111 00 0112222221
Q ss_pred hcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhh
Q 003195 349 VVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVL 428 (840)
Q Consensus 349 ~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~ 428 (840)
-.+...++++|.+.+.++. .+-++-..+..++++|+..++.+|.+|++.++..|.+.+ + ++..++..
T Consensus 632 -~Fe~y~~~fiPyl~~aln~-~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~l-s--s~~~~R~l-------- 698 (858)
T COG5215 632 -RFEQYASKFIPYLTRALNC-TDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCL-S--SEATHRDL-------- 698 (858)
T ss_pred -HHHHHHhhhhHHHHHHhcc-hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh-c--Chhhcccc--------
Confidence 1123467899999999843 465666688999999999999999999999999999999 3 33333332
Q ss_pred hcCCHHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhc-CC-------chH---HHHH
Q 003195 429 KYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRF-ED-------DKY---VSDL 497 (840)
Q Consensus 429 ~~~~~~~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~-d~-------d~~---vr~~ 497 (840)
+-++-.+++.|+...|..|.+|++.++-+...... ++ ++. ++..
T Consensus 699 -------------------------KPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~ 753 (858)
T COG5215 699 -------------------------KPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQL 753 (858)
T ss_pred -------------------------chHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHH
Confidence 22334566777777788999999988865443322 11 111 2222
Q ss_pred HHHHHHHhcCCC---hhhHHhhHHHHHHHHHhhhcCCC--HHHHHHHHHHHHHHHHHhCcc-hhhhH
Q 003195 498 FEELWEENTSGD---RVTLQLYLGEIVSLICEGIASSS--WSSKRKSAKAICKLGEILGES-LSNYH 558 (840)
Q Consensus 498 ~~~i~~~~~~~~---~~~i~~yl~~Il~~l~~~L~d~s--~~vR~~Aa~~L~~La~~~~~~-l~~~l 558 (840)
....+-.+..+. ...+.||+-.|...+-..-.|++ ...-|.|...||+++..+|+. +..++
T Consensus 754 v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkgelk~~~ 820 (858)
T COG5215 754 VNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKGELKFGL 820 (858)
T ss_pred HHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCcchhhcc
Confidence 222222222222 34678999999888877677764 455578889999999998864 44333
No 12
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=2.1e-16 Score=175.45 Aligned_cols=462 Identities=18% Similarity=0.128 Sum_probs=313.1
Q ss_pred ccchHHHHHHHhhhcCCchHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHH
Q 003195 56 KLSTYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDA 135 (840)
Q Consensus 56 ~~styk~l~~lA~~~g~p~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a 135 (840)
-+.+.....+..+.-.--.+..-|-+-.+++...+-|.+-..=.|....+. ..-+|....++.+|+.-..-|.+.||++
T Consensus 37 ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~-~~~d~~~~~~~~~~~~~~~tps~~~q~~ 115 (569)
T KOG1242|consen 37 MLEAGEAAINQHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHL-QIVDPRPISIIEILLEELDTPSKSVQRA 115 (569)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhc-cccCcchhHHHHHHHHhcCCCcHHHHHH
Confidence 344444444333332223455555555555444455555554444444433 3445667788889988899999999999
Q ss_pred HHHHHHHhccCChHHHHH-----------------------------------HH--HHHHHHHHHhhCCCC-hhHHHHH
Q 003195 136 MAHIWKSLVADPKRTIDE-----------------------------------HL--DLIFDDLLIQSGSRL-WRSREAS 177 (840)
Q Consensus 136 ~~~iw~~Lv~d~~~~i~~-----------------------------------~~--~~Il~~Ll~~l~~~~-wrvR~aa 177 (840)
...|...++...+..-.. ++ ..++..+...+.|+. .+.|+++
T Consensus 116 ~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~ 195 (569)
T KOG1242|consen 116 VSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAA 195 (569)
T ss_pred HHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHH
Confidence 988887776432110001 11 135555666666665 4667777
Q ss_pred HHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHh
Q 003195 178 CLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLA 257 (840)
Q Consensus 178 c~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~ 257 (840)
..|+.......+ ...+||+..++|.++....|..+.||.+|..+++.+... +++ ..+..++|.++.
T Consensus 196 ~~a~~~~~~~Lg-~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~----~~~---------~aVK~llpsll~ 261 (569)
T KOG1242|consen 196 LLAFEAAQGNLG-PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRC----LSA---------YAVKLLLPSLLG 261 (569)
T ss_pred HHHHHHHHHhcC-CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHh----cCc---------chhhHhhhhhHH
Confidence 666655555443 458899999999999999999999999999999888443 332 345667777774
Q ss_pred cccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccch--hhhHHH----HH
Q 003195 258 EGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQT--EKLENL----RI 331 (840)
Q Consensus 258 ~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~--~~~d~~----R~ 331 (840)
++....|.-+..+++.++.++......+.-++|+++|.+.+.|.+.+|++.+--.....+++... .+|... --
T Consensus 262 -~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld 340 (569)
T KOG1242|consen 262 -SLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLD 340 (569)
T ss_pred -HHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 56667899999999999999999999999999999999999999999998764443333332211 111110 00
Q ss_pred hhccCC-cHHHHHH-----HHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHh--ccCccccHHHHHHH
Q 003195 332 SIAKGS-PMWDTLD-----LCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKI--GMDIKPYTSMLLRL 403 (840)
Q Consensus 332 ~~~~~s-~l~eal~-----~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~--~~~~~p~~~~lL~~ 403 (840)
.....+ ...+++. .++.++++..+..++|.|.+.+... +...|..++.++..++.-. +..+.||++++++.
T Consensus 341 ~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eR-st~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~ 419 (569)
T KOG1242|consen 341 ALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAER-STSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPG 419 (569)
T ss_pred HhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhc-cchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhH
Confidence 011112 2233443 2467888888999999999988765 5677888999999998877 78899999999999
Q ss_pred HHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCC--hhhhHHHHHHHHHHHhhchhhhhhhHhhHhH
Q 003195 404 LFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDD--KNSQISCAILLKSYSSVASDVLSGYHAVIVP 481 (840)
Q Consensus 404 Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~d--~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP 481 (840)
+-..+ .|..++||..++.|+|.+.+..+.......++.+.+....+ ...|...++.+..+.+..+. .+...++|
T Consensus 420 lk~~~-~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v---~~~~~~~~ 495 (569)
T KOG1242|consen 420 LKENL-DDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGV---EKVEDILP 495 (569)
T ss_pred HHHHh-cCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccc---hHHHHHHH
Confidence 99999 67789999999999999999888777777777776665422 22456666777766655543 45566777
Q ss_pred HHHHhhc--CCchHHHHHHHHHHHHhcCC-ChhhHHhhHHHHHHHHHhhhcCCCHHHHHHH
Q 003195 482 VIFISRF--EDDKYVSDLFEELWEENTSG-DRVTLQLYLGEIVSLICEGIASSSWSSKRKS 539 (840)
Q Consensus 482 ~l~~~~~--d~d~~vr~~~~~i~~~~~~~-~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~A 539 (840)
-++.... ..++-++.-+..++. +.+. .+...++|+.++++.+++.+.|.+...|-.+
T Consensus 496 ~~~a~~~~~~~~~~~~dg~~~~~~-~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~ 555 (569)
T KOG1242|consen 496 EILANASSVLIDERIRDGVIWLFY-LLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTA 555 (569)
T ss_pred HHHHHHhhccchhhhccCeeehhh-ccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccch
Confidence 6665443 233345543322221 1221 2345689999999999999988877666544
No 13
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.4e-14 Score=161.06 Aligned_cols=436 Identities=13% Similarity=0.100 Sum_probs=294.8
Q ss_pred cCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHH
Q 003195 125 QYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAA 204 (840)
Q Consensus 125 ~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l 204 (840)
=.||++.||.-|...-...........-.++.++...-+.... ...+|++...-.+.+..+... ..+....++..+
T Consensus 26 g~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~--~~~~~~~~~v~~~~~a~~~~~--~d~~~~~~~~~~ 101 (569)
T KOG1242|consen 26 GEDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLH--NDNLRNNVVVLEGTLAFHLQI--VDPRPISIIEIL 101 (569)
T ss_pred CCCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccch--hHHHhhhhHHHHHHHHHhccc--cCcchhHHHHHH
Confidence 3899999999998877665533222333344444444444333 457888877655555544332 334445888889
Q ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhc-
Q 003195 205 FRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAG- 283 (840)
Q Consensus 205 ~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g- 283 (840)
+..++-+.++||++....+..+.... +.. .. ..+++.+.+ -+.+..-.-|..+...+..+.+..+
T Consensus 102 ~~~~~tps~~~q~~~~~~l~~~~~~~----~~~-----~~----~~~l~~l~~-ll~~~~~~~~~~aa~~~ag~v~g~~i 167 (569)
T KOG1242|consen 102 LEELDTPSKSVQRAVSTCLPPLVVLS----KGL-----SG----EYVLELLLE-LLTSTKIAERAGAAYGLAGLVNGLGI 167 (569)
T ss_pred HHhcCCCcHHHHHHHHHHhhhHHHHh----hcc-----CH----HHHHHHHHH-HhccccHHHHhhhhHHHHHHHcCcHH
Confidence 99999999999998766555543221 100 11 223333321 1223222223333333333332221
Q ss_pred cccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHH
Q 003195 284 IAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLA 363 (840)
Q Consensus 284 ~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~ 363 (840)
..+.++ .++..+.
T Consensus 168 ~~~~~~-------------------------------------------------------------------~~l~~l~ 180 (569)
T KOG1242|consen 168 ESLKEF-------------------------------------------------------------------GFLDNLS 180 (569)
T ss_pred hhhhhh-------------------------------------------------------------------hHHHHHH
Confidence 122222 1222222
Q ss_pred HHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 003195 364 RLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEET 443 (840)
Q Consensus 364 ~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l 443 (840)
+.+++...--.|.+++-....+...+|..+.||.-++++.++..+ .|+...||.++..|...+....+...+..+++++
T Consensus 181 ~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsl 259 (569)
T KOG1242|consen 181 KAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNF-GDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSL 259 (569)
T ss_pred HHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHh-hccchhhhHHHHHHHHHHHHhcCcchhhHhhhhh
Confidence 222222111123345555666778889999999999999999999 8999999999999999999999999999999998
Q ss_pred HHhhcCC-hhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHH
Q 003195 444 AALHIDD-KNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVS 522 (840)
Q Consensus 444 ~~~~~~d-~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~ 522 (840)
+..+.++ +..+.++.+.++.++..++..+..+++.++|.+-..+.|..++||..+.+....+...... +-+..++|
T Consensus 260 l~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN---~dI~~~ip 336 (569)
T KOG1242|consen 260 LGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN---PDIQKIIP 336 (569)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc---HHHHHHHH
Confidence 8877543 3456789999999999999999999999999998899999999999988877665543221 23556677
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHHHHhC-cch-hhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCC
Q 003195 523 LICEGIASSSWSSKRKSAKAICKLGEILG-ESL-SNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDP 600 (840)
Q Consensus 523 ~l~~~L~d~s~~vR~~Aa~~L~~La~~~~-~~l-~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~ 600 (840)
.+.++++|++..+.. |+..+..+.- ..+ .|-+.-++|.|.+++.+|+.+.|......+...+.-..+..+ -.
T Consensus 337 ~Lld~l~dp~~~~~e----~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~--la 410 (569)
T KOG1242|consen 337 TLLDALADPSCYTPE----CLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKD--LA 410 (569)
T ss_pred HHHHHhcCcccchHH----HHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHH--Hh
Confidence 788889999866655 4444433221 122 345889999999999999988887777777777665533221 24
Q ss_pred CchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCcchHHhHHHHHHhhccc
Q 003195 601 TTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGS 655 (840)
Q Consensus 601 ~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~~l~~~ 655 (840)
||++.+++.+-.-..+--+.+|..+.++|+.+.+.++...+.+..+.+....++.
T Consensus 411 pfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~ 465 (569)
T KOG1242|consen 411 PFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSE 465 (569)
T ss_pred hhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccc
Confidence 7999999999888877789999999999999999998876766666666655544
No 14
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.64 E-value=8.8e-12 Score=138.89 Aligned_cols=523 Identities=13% Similarity=0.136 Sum_probs=314.6
Q ss_pred chHHHHHHHhhhcCCchHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHH
Q 003195 58 STYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMA 137 (840)
Q Consensus 58 styk~l~~lA~~~g~p~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~ 137 (840)
+|.+-...+|+.+|-|.+.+-+-.++.+...|..|+--.-....|+.-.|-..-|||..++.-+=.+..|.+..||--+.
T Consensus 495 ttarafavvasalgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itA 574 (1172)
T KOG0213|consen 495 TTARAFAVVASALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITA 574 (1172)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHH
Confidence 45566778899999999887777777766669998866655556655445578899988888887788999999999988
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHH-HHHHHHHHHHhccccHHHH
Q 003195 138 HIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHL-RRIWTAAFRAMDDIKETVR 216 (840)
Q Consensus 138 ~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L-~~l~~~l~~~ldD~~~~VR 216 (840)
.+..+|......---+.|+.++.-|-+++...--..=.+-..|++-++--.. +.+..|+ .+++-.+.|-.+.+.+..+
T Consensus 575 lalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd-~eya~yyTrevmlil~rEf~sPDeemk 653 (1172)
T KOG0213|consen 575 LALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMD-AEYASYYTREVMLILIREFGSPDEEMK 653 (1172)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhcccccc-HHHHHHhHHHHHHHHHHhhCCChHHHH
Confidence 8888888653333345688888878777643211111222334444443222 3455444 4666667777777777666
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHh----cccCCchhHHHHHHHHHHHHHHHhhccccccchHH
Q 003195 217 TAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLA----EGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSD 292 (840)
Q Consensus 217 ~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~----~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~ 292 (840)
+...+..+ +.|+.. | .+..-.-..++|.++. +.+..+- ..-....++-..+|.+.|.. .
T Consensus 654 kivLKVv~-------qcc~t~-G--v~~~y~r~dilp~ff~~fw~rrmA~dr-r~ykqlv~ttv~ia~KvG~~------~ 716 (1172)
T KOG0213|consen 654 KIVLKVVK-------QCCATD-G--VEPAYIRFDILPEFFFSFWGRRMALDR-RNYKQLVDTTVEIAAKVGSD------P 716 (1172)
T ss_pred HHHHHHHH-------HHhccc-C--CCHHHHhhhhhHHHHhhhhhhhhhccc-cchhhHHHHHHHHHHHhCch------H
Confidence 54433332 223322 1 1223344567776664 1111111 11123456677888888874 3
Q ss_pred HHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhh-----HhhHHHHHHHHHh
Q 003195 293 LVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTES-----LDQLVPHLARLVR 367 (840)
Q Consensus 293 Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~-----l~~lvp~L~~~lk 367 (840)
+|..++.-+.+..++-.. . .++++++++..++... -+.++..++-+++
T Consensus 717 ~v~R~v~~lkde~e~yrk---m------------------------~~etv~ri~~~lg~~diderleE~lidgil~Afq 769 (1172)
T KOG0213|consen 717 IVSRVVLDLKDEPEQYRK---M------------------------VAETVSRIVGRLGAADIDERLEERLIDGILYAFQ 769 (1172)
T ss_pred HHHHHhhhhccccHHHHH---H------------------------HHHHHHHHHhccccccccHHHHHHHHHHHHHHHH
Confidence 455555444433222110 0 2445566655544322 2334555555554
Q ss_pred ccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH----
Q 003195 368 SGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEET---- 443 (840)
Q Consensus 368 ~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l---- 443 (840)
.+. .+-..-+..++..+..+|..++||+++|...++..| +.+++.||..++..++.+..+.+.-.-.+++.++
T Consensus 770 eqt--t~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rL-nnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvL 846 (1172)
T KOG0213|consen 770 EQT--TEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRL-NNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVL 846 (1172)
T ss_pred hcc--cchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHH
Confidence 331 111234567788889999999999999999999999 7899999999999998887654332222333332
Q ss_pred HHhhcCChhhhHHHHHHHHHH---Hhhch--hh---hhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhh--H
Q 003195 444 AALHIDDKNSQISCAILLKSY---SSVAS--DV---LSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVT--L 513 (840)
Q Consensus 444 ~~~~~~d~~~r~~~~~~i~ai---~~~~~--~~---f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~--i 513 (840)
.+-+. ++...+.+.+++++ ....+ .. .+..++.+.|.+ .. ..+.|.+.+.++...++-.++.- .
T Consensus 847 yEylg--eeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPIL-kn---rheKVqen~IdLvg~IadrgpE~v~a 920 (1172)
T KOG0213|consen 847 YEYLG--EEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPIL-KN---RHEKVQENCIDLVGTIADRGPEYVSA 920 (1172)
T ss_pred HHhcC--cccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhh-hh---hHHHHHHHHHHHHHHHHhcCcccCCH
Confidence 22222 23333444444444 33221 11 223334444432 22 33456666666655554433221 1
Q ss_pred HhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcc-h-hhhH---------------------------HHHHHH
Q 003195 514 QLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES-L-SNYH---------------------------HVLLES 564 (840)
Q Consensus 514 ~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~-l-~~~l---------------------------~~llp~ 564 (840)
+.++. |.=-+++.|.+..-.+|++|..++|-+++..|.+ + ...+ =+++|.
T Consensus 921 REWMR-IcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPa 999 (1172)
T KOG0213|consen 921 REWMR-ICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPA 999 (1172)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHH
Confidence 22221 1111233455666778888888888888777641 1 1000 035666
Q ss_pred HHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCc
Q 003195 565 IMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP 639 (840)
Q Consensus 565 L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~ 639 (840)
|.+.-.-.+-++...+|+++..+.+-.++.-. .|+-.+.+.+-..+-+++..+|+.|..++..++--+++.
T Consensus 1000 lmneYrtPe~nVQnGVLkalsf~Feyigemsk----dYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~ 1070 (1172)
T KOG0213|consen 1000 LMNEYRTPEANVQNGVLKALSFMFEYIGEMSK----DYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGT 1070 (1172)
T ss_pred HHhhccCchhHHHHhHHHHHHHHHHHHHHHhh----hHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCc
Confidence 66666666678899999999999887775322 688999999999999999999999999999988766663
No 15
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=2.1e-12 Score=154.09 Aligned_cols=466 Identities=14% Similarity=0.116 Sum_probs=302.5
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCC-chhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Q 003195 154 HLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRK-FDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIR 232 (840)
Q Consensus 154 ~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~-~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir 232 (840)
.+..|+..+...+.|+++..|+|+|-=+-.+++..+ .+...-.+++|.....+.|.|..|-++..|.+-+.-+-
T Consensus 815 ~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVY----- 889 (1702)
T KOG0915|consen 815 RETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVY----- 889 (1702)
T ss_pred cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEE-----
Confidence 456778888888999999999999977777777654 45677788899988888999999988887643221110
Q ss_pred hhhccccccchHHhHHHhHHHHHHhcccCCc---hhHHHHHHHHHHHHHHHh-hccccccchHHHHHHHHHhccCchhHh
Q 003195 233 LCDVTLTEISDARQSMDIVLPFLLAEGILSK---VDSISKASIGVVMKLVKG-AGIAIRPHLSDLVSCMLESLSSLEDQG 308 (840)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~---~~evr~~al~~L~~la~~-~g~~l~p~lp~Lv~~Ll~~ls~~ep~~ 308 (840)
+ .|.....+..++.++--|.+ |=.+. +.|..-|.=.+|+ ++ .|..+.-| ..|+.+.+
T Consensus 890 --e--lgd~~~k~~LV~sL~~tl~~-Gkr~~~~vs~eTelFq~G~Lg---~Tp~Gg~isTY-----KELc~LAS------ 950 (1702)
T KOG0915|consen 890 --E--LGDSSLKKSLVDSLVNTLTG-GKRKAIKVSEETELFQEGTLG---KTPDGGKISTY-----KELCNLAS------ 950 (1702)
T ss_pred --e--cCCchhHHHHHHHHHHHHhc-cccccceeccchhcccCCcCC---CCCCCCcchHH-----HHHHHHHh------
Confidence 0 01111233455555555542 21110 0111001000000 00 01111111 01111111
Q ss_pred HHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHH
Q 003195 309 LNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQK 388 (840)
Q Consensus 309 ~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~ 388 (840)
.++ -++++=++.++-+...-|++|.||+--++.++.+
T Consensus 951 ----------------------------------------dl~---qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~ 987 (1702)
T KOG0915|consen 951 ----------------------------------------DLG---QPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQ 987 (1702)
T ss_pred ----------------------------------------hcC---ChHHHHHHHHHhhhhchhhcccchhhchHHHHHH
Confidence 111 1344455555666666899999999999999999
Q ss_pred hccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc-----CChhhhHHHHHHHHH
Q 003195 389 IGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-----DDKNSQISCAILLKS 463 (840)
Q Consensus 389 ~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~-----~d~~~r~~~~~~i~a 463 (840)
.|..+.||+.+++|-|..+= .|++..|+.+++.-=+.++. -+...++.|..++.+.+. ..+++|.+++.++..
T Consensus 988 a~~kl~p~l~kLIPrLyRY~-yDP~~~Vq~aM~sIW~~Li~-D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~d 1065 (1702)
T KOG0915|consen 988 AGEKLEPYLKKLIPRLYRYQ-YDPDKKVQDAMTSIWNALIT-DSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALAD 1065 (1702)
T ss_pred HHHhhhhHHHHhhHHHhhhc-cCCcHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 99999999999999999997 79999999888766666552 233456666666555442 346789999999998
Q ss_pred HHhhch-hhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHH---hc----CC-ChhhHHhhHHHHHHHHHh-hhcCCCH
Q 003195 464 YSSVAS-DVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEE---NT----SG-DRVTLQLYLGEIVSLICE-GIASSSW 533 (840)
Q Consensus 464 i~~~~~-~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~---~~----~~-~~~~i~~yl~~Il~~l~~-~L~d~s~ 533 (840)
+.+..+ +.+...++.+.-.+|..|.|-.+.||+.....-+. ++ .. -+..-+..+..|+|.+.. ++-+.-.
T Consensus 1066 Ll~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~ 1145 (1702)
T KOG0915|consen 1066 LLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVN 1145 (1702)
T ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchH
Confidence 876432 45566666666667777777777799875544322 21 11 112235677778888765 4557788
Q ss_pred HHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchh-------------------------------------
Q 003195 534 SSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEG------------------------------------- 576 (840)
Q Consensus 534 ~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~------------------------------------- 576 (840)
++|+.+..++-+|++..|..+.||.+.+.|.|.+++..-+..+
T Consensus 1146 evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci 1225 (1702)
T KOG0915|consen 1146 EVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCI 1225 (1702)
T ss_pred HHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999887521111
Q ss_pred ---------------------------HHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 003195 577 ---------------------------KDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCL 629 (840)
Q Consensus 577 ---------------------------Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L 629 (840)
|-..-..+..++..++.. ..||...+++++..-.+++|..+|+....++
T Consensus 1226 ~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~e----mtP~sgKll~al~~g~~dRNesv~kafAsAm 1301 (1702)
T KOG0915|consen 1226 NYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSE----MTPYSGKLLRALFPGAKDRNESVRKAFASAM 1301 (1702)
T ss_pred HhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccc----cCcchhHHHHHHhhccccccHHHHHHHHHHH
Confidence 334444444444444433 3489999999999999999999999999999
Q ss_pred HHHHHHcCCcchHHhHHHHHHhhcccccccCCCCCCCCCCccchhhhccccCCchhHHHhhhhhhHHhhchhhHHHhh-h
Q 003195 630 EQVIKAFRDPKFFNIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQE-K 708 (840)
Q Consensus 630 ~~l~~~~~~~~l~~~v~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 708 (840)
|.+++.-..+.....+..++.....+..+. . +...+.+.+ + ..+.++++.++ .
T Consensus 1302 G~L~k~Ss~dq~qKLie~~l~~~l~k~es~-------~-------------siscatis~-I-----an~s~e~Lkn~as 1355 (1702)
T KOG0915|consen 1302 GYLAKFSSPDQMQKLIETLLADLLGKDESL-------K-------------SISCATISN-I-----ANYSQEMLKNYAS 1355 (1702)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHhccCCCc-------c-------------chhHHHHHH-H-----HHhhHHHHHhhHH
Confidence 999998766565555555555544331111 0 111122222 2 36788888884 5
Q ss_pred hhHHHHHhhc
Q 003195 709 NLVQLFTISL 718 (840)
Q Consensus 709 ~l~~~~~~~~ 718 (840)
.++|.+.-+.
T Consensus 1356 aILPLiFLa~ 1365 (1702)
T KOG0915|consen 1356 AILPLIFLAM 1365 (1702)
T ss_pred HHHHHHHHHH
Confidence 8888887664
No 16
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.60 E-value=2.3e-11 Score=153.95 Aligned_cols=537 Identities=14% Similarity=0.123 Sum_probs=316.8
Q ss_pred HHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhh-hhHHHHHHhhcC-CCCHhHHHHHHHHHHHhccCChHHHH
Q 003195 75 LIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHL-RLLIPKLVRFQY-DPDKNVQDAMAHIWKSLVADPKRTID 152 (840)
Q Consensus 75 lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l-~~lvP~L~~~~~-Dp~~~VR~a~~~iw~~Lv~d~~~~i~ 152 (840)
.++.++.+.++. +-..++-|+..+..++.+..+.-+.-+ ...||.|..... ++++.||+.+..+...|+.+.++..+
T Consensus 190 aVp~LV~LLsS~-d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~ 268 (2102)
T PLN03200 190 GVDILVKLLSSG-NSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQ 268 (2102)
T ss_pred CHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHH
Confidence 577777777654 245556677777777765433221111 246788887775 56789999998888888887544333
Q ss_pred HHHH-HHHHHHHHhhCCCChh---------HHHHHHHHHHHHHccCCchhhhHHHHHHH----------------HHHHH
Q 003195 153 EHLD-LIFDDLLIQSGSRLWR---------SREASCLSLADIIQGRKFDQVGKHLRRIW----------------TAAFR 206 (840)
Q Consensus 153 ~~~~-~Il~~Ll~~l~~~~wr---------vR~aac~Al~~Ll~~~~~~~l~~~L~~l~----------------~~l~~ 206 (840)
...+ -.++.|+..+.++++. .++.+.+||+++..+.. .+-++|.+++ +.++.
T Consensus 269 ~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~--~ll~~L~~ll~s~rd~~~~ada~gALayll~ 346 (2102)
T PLN03200 269 AIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMS--ALILYLGELSESPRSPAPIADTLGALAYALM 346 (2102)
T ss_pred HHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCch--hhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence 2221 1345555555444433 48999999999998752 3444443332 22333
Q ss_pred HhccccHHHHHH-HHHHHHHHHHHHHHhhhcccccc--chHHhHHHh---------------HHHHHHhccc-CCchhHH
Q 003195 207 AMDDIKETVRTA-GDKLCRSVTSLTIRLCDVTLTEI--SDARQSMDI---------------VLPFLLAEGI-LSKVDSI 267 (840)
Q Consensus 207 ~ldD~~~~VR~a-A~~~~~~l~~~~ir~~~~~~~~~--~~~~~~l~~---------------lLP~Ll~~gL-~s~~~ev 267 (840)
.+++..+..+.- ....++.|.+. |....... +...+.+.. ..+.|+ +| ...+.++
T Consensus 347 l~d~~~~~~~~i~~~~v~~~LV~L----lr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV--~LL~~~~~ev 420 (2102)
T PLN03200 347 VFDSSAESTRAFDPTVIEQILVKL----LKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLV--GLITMATADV 420 (2102)
T ss_pred hcCCchhhhhhccccccHHHHHHH----hCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhh--hhhccCCHHH
Confidence 344444433310 01223444333 33211100 000111111 122222 22 2356789
Q ss_pred HHHHHHHHHHHHHhhccccccch--HHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHH
Q 003195 268 SKASIGVVMKLVKGAGIAIRPHL--SDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDL 345 (840)
Q Consensus 268 r~~al~~L~~la~~~g~~l~p~l--p~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~ 345 (840)
|..++..|..++...... ...+ ...+|.|++.|.+..+....+..+...+... .-++.|..++
T Consensus 421 Q~~Av~aL~~L~~~~~e~-~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~---~ndenr~aIi----------- 485 (2102)
T PLN03200 421 QEELIRALSSLCCGKGGL-WEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTD---EVDESKWAIT----------- 485 (2102)
T ss_pred HHHHHHHHHHHhCCCHHH-HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc---CCHHHHHHHH-----------
Confidence 999999999988542211 1111 1247778887776554443332222211100 0011111000
Q ss_pred HHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHH--HHHHHHHHhHhhcCcHHHHHHHHHH
Q 003195 346 CINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTS--MLLRLLFPVVKEEKSAAAKRAFASA 423 (840)
Q Consensus 346 ~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~--~lL~~Ll~~l~~d~~~~Vr~~a~~A 423 (840)
+ ...+|.|+++++++ +...|..|+.+|+.++.. ....+.... ..++.++..+ .+.+..+++.++.+
T Consensus 486 -----e----aGaIP~LV~LL~s~-~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~A 553 (2102)
T PLN03200 486 -----A----AGGIPPLVQLLETG-SQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKT 553 (2102)
T ss_pred -----H----CCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHH
Confidence 0 23678888898865 567788999999998752 222333332 4677888888 56778999999999
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhchhh--hhhh--HhhHhHHHHHhhcCCchHHHHHH
Q 003195 424 CASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDV--LSGY--HAVIVPVIFISRFEDDKYVSDLF 498 (840)
Q Consensus 424 lg~l~~~~~~~~~~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~~--f~~~--~~~llP~l~~~~~d~d~~vr~~~ 498 (840)
+..++.....+.+ +++.+++. +++..+..+..+++.+....... +... ...-+|.+......+++.+++..
T Consensus 554 L~nLi~~~d~~~I----~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~A 629 (2102)
T PLN03200 554 LTKLVRTADAATI----SQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKA 629 (2102)
T ss_pred HHHHHhccchhHH----HHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHH
Confidence 9999887666544 44555564 45666776777777775533221 1110 12245555544455567777665
Q ss_pred HHHHHHhcCCChhhHH-hhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcc-hhhhH-HHHHHHHHHhcCCCCch
Q 003195 499 EELWEENTSGDRVTLQ-LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES-LSNYH-HVLLESIMKEVPGRLWE 575 (840)
Q Consensus 499 ~~i~~~~~~~~~~~i~-~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~-l~~~l-~~llp~L~~~l~~r~~~ 575 (840)
..+...+..+...... .....+++.+...+.+.+.++|+.|+.+|+.+.....+. ...+. ...+|.|++-++..+.+
T Consensus 630 a~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~ 709 (2102)
T PLN03200 630 ASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIE 709 (2102)
T ss_pred HHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChH
Confidence 5555555554332222 223456778888899999999999999999999743221 11122 34788899999888888
Q ss_pred hHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCcc-h------HHhHHHH
Q 003195 576 GKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPK-F------FNIIFPL 648 (840)
Q Consensus 576 ~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~~-l------~~~v~~i 648 (840)
.++.++.+|..++........ -.....++.+++.++..+.+.|+.|.++|..+++.++-++ + .-.+.++
T Consensus 710 v~e~Al~ALanLl~~~e~~~e----i~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l 785 (2102)
T PLN03200 710 VAEQAVCALANLLSDPEVAAE----ALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLAL 785 (2102)
T ss_pred HHHHHHHHHHHHHcCchHHHH----HHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHH
Confidence 999999999999875432110 0113456778888888899999999999999999887654 2 2355677
Q ss_pred HHhhccc
Q 003195 649 LFEMCGS 655 (840)
Q Consensus 649 ~~~l~~~ 655 (840)
+..+...
T Consensus 786 ~~~L~~~ 792 (2102)
T PLN03200 786 VDLLNST 792 (2102)
T ss_pred HHHHhcC
Confidence 7766544
No 17
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.60 E-value=2.5e-11 Score=153.53 Aligned_cols=652 Identities=13% Similarity=0.095 Sum_probs=365.5
Q ss_pred chHHHHHHHHhccccchhhhhhHHhHHHHHHHHhh-hhhchh---hhhHHHHHHhhcCCCC---HhHHHHHHHHHHHhcc
Q 003195 73 PDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAG-DALKPH---LRLLIPKLVRFQYDPD---KNVQDAMAHIWKSLVA 145 (840)
Q Consensus 73 p~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~-~~l~~~---l~~lvP~L~~~~~Dp~---~~VR~a~~~iw~~Lv~ 145 (840)
+.-++.++.+.++. .+..|+.|+.++..+..... +.-... -...+|.|...+.+++ ..|++.+..+...|..
T Consensus 98 ~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~ 176 (2102)
T PLN03200 98 GGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCG 176 (2102)
T ss_pred cCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhc
Confidence 35677788877654 48899999999999887542 211111 1457888888888874 3355556667777776
Q ss_pred CChHHHHHHHHH-HHHHHHHhhCCCChhHHHHHHHHHHHHHccCCc--hhhhHHHHHHHHHHHHHhcc-ccHHHHHHHHH
Q 003195 146 DPKRTIDEHLDL-IFDDLLIQSGSRLWRSREASCLSLADIIQGRKF--DQVGKHLRRIWTAAFRAMDD-IKETVRTAGDK 221 (840)
Q Consensus 146 d~~~~i~~~~~~-Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~--~~l~~~L~~l~~~l~~~ldD-~~~~VR~aA~~ 221 (840)
......+..++. .++.++..+.+.+..+++.||.++..++.+.+. ..+.. ...++.+.+++.+ ....||+.|..
T Consensus 177 ~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIe--aGaVP~LV~LL~sg~~~~VRE~AA~ 254 (2102)
T PLN03200 177 STDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLD--AGAVKQLLKLLGQGNEVSVRAEAAG 254 (2102)
T ss_pred CccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHH--CCCHHHHHHHHccCCChHHHHHHHH
Confidence 543222222222 666777777888899999999999888766431 12221 2557888888864 56689998877
Q ss_pred HHHHHHHHHHHhhhccccccchHHhHH-HhHHHHHHhcccCC---------chhHHHHHHHHHHHHHHHhhccccccchH
Q 003195 222 LCRSVTSLTIRLCDVTLTEISDARQSM-DIVLPFLLAEGILS---------KVDSISKASIGVVMKLVKGAGIAIRPHLS 291 (840)
Q Consensus 222 ~~~~l~~~~ir~~~~~~~~~~~~~~~l-~~lLP~Ll~~gL~s---------~~~evr~~al~~L~~la~~~g~~l~p~lp 291 (840)
++.+++.-. + .....++ ...+|.|++ -+.+ ....+++.+..+|++|+... +
T Consensus 255 AL~nLAs~s----~------e~r~~Iv~aGgIp~LI~-lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~--------~ 315 (2102)
T PLN03200 255 ALEALSSQS----K------EAKQAIADAGGIPALIN-ATVAPSKEFMQGEFAQALQENAMGALANICGGM--------S 315 (2102)
T ss_pred HHHHHhcCC----H------HHHHHHHHCCCHHHHHH-HHhCcchhhhccccchHHHHHHHHHHHHHhCCc--------h
Confidence 777664310 0 0011111 122444442 1221 23456899999999999543 3
Q ss_pred HHHHHHHHhccCchh--------HhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhh-Hh------
Q 003195 292 DLVSCMLESLSSLED--------QGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTES-LD------ 356 (840)
Q Consensus 292 ~Lv~~Ll~~ls~~ep--------~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~-l~------ 356 (840)
.++|.|-+.+.+.+. +++.|+.+..+..+ + ..+ .+..+....++-.+++.-+... .+
T Consensus 316 ~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~---~---~~~--~i~~~~v~~~LV~Llr~k~p~~vqe~V~eAL 387 (2102)
T PLN03200 316 ALILYLGELSESPRSPAPIADTLGALAYALMVFDSSA---E---STR--AFDPTVIEQILVKLLKPRDTKLVQERIIEAL 387 (2102)
T ss_pred hhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCch---h---hhh--hccccccHHHHHHHhCCCCCchhHHHHHHHH
Confidence 455555555443321 23344432222110 0 000 0111111112222222111110 11
Q ss_pred ----------------hHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHH-HHHHHHHHhHhhcCcHHHHHH
Q 003195 357 ----------------QLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTS-MLLRLLFPVVKEEKSAAAKRA 419 (840)
Q Consensus 357 ----------------~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~-~lL~~Ll~~l~~d~~~~Vr~~ 419 (840)
..++.|+.++... +...+..++..|..|+..-.....-..+ ..++.|+..| ...+..+++.
T Consensus 388 asl~gN~~l~~~L~~~daik~LV~LL~~~-~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL-~s~s~~iQ~~ 465 (2102)
T PLN03200 388 ASLYGNAYLSRKLNHAEAKKVLVGLITMA-TADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLL-GLSSEQQQEY 465 (2102)
T ss_pred HHhcCChHHHHHHHhccchhhhhhhhccC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHH
Confidence 1234445555443 4456677777777766332111111111 2477788888 5667899999
Q ss_pred HHHHHHHhhhcCCHHH--H--HHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhchhhhhhhHh--hHhHHHHHhhcCCch
Q 003195 420 FASACASVLKYATPSQ--A--QKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHA--VIVPVIFISRFEDDK 492 (840)
Q Consensus 420 a~~Alg~l~~~~~~~~--~--~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~~--~llP~l~~~~~d~d~ 492 (840)
++.+++.+.....+.. + ...++++.+++. +++..|..++.+++.++... +....... ..+|.++....+.+.
T Consensus 466 A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~-~qir~iV~~aGAIppLV~LL~sgd~ 544 (2102)
T PLN03200 466 AVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHS-EDIRACVESAGAVPALLWLLKNGGP 544 (2102)
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc-HHHHHHHHHCCCHHHHHHHHhCCCH
Confidence 9999999976443321 1 245788888885 56778888888999887643 22333221 245544444444444
Q ss_pred HHHHHHHHHHHHhc----------------CCChh-------------------h-HHhh--HHHHHHHHHhhhcCCCHH
Q 003195 493 YVSDLFEELWEENT----------------SGDRV-------------------T-LQLY--LGEIVSLICEGIASSSWS 534 (840)
Q Consensus 493 ~vr~~~~~i~~~~~----------------~~~~~-------------------~-i~~y--l~~Il~~l~~~L~d~s~~ 534 (840)
+++.........+. ...+. . .... ...-++.+.+.+.+.+.+
T Consensus 545 ~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ 624 (2102)
T PLN03200 545 KGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEE 624 (2102)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHH
Confidence 44433222211111 00000 0 0000 123466777888899999
Q ss_pred HHHHHHHHHHHHHHHhCcchhh-hHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCch-HHHHHHHHH
Q 003195 535 SKRKSAKAICKLGEILGESLSN-YHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTP-FAIVDMVSS 612 (840)
Q Consensus 535 vR~~Aa~~L~~La~~~~~~l~~-~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~-~~i~~~l~~ 612 (840)
+|+.|+.+|..++....+.... .....+|.|+.-+...+.++|..+..||+.+..+....... .++ ...++.+++
T Consensus 625 ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~---~~v~~GaV~pL~~ 701 (2102)
T PLN03200 625 TQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKV---SYAAEDAIKPLIK 701 (2102)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHH---HHHHcCCHHHHHH
Confidence 9999999999999754443222 23567888999998888899999999999999744322110 112 236777888
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHcCCc-ch--HHhHHHHHHhhcccccccCCCCCCCCCCccchhhhccccCCchhHHHh
Q 003195 613 ACRKKIKKYREAAFSCLEQVIKAFRDP-KF--FNIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADESVSAPLDKVLD 689 (840)
Q Consensus 613 ~~~~~~~~~R~~Al~~L~~l~~~~~~~-~l--~~~v~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (840)
.++.++..++..|+.+|..++..-.+. ++ ...+.+++..+++..... .+.. +..+.
T Consensus 702 LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~------------------k~~A---a~AL~ 760 (2102)
T PLN03200 702 LAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEG------------------KRNA---ARALA 760 (2102)
T ss_pred HHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHH------------------HHHH---HHHHH
Confidence 888889999999999999999754332 11 345667777776552111 1100 12222
Q ss_pred hhhhhHHhhchhhHH-Hh--hhhhHHHHHhhcCCCCChHHHHH----HHHhhhcCCCCCCCccchhHHHHHHHhhhhhhh
Q 003195 690 CVSSCIHVAHVNDII-EQ--EKNLVQLFTISLSPGFPWTELCS----RLQKTLDDSAGTSPHAGISSLIQELFHTVSPKV 762 (840)
Q Consensus 690 ~~~~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (840)
.|. ..+...+.+ +. ..-.+.+++..|+..+.-....+ ++..+.+..++.......-..+.|..+++.| +
T Consensus 761 ~L~---~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~-l 836 (2102)
T PLN03200 761 QLL---KHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEP-L 836 (2102)
T ss_pred HHH---hCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHH-H
Confidence 222 223334433 22 12344445555544554444332 5555555333332222333446666666664 4
Q ss_pred hhhcccchhhhhhHhhhHHHHHHH
Q 003195 763 VECISTVKIAQVHISASECLLEIC 786 (840)
Q Consensus 763 ~~~~~~~k~~~vr~~a~~~l~~i~ 786 (840)
+.|+ ..-.|.+-.+||..++.+.
T Consensus 837 ~~~l-~~~~p~~~~kai~il~~~~ 859 (2102)
T PLN03200 837 VRCL-AEGHPLVQDKAIEILSRLC 859 (2102)
T ss_pred HHHH-HcCChHHHHHHHHHHHHHh
Confidence 4566 5666889999998877664
No 18
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.59 E-value=4.2e-11 Score=133.56 Aligned_cols=536 Identities=12% Similarity=0.110 Sum_probs=327.4
Q ss_pred ccchHHHHHHHhhhcCCchHHHHHHHHhccccchhhhhhHHhH-HHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHH
Q 003195 56 KLSTYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFG-FSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQD 134 (840)
Q Consensus 56 ~~styk~l~~lA~~~g~p~lv~~fm~la~~~~~w~sr~gA~~~-l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~ 134 (840)
-.++.+-|-.=|.+.|...+..+++.++-+...-..-|--+.+ +-.|+-+.++-..||+.+|+=.+=.|..|++...|-
T Consensus 380 Rk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkILvViepllided~yar~ 459 (1172)
T KOG0213|consen 380 RKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARV 459 (1172)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeEEEeecceecchHHHhh
Confidence 5688888888999999999999999987544322223334444 378888888889999998887777778999999887
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccc-cH
Q 003195 135 AMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDI-KE 213 (840)
Q Consensus 135 a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~-~~ 213 (840)
.-..|+..|+.- .-+...+..+-..+++.+.-||.....|++-+.++...+.+.|+|..+ .... .-
T Consensus 460 egreIisnLaka------aGla~mistmrpDidn~deYVRnttarafavvasalgip~llpfLkav-------c~SkkSw 526 (1172)
T KOG0213|consen 460 EGREIISNLAKA------AGLATMISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAV-------CGSKKSW 526 (1172)
T ss_pred chHHHHHHHHHH------hhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH-------hccccch
Confidence 666777766642 235555555666778889999999999999998887777776665544 2222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHH
Q 003195 214 TVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDL 293 (840)
Q Consensus 214 ~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~L 293 (840)
.-|.++.+....++-++- |. .-..+..++-++ ++|+.+++..||..+..++..+++..++-=-.-++.+
T Consensus 527 qaRhTgIkivqqIail~G--cs--------vlphl~~lv~ii-~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsV 595 (1172)
T KOG0213|consen 527 QARHTGIKIVQQIAILSG--CS--------VLPHLKPLVKII-EHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSV 595 (1172)
T ss_pred hhhchhhHHHHHHHHHhc--ch--------hhhhhHHHHHHH-HHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHH
Confidence 346666665555543321 11 112333344433 4688888899999999999999976654211112233
Q ss_pred HHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCC--
Q 003195 294 VSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIG-- 371 (840)
Q Consensus 294 v~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~-- 371 (840)
+..|-.-++.- -+ ..-..+..|++-+++.+|++.-..+...+.-.+....+
T Consensus 596 lkpLwkgir~h-----------rg----------------k~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sP 648 (1172)
T KOG0213|consen 596 LKPLWKGIRQH-----------RG----------------KELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSP 648 (1172)
T ss_pred HHHHHHHHHHc-----------cC----------------hHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCC
Confidence 32222222110 00 00112456777777777776544444333333322223
Q ss_pred -CchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHH---HHHHHHHHhhh-cCCHHHHHHHHHHHHHh
Q 003195 372 -LNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKR---AFASACASVLK-YATPSQAQKLIEETAAL 446 (840)
Q Consensus 372 -~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~---~a~~Alg~l~~-~~~~~~~~~li~~l~~~ 446 (840)
-..|.-.+.++.+.+..-|.+=.-.-..+++.++..+-..+...-|+ ........++. ...++ .+..++..
T Consensus 649 DeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~----~v~R~v~~ 724 (1172)
T KOG0213|consen 649 DEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDP----IVSRVVLD 724 (1172)
T ss_pred hHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchH----HHHHHhhh
Confidence 33455667777666655554332234467777777763222222122 22222222322 22233 33333333
Q ss_pred hc-CChhhhHHHHHHHHHHHhhchh-hhhh-hHhhHhHHHHHhhcCC--chHHH-HHHHHHHHHhcCCChhhHHhhHHHH
Q 003195 447 HI-DDKNSQISCAILLKSYSSVASD-VLSG-YHAVIVPVIFISRFED--DKYVS-DLFEELWEENTSGDRVTLQLYLGEI 520 (840)
Q Consensus 447 ~~-~d~~~r~~~~~~i~ai~~~~~~-~f~~-~~~~llP~l~~~~~d~--d~~vr-~~~~~i~~~~~~~~~~~i~~yl~~I 520 (840)
|. +.+..|..++.++..+....|. .|.. ...+++--++.+.+.. ++.|- ..|--+..+ ...-+++|++.|
T Consensus 725 lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~----lg~r~kpylpqi 800 (1172)
T KOG0213|consen 725 LKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNA----LGGRVKPYLPQI 800 (1172)
T ss_pred hccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHH----HhhccccchHHH
Confidence 33 4466788777777776655432 2322 2233444444433322 22222 222222222 233468999999
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcc-hhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCC
Q 003195 521 VSLICEGIASSSWSSKRKSAKAICKLGEILGES-LSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAED 599 (840)
Q Consensus 521 l~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~-l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~ 599 (840)
+..++..|++++.++|++|+..++.++...... =...+..+--+|.+.+.+...++--.||.|+-++....+-. + -
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~--k-m 877 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMT--K-M 877 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcccc--c-c
Confidence 999999999999999999999999999765432 01124555567888898888888888899999888765421 1 1
Q ss_pred CCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCc----chHHhHHHHHHhhc
Q 003195 600 PTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP----KFFNIIFPLLFEMC 653 (840)
Q Consensus 600 ~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~----~l~~~v~~i~~~l~ 653 (840)
.|=...|++.+..-++.+..++...++..+|.++..-+.. +...+.+.++..+.
T Consensus 878 ~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLk 935 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLK 935 (1172)
T ss_pred CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH
Confidence 2445677777777887888899999999999999865542 34556666666553
No 19
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=3.2e-11 Score=131.68 Aligned_cols=442 Identities=14% Similarity=0.150 Sum_probs=290.4
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 003195 161 DLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFR-AMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLT 239 (840)
Q Consensus 161 ~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~-~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~ 239 (840)
.+..+++||.+.-|++++.-+-.++.+.-...-...+.+++..+.+ .+...+..-|+.+. + .++.+.+.. |
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgL--i-GlAA~~iaL-----g 75 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGL--I-GLAAVAIAL-----G 75 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchH--H-HHHHHHHHh-----c
Confidence 3567889999999999998877766532212122233344443322 12222333344221 1 122111111 1
Q ss_pred ccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhc
Q 003195 240 EISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANA 319 (840)
Q Consensus 240 ~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~ 319 (840)
..++. +++.++|.++. ++.+.+..+|-+||+.+-++++.+...+.+|.+.+...+-....+.++.+.+-
T Consensus 76 -~~~~~-Y~~~iv~Pv~~-cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~-------- 144 (675)
T KOG0212|consen 76 -IKDAG-YLEKIVPPVLN-CFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGG-------- 144 (675)
T ss_pred -cccHH-HHHHhhHHHHH-hccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccH--------
Confidence 11233 77777776663 57777889999999999999999999999999999988887776655443211
Q ss_pred ccchhhhHHHHHhhccCCcHHHHHHHHHhhc----C-hhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCcc
Q 003195 320 GIQTEKLENLRISIAKGSPMWDTLDLCINVV----D-TESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIK 394 (840)
Q Consensus 320 ~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~----d-~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~ 394 (840)
.|-++.+++.+ + .=.++.++|.+-+-+-.. +..+|....+.+..|-...+-.|-
T Consensus 145 --------------------aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~-n~~tR~flv~Wl~~Lds~P~~~m~ 203 (675)
T KOG0212|consen 145 --------------------AELLDRLIKDIVTESASTFSLPEFIPLLRERIYVI-NPMTRQFLVSWLYVLDSVPDLEMI 203 (675)
T ss_pred --------------------HHHHHHHHHHhccccccccCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhcCCcHHHH
Confidence 11222222221 1 114688999888877654 778999999999988888888889
Q ss_pred ccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcC-C-HHH--HHHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhch
Q 003195 395 PYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYA-T-PSQ--AQKLIEETAALHI-DDKNSQISCAILLKSYSSVAS 469 (840)
Q Consensus 395 p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~-~-~~~--~~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~ 469 (840)
.|.+.+++.+++.| +|.+.+||.-.-.+++.+.+.. + +.. ..+.++-+..... .++..+..+..-+..+.+..|
T Consensus 204 ~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g 282 (675)
T KOG0212|consen 204 SYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG 282 (675)
T ss_pred hcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999 8999999988878787776432 2 222 2233333333332 456677777888888888888
Q ss_pred hhhhhhHhhHhHHHHHhhcCCch-HHHHHHH---HHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHH
Q 003195 470 DVLSGYHAVIVPVIFISRFEDDK-YVSDLFE---ELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICK 545 (840)
Q Consensus 470 ~~f~~~~~~llP~l~~~~~d~d~-~vr~~~~---~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~ 545 (840)
..+-+|...++-.++..+.+.++ .+++... +..-.+++.....-.--...|++.+.+++.+...+.|-++..=+.-
T Consensus 283 ~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~ 362 (675)
T KOG0212|consen 283 RDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIIL 362 (675)
T ss_pred cchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 88888877766656555666544 3444322 1222222211000012346899999999999999999999999998
Q ss_pred HHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHH
Q 003195 546 LGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAA 625 (840)
Q Consensus 546 La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~A 625 (840)
+-.+.|..+.-|..++++.|.+.+.+++.++-...|.-+..++ .+.- .+..-+.+..+....++...-.+..+
T Consensus 363 l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~---~s~~----~~~~~~fl~sLL~~f~e~~~~l~~Rg 435 (675)
T KOG0212|consen 363 LYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASIC---SSSN----SPNLRKFLLSLLEMFKEDTKLLEVRG 435 (675)
T ss_pred HHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHh---cCcc----cccHHHHHHHHHHHHhhhhHHHHhhh
Confidence 9899999888899999999999999998666555555555554 3321 13345555555566656666666667
Q ss_pred HHHHHHHHHHcCCcchHHhHHHHHH
Q 003195 626 FSCLEQVIKAFRDPKFFNIIFPLLF 650 (840)
Q Consensus 626 l~~L~~l~~~~~~~~l~~~v~~i~~ 650 (840)
--.+.+++--+..++++..+-.|+.
T Consensus 436 ~lIIRqlC~lL~aE~IYr~~a~ILe 460 (675)
T KOG0212|consen 436 NLIIRQLCLLLNAERIYRSIADILE 460 (675)
T ss_pred hHHHHHHHHHhCHHHHHHHHHHHHh
Confidence 6777788877777677777666666
No 20
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.57 E-value=5.8e-12 Score=147.53 Aligned_cols=451 Identities=14% Similarity=0.091 Sum_probs=294.6
Q ss_pred chHHHHHHHhhhcCCchHHHHHHHHhccc--cchhhhhhHHhHHHHH-HHHhh-hhhchhhhhHHHHHHhhcCCCCHhHH
Q 003195 58 STYKELCNLANEMGQPDLIYKFMDLANYQ--VSLNSKRGAAFGFSKI-AKQAG-DALKPHLRLLIPKLVRFQYDPDKNVQ 133 (840)
Q Consensus 58 styk~l~~lA~~~g~p~lv~~fm~la~~~--~~w~sr~gA~~~l~~I-~~~~~-~~l~~~l~~lvP~L~~~~~Dp~~~VR 133 (840)
.+-.+++.++..+..+.+.-.|.++..+. .+|+++|..++|+... +-... +.++..+..++-.| ..|.+|+||
T Consensus 178 k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~l---c~d~~~~Vr 254 (759)
T KOG0211|consen 178 KAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSL---CQDDTPMVR 254 (759)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhh---ccccchhhH
Confidence 34557888888999988888888877654 3599999999888444 33333 45555555555555 899999999
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccH
Q 003195 134 DAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKE 213 (840)
Q Consensus 134 ~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~ 213 (840)
+++..=.+.+.+--+. ..--..+++.+..-..|..--||++|..++.++.+-...+. +....+.+.++...+|...
T Consensus 255 ~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~~d~~~ 330 (759)
T KOG0211|consen 255 RAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQAVEDGSW 330 (759)
T ss_pred HHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHhcChhH
Confidence 9996655554431111 11123455555555566666788888777777765433321 4445666677777788888
Q ss_pred HHHHHHHHHHHHHHHHHHH-------------hhhccccc------------------cchHHhHHHhHHHHHHhcccCC
Q 003195 214 TVRTAGDKLCRSVTSLTIR-------------LCDVTLTE------------------ISDARQSMDIVLPFLLAEGILS 262 (840)
Q Consensus 214 ~VR~aA~~~~~~l~~~~ir-------------~~~~~~~~------------------~~~~~~~l~~lLP~Ll~~gL~s 262 (840)
.||-.....+..+...+-+ .+...... .....-..+.++|.+.. -..+
T Consensus 331 ~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~-lv~d 409 (759)
T KOG0211|consen 331 RVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQV-LVLD 409 (759)
T ss_pred HHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHH-HHhc
Confidence 8877666665555433211 00000000 00111234556787753 2344
Q ss_pred chhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHH
Q 003195 263 KVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDT 342 (840)
Q Consensus 263 ~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~ea 342 (840)
.+..+|.......+.+....|+. .-++.+.|.++..+++..|.++--+.+... -
T Consensus 410 ~~~~vr~a~a~~~~~~~p~~~k~--~ti~~llp~~~~~l~de~~~V~lnli~~ls------------------------~ 463 (759)
T KOG0211|consen 410 NALHVRSALASVITGLSPILPKE--RTISELLPLLIGNLKDEDPIVRLNLIDKLS------------------------L 463 (759)
T ss_pred ccchHHHHHhccccccCccCCcC--cCccccChhhhhhcchhhHHHHHhhHHHHH------------------------H
Confidence 56788888877777776666632 334456677776666655544322211111 1
Q ss_pred HHHHHhhcChhhH-hhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHH
Q 003195 343 LDLCINVVDTESL-DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFA 421 (840)
Q Consensus 343 l~~~~~~~d~~~l-~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~ 421 (840)
++.+.+..+.+.. +.++|.+.+...+. .|++|.+..+.+..++.+.|..| +-+++-+.++.++ .|...+||++++
T Consensus 464 ~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~~~~--~~~~~~~l~~~~l-~d~v~~Ir~~aa 539 (759)
T KOG0211|consen 464 LEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLGVEF--FDEKLAELLRTWL-PDHVYSIREAAA 539 (759)
T ss_pred HHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhhhHH--hhHHHHHHHHhhh-hhhHHHHHHHHH
Confidence 1222233333322 45778877776655 78889999999999999999555 5667888888888 788899999999
Q ss_pred HHHHHhhhcCCHH-HHHHHHHHHHHhhcC-ChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHH
Q 003195 422 SACASVLKYATPS-QAQKLIEETAALHID-DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFE 499 (840)
Q Consensus 422 ~Alg~l~~~~~~~-~~~~li~~l~~~~~~-d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~ 499 (840)
..+-.++...+.+ .....++.+.....+ +.-.|++...++..++...|..+ +.+.++|.+.....|+.++||....
T Consensus 540 ~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D~vanVR~nva 617 (759)
T KOG0211|consen 540 RNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKDPVANVRINVA 617 (759)
T ss_pred HHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccCCchhhhhhHH
Confidence 9999998877633 345666666665543 36789999999999998887644 4566899988889999999998877
Q ss_pred HHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHh
Q 003195 500 ELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEIL 550 (840)
Q Consensus 500 ~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~ 550 (840)
+.+..+.+.... ...-..+.|+....-+|++.++|..|..+.+.+....
T Consensus 618 k~L~~i~~~L~~--~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 618 KHLPKILKLLDE--SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSR 666 (759)
T ss_pred HHHHHHHhhcch--HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHH
Confidence 777777665422 2233456666666667888888888888888777653
No 21
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=9.1e-12 Score=135.87 Aligned_cols=420 Identities=17% Similarity=0.188 Sum_probs=288.1
Q ss_pred chhhhhhHHhHHHHHHHHhhhhh-chhhhhHHHHHH-hhcCCCCHhHHHHHH----HHHHHhccCChHHHHHHHHHHHHH
Q 003195 88 SLNSKRGAAFGFSKIAKQAGDAL-KPHLRLLIPKLV-RFQYDPDKNVQDAMA----HIWKSLVADPKRTIDEHLDLIFDD 161 (840)
Q Consensus 88 ~w~sr~gA~~~l~~I~~~~~~~l-~~~l~~lvP~L~-~~~~Dp~~~VR~a~~----~iw~~Lv~d~~~~i~~~~~~Il~~ 161 (840)
.+..|++|+.-+.++..++-..= -..+++++..|. .|.+.|+.+-|+... .+.-+|-.+ + ..|...|++-
T Consensus 13 lYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~--~--~~Y~~~iv~P 88 (675)
T KOG0212|consen 13 LYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIK--D--AGYLEKIVPP 88 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccc--c--HHHHHHhhHH
Confidence 47889999999999998762111 124566676443 567888887777531 112223222 2 2299999999
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 003195 162 LLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEI 241 (840)
Q Consensus 162 Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~ 241 (840)
++...+|.+-++|..||.++-++..... ..+-.|++.|+..+.++..|...+||.+|. +...+.+-.+ .+
T Consensus 89 v~~cf~D~d~~vRyyACEsLYNiaKv~k-~~v~~~Fn~iFdvL~klsaDsd~~V~~~ae-LLdRLikdIV---te----- 158 (675)
T KOG0212|consen 89 VLNCFSDQDSQVRYYACESLYNIAKVAK-GEVLVYFNEIFDVLCKLSADSDQNVRGGAE-LLDRLIKDIV---TE----- 158 (675)
T ss_pred HHHhccCccceeeeHhHHHHHHHHHHhc-cCcccchHHHHHHHHHHhcCCccccccHHH-HHHHHHHHhc---cc-----
Confidence 9999999999999999999999887654 346789999999999999999999999874 4444432111 11
Q ss_pred chHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhccc
Q 003195 242 SDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGI 321 (840)
Q Consensus 242 ~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~ 321 (840)
.++.-.++.++|.|-++ +.......|.+.++-+..+-...+-.+-.|+|.+.+.|++.+++..++++.-.....+.
T Consensus 159 ~~~tFsL~~~ipLL~er-iy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~--- 234 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRER-IYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSE--- 234 (675)
T ss_pred cccccCHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHH---
Confidence 11244688899988654 55556788989888777777777778999999999999999998777665322211111
Q ss_pred chhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHH
Q 003195 322 QTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLL 401 (840)
Q Consensus 322 ~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL 401 (840)
-+.+. +++|.. + ..++.++.++..+.++ +...+.-|+..+-.++.-.|.++-+|...++
T Consensus 235 ---fL~eI-----~s~P~s---------~---d~~~~i~vlv~~l~ss-~~~iq~~al~Wi~efV~i~g~~~l~~~s~il 293 (675)
T KOG0212|consen 235 ---FLAEI-----RSSPSS---------M---DYDDMINVLVPHLQSS-EPEIQLKALTWIQEFVKIPGRDLLLYLSGIL 293 (675)
T ss_pred ---HHHHH-----hcCccc---------c---CcccchhhccccccCC-cHHHHHHHHHHHHHHhcCCCcchhhhhhhhh
Confidence 11111 111110 0 1234445544444444 3345667789999999999999999999999
Q ss_pred HHHHHhHhhcCcH-HHHHHHHHHHHHhhhcCCHHHH------HHHHHHHHHhhcCC-hhhhHHHHHHHHHHHhhchhhhh
Q 003195 402 RLLFPVVKEEKSA-AAKRAFASACASVLKYATPSQA------QKLIEETAALHIDD-KNSQISCAILLKSYSSVASDVLS 473 (840)
Q Consensus 402 ~~Ll~~l~~d~~~-~Vr~~a~~Alg~l~~~~~~~~~------~~li~~l~~~~~~d-~~~r~~~~~~i~ai~~~~~~~f~ 473 (840)
..+++.+ +|... .++..+...-+.+.+.++.+.. ..+++-+...++.| .+.|.++-.-+.-+-..+|..+-
T Consensus 294 ~~iLpc~-s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~ 372 (675)
T KOG0212|consen 294 TAILPCL-SDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLL 372 (675)
T ss_pred hhcccCC-CCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhh
Confidence 9999999 55544 5766666665666666654432 35666665555543 56788888888888777888787
Q ss_pred hhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChh-hHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhC
Q 003195 474 GYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRV-TLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILG 551 (840)
Q Consensus 474 ~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~-~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~ 551 (840)
.|.+.+.+.++....|.+++|......+...++.+... ..++++..+++++.+ ..--++..+...+..+|.-+.
T Consensus 373 ~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e----~~~~l~~Rg~lIIRqlC~lL~ 447 (675)
T KOG0212|consen 373 VHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKE----DTKLLEVRGNLIIRQLCLLLN 447 (675)
T ss_pred hhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhh----hhHHHHhhhhHHHHHHHHHhC
Confidence 88888999899999999888877666777777664322 455666666666554 333456667777888886553
No 22
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.47 E-value=5.1e-11 Score=139.67 Aligned_cols=499 Identities=14% Similarity=0.166 Sum_probs=314.7
Q ss_pred ccchHHHHHHHhhhcCCc---hHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhH
Q 003195 56 KLSTYKELCNLANEMGQP---DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNV 132 (840)
Q Consensus 56 ~~styk~l~~lA~~~g~p---~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~V 132 (840)
-..+.+-+.++|..+|++ .-+.+|..-+. ...-.-..+++..||.+....+ ...|-.-+.|.+....-+-.-.|
T Consensus 99 r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~--~~~~~~~ll~~le~l~~~eet~v 175 (759)
T KOG0211|consen 99 RLNSGRKLSNLALALGVERTRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVG--GPEYAHMLLPPLELLATVEETGV 175 (759)
T ss_pred hhhhhccccchhhhcccchhhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhcc--chhHHHHhhHHHHhhhHHHHHHH
Confidence 456667788899999998 44555655554 2223445678888888876542 12233445666666678888889
Q ss_pred HHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHHhhCCCChhH-HHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhcc
Q 003195 133 QDAMAHIWKSLV-ADPKRTIDEHLDLIFDDLLIQSGSRLWRS-REASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDD 210 (840)
Q Consensus 133 R~a~~~iw~~Lv-~d~~~~i~~~~~~Il~~Ll~~l~~~~wrv-R~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD 210 (840)
|+........+. .-++.....|+-+ ++..+...+|+. |-++|..++-..-..+.+.+.. ++.+...+..+|
T Consensus 176 r~k~ve~l~~v~~~~~~~~~~~~lv~----l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~---elr~~~~~lc~d 248 (759)
T KOG0211|consen 176 REKAVESLLKVAVGLPKEKLREHLVP----LLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKR---ELRPIVQSLCQD 248 (759)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHH----HHHHccchhhhhcchhhhhhhHHhccCCChHHHHH---HHHHHHHhhccc
Confidence 998866555544 3444444455555 444444448876 6778888877766554455555 444444455899
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCC-chhHHHHHHHHHHHHHHHhhccccccc
Q 003195 211 IKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILS-KVDSISKASIGVVMKLVKGAGIAIRPH 289 (840)
Q Consensus 211 ~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s-~~~evr~~al~~L~~la~~~g~~l~p~ 289 (840)
..+.||.++.+-+..+++.+.. ......++|.+. +|.. +.+.||..|.+.+..+.+...... +.
T Consensus 249 ~~~~Vr~~~a~~l~~~a~~~~~------------~~~~s~v~~~~~--~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~ 313 (759)
T KOG0211|consen 249 DTPMVRRAVASNLGNIAKVLES------------EIVKSEVLPTLI--QLLRDDQDSVREAAVESLVSLLDLLDDDD-DV 313 (759)
T ss_pred cchhhHHHHHhhhHHHHHHHHH------------HHHHhhccHHHh--hhhhcchhhHHHHHHHHHHHHHHhcCCch-hh
Confidence 9999999999888888776522 223455677664 4544 557899999998888877654432 33
Q ss_pred hHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhcc
Q 003195 290 LSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSG 369 (840)
Q Consensus 290 lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~ 369 (840)
...+.+.+++...+. .+.+.|
T Consensus 314 ~~~~~~~l~~~~~d~-~~~v~~---------------------------------------------------------- 334 (759)
T KOG0211|consen 314 VKSLTESLVQAVEDG-SWRVSY---------------------------------------------------------- 334 (759)
T ss_pred hhhhhHHHHHHhcCh-hHHHHH----------------------------------------------------------
Confidence 334444444444322 222222
Q ss_pred CCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHH-----HHHHHHHHH
Q 003195 370 IGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQ-----AQKLIEETA 444 (840)
Q Consensus 370 ~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~-----~~~li~~l~ 444 (840)
...+..+.|...+|. ...-..+.+.....+ .|....+|.+.+.-...+..+.+.+. .+.+++.+.
T Consensus 335 -------~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~-~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~ 404 (759)
T KOG0211|consen 335 -------MVADKFSELSSAVGP--SATRTQLVPPVSNLL-KDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQ 404 (759)
T ss_pred -------HHhhhhhhHHHHhcc--ccCcccchhhHHHHh-cchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHH
Confidence 222222233333322 112222233333344 45555555555555555555444211 122233333
Q ss_pred Hhhc-CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHh--cCCChhhHHhhHHHHH
Q 003195 445 ALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEEN--TSGDRVTLQLYLGEIV 521 (840)
Q Consensus 445 ~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~--~~~~~~~i~~yl~~Il 521 (840)
.... .++.+|.+.+..+..++...| ...-...++|.......|+.++||....+..... +... .++..+.+..+
T Consensus 405 ~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v-~g~~~~s~slL 481 (759)
T KOG0211|consen 405 VLVLDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDV-IGISTVSNSLL 481 (759)
T ss_pred HHHhcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCc-ccchhhhhhhh
Confidence 3332 234556655555555544444 3344555788776677888999997655322222 2211 24567778888
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCC
Q 003195 522 SLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPT 601 (840)
Q Consensus 522 ~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~ 601 (840)
+.+...-.|.+|++|.+....+-.++...|..+ +-+.+-+.+...+.++....++.+...+..++..+| .-|
T Consensus 482 p~i~el~~d~~wRvr~ail~~ip~la~q~~~~~--~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w----- 553 (759)
T KOG0211|consen 482 PAIVELAEDLLWRVRLAILEYIPQLALQLGVEF--FDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEW----- 553 (759)
T ss_pred hhhhhhccchhHHHHHHHHHHHHHHHHhhhhHH--hhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cch-----
Confidence 998888888899999999999999998887443 234566677777888888999999999999999888 344
Q ss_pred chHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCcchHHhHHHHHHhhccccccc
Q 003195 602 TPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTALN 659 (840)
Q Consensus 602 ~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~~l~~~~~~~ 659 (840)
+...+++.+.....+.++.||...+.++..++.+++.+-....+.|++..+..+.++|
T Consensus 554 ~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~van 611 (759)
T KOG0211|consen 554 ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVAN 611 (759)
T ss_pred hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchh
Confidence 3566666666665566899999999999999999988767778888888888886664
No 23
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.45 E-value=3.4e-09 Score=124.71 Aligned_cols=467 Identities=13% Similarity=0.100 Sum_probs=302.6
Q ss_pred hhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhh
Q 003195 114 LRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQV 193 (840)
Q Consensus 114 l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l 193 (840)
+..+++.+.++...++..+|+-..-.|..+....++ .+--+...+.+.+.+++.-+|..|..+++.+. .
T Consensus 40 ~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~----~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-------~ 108 (526)
T PF01602_consen 40 ISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE----LLILIINSLQKDLNSPNPYIRGLALRTLSNIR-------T 108 (526)
T ss_dssp -GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH----HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------S
T ss_pred CchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh----HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-------c
Confidence 346788889999999999999988888888765544 34446666777888999999999988888875 2
Q ss_pred hHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHh-HHHHHHhcccCCchhHHHHHHH
Q 003195 194 GKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDI-VLPFLLAEGILSKVDSISKASI 272 (840)
Q Consensus 194 ~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~-lLP~Ll~~gL~s~~~evr~~al 272 (840)
....+.+.+.+.+.+.|.++.||+.|..++..+.+. .. ..++. ++|.+.+ -+.+++..|+..|+
T Consensus 109 ~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~----~p----------~~~~~~~~~~l~~-lL~d~~~~V~~~a~ 173 (526)
T PF01602_consen 109 PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK----DP----------DLVEDELIPKLKQ-LLSDKDPSVVSAAL 173 (526)
T ss_dssp HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH----CH----------CCHHGGHHHHHHH-HTTHSSHHHHHHHH
T ss_pred cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc----CH----------HHHHHHHHHHHhh-hccCCcchhHHHHH
Confidence 234456777777788999999999887666655332 11 12222 4565542 24556688999999
Q ss_pred HHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhh-------hHHHHH--hhccCCcHHHHH
Q 003195 273 GVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEK-------LENLRI--SIAKGSPMWDTL 343 (840)
Q Consensus 273 ~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~-------~d~~R~--~~~~~s~l~eal 343 (840)
.++..+ +...+...+.++.++..|.+.+....|+..-.+-.....+...... ++.... .....+-..+++
T Consensus 174 ~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~ 252 (526)
T PF01602_consen 174 SLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAI 252 (526)
T ss_dssp HHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHH
Confidence 999888 3333333367788888888888888888654444333333221111 111110 011112245555
Q ss_pred HHHHhhcChh-hHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHH
Q 003195 344 DLCINVVDTE-SLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFAS 422 (840)
Q Consensus 344 ~~~~~~~d~~-~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~ 422 (840)
..+....... .+..+++.+...+.+. +.+.|..+++.+..++...+..+. +. ...+..+..+.+..||+.+..
T Consensus 253 ~~i~~l~~~~~~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v~-~~----~~~~~~l~~~~d~~Ir~~~l~ 326 (526)
T PF01602_consen 253 RLIIKLSPSPELLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAVF-NQ----SLILFFLLYDDDPSIRKKALD 326 (526)
T ss_dssp HHHHHHSSSHHHHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHHG-TH----HHHHHHHHCSSSHHHHHHHHH
T ss_pred HHHHHhhcchHHHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhhh-hh----hhhhheecCCCChhHHHHHHH
Confidence 5555544433 4678899999999854 777899999999888776633332 11 112223334778999988776
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHhh-c-CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHH
Q 003195 423 ACASVLKYATPSQAQKLIEETAALH-I-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEE 500 (840)
Q Consensus 423 Alg~l~~~~~~~~~~~li~~l~~~~-~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~ 500 (840)
.+..+ ++.+.+..+++.+.+.. . .|.+.|..++..++.++...+..+..+.+.++.++......-..++.....+
T Consensus 327 lL~~l---~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ 403 (526)
T PF01602_consen 327 LLYKL---ANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRD 403 (526)
T ss_dssp HHHHH-----HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHH
T ss_pred HHhhc---ccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHH
Confidence 66555 56677777888877666 2 3778899999999999887777777788777775532111111122222222
Q ss_pred HHHHhcCCChhhHHhhHHHHHHHHHhhhcC-CCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHH
Q 003195 501 LWEENTSGDRVTLQLYLGEIVSLICEGIAS-SSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDA 579 (840)
Q Consensus 501 i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d-~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~ 579 (840)
+... .++. -..++..+.+.+.+ .+.++++.++-.+|.-+...++ .. ..+.++..+.+.+...+...|..
T Consensus 404 ll~~-~~~~-------~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~~~~~vk~~ 473 (526)
T PF01602_consen 404 LLSN-NPEL-------REKILKKLIELLEDISSPEALAAAIWILGEYGELIEN-TE-SAPDILRSLIENFIEESPEVKLQ 473 (526)
T ss_dssp HHHH-STTT-------HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHTTSHHHHHHH
T ss_pred Hhhc-Chhh-------hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhccccHHHHHH
Confidence 2211 1111 12245555555555 5677899899999987776655 11 56778888888887777789999
Q ss_pred HHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHh--hcCHHHHHHHHHHHHHH
Q 003195 580 LLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACR--KKIKKYREAAFSCLEQV 632 (840)
Q Consensus 580 vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~R~~Al~~L~~l 632 (840)
++.++..+....+.. ...+.+.+.+.+.++ ..+.++|..|...++-+
T Consensus 474 ilt~~~Kl~~~~~~~------~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 474 ILTALAKLFKRNPEN------EVQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHHHHHHHHSCST------THHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCch------hhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 999999888655421 123588888888887 67999999998876544
No 24
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.45 E-value=5.3e-10 Score=122.83 Aligned_cols=519 Identities=14% Similarity=0.118 Sum_probs=292.9
Q ss_pred hHHHHHHHhhhcCCchHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHH
Q 003195 59 TYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAH 138 (840)
Q Consensus 59 tyk~l~~lA~~~g~p~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~ 138 (840)
|.+-...+|..+|-+++.+-+=.++.+-..|..|+-..-....|++-.|...-+|+..++.-+=.+..|.+..||--+.+
T Consensus 301 t~ra~~vva~algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~ 380 (975)
T COG5181 301 TGRAVGVVADALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTAN 380 (975)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHh
Confidence 44556678888888887765555665555699988777666788877777777888877766666689999999988888
Q ss_pred HHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHH
Q 003195 139 IWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTA 218 (840)
Q Consensus 139 iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~a 218 (840)
....+....-.---+.|+.++.-|-++....--.+=.+-..|.+.++--.+++-..-|-.+....+|+.++.+++.-.+.
T Consensus 381 alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~ 460 (975)
T COG5181 381 ALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKD 460 (975)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchh
Confidence 88888765333334567888777776653321111111122333332222433333455678888899888777654332
Q ss_pred HHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhc-c---cCCchhHHHHHHHHHHHHHHHhhccccccchHHHH
Q 003195 219 GDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAE-G---ILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLV 294 (840)
Q Consensus 219 A~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~-g---L~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv 294 (840)
+ ....|.|+...+ ..+......+.|.+++. + ..++-. .-.....+-.-+|+..|. |.++
T Consensus 461 ----~----l~v~~~C~~v~~--~tp~~lr~~v~pefF~~fw~rr~A~dr~-~~k~v~~ttvilAk~~g~------~~v~ 523 (975)
T COG5181 461 ----L----LVVERICDKVGT--DTPWKLRDQVSPEFFSPFWRRRSAGDRR-SYKQVVLTTVILAKMGGD------PRVS 523 (975)
T ss_pred ----H----HHHHHHHhccCC--CCHHHHHHhhcHHhhchHHHhhhccccc-ccceeehhHHHHHHHcCC------hHHH
Confidence 1 223566764433 23556778888888752 1 111100 001112333445666665 4567
Q ss_pred HHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhc-----ChhhHhhHHHHHHHHHhcc
Q 003195 295 SCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVV-----DTESLDQLVPHLARLVRSG 369 (840)
Q Consensus 295 ~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~-----d~~~l~~lvp~L~~~lk~~ 369 (840)
..+++-+++.... |-..++ +++...+..+ |+..-+.+...++.+++.+
T Consensus 524 ~kil~~~~De~ep---~r~m~a------------------------~~vsri~~~lg~~~~dErleerl~d~il~Afqeq 576 (975)
T COG5181 524 RKILEYYSDEPEP---YRKMNA------------------------GLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQ 576 (975)
T ss_pred HHHHhhccCCcch---hhhhhh------------------------HHHHHHHHhcccccccHHHHHHHHHHHHHHHHhc
Confidence 7888877753211 111111 1222222222 2222233445555555432
Q ss_pred CCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcC---CHH-HHHHHHHHHHH
Q 003195 370 IGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYA---TPS-QAQKLIEETAA 445 (840)
Q Consensus 370 ~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~---~~~-~~~~li~~l~~ 445 (840)
+..+++ .+.+++...-.++...+||+..++..++..| ..+.+.||..++..+|.+.++. +.. .+.++-.-+.+
T Consensus 577 -~~t~~~-il~~f~tv~vsl~~r~kp~l~~ivStiL~~L-~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE 653 (975)
T COG5181 577 -DTTVGL-ILPCFSTVLVSLEFRGKPHLSMIVSTILKLL-RSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYE 653 (975)
T ss_pred -cccccE-EEecccceeeehhhccCcchHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHH
Confidence 111111 1223333344455667899999999999999 7788999999999998887654 333 34444444444
Q ss_pred hhcCChhhhHHHHHHHHHHHhh-chhhhh---hhHhhHhHHH---HHhhcCCchHHHHHHHHHHHHhcCCChh--hHHhh
Q 003195 446 LHIDDKNSQISCAILLKSYSSV-ASDVLS---GYHAVIVPVI---FISRFEDDKYVSDLFEELWEENTSGDRV--TLQLY 516 (840)
Q Consensus 446 ~~~~d~~~r~~~~~~i~ai~~~-~~~~f~---~~~~~llP~l---~~~~~d~d~~vr~~~~~i~~~~~~~~~~--~i~~y 516 (840)
.+.+ +...+.+.+++++... +..+|. |-...++|-+ +..+|. .|...-..+...++-..+. ..+.+
T Consensus 654 ~lge--~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~---Kv~~nti~lvg~I~~~~peyi~~rEW 728 (975)
T COG5181 654 NLGE--DYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQ---KVVANTIALVGTICMNSPEYIGVREW 728 (975)
T ss_pred hcCc--ccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhH---HHhhhHHHHHHHHHhcCcccCCHHHH
Confidence 4432 2333444444444332 122332 2233344432 222221 1111111111111111100 11111
Q ss_pred H----------------------------------HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHH
Q 003195 517 L----------------------------------GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLL 562 (840)
Q Consensus 517 l----------------------------------~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~ll 562 (840)
+ .+++..++..|+......|-..+-+|+-+++..|.- .++
T Consensus 729 MRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf------sVl 802 (975)
T COG5181 729 MRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF------SVL 802 (975)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch------hhH
Confidence 1 233444444444444444444444444444444321 366
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCc
Q 003195 563 ESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP 639 (840)
Q Consensus 563 p~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~ 639 (840)
|.|...-...+-++...+|+|+.-+.+-.+..-. .|+-.|.+.+-..+.++++.+|+.|...+..++--+++-
T Consensus 803 P~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~----dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt 875 (975)
T COG5181 803 PTLMSDYETPEANVQNGVLKAMCFMFEYIGQASL----DYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT 875 (975)
T ss_pred HHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHH----HHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc
Confidence 7777776666778899999999998887775322 688999999999999999999999999999998877763
No 25
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.30 E-value=5e-08 Score=114.79 Aligned_cols=419 Identities=12% Similarity=0.098 Sum_probs=269.5
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhcc
Q 003195 131 NVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDD 210 (840)
Q Consensus 131 ~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD 210 (840)
.-++++..+......+. .++..+..+++.+.+++.+.|..+-.++..+....+ +.+.-+...+.+-+.+
T Consensus 22 ~~~~~l~kli~~~~~G~------~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~-----~~~~l~~n~l~kdl~~ 90 (526)
T PF01602_consen 22 KKKEALKKLIYLMMLGY------DISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDP-----ELLILIINSLQKDLNS 90 (526)
T ss_dssp HHHHHHHHHHHHHHTT---------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSH-----HHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHcCC------CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcch-----hHHHHHHHHHHHhhcC
Confidence 34446666665544331 234556668888889999999999999888765432 2344566677777889
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccch
Q 003195 211 IKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHL 290 (840)
Q Consensus 211 ~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~l 290 (840)
.++.+|..|.+.+..+. ..++.+.++|.+. +.+.++++-||..|+.++.++.+..+..+.+.
T Consensus 91 ~n~~~~~lAL~~l~~i~----------------~~~~~~~l~~~v~-~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~- 152 (526)
T PF01602_consen 91 PNPYIRGLALRTLSNIR----------------TPEMAEPLIPDVI-KLLSDPSPYVRKKAALALLKIYRKDPDLVEDE- 152 (526)
T ss_dssp SSHHHHHHHHHHHHHH-----------------SHHHHHHHHHHHH-HHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-
T ss_pred CCHHHHHHHHhhhhhhc----------------ccchhhHHHHHHH-HHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-
Confidence 99999998866655542 2346677777775 35677888999999999999999866654442
Q ss_pred HHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcCh---hhHhhHHHHHHHHHh
Q 003195 291 SDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDT---ESLDQLVPHLARLVR 367 (840)
Q Consensus 291 p~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~---~~l~~lvp~L~~~lk 367 (840)
+++.+.+.+.+..|.++.... .++..+ +.-+. ..++.++..+.+.+.
T Consensus 153 --~~~~l~~lL~d~~~~V~~~a~---------------------------~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~ 202 (526)
T PF01602_consen 153 --LIPKLKQLLSDKDPSVVSAAL---------------------------SLLSEI-KCNDDSYKSLIPKLIRILCQLLS 202 (526)
T ss_dssp --HHHHHHHHTTHSSHHHHHHHH---------------------------HHHHHH-HCTHHHHTTHHHHHHHHHHHHHT
T ss_pred --HHHHHhhhccCCcchhHHHHH---------------------------HHHHHH-ccCcchhhhhHHHHHHHhhhccc
Confidence 577777777766665532111 112222 11111 123444444444443
Q ss_pred ccCCCchHhHHHHHHHHHHHHhccCccccH--HHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 003195 368 SGIGLNTRVGVASFISLLVQKIGMDIKPYT--SMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAA 445 (840)
Q Consensus 368 ~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~--~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~ 445 (840)
....| .+..+++++..+ ...-.... ..+++.+...+ +..+++|.-+++.++..+.. ........++.+..
T Consensus 203 ~~~~~-~q~~il~~l~~~----~~~~~~~~~~~~~i~~l~~~l-~s~~~~V~~e~~~~i~~l~~--~~~~~~~~~~~L~~ 274 (526)
T PF01602_consen 203 DPDPW-LQIKILRLLRRY----APMEPEDADKNRIIEPLLNLL-QSSSPSVVYEAIRLIIKLSP--SPELLQKAINPLIK 274 (526)
T ss_dssp CCSHH-HHHHHHHHHTTS----TSSSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHSS--SHHHHHHHHHHHHH
T ss_pred ccchH-HHHHHHHHHHhc----ccCChhhhhHHHHHHHHHHHh-hccccHHHHHHHHHHHHhhc--chHHHHhhHHHHHH
Confidence 33122 344455554322 21111122 46888888888 67788888777777765542 22346677777777
Q ss_pred hhc-CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHH
Q 003195 446 LHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLI 524 (840)
Q Consensus 446 ~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l 524 (840)
.+. .|++.|..+...+..++...++.+. + ....++....+++..+|....++...++.. .....|++.+
T Consensus 275 lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~---~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~------~n~~~Il~eL 344 (526)
T PF01602_consen 275 LLSSSDPNVRYIALDSLSQLAQSNPPAVF-N---QSLILFFLLYDDDPSIRKKALDLLYKLANE------SNVKEILDEL 344 (526)
T ss_dssp HHTSSSHHHHHHHHHHHHHHCCHCHHHHG-T---HHHHHHHHHCSSSHHHHHHHHHHHHHH--H------HHHHHHHHHH
T ss_pred HhhcccchhehhHHHHHHHhhcccchhhh-h---hhhhhheecCCCChhHHHHHHHHHhhcccc------cchhhHHHHH
Confidence 775 4677899999999999887744333 1 111233445688889998777777665442 3445567777
Q ss_pred HhhhcC-CCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCch
Q 003195 525 CEGIAS-SSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTP 603 (840)
Q Consensus 525 ~~~L~d-~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~ 603 (840)
.+++.+ .+.++|+.+.+.|+.++...+.....+++.++..+.. ........++..+..++.... ...
T Consensus 345 ~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~----~~~~~~~~~~~~i~~ll~~~~--------~~~ 412 (526)
T PF01602_consen 345 LKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEI----SGDYVSNEIINVIRDLLSNNP--------ELR 412 (526)
T ss_dssp HHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHC----TGGGCHCHHHHHHHHHHHHST--------TTH
T ss_pred HHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhh----ccccccchHHHHHHHHhhcCh--------hhh
Confidence 777744 4788999999999999999877665555555555543 334567778888888886543 223
Q ss_pred HHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHcCC
Q 003195 604 FAIVDMVSSACRK-KIKKYREAAFSCLEQVIKAFRD 638 (840)
Q Consensus 604 ~~i~~~l~~~~~~-~~~~~R~~Al~~L~~l~~~~~~ 638 (840)
..+++.+.+.+.+ +++..+..+++++|++....++
T Consensus 413 ~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~ 448 (526)
T PF01602_consen 413 EKILKKLIELLEDISSPEALAAAIWILGEYGELIEN 448 (526)
T ss_dssp HHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc
Confidence 5567777776654 6788999999999999998875
No 26
>PTZ00429 beta-adaptin; Provisional
Probab=99.29 E-value=1.5e-07 Score=112.21 Aligned_cols=420 Identities=11% Similarity=0.050 Sum_probs=263.7
Q ss_pred HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhc
Q 003195 130 KNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMD 209 (840)
Q Consensus 130 ~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ld 209 (840)
...+.++..++..+.-.- -+..+++++++.+.+++-.+|+.+...+.......+ + ..--.+..+.+-+.
T Consensus 47 ~~kk~alKkvIa~mt~G~------DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~p--e---lalLaINtl~KDl~ 115 (746)
T PTZ00429 47 YRKKAAVKRIIANMTMGR------DVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQP--E---KALLAVNTFLQDTT 115 (746)
T ss_pred HHHHHHHHHHHHHHHCCC------CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCh--H---HHHHHHHHHHHHcC
Confidence 445777877777765431 234455556778889999999999998888754322 1 11234556666788
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccc
Q 003195 210 DIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPH 289 (840)
Q Consensus 210 D~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~ 289 (840)
|.++.+|..|.+.+..+ ....+++.+++.+. +++.++++-||..|+-++.++.+..+..+..
T Consensus 116 d~Np~IRaLALRtLs~I----------------r~~~i~e~l~~~lk-k~L~D~~pYVRKtAalai~Kly~~~pelv~~- 177 (746)
T PTZ00429 116 NSSPVVRALAVRTMMCI----------------RVSSVLEYTLEPLR-RAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ- 177 (746)
T ss_pred CCCHHHHHHHHHHHHcC----------------CcHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHhhCcccccc-
Confidence 99999999885544333 12346677777765 5788888999999999999998766543211
Q ss_pred hHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcCh--hhHhhHHHHHHHHHh
Q 003195 290 LSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDT--ESLDQLVPHLARLVR 367 (840)
Q Consensus 290 lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~--~~l~~lvp~L~~~lk 367 (840)
..+++.|.+++.+..|.++.-.. .++..+...-.. +.....+.+++..+.
T Consensus 178 -~~~~~~L~~LL~D~dp~Vv~nAl---------------------------~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~ 229 (746)
T PTZ00429 178 -QDFKKDLVELLNDNNPVVASNAA---------------------------AIVCEVNDYGSEKIESSNEWVNRLVYHLP 229 (746)
T ss_pred -cchHHHHHHHhcCCCccHHHHHH---------------------------HHHHHHHHhCchhhHHHHHHHHHHHHHhh
Confidence 13456666777777776542111 011111111000 011233444555544
Q ss_pred ccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHH----HHH
Q 003195 368 SGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLI----EET 443 (840)
Q Consensus 368 ~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li----~~l 443 (840)
+..+|. ++..++++ + +....-......++..+.+.+ ++.|++|.=+++.++-++....+++.+..++ ..+
T Consensus 230 e~~EW~-Qi~IL~lL---~-~y~P~~~~e~~~il~~l~~~L-q~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pL 303 (746)
T PTZ00429 230 ECNEWG-QLYILELL---A-AQRPSDKESAETLLTRVLPRM-SHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTAL 303 (746)
T ss_pred cCChHH-HHHHHHHH---H-hcCCCCcHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHH
Confidence 332332 44444444 2 222222334568888888988 7889999988888887777655555444443 444
Q ss_pred HHhhcCChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHH
Q 003195 444 AALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSL 523 (840)
Q Consensus 444 ~~~~~~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~ 523 (840)
+.+...+++.|..+...+..+....+..|.++++.|. .+.++...+|..-.++.-.++.. ..+..|+.-
T Consensus 304 v~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff-----~~~~Dp~yIK~~KLeIL~~Lane------~Nv~~IL~E 372 (746)
T PTZ00429 304 LTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFY-----VRYSDPPFVKLEKLRLLLKLVTP------SVAPEILKE 372 (746)
T ss_pred HHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhh-----cccCCcHHHHHHHHHHHHHHcCc------ccHHHHHHH
Confidence 4444467788888888888888888888888765432 34444446887766777665543 245667777
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCch
Q 003195 524 ICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTP 603 (840)
Q Consensus 524 l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~ 603 (840)
+.++..+.+.++++.+.++||.+|.+++... ...+..|.+-+..+. +....++.++..++++... .
T Consensus 373 L~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a----~~cV~~Ll~ll~~~~-~~v~e~i~vik~IlrkyP~---------~ 438 (746)
T PTZ00429 373 LAEYASGVDMVFVVEVVRAIASLAIKVDSVA----PDCANLLLQIVDRRP-ELLPQVVTAAKDIVRKYPE---------L 438 (746)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhChHHH----HHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHCcc---------H
Confidence 7788889999999999999999998876544 444444544444332 2334456777777664432 1
Q ss_pred HHHHHHHHHHH--h-hcCHHHHHHHHHHHHHHHHHcCC
Q 003195 604 FAIVDMVSSAC--R-KKIKKYREAAFSCLEQVIKAFRD 638 (840)
Q Consensus 604 ~~i~~~l~~~~--~-~~~~~~R~~Al~~L~~l~~~~~~ 638 (840)
.++..+++.+ . =.++..|.+.+|.+|++....++
T Consensus 439 -~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~ 475 (746)
T PTZ00429 439 -LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN 475 (746)
T ss_pred -HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh
Confidence 1444444432 1 14678899999999999886643
No 27
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.20 E-value=4.5e-09 Score=115.66 Aligned_cols=538 Identities=12% Similarity=0.087 Sum_probs=296.6
Q ss_pred ccchHHHHHHHhhhcCCchHHHHHHHHhccccchhhhhhHHhHH-HHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHH
Q 003195 56 KLSTYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGF-SKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQD 134 (840)
Q Consensus 56 ~~styk~l~~lA~~~g~p~lv~~fm~la~~~~~w~sr~gA~~~l-~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~ 134 (840)
-+++.+-|-.-|-+.|..-+..+.+.++-+-..-..-|--+.++ -.++-+.++-..||+.+|+-..=.|..|+++.+|-
T Consensus 185 R~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhkILvVv~pllided~~~r~ 264 (975)
T COG5181 185 RMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKILVVVGPLLIDEDLKRRC 264 (975)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceeeEEEEeeccccCccHHHhc
Confidence 45666677777777887777777777653221112223333333 66777777777788887776666677999999987
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccc-cH
Q 003195 135 AMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDI-KE 213 (840)
Q Consensus 135 a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~-~~ 213 (840)
.-..|+..|+.-. -+..++..+-..+++++.-||.....|++-+..+...+++.|++..+ ...- .-
T Consensus 265 ~g~eii~nL~~~~------Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~-------c~SrkSw 331 (975)
T COG5181 265 MGREIILNLVYRC------GLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEAL-------CGSRKSW 331 (975)
T ss_pred ccHHHHHHHHHHh------ccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH-------hcCccch
Confidence 6667777666321 23444444455667888999999888888888877767776665544 2222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHH
Q 003195 214 TVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDL 293 (840)
Q Consensus 214 ~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~L 293 (840)
.-|.++.+.+..++..+-+.. -..+.-++-++ .+++.+++..||..+..+++.+++..|+-=...++.+
T Consensus 332 ~aRhTgiri~qqI~~llG~s~----------l~hl~~l~~ci-~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~v 400 (975)
T COG5181 332 EARHTGIRIAQQICELLGRSR----------LSHLGPLLKCI-SKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEV 400 (975)
T ss_pred hhhchhhHHHHHHHHHhCccH----------HhhhhhHHHHH-HHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHH
Confidence 346666666655554431110 11223334333 3577778888999999999999987654211122333
Q ss_pred HHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhH----hhHHHHHHHHHhcc
Q 003195 294 VSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESL----DQLVPHLARLVRSG 369 (840)
Q Consensus 294 v~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l----~~lvp~L~~~lk~~ 369 (840)
+..|-+-.+.-. + ..-+.+..|.+..++.++.+.. .+.+..+...++++
T Consensus 401 l~pLw~g~~~hr-----------g----------------k~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~sp 453 (975)
T COG5181 401 LCPLWEGASQHR-----------G----------------KELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSP 453 (975)
T ss_pred HHHHHHHHHhcC-----------C----------------chHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCc
Confidence 333322221100 0 0001233444555555554432 22333333333333
Q ss_pred CCCchHhHHHHHHHHHHHHhccCc-cccHHHHHHHHHHhHhhcCcHHHH---HHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 003195 370 IGLNTRVGVASFISLLVQKIGMDI-KPYTSMLLRLLFPVVKEEKSAAAK---RAFASACASVLKYATPSQAQKLIEETAA 445 (840)
Q Consensus 370 ~~~~~r~~a~~~l~~L~~~~~~~~-~p~~~~lL~~Ll~~l~~d~~~~Vr---~~a~~Alg~l~~~~~~~~~~~li~~l~~ 445 (840)
+...|-... .+...+...+..- ..+-+++.+.++.-+-..|...-| |....+-..+.+-.++. ..+.++.+
T Consensus 454 -deemkk~~l-~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~---~v~~kil~ 528 (975)
T COG5181 454 -DEEMKKDLL-VVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDP---RVSRKILE 528 (975)
T ss_pred -hhhcchhHH-HHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCCh---HHHHHHHh
Confidence 111111111 1222233333221 123456666666555211122211 22222333333333332 23444555
Q ss_pred hhcCC-hhhhHHHHHHHHHHHhhch-hhhhhhH-hhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHH
Q 003195 446 LHIDD-KNSQISCAILLKSYSSVAS-DVLSGYH-AVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVS 522 (840)
Q Consensus 446 ~~~~d-~~~r~~~~~~i~ai~~~~~-~~f~~~~-~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~ 522 (840)
-|.++ +-.|...+.+...+....| ..|...+ ..++-.++.+.++.+-.+.-.+ ..+....-+..--.++|++.|+.
T Consensus 529 ~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il-~~f~tv~vsl~~r~kp~l~~ivS 607 (975)
T COG5181 529 YYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLIL-PCFSTVLVSLEFRGKPHLSMIVS 607 (975)
T ss_pred hccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEE-ecccceeeehhhccCcchHHHHH
Confidence 55433 3356554444444433222 1232222 2233333333332222211100 11111111122234699999999
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHHHHhCcc-hhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCC
Q 003195 523 LICEGIASSSWSSKRKSAKAICKLGEILGES-LSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPT 601 (840)
Q Consensus 523 ~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~-l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~ 601 (840)
.+++.|.++.+.+|+.|+..+|.++..+... =...+..+-.+|.+.+.+...++--.|+.|+-++....+ +. ..+|
T Consensus 608 tiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~--~~-~mqp 684 (975)
T COG5181 608 TILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHR--FR-SMQP 684 (975)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhc--cc-ccCC
Confidence 9999999999999999999999999765421 122466777789999998888887788888888876543 11 1225
Q ss_pred chHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCc----chHHhHHHHHHhhc
Q 003195 602 TPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP----KFFNIIFPLLFEMC 653 (840)
Q Consensus 602 ~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~----~l~~~v~~i~~~l~ 653 (840)
-...|++.+..-++.+..++....+..+|.++..-|.- +...+.+.++..+.
T Consensus 685 Pi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lk 740 (975)
T COG5181 685 PISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLK 740 (975)
T ss_pred chhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH
Confidence 56778888888887788899999999999999866552 34556666666553
No 28
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.10 E-value=1.4e-08 Score=125.95 Aligned_cols=266 Identities=14% Similarity=0.131 Sum_probs=175.5
Q ss_pred cCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcH
Q 003195 260 ILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPM 339 (840)
Q Consensus 260 L~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l 339 (840)
|.+++..||..++..|+.+. -+..++.|.+.|.+.++.+....
T Consensus 630 L~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~~A--------------------------- 672 (897)
T PRK13800 630 LADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRRAA--------------------------- 672 (897)
T ss_pred hcCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHHHH---------------------------
Confidence 45677788888888887653 14567777777776555443211
Q ss_pred HHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHH
Q 003195 340 WDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRA 419 (840)
Q Consensus 340 ~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~ 419 (840)
.+++..+...... .+.+...++++ +..+|..+++.|..+- .+ . ...++..+ .|.++.||.+
T Consensus 673 a~aL~~l~~~~~~------~~~L~~~L~~~-d~~VR~~A~~aL~~~~--~~-~--------~~~l~~~L-~D~d~~VR~~ 733 (897)
T PRK13800 673 AEGLRELVEVLPP------APALRDHLGSP-DPVVRAAALDVLRALR--AG-D--------AALFAAAL-GDPDHRVRIE 733 (897)
T ss_pred HHHHHHHHhccCc------hHHHHHHhcCC-CHHHHHHHHHHHHhhc--cC-C--------HHHHHHHh-cCCCHHHHHH
Confidence 1122222111110 13444555543 5567888888876542 01 1 12455666 7999999999
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHH
Q 003195 420 FASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLF 498 (840)
Q Consensus 420 a~~Alg~l~~~~~~~~~~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~ 498 (840)
++.+++.+- .. +.+...+. ++..+|..++.+++.+....+. .+|.+....+|+++.||...
T Consensus 734 Av~aL~~~~---~~-------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~--------~~~~L~~ll~D~d~~VR~aA 795 (897)
T PRK13800 734 AVRALVSVD---DV-------ESVAGAATDENREVRIAVAKGLATLGAGGAP--------AGDAVRALTGDPDPLVRAAA 795 (897)
T ss_pred HHHHHhccc---Cc-------HHHHHHhcCCCHHHHHHHHHHHHHhccccch--------hHHHHHHHhcCCCHHHHHHH
Confidence 999999752 11 12233333 4577899999988887543221 24555566788899999887
Q ss_pred HHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHH
Q 003195 499 EELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKD 578 (840)
Q Consensus 499 ~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke 578 (840)
...+..+... +.+.+.+...+.|++|.||..|+.+|+.+.. +..++.|...+++..|.+|.
T Consensus 796 ~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~ 856 (897)
T PRK13800 796 LAALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRK 856 (897)
T ss_pred HHHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHH
Confidence 7666543221 1233556778899999999999999986431 34568889999999999999
Q ss_pred HHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 003195 579 ALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQ 631 (840)
Q Consensus 579 ~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~ 631 (840)
.+..+|+.+. . -++..+.+.+.+++.+..+|+.|..+|..
T Consensus 857 ~A~~aL~~~~---~----------~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 857 AAVLALTRWP---G----------DPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHhccC---C----------CHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999998751 0 14567777788889999999999998863
No 29
>PTZ00429 beta-adaptin; Provisional
Probab=99.05 E-value=8.3e-06 Score=97.47 Aligned_cols=458 Identities=13% Similarity=0.073 Sum_probs=266.1
Q ss_pred hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhh
Q 003195 115 RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVG 194 (840)
Q Consensus 115 ~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~ 194 (840)
..++|-+.+....++..+|+-..-.|.......++ ..--.+..+.+.+.|+++-+|-.|...++.+- ..
T Consensus 67 S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pe----lalLaINtl~KDl~d~Np~IRaLALRtLs~Ir-------~~ 135 (746)
T PTZ00429 67 SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPE----KALLAVNTFLQDTTNSSPVVRALAVRTMMCIR-------VS 135 (746)
T ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChH----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-------cH
Confidence 44677777778889999999887777777653222 23344566777888999999988877776652 34
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHH
Q 003195 195 KHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGV 274 (840)
Q Consensus 195 ~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~ 274 (840)
..++.+...+.+++.|.++.||++|.-++..+-.. ++... .-..+++.|.+ -+.+.+..|...|+.+
T Consensus 136 ~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~-----~pelv-------~~~~~~~~L~~-LL~D~dp~Vv~nAl~a 202 (746)
T PTZ00429 136 SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD-----DMQLF-------YQQDFKKDLVE-LLNDNNPVVASNAAAI 202 (746)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-----Ccccc-------cccchHHHHHH-HhcCCCccHHHHHHHH
Confidence 45556667777788999999999887666554221 11100 00123444432 2445677889999999
Q ss_pred HHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhccc--chh---hhHHH--HHhhccCCcHHHHHHHHH
Q 003195 275 VMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGI--QTE---KLENL--RISIAKGSPMWDTLDLCI 347 (840)
Q Consensus 275 L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~--~~~---~~d~~--R~~~~~~s~l~eal~~~~ 347 (840)
|..+....+..+. .....+..|+..+.+..+|..-++-.....|.- +.+ -++.. |+.-...+.+++|+.-++
T Consensus 203 L~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il 281 (746)
T PTZ00429 203 VCEVNDYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVA 281 (746)
T ss_pred HHHHHHhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 9999876554432 233445666777766666654333322222211 111 11111 111112233566766655
Q ss_pred hhcC---hhhHhh----HHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHH
Q 003195 348 NVVD---TESLDQ----LVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAF 420 (840)
Q Consensus 348 ~~~d---~~~l~~----lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a 420 (840)
.+.. .+..+. +.+.++.+.. .+.++|-.+++.|..++.+.+..|.++ ++.++... +|+. .||...
T Consensus 282 ~l~~~~~~~~~~~~~~rl~~pLv~L~s--s~~eiqyvaLr~I~~i~~~~P~lf~~~----~~~Ff~~~-~Dp~-yIK~~K 353 (746)
T PTZ00429 282 NLASRCSQELIERCTVRVNTALLTLSR--RDAETQYIVCKNIHALLVIFPNLLRTN----LDSFYVRY-SDPP-FVKLEK 353 (746)
T ss_pred HhcCcCCHHHHHHHHHHHHHHHHHhhC--CCccHHHHHHHHHHHHHHHCHHHHHHH----HHhhhccc-CCcH-HHHHHH
Confidence 4432 233333 3344444432 255788889988888888887666553 44444444 6665 477665
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHH
Q 003195 421 ASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFE 499 (840)
Q Consensus 421 ~~Alg~l~~~~~~~~~~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~ 499 (840)
...+ ...++++.+..++..+.+-.. .|.+.++.+..+++.++...+.....+.+.++.++ .+..+.+.+ ..
T Consensus 354 LeIL---~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll----~~~~~~v~e-~i 425 (746)
T PTZ00429 354 LRLL---LKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIV----DRRPELLPQ-VV 425 (746)
T ss_pred HHHH---HHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHh----cCCchhHHH-HH
Confidence 5554 455677777777777765332 36678888889999888766655555555555433 222222332 22
Q ss_pred HHHHHhcCCChhhHHhhHHHHHHHHHhhh--c-CCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchh
Q 003195 500 ELWEENTSGDRVTLQLYLGEIVSLICEGI--A-SSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEG 576 (840)
Q Consensus 500 ~i~~~~~~~~~~~i~~yl~~Il~~l~~~L--~-d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~ 576 (840)
.+..++....+.. + ++..+++.+ . =.+.+.|.+..-.||..+...+. .+.++..+++.+.+.+.++
T Consensus 426 ~vik~IlrkyP~~---~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-----a~~~L~~~i~~f~~E~~~V 494 (746)
T PTZ00429 426 TAAKDIVRKYPEL---L---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-----GKDIIQRFIDTIMEHEQRV 494 (746)
T ss_pred HHHHHHHHHCccH---H---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-----HHHHHHHHHhhhccCCHHH
Confidence 3333332222211 1 334444322 1 13456777777788877765432 3556666677777777788
Q ss_pred HHHHHHHHHHHHHhcccccccCCCCchHHHHHHHH-HHHh-hcCHHHHHHHHHHHHHHH
Q 003195 577 KDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVS-SACR-KKIKKYREAAFSCLEQVI 633 (840)
Q Consensus 577 Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~-~~~~-~~~~~~R~~Al~~L~~l~ 633 (840)
|-.+|.+.+.+.-..+. ....++..+. ...+ ..|+++|..|+.. |+++
T Consensus 495 qlqlLta~vKlfl~~p~--------~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y-~rLL 544 (746)
T PTZ00429 495 QLAILSAAVKMFLRDPQ--------GMEPQLNRVLETVTTHSDDPDVRDRAFAY-WRLL 544 (746)
T ss_pred HHHHHHHHHHHHhcCcH--------HHHHHHHHHHHHHHhcCCChhHHHHHHHH-HHHH
Confidence 98888888877755432 1233344444 3434 3688999999754 3444
No 30
>PRK09687 putative lyase; Provisional
Probab=99.05 E-value=3.7e-08 Score=105.07 Aligned_cols=242 Identities=11% Similarity=-0.002 Sum_probs=152.2
Q ss_pred chhhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh-h
Q 003195 88 SLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQ-S 166 (840)
Q Consensus 88 ~w~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~-l 166 (840)
+..-|..|+++|+.+-+ ..+++.+.+.+.|+++.||+.+..+++.|-. +... .+..++.|... .
T Consensus 36 d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~-~~~~----~~~a~~~L~~l~~ 100 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGM-AKRC----QDNVFNILNNLAL 100 (280)
T ss_pred CHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-Cccc----hHHHHHHHHHHHh
Confidence 35677788888876532 2356666666899999999999999999863 2111 23344444444 5
Q ss_pred CCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHh
Q 003195 167 GSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQ 246 (840)
Q Consensus 167 ~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~ 246 (840)
.|++|.||.+++.+|+.+-.... .+.+.++..+...+.|....||.+|..++..+. ...
T Consensus 101 ~D~d~~VR~~A~~aLG~~~~~~~-----~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----------------~~~ 159 (280)
T PRK09687 101 EDKSACVRASAINATGHRCKKNP-----LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN----------------DEA 159 (280)
T ss_pred cCCCHHHHHHHHHHHhccccccc-----ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC----------------CHH
Confidence 78999999999999999843221 123455566666678889999998866653321 122
Q ss_pred HHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhh
Q 003195 247 SMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKL 326 (840)
Q Consensus 247 ~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~ 326 (840)
.++.+++. +.+++++||..+..+|+.+ .+.-|..++.|+..+.+..+.+.....
T Consensus 160 ai~~L~~~-----L~d~~~~VR~~A~~aLg~~--------~~~~~~~~~~L~~~L~D~~~~VR~~A~------------- 213 (280)
T PRK09687 160 AIPLLINL-----LKDPNGDVRNWAAFALNSN--------KYDNPDIREAFVAMLQDKNEEIRIEAI------------- 213 (280)
T ss_pred HHHHHHHH-----hcCCCHHHHHHHHHHHhcC--------CCCCHHHHHHHHHHhcCCChHHHHHHH-------------
Confidence 33444443 4566788999999999887 122356788888888765544432111
Q ss_pred HHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHH
Q 003195 327 ENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFP 406 (840)
Q Consensus 327 d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~ 406 (840)
.+++. .-+ +..+|.|++.++++. .+..++..++.+- .+..++.|.+
T Consensus 214 --------------~aLg~---~~~----~~av~~Li~~L~~~~---~~~~a~~ALg~ig----------~~~a~p~L~~ 259 (280)
T PRK09687 214 --------------IGLAL---RKD----KRVLSVLIKELKKGT---VGDLIIEAAGELG----------DKTLLPVLDT 259 (280)
T ss_pred --------------HHHHc---cCC----hhHHHHHHHHHcCCc---hHHHHHHHHHhcC----------CHhHHHHHHH
Confidence 11111 111 245677777776642 4556666665442 1356677777
Q ss_pred hHhhcCcHHHHHHHHHHHH
Q 003195 407 VVKEEKSAAAKRAFASACA 425 (840)
Q Consensus 407 ~l~~d~~~~Vr~~a~~Alg 425 (840)
.+..+.+..|+..+..++.
T Consensus 260 l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 260 LLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHhhCCChhHHHHHHHHHh
Confidence 6633567778777777664
No 31
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=3.2e-06 Score=96.49 Aligned_cols=447 Identities=14% Similarity=0.108 Sum_probs=256.7
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhH
Q 003195 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGK 195 (840)
Q Consensus 116 ~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~ 195 (840)
.|.+.| =...+..+++||.+|+..++.+. .+..+ +|++.++..+++..||+-.-.-|....+..+...+-
T Consensus 39 dL~~lL---dSnkd~~KleAmKRIia~iA~G~--dvS~~----Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL- 108 (968)
T KOG1060|consen 39 DLKQLL---DSNKDSLKLEAMKRIIALIAKGK--DVSLL----FPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL- 108 (968)
T ss_pred HHHHHH---hccccHHHHHHHHHHHHHHhcCC--cHHHH----HHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee-
Confidence 455554 23345679999999999999763 24444 455778889999999998876666666554422221
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHh---cccCCchhHHHHHHH
Q 003195 196 HLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLA---EGILSKVDSISKASI 272 (840)
Q Consensus 196 ~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~---~gL~s~~~evr~~al 272 (840)
-+..+-+.|.|+++-+|..|.+.+..+ | ++.|.|+++. +...+.+.-||..|.
T Consensus 109 ----SIntfQk~L~DpN~LiRasALRvlSsI-----R---------------vp~IaPI~llAIk~~~~D~s~yVRk~AA 164 (968)
T KOG1060|consen 109 ----SINTFQKALKDPNQLIRASALRVLSSI-----R---------------VPMIAPIMLLAIKKAVTDPSPYVRKTAA 164 (968)
T ss_pred ----eHHHHHhhhcCCcHHHHHHHHHHHHhc-----c---------------hhhHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 133455678999999999885555433 1 2334555442 455667889999999
Q ss_pred HHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcCh
Q 003195 273 GVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDT 352 (840)
Q Consensus 273 ~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~ 352 (840)
.++-++-+-. +.-. ++|+..+-.+|++-.|-++......-+. +=-+.+| .+.. -...+-.++..+|+
T Consensus 165 ~AIpKLYsLd-~e~k---~qL~e~I~~LLaD~splVvgsAv~AF~e--vCPerld-----LIHk--nyrklC~ll~dvde 231 (968)
T KOG1060|consen 165 HAIPKLYSLD-PEQK---DQLEEVIKKLLADRSPLVVGSAVMAFEE--VCPERLD-----LIHK--NYRKLCRLLPDVDE 231 (968)
T ss_pred HhhHHHhcCC-hhhH---HHHHHHHHHHhcCCCCcchhHHHHHHHH--hchhHHH-----HhhH--HHHHHHhhccchhh
Confidence 9888776533 2222 3566666666677666654432211110 0000000 0000 00001111111111
Q ss_pred hhHhhHHHHHHHHHhccCCCchHh--------HHHHHHHHH-HHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHH
Q 003195 353 ESLDQLVPHLARLVRSGIGLNTRV--------GVASFISLL-VQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASA 423 (840)
Q Consensus 353 ~~l~~lvp~L~~~lk~~~~~~~r~--------~a~~~l~~L-~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~A 423 (840)
=.---++..|++..|...--|+.. ..+..-... -.+.+....|-+.-+|+..-+.| ..+|++|--+++.+
T Consensus 232 WgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl-~S~n~sVVmA~aql 310 (968)
T KOG1060|consen 232 WGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLL-QSRNPSVVMAVAQL 310 (968)
T ss_pred hhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHH-hcCCcHHHHHHHhH
Confidence 000112222222222211111100 000000000 01122233445667888888888 78999998888888
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchH-HHHHHHHHH
Q 003195 424 CASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKY-VSDLFEELW 502 (840)
Q Consensus 424 lg~l~~~~~~~~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~-vr~~~~~i~ 502 (840)
..++ ++...+.++++.|..++.++...+.++-..|..++...+..|.||++.|. . ...|+. ++..=.+++
T Consensus 311 ~y~l---AP~~~~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFf----v--~ssDp~~vk~lKleiL 381 (968)
T KOG1060|consen 311 FYHL---APKNQVTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFF----V--RSSDPTQVKILKLEIL 381 (968)
T ss_pred HHhh---CCHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceE----e--ecCCHHHHHHHHHHHH
Confidence 8777 46667888899998888788888999999999999999999999998763 1 123343 333333666
Q ss_pred HHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHH
Q 003195 503 EENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLY 582 (840)
Q Consensus 503 ~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~ 582 (840)
..+... ..+.+|++-+..++.+++.++-..+.++||.++...+.-- ++.+..|+.-++.++.-+ +.
T Consensus 382 s~La~e------sni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~----~tCL~gLv~Llsshde~V----v~ 447 (968)
T KOG1060|consen 382 SNLANE------SNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVT----DTCLNGLVQLLSSHDELV----VA 447 (968)
T ss_pred HHHhhh------ccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchh----hHHHHHHHHHHhcccchh----HH
Confidence 554443 3467788888899999988888888899999998776532 455556666666554333 33
Q ss_pred HHHHHHHhcccccccCCCCchHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHcC
Q 003195 583 AIGSISTSCHKDISAEDPTTPFAIVDMVSSACRK-KIKKYREAAFSCLEQVIKAFR 637 (840)
Q Consensus 583 aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~R~~Al~~L~~l~~~~~ 637 (840)
..+..++..- +.++.....|+..+.+.+.. .-+.-|...+|.+|+.+...|
T Consensus 448 eaV~vIk~Ll----q~~p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vp 499 (968)
T KOG1060|consen 448 EAVVVIKRLL----QKDPAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVP 499 (968)
T ss_pred HHHHHHHHHH----hhChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcc
Confidence 3223222211 11222334455555555522 234567777788888877543
No 32
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.00 E-value=7.6e-08 Score=119.39 Aligned_cols=177 Identities=9% Similarity=0.025 Sum_probs=120.0
Q ss_pred HHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Q 003195 362 LARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIE 441 (840)
Q Consensus 362 L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~ 441 (840)
+.+.+++. +..+|.+|+..|..+ + + .+.+...+ .|.+..||..++.+++.+-.... ..++
T Consensus 719 l~~~L~D~-d~~VR~~Av~aL~~~----~----~-----~~~l~~~l-~D~~~~VR~~aa~aL~~~~~~~~-----~~~~ 778 (897)
T PRK13800 719 FAAALGDP-DHRVRIEAVRALVSV----D----D-----VESVAGAA-TDENREVRIAVAKGLATLGAGGA-----PAGD 778 (897)
T ss_pred HHHHhcCC-CHHHHHHHHHHHhcc----c----C-----cHHHHHHh-cCCCHHHHHHHHHHHHHhccccc-----hhHH
Confidence 44455554 566788888887653 1 1 12345556 79999999999999998853221 1133
Q ss_pred HHHHhhc-CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHH
Q 003195 442 ETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEI 520 (840)
Q Consensus 442 ~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~I 520 (840)
.+...+. +|+.+|.+++.+++.+... ..+.+.+..+..|++..||..+.+.+..+.+ ++-
T Consensus 779 ~L~~ll~D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a 839 (897)
T PRK13800 779 AVRALTGDPDPLVRAAALAALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAAA----------DVA 839 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cch
Confidence 4444443 4677898888888776321 1122334456678888899877766654321 234
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 003195 521 VSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGS 586 (840)
Q Consensus 521 l~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~ 586 (840)
++.+...++|++|.||+.|+.+|+.+. + -+...+.|.+++++...++|..+..||..
T Consensus 840 ~~~L~~~L~D~~~~VR~~A~~aL~~~~---~------~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 840 VPALVEALTDPHLDVRKAAVLALTRWP---G------DPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhccC---C------CHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 577778889999999999999999851 1 14567888899999999999999888853
No 33
>PRK09687 putative lyase; Provisional
Probab=98.98 E-value=1e-07 Score=101.74 Aligned_cols=255 Identities=12% Similarity=0.027 Sum_probs=165.3
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhh
Q 003195 156 DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCD 235 (840)
Q Consensus 156 ~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~ 235 (840)
..-++.|+..+.|++.+||..++.+|+.+=. +.+++.+.+++.|..+.||..|..++..++.
T Consensus 22 ~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~------- 83 (280)
T PRK09687 22 KLNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGM------- 83 (280)
T ss_pred hccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-------
Confidence 3456668888899999999999999977521 2566666777889999999998776665521
Q ss_pred ccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHh
Q 003195 236 VTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELH 315 (840)
Q Consensus 236 ~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~ 315 (840)
+ .......+|.|..--+.++++.||..++.+|+.+.... ..+.+.+++.+...+.+..+.++....
T Consensus 84 ~--------~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~----~~~~~~a~~~l~~~~~D~~~~VR~~a~-- 149 (280)
T PRK09687 84 A--------KRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKN----PLYSPKIVEQSQITAFDKSTNVRFAVA-- 149 (280)
T ss_pred C--------ccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc----cccchHHHHHHHHHhhCCCHHHHHHHH--
Confidence 0 00122345554321134567899999999999985322 123566777777777665444322111
Q ss_pred hhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccc
Q 003195 316 AANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKP 395 (840)
Q Consensus 316 a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p 395 (840)
.+++ .+.. +..+|.|+..+++. +..+|..|+..|+.+ ..
T Consensus 150 -------------------------~aLg----~~~~---~~ai~~L~~~L~d~-~~~VR~~A~~aLg~~--------~~ 188 (280)
T PRK09687 150 -------------------------FALS----VIND---EAAIPLLINLLKDP-NGDVRNWAAFALNSN--------KY 188 (280)
T ss_pred -------------------------HHHh----ccCC---HHHHHHHHHHhcCC-CHHHHHHHHHHHhcC--------CC
Confidence 1121 1111 34567777788765 567898999988754 22
Q ss_pred cHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHhhchhhhhhh
Q 003195 396 YTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGY 475 (840)
Q Consensus 396 ~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~~~f~~~ 475 (840)
..+...+.|+..+ .|.+..||..++.++|.+- +. .-++.+.+.+. ++..|..++.++|.+..
T Consensus 189 ~~~~~~~~L~~~L-~D~~~~VR~~A~~aLg~~~---~~----~av~~Li~~L~-~~~~~~~a~~ALg~ig~--------- 250 (280)
T PRK09687 189 DNPDIREAFVAML-QDKNEEIRIEAIIGLALRK---DK----RVLSVLIKELK-KGTVGDLIIEAAGELGD--------- 250 (280)
T ss_pred CCHHHHHHHHHHh-cCCChHHHHHHHHHHHccC---Ch----hHHHHHHHHHc-CCchHHHHHHHHHhcCC---------
Confidence 3567888899998 8999999999999999853 22 34555555553 44577777777777632
Q ss_pred HhhHhHHHHHhhc-CCchHHHHHHHHHH
Q 003195 476 HAVIVPVIFISRF-EDDKYVSDLFEELW 502 (840)
Q Consensus 476 ~~~llP~l~~~~~-d~d~~vr~~~~~i~ 502 (840)
+..+|.+..... ++|+.++..+.+.+
T Consensus 251 -~~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 251 -KTLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred -HhHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 135666655443 56777776655444
No 34
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.89 E-value=1.1e-08 Score=90.23 Aligned_cols=72 Identities=24% Similarity=0.274 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHH
Q 003195 149 RTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDK 221 (840)
Q Consensus 149 ~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~ 221 (840)
..+.+|++.|++-++..++|++||||.+||.||.++..... +.+.+|+.+||..+++...|+.+.||.+|..
T Consensus 19 ~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~-~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~ 90 (97)
T PF12755_consen 19 KDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR-GEILPYFNEIFDALCKLSADPDENVRSAAEL 90 (97)
T ss_pred HhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCchhHHHHHHH
Confidence 34899999999999999999999999999999999987654 4677899999999999999999999998843
No 35
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=0.00018 Score=85.51 Aligned_cols=535 Identities=12% Similarity=0.071 Sum_probs=288.6
Q ss_pred hHHHHHHHHhc--cccchhhhhhHHhHHHHHHHHh------hh--hhch--hhhhHHHHHHhhcCCCCHhHHHHHHHHHH
Q 003195 74 DLIYKFMDLAN--YQVSLNSKRGAAFGFSKIAKQA------GD--ALKP--HLRLLIPKLVRFQYDPDKNVQDAMAHIWK 141 (840)
Q Consensus 74 ~lv~~fm~la~--~~~~w~sr~gA~~~l~~I~~~~------~~--~l~~--~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~ 141 (840)
+.++.+++-.+ +..+|..|-+-..=|+.++-.. ++ ..+| .+.+|+-+.-.|..-.. ..|+++.-+..
T Consensus 122 e~il~lL~~~npss~~~~~~ryilLlWLsvlllnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~~~-~~r~~aallls 200 (1133)
T KOG1943|consen 122 EPILDLLERQNPSSFSDWETRYILLLWLSVLLLNPFDLSRLDESLTFDKTNVILRILSFFENYLISSG-ILRRSAALLLS 200 (1133)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHHHHHcCCCcccccCcccccCCchHHHHHHHHHHHHHhccc-hhHHHHHHHHH
Confidence 44555555222 1235888877776666666432 11 1222 35566666533443333 56666666666
Q ss_pred HhccCChHHHHHHHHHHHHHHHHhhCCCChh--HHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHh--ccccHHHHH
Q 003195 142 SLVADPKRTIDEHLDLIFDDLLIQSGSRLWR--SREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAM--DDIKETVRT 217 (840)
Q Consensus 142 ~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wr--vR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~l--dD~~~~VR~ 217 (840)
.+.+-+ +..+ .+...+.-++..-.....+ +.-+.-.++..++...+.+.+.+|-...+..+-.+- +|.+.-+|+
T Consensus 201 k~~sR~-D~~~-~~~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrK 278 (1133)
T KOG1943|consen 201 KLFSRT-DVKD-LLLSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRK 278 (1133)
T ss_pred HHcccc-cHHH-HHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHH
Confidence 555322 2233 2455555555554443334 336677788888888777777787777776664443 344456677
Q ss_pred HHHHHHHHHHHHHHHh-------------hh----ccc-------------cccchHHhHHHhHHHHHHhcccCCchhHH
Q 003195 218 AGDKLCRSVTSLTIRL-------------CD----VTL-------------TEISDARQSMDIVLPFLLAEGILSKVDSI 267 (840)
Q Consensus 218 aA~~~~~~l~~~~ir~-------------~~----~~~-------------~~~~~~~~~l~~lLP~Ll~~gL~s~~~ev 267 (840)
--.++...++-++.+- +. +.. ....+..++++.++-.|++ ++.+.+..|
T Consensus 279 llvKl~QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls-~l~d~dt~V 357 (1133)
T KOG1943|consen 279 LLVKLVQRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLS-ALSDTDTVV 357 (1133)
T ss_pred HHHHHHHHhhheecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHH-hccCCcchh
Confidence 6666666554332110 00 000 0112234677778888774 788888899
Q ss_pred HHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHH
Q 003195 268 SKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCI 347 (840)
Q Consensus 268 r~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~ 347 (840)
|=.++..++.+.++.+..+. .+.+...++.++-.++ +.+||-+- =++.++.
T Consensus 358 rWSaAKg~grvt~rlp~~La---d~vi~svid~~~p~e~----~~aWHgac----------------------LaLAELA 408 (1133)
T KOG1943|consen 358 RWSAAKGLGRVTSRLPPELA---DQVIGSVIDLFNPAED----DSAWHGAC----------------------LALAELA 408 (1133)
T ss_pred hHHHHHHHHHHHccCcHHHH---HHHHHHHHHhcCcCCc----hhHHHHHH----------------------HHHHHHH
Confidence 99999999999988775432 3345555554432221 22222110 0122221
Q ss_pred --hhcChhhHhhHHHHHHHHHh-------ccCCCchHhHHHHHHHHHHHHh-ccCccccHHHHHHHHHHhHhhcCcHHHH
Q 003195 348 --NVVDTESLDQLVPHLARLVR-------SGIGLNTRVGVASFISLLVQKI-GMDIKPYTSMLLRLLFPVVKEEKSAAAK 417 (840)
Q Consensus 348 --~~~d~~~l~~lvp~L~~~lk-------~~~~~~~r~~a~~~l~~L~~~~-~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr 417 (840)
+.+-...++.++|.+++++. .++|-.+|-+||-+++.++... +.+++||..++...++.....||...+|
T Consensus 409 ~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncR 488 (1133)
T KOG1943|consen 409 LRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCR 488 (1133)
T ss_pred hcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHh
Confidence 11223456788898888772 3456778899999999998776 4678999999999877666589999999
Q ss_pred HHHHHHHHHhhhc-CCHHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHH-hhcCCchHHH
Q 003195 418 RAFASACASVLKY-ATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFI-SRFEDDKYVS 495 (840)
Q Consensus 418 ~~a~~Alg~l~~~-~~~~~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~-~~~d~d~~vr 495 (840)
++|..|+-..+-. .+...=..++... .|+. -..|. .+...++... ..|..|...++.-++. -..-.|..+|
T Consensus 489 RAAsAAlqE~VGR~~n~p~Gi~Lis~~--dy~s-V~~rs---Ncy~~l~~~i-a~~~~y~~~~f~~L~t~Kv~HWd~~ir 561 (1133)
T KOG1943|consen 489 RAASAALQENVGRQGNFPHGISLISTI--DYFS-VTNRS---NCYLDLCVSI-AEFSGYREPVFNHLLTKKVCHWDVKIR 561 (1133)
T ss_pred HHHHHHHHHHhccCCCCCCchhhhhhc--chhh-hhhhh---hHHHHHhHHH-HhhhhHHHHHHHHHHhcccccccHHHH
Confidence 9999998766533 2211000111000 0000 00111 1222222211 1244455544433332 2345678888
Q ss_pred HHHHHHHHHhcCCChhhHH-hhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcc---hhhh-------HHHHHHH
Q 003195 496 DLFEELWEENTSGDRVTLQ-LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES---LSNY-------HHVLLES 564 (840)
Q Consensus 496 ~~~~~i~~~~~~~~~~~i~-~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~---l~~~-------l~~llp~ 564 (840)
+.+...+..+.--.+..+. -|+++ ++....+.+...|..+..+.|.++...... +... ++.+.|.
T Consensus 562 elaa~aL~~Ls~~~pk~~a~~~L~~----lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~ 637 (1133)
T KOG1943|consen 562 ELAAYALHKLSLTEPKYLADYVLPP----LLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPP 637 (1133)
T ss_pred HHHHHHHHHHHHhhHHhhcccchhh----hhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccH
Confidence 8766555544333222222 23344 444556788899999999999888653221 1101 1112222
Q ss_pred HHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCc-hHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCC--c-c
Q 003195 565 IMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTT-PFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD--P-K 640 (840)
Q Consensus 565 L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~-~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~--~-~ 640 (840)
+...--.|- .| +.+..++..+++++...-..-+..+ .+.....+.+.....| .+|.+|++.+++++..+-. + +
T Consensus 638 ~~~~~~~rg-~~-~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~ 714 (1133)
T KOG1943|consen 638 ICDRYFYRG-QG-TLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGE 714 (1133)
T ss_pred HHHHHhccc-hH-HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchh
Confidence 222221111 11 4455666666766653211000011 1223333333333344 8999999999999987632 2 2
Q ss_pred hHHhHHHHHHhhccc
Q 003195 641 FFNIIFPLLFEMCGS 655 (840)
Q Consensus 641 l~~~v~~i~~~l~~~ 655 (840)
-.+++..++..+.+.
T Consensus 715 ~~~li~~~ls~~~~~ 729 (1133)
T KOG1943|consen 715 EAPLITRYLSRLTKC 729 (1133)
T ss_pred hhHHHHHHHHHhcCc
Confidence 234556667766544
No 36
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.84 E-value=1.6e-08 Score=89.35 Aligned_cols=90 Identities=21% Similarity=0.257 Sum_probs=83.0
Q ss_pred hhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCC
Q 003195 90 NSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSR 169 (840)
Q Consensus 90 ~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~ 169 (840)
|+|+|+..|+++++-+.+....+|+..|+|.++.++.|++++||..++...-.++...+..+-.||.+|++.|.+.+.|.
T Consensus 1 n~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 1 NYRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred CchhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 57999999999999999888999999999999999999999999999999888887666666669999999999999999
Q ss_pred ChhHHHHHHH
Q 003195 170 LWRSREASCL 179 (840)
Q Consensus 170 ~wrvR~aac~ 179 (840)
+.+||.+|+.
T Consensus 81 d~~Vr~~a~~ 90 (97)
T PF12755_consen 81 DENVRSAAEL 90 (97)
T ss_pred chhHHHHHHH
Confidence 9999999964
No 37
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=0.00028 Score=84.89 Aligned_cols=499 Identities=14% Similarity=0.090 Sum_probs=281.3
Q ss_pred HHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCC----CC
Q 003195 95 AAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGS----RL 170 (840)
Q Consensus 95 A~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~----~~ 170 (840)
++-.+++.++.||+...|++.+-+-.|-+.|.+|+..-+.....++++-+.- .-.+++-.++|-=+ ...+ +.
T Consensus 370 ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~A---mGPe~vL~~lpLnl-~~~s~~~~Rs 445 (1176)
T KOG1248|consen 370 ILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRA---MGPERVLTILPLNL-HAESLSFTRS 445 (1176)
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHh---hCHHHHHHHcchhc-cccccccchh
Confidence 4556688899999988899988888888878888777666666666655432 12344555555333 2111 23
Q ss_pred h---hHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHHHhhhccccccchH
Q 003195 171 W---RSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMD---DIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDA 244 (840)
Q Consensus 171 w---rvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ld---D~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~ 244 (840)
| =.|+..- +.+..-+.+|+-.+...+-...+ +....++ ...++..-+.+.+..-..-+.+.
T Consensus 446 WLLPvLR~~i~--------~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~-----~~~tl~~QLW~LLP~FC~~P~Dl 512 (1176)
T KOG1248|consen 446 WLLPVLRDYII--------GASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVS-----LYDTLVDQLWSLLPGFCNYPVDL 512 (1176)
T ss_pred HhHHHHHHhhc--------cCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHH-----HHHHHHHHHHHhChhhhCCCccH
Confidence 4 2233322 22222233333333333222222 2222222 23333332233322222223455
Q ss_pred HhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhh---------ccccccchHHHHHHHHHhccCchhHhHHHHHHh
Q 003195 245 RQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGA---------GIAIRPHLSDLVSCMLESLSSLEDQGLNYIELH 315 (840)
Q Consensus 245 ~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~---------g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~ 315 (840)
...+..+-|.|.. .+. ..+++|..-|+.|..++... ...+..|....+|.+.+.-....+... |
T Consensus 513 ~~sF~~la~~l~~-al~-~~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~-~---- 585 (1176)
T KOG1248|consen 513 AESFTDLAPILGA-ALL-KRPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGR-K---- 585 (1176)
T ss_pred HHHHHHHHHHHHH-HHh-cchHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCcccc-c----
Confidence 6667777777652 233 34599999999999998863 123667777778888766543322211 1
Q ss_pred hhhcccchhhhHHHHHhhccCCcHHHHHH-HHHhhcChhhHhhHHHHHHHHHhccC---CCchHhHHHHHHHHHHHHhcc
Q 003195 316 AANAGIQTEKLENLRISIAKGSPMWDTLD-LCINVVDTESLDQLVPHLARLVRSGI---GLNTRVGVASFISLLVQKIGM 391 (840)
Q Consensus 316 a~~~~~~~~~~d~~R~~~~~~s~l~eal~-~~~~~~d~~~l~~lvp~L~~~lk~~~---~~~~r~~a~~~l~~L~~~~~~ 391 (840)
+-..|. +..+.+. +.+...+.++...+...+.+...+.. .......-++.+..++...
T Consensus 586 ----------~l~~~~------~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~-- 647 (1176)
T KOG1248|consen 586 ----------ILASRS------TVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQ-- 647 (1176)
T ss_pred ----------cHHHHH------HHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccc--
Confidence 011111 1111121 22222222322233332222222110 0001111222222222111
Q ss_pred CccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHH-HHHHHHHHHHHhhc-----CChhhhHHHHHHHHHHH
Q 003195 392 DIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS-QAQKLIEETAALHI-----DDKNSQISCAILLKSYS 465 (840)
Q Consensus 392 ~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~-~~~~li~~l~~~~~-----~d~~~r~~~~~~i~ai~ 465 (840)
=..+...+. .+.+.+.+..+..|++.+..-++.++..-+.+ .+...++.+.+.+. .....|.....++..+.
T Consensus 648 -~e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~ 725 (1176)
T KOG1248|consen 648 -TESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLL 725 (1176)
T ss_pred -cchhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 112222333 55566544446889999999999998873222 23344444444432 12334566677778887
Q ss_pred hhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhc---CC---ChhhHHhhHHHHHHHHHhhhcCCCHHHHHHH
Q 003195 466 SVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENT---SG---DRVTLQLYLGEIVSLICEGIASSSWSSKRKS 539 (840)
Q Consensus 466 ~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~---~~---~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~A 539 (840)
+..+..+..+....+|-+.....+.+...|....+++-.+. .. +..-....+++.+..+..++...+-.++-+.
T Consensus 726 ~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~ 805 (1176)
T KOG1248|consen 726 KLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASD 805 (1176)
T ss_pred HhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHH
Confidence 77774455566667776666666666666665444443332 11 1011133566677777777666655555555
Q ss_pred HHHHHHHHHHhCcchh-hhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcC
Q 003195 540 AKAICKLGEILGESLS-NYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKI 618 (840)
Q Consensus 540 a~~L~~La~~~~~~l~-~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 618 (840)
.-+++.+.....+.+. ++++.++..+...+.+++...+..++..+..++.+.+..... ++++++++.+.+-.++.+
T Consensus 806 Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~---~~~~~LL~sll~ls~d~k 882 (1176)
T KOG1248|consen 806 IVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLS---PHLEELLPSLLALSHDHK 882 (1176)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHh---hhHHHHHHHHHHHHHhhh
Confidence 6677777766665554 468899999999999998888888888888888887765544 889999999999998889
Q ss_pred HHHHHHHHHHHHHHHHHcCCcc
Q 003195 619 KKYREAAFSCLEQVIKAFRDPK 640 (840)
Q Consensus 619 ~~~R~~Al~~L~~l~~~~~~~~ 640 (840)
..+|...-..+..+++.++-++
T Consensus 883 ~~~r~Kvr~LlekLirkfg~~e 904 (1176)
T KOG1248|consen 883 IKVRKKVRLLLEKLIRKFGAEE 904 (1176)
T ss_pred HHHHHHHHHHHHHHHHHhCHHH
Confidence 9999999999999999997644
No 38
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=9.1e-07 Score=99.00 Aligned_cols=315 Identities=16% Similarity=0.190 Sum_probs=200.3
Q ss_pred hHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhhh-hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHH
Q 003195 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLR-LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTID 152 (840)
Q Consensus 74 ~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~-~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~ 152 (840)
..+++|+....+......+--||-+|..|++|..+.-+-.+. ..+|.+......|+..||+-+.-+++.++.|++...+
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence 368888888765544566778999999999988665443333 6789999999999999999998888999999866555
Q ss_pred HHHHH-HHHHHHHhhCCCCh-hHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Q 003195 153 EHLDL-IFDDLLIQSGSRLW-RSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLT 230 (840)
Q Consensus 153 ~~~~~-Il~~Ll~~l~~~~w-rvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ 230 (840)
-.++. +|+.|+..+..... .....+.++|.+|..+..+..--.....++|.+++++.+..+.|..-| +++++.+.
T Consensus 189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da---~WAlsyLs 265 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDA---CWALSYLT 265 (514)
T ss_pred HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHH---HHHHHHHh
Confidence 44433 67777777766554 567789999999999874333345677899999999999999987654 55443322
Q ss_pred HHhhhccccccchHHhHH-HhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhH
Q 003195 231 IRLCDVTLTEISDARQSM-DIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGL 309 (840)
Q Consensus 231 ir~~~~~~~~~~~~~~~l-~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~ 309 (840)
+ ++.+..+.++ ..++|.|.. .|..+...++.-++.++|+|+...... ...++
T Consensus 266 ----d---g~ne~iq~vi~~gvv~~LV~-lL~~~~~~v~~PaLRaiGNIvtG~d~Q--------Tq~vi----------- 318 (514)
T KOG0166|consen 266 ----D---GSNEKIQMVIDAGVVPRLVD-LLGHSSPKVVTPALRAIGNIVTGSDEQ--------TQVVI----------- 318 (514)
T ss_pred ----c---CChHHHHHHHHccchHHHHH-HHcCCCcccccHHHhhccceeeccHHH--------HHHHH-----------
Confidence 1 1111112222 234555543 244444456666666666655322111 00000
Q ss_pred HHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHh
Q 003195 310 NYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKI 389 (840)
Q Consensus 310 ~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~ 389 (840)
+ ...+|.|..++.....-..|.+||-+++.++.-.
T Consensus 319 -----------------------------------------~----~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~ 353 (514)
T KOG0166|consen 319 -----------------------------------------N----SGALPVLSNLLSSSPKESIKKEACWTISNITAGN 353 (514)
T ss_pred -----------------------------------------h----cChHHHHHHHhccCcchhHHHHHHHHHHHhhcCC
Confidence 0 1133444444442212224677888888877644
Q ss_pred ccCccccHH-HHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHH-----HHHHHHHhhc-CChhhhHHHHHHHH
Q 003195 390 GMDIKPYTS-MLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQK-----LIEETAALHI-DDKNSQISCAILLK 462 (840)
Q Consensus 390 ~~~~~p~~~-~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~-----li~~l~~~~~-~d~~~r~~~~~~i~ 462 (840)
...+....+ .+++.++..+ +.....+||+++-|++.+.....++.+.- .++++.+++. .|.+.-..+-.++.
T Consensus 354 ~~qiqaVida~l~p~Li~~l-~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~ 432 (514)
T KOG0166|consen 354 QEQIQAVIDANLIPVLINLL-QTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLE 432 (514)
T ss_pred HHHHHHHHHcccHHHHHHHH-hccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHH
Confidence 444444443 6888888888 55668999999999999998888776533 3456666664 34333333344444
Q ss_pred HH
Q 003195 463 SY 464 (840)
Q Consensus 463 ai 464 (840)
.+
T Consensus 433 ni 434 (514)
T KOG0166|consen 433 NI 434 (514)
T ss_pred HH
Confidence 43
No 39
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=0.0012 Score=78.31 Aligned_cols=608 Identities=12% Similarity=0.075 Sum_probs=297.5
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCC------
Q 003195 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRK------ 189 (840)
Q Consensus 116 ~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~------ 189 (840)
+|++.+... ...+|-....|.+.+.... -.++++.+++.+...+.+.+-..=.++-..+..|...-.
T Consensus 93 nIl~~iv~~----p~~iRvql~~~l~~Ii~~D---~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~ee 165 (1010)
T KOG1991|consen 93 NILETIVQV----PELIRVQLTACLNTIIKAD---YPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEE 165 (1010)
T ss_pred HHHHHHHhC----chHHHHHHHHHHHHHHhcC---CcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccc
Confidence 577777533 5567777888888776532 236888899988888988775555566666666665321
Q ss_pred ----chhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhc-----cc
Q 003195 190 ----FDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAE-----GI 260 (840)
Q Consensus 190 ----~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~-----gL 260 (840)
...+..++|.|....-+.+.+.....-+.....++.+-..+--.+............-+...+.++ ++ ++
T Consensus 166 R~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~-~rpvP~E~l 244 (1010)
T KOG1991|consen 166 RQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSIL-NRPVPVEVL 244 (1010)
T ss_pred cccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHH-cCCCChhcc
Confidence 113556667777766666766554433332223332222111111111111111222233323222 22 11
Q ss_pred CC--------chhHHHHHHHHHHHHHHHhhcccc--cc--------chHHHHHHHHHhccCchhHhHHHHHHhhhhcccc
Q 003195 261 LS--------KVDSISKASIGVVMKLVKGAGIAI--RP--------HLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQ 322 (840)
Q Consensus 261 ~s--------~~~evr~~al~~L~~la~~~g~~l--~p--------~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~ 322 (840)
.- .-|..|++++..+.++.+++|+.- .| |.....+.+++.+-
T Consensus 245 ~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~l-------------------- 304 (1010)
T KOG1991|consen 245 SLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFL-------------------- 304 (1010)
T ss_pred cCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 11 124588899999999999988631 10 00111111111000
Q ss_pred hhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHH
Q 003195 323 TEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLR 402 (840)
Q Consensus 323 ~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~ 402 (840)
..++.-|. -.|+.+.++..++..+.+.+..+ .+=..++||..-++.
T Consensus 305 -k~l~~~~~---------------~~yls~rvl~~~l~fl~~~Vs~~------------------~twkll~PHl~~ii~ 350 (1010)
T KOG1991|consen 305 -KILEQWRQ---------------QLYLSDRVLYYLLNFLEQCVSHA------------------STWKLLKPHLQVIIQ 350 (1010)
T ss_pred -HHHHHHHh---------------cccCCHHHHHHHHHHHHHhccHH------------------HHHHHhhhHHHHHHH
Confidence 00000000 01111112222222222211110 111345666665554
Q ss_pred H-HHHhHh----------hcCcHHHHHH-------------HHHHHHHhhhcCCHHHHHHHHHHHHHhhc---C------
Q 003195 403 L-LFPVVK----------EEKSAAAKRA-------------FASACASVLKYATPSQAQKLIEETAALHI---D------ 449 (840)
Q Consensus 403 ~-Ll~~l~----------~d~~~~Vr~~-------------a~~Alg~l~~~~~~~~~~~li~~l~~~~~---~------ 449 (840)
. +++.++ +|+...+|+. +..-+-.+++.-+.+.+.++++.+.+-+. +
T Consensus 351 ~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~ 430 (1010)
T KOG1991|consen 351 DVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNK 430 (1010)
T ss_pred HhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCcc
Confidence 4 334432 4566667742 22223333333445666777777665442 1
Q ss_pred ChhhhHHHHHHHHHHHhhc--hhhhhhhHhhH-hHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHh
Q 003195 450 DKNSQISCAILLKSYSSVA--SDVLSGYHAVI-VPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICE 526 (840)
Q Consensus 450 d~~~r~~~~~~i~ai~~~~--~~~f~~~~~~l-lP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~ 526 (840)
++..+..+-.++++++... ...|+..++.+ .+.++-.-.++--.+|.-...+...+..- .-.....+.+++....+
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~-df~d~~~l~~ale~t~~ 509 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSI-DFKDPNNLSEALELTHN 509 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHH
Confidence 2333445666777776432 11233323222 23333223344445665444443333211 00123457788899999
Q ss_pred hhc-CCCHHHHHHHHHHHHHHHHHhC---cchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCc
Q 003195 527 GIA-SSSWSSKRKSAKAICKLGEILG---ESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTT 602 (840)
Q Consensus 527 ~L~-d~s~~vR~~Aa~~L~~La~~~~---~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~ 602 (840)
++. |++-.||-.||.+|..++.... +.+++|++.++..|..-.++-+- +.+-..+-.++..+++++. ||
T Consensus 510 ~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En---d~Lt~vme~iV~~fseEls----Pf 582 (1010)
T KOG1991|consen 510 CLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN---DDLTNVMEKIVCKFSEELS----PF 582 (1010)
T ss_pred HhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch---hHHHHHHHHHHHHHHHhhc----hh
Confidence 988 8999999999999999998765 34888899999888887766442 3334445555555555443 65
Q ss_pred hHHHHH----HHHHHHhh---c---CHH---HHHHHHHHHHHHHHHcCCc-c----hHHhHHHHHHhhcccccccCCCCC
Q 003195 603 PFAIVD----MVSSACRK---K---IKK---YREAAFSCLEQVIKAFRDP-K----FFNIIFPLLFEMCGSTALNKSGQV 664 (840)
Q Consensus 603 ~~~i~~----~l~~~~~~---~---~~~---~R~~Al~~L~~l~~~~~~~-~----l~~~v~~i~~~l~~~~~~~~~~~~ 664 (840)
...+.+ +..+.+.. . ... .-...++++..++.++.+- + +..++.|++..+-..
T Consensus 583 A~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~--------- 653 (1010)
T KOG1991|consen 583 AVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKN--------- 653 (1010)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH---------
Confidence 555544 44444432 1 112 2233344555555666542 2 455555655555332
Q ss_pred CCCCCccchhhhccccCCchhHHHhhhhhhHHhhchhhHHHhhhhhHHHHHhhcCCCC--ChHHHHHHHHhhhcCCCCCC
Q 003195 665 PLPSDASKEESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGF--PWTELCSRLQKTLDDSAGTS 742 (840)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~ 742 (840)
-+.+. ...+++.+-.+ +++.++|--++=.|+|.+..+..... +++...--|.+.++...+.
T Consensus 654 ------~i~df--------yeE~~ei~~~~--t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~- 716 (1010)
T KOG1991|consen 654 ------DITDF--------YEELLEIVSSL--TFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPS- 716 (1010)
T ss_pred ------hhHHH--------HHHHHHHHhhh--hhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchh-
Confidence 11111 11222222111 34555543333378888888753332 2336666888888754433
Q ss_pred CccchhHHHHH-HHhhhhhhhhh-hcccchhhhhhHhhhHHHHHHHHHhhhcccccccccchhhhhHHHHHh--hhhHhH
Q 003195 743 PHAGISSLIQE-LFHTVSPKVVE-CISTVKIAQVHISASECLLEICKLFRQISSVYSSNIGIKGELVHQCEM--EKNMEA 818 (840)
Q Consensus 743 ~~~~~~~~~~~-~~~~~~~~~~~-~~~~~k~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 818 (840)
+.-.+++.+ +|+-.+..+.. +.. ..-.+.|.-.+..|+-++++ .++.-.+.|..-.+..+=. |.++--
T Consensus 717 --~~s~~~y~~il~~i~~~~l~~e~~~----D~d~~~a~kLle~iiL~~kg--~~dq~iplf~~~a~~~l~~~~e~s~~~ 788 (1010)
T KOG1991|consen 717 --LLSNPDYLQILLEIIKKVLTSENGE----DSDCESACKLLEVIILNCKG--LLDQYIPLFLELALSRLTREVETSELR 788 (1010)
T ss_pred --hhccchHHHHHHHHHHHHHcCCCCc----hHHHHHHHHHHHHHHHHhcC--cHhhHhHHHHHHHHHHHhccccchHHH
Confidence 111222333 33333333322 121 33455666777777777854 3444455565555554444 444433
Q ss_pred HHHHHHHHH
Q 003195 819 KSLLKKCID 827 (840)
Q Consensus 819 ~~~~~~~~~ 827 (840)
.=+|+=.++
T Consensus 789 ~~~leVvin 797 (1010)
T KOG1991|consen 789 VMLLEVVIN 797 (1010)
T ss_pred HHHHHHHHH
Confidence 333333333
No 40
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=0.00016 Score=85.91 Aligned_cols=348 Identities=13% Similarity=0.129 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Q 003195 151 IDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLT 230 (840)
Q Consensus 151 i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ 230 (840)
+.++++.++..|++++.|.+-+||-+||..++.+....+++-...-+..++. +|.-.+|.+. -. .+|-.++++.
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid-~~~p~e~~~a-WH----gacLaLAELA 408 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVID-LFNPAEDDSA-WH----GACLALAELA 408 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHH-hcCcCCchhH-HH----HHHHHHHHHH
Confidence 4578889999999999999999999999999999887775434344444444 3333332221 11 2233444444
Q ss_pred HHhhhccccccchHHhHHHhHHHHHHh-------cccCCchhHHHHHHHHHHHHHHHhhc-cccccchHHHHHHHHHhcc
Q 003195 231 IRLCDVTLTEISDARQSMDIVLPFLLA-------EGILSKVDSISKASIGVVMKLVKGAG-IAIRPHLSDLVSCMLESLS 302 (840)
Q Consensus 231 ir~~~~~~~~~~~~~~~l~~lLP~Ll~-------~gL~s~~~evr~~al~~L~~la~~~g-~~l~p~lp~Lv~~Ll~~ls 302 (840)
.|.+. ....+..++|.++. +|-.+....||..||-++-.+++... .+++|++..|.+.|+....
T Consensus 409 ~rGlL--------lps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~Al 480 (1133)
T KOG1943|consen 409 LRGLL--------LPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVAL 480 (1133)
T ss_pred hcCCc--------chHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHh
Confidence 44332 12345667787763 24445567899999999999998875 5699999999999986443
Q ss_pred CchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHh--ccCCCchHhHHHH
Q 003195 303 SLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVR--SGIGLNTRVGVAS 380 (840)
Q Consensus 303 ~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk--~~~~~~~r~~a~~ 380 (840)
..+++ | -.|.+. .|+.+.++..+.- |.=++++. +-+.+..|..|-.
T Consensus 481 -FDrev-n-----------------cRRAAs-------AAlqE~VGR~~n~------p~Gi~Lis~~dy~sV~~rsNcy~ 528 (1133)
T KOG1943|consen 481 -FDREV-N-----------------CRRAAS-------AALQENVGRQGNF------PHGISLISTIDYFSVTNRSNCYL 528 (1133)
T ss_pred -cCchh-h-----------------HhHHHH-------HHHHHHhccCCCC------CCchhhhhhcchhhhhhhhhHHH
Confidence 11211 1 112211 1222222221100 11111111 1112223334433
Q ss_pred HHHHHHHHhccCccccHHHHHHHHHHh-HhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhh-cCChhhhHHHH
Q 003195 381 FISLLVQKIGMDIKPYTSMLLRLLFPV-VKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALH-IDDKNSQISCA 458 (840)
Q Consensus 381 ~l~~L~~~~~~~~~p~~~~lL~~Ll~~-l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~-~~d~~~r~~~~ 458 (840)
.+..-+ ..+.-|.+.+++.++.. + .+-+..+|+.++.|+..+...-+......+++++++.. ..|.+.|..+.
T Consensus 529 ~l~~~i----a~~~~y~~~~f~~L~t~Kv-~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~ 603 (1133)
T KOG1943|consen 529 DLCVSI----AEFSGYREPVFNHLLTKKV-CHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVF 603 (1133)
T ss_pred HHhHHH----HhhhhHHHHHHHHHHhccc-ccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhH
Confidence 333222 23445777777777766 5 67789999999999999877666555556667766654 35666665444
Q ss_pred ----HHHHHHHhhchhh---hhh---hHhhHhHHHHHhhcCCc--hHHHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHH
Q 003195 459 ----ILLKSYSSVASDV---LSG---YHAVIVPVIFISRFEDD--KYVSDLFEELWEENTSGDRVTLQLYL-GEIVSLIC 525 (840)
Q Consensus 459 ----~~i~ai~~~~~~~---f~~---~~~~llP~l~~~~~d~d--~~vr~~~~~i~~~~~~~~~~~i~~yl-~~Il~~l~ 525 (840)
.++++.-+..|-. +.. ....++|.++......- .-.|....+..+.+..+-......++ .....++.
T Consensus 604 la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~ 683 (1133)
T KOG1943|consen 604 LAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLA 683 (1133)
T ss_pred HHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence 4444433222110 111 11113444433222211 11222222222222222111112222 22344555
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHHh
Q 003195 526 EGIASSSWSSKRKSAKAICKLGEIL 550 (840)
Q Consensus 526 ~~L~d~s~~vR~~Aa~~L~~La~~~ 550 (840)
+.+.+++ .+|..|..++++++..+
T Consensus 684 ~~l~~~n-~i~~~av~av~~l~s~y 707 (1133)
T KOG1943|consen 684 QNLTLPN-QIRDAAVSAVSDLVSTY 707 (1133)
T ss_pred HhhcchH-HHHHHHHHHHHHHHHHH
Confidence 5666666 89999999999999864
No 41
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.77 E-value=3.5e-05 Score=89.54 Aligned_cols=380 Identities=14% Similarity=0.138 Sum_probs=213.8
Q ss_pred HHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHH-HHHHHHHHHhhCCCChhHHHH
Q 003195 98 GFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHL-DLIFDDLLIQSGSRLWRSREA 176 (840)
Q Consensus 98 ~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~-~~Il~~Ll~~l~~~~wrvR~a 176 (840)
.+..+++.. .....++++.|.|.+...+|++.||+-++.....++.++....+... ..+++.++..+.+++-.|.+.
T Consensus 61 iL~~~l~~~--~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~ 138 (503)
T PF10508_consen 61 ILKRLLSAL--SPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKA 138 (503)
T ss_pred HHHHHHhcc--CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHH
Confidence 345555533 22233677889999999999999999998888887766543333222 568888999999999999999
Q ss_pred HHHHHHHHHccCCchhhhHHHHHH-----HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHH--
Q 003195 177 SCLSLADIIQGRKFDQVGKHLRRI-----WTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMD-- 249 (840)
Q Consensus 177 ac~Al~~Ll~~~~~~~l~~~L~~l-----~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~-- 249 (840)
|+.+|..+.... +.+..+ .+.+..++...++.+|-.+..++-.+++..- +.-..+.
T Consensus 139 A~~~L~~l~~~~------~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~-----------~~~~~~~~s 201 (503)
T PF10508_consen 139 AIKALKKLASHP------EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSP-----------EAAEAVVNS 201 (503)
T ss_pred HHHHHHHHhCCc------hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCH-----------HHHHHHHhc
Confidence 999999998642 222333 5666666766677888776666555533210 1112222
Q ss_pred hHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchH--HHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhH
Q 003195 250 IVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLS--DLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLE 327 (840)
Q Consensus 250 ~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp--~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d 327 (840)
.+++.++. .+.+++--+|..+++++..++... .-..|+. .+++.|...+.+.+. |.
T Consensus 202 gll~~ll~-eL~~dDiLvqlnalell~~La~~~--~g~~yL~~~gi~~~L~~~l~~~~~-----------------dp-- 259 (503)
T PF10508_consen 202 GLLDLLLK-ELDSDDILVQLNALELLSELAETP--HGLQYLEQQGIFDKLSNLLQDSEE-----------------DP-- 259 (503)
T ss_pred cHHHHHHH-HhcCccHHHHHHHHHHHHHHHcCh--hHHHHHHhCCHHHHHHHHHhcccc-----------------CC--
Confidence 37777774 477777779999999999999722 1112221 133333333321100 00
Q ss_pred HHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHh
Q 003195 328 NLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPV 407 (840)
Q Consensus 328 ~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~ 407 (840)
|.. .-++| +...+.+.++...+..+..-.+.++..++..
T Consensus 260 --~~~-----------------------~~~l~----------------g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~ 298 (503)
T PF10508_consen 260 --RLS-----------------------SLLLP----------------GRMKFFGNLARVSPQEVLELYPAFLERLFSM 298 (503)
T ss_pred --ccc-----------------------chhhh----------------hHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 000 00112 2224444444433333434456778888888
Q ss_pred HhhcCcHHHHHHHHHHHHHhhhcCCHHHHH--H---HHHHHHHhhc-----CChhhhHHHHHHHHHHHhhchhhhhhhHh
Q 003195 408 VKEEKSAAAKRAFASACASVLKYATPSQAQ--K---LIEETAALHI-----DDKNSQISCAILLKSYSSVASDVLSGYHA 477 (840)
Q Consensus 408 l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~--~---li~~l~~~~~-----~d~~~r~~~~~~i~ai~~~~~~~f~~~~~ 477 (840)
+ +..+...+..|..++|.+........+- + -+.++++.++ +..+.|..+.+++..+
T Consensus 299 ~-~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~i------------- 364 (503)
T PF10508_consen 299 L-ESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASI------------- 364 (503)
T ss_pred h-CCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-------------
Confidence 7 6778999999999999887433221111 0 1111222211 0112222222222222
Q ss_pred hHhHHHHHhhcC-CchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHh-Ccchh
Q 003195 478 VIVPVIFISRFE-DDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEIL-GESLS 555 (840)
Q Consensus 478 ~llP~l~~~~~d-~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~-~~~l~ 555 (840)
+....+ .++++-.+. +-|=+..++.+.. ..+...++.|-.++|.++...+..++..- |-..-
T Consensus 365 ------l~~~~~~~~~~i~~~~-~~w~~~~~~~~~~---------~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i 428 (503)
T PF10508_consen 365 ------LTSGTDRQDNDILSIT-ESWYESLSGSPLS---------NLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREI 428 (503)
T ss_pred ------HhcCCCCchHHHHHHH-HHHHHHhcCCchH---------HHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 211122 233333322 3333333322111 15667778899999999999999999642 21111
Q ss_pred hhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHH
Q 003195 556 NYHHVLLESIMKEVPGRLWEGKDALLYAIGSIST 589 (840)
Q Consensus 556 ~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~ 589 (840)
-..+.++..|..+-.+.+.++|+.-......++.
T Consensus 429 ~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 429 CSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred HhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 1235566666666666666676665555555554
No 42
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.73 E-value=3.5e-05 Score=87.64 Aligned_cols=390 Identities=14% Similarity=0.148 Sum_probs=203.4
Q ss_pred HHHHHhhcCCCCH---hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCC-CChhHHHHHHHHHHHHHccCCc---
Q 003195 118 IPKLVRFQYDPDK---NVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGS-RLWRSREASCLSLADIIQGRKF--- 190 (840)
Q Consensus 118 vP~L~~~~~Dp~~---~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~-~~wrvR~aac~Al~~Ll~~~~~--- 190 (840)
+|+|+.-..|.++ .-.+....+...+..++ ...+.-...++..+-....+ .+-+.-.+.+..+..+++....
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~-~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~ 79 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSP-QILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ 79 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCCh-hHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence 3666666676655 33344556666666543 22333333333333333322 2345566777777777764322
Q ss_pred -hhhhHHHHH-HHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHh----cccC
Q 003195 191 -DQVGKHLRR-IWTAAFRAMDD---IKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLA----EGIL 261 (840)
Q Consensus 191 -~~l~~~L~~-l~~~l~~~ldD---~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~----~gL~ 261 (840)
....-|..+ +++.+++..-. .....-.....++..+....+|.++++ ..+..++.+...++. ..+.
T Consensus 80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~-----~q~~~~~~~~~lf~~~~~~~~~~ 154 (415)
T PF12460_consen 80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPE-----KQQEILDELYSLFLSPKSFSPFQ 154 (415)
T ss_pred cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHHccccccCCCC
Confidence 235556665 77777766521 111111122233334444446666543 334456666655441 1111
Q ss_pred Cch---hHHHHHHHHHHHHHHHhhccccc-cchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCC
Q 003195 262 SKV---DSISKASIGVVMKLVKGAGIAIR-PHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGS 337 (840)
Q Consensus 262 s~~---~evr~~al~~L~~la~~~g~~l~-p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s 337 (840)
.+. .+.....+..+..+.....+... |...+++..+++.....+. +..|..+
T Consensus 155 ~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~--------------------~~~~~~~---- 210 (415)
T PF12460_consen 155 PSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSED--------------------EFSRLAA---- 210 (415)
T ss_pred ccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCC--------------------hHHHHHH----
Confidence 111 11222333334444444433322 4555555555554332211 0111111
Q ss_pred cHHHHHHHH-HhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHH
Q 003195 338 PMWDTLDLC-INVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAA 416 (840)
Q Consensus 338 ~l~eal~~~-~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~V 416 (840)
.+.+..+ .++.+++.++.++..+...+........+..+..++.-++.-+=..-.|....++..++..+ ++ +.+
T Consensus 211 --~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL-~~--~~~ 285 (415)
T PF12460_consen 211 --LQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELL-SS--PEL 285 (415)
T ss_pred --HHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh-CC--hhh
Confidence 0111111 12222333344444443333222234445566666666666555555566666666666666 22 555
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHhhchhhh-hhhHhhHhHHHHHhhcCCchHHH
Q 003195 417 KRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVL-SGYHAVIVPVIFISRFEDDKYVS 495 (840)
Q Consensus 417 r~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~~~f-~~~~~~llP~l~~~~~d~d~~vr 495 (840)
...++.+++.++.-. ++...+ ..++..+ -.| +.++..++|.+..+-...+.+.|
T Consensus 286 g~~aA~~f~il~~d~-~~~l~~---------------------~~~a~vk---lLykQR~F~~~~p~L~~~~~~~~~~~k 340 (415)
T PF12460_consen 286 GQQAAKAFGILLSDS-DDVLNK---------------------ENHANVK---LLYKQRFFTQVLPKLLEGFKEADDEIK 340 (415)
T ss_pred HHHHHHHHhhHhcCc-HHhcCc---------------------cccchhh---hHHhHHHHHHHHHHHHHHHhhcChhhH
Confidence 666666666554210 000000 0000000 001 35667788877666555555577
Q ss_pred HHHHHHHHHhcCCChh-hHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHH
Q 003195 496 DLFEELWEENTSGDRV-TLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMK 567 (840)
Q Consensus 496 ~~~~~i~~~~~~~~~~-~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~ 567 (840)
..+...+..+....+. -+.+++++++|++.+.|+-++.++|.++..++..+...-++.+.+|+..++|.|++
T Consensus 341 ~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 341 SNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 7776666666655544 45789999999999999999999999999999999988888889999999999876
No 43
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=0.00097 Score=77.26 Aligned_cols=466 Identities=13% Similarity=0.120 Sum_probs=222.6
Q ss_pred chHHHHHHHHhcc-ccchhhhhhHHhHHHHHHHHh----hhh---hc-hhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHh
Q 003195 73 PDLIYKFMDLANY-QVSLNSKRGAAFGFSKIAKQA----GDA---LK-PHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSL 143 (840)
Q Consensus 73 p~lv~~fm~la~~-~~~w~sr~gA~~~l~~I~~~~----~~~---l~-~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~L 143 (840)
+...-.++++..+ +.+.+.|-+|+..|-.-++.- ++. +- .--.++-.-++..+....+.++.-..++...+
T Consensus 36 ~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~I 115 (960)
T KOG1992|consen 36 QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLI 115 (960)
T ss_pred CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3444556665533 334566667777776655521 111 11 01112222233345667778888887777766
Q ss_pred ccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhcccc-----------
Q 003195 144 VADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIK----------- 212 (840)
Q Consensus 144 v~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~----------- 212 (840)
... ...+.++.++++|.+.+.+.+..+-.++-..-..+...-.+ ...-..+|..+-.++|--.
T Consensus 116 g~~---DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~---efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~ 189 (960)
T KOG1992|consen 116 GKR---DFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRP---EFRSDALWLEIKLVLDRFAEPLTDLFRKTM 189 (960)
T ss_pred hcc---ccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCc---ccccHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 532 24457999999999999887776655554444444432111 1111133333322332100
Q ss_pred HHHHHHH--HHHHHHHHHHHHHhhhccc-----cccchHHhHHHhHHHHHHh------cccCCc------hhHHHHHHHH
Q 003195 213 ETVRTAG--DKLCRSVTSLTIRLCDVTL-----TEISDARQSMDIVLPFLLA------EGILSK------VDSISKASIG 273 (840)
Q Consensus 213 ~~VR~aA--~~~~~~l~~~~ir~~~~~~-----~~~~~~~~~l~~lLP~Ll~------~gL~s~------~~evr~~al~ 273 (840)
+..+..+ +..++.+-.+++=.|.--+ .-++..+..++.-|+.... ..+.++ -.++|..-|+
T Consensus 190 ~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICE 269 (960)
T KOG1992|consen 190 ELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICE 269 (960)
T ss_pred HHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHH
Confidence 0111000 0011211111110111000 0122333344444544332 112222 2567888888
Q ss_pred HHHHHHHhhccccccchHHHHHHHHHhccCchhH-hHHHHHHhhhhcccchhhhHHH--HHh---hc-cCCcHHHHHHH-
Q 003195 274 VVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQ-GLNYIELHAANAGIQTEKLENL--RIS---IA-KGSPMWDTLDL- 345 (840)
Q Consensus 274 ~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~-~~~~l~~~a~~~~~~~~~~d~~--R~~---~~-~~s~l~eal~~- 345 (840)
.+.--+.+..+.+.||+|+.|...-.++.+..+. ...++..+|-.+ +..+ |.. .. ..+.+...++.
T Consensus 270 i~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~F------Lt~V~~r~~y~~~F~~~~vl~~i~e~V 343 (960)
T KOG1992|consen 270 IFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQF------LTSVSRRPHYAELFEGENVLAQICEKV 343 (960)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH------HHHHHhhhhhHhhhcchHHHHHHHHhh
Confidence 8888888889999999999997777766554432 222332221110 0000 000 00 11111222222
Q ss_pred -----HHhhcChhhHhh-HHHHHHHHHhccCCCchH-hHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHH
Q 003195 346 -----CINVVDTESLDQ-LVPHLARLVRSGIGLNTR-VGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKR 418 (840)
Q Consensus 346 -----~~~~~d~~~l~~-lvp~L~~~lk~~~~~~~r-~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~ 418 (840)
+++.-|++.++. -+-.+-.-++-+ +..+| .+|++.+..|+.++...+.+-.+..++.++.....+++.
T Consensus 344 vlpN~~lR~eDeElFED~pleYiRRDlEGs-DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~---- 418 (960)
T KOG1992|consen 344 VLPNLILREEDEELFEDNPLEYIRRDLEGS-DVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSG---- 418 (960)
T ss_pred cccccccchhhHHHhccCHHHHHHHhcccC-CcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCc----
Confidence 122234443332 222222222222 44444 478888888888876666666666666666655322221
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHhh-------------chhhhhhhHhhHhHHHHH
Q 003195 419 AFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSV-------------ASDVLSGYHAVIVPVIFI 485 (840)
Q Consensus 419 ~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~-------------~~~~f~~~~~~llP~l~~ 485 (840)
|+..+-.+..++.+++-. ..+.-.-+...++|-+..
T Consensus 419 -------------------------------nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s 467 (960)
T KOG1992|consen 419 -------------------------------NWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLS 467 (960)
T ss_pred -------------------------------cccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhcc
Confidence 111222233333333221 112222344556665532
Q ss_pred hhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCc---------chhh
Q 003195 486 SRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE---------SLSN 556 (840)
Q Consensus 486 ~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~---------~l~~ 556 (840)
.-..+.+-++.-..+-.-.+... --++++-.++|.+...|..++.-|-..||.++..+-...+. .+.|
T Consensus 468 ~~vn~~pilka~aIKy~~~FR~q---l~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap 544 (960)
T KOG1992|consen 468 PNVNEFPILKADAIKYIYTFRNQ---LGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAP 544 (960)
T ss_pred Cccccccchhhcccceeeeeccc---CChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcch
Confidence 11112233332211110001111 11356677888899999999999999999999988765544 5667
Q ss_pred hHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHH
Q 003195 557 YHHVLLESIMKEVPGRLWEGKDALLYAIGSIST 589 (840)
Q Consensus 557 ~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~ 589 (840)
|...++.-|.++++-..-..-+=+.+|+--++.
T Consensus 545 ~~~~ll~nLf~a~s~p~~~EneylmKaImRii~ 577 (960)
T KOG1992|consen 545 FVEILLTNLFKALSLPGKAENEYLMKAIMRIIS 577 (960)
T ss_pred HHHHHHHHHHHhccCCcccccHHHHHHHHHHHH
Confidence 777888888877743211222344555544444
No 44
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.67 E-value=2.4e-05 Score=90.86 Aligned_cols=291 Identities=13% Similarity=0.116 Sum_probs=199.3
Q ss_pred HHHHHHHhhcChhh-HhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCcccc-HHHHHHHHHHhHhhcCcHHHHH
Q 003195 341 DTLDLCINVVDTES-LDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPY-TSMLLRLLFPVVKEEKSAAAKR 418 (840)
Q Consensus 341 eal~~~~~~~d~~~-l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~-~~~lL~~Ll~~l~~d~~~~Vr~ 418 (840)
+.++.|+...+... .+.+.+.+..++.++ ...+|.-+++.+..++.......... -..+++.++..+ .|++..|.+
T Consensus 60 ~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~-~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~ 137 (503)
T PF10508_consen 60 DILKRLLSALSPDSLLPQYQPFLQRGLTHP-SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-RDPDLSVAK 137 (503)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-cCCcHHHHH
Confidence 34667776665443 577888888998876 56788888888877664332222212 246788899998 789999999
Q ss_pred HHHHHHHHhhhcCCHHHHHHH-----HHHHHHhhcC-ChhhhHHHHHHHHHHHhhchhhhhhhHh-hHhHHHHHhhcCCc
Q 003195 419 AFASACASVLKYATPSQAQKL-----IEETAALHID-DKNSQISCAILLKSYSSVASDVLSGYHA-VIVPVIFISRFEDD 491 (840)
Q Consensus 419 ~a~~Alg~l~~~~~~~~~~~l-----i~~l~~~~~~-d~~~r~~~~~~i~ai~~~~~~~f~~~~~-~llP~l~~~~~d~d 491 (840)
.++.++..+.+.-. ....+ ...+.+.... ++..|.-+..++..+++.+++.+....+ .+++.++....++|
T Consensus 138 ~A~~~L~~l~~~~~--~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dD 215 (503)
T PF10508_consen 138 AAIKALKKLASHPE--GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDD 215 (503)
T ss_pred HHHHHHHHHhCCch--hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCcc
Confidence 99999999986432 23333 5555555544 6677888888999999998888765553 37887777777766
Q ss_pred hHHHHHHHHHHHHhcCCChhhHHhhH--HHHHHHHHhhh----cCC-CHHHHHHHH-HHHHHHHHHhCcchhhhHHHHHH
Q 003195 492 KYVSDLFEELWEENTSGDRVTLQLYL--GEIVSLICEGI----ASS-SWSSKRKSA-KAICKLGEILGESLSNYHHVLLE 563 (840)
Q Consensus 492 ~~vr~~~~~i~~~~~~~~~~~i~~yl--~~Il~~l~~~L----~d~-s~~vR~~Aa-~~L~~La~~~~~~l~~~l~~llp 563 (840)
.-++-.+.++..++... +.+ ..|+ ..+++.+...+ .|+ ...+.-.+. +..|.++..-+..+...++.++.
T Consensus 216 iLvqlnalell~~La~~-~~g-~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~ 293 (503)
T PF10508_consen 216 ILVQLNALELLSELAET-PHG-LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLE 293 (503)
T ss_pred HHHHHHHHHHHHHHHcC-hhH-HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 66888888888887663 222 2333 22444444444 444 333443333 67777777644555556788888
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHHHHhcccc--cccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcC
Q 003195 564 SIMKEVPGRLWEGKDALLYAIGSISTSCHKD--ISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFR 637 (840)
Q Consensus 564 ~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~--~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~ 637 (840)
.+.+.+.....+.+..++++++.++...... +.....+-+..+++.+....+.....+|..++.+++.+...-+
T Consensus 294 ~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~ 369 (503)
T PF10508_consen 294 RLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGT 369 (503)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCC
Confidence 8888877777888999999999997533211 1112334567777777777777777999999999999986544
No 45
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=6.8e-05 Score=84.26 Aligned_cols=319 Identities=11% Similarity=0.041 Sum_probs=196.0
Q ss_pred HHHhHHHHHHhcccC-CchhHHHHHHHHHHHHHHHhhccccccch-HHHHHHHHHhccCchhHhHHHHHHhhhhcccchh
Q 003195 247 SMDIVLPFLLAEGIL-SKVDSISKASIGVVMKLVKGAGIAIRPHL-SDLVSCMLESLSSLEDQGLNYIELHAANAGIQTE 324 (840)
Q Consensus 247 ~l~~lLP~Ll~~gL~-s~~~evr~~al~~L~~la~~~g~~l~p~l-p~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~ 324 (840)
+...++|-+.+ .+. ++.+.+|..|..+|.+||......-+-++ ...+|.|+.++.+...++..-..|..++.
T Consensus 106 i~~G~v~~lV~-~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNI----- 179 (514)
T KOG0166|consen 106 IQSGVVPRLVE-FLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNI----- 179 (514)
T ss_pred HHcCcHHHHHH-HHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhcc-----
Confidence 44467777764 454 35588999999999999986443211111 25688899999988877766555555542
Q ss_pred hhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHh-ccCccccHHHHHHH
Q 003195 325 KLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKI-GMDIKPYTSMLLRL 403 (840)
Q Consensus 325 ~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~-~~~~~p~~~~lL~~ 403 (840)
+..||... +.++. ...++.|...+...........+.-+|+.|+... +..--.....+++.
T Consensus 180 ---------agds~~~R--d~vl~-------~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~ 241 (514)
T KOG0166|consen 180 ---------AGDSPDCR--DYVLS-------CGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPA 241 (514)
T ss_pred ---------ccCChHHH--HHHHh-------hcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 12221110 00111 1244555556554433344556777777777554 22111235688999
Q ss_pred HHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHH--H--HHHHHHHHHhhcC-ChhhhHHHHHHHHHHHhhchhhhhhhH-h
Q 003195 404 LFPVVKEEKSAAAKRAFASACASVLKYATPSQ--A--QKLIEETAALHID-DKNSQISCAILLKSYSSVASDVLSGYH-A 477 (840)
Q Consensus 404 Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~--~--~~li~~l~~~~~~-d~~~r~~~~~~i~ai~~~~~~~f~~~~-~ 477 (840)
|...+ .+.++.|..-++-|+.|+....++.. + ...++.+.+++.. +...+..+..++|.|.......-.-.. .
T Consensus 242 L~~ll-~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~ 320 (514)
T KOG0166|consen 242 LLRLL-HSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINS 320 (514)
T ss_pred HHHHH-hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhc
Confidence 99999 67889999999999999987665442 1 2456778877753 344565566666665443222111111 2
Q ss_pred hHhHHHHHhhc-CCchHHHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchh
Q 003195 478 VIVPVIFISRF-EDDKYVSDLFEELWEENTSGDRVTLQLYL-GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLS 555 (840)
Q Consensus 478 ~llP~l~~~~~-d~d~~vr~~~~~i~~~~~~~~~~~i~~yl-~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~ 555 (840)
..+|.+..... .+.+.+|..+.-+...++.|....++..+ ..++|.+...++....++|.-|+.+|+.++......-.
T Consensus 321 ~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi 400 (514)
T KOG0166|consen 321 GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQI 400 (514)
T ss_pred ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHH
Confidence 25565544444 34444776554555667777777776655 36899999999999999999999999999976543333
Q ss_pred hhH--HHHHHHHHHhcCCCCchhHHHHHHHHHHHHHh
Q 003195 556 NYH--HVLLESIMKEVPGRLWEGKDALLYAIGSISTS 590 (840)
Q Consensus 556 ~~l--~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~ 590 (840)
.|+ ..+++.+..-|.-.....=..+|.++..+...
T Consensus 401 ~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 401 KYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred HHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 332 33566666666433333345566666666553
No 46
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.56 E-value=0.00024 Score=80.74 Aligned_cols=372 Identities=12% Similarity=0.106 Sum_probs=211.4
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccC-----CchhHHHHHHHHHHH
Q 003195 202 TAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGIL-----SKVDSISKASIGVVM 276 (840)
Q Consensus 202 ~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~-----s~~~evr~~al~~L~ 276 (840)
|.++..+.|.....-..-.+.+..++.++ . ...++..++|.|+++ +. ..+.+.-...+.++.
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls----~--------~~~i~~~~~~~ll~k-l~~~~~~~~~~~~~~~il~tl~ 68 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALS----T--------SPQILETLSIRLLNK-LSIVCQSESSSDYCHAILSTLQ 68 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHH----C--------ChhHHHHHHHHHHHH-HHHHhcCCCChHHHHHHHHHHH
Confidence 45566666544321122223445554443 1 235677777777653 11 113455566778888
Q ss_pred HHHHhhccc-----cccchHH-HHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhc
Q 003195 277 KLVKGAGIA-----IRPHLSD-LVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVV 350 (840)
Q Consensus 277 ~la~~~g~~-----l~p~lp~-Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~ 350 (840)
.+.+..... ..-|... ++|.+++......+..- +.+...++ .+...+...++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~----------~~~~~~L~----------~~~~l~~~iv~~l 128 (415)
T PF12460_consen 69 SLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSS----------DLDDRVLE----------LLSRLINLIVRSL 128 (415)
T ss_pred HHHHhcccccccchHHHHHHhHHHHHHHHHHHhhccccc----------ccchHHHH----------HHHHHHHHHHHhC
Confidence 887765332 3444443 77777765532111000 00000011 0223445566777
Q ss_pred ChhhHhhHHHHHHHHHhc-----cCC-----Cc-hHhHHHHHHHHHHHHhccCcc-ccHHHHHHHHHHhHhhcCcHHHHH
Q 003195 351 DTESLDQLVPHLARLVRS-----GIG-----LN-TRVGVASFISLLVQKIGMDIK-PYTSMLLRLLFPVVKEEKSAAAKR 418 (840)
Q Consensus 351 d~~~l~~lvp~L~~~lk~-----~~~-----~~-~r~~a~~~l~~L~~~~~~~~~-p~~~~lL~~Ll~~l~~d~~~~Vr~ 418 (840)
+.+.-++++..+....-. +.+ .. ......-.+..+...+..+.. |....+++.++....+..+..+|.
T Consensus 129 ~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~ 208 (415)
T PF12460_consen 129 SPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRL 208 (415)
T ss_pred CHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHH
Confidence 766555555555554430 000 00 111222223333344444443 677788888888876666689999
Q ss_pred HHHHHHHHhhhcC-CHHHHHHHHHHHHHhh--cCChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHH
Q 003195 419 AFASACASVLKYA-TPSQAQKLIEETAALH--IDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVS 495 (840)
Q Consensus 419 ~a~~Alg~l~~~~-~~~~~~~li~~l~~~~--~~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr 495 (840)
.+...++.++-.. +++.+..+++.+.+.. ..++..|..+..++.-+.+..--+..+....++..++....+ +++.
T Consensus 209 ~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g 286 (415)
T PF12460_consen 209 AALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELG 286 (415)
T ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhH
Confidence 9999999988554 4445677777766655 234455555555555555443222223333333333322222 3333
Q ss_pred HHHHHHHHHhcCC--------ChhhH-----HhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcc-hhhhHHHH
Q 003195 496 DLFEELWEENTSG--------DRVTL-----QLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES-LSNYHHVL 561 (840)
Q Consensus 496 ~~~~~i~~~~~~~--------~~~~i-----~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~-l~~~l~~l 561 (840)
....+.++-+... ....+ +.+...++|.+.+...+.+...|..-..+|+.+.+..+.. +.++++++
T Consensus 287 ~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~L 366 (415)
T PF12460_consen 287 QQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTL 366 (415)
T ss_pred HHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 3332333222211 11122 3556777888888888777778898899999999998864 56789999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHH
Q 003195 562 LESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSS 612 (840)
Q Consensus 562 lp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~ 612 (840)
+|.|++++.-.+.+.+...++.|..++....+.+. +|++.+++.+.+
T Consensus 367 lPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~----~hl~sLI~~LL~ 413 (415)
T PF12460_consen 367 LPLLLQSLSLPDADVLLSSLETLKMILEEAPELIS----EHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHH----HHHHHHHHHHHh
Confidence 99999999888888999999999999887654333 577788877664
No 47
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=0.0025 Score=75.65 Aligned_cols=426 Identities=16% Similarity=0.186 Sum_probs=227.9
Q ss_pred HHHHHHHHHHHHHHhhCCCChhHHH----HHHHHHHHHHc-cC----CchhhhHHHHHHHHH-HHHHh-----------c
Q 003195 151 IDEHLDLIFDDLLIQSGSRLWRSRE----ASCLSLADIIQ-GR----KFDQVGKHLRRIWTA-AFRAM-----------D 209 (840)
Q Consensus 151 i~~~~~~Il~~Ll~~l~~~~wrvR~----aac~Al~~Ll~-~~----~~~~l~~~L~~l~~~-l~~~l-----------d 209 (840)
..+++..|++.+++.+. .||.+. -+-.-+.+.++ +. .+..+.||+.-|+.- +|-+| +
T Consensus 292 ~~n~~~~ile~~lk~l~--~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~ 369 (1010)
T KOG1991|consen 292 LKNFAQGILEVFLKILE--QWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEE 369 (1010)
T ss_pred HHHHHHHHHHHHHHHHH--HHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhc
Confidence 34455666666666553 244311 11111222222 22 245678888887764 45555 3
Q ss_pred cccHHHHH-------------HHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhc-----c--cCCchhHHHH
Q 003195 210 DIKETVRT-------------AGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAE-----G--ILSKVDSISK 269 (840)
Q Consensus 210 D~~~~VR~-------------aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~-----g--L~s~~~evr~ 269 (840)
|+.+.+|+ ||...+..+ .+ ..+++.++.+++|+.+- + ....+..-+.
T Consensus 370 DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~----~~---------KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkd 436 (1010)
T KOG1991|consen 370 DPYEYIRKKFDIFEDGYSPDTAALDFLTTL----VS---------KRGKETLPKILSFIVDILTRYKEASPPNKNPRQKD 436 (1010)
T ss_pred CHHHHHHhcCchhcccCCCcHHHHHHHHHH----HH---------hcchhhhhhHHHHHHHHHHhhcccCCCccChhhhh
Confidence 78888887 332222222 11 13456777777777641 1 1223456677
Q ss_pred HHHHHHHHHHHhhccccccchHHH----HHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHH
Q 003195 270 ASIGVVMKLVKGAGIAIRPHLSDL----VSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDL 345 (840)
Q Consensus 270 ~al~~L~~la~~~g~~l~p~lp~L----v~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~ 345 (840)
.|+.+++.+++...+. .||-..+ ++++.-.+++. ..|+ |..+ -+.+..
T Consensus 437 GAL~~vgsl~~~L~K~-s~~~~~mE~flv~hVfP~f~s~----~g~L-----------------rara------c~vl~~ 488 (1010)
T KOG1991|consen 437 GALRMVGSLASILLKK-SPYKSQMEYFLVNHVFPEFQSP----YGYL-----------------RARA------CWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHHHccC-CchHHHHHHHHHHHhhHhhcCc----hhHH-----------------HHHH------HHHHHH
Confidence 8999999999765432 3443332 22222222211 0111 1110 011222
Q ss_pred H--HhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcc---CccccHHHHHHHHHHhHhhcCcHHHHHHH
Q 003195 346 C--INVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGM---DIKPYTSMLLRLLFPVVKEEKSAAAKRAF 420 (840)
Q Consensus 346 ~--~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~---~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a 420 (840)
+ ++.-|...+.+.+....+.++++.++|+|+.|+-++..+...... .+.||.+.+++.++... ++.+...-...
T Consensus 489 ~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~-ne~End~Lt~v 567 (1010)
T KOG1991|consen 489 FSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLS-NEVENDDLTNV 567 (1010)
T ss_pred HHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH-HhcchhHHHHH
Confidence 1 233345566677777777888666999999999999888877663 48999999999999887 44433332222
Q ss_pred HHHHHHhhhcCCHH-------HHHHHHHHHHHhhc-------CChhhhHHHHHHHHHHHh------hchhhhhhhHhhHh
Q 003195 421 ASACASVLKYATPS-------QAQKLIEETAALHI-------DDKNSQISCAILLKSYSS------VASDVLSGYHAVIV 480 (840)
Q Consensus 421 ~~Alg~l~~~~~~~-------~~~~li~~l~~~~~-------~d~~~r~~~~~~i~ai~~------~~~~~f~~~~~~ll 480 (840)
.+ .++...+++ ..+.+......... ++++...+|.-++.++.. ..++.++.....++
T Consensus 568 me---~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l 644 (1010)
T KOG1991|consen 568 ME---KIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVL 644 (1010)
T ss_pred HH---HHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 22 222222222 12222222211111 122334444445554432 34667777777778
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHHhcCC--ChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhh--
Q 003195 481 PVIFISRFEDDKYVSDLFEELWEENTSG--DRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSN-- 556 (840)
Q Consensus 481 P~l~~~~~d~d~~vr~~~~~i~~~~~~~--~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~-- 556 (840)
|.+-.....+ +.+.+.++++-..+. ....+.+.+-.+++++.+...++..+-=....-++.+.+......+..
T Consensus 645 ~vi~~iL~~~---i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~ 721 (1010)
T KOG1991|consen 645 PVIGFILKND---ITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNP 721 (1010)
T ss_pred HHHHHHHHHh---hHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccc
Confidence 8664322211 223333333211111 112355666667777777777765544444555555555444343322
Q ss_pred -hHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhh--cCHHHHHHHHHHHH
Q 003195 557 -YHHVLLESIMKEVPGRL--WEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRK--KIKKYREAAFSCLE 630 (840)
Q Consensus 557 -~l~~llp~L~~~l~~r~--~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~R~~Al~~L~ 630 (840)
|...++.++.+.+.++. -+-.+.+.+-+..++.+|+..+. .++|..+......+++ ++-.+|.-++...-
T Consensus 722 ~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~d----q~iplf~~~a~~~l~~~~e~s~~~~~~leVvi 796 (1010)
T KOG1991|consen 722 DYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLD----QYIPLFLELALSRLTREVETSELRVMLLEVVI 796 (1010)
T ss_pred hHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHh----hHhHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 56777888888886653 23356677788888888886332 4566666666655545 56677877776643
No 48
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.51 E-value=0.0094 Score=73.58 Aligned_cols=604 Identities=14% Similarity=0.088 Sum_probs=297.8
Q ss_pred hhhchhhhhHHHH--HHhhcCCCCHhH-HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q 003195 108 DALKPHLRLLIPK--LVRFQYDPDKNV-QDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADI 184 (840)
Q Consensus 108 ~~l~~~l~~lvP~--L~~~~~Dp~~~V-R~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~L 184 (840)
..++-++.+|-++ -.+...-+++.+ +..+..|...+... ....+.|+.++.-++..++.+...+|.-|..++..+
T Consensus 766 n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~--r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~i 843 (1692)
T KOG1020|consen 766 NELKYILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHA--RSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMI 843 (1692)
T ss_pred HHHHHHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhh--hHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 3444444444444 334444444433 23456666666543 346677999999999999998899999999999999
Q ss_pred HccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCch
Q 003195 185 IQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKV 264 (840)
Q Consensus 185 l~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~ 264 (840)
++..+. .+ ..++.-...-+-+.|...+||+||..++..+.- +. .+.....-..+. .++.++.
T Consensus 844 ve~Dp~-vL--~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl-----~~---------~e~~~qyY~~i~-erIlDtg 905 (1692)
T KOG1020|consen 844 VEADPS-VL--SRPDVQEAVHGRLNDSSASVREAALDLVGRFVL-----SI---------PELIFQYYDQII-ERILDTG 905 (1692)
T ss_pred HhcChH-hh--cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhh-----cc---------HHHHHHHHHHHH-hhcCCCc
Confidence 876431 11 122444445556789999999999888766521 11 112222233333 2577777
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHH
Q 003195 265 DSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLD 344 (840)
Q Consensus 265 ~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~ 344 (840)
--||.-++.++-+|+...+.- +-.|++.-.++.-..+.|..+ .+. ..+++.
T Consensus 906 vsVRKRvIKIlrdic~e~pdf--~~i~~~cakmlrRv~DEEg~I------------------~kL---------v~etf~ 956 (1692)
T KOG1020|consen 906 VSVRKRVIKILRDICEETPDF--SKIVDMCAKMLRRVNDEEGNI------------------KKL---------VRETFL 956 (1692)
T ss_pred hhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHHHHhccchhHH------------------HHH---------HHHHHH
Confidence 889999999999999765442 223334444443333322211 100 001111
Q ss_pred HHH----h-hcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcC-cHHHHH
Q 003195 345 LCI----N-VVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEK-SAAAKR 418 (840)
Q Consensus 345 ~~~----~-~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~-~~~Vr~ 418 (840)
++. + ..|......-++...+ .+...-.....+.++++..+++.-..-+ ...+.+
T Consensus 957 klWF~p~~~~~d~~~~~~kI~~~~~--------------------vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~ 1016 (1692)
T KOG1020|consen 957 KLWFTPVPEVNDQPAKARKISLEVD--------------------VVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKP 1016 (1692)
T ss_pred HHhccCCCcccccHHHHHhhHHHHH--------------------HHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhH
Confidence 110 0 0111111111111111 1111112334567777766665431101 112222
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHhhc-----CChhh-hHHHHHHHHHHHhhchhhhh-hhHhhHhHHHHHhhcC-C
Q 003195 419 AFASACASVLKYATPSQAQKLIEETAALHI-----DDKNS-QISCAILLKSYSSVASDVLS-GYHAVIVPVIFISRFE-D 490 (840)
Q Consensus 419 ~a~~Alg~l~~~~~~~~~~~li~~l~~~~~-----~d~~~-r~~~~~~i~ai~~~~~~~f~-~~~~~llP~l~~~~~d-~ 490 (840)
-+-..+.+.+...- ..+.+.+.+.-. ++... -..+...+..+++.-|..+. .|.-.+.|++-...+. +
T Consensus 1017 v~~~~v~~~~~L~~----~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~ 1092 (1692)
T KOG1020|consen 1017 VALAKVTHVLNLLT----HCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIE 1092 (1692)
T ss_pred HHHhhcchHHHHHH----HHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchH
Confidence 22222222111110 111111111110 11222 35667788888888888777 7888788987543222 2
Q ss_pred chHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHH-------HH
Q 003195 491 DKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVL-------LE 563 (840)
Q Consensus 491 d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~l-------lp 563 (840)
+..+-....++++...|-.+..-..++..|=+-+++.+-......=..|..|+|.++.+.-..+. .+..+ ++
T Consensus 1093 ~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~-~v~~cf~~~~k~le 1171 (1692)
T KOG1020|consen 1093 EAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAK-VVKACFSCYLKLLE 1171 (1692)
T ss_pred HHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchH-HHHHHHHHHHHHHH
Confidence 22233334455555444222111234444545555555555666667788999999987544332 22223 33
Q ss_pred HHHHhcCCC----CchhHHHHHHHHHHHHHhcc-cccccCCC-------CchHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 003195 564 SIMKEVPGR----LWEGKDALLYAIGSISTSCH-KDISAEDP-------TTPFAIVDMVSSACRKKIKKYREAAFSCLEQ 631 (840)
Q Consensus 564 ~L~~~l~~r----~~~~Ke~vl~aL~~l~~~~~-~~~~~~~~-------~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~ 631 (840)
.+.....+. .++.=...+-.+|.|++.+. +.....+. ...+.++..+..-++.++..+|++|+..||.
T Consensus 1172 ~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~ 1251 (1692)
T KOG1020|consen 1172 VIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGF 1251 (1692)
T ss_pred HHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 333332222 22222334556777776332 10101111 1234555566667777789999999999999
Q ss_pred HHHHcCCcchHHhHHHHHHhh-cccccccCCCCCCCCCCccchhhhccccCCchhHHHhhhhhhHHhhchhhHHHhhhhh
Q 003195 632 VIKAFRDPKFFNIIFPLLFEM-CGSTALNKSGQVPLPSDASKEESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQEKNL 710 (840)
Q Consensus 632 l~~~~~~~~l~~~v~~i~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 710 (840)
++-.-|+=-....+..++... .++.+. ....+.++.+.. .-+++.-+
T Consensus 1252 ~ci~hp~l~~~~~v~nly~~ila~~n~~-------------------------~~~ki~~l~n~~-----~yL~eee~-- 1299 (1692)
T KOG1020|consen 1252 ICIQHPSLFTSREVLNLYDEILADDNSD-------------------------IKSKIQLLQNLE-----LYLLEEEK-- 1299 (1692)
T ss_pred HHhhCchhhhhHHHHHHHHHHHhhhccc-------------------------HHHHHHHHHHHH-----HHHHHHHH--
Confidence 998766522222233222222 222111 113445543221 01111110
Q ss_pred HHHHHhhcCCCCChHHHHHH-HHhhhcCCCCCCCccchhHHHHHHHhhhhhhhhhhcccchhhhhhHhhhHHHHHHH-HH
Q 003195 711 VQLFTISLSPGFPWTELCSR-LQKTLDDSAGTSPHAGISSLIQELFHTVSPKVVECISTVKIAQVHISASECLLEIC-KL 788 (840)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~vr~~a~~~l~~i~-~~ 788 (840)
-+-+ .+..|++...+ -..-+.....+.++ ...++.|-..|.+.+.+++ -.++-++|.-|+-.+--++ .|
T Consensus 1300 --~l~~---~~~~w~~~~k~edlkem~~v~sg~~s---~~~~~~i~Qlfl~~ILe~c-l~~d~~~r~~aikvl~liL~QG 1370 (1692)
T KOG1020|consen 1300 --KLRN---KGKNWTKSNKSEDLKEMLDVSSGMGS---SDGVSAIMQLFLDNILESC-LDRDLQVRLVAIKVLKLILNQG 1370 (1692)
T ss_pred --HHHh---cccchhhhhhHHHHHhhccccccccc---ccchHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHcc
Confidence 0111 57889966652 22222222222222 2224556666666664444 3467889999998776665 23
Q ss_pred h---hh-cccc-----------cccccchhhhhHHHHHhhhhHhHHHHHHHHH
Q 003195 789 F---RQ-ISSV-----------YSSNIGIKGELVHQCEMEKNMEAKSLLKKCI 826 (840)
Q Consensus 789 ~---~~-~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (840)
+ +. .||. +..--.+..|+-+.||.=-...+-.=++.|.
T Consensus 1371 LVhP~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY~gfv~sk~~~G~~lsf 1423 (1692)
T KOG1020|consen 1371 LVHPVHCVPTLIALETDPSQAIRHVADELLKEIDEKYEGFVFSKLSQGVQLSF 1423 (1692)
T ss_pred CCCccchhhhheeecCChHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHH
Confidence 3 22 4543 3333344555666666554444444344443
No 49
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.48 E-value=3.9e-06 Score=87.32 Aligned_cols=183 Identities=13% Similarity=0.073 Sum_probs=125.3
Q ss_pred CChhhhHHHHHHHHHHHhhc-----hhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHH
Q 003195 449 DDKNSQISCAILLKSYSSVA-----SDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSL 523 (840)
Q Consensus 449 ~d~~~r~~~~~~i~ai~~~~-----~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~ 523 (840)
.|++.|..+..-+.++.... .+.|.+++..+++.+.....|....|......++..+....+..+.+|.+.+++.
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~ 98 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPP 98 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 35666777777777776654 2333444444455554444433333444555677777766667799999999999
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHH-HHHHHHhcCCCCchhHHHHHHHHHHHHHhcc---cccccCC
Q 003195 524 ICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVL-LESIMKEVPGRLWEGKDALLYAIGSISTSCH---KDISAED 599 (840)
Q Consensus 524 l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~l-lp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~---~~~~~~~ 599 (840)
+.+.+.|...-+|..|..+|..++...+ +.+.+ .+.+..++..+++..|..++..+..++..++ ..+. .
T Consensus 99 Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~--~ 171 (228)
T PF12348_consen 99 LLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ--K 171 (228)
T ss_dssp HHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG----
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc--c
Confidence 9999999999999999999999998765 22344 8888889999999999999999999998887 2221 1
Q ss_pred CCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCC
Q 003195 600 PTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD 638 (840)
Q Consensus 600 ~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~ 638 (840)
...++.+.+.+.+.+.|.+..+|..|-.+++.+...+|+
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 123588999999999999999999999999999999886
No 50
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.46 E-value=0.006 Score=71.71 Aligned_cols=254 Identities=10% Similarity=0.064 Sum_probs=159.9
Q ss_pred CchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHH--H-HHHHHHHHHhh-
Q 003195 372 LNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQ--A-QKLIEETAALH- 447 (840)
Q Consensus 372 ~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~--~-~~li~~l~~~~- 447 (840)
.+.|++|++.+...+ -..-+.|+.+.++..++... .+.+.+|....+.++..++++.+... . .++.+..+..+
T Consensus 505 ~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~ 581 (1005)
T KOG2274|consen 505 PPVKISAVRAFCGYC--KVKVLLSLQPMILDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFL 581 (1005)
T ss_pred CchhHHHHHHHHhcc--CceeccccchHHHHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHH
Confidence 456677777665554 22356789999999999998 78889999999999999998876542 2 45566655544
Q ss_pred --cCChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCc----hHHHHHHHHHHHHhcCCChhhH-HhhHHHH
Q 003195 448 --IDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDD----KYVSDLFEELWEENTSGDRVTL-QLYLGEI 520 (840)
Q Consensus 448 --~~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d----~~vr~~~~~i~~~~~~~~~~~i-~~yl~~I 520 (840)
.+|+.+-..+-.++..++.. .+.++++...++|-+..-+.-+. ........++.+-++.+++..+ .......
T Consensus 582 k~s~DP~V~~~~qd~f~el~q~-~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~ 660 (1005)
T KOG2274|consen 582 KYSEDPQVASLAQDLFEELLQI-AANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYA 660 (1005)
T ss_pred HhcCCchHHHHHHHHHHHHHHH-HHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 47775555555666666553 34577888889998766554333 3455666677776665543322 3344556
Q ss_pred HHHHHhhh-cCCCHHHHHHHHHHHHHHHHHhCcchhh-------hHHHHHHHHHHhcCCCCchhHHH-HHHHHHHHHHhc
Q 003195 521 VSLICEGI-ASSSWSSKRKSAKAICKLGEILGESLSN-------YHHVLLESIMKEVPGRLWEGKDA-LLYAIGSISTSC 591 (840)
Q Consensus 521 l~~l~~~L-~d~s~~vR~~Aa~~L~~La~~~~~~l~~-------~l~~llp~L~~~l~~r~~~~Ke~-vl~aL~~l~~~~ 591 (840)
+|.+.++. -+.+-.+-+.|..||..++.+..+.+.. .+.-+|..+-+-|..++.+--.. +=.-+..|+.+.
T Consensus 661 FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a 740 (1005)
T KOG2274|consen 661 FPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHA 740 (1005)
T ss_pred hHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHH
Confidence 67776664 4566788889999999999874432221 14578888887776664332111 111123345545
Q ss_pred ccccccCCCCchHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHH
Q 003195 592 HKDISAEDPTTPFAIVDMVSSACR-KKIKKYREAAFSCLEQVI 633 (840)
Q Consensus 592 ~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~R~~Al~~L~~l~ 633 (840)
+..+. |.+.+|+++++..+. -.+.++-+.-+..+..+.
T Consensus 741 ~~el~----~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~ 779 (1005)
T KOG2274|consen 741 SSELG----PNLDQILRAVISRLQQAETLSVIQSLIMVFAHLV 779 (1005)
T ss_pred HHHhc----hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 54332 667888887776443 345555555555555444
No 51
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.45 E-value=7.7e-06 Score=97.25 Aligned_cols=284 Identities=11% Similarity=0.065 Sum_probs=184.1
Q ss_pred hHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCH---
Q 003195 357 QLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATP--- 433 (840)
Q Consensus 357 ~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~--- 433 (840)
-+++.+...++.-....+|.+|+..|..|......+. -++++++-++-.+ .|....||..+..++..++....+
T Consensus 422 l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~--~LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 422 LFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEV--KLDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred eeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHH--HHhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCc
Confidence 3667777777654455789999999988877665544 6788888888888 899999999999998887754422
Q ss_pred ---HHHHHHH-HHHHHhhcC-C-hhhhHHHHHHHHHHHhhchhhhhhhHh--------------------------hHh-
Q 003195 434 ---SQAQKLI-EETAALHID-D-KNSQISCAILLKSYSSVASDVLSGYHA--------------------------VIV- 480 (840)
Q Consensus 434 ---~~~~~li-~~l~~~~~~-d-~~~r~~~~~~i~ai~~~~~~~f~~~~~--------------------------~ll- 480 (840)
..+.+|+ |++..+.++ + ..+|.+.+..++.+++.+-. |-.+.. .+.
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r-Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~ 577 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR-FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH 577 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH-HHHHHHHHHhcccccCcccccccccccchHHHHHHH
Confidence 1234443 445444444 2 45789999999988876532 211111 110
Q ss_pred ---HHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcc-hhh
Q 003195 481 ---PVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES-LSN 556 (840)
Q Consensus 481 ---P~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~-l~~ 556 (840)
..+.....|+++.||....+-...++--.+. ..--+-|+..+..+|+|.+|.+|-+-+..|.-++-..|.. ++
T Consensus 578 ~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk--~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~s- 654 (1431)
T KOG1240|consen 578 TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK--EKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVS- 654 (1431)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh--cccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHH-
Confidence 0111111223333332211111111100000 0112446777889999999999998777776666555654 33
Q ss_pred hHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHc
Q 003195 557 YHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAF 636 (840)
Q Consensus 557 ~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~ 636 (840)
+-++|.|+++|.+.++-+=..+|.+|..+++.. .+.+ +++-+|++.+.-.+...|.=+|++++..+......+
T Consensus 655 --eyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~--ll~K---~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 655 --EYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG--LLRK---PAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred --HHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc--ccch---HHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 568999999999999887777777777776532 1222 677888888888777889999999999999999988
Q ss_pred CCcchHHhHHHHHHhhcc
Q 003195 637 RDPKFFNIIFPLLFEMCG 654 (840)
Q Consensus 637 ~~~~l~~~v~~i~~~l~~ 654 (840)
..-+++-++.|++..--+
T Consensus 728 s~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 728 SAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred hhhhheEEeehhhHHhhh
Confidence 876666666666654433
No 52
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.44 E-value=4.2e-06 Score=87.10 Aligned_cols=191 Identities=13% Similarity=0.107 Sum_probs=128.0
Q ss_pred hccccchhhhhhHHhHHHHHHHHh-----hhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHH
Q 003195 83 ANYQVSLNSKRGAAFGFSKIAKQA-----GDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDL 157 (840)
Q Consensus 83 a~~~~~w~sr~gA~~~l~~I~~~~-----~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~ 157 (840)
.+.+.+|..|..|.--+..++.+. .+.+-+.+.++++.+.....|.+..|.+.++.++..+....+..++.+++.
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 345567999999999998887766 233445677788889999999999999999999999987666678889999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHH-HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhc
Q 003195 158 IFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRI-WTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDV 236 (840)
Q Consensus 158 Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l-~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~ 236 (840)
++|.|+..++++..-+|++|..+|..+++..+ +.+.+ ...+...+.+..+.||..+...+..+. .....
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l----~~~~~ 164 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCS------YSPKILLEILSQGLKSKNPQVREECAEWLAIIL----EKWGS 164 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH----TT---
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH----HHccc
Confidence 99999999999988999999999999987654 23344 556666789999999998866665542 22120
Q ss_pred cccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccc
Q 003195 237 TLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIA 285 (840)
Q Consensus 237 ~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~ 285 (840)
. ...-.....++.+.|.+. +++.+.+.+||..|-.++..+.+..|..
T Consensus 165 ~-~~~l~~~~~~~~l~~~l~-~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 165 D-SSVLQKSAFLKQLVKALV-KLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp ---GGG--HHHHHHHHHHHH-HHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred h-HhhhcccchHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 0 000011224577888775 5788889999999999999998776653
No 53
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=0.019 Score=69.66 Aligned_cols=390 Identities=14% Similarity=0.129 Sum_probs=216.9
Q ss_pred cChh-hHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHh---------ccCccccHHHHHHHHHHhHhhc-----CcH
Q 003195 350 VDTE-SLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKI---------GMDIKPYTSMLLRLLFPVVKEE-----KSA 414 (840)
Q Consensus 350 ~d~~-~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~---------~~~~~p~~~~lL~~Ll~~l~~d-----~~~ 414 (840)
+|-+ .+..+.|.+...+.... ..|...|..|-.|+... -..+..|...+|+.+++...+. ...
T Consensus 510 ~Dl~~sF~~la~~l~~al~~~~--elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l 587 (1176)
T KOG1248|consen 510 VDLAESFTDLAPILGAALLKRP--ELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKIL 587 (1176)
T ss_pred ccHHHHHHHHHHHHHHHHhcch--HhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccH
Confidence 4543 37778888888776542 45666777776666553 1234567778888888887321 123
Q ss_pred HHHHHHHHHHH-HhhhcCCHHHHHHHHHHHHHhhcC-Chhh----hHHHHHHHHHHHhhchh-hhhhhHhhHhHHHHHhh
Q 003195 415 AAKRAFASACA-SVLKYATPSQAQKLIEETAALHID-DKNS----QISCAILLKSYSSVASD-VLSGYHAVIVPVIFISR 487 (840)
Q Consensus 415 ~Vr~~a~~Alg-~l~~~~~~~~~~~li~~l~~~~~~-d~~~----r~~~~~~i~ai~~~~~~-~f~~~~~~llP~l~~~~ 487 (840)
..|......+. ..+..++.+....|.+.+.++..+ |+.. +.+..+.+..++.+... ....++ .+.|..-
T Consensus 588 ~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e--- 663 (1176)
T KOG1248|consen 588 ASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFE--- 663 (1176)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhh---
Confidence 45666665555 444555555555665555555432 2222 23344555555555433 122222 2333211
Q ss_pred cCCchHHHHHHHHHHHHhcCC--ChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHH
Q 003195 488 FEDDKYVSDLFEELWEENTSG--DRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESI 565 (840)
Q Consensus 488 ~d~d~~vr~~~~~i~~~~~~~--~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L 565 (840)
+.....++.-.-++++++.++ +...+..++..|.+.+....++.+...|....+||..+.+..+.....+++..+|.+
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~Ev 743 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEV 743 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 112334443333667776665 445567888999999999999999999999999999999998866667788888888
Q ss_pred HHhcCCCCchhHHHHHHHHHHHHH--hcccccccCCCC---chHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCcc
Q 003195 566 MKEVPGRLWEGKDALLYAIGSIST--SCHKDISAEDPT---TPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPK 640 (840)
Q Consensus 566 ~~~l~~r~~~~Ke~vl~aL~~l~~--~~~~~~~~~~~~---~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~~ 640 (840)
+=.+++-+..-|...++.|..+.. ...+ ..+.| -++..+..|..-+-......+...+-.++.++..+.+.-
T Consensus 744 IL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d---~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~l 820 (1176)
T KOG1248|consen 744 ILSLKEVNVKARRNAFALLVFIGAIQSSLD---DGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNIL 820 (1176)
T ss_pred HHhcccccHHHHhhHHHHHHHHHHHHhhhc---ccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccc
Confidence 777776666667777877777773 2221 11223 233333333333222233333333555666665554411
Q ss_pred hHHhHHHHHHhhcccccccCCCCCCCCCCccchhhhccccCCchhHHHhhhhhhHHhhchhhHH-Hhh-hhhHHHHHhhc
Q 003195 641 FFNIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADESVSAPLDKVLDCVSSCIHVAHVNDII-EQE-KNLVQLFTISL 718 (840)
Q Consensus 641 l~~~v~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~l~~~~~~~~ 718 (840)
=...+..++..++.-=.. +...+....+..+..+ +...|+.. .++ ..|+|.++.=
T Consensus 821 d~~~l~~li~~V~~~L~s--------------------~sreI~kaAI~fikvl--v~~~pe~~l~~~~~~LL~sll~l- 877 (1176)
T KOG1248|consen 821 DDETLEKLISMVCLYLAS--------------------NSREIAKAAIGFIKVL--VYKFPEECLSPHLEELLPSLLAL- 877 (1176)
T ss_pred cHHHHHHHHHHHHHHHhc--------------------CCHHHHHHHHHHHHHH--HHcCCHHHHhhhHHHHHHHHHHH-
Confidence 122223333333211000 0112233455555444 34444444 454 4889998872
Q ss_pred CCCCChH---HHHHHHHhhhcCCCCCCCccchhHHHHHHHhhhhhhhhhhcccchhhhhhHhhh
Q 003195 719 SPGFPWT---ELCSRLQKTLDDSAGTSPHAGISSLIQELFHTVSPKVVECISTVKIAQVHISAS 779 (840)
Q Consensus 719 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~vr~~a~ 779 (840)
+....-+ ++...|..++++.+.. .+.+++.+..+..++ .|...+-...|.++.
T Consensus 878 s~d~k~~~r~Kvr~LlekLirkfg~~----eLe~~~pee~~klL~----nIRK~r~R~~rK~a~ 933 (1176)
T KOG1248|consen 878 SHDHKIKVRKKVRLLLEKLIRKFGAE----ELESFLPEEDMKLLT----NIRKRRRRKKRKKAM 933 (1176)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhCHH----HHHhhCHHHHHHHHH----HHHHHHHHhhhhhhh
Confidence 1221222 6666788888777655 556666666666664 443333344555554
No 54
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=6.1e-05 Score=82.62 Aligned_cols=198 Identities=14% Similarity=0.075 Sum_probs=143.9
Q ss_pred HHHHHHhhhcCC---chHHHHHHHHhc--cccchhhhhhHHhHHHHHHHHhhhhhc--hhhhhHHHHHHhhcCCCCHhHH
Q 003195 61 KELCNLANEMGQ---PDLIYKFMDLAN--YQVSLNSKRGAAFGFSKIAKQAGDALK--PHLRLLIPKLVRFQYDPDKNVQ 133 (840)
Q Consensus 61 k~l~~lA~~~g~---p~lv~~fm~la~--~~~~w~sr~gA~~~l~~I~~~~~~~l~--~~l~~lvP~L~~~~~Dp~~~VR 133 (840)
--++++++.++. +.+---+-.+.. .+..|+.|-+-.-+|+.+.... .+. +.+..++-.+-.-..||+..+|
T Consensus 198 ~g~trlqr~m~~~~~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~--~l~~~~lL~s~~~~la~ka~dp~a~~r 275 (533)
T KOG2032|consen 198 VGLTRLQRFMACVQDLEMGKILAQLLSSITSEKENGRITDIAFFAELKRPK--ELDKTGLLGSVLLSLANKATDPSAKSR 275 (533)
T ss_pred HHHHHHHHHHHhhCCccHHHHHhhcccccchhcccchHHHHHHHHHHhCcc--cccccccHHHHHHHHHHhccCchhHHH
Confidence 346777777654 222222222222 2334998887777777776644 444 5677788888888899999999
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCC-hhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhcccc
Q 003195 134 DAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRL-WRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIK 212 (840)
Q Consensus 134 ~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~-wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~ 212 (840)
+.++.+.....+..++....|...++..+..++-|.. -.|.--|..+|.-+++.....++.+|+.++--.+....+|.+
T Consensus 276 ~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~ 355 (533)
T KOG2032|consen 276 GMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSED 355 (533)
T ss_pred HHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcC
Confidence 9999999998888778888999999999999986654 355555566666666666667899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHH
Q 003195 213 ETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSI 267 (840)
Q Consensus 213 ~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~ev 267 (840)
..+|.+|..+...+.+++-+-++. ...+.+.+...|+++ -+.++.+.+
T Consensus 356 ~~~R~aa~~Lfg~L~~l~g~~~e~-----~Fte~v~k~~~~lll--hl~d~~p~v 403 (533)
T KOG2032|consen 356 DKMRAAAFVLFGALAKLAGGGWEE-----FFTEQVKKRLAPLLL--HLQDPNPYV 403 (533)
T ss_pred hhhhhhHHHHHHHHHHHcCCCchh-----hhHHHHHhcccccee--eeCCCChHH
Confidence 999999999999998776544432 133456668889887 366655544
No 55
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.29 E-value=4.2e-05 Score=91.21 Aligned_cols=143 Identities=8% Similarity=0.007 Sum_probs=103.3
Q ss_pred HhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHH-HHHHHHHHhhc-CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHH
Q 003195 406 PVVKEEKSAAAKRAFASACASVLKYATPSQAQ-KLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVI 483 (840)
Q Consensus 406 ~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~-~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l 483 (840)
..|.+|..+.||++..++++.|+.+++.+.-+ -++.+++..+. .|+..|.+-.+-|..++-+.|.+ ..-+-++|++
T Consensus 584 ~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl 661 (1431)
T KOG1240|consen 584 SSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLL 661 (1431)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHHHHHHH
Confidence 33347888999999999999999998866544 34677777665 36667766666666555555543 1234478999
Q ss_pred HHhhcCCchHHHHHHHHHHHHhcCCChhhH-HhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCc
Q 003195 484 FISRFEDDKYVSDLFEELWEENTSGDRVTL-QLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE 552 (840)
Q Consensus 484 ~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i-~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~ 552 (840)
.++..|.++-|-....+.+..++..+ .+ ++++-+|++.+.-.|-.++-=+|+.+...|..++..++.
T Consensus 662 ~Q~ltD~EE~Viv~aL~~ls~Lik~~--ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 662 QQGLTDGEEAVIVSALGSLSILIKLG--LLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred HHhccCcchhhHHHHHHHHHHHHHhc--ccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 99999988887655445554444321 22 578888888888888999888999999999999887764
No 56
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.00022 Score=75.20 Aligned_cols=400 Identities=12% Similarity=0.074 Sum_probs=211.1
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhh
Q 003195 156 DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCD 235 (840)
Q Consensus 156 ~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~ 235 (840)
++...-++..+.+.+..+..++|.|++++.-......+.-.+.-+=+-+.+.|.|.. .||.-+..-+++++.. +
T Consensus 84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v-evqcnaVgCitnLaT~-----d 157 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV-EVQCNAVGCITNLATF-----D 157 (550)
T ss_pred hhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc-EEEeeehhhhhhhhcc-----c
Confidence 344445666777888899999999999987544333333333333334455566654 4555555666666432 2
Q ss_pred ccccccchHHhHHHhHHHHHHhcccC-CchhHHHHHHHHHHHHHHHhhc--cccccchHHHHHHHHHhccCchhHhHHHH
Q 003195 236 VTLTEISDARQSMDIVLPFLLAEGIL-SKVDSISKASIGVVMKLVKGAG--IAIRPHLSDLVSCMLESLSSLEDQGLNYI 312 (840)
Q Consensus 236 ~~~~~~~~~~~~l~~lLP~Ll~~gL~-s~~~evr~~al~~L~~la~~~g--~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l 312 (840)
... ..-.....+.|.. + +. +.+..+|..+..+|.+|-.... ..+. + ..-+|.|..++++..+.+.-|.
T Consensus 158 ~nk----~kiA~sGaL~plt--r-LakskdirvqrnatgaLlnmThs~EnRr~LV-~-aG~lpvLVsll~s~d~dvqyyc 228 (550)
T KOG4224|consen 158 SNK----VKIARSGALEPLT--R-LAKSKDIRVQRNATGALLNMTHSRENRRVLV-H-AGGLPVLVSLLKSGDLDVQYYC 228 (550)
T ss_pred cch----hhhhhccchhhhH--h-hcccchhhHHHHHHHHHHHhhhhhhhhhhhh-c-cCCchhhhhhhccCChhHHHHH
Confidence 110 0111223344432 2 33 4566888999999999876432 1111 1 1226777778877777665444
Q ss_pred HHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccC
Q 003195 313 ELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMD 392 (840)
Q Consensus 313 ~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~ 392 (840)
+...++.+++ ...|...+ +.=++++|.|+++++++ +..+|..|.-.+..|+......
T Consensus 229 ttaisnIaVd----~~~Rk~La------------------qaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnlasdt~Yq 285 (550)
T KOG4224|consen 229 TTAISNIAVD----RRARKILA------------------QAEPKLVPALVDLMDDG-SDKVKCQAGLALRNLASDTEYQ 285 (550)
T ss_pred HHHhhhhhhh----HHHHHHHH------------------hcccchHHHHHHHHhCC-ChHHHHHHHHHHhhhcccchhh
Confidence 4333433221 11121111 11257999999999886 4556666777777776543221
Q ss_pred ccccH-HHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcC-CHHHH--HHHHHHHHHhhc--CChhhhHHHHHHHHHHHh
Q 003195 393 IKPYT-SMLLRLLFPVVKEEKSAAAKRAFASACASVLKYA-TPSQA--QKLIEETAALHI--DDKNSQISCAILLKSYSS 466 (840)
Q Consensus 393 ~~p~~-~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~-~~~~~--~~li~~l~~~~~--~d~~~r~~~~~~i~ai~~ 466 (840)
. |.. ..-+|.++..+.++--+.|.... .++..+.-.- +...+ ..++.++...+. ++++.+..+...+..++.
T Consensus 286 ~-eiv~ag~lP~lv~Llqs~~~plilasV-aCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 286 R-EIVEAGSLPLLVELLQSPMGPLILASV-ACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred h-HHHhcCCchHHHHHHhCcchhHHHHHH-HHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 1 111 12344555555222223332221 1222221111 11111 346667777664 456677778888887766
Q ss_pred hchhhhhhhH-hhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhH--HHHHHHHHhhhcCCCHHHHHHHHHHH
Q 003195 467 VASDVLSGYH-AVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYL--GEIVSLICEGIASSSWSSKRKSAKAI 543 (840)
Q Consensus 467 ~~~~~f~~~~-~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl--~~Il~~l~~~L~d~s~~vR~~Aa~~L 543 (840)
.+....+.++ .--+|.+.-..-|..-++++-....+..+.-. ...+.++ .-|++.++....|.+.++|-.||.+|
T Consensus 364 sse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL 441 (550)
T KOG4224|consen 364 SSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAAL 441 (550)
T ss_pred hhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHH
Confidence 4433222222 12345443333444444554333322222111 1223333 24788888888999999999999999
Q ss_pred HHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHH
Q 003195 544 CKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYRE 623 (840)
Q Consensus 544 ~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~ 623 (840)
+.+++... +|..+ .+.++ .|. +.|...+.+-.+.....+|.
T Consensus 442 ~Nlss~v~-----~Yarv--------------------------iEawd-------~P~-~gi~g~L~Rfl~S~~~tf~h 482 (550)
T KOG4224|consen 442 INLSSDVE-----HYARV--------------------------IEAWD-------HPV-QGIQGRLARFLASHELTFRH 482 (550)
T ss_pred HhhhhhhH-----HHHHH--------------------------HHHhc-------Ccc-hhHHHHHHHHHhhhHHHHHH
Confidence 99886431 22222 22111 122 45555666665555667778
Q ss_pred HHHHHHHHHHHHc
Q 003195 624 AAFSCLEQVIKAF 636 (840)
Q Consensus 624 ~Al~~L~~l~~~~ 636 (840)
.+.+.+..+++.-
T Consensus 483 ia~wTI~qLle~h 495 (550)
T KOG4224|consen 483 IARWTIQQLLEDH 495 (550)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888877654
No 57
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.006 Score=70.23 Aligned_cols=348 Identities=11% Similarity=0.137 Sum_probs=197.0
Q ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhcccc
Q 003195 207 AMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAI 286 (840)
Q Consensus 207 ~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l 286 (840)
-|++++|.||-...+.+..+ +-.+.++-++|.+.+ ++..+..=||..|+-++..|-+. +..+
T Consensus 107 DLQHPNEyiRG~TLRFLckL----------------kE~ELlepl~p~Ira-cleHrhsYVRrNAilaifsIyk~-~~~L 168 (948)
T KOG1058|consen 107 DLQHPNEYIRGSTLRFLCKL----------------KEPELLEPLMPSIRA-CLEHRHSYVRRNAILAIFSIYKN-FEHL 168 (948)
T ss_pred hccCchHhhcchhhhhhhhc----------------CcHHHhhhhHHHHHH-HHhCcchhhhhhhheeehhHHhh-hhhh
Confidence 36778888888754433332 134688889998874 68888899999999999999887 5567
Q ss_pred ccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhh-HHHHHHHH
Q 003195 287 RPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQ-LVPHLARL 365 (840)
Q Consensus 287 ~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~-lvp~L~~~ 365 (840)
-|-.|+|+..++..=.+..-..-.|+.+... |..|. ..=+..|+..+. .+.. +--.+++.
T Consensus 169 ~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~---------D~ErA--------l~Yl~~~idqi~--~~~~~LqlViVE~ 229 (948)
T KOG1058|consen 169 IPDAPELIESFLLTEQDPSCKRNAFLMLFTT---------DPERA--------LNYLLSNIDQIP--SFNDSLQLVIVEL 229 (948)
T ss_pred cCChHHHHHHHHHhccCchhHHHHHHHHHhc---------CHHHH--------HHHHHhhHhhcc--CccHHHHHHHHHH
Confidence 7889999998885433221111011111100 00000 000111222211 0101 11111122
Q ss_pred HhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHH-HHHHHHHHH
Q 003195 366 VRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQ-AQKLIEETA 444 (840)
Q Consensus 366 lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~-~~~li~~l~ 444 (840)
+++ .+.+.+. --.++++.++..| +..+++|+=+++ |.++...+++. +..-....+
T Consensus 230 Irk----------------v~~~~p~----~~~~~i~~i~~lL-~stssaV~fEaa---~tlv~lS~~p~alk~Aa~~~i 285 (948)
T KOG1058|consen 230 IRK----------------VCLANPA----EKARYIRCIYNLL-SSTSSAVIFEAA---GTLVTLSNDPTALKAAASTYI 285 (948)
T ss_pred HHH----------------HHhcCHH----HhhHHHHHHHHHH-hcCCchhhhhhc---ceEEEccCCHHHHHHHHHHHH
Confidence 221 1111111 1235677777777 445677764443 45555444432 222222233
Q ss_pred Hhhc--CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHH
Q 003195 445 ALHI--DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVS 522 (840)
Q Consensus 445 ~~~~--~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~ 522 (840)
++.. .|-+.+..+-.-+..+.......|..+.-.+++++ ..+|-+||.-..++-=+++.+ ..+.+++.
T Consensus 286 ~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvL----ss~dldvr~Ktldi~ldLvss------rNvediv~ 355 (948)
T KOG1058|consen 286 DLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVL----SSPDLDVRSKTLDIALDLVSS------RNVEDIVQ 355 (948)
T ss_pred HHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHc----CcccccHHHHHHHHHHhhhhh------ccHHHHHH
Confidence 3332 34455666666666666445556666665566643 457778887655554444443 24555666
Q ss_pred HHHhhhc-------CCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhccccc
Q 003195 523 LICEGIA-------SSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDI 595 (840)
Q Consensus 523 ~l~~~L~-------d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~ 595 (840)
.+.+-+. +..-+-|+.-.++|...+..++ .+..+++|.|.+-+.+.+..--..++..+.+.++..+
T Consensus 356 ~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp----~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p--- 428 (948)
T KOG1058|consen 356 FLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP----EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP--- 428 (948)
T ss_pred HHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh----HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc---
Confidence 6655542 3445678877788877776554 4567899999999998876655666766666666543
Q ss_pred ccCCCCchHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHcC
Q 003195 596 SAEDPTTPFAIVDMVSSACRK-KIKKYREAAFSCLEQVIKAFR 637 (840)
Q Consensus 596 ~~~~~~~~~~i~~~l~~~~~~-~~~~~R~~Al~~L~~l~~~~~ 637 (840)
.....|+..+...... ++.+.-+.|++-+|+++....
T Consensus 429 -----~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 429 -----NLRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred -----hHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 2345566655554332 466777889999999998664
No 58
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.21 E-value=0.044 Score=68.02 Aligned_cols=471 Identities=13% Similarity=0.090 Sum_probs=233.9
Q ss_pred hhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcc
Q 003195 108 DALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQG 187 (840)
Q Consensus 108 ~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~ 187 (840)
..+++||..|+-.| ..|.+.||..+..|...+++-++..+ ..+.+...+...+.|..--||++|..-+|.++-.
T Consensus 812 ~sfD~yLk~Il~~l----~e~~ialRtkAlKclS~ive~Dp~vL--~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~ 885 (1692)
T KOG1020|consen 812 QSFDPYLKLILSVL----GENAIALRTKALKCLSMIVEADPSVL--SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLS 885 (1692)
T ss_pred HhhHHHHHHHHHHh----cCchHHHHHHHHHHHHHHHhcChHhh--cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc
Confidence 45667777777666 79999999999999999997544333 2456667788889999999999999888877654
Q ss_pred CCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHH
Q 003195 188 RKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSI 267 (840)
Q Consensus 188 ~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~ev 267 (840)
.+ +-+..|+.+|... ..|..-+||+.+.+.++.+ | +.. .+....... .--++.| +.++...+
T Consensus 886 ~~-e~~~qyY~~i~er----IlDtgvsVRKRvIKIlrdi---c----~e~----pdf~~i~~~-cakmlrR-v~DEEg~I 947 (1692)
T KOG1020|consen 886 IP-ELIFQYYDQIIER----ILDTGVSVRKRVIKILRDI---C----EET----PDFSKIVDM-CAKMLRR-VNDEEGNI 947 (1692)
T ss_pred cH-HHHHHHHHHHHhh----cCCCchhHHHHHHHHHHHH---H----HhC----CChhhHHHH-HHHHHHH-hccchhHH
Confidence 32 3455666666555 4688889999886665543 2 211 112222222 2222212 22222226
Q ss_pred HHHHHHHHHHHHHh------------------------hccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccch
Q 003195 268 SKASIGVVMKLVKG------------------------AGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQT 323 (840)
Q Consensus 268 r~~al~~L~~la~~------------------------~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~ 323 (840)
+..+++++.++==. +-....-|.++++..++..-. .. ....+..+
T Consensus 948 ~kLv~etf~klWF~p~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~----------~~-~~~~~~~~ 1016 (1692)
T KOG1020|consen 948 KKLVRETFLKLWFTPVPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYL----------LK-TMKESVKP 1016 (1692)
T ss_pred HHHHHHHHHHHhccCCCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHH----------hh-hhhhhhhH
Confidence 66666666554211 111122222222222221100 00 00000000
Q ss_pred hhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHH
Q 003195 324 EKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRL 403 (840)
Q Consensus 324 ~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~ 403 (840)
.. .....+.++.+..|..+ ++.-.-...+....+-....+++..|..++...+..+.+ +.+-.
T Consensus 1017 v~-------~~~v~~~~~L~~~cl~~-------~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~---khv~t 1079 (1692)
T KOG1020|consen 1017 VA-------LAKVTHVLNLLTHCLVE-------KISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTK---KHVIT 1079 (1692)
T ss_pred HH-------HhhcchHHHHHHHHHHH-------HHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccH---HHHHH
Confidence 00 00111112222222211 111100011122222233447777777777766666653 33344
Q ss_pred HHHhHhhc----CcHHHHHHHHHHHHHhhhcC---CHHHHHHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhchh-----
Q 003195 404 LFPVVKEE----KSAAAKRAFASACASVLKYA---TPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASD----- 470 (840)
Q Consensus 404 Ll~~l~~d----~~~~Vr~~a~~Alg~l~~~~---~~~~~~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~----- 470 (840)
+.++|.++ ....+-.+.+.-+..++... +..-...+-+.|+.+.- .+-..-..+..|+++++....+
T Consensus 1080 L~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v 1159 (1692)
T KOG1020|consen 1080 LQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVV 1159 (1692)
T ss_pred hhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHH
Confidence 44444222 12233344444444444332 22223344444444432 1122223455778888764222
Q ss_pred --hhhhhHhhHhHHHHHhhcCCc------hH-HHHHHH-HHHHHh------cCCChh---hHHhhHHHHHHHHHhhhcCC
Q 003195 471 --VLSGYHAVIVPVIFISRFEDD------KY-VSDLFE-ELWEEN------TSGDRV---TLQLYLGEIVSLICEGIASS 531 (840)
Q Consensus 471 --~f~~~~~~llP~l~~~~~d~d------~~-vr~~~~-~i~~~~------~~~~~~---~i~~yl~~Il~~l~~~L~d~ 531 (840)
.|..|+. .++.+ ...++++ +. .|..|. +++.-. ...+.. ......+.++.++.-...+.
T Consensus 1160 ~~cf~~~~k-~le~~-k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~ 1237 (1692)
T KOG1020|consen 1160 KACFSCYLK-LLEVI-KSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDK 1237 (1692)
T ss_pred HHHHHHHHH-HHHHH-HhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhh
Confidence 2333333 33432 2222232 22 344443 333221 111111 11123344555555556677
Q ss_pred CHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCch-h-HHHHHHHHHHHHHhccccc------cc------
Q 003195 532 SWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWE-G-KDALLYAIGSISTSCHKDI------SA------ 597 (840)
Q Consensus 532 s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~-~-Ke~vl~aL~~l~~~~~~~~------~~------ 597 (840)
.-.+|+.|..++|-+|...+.-+.. +.+...+...+++..-+ + |-.++..+-.++.--...+ |.
T Consensus 1238 ~~~lR~~al~~Lg~~ci~hp~l~~~--~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~e 1315 (1692)
T KOG1020|consen 1238 DGELRRKALINLGFICIQHPSLFTS--REVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSE 1315 (1692)
T ss_pred hhHHHHHHHHHHHHHHhhCchhhhh--HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHH
Confidence 7999999999999999876665432 34444444445443322 2 5566666655543211100 10
Q ss_pred -----------CCCC-----chHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 003195 598 -----------EDPT-----TPFAIVDMVSSACRKKIKKYREAAFSCLEQVIK 634 (840)
Q Consensus 598 -----------~~~~-----~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~ 634 (840)
.... .++..++.+...|-+++..||..|+..++-+++
T Consensus 1316 dlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~ 1368 (1692)
T KOG1020|consen 1316 DLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILN 1368 (1692)
T ss_pred HHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 0111 456666677777778899999999999998876
No 59
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.029 Score=65.55 Aligned_cols=482 Identities=14% Similarity=0.145 Sum_probs=245.8
Q ss_pred CChHHHHHHHHHHHHHHHHhhCC---------CC----hhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhcccc
Q 003195 146 DPKRTIDEHLDLIFDDLLIQSGS---------RL----WRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIK 212 (840)
Q Consensus 146 d~~~~i~~~~~~Il~~Ll~~l~~---------~~----wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~ 212 (840)
|-+...+.|++.-|..-++-+.- .+ -.+|...|.-+ ++...+-.+.+.+++++.++....++.+..
T Consensus 223 DiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~-~LY~~kYeEef~~fl~~fv~~~W~LL~~~s 301 (960)
T KOG1992|consen 223 DIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIF-NLYATKYEEEFQPFLPDFVTATWNLLVSTS 301 (960)
T ss_pred cchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHH-HHHHHhhHHHHHhhHHHHHHHHHHHHHhcC
Confidence 55567788888888877776541 11 25677777644 455455557899999999988777776544
Q ss_pred HHHH-----HHHHHHHHHHHHH------------HHHhhh----ccccccchHHhHHHh-HHHHHHhcccCC-chhHHHH
Q 003195 213 ETVR-----TAGDKLCRSVTSL------------TIRLCD----VTLTEISDARQSMDI-VLPFLLAEGILS-KVDSISK 269 (840)
Q Consensus 213 ~~VR-----~aA~~~~~~l~~~------------~ir~~~----~~~~~~~~~~~~l~~-lLP~Ll~~gL~s-~~~evr~ 269 (840)
+..| ..|.+.+..+++. +-..|+ +.........++.+. -+-++- +.+.. +...-|.
T Consensus 302 ~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiR-RDlEGsDvdTRRR 380 (960)
T KOG1992|consen 302 PDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIR-RDLEGSDVDTRRR 380 (960)
T ss_pred CCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHH-HhcccCCcchhHH
Confidence 3332 2233333222110 000000 000000011111111 122221 23443 3445678
Q ss_pred HHHHHHHHHHHhhccccccchHHHHHHHHHhccCchh------HhHHHHHHhhh------hcccch--------hhh---
Q 003195 270 ASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLED------QGLNYIELHAA------NAGIQT--------EKL--- 326 (840)
Q Consensus 270 ~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep------~~~~~l~~~a~------~~~~~~--------~~~--- 326 (840)
.|++.+..+++.....+.+.+...+..+++..+...+ ...-|+..... +.|++. +-+
T Consensus 381 ~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ 460 (960)
T KOG1992|consen 381 AAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQ 460 (960)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHH
Confidence 8999999999998766777778888888875543211 12223332211 011100 000
Q ss_pred --HHHHHhhccCCcHHH--HHH---HHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHh---------c
Q 003195 327 --ENLRISIAKGSPMWD--TLD---LCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKI---------G 390 (840)
Q Consensus 327 --d~~R~~~~~~s~l~e--al~---~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~---------~ 390 (840)
.+.-...+...|+.. +|. .+-..++.+.+-.++|.++..++... ..+-.-|+.++..+..-. .
T Consensus 461 ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s-~vvhsYAA~aiEkil~vre~~~~~if~~ 539 (960)
T KOG1992|consen 461 ILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAES-RVVHSYAAIAIEKLLTVRENSNAKIFGA 539 (960)
T ss_pred hhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcc-hHHHHHHHHHHHhccccccCccccccch
Confidence 000000011122221 111 01122344455667888888876531 111224555555543221 2
Q ss_pred cCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHH---HHHHHHHHHHhhc---CC---hhh----hHHH
Q 003195 391 MDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQ---AQKLIEETAALHI---DD---KNS----QISC 457 (840)
Q Consensus 391 ~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~---~~~li~~l~~~~~---~d---~~~----r~~~ 457 (840)
.++.||...++.-++..+..+.. .=-+..++|+-+++....+.. ...++.++.+... .+ +.. =.+.
T Consensus 540 ~~iap~~~~ll~nLf~a~s~p~~-~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi 618 (960)
T KOG1992|consen 540 EDIAPFVEILLTNLFKALSLPGK-AENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESI 618 (960)
T ss_pred hhcchHHHHHHHHHHHhccCCcc-cccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 46779999999999988843222 333445555555555444332 2233333333331 22 221 2456
Q ss_pred HHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHH
Q 003195 458 AILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKR 537 (840)
Q Consensus 458 ~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~ 537 (840)
+.++...++..+.....+-..++|.+..-..++..|.-....++..-++...+.++.. .+.+++.-.++-..|+.+-
T Consensus 619 ~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~---~~~~l~~~lLsp~lW~r~g 695 (960)
T KOG1992|consen 619 GLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPD---SYSPLFPPLLSPNLWKRSG 695 (960)
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch---hHHHHHHHhcCHHHHhhcC
Confidence 6666666666666666677777876543333333333333333333332222122222 2333333344556687765
Q ss_pred H---HHHHHHHHHHHhCcchh--hhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHH
Q 003195 538 K---SAKAICKLGEILGESLS--NYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSS 612 (840)
Q Consensus 538 ~---Aa~~L~~La~~~~~~l~--~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~ 612 (840)
. ....+.++.+.....+. ..+..++..+.+-+..+..+.- -+.-|..++....... ..|++.+|...+.+
T Consensus 696 NipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~Dh~--GF~LLn~i~~~~~~~~---~~py~k~i~~llf~ 770 (960)
T KOG1992|consen 696 NIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKANDHH--GFYLLNTIIESIPPNE---LAPYMKQIFGLLFQ 770 (960)
T ss_pred CcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccchh--HHHHHHHHHhcCCHhh---hhHHHHHHHHHHHH
Confidence 3 33445555555444444 4578899999888887765432 2555555555443321 23788888888887
Q ss_pred HHhh-cCHHHHHHHHHHHHHHHHHcCCc
Q 003195 613 ACRK-KIKKYREAAFSCLEQVIKAFRDP 639 (840)
Q Consensus 613 ~~~~-~~~~~R~~Al~~L~~l~~~~~~~ 639 (840)
-++. |..+|.....--+..+.-..++.
T Consensus 771 RlqnskT~kf~k~~~vF~~~~~ik~~~~ 798 (960)
T KOG1992|consen 771 RLQNSKTEKFVKSFIVFFSLFTIKKGGL 798 (960)
T ss_pred HHhccCcHHHHHHHHHHHHHHHHHhhhH
Confidence 6654 56788888777777777666664
No 60
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.19 E-value=0.014 Score=65.22 Aligned_cols=256 Identities=13% Similarity=0.135 Sum_probs=138.5
Q ss_pred hhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHh
Q 003195 348 NVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASV 427 (840)
Q Consensus 348 ~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l 427 (840)
++++.+..+..+..|-..++.. ....|-.|.++|..|+...+..+.- +.+=++.|+ +|.|-.+ +..|+-.+
T Consensus 294 ~nv~~~~~~~~vs~L~~fL~s~-rv~~rFsA~Riln~lam~~P~kv~v-cN~evEsLI----sd~Nr~I---styAITtL 364 (898)
T COG5240 294 ENVGSQFVDQTVSSLRTFLKST-RVVLRFSAMRILNQLAMKYPQKVSV-CNKEVESLI----SDENRTI---STYAITTL 364 (898)
T ss_pred hccCHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhhCCceeee-cChhHHHHh----hcccccc---hHHHHHHH
Confidence 3455555555666555555543 4556779999999999988876632 222222222 5555444 45667778
Q ss_pred hhcCCHHHHHHHHHHHHHhhcC-ChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhc
Q 003195 428 LKYATPSQAQKLIEETAALHID-DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENT 506 (840)
Q Consensus 428 ~~~~~~~~~~~li~~l~~~~~~-d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~ 506 (840)
++...++.+..++..+.....+ .++.+..+.+++.+++...|..-..|++-+...+ +++..-+.+....++..++.
T Consensus 365 LKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L---~~eGg~eFK~~~Vdaisd~~ 441 (898)
T COG5240 365 LKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSL---LQEGGLEFKKYMVDAISDAM 441 (898)
T ss_pred HHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHH---HhcccchHHHHHHHHHHHHH
Confidence 8999999888887776655432 2456777888888887766654444444222211 11222223333333333332
Q ss_pred CCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhh--hHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 003195 507 SGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSN--YHHVLLESIMKEVPGRLWEGKDALLYAI 584 (840)
Q Consensus 507 ~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~--~l~~llp~L~~~l~~r~~~~Ke~vl~aL 584 (840)
...+.. -+..+.-++..+.|-.+ -+-+...|+-|.+-.+..-.| |+..+. .++--.+--+|.+++.||
T Consensus 442 ~~~p~s----kEraLe~LC~fIEDcey--~~I~vrIL~iLG~EgP~a~~P~~yvrhIy----NR~iLEN~ivRsaAv~aL 511 (898)
T COG5240 442 ENDPDS----KERALEVLCTFIEDCEY--HQITVRILGILGREGPRAKTPGKYVRHIY----NRLILENNIVRSAAVQAL 511 (898)
T ss_pred hhCchH----HHHHHHHHHHHHhhcch--hHHHHHHHHHhcccCCCCCCcchHHHHHH----HHHHHhhhHHHHHHHHHH
Confidence 222111 11233444444444322 223333444444433322111 222222 222222334588888888
Q ss_pred HHHHHhcccccccCCCCchH-HHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 003195 585 GSISTSCHKDISAEDPTTPF-AIVDMVSSACRKKIKKYREAAFSCLEQV 632 (840)
Q Consensus 585 ~~l~~~~~~~~~~~~~~~~~-~i~~~l~~~~~~~~~~~R~~Al~~L~~l 632 (840)
..++-...+ ++.+ .+..++-|++.+++..+|..|-.++..+
T Consensus 512 skf~ln~~d-------~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 512 SKFALNISD-------VVSPQSVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred HHhccCccc-------cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 777643332 4444 4555666788889999999998777654
No 61
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.0056 Score=70.86 Aligned_cols=435 Identities=13% Similarity=0.081 Sum_probs=202.1
Q ss_pred hhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHH
Q 003195 123 RFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWT 202 (840)
Q Consensus 123 ~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~ 202 (840)
+.++|||+-+|-++.++...+- +.-..+-+|-.+-+...|..++||+.|+.|+--|..-.+ + ....|.+++.
T Consensus 115 k~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~-e-~k~qL~e~I~ 186 (968)
T KOG1060|consen 115 KALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP-E-QKDQLEEVIK 186 (968)
T ss_pred hhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh-h-hHHHHHHHHH
Confidence 5567999999999988776542 233455666777788899999999999999999876432 2 2234445544
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhh
Q 003195 203 AAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGA 282 (840)
Q Consensus 203 ~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~ 282 (840)
.| |.|..+-|--+|.-+...+ |-..++- .......+-.+|. .+ +.|. +...+.+|.+-|+..
T Consensus 187 ~L---LaD~splVvgsAv~AF~ev---CPerldL-------IHknyrklC~ll~--dv--deWg-QvvlI~mL~RYAR~~ 248 (968)
T KOG1060|consen 187 KL---LADRSPLVVGSAVMAFEEV---CPERLDL-------IHKNYRKLCRLLP--DV--DEWG-QVVLINMLTRYARHQ 248 (968)
T ss_pred HH---hcCCCCcchhHHHHHHHHh---chhHHHH-------hhHHHHHHHhhcc--ch--hhhh-HHHHHHHHHHHHHhc
Confidence 44 8999998877665554433 2111110 0011111111111 01 2221 234455555444421
Q ss_pred ccccccchHHHHHHHHHhcc--CchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCc--------HHHHHHHHHhhcC-
Q 003195 283 GIAIRPHLSDLVSCMLESLS--SLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSP--------MWDTLDLCINVVD- 351 (840)
Q Consensus 283 g~~l~p~lp~Lv~~Ll~~ls--~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~--------l~eal~~~~~~~d- 351 (840)
=. .|.. +...++--. ...+...++.. ..|..+ .+.|+-.-...| ..=|+..+.-++.
T Consensus 249 l~--~P~~---~~~~~e~n~~~~~~~~~~~~~~---~P~~~d----~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP 316 (968)
T KOG1060|consen 249 LP--DPTV---VDSSLEDNGRSCNLKDKYNEIR---TPYVND----PDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAP 316 (968)
T ss_pred CC--Cccc---cccccccCcccccccccccccC---CCcccC----ccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCC
Confidence 10 1110 000000000 00000000000 000000 011111111111 1112222233333
Q ss_pred hhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcC
Q 003195 352 TESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYA 431 (840)
Q Consensus 352 ~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~ 431 (840)
...+..++-.|+.+++.. ..+|-..++.|..++.+.+.-|.||...+.-. .+|+ ..|..-=..-+..+ +
T Consensus 317 ~~~~~~i~kaLvrLLrs~--~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~-----ssDp-~~vk~lKleiLs~L---a 385 (968)
T KOG1060|consen 317 KNQVTKIAKALVRLLRSN--REVQYVVLQNIATISIKRPTLFEPHLKSFFVR-----SSDP-TQVKILKLEILSNL---A 385 (968)
T ss_pred HHHHHHHHHHHHHHHhcC--CcchhhhHHHHHHHHhcchhhhhhhhhceEee-----cCCH-HHHHHHHHHHHHHH---h
Confidence 235677888888888864 35677788899999999999999988764310 1222 22222222223333 3
Q ss_pred CHHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChh
Q 003195 432 TPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRV 511 (840)
Q Consensus 432 ~~~~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~ 511 (840)
+...+..++..+.. |..+.+ |..++.++.+|.+.+.. ....-+..+--+..-+...++-|.....-+...+...-+.
T Consensus 386 ~esni~~ILrE~q~-YI~s~d-~~faa~aV~AiGrCA~~-~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~ 462 (968)
T KOG1060|consen 386 NESNISEILRELQT-YIKSSD-RSFAAAAVKAIGRCASR-IGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPA 462 (968)
T ss_pred hhccHHHHHHHHHH-HHhcCc-hhHHHHHHHHHHHHHHh-hCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChH
Confidence 33334444444432 222222 24666666666655432 2222222222222222223444433333333333333222
Q ss_pred hHHhhHHHHHHHHHhhhcCCCHH-HHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHh
Q 003195 512 TLQLYLGEIVSLICEGIASSSWS-SKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTS 590 (840)
Q Consensus 512 ~i~~yl~~Il~~l~~~L~d~s~~-vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~ 590 (840)
. + .+|+.-+.+.+...... -|....-.+|.-|+. +....+.++..+.+.+.+....+|-.||.--+.+-.-
T Consensus 463 ~---h-~~ii~~La~lldti~vp~ARA~IiWLige~~e~----vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~ 534 (968)
T KOG1060|consen 463 E---H-LEILFQLARLLDTILVPAARAGIIWLIGEYCEI----VPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLT 534 (968)
T ss_pred H---H-HHHHHHHHHHhhhhhhhhhhceeeeeehhhhhh----cchhchHHHHHHHHhhccccchhhHHHHHhhhhheEe
Confidence 1 1 12333333333222111 122112234444443 2223678888999999988888897777554444221
Q ss_pred cccccccCCCCchHHHHHHHHHHHh-hcCHHHHHHH
Q 003195 591 CHKDISAEDPTTPFAIVDMVSSACR-KKIKKYREAA 625 (840)
Q Consensus 591 ~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~R~~A 625 (840)
+......++..+....+ +-+|..|-.|
T Consensus 535 --------~~~~~kll~~Yv~~L~~yD~sYDiRDRa 562 (968)
T KOG1060|consen 535 --------NIDQTKLLVQYVFELARYDLSYDIRDRA 562 (968)
T ss_pred --------chhhHHHHHHHHHHHhccCCCcchhHHH
Confidence 11234555555555443 3355555444
No 62
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.0057 Score=71.10 Aligned_cols=191 Identities=12% Similarity=0.042 Sum_probs=127.0
Q ss_pred cCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCC
Q 003195 411 EKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFED 490 (840)
Q Consensus 411 d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~ 490 (840)
+.+...|.-++.++|.++.. .|-+.|-++...+..+...-+.....|...++ .+..|+
T Consensus 305 ~~~~~LrvlainiLgkFL~n------------------~d~NirYvaLn~L~r~V~~d~~avqrHr~tIl----eCL~Dp 362 (866)
T KOG1062|consen 305 RSNSGLRVLAINILGKFLLN------------------RDNNIRYVALNMLLRVVQQDPTAVQRHRSTIL----ECLKDP 362 (866)
T ss_pred cCCchHHHHHHHHHHHHhcC------------------CccceeeeehhhHHhhhcCCcHHHHHHHHHHH----HHhcCC
Confidence 45778888888888877522 35566777777777777777777777776554 456788
Q ss_pred chHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcC
Q 003195 491 DKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVP 570 (840)
Q Consensus 491 d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~ 570 (840)
|..+|.-..++.-.++.. ..++ .+++-++++|...+.+.|-..+..+..+++++...=..|+++++.+|..+=.
T Consensus 363 D~SIkrralELs~~lvn~--~Nv~----~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~ 436 (866)
T KOG1062|consen 363 DVSIKRRALELSYALVNE--SNVR----VMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGD 436 (866)
T ss_pred cHHHHHHHHHHHHHHhcc--ccHH----HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhccc
Confidence 888876555555444443 2344 4555555666666889999999999999998877666688888888766533
Q ss_pred CCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHH--HHhhcCHHHHHHHHHHHHHHHHHc
Q 003195 571 GRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSS--ACRKKIKKYREAAFSCLEQVIKAF 636 (840)
Q Consensus 571 ~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~--~~~~~~~~~R~~Al~~L~~l~~~~ 636 (840)
-+++++...+.-++........ .-.+..+-.++.. ...-+...+.+-|.||+|++-.-+
T Consensus 437 ----~V~~dv~~nll~LIa~~~~e~~---~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdll 497 (866)
T KOG1062|consen 437 ----FVNDDVVNNLLRLIANAFQELH---EYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLL 497 (866)
T ss_pred ----ccchhhHHHHHHHHhcCCcchh---hHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHh
Confidence 3567778888888775532211 1112333333332 112345677999999999998544
No 63
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.07 E-value=2.4e-05 Score=71.94 Aligned_cols=110 Identities=18% Similarity=0.180 Sum_probs=88.3
Q ss_pred HHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhhh-hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHH
Q 003195 75 LIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLR-LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDE 153 (840)
Q Consensus 75 lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~-~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~ 153 (840)
++..+..+..+. .|..|++++.+++.++.+..+.....+. .++|.|..++.|+++.||..+..++..+..+++.....
T Consensus 8 ~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 8 GLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred ChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 566666666554 3899999999999999865433333444 78999999999999999999999999999887655555
Q ss_pred HHHH-HHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 003195 154 HLDL-IFDDLLIQSGSRLWRSREASCLSLADII 185 (840)
Q Consensus 154 ~~~~-Il~~Ll~~l~~~~wrvR~aac~Al~~Ll 185 (840)
..+. +++.++..+.+.+.++|+.++.+|.++.
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 5543 8899999999999999999999999875
No 64
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.00 E-value=4.2e-05 Score=70.32 Aligned_cols=110 Identities=16% Similarity=0.109 Sum_probs=85.9
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHH-HHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhH
Q 003195 117 LIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLD-LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGK 195 (840)
Q Consensus 117 lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~-~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~ 195 (840)
++|.|..+++|+++.+|..+..+...+..+.+.......+ .+++.++..+.++++++|..++.++.++....+.....-
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 6777777789999999999999999998875555555555 788889999999999999999999999987653211111
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 003195 196 HLRRIWTAAFRAMDDIKETVRTAGDKLCRSV 226 (840)
Q Consensus 196 ~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l 226 (840)
+-..+++.+.+.+++.+..+|+.+..++.++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 2224788888899999999999886666554
No 65
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.0017 Score=68.73 Aligned_cols=418 Identities=14% Similarity=0.062 Sum_probs=207.0
Q ss_pred hhhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCCh-H-HHHH--HHHHHHHHHHH
Q 003195 89 LNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPK-R-TIDE--HLDLIFDDLLI 164 (840)
Q Consensus 89 w~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~-~-~i~~--~~~~Il~~Ll~ 164 (840)
.+-.|.|+.+|.-|.++--..+.....+=+ +.....+.+.++.+++...+.+.-+.. + .+-+ -++. -+++
T Consensus 61 lnlqrsaalafAeitek~vr~Vsres~epv---l~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~---Li~q 134 (550)
T KOG4224|consen 61 LNLQRSAALAFAEITEKGVRRVSRESNEPV---LALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDL---LILQ 134 (550)
T ss_pred cccchHHHHHHHHHHHHHHHHhhhhhhhHH---HHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHH---HHHH
Confidence 456678888888776654222211111112 223589999999999888886654321 1 1111 1233 1334
Q ss_pred hhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchH
Q 003195 165 QSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDA 244 (840)
Q Consensus 165 ~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~ 244 (840)
.|+| ...||..+...+-+|..-.+...-......+ ..+.|+-.-.+..||.-|..++-++...- + ..-
T Consensus 135 mmtd-~vevqcnaVgCitnLaT~d~nk~kiA~sGaL-~pltrLakskdirvqrnatgaLlnmThs~----E------nRr 202 (550)
T KOG4224|consen 135 MMTD-GVEVQCNAVGCITNLATFDSNKVKIARSGAL-EPLTRLAKSKDIRVQRNATGALLNMTHSR----E------NRR 202 (550)
T ss_pred hcCC-CcEEEeeehhhhhhhhccccchhhhhhccch-hhhHhhcccchhhHHHHHHHHHHHhhhhh----h------hhh
Confidence 4444 4455555444455554321110000111111 12233233333456665544443332110 0 000
Q ss_pred HhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHh--hccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccc
Q 003195 245 RQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKG--AGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQ 322 (840)
Q Consensus 245 ~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~--~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~ 322 (840)
.-+-.--+|+|.+ -+.+.+.++|.+++.++++|+-. ..+-+...=|.++|.|.+++.+..+.+ .+....+-
T Consensus 203 ~LV~aG~lpvLVs-ll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kv-kcqA~lAL----- 275 (550)
T KOG4224|consen 203 VLVHAGGLPVLVS-LLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKV-KCQAGLAL----- 275 (550)
T ss_pred hhhccCCchhhhh-hhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHH-HHHHHHHH-----
Confidence 0111234888875 35667889999999999999863 345566777889999999998766544 22221111
Q ss_pred hhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHH-HHH
Q 003195 323 TEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTS-MLL 401 (840)
Q Consensus 323 ~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~-~lL 401 (840)
|.-+...+...+.+ -..-+|.++++++++.+ +.-.+..-|+-.+...-+... +..+ -++
T Consensus 276 -------rnlasdt~Yq~eiv-----------~ag~lP~lv~Llqs~~~-plilasVaCIrnisihplNe~-lI~dagfl 335 (550)
T KOG4224|consen 276 -------RNLASDTEYQREIV-----------EAGSLPLLVELLQSPMG-PLILASVACIRNISIHPLNEV-LIADAGFL 335 (550)
T ss_pred -------hhhcccchhhhHHH-----------hcCCchHHHHHHhCcch-hHHHHHHHHHhhcccccCccc-ceecccch
Confidence 10001111000100 01234888888877633 333333444433333322222 2233 467
Q ss_pred HHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHH--HH--HHHHHHHHHhhcCCh-hh--hHHHHHHHHHHHhhchhhhhh
Q 003195 402 RLLFPVVKEEKSAAAKRAFASACASVLKYATPS--QA--QKLIEETAALHIDDK-NS--QISCAILLKSYSSVASDVLSG 474 (840)
Q Consensus 402 ~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~--~~--~~li~~l~~~~~~d~-~~--r~~~~~~i~ai~~~~~~~f~~ 474 (840)
+++...|..-.|.++.-.+...+..+....... .+ ..-++++..+..+.+ ++ +.+++.+.-++. +.++.
T Consensus 336 ~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~----d~~k~ 411 (550)
T KOG4224|consen 336 RPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN----DNDKE 411 (550)
T ss_pred hHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc----cccHH
Confidence 777777754567778888888887776432211 11 123556666654322 33 444444444443 33443
Q ss_pred hHhh--HhHHHHHhhcCCchHHHHHHHHHHHHhcCCCh------hhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 003195 475 YHAV--IVPVIFISRFEDDKYVSDLFEELWEENTSGDR------VTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKL 546 (840)
Q Consensus 475 ~~~~--llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~------~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~L 546 (840)
++-. ++|.+.--..+..++||......+..+.+... +....-...|-..+.+.+.+....+|+.+.-+|-.|
T Consensus 412 ~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qL 491 (550)
T KOG4224|consen 412 ALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQL 491 (550)
T ss_pred HHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3322 45544333455666776543333322222110 000001133444555666777777888888888888
Q ss_pred HHHhCcchh
Q 003195 547 GEILGESLS 555 (840)
Q Consensus 547 a~~~~~~l~ 555 (840)
.......+.
T Consensus 492 le~h~~~~~ 500 (550)
T KOG4224|consen 492 LEDHDLPLT 500 (550)
T ss_pred HHhCCccHH
Confidence 776544443
No 66
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.94 E-value=1.9e-05 Score=62.24 Aligned_cols=53 Identities=21% Similarity=0.218 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 003195 171 WRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCR 224 (840)
Q Consensus 171 wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~ 224 (840)
|+||++|+.+|+.+.+. ..+.+.+|++++++.+...++|.++.||.+|..++.
T Consensus 1 p~vR~~A~~aLg~l~~~-~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEG-CPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHHCTTTT-THHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHhcc-cHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 89999999999996544 456789999999999999999999999999865554
No 67
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.1 Score=61.63 Aligned_cols=340 Identities=12% Similarity=0.042 Sum_probs=181.8
Q ss_pred hhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHh-ccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHH
Q 003195 264 VDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLES-LSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDT 342 (840)
Q Consensus 264 ~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~-ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~ea 342 (840)
++..-++++-.+..++...|....+++|.++...-.. ++...|+.+ +..++.
T Consensus 480 s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~---------------------------~Tss~~ 532 (982)
T KOG2022|consen 480 SLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLL---------------------------STSSDL 532 (982)
T ss_pred HHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHH---------------------------HHHHHH
Confidence 4677778888999999999988778765554444321 222222211 112455
Q ss_pred HHHHHhhcChh--hHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhh-cCcHHHHHH
Q 003195 343 LDLCINVVDTE--SLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKE-EKSAAAKRA 419 (840)
Q Consensus 343 l~~~~~~~d~~--~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~-d~~~~Vr~~ 419 (840)
++.+..++.+. .+..-+|.|.+++..+ ..-..+...+..|++.++.++.||.+.++..+-..+.. .-...+|..
T Consensus 533 igs~s~~l~e~P~~ln~sl~~L~~~Lh~s---k~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~k 609 (982)
T KOG2022|consen 533 IGSLSNWLGEHPMYLNPSLPLLFQGLHNS---KESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLK 609 (982)
T ss_pred HHHHHHHHhcCCcccCchHHHHHHHhcCc---hHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHH
Confidence 67777776543 3567788888887543 12234556688899999999999999999998888721 123578999
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHhhc-----------CChhhhHHHHHHHHHHHhhc--------------hh-h--
Q 003195 420 FASACASVLKYATPSQAQKLIEETAALHI-----------DDKNSQISCAILLKSYSSVA--------------SD-V-- 471 (840)
Q Consensus 420 a~~Alg~l~~~~~~~~~~~li~~l~~~~~-----------~d~~~r~~~~~~i~ai~~~~--------------~~-~-- 471 (840)
...++|+++....++.+.+|+..+.+.++ +++..+...+..+..++.-. +. +
T Consensus 610 lm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~ 689 (982)
T KOG2022|consen 610 LMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREE 689 (982)
T ss_pred HHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhcc
Confidence 99999999988888777777766665542 23444443333333332211 00 0
Q ss_pred ------hhhhHhhHhHHHHHh--hcCCchHHHHHHHHHHHHhcCCChhhH-HhhHHHHHHHHHhhhcCCCHHHHHHHHHH
Q 003195 472 ------LSGYHAVIVPVIFIS--RFEDDKYVSDLFEELWEENTSGDRVTL-QLYLGEIVSLICEGIASSSWSSKRKSAKA 542 (840)
Q Consensus 472 ------f~~~~~~llP~l~~~--~~d~d~~vr~~~~~i~~~~~~~~~~~i-~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~ 542 (840)
.-..+.+++|++-.. +.-.+.+|.+....+...-+......+ .++++++.+.+.+....+.. +...
T Consensus 690 ~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a-----~tl~ 764 (982)
T KOG2022|consen 690 PFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLA-----VTLS 764 (982)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchHH-----HHHH
Confidence 012334455544221 212233343332222221122222234 78899999999886655432 2222
Q ss_pred HHHHHHH--hC-cchhhhHHH----HHHHHHHhcCCCC----chhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHH
Q 003195 543 ICKLGEI--LG-ESLSNYHHV----LLESIMKEVPGRL----WEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVS 611 (840)
Q Consensus 543 L~~La~~--~~-~~l~~~l~~----llp~L~~~l~~r~----~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~ 611 (840)
++..+.. ++ +.-.|..++ .+..-+..+.+.. .|.=+..+..+..+.++.++.+......+-.-|.....
T Consensus 765 l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~ 844 (982)
T KOG2022|consen 765 LIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAF 844 (982)
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHH
Confidence 3322221 11 111221222 1222222222222 33333333333333433333221111122333333555
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHcCC
Q 003195 612 SACRKKIKKYREAAFSCLEQVIKAFRD 638 (840)
Q Consensus 612 ~~~~~~~~~~R~~Al~~L~~l~~~~~~ 638 (840)
+.++...+..-++|..-+.+++....+
T Consensus 845 ~ll~~pE~~~i~aa~qF~t~~~~~~~s 871 (982)
T KOG2022|consen 845 ILLNSPEPTTIRAASQFLTALATYATS 871 (982)
T ss_pred HhcCCCccHHHHHHHHHHHHHHhhccc
Confidence 666666666666777777777776655
No 68
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.067 Score=61.78 Aligned_cols=256 Identities=13% Similarity=0.154 Sum_probs=145.1
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHH
Q 003195 199 RIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKL 278 (840)
Q Consensus 199 ~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~l 278 (840)
+|-+-+|.+|...++.||+-|..++ -++++++ .+.+.-..|-|.++ |.++++.|...|..++.++
T Consensus 144 DLa~Dv~tLL~sskpYvRKkAIl~l---ykvFLkY-----------PeAlr~~FprL~Ek-LeDpDp~V~SAAV~VICEL 208 (877)
T KOG1059|consen 144 DLADDVFTLLNSSKPYVRKKAILLL---YKVFLKY-----------PEALRPCFPRLVEK-LEDPDPSVVSAAVSVICEL 208 (877)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHH---HHHHHhh-----------hHhHhhhHHHHHHh-ccCCCchHHHHHHHHHHHH
Confidence 5666677788999999999775443 3344444 23556678888764 8889999999999999999
Q ss_pred HHhhccccccchHHHHHHHHHhccCchhHhHH-HHHH---------hhhhcccchhhhHHHHHhhccCCcHHHHHHHHHh
Q 003195 279 VKGAGIAIRPHLSDLVSCMLESLSSLEDQGLN-YIEL---------HAANAGIQTEKLENLRISIAKGSPMWDTLDLCIN 348 (840)
Q Consensus 279 a~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~-~l~~---------~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~ 348 (840)
|++.++..-|..|.+...+.. +...|++- .+-. +.++- --+.+-+.--+-+..|-++|+++.++.
T Consensus 209 ArKnPknyL~LAP~ffklltt---SsNNWmLIKiiKLF~aLtplEPRLgKK--Lieplt~li~sT~AmSLlYECvNTVVa 283 (877)
T KOG1059|consen 209 ARKNPQNYLQLAPLFYKLLVT---SSNNWVLIKLLKLFAALTPLEPRLGKK--LIEPITELMESTVAMSLLYECVNTVVA 283 (877)
T ss_pred HhhCCcccccccHHHHHHHhc---cCCCeehHHHHHHHhhccccCchhhhh--hhhHHHHHHHhhHHHHHHHHHHHHhee
Confidence 999888666655544333321 11223211 0000 11110 001111111111222334555555443
Q ss_pred h-----c-C-hhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHH
Q 003195 349 V-----V-D-TESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFA 421 (840)
Q Consensus 349 ~-----~-d-~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~ 421 (840)
. . | ......-+.+|-..+.++ +.+-|--.+-+++.++..++..+..|-+-+++ ++ +|.++.||-++.
T Consensus 284 ~s~s~g~~d~~asiqLCvqKLr~fieds-DqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlr----cL-~DkD~SIRlrAL 357 (877)
T KOG1059|consen 284 VSMSSGMSDHSASIQLCVQKLRIFIEDS-DQNLKYLGLLAMSKILKTHPKAVQAHKDLILR----CL-DDKDESIRLRAL 357 (877)
T ss_pred ehhccCCCCcHHHHHHHHHHHhhhhhcC-CccHHHHHHHHHHHHhhhCHHHHHHhHHHHHH----Hh-ccCCchhHHHHH
Confidence 3 1 1 122334455655556555 66777767777777777777766666655554 44 799999997665
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhhc--CChhhhHHHHHHHHHHHhhc----hhhhhhhHhhHhHHH
Q 003195 422 SACASVLKYATPSQAQKLIEETAALHI--DDKNSQISCAILLKSYSSVA----SDVLSGYHAVIVPVI 483 (840)
Q Consensus 422 ~Alg~l~~~~~~~~~~~li~~l~~~~~--~d~~~r~~~~~~i~ai~~~~----~~~f~~~~~~llP~l 483 (840)
.-+-.+ .+.+.+..++..|+.-.. ++...|-....-+-+++... --.|..|...++-+.
T Consensus 358 dLl~gm---VskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa 422 (877)
T KOG1059|consen 358 DLLYGM---VSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELA 422 (877)
T ss_pred HHHHHH---hhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHH
Confidence 554443 456666666666665543 33456654443333343322 235777777665544
No 69
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.00056 Score=71.58 Aligned_cols=294 Identities=14% Similarity=0.157 Sum_probs=170.6
Q ss_pred chHHHHHHHhhhcCCc-------hHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhh-hhHHHHHHhhcCCCC
Q 003195 58 STYKELCNLANEMGQP-------DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHL-RLLIPKLVRFQYDPD 129 (840)
Q Consensus 58 styk~l~~lA~~~g~p-------~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l-~~lvP~L~~~~~Dp~ 129 (840)
++||-=..|+.+-.+| ..|++|+.+..++..---.--|+-++..|++|...+-+-.+ ...+|.++..+++++
T Consensus 91 av~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~ 170 (526)
T COG5064 91 AVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTE 170 (526)
T ss_pred HHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCch
Confidence 4566556677777776 36888888773322111112578899999998854433222 156888888889999
Q ss_pred HhHHHHHHHHHHHhccCChHHHHHHHH-HHHHHHHHhhCCCCh--hHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHH
Q 003195 130 KNVQDAMAHIWKSLVADPKRTIDEHLD-LIFDDLLIQSGSRLW--RSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFR 206 (840)
Q Consensus 130 ~~VR~a~~~iw~~Lv~d~~~~i~~~~~-~Il~~Ll~~l~~~~w--rvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~ 206 (840)
..||.-+.-..+.+..|+....+-.+. -.|+-++..+.+... ..-..+.+.|.++..|..++.--.-..+.+|.|++
T Consensus 171 ~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~K 250 (526)
T COG5064 171 DDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAK 250 (526)
T ss_pred HHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHH
Confidence 999999877778888887543332221 133334444433322 34457889999999997666555666777788887
Q ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHh-HHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccc
Q 003195 207 AMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDI-VLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIA 285 (840)
Q Consensus 207 ~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~-lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~ 285 (840)
++---.+.|-. .+|++++-+. .++.+..+.+++. +.+-|++ -|.+++..++.=++..+++|+......
T Consensus 251 Liys~D~evlv---DA~WAiSYls-------Dg~~E~i~avld~g~~~RLvE-lLs~~sa~iqtPalR~vGNIVTG~D~Q 319 (526)
T COG5064 251 LIYSRDPEVLV---DACWAISYLS-------DGPNEKIQAVLDVGIPGRLVE-LLSHESAKIQTPALRSVGNIVTGSDDQ 319 (526)
T ss_pred HHhhcCHHHHH---HHHHHHHHhc-------cCcHHHHHHHHhcCCcHHHHH-HhcCccccccCHHHHhhcCeeecCccc
Confidence 77544444433 3466654321 1222222333332 2333443 345566677778888899988653321
Q ss_pred cccch-HHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHH
Q 003195 286 IRPHL-SDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLAR 364 (840)
Q Consensus 286 l~p~l-p~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~ 364 (840)
-.-.+ -..++.|...|++.+.....-.||...+. +.... +-+..+ +| ..++|.|+.
T Consensus 320 TqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNI--TAGnt--------------eqiqav---id----~nliPpLi~ 376 (526)
T COG5064 320 TQVIINCGALKAFRSLLSSPKENIRKEACWTISNI--TAGNT--------------EQIQAV---ID----ANLIPPLIH 376 (526)
T ss_pred eehheecccHHHHHHHhcChhhhhhhhhheeeccc--ccCCH--------------HHHHHH---Hh----cccchHHHH
Confidence 10000 02345555567766665555566655441 00000 001111 11 247788888
Q ss_pred HHhccCCCchHhHHHHHHHHHH
Q 003195 365 LVRSGIGLNTRVGVASFISLLV 386 (840)
Q Consensus 365 ~lk~~~~~~~r~~a~~~l~~L~ 386 (840)
++... +..+|.+||-+++...
T Consensus 377 lls~a-e~k~kKEACWAisNat 397 (526)
T COG5064 377 LLSSA-EYKIKKEACWAISNAT 397 (526)
T ss_pred HHHHH-HHHHHHHHHHHHHhhh
Confidence 88765 6677888888887654
No 70
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.0011 Score=77.08 Aligned_cols=184 Identities=10% Similarity=0.058 Sum_probs=137.2
Q ss_pred CCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc--
Q 003195 371 GLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-- 448 (840)
Q Consensus 371 ~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~-- 448 (840)
..++|.+++..+..+++.-...=.-+.++++...+..+ .|.+..|.=.++.++..+++..+++ +++.+.+.|.
T Consensus 740 qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy~e~----il~dL~e~Y~s~ 814 (982)
T KOG4653|consen 740 QVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVYPED----ILPDLSEEYLSE 814 (982)
T ss_pred cccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhcchh----hHHHHHHHHHhc
Confidence 57889999999999987443333346779999999999 7888999999999999998876654 4455555553
Q ss_pred ---CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHH
Q 003195 449 ---DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLIC 525 (840)
Q Consensus 449 ---~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~ 525 (840)
...+.|..+|+++..+....|+.+..|...++...+.+..|+|...|......+..++......+..++-+.+..+.
T Consensus 815 k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il 894 (982)
T KOG4653|consen 815 KKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLIL 894 (982)
T ss_pred ccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 12577899999999999999999999999888776777778877778655555555444332233345555555444
Q ss_pred hh-hcCCCHHHHHHHHHHHHHHHHHhCcchhhhHH
Q 003195 526 EG-IASSSWSSKRKSAKAICKLGEILGESLSNYHH 559 (840)
Q Consensus 526 ~~-L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~ 559 (840)
.. -.|.+.-+||+|+..+..+-...|..+.|++.
T Consensus 895 ~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr 929 (982)
T KOG4653|consen 895 SLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILR 929 (982)
T ss_pred HHHccCCchhhHHHHHHHHHHHHhccchhhHHHHH
Confidence 43 35889999999999999999999988777543
No 71
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.13 Score=60.40 Aligned_cols=255 Identities=13% Similarity=0.063 Sum_probs=127.7
Q ss_pred chhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHH
Q 003195 263 KVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDT 342 (840)
Q Consensus 263 ~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~ea 342 (840)
+...+|..++++|++....-...++-.. +..|+.++......+.+--..-.+.- .|.-...| .+|
T Consensus 306 ~~~~LrvlainiLgkFL~n~d~NirYva---Ln~L~r~V~~d~~avqrHr~tIleCL---~DpD~SIk---------rra 370 (866)
T KOG1062|consen 306 SNSGLRVLAINILGKFLLNRDNNIRYVA---LNMLLRVVQQDPTAVQRHRSTILECL---KDPDVSIK---------RRA 370 (866)
T ss_pred CCchHHHHHHHHHHHHhcCCccceeeee---hhhHHhhhcCCcHHHHHHHHHHHHHh---cCCcHHHH---------HHH
Confidence 3456788888888887766555543322 34444444322221111000000000 00001111 245
Q ss_pred HHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHH
Q 003195 343 LDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFAS 422 (840)
Q Consensus 343 l~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~ 422 (840)
+|-....+++..+..++..+++.+.+. +...|..++.-+..++.++..+=.-|.+.+++.+-.+ ..-|+...+.
T Consensus 371 lELs~~lvn~~Nv~~mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~a-----G~~V~~dv~~ 444 (866)
T KOG1062|consen 371 LELSYALVNESNVRVMVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTA-----GDFVNDDVVN 444 (866)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc-----ccccchhhHH
Confidence 666666677777888888888888776 6678888888888888888766556666666655433 3445555666
Q ss_pred HHHHhhhcCCHH----HHHHHHHHHHHhh---cCChhhhHHHHHHHHHHHhhchh-----hh-hhhHhhHhHHHHH--hh
Q 003195 423 ACASVLKYATPS----QAQKLIEETAALH---IDDKNSQISCAILLKSYSSVASD-----VL-SGYHAVIVPVIFI--SR 487 (840)
Q Consensus 423 Alg~l~~~~~~~----~~~~li~~l~~~~---~~d~~~r~~~~~~i~ai~~~~~~-----~f-~~~~~~llP~l~~--~~ 487 (840)
++-.++....++ .+.++-.-+...+ .+.+..-++++-+||..+...-+ .+ +.--+.++-.+.. ..
T Consensus 445 nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~ 524 (866)
T KOG1062|consen 445 NLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMS 524 (866)
T ss_pred HHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHh
Confidence 666666554222 2223222222221 12334455666777765421100 00 0000112211111 11
Q ss_pred cCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHH
Q 003195 488 FEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKA 542 (840)
Q Consensus 488 ~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~ 542 (840)
+..+..++....-..-.+..... .-.++|-.++.++..+-+-++++.|...
T Consensus 525 ~~s~~~tk~yal~Al~KLSsr~~----s~~~ri~~lI~~~~~s~~~elQQRa~E~ 575 (866)
T KOG1062|consen 525 HSSDSTTKGYALTALLKLSSRFH----SSSERIKQLISSYKSSLDTELQQRAVEY 575 (866)
T ss_pred ccchHHHHHHHHHHHHHHHhhcc----ccHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 22233444433322222222211 1156677778888888888888877654
No 72
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.83 E-value=0.14 Score=62.54 Aligned_cols=131 Identities=13% Similarity=0.055 Sum_probs=91.8
Q ss_pred HHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHh-CcchhhhHHHHHHHHHHhcCCCCchhHH
Q 003195 500 ELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEIL-GESLSNYHHVLLESIMKEVPGRLWEGKD 578 (840)
Q Consensus 500 ~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~-~~~l~~~l~~llp~L~~~l~~r~~~~Ke 578 (840)
+++..+.+.....+.+ +-+.++.+..+..+.+..+|.+|++|++.+.+.. ++...-.+..++|.+-. + .....|.
T Consensus 798 ~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~-~--~~~~~r~ 873 (1549)
T KOG0392|consen 798 EVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGD-L--DKFVRRQ 873 (1549)
T ss_pred HHHHHHHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-h--hhHhhhh
Confidence 3333333333334445 5566778888899999999999999999999764 33333345555554422 1 1244566
Q ss_pred HHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCC
Q 003195 579 ALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD 638 (840)
Q Consensus 579 ~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~ 638 (840)
.+-+.+.-+....... ..||.+-+++.+.+.+.+....+|.+|-.++..++..++-
T Consensus 874 ~a~e~~~~l~~~l~~~----l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~l 929 (1549)
T KOG0392|consen 874 GADELIELLDAVLMVG----LVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPL 929 (1549)
T ss_pred hHHHHHHHHHHhhccc----ccccceeehhhhhcccccchHHHHHHHHHHHHHHhccccc
Confidence 6677777666655433 3488999999999999999999999999999999998854
No 73
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.82 E-value=1.4e-05 Score=63.01 Aligned_cols=54 Identities=28% Similarity=0.440 Sum_probs=50.0
Q ss_pred hhhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHH
Q 003195 89 LNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKS 142 (840)
Q Consensus 89 w~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~ 142 (840)
|.-|++|+.+||.+++..++.+++++++++|.|...+.|+++.||.++..+++.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 778999999999999999999999999999999999999999999999877654
No 74
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.015 Score=67.22 Aligned_cols=294 Identities=11% Similarity=0.109 Sum_probs=157.2
Q ss_pred CCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHH
Q 003195 126 YDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAF 205 (840)
Q Consensus 126 ~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~ 205 (840)
++||.-||-++.+-.-.|- + .+-+++++|.+..++..+..-||..|..|+..+... ++.+-|--|+++...+
T Consensus 109 QHPNEyiRG~TLRFLckLk-E-----~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~--~~~L~pDapeLi~~fL 180 (948)
T KOG1058|consen 109 QHPNEYIRGSTLRFLCKLK-E-----PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN--FEHLIPDAPELIESFL 180 (948)
T ss_pred cCchHhhcchhhhhhhhcC-c-----HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh--hhhhcCChHHHHHHHH
Confidence 3466666665544333221 1 346889999999999999999999999999998765 3456666667777665
Q ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccc
Q 003195 206 RAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIA 285 (840)
Q Consensus 206 ~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~ 285 (840)
. .+..+++.+.|.-. +-.++ ....++++...+. .+.+=.+.++..-++.+-+.+......
T Consensus 181 ~--~e~DpsCkRNAFi~--------L~~~D--------~ErAl~Yl~~~id--qi~~~~~~LqlViVE~Irkv~~~~p~~ 240 (948)
T KOG1058|consen 181 L--TEQDPSCKRNAFLM--------LFTTD--------PERALNYLLSNID--QIPSFNDSLQLVIVELIRKVCLANPAE 240 (948)
T ss_pred H--hccCchhHHHHHHH--------HHhcC--------HHHHHHHHHhhHh--hccCccHHHHHHHHHHHHHHHhcCHHH
Confidence 3 34445554443211 11222 4456666665553 233323455555555555555532221
Q ss_pred cccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhh-cChhhHhhHHHHHHH
Q 003195 286 IRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINV-VDTESLDQLVPHLAR 364 (840)
Q Consensus 286 l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~-~d~~~l~~lvp~L~~ 364 (840)
=. ..+..++..|++..+.+ .| ||-..++.. .++..+..-...+++
T Consensus 241 ~~----~~i~~i~~lL~stssaV-~f-----------------------------Eaa~tlv~lS~~p~alk~Aa~~~i~ 286 (948)
T KOG1058|consen 241 KA----RYIRCIYNLLSSTSSAV-IF-----------------------------EAAGTLVTLSNDPTALKAAASTYID 286 (948)
T ss_pred hh----HHHHHHHHHHhcCCchh-hh-----------------------------hhcceEEEccCCHHHHHHHHHHHHH
Confidence 12 23555666665543333 12 111111111 122223333444555
Q ss_pred HHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 003195 365 LVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETA 444 (840)
Q Consensus 365 ~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~ 444 (840)
++-+..+-++|.-.++-|..+...... -.+.++--++..| +.++-+||+.+..-.=.++..-+ +.+++..+.
T Consensus 287 l~~kesdnnvklIvldrl~~l~~~~~~----il~~l~mDvLrvL-ss~dldvr~Ktldi~ldLvssrN---vediv~~Lk 358 (948)
T KOG1058|consen 287 LLVKESDNNVKLIVLDRLSELKALHEK----ILQGLIMDVLRVL-SSPDLDVRSKTLDIALDLVSSRN---VEDIVQFLK 358 (948)
T ss_pred HHHhccCcchhhhhHHHHHHHhhhhHH----HHHHHHHHHHHHc-CcccccHHHHHHHHHHhhhhhcc---HHHHHHHHH
Confidence 554444666776666666655422211 2223333344455 66778888665443333333333 444444444
Q ss_pred Hhh----cC----ChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchH
Q 003195 445 ALH----ID----DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKY 493 (840)
Q Consensus 445 ~~~----~~----d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~ 493 (840)
..+ .+ +...|+.....+.+.+-. |..+...++|+++....|.++.
T Consensus 359 ke~~kT~~~e~d~~~~yRqlLiktih~cav~----Fp~~aatvV~~ll~fisD~N~~ 411 (948)
T KOG1058|consen 359 KEVMKTHNEESDDNGKYRQLLIKTIHACAVK----FPEVAATVVSLLLDFISDSNEA 411 (948)
T ss_pred HHHHhccccccccchHHHHHHHHHHHHHhhc----ChHHHHHHHHHHHHHhccCCHH
Confidence 333 21 134577777777766543 5567778899887777776554
No 75
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.81 E-value=0.00071 Score=74.05 Aligned_cols=196 Identities=14% Similarity=0.096 Sum_probs=125.7
Q ss_pred HHHHHHHHHhccCCCchHhHHHHHHHHHHHHhc-cCccccHHHHHHHHHHhHhhc-CcHHHHHHHHHHHHHhhhcCCHHH
Q 003195 358 LVPHLARLVRSGIGLNTRVGVASFISLLVQKIG-MDIKPYTSMLLRLLFPVVKEE-KSAAAKRAFASACASVLKYATPSQ 435 (840)
Q Consensus 358 lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~-~~~~p~~~~lL~~Ll~~l~~d-~~~~Vr~~a~~Alg~l~~~~~~~~ 435 (840)
++-.+++.++.......+-+|..-|..+...-+ .-...|..+||-.++..+ +| .+..+++-+...++.+++.-+...
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL-~d~~~~~~k~laLrvL~~ml~~Q~~~l 365 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVL-SDSEDEIIKKLALRVLREMLTNQPARL 365 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH-ccchhhHHHHHHHHHHHHHHHhchHhh
Confidence 444444445444344556667665544432222 223567889999999999 67 788899999999999988765543
Q ss_pred HHH---HHHHHHHhhc--CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCC-
Q 003195 436 AQK---LIEETAALHI--DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGD- 509 (840)
Q Consensus 436 ~~~---li~~l~~~~~--~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~- 509 (840)
++. -+.++++... .|.-.|.+.-.+...++.+.|. .....+.|+|+. ++++ ..-++.+..+.++.+.
T Consensus 366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~---~~I~~i~~~Ilt---~D~~-~~~~~iKm~Tkl~e~l~ 438 (516)
T KOG2956|consen 366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL---QCIVNISPLILT---ADEP-RAVAVIKMLTKLFERLS 438 (516)
T ss_pred hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch---hHHHHHhhHHhc---Ccch-HHHHHHHHHHHHHhhcC
Confidence 322 2222222221 2333455555666666666664 334556677654 2222 2222223333333322
Q ss_pred hhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhC-cchhhhHHHH
Q 003195 510 RVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILG-ESLSNYHHVL 561 (840)
Q Consensus 510 ~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~-~~l~~~l~~l 561 (840)
...+...++.|.|.+.+..++.+..||..|.+||-++....| +.+.||+.++
T Consensus 439 ~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 439 AEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred HHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 246778899999999999999999999999999999999999 8899998765
No 76
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.81 E-value=0.11 Score=61.98 Aligned_cols=431 Identities=12% Similarity=0.076 Sum_probs=210.1
Q ss_pred CCCCH-hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHH
Q 003195 126 YDPDK-NVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAA 204 (840)
Q Consensus 126 ~Dp~~-~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l 204 (840)
.+.|. ..++||..|+.+++.+. .+..+++++++++..++..++.-.=.=+-...+..+...+ -.+..+
T Consensus 29 ~s~n~~~kidAmK~iIa~M~~G~------dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l-----LavNti 97 (757)
T COG5096 29 ESSNDYKKIDAMKKIIAQMSLGE------DMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL-----LAVNTI 97 (757)
T ss_pred cccChHHHHHHHHHHHHHHhcCC------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHH
Confidence 45544 45568899998887543 2666667777777777888887765555444444331111 223344
Q ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhcc
Q 003195 205 FRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGI 284 (840)
Q Consensus 205 ~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~ 284 (840)
.+-+.|.++.+|-.|.+....+ .-.++++.++|.+. +.+.++++.||..|..++.++-+....
T Consensus 98 ~kDl~d~N~~iR~~AlR~ls~l----------------~~~el~~~~~~~ik-~~l~d~~ayVRk~Aalav~kly~ld~~ 160 (757)
T COG5096 98 QKDLQDPNEEIRGFALRTLSLL----------------RVKELLGNIIDPIK-KLLTDPHAYVRKTAALAVAKLYRLDKD 160 (757)
T ss_pred HhhccCCCHHHHHHHHHHHHhc----------------ChHHHHHHHHHHHH-HHccCCcHHHHHHHHHHHHHHHhcCHh
Confidence 4456799999999986555433 23467788888876 457888999999999999998865443
Q ss_pred ccccchHH-HHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHH
Q 003195 285 AIRPHLSD-LVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLA 363 (840)
Q Consensus 285 ~l~p~lp~-Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~ 363 (840)
.. ... ++..+..++.+..|.++...-.... .++.+.... ....+. ..+|.+.
T Consensus 161 l~---~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~--~i~~e~a~~----------~~~~~~------------~~i~~l~ 213 (757)
T COG5096 161 LY---HELGLIDILKELVADSDPIVIANALASLA--EIDPELAHG----------YSLEVI------------LRIPQLD 213 (757)
T ss_pred hh---hcccHHHHHHHHhhCCCchHHHHHHHHHH--Hhchhhhhh----------HHHHHH------------HHhhhcc
Confidence 21 111 3444555566777766432211000 010010000 000000 0111110
Q ss_pred HHHhccCCCc--hHhHHHHHHHHHHHHhccCcccc-HHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHH-
Q 003195 364 RLVRSGIGLN--TRVGVASFISLLVQKIGMDIKPY-TSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKL- 439 (840)
Q Consensus 364 ~~lk~~~~~~--~r~~a~~~l~~L~~~~~~~~~p~-~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~l- 439 (840)
-. .+. +...-...+..|..+.+. .|. ...+...+...+ ...|+.|-..++..+-++....+...+-..
T Consensus 214 ~~-----~~~~~~~~~~~~~le~L~~~~~~--~~~s~~~~~~~~~~~~-~~~n~~vl~~av~~i~~l~~~~~~~~~~~~~ 285 (757)
T COG5096 214 LL-----SLSVSTEWLLLIILEVLTERVPT--TPDSAEDFEERLSPPL-QHNNAEVLLIAVKVILRLLVFLPSNNLFLIS 285 (757)
T ss_pred ch-----hhhhhHHHHHHHHHHHHHccCCC--CCCcHHHHHHhccchh-hhCcHHHHHHHHHHHHHHhhhhccccHHHhh
Confidence 00 000 011111222223333322 223 223334444444 567788877777777666665554443333
Q ss_pred HHHHHHhhcCChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHH
Q 003195 440 IEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGE 519 (840)
Q Consensus 440 i~~l~~~~~~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~ 519 (840)
.+++..+...++.....+......+.- +.....++..+-+.+. .++++.........+...+.. .+.+..
T Consensus 286 ~~~l~~Ll~~~~~~~~~vl~~~~~~~l---~~~~k~~~~~~~~f~~-~~~~~i~~~lek~~~~t~l~~--~~n~~~---- 355 (757)
T COG5096 286 SPPLVTLLAKPESLIQYVLRRNIQIDL---EVCSKLLDKVKKLFLI-EYNDDIYIKLEKLDQLTRLAD--DQNLSQ---- 355 (757)
T ss_pred ccHHHHHHcCCHHHHHHHHHHhhHHHH---HhhHHHHHHHhhhhhh-hccchHHHHHHHHHHHhhcCC--chhhHH----
Confidence 334444443343444333322222211 1112233333333222 222332322222222211111 122222
Q ss_pred HHHHHHhhhcC--CCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHH------------HHHHHH
Q 003195 520 IVSLICEGIAS--SSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDA------------LLYAIG 585 (840)
Q Consensus 520 Il~~l~~~L~d--~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~------------vl~aL~ 585 (840)
++.-+..+..+ .+..+=+.+.++||+++.+..+.... .+..++..++| .|...+- ++.+..
T Consensus 356 ~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~~s~~~~----~I~~~lel~~g-~~~~~~Yi~~e~~~~~~i~v~r~~~ 430 (757)
T COG5096 356 ILLELIYYIAENHIDAEMVSEAIKALGDLASKAESSVND----CISELLELLEG-VWIRGSYIVQEVRIVDCISVIRISV 430 (757)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHhhhhhhhhhHHH----HHHHHHHhccc-hhhccchhhhhhcccceeeeeehhc
Confidence 44444555555 67778888999999999887544433 44444444444 4433211 122222
Q ss_pred HHHHhcccccccCCCCchHHHHHHHHHHHh--hcCHHHHHHH-----HHHHHHHHHHcCC
Q 003195 586 SISTSCHKDISAEDPTTPFAIVDMVSSACR--KKIKKYREAA-----FSCLEQVIKAFRD 638 (840)
Q Consensus 586 ~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~R~~A-----l~~L~~l~~~~~~ 638 (840)
..+..+... ........+-++...+. .+.+.++... ++.+|++.+..+.
T Consensus 431 ~~lr~l~~~----~~~~~~~~l~~~~e~l~~~~~~P~~k~~~~~~~~~wl~ge~~~~i~r 486 (757)
T COG5096 431 LVLRILPNE----YPKILLRGLYALEETLELQSREPRAKSVTDKYLGAWLLGEFSDIIPR 486 (757)
T ss_pred chhhhcCCc----chhhhHHHHHHHHHHhhccccCcHHHHHHhhhhHHHhHHHHHHHHhh
Confidence 222222211 01112222222333332 2267888888 9999999988765
No 77
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.81 E-value=0.0024 Score=76.65 Aligned_cols=197 Identities=13% Similarity=0.124 Sum_probs=148.5
Q ss_pred hhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCC
Q 003195 353 ESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT 432 (840)
Q Consensus 353 ~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~ 432 (840)
++++++.|.+...+-+. .|..|.+++.-+......-+....+-...++..++.....|.|..|-
T Consensus 249 di~~ki~~~l~t~~~s~-~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~--------------- 312 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSK-KWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVV--------------- 312 (815)
T ss_pred hhhhhcChHHHHhhhcc-chHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHH---------------
Confidence 35677888888877776 89999999998888777666333333333444444444345554432
Q ss_pred HHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhh
Q 003195 433 PSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVT 512 (840)
Q Consensus 433 ~~~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~ 512 (840)
..++.++..++..++..|.+|...+.|.++....+-..++|+...++.+.+..++
T Consensus 313 ----------------------~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~--- 367 (815)
T KOG1820|consen 313 ----------------------MLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST--- 367 (815)
T ss_pred ----------------------HHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc---
Confidence 2335667777888888899999999999888777777778887777766655532
Q ss_pred HHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcc--hhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHh
Q 003195 513 LQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES--LSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTS 590 (840)
Q Consensus 513 i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~--l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~ 590 (840)
.+..+.+.+...+++.+..+|......++.....++.. ...-+.++.|.++....++..++|.+.+++++.+...
T Consensus 368 ---~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 368 ---PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred ---cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 35667888888999999999999999999999988842 2234899999999999999999999999999999988
Q ss_pred ccc
Q 003195 591 CHK 593 (840)
Q Consensus 591 ~~~ 593 (840)
++.
T Consensus 445 ~Ge 447 (815)
T KOG1820|consen 445 HGE 447 (815)
T ss_pred hhH
Confidence 774
No 78
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.0031 Score=73.19 Aligned_cols=365 Identities=12% Similarity=0.099 Sum_probs=184.9
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 003195 160 DDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLT 239 (840)
Q Consensus 160 ~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~ 239 (840)
..++....|++|-+|..|...++.+ .+......++..+.++++|..+.||++|.-.+..+...-.+.+..
T Consensus 89 nt~~kD~~d~np~iR~lAlrtm~~l-------~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~--- 158 (734)
T KOG1061|consen 89 NTFLKDCEDPNPLIRALALRTMGCL-------RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVED--- 158 (734)
T ss_pred hhhhccCCCCCHHHHHHHhhceeeE-------eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccc---
Confidence 3456677899999997665443332 244455577888889999999999998865555443222222211
Q ss_pred ccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhcc-ccccchHHHHHHHHHhccCchhHhHHHHHHhhhh
Q 003195 240 EISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGI-AIRPHLSDLVSCMLESLSSLEDQGLNYIELHAAN 318 (840)
Q Consensus 240 ~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~-~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~ 318 (840)
.-+++.|-+ -+.++++.|-..|+.++..|.+.-.. ...-..++++..+++++.....|..-
T Consensus 159 ---------~gl~~~L~~-ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi-------- 220 (734)
T KOG1061|consen 159 ---------SGLVDALKD-LLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQI-------- 220 (734)
T ss_pred ---------cchhHHHHH-HhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHH--------
Confidence 123444321 12345678888999999999886543 33333456677777766643333211
Q ss_pred cccchhhhHHHHHhhccCCcHHHHHHHHHhhcChh--hHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCcccc
Q 003195 319 AGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTE--SLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPY 396 (840)
Q Consensus 319 ~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~--~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~ 396 (840)
..++.+..|.-.+ ....++.++...++.. ...+-.++.+++-.+...+..
T Consensus 221 ----------------------~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~-n~avvlsavKv~l~~~~~~~~----- 272 (734)
T KOG1061|consen 221 ----------------------FILDCLAEYVPKDSREAEDICERLTPRLQHA-NSAVVLSAVKVILQLVKYLKQ----- 272 (734)
T ss_pred ----------------------HHHHHHHhcCCCCchhHHHHHHHhhhhhccC-CcceEeehHHHHHHHHHHHHH-----
Confidence 1122223332111 0111222222222211 112222344443322211111
Q ss_pred HHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHhhchhhhhhhH
Q 003195 397 TSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYH 476 (840)
Q Consensus 397 ~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~~~f~~~~ 476 (840)
+.+ ..+.++.+++...+...+...-++-.=+.-+....+..|....
T Consensus 273 -------------------~~~---------------~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~ 318 (734)
T KOG1061|consen 273 -------------------VNE---------------LLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEI 318 (734)
T ss_pred -------------------HHH---------------HHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHh
Confidence 000 1112222222222222222222222222222223343333222
Q ss_pred hhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhh
Q 003195 477 AVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSN 556 (840)
Q Consensus 477 ~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~ 556 (840)
. .|..++.+--.++..=.++...++. ...+++++.-+.++-.+-+.+.=+.|.++||.++.++.+.
T Consensus 319 ~-----~Ff~kynDPiYvK~eKleil~~la~------~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~--- 384 (734)
T KOG1061|consen 319 K-----VFFCKYNDPIYVKLEKLEILIELAN------DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS--- 384 (734)
T ss_pred H-----eeeeecCCchhhHHHHHHHHHHHhh------HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---
Confidence 2 1222333333454433344444332 2345567777777777888888888999999999887654
Q ss_pred hHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHH
Q 003195 557 YHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRK-KIKKYREAAFSCLEQVIKA 635 (840)
Q Consensus 557 ~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~R~~Al~~L~~l~~~ 635 (840)
...+..|...++-+..-+..+++..+..+.+.++.. .+.++..+..-... .++.-|.+-+|.+|+.+..
T Consensus 385 --~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~--------~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~ 454 (734)
T KOG1061|consen 385 --NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK--------YESVVAILCENLDSLQEPEAKAALIWILGEYAER 454 (734)
T ss_pred --hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc--------hhhhhhhhcccccccCChHHHHHHHHHHhhhhhc
Confidence 345666666666444344455566666666655421 24455554443322 3677888888888888888
Q ss_pred cCC
Q 003195 636 FRD 638 (840)
Q Consensus 636 ~~~ 638 (840)
+++
T Consensus 455 i~~ 457 (734)
T KOG1061|consen 455 IEN 457 (734)
T ss_pred cCc
Confidence 776
No 79
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.049 Score=62.80 Aligned_cols=190 Identities=18% Similarity=0.193 Sum_probs=108.5
Q ss_pred hHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhc-cCChHHHH
Q 003195 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLV-ADPKRTID 152 (840)
Q Consensus 74 ~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv-~d~~~~i~ 152 (840)
||....|.|.+++. ..-|+-|...+-.++.+-++.++|-.+++..+| .||+|.|+.|+.+++=-|. .||+.
T Consensus 144 DLa~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr~~FprL~EkL----eDpDp~V~SAAV~VICELArKnPkn--- 215 (877)
T KOG1059|consen 144 DLADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALRPCFPRLVEKL----EDPDPSVVSAAVSVICELARKNPQN--- 215 (877)
T ss_pred HHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhc----cCCCchHHHHHHHHHHHHHhhCCcc---
Confidence 67788888888875 556777888889999888999999877777776 9999999999977665555 45542
Q ss_pred HHHHHHHHHHHHhh--CCCChhHHHHHHHHHHHHHccCCchhhhHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 003195 153 EHLDLIFDDLLIQS--GSRLWRSREASCLSLADIIQGRKFDQVGKHLR-RIWTAAFRAMDDIKETVRTAGDKLCRSVTSL 229 (840)
Q Consensus 153 ~~~~~Il~~Ll~~l--~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~-~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~ 229 (840)
+-++-|.++..| .+++|-.=.-- .-|+.|. .++|.|. .+++.+...|. +..|.+++-.....
T Consensus 216 --yL~LAP~ffkllttSsNNWmLIKii-KLF~aLt------plEPRLgKKLieplt~li~------sT~AmSLlYECvNT 280 (877)
T KOG1059|consen 216 --YLQLAPLFYKLLVTSSNNWVLIKLL-KLFAALT------PLEPRLGKKLIEPITELME------STVAMSLLYECVNT 280 (877)
T ss_pred --cccccHHHHHHHhccCCCeehHHHH-HHHhhcc------ccCchhhhhhhhHHHHHHH------hhHHHHHHHHHHHH
Confidence 223333344444 24578432211 1122221 2333222 23333333332 23444444433222
Q ss_pred HHHhhhccccccchHHhHHHhHHHHHHhcc-cCCchhHHHHHHHHHHHHHHHhhccccccch
Q 003195 230 TIRLCDVTLTEISDARQSMDIVLPFLLAEG-ILSKVDSISKASIGVVMKLVKGAGIAIRPHL 290 (840)
Q Consensus 230 ~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~g-L~s~~~evr~~al~~L~~la~~~g~~l~p~l 290 (840)
.+.. +-..|. .+..+..+..+.-| ++ +.++++.+|-..+.+++.|++.-.+.+..|-
T Consensus 281 VVa~-s~s~g~-~d~~asiqLCvqKL--r~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k 338 (877)
T KOG1059|consen 281 VVAV-SMSSGM-SDHSASIQLCVQKL--RIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK 338 (877)
T ss_pred heee-hhccCC-CCcHHHHHHHHHHH--hhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH
Confidence 2211 111110 12223334444433 23 3456788999999999999987766655554
No 80
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.77 E-value=0.18 Score=60.07 Aligned_cols=157 Identities=8% Similarity=0.012 Sum_probs=121.2
Q ss_pred hhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCCh-hhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCc
Q 003195 474 GYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDR-VTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE 552 (840)
Q Consensus 474 ~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~-~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~ 552 (840)
+++..+.|.+...-+......|.++...+.-.....+ ..+.+..+.++|+++++|+=++..+|-.+-.++..+....+.
T Consensus 863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 4566688876554343333456555544433333332 456789999999999999999999999999999999998888
Q ss_pred chhhhHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 003195 553 SLSNYHHVLLESIMKEVPGRL---WEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCL 629 (840)
Q Consensus 553 ~l~~~l~~llp~L~~~l~~r~---~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L 629 (840)
-.+.|+.+++|.+..--.+.. -.+|+.+++.|.++.+-.+..- -.+|.+.++.++.+.+.|+...+|+.|..+=
T Consensus 943 L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~---l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 943 LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKS---LLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcc---cccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 888899999999988776654 3589999999999988554321 2378999999999999999999999999885
Q ss_pred HHHH
Q 003195 630 EQVI 633 (840)
Q Consensus 630 ~~l~ 633 (840)
++..
T Consensus 1020 ~~W~ 1023 (1030)
T KOG1967|consen 1020 QNWY 1023 (1030)
T ss_pred hhhh
Confidence 5443
No 81
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.77 E-value=0.0028 Score=69.50 Aligned_cols=193 Identities=15% Similarity=0.195 Sum_probs=131.0
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCC-CChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhc
Q 003195 131 NVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGS-RLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMD 209 (840)
Q Consensus 131 ~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~-~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ld 209 (840)
.-..++..+.+.++.+.=..-++||..||..+++-+.| ++.-.|+-|..-|..++...+ ..+.++-...+.+++.+-.
T Consensus 303 ~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~-~~l~DstE~ai~K~Leaa~ 381 (516)
T KOG2956|consen 303 ERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP-ARLFDSTEIAICKVLEAAK 381 (516)
T ss_pred HHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch-HhhhchHHHHHHHHHHHHh
Confidence 33345666888888776556699999999999999988 677778888888888877654 4577777778888888877
Q ss_pred cccHH-HHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhc-cccc
Q 003195 210 DIKET-VRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAG-IAIR 287 (840)
Q Consensus 210 D~~~~-VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g-~~l~ 287 (840)
|.... +|.|+.-+.+.++... +...+..+-|.|+ + .+++.-..++..+.++++... +.+.
T Consensus 382 ds~~~v~~~Aeed~~~~las~~-------------P~~~I~~i~~~Il--t---~D~~~~~~~iKm~Tkl~e~l~~EeL~ 443 (516)
T KOG2956|consen 382 DSQDEVMRVAEEDCLTTLASHL-------------PLQCIVNISPLIL--T---ADEPRAVAVIKMLTKLFERLSAEELL 443 (516)
T ss_pred CCchhHHHHHHHHHHHHHHhhC-------------chhHHHHHhhHHh--c---CcchHHHHHHHHHHHHHhhcCHHHHH
Confidence 76654 5555544444443321 3345666778775 2 333444455668888887664 3456
Q ss_pred cchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHh
Q 003195 288 PHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVR 367 (840)
Q Consensus 288 p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk 367 (840)
+-+|++.|.++++-.+.
T Consensus 444 ~ll~diaP~~iqay~S~--------------------------------------------------------------- 460 (516)
T KOG2956|consen 444 NLLPDIAPCVIQAYDST--------------------------------------------------------------- 460 (516)
T ss_pred HhhhhhhhHHHHHhcCc---------------------------------------------------------------
Confidence 66666666666544322
Q ss_pred ccCCCchHhHHHHHHHHHHHHhc-cCccccHHHHHHHHHHhH
Q 003195 368 SGIGLNTRVGVASFISLLVQKIG-MDIKPYTSMLLRLLFPVV 408 (840)
Q Consensus 368 ~~~~~~~r~~a~~~l~~L~~~~~-~~~~p~~~~lL~~Ll~~l 408 (840)
.--+|-.|.=||..+..+.| ..+.||++++-..-++.+
T Consensus 461 ---SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~Ll 499 (516)
T KOG2956|consen 461 ---SSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLL 499 (516)
T ss_pred ---hHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHH
Confidence 22346677778888888999 889999887766655555
No 82
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.062 Score=59.22 Aligned_cols=101 Identities=15% Similarity=0.081 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCC-----CchhHHHHHHHHHHHHHhcccccccCCCCchHHH
Q 003195 532 SWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGR-----LWEGKDALLYAIGSISTSCHKDISAEDPTTPFAI 606 (840)
Q Consensus 532 s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r-----~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i 606 (840)
..+||..|..+||.+.........+-...++..-+..+-.+ ...+|..++.+++.+.++-. +.-.+.+..+.+
T Consensus 497 ~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a--~~lq~~~wA~~~ 574 (728)
T KOG4535|consen 497 KDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPA--LPLQTAPWASQA 574 (728)
T ss_pred hhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcc--ccccCCCchHHH
Confidence 46899999999999988765433333444444444444332 45678888999999986432 212245677888
Q ss_pred HHHHHHHHhh-cCHHHHHHHHHHHHHHHH
Q 003195 607 VDMVSSACRK-KIKKYREAAFSCLEQVIK 634 (840)
Q Consensus 607 ~~~l~~~~~~-~~~~~R~~Al~~L~~l~~ 634 (840)
.+++...+.+ +|.++|..|..+|..-.+
T Consensus 575 F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 575 FNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred HHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 8877775554 689999999888865444
No 83
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.69 E-value=0.0012 Score=79.31 Aligned_cols=303 Identities=18% Similarity=0.181 Sum_probs=169.2
Q ss_pred chHHHHHHHhhhcCCch-HHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhhh---------------------
Q 003195 58 STYKELCNLANEMGQPD-LIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLR--------------------- 115 (840)
Q Consensus 58 styk~l~~lA~~~g~p~-lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~--------------------- 115 (840)
....++++|..+.|.|- .+-.|........+-+-|..+.-+++.|++-.|+...+++.
T Consensus 117 ~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l~D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 196 (815)
T KOG1820|consen 117 AAVAAVLSLVEEFGKPKVPSKAFIKHVGSLADKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMS 196 (815)
T ss_pred HHHHHHHHHHHHhcCCCCccccccccCccccccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhccccccc
Confidence 34446777777777762 23333322222224466666777777777666555544321
Q ss_pred ------hHHHHHHhhcCCCCHhHHHHH-HHHHHHhccCCh------H--HHHHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q 003195 116 ------LLIPKLVRFQYDPDKNVQDAM-AHIWKSLVADPK------R--TIDEHLDLIFDDLLIQSGSRLWRSREASCLS 180 (840)
Q Consensus 116 ------~lvP~L~~~~~Dp~~~VR~a~-~~iw~~Lv~d~~------~--~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~A 180 (840)
.+.+...+.-+|||..=+... ....+.-...+. + .....++.+-+.+...|.|+.|.-|..+...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~ 276 (815)
T KOG1820|consen 197 FFNEKRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEE 276 (815)
T ss_pred cccccccccccccccccCCChhhcccccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHH
Confidence 233333344445555443321 111111111000 0 1123456677778889999999999999999
Q ss_pred HHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhccc
Q 003195 181 LADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGI 260 (840)
Q Consensus 181 l~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL 260 (840)
+.+.++....+....|...+...+--...|.+-.|-..|...+..+++-+ |. ....+...+.|.++.+ +
T Consensus 277 l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~l-r~---------~~~~~~~~v~p~lld~-l 345 (815)
T KOG1820|consen 277 LVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKL-RP---------LFRKYAKNVFPSLLDR-L 345 (815)
T ss_pred HHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhc-ch---------hhHHHHHhhcchHHHH-h
Confidence 99999876633344444444433333456877776655555555544322 11 1233445566666643 3
Q ss_pred CCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHH
Q 003195 261 LSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMW 340 (840)
Q Consensus 261 ~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~ 340 (840)
.+...++|..+..++-.++. .-.+..+++..++.+....|+.
T Consensus 346 kekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~-------------------------------- 387 (815)
T KOG1820|consen 346 KEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQI-------------------------------- 387 (815)
T ss_pred hhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhh--------------------------------
Confidence 33333444443333333332 2334455555555555444432
Q ss_pred HHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcc--CccccHHHHHHHHHHhHhhcCcHHHHH
Q 003195 341 DTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGM--DIKPYTSMLLRLLFPVVKEEKSAAAKR 418 (840)
Q Consensus 341 eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~--~~~p~~~~lL~~Ll~~l~~d~~~~Vr~ 418 (840)
|.+|..++.......+. ....-...+.+.++... +|++..||+
T Consensus 388 ----------------------------------k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~-~D~~~~VR~ 432 (815)
T KOG1820|consen 388 ----------------------------------KGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHI-NDTDKDVRK 432 (815)
T ss_pred ----------------------------------HHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhc-cCCcHHHHH
Confidence 33333333333333331 22334567778888887 899999999
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHH
Q 003195 419 AFASACASVLKYATPSQAQKLIEETA 444 (840)
Q Consensus 419 ~a~~Alg~l~~~~~~~~~~~li~~l~ 444 (840)
++..+++.+.++.+.+.+.+++.++.
T Consensus 433 Aa~e~~~~v~k~~Ge~~~~k~L~~~~ 458 (815)
T KOG1820|consen 433 AALEAVAAVMKVHGEEVFKKLLKDLD 458 (815)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhc
Confidence 99999999999999998888887765
No 84
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.0092 Score=67.89 Aligned_cols=310 Identities=14% Similarity=0.129 Sum_probs=164.1
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 003195 162 LLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEI 241 (840)
Q Consensus 162 Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~ 241 (840)
|..-.+|.+.|||.+|..|+-.|-+|.. +.. .+.+...+.|.|..+.||.+|.+++...++.+.--.+.. +
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~k---L~~---~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e-~-- 273 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFK---LSK---ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE-S-- 273 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhccccc---ccH---HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch-h--
Confidence 5556678899999999999888766432 222 456667788999999999999999988876542000100 0
Q ss_pred chHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHH--hccCchhHhHHHHHHhhhhc
Q 003195 242 SDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLE--SLSSLEDQGLNYIELHAANA 319 (840)
Q Consensus 242 ~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~--~ls~~ep~~~~~l~~~a~~~ 319 (840)
.-....+...-.+= +++.+-++.||-.+...||.+-..... ++...|. .++...
T Consensus 274 -~e~kl~D~aF~~vC-~~v~D~sl~VRV~AaK~lG~~~~vSee--------~i~QTLdKKlms~lR-------------- 329 (823)
T KOG2259|consen 274 -EEEKLKDAAFSSVC-RAVRDRSLSVRVEAAKALGEFEQVSEE--------IIQQTLDKKLMSRLR-------------- 329 (823)
T ss_pred -hhhhhHHHHHHHHH-HHHhcCceeeeehHHHHhchHHHhHHH--------HHHHHHHHHHhhhhh--------------
Confidence 01122222222221 245555667777777766655432222 1211111 111100
Q ss_pred ccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCc--hHhHHHHHHHHHHHHhccCccccH
Q 003195 320 GIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLN--TRVGVASFISLLVQKIGMDIKPYT 397 (840)
Q Consensus 320 ~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~--~r~~a~~~l~~L~~~~~~~~~p~~ 397 (840)
|...++.-|- .+..--++....-...=+|.=. . ..+.. .-.|||.
T Consensus 330 ----------Rkr~ahkrpk--~l~s~GewSsGk~~~advpsee--~--d~~~~siI~sGACG----------------- 376 (823)
T KOG2259|consen 330 ----------RKRTAHKRPK--ALYSSGEWSSGKEWNADVPSEE--D--DEEEESIIPSGACG----------------- 376 (823)
T ss_pred ----------hhhhcccchH--HHHhcCCcccCccccccCchhh--c--cccccccccccccc-----------------
Confidence 0000000000 0000000000000000001000 0 00000 0002222
Q ss_pred HHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCC-hhhhHHHHHHHHHHHhhchhhhhhhH
Q 003195 398 SMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDD-KNSQISCAILLKSYSSVASDVLSGYH 476 (840)
Q Consensus 398 ~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~d-~~~r~~~~~~i~ai~~~~~~~f~~~~ 476 (840)
+++-+| .|.-.+||+++..+++.|.-..+. -..+-++.+++++.++ +++|.-+..++..|+.+. ...
T Consensus 377 -----A~VhGl-EDEf~EVR~AAV~Sl~~La~ssP~-FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l-----~i~ 444 (823)
T KOG2259|consen 377 -----ALVHGL-EDEFYEVRRAAVASLCSLATSSPG-FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHL-----AIR 444 (823)
T ss_pred -----eeeeec-hHHHHHHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh-----eec
Confidence 223455 677799999999999999754443 3345577888888643 678999999999988762 233
Q ss_pred hhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcch
Q 003195 477 AVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESL 554 (840)
Q Consensus 477 ~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l 554 (840)
+..++.++....|...++|+...+++.-..-..-..+..-+..++.-+.++=+| |-....|++.+.++-+..+
T Consensus 445 eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~kyPqD-----rd~i~~cm~~iGqnH~~lv 517 (823)
T KOG2259|consen 445 EEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGKYPQD-----RDEILRCMGRIGQNHRRLV 517 (823)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhCCCC-----cHHHHHHHHHHhccChhhH
Confidence 445666666777888899988777775422222223333444444444444444 4556678888887655443
No 85
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.3 Score=57.98 Aligned_cols=113 Identities=13% Similarity=0.182 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHHHHHHHhhhccccccchHH
Q 003195 171 WRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDD-----IKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDAR 245 (840)
Q Consensus 171 wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD-----~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~ 245 (840)
|..-+++|..+-.+.+..+. ...+. ++.+|+..-. +++..-.++..++.+++.|+. +..
T Consensus 481 ~~~tEaci~~~~sva~~~~~-t~~~~----i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~-----------e~P 544 (982)
T KOG2022|consen 481 LNRTEACIFQFQSVAEYLGE-TESTW----IPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLG-----------EHP 544 (982)
T ss_pred HHHHHHHHHHHHHHHhhcCc-chhHH----HHHHHHhccccccccCChhHHHHHHHHHHHHHHHHh-----------cCC
Confidence 88889999988888765442 23344 4455554432 344444455566666666551 223
Q ss_pred hHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcc
Q 003195 246 QSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLS 302 (840)
Q Consensus 246 ~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls 302 (840)
.+++..+|.|++ |+..+... ..+..++.++|+.|...+.||+..++..+-+.+.
T Consensus 545 ~~ln~sl~~L~~-~Lh~sk~s--~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~ 598 (982)
T KOG2022|consen 545 MYLNPSLPLLFQ-GLHNSKES--EQAISTLKTLCETCPESLDPYADQFSAVCYEVLN 598 (982)
T ss_pred cccCchHHHHHH-HhcCchHH--HHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhc
Confidence 577888999984 77544333 3566779999999999999999998888877664
No 86
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.58 E-value=0.00043 Score=81.02 Aligned_cols=128 Identities=20% Similarity=0.195 Sum_probs=111.1
Q ss_pred HHhHHHHHHHHhh-hhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCC---
Q 003195 95 AAFGFSKIAKQAG-DALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRL--- 170 (840)
Q Consensus 95 A~~~l~~I~~~~~-~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~--- 170 (840)
-..||+.+....+ ..+.|.++.++|-|+.+..=|++.||-++.+++..+.......+.+|++.++|.++.--.|.+
T Consensus 887 yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~ 966 (1030)
T KOG1967|consen 887 YLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNM 966 (1030)
T ss_pred HHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcch
Confidence 3467777766554 466788999999999999999999999999999998877667789999999999998776665
Q ss_pred hhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHH
Q 003195 171 WRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKL 222 (840)
Q Consensus 171 wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~ 222 (840)
--||+.|...++.|.+..+...+.+|-++.+..+...+||.|.-||+.|...
T Consensus 967 ~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 967 MVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 5799999999999998888888999999999999999999999999988654
No 87
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.56 E-value=0.061 Score=64.24 Aligned_cols=105 Identities=12% Similarity=0.056 Sum_probs=68.3
Q ss_pred hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCC--hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchh
Q 003195 115 RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP--KRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQ 192 (840)
Q Consensus 115 ~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~--~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~ 192 (840)
..+++.|...+...+..+.-.+....+-|.-.. +..+. -..+++.|..-+.+++-+.+..+..+|.+|-... .
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~--~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~---~ 363 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMA--ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDP---E 363 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH--HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCH---H
Confidence 367777777778888888888888888776432 12221 2247777888888888899999999998885432 2
Q ss_pred hhHHHHH--HHHHHHHHhccccHHHHHHHHHHHHHH
Q 003195 193 VGKHLRR--IWTAAFRAMDDIKETVRTAGDKLCRSV 226 (840)
Q Consensus 193 l~~~L~~--l~~~l~~~ldD~~~~VR~aA~~~~~~l 226 (840)
....+-. ++|.+...+.|.+ .|..+..++..+
T Consensus 364 ~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~L 397 (708)
T PF05804_consen 364 LRSQMVSLGLIPKLVELLKDPN--FREVALKILYNL 397 (708)
T ss_pred HHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHh
Confidence 3333333 5666666677653 444455555444
No 88
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.55 E-value=0.00041 Score=60.21 Aligned_cols=85 Identities=24% Similarity=0.183 Sum_probs=63.3
Q ss_pred HHHHHhhc-CCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHH
Q 003195 118 IPKLVRFQ-YDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKH 196 (840)
Q Consensus 118 vP~L~~~~-~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~ 196 (840)
||.|+..+ .|+++.||..+..+.+.+- -+..++.|...+.|++|.||..++.|++.+=
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence 57788877 9999999999888777331 2245666777779999999999999998761
Q ss_pred HHHHHHHHHHHhcc-ccHHHHHHHHHHH
Q 003195 197 LRRIWTAAFRAMDD-IKETVRTAGDKLC 223 (840)
Q Consensus 197 L~~l~~~l~~~ldD-~~~~VR~aA~~~~ 223 (840)
-++.++.+.+.+.| ....||.+|..++
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 13566666666654 5677899886654
No 89
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.33 Score=56.55 Aligned_cols=427 Identities=13% Similarity=0.108 Sum_probs=212.7
Q ss_pred cchhhhhhHHhHHHHHHHHhh------hhhchhhhhHH-----HHHH-------hhcCCCCHhHHHHHHHHHHHhc-cCC
Q 003195 87 VSLNSKRGAAFGFSKIAKQAG------DALKPHLRLLI-----PKLV-------RFQYDPDKNVQDAMAHIWKSLV-ADP 147 (840)
Q Consensus 87 ~~w~sr~gA~~~l~~I~~~~~------~~l~~~l~~lv-----P~L~-------~~~~Dp~~~VR~a~~~iw~~Lv-~d~ 147 (840)
+.|-+- -..+.++..++.|. ..++||+.-++ |.|- -+=.||..-+|+-+ ++|+.-. +|-
T Consensus 311 qLWlsd-~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~-df~d~g~spdl 388 (970)
T COG5656 311 QLWLSD-IELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYY-DFFDNGLSPDL 388 (970)
T ss_pred Ceecch-HHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhc-chhcCCCChhH
Confidence 345543 35566677777762 35788887444 4331 11237877888765 2332211 110
Q ss_pred ----------hHHHHHHHHHHHHHHHHhhC-----C---CChhHHHHHHHHHHHHHc---cCCchhhhHHHHH-HHHHHH
Q 003195 148 ----------KRTIDEHLDLIFDDLLIQSG-----S---RLWRSREASCLSLADIIQ---GRKFDQVGKHLRR-IWTAAF 205 (840)
Q Consensus 148 ----------~~~i~~~~~~Il~~Ll~~l~-----~---~~wrvR~aac~Al~~Ll~---~~~~~~l~~~L~~-l~~~l~ 205 (840)
.+.-++-+..|++.++.-++ + ++.|-.++|..-++.+.. ..+ .+...+.. |++.+.
T Consensus 389 aal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~s--p~an~me~fiv~hv~ 466 (970)
T COG5656 389 AALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMS--PAANVMEYFIVNHVI 466 (970)
T ss_pred HHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCc--hHHHHHHHHHHHHhh
Confidence 01113337788888777662 1 346777888777766655 221 13333332 333333
Q ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHh--hc
Q 003195 206 RAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKG--AG 283 (840)
Q Consensus 206 ~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~--~g 283 (840)
-.+.+.-.-.|..|-..+..+. ...-++ ....++.+..+.. +.+.+-+|+-.|..++.-+... ..
T Consensus 467 P~f~s~ygfL~Srace~is~~e---eDfkd~-----~ill~aye~t~nc-----l~nn~lpv~ieAalAlq~fi~~~q~h 533 (970)
T COG5656 467 PAFRSNYGFLKSRACEFISTIE---EDFKDN-----GILLEAYENTHNC-----LKNNHLPVMIEAALALQFFIFNEQSH 533 (970)
T ss_pred HhhcCcccchHHHHHHHHHHHH---Hhcccc-----hHHHHHHHHHHHH-----HhcCCcchhhhHHHHHHHHHhchhhh
Confidence 3445555555555433333331 110010 1112233333333 3334456666666666655543 34
Q ss_pred cccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHH
Q 003195 284 IAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLA 363 (840)
Q Consensus 284 ~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~ 363 (840)
..++.|+|.+|..|+.+-...+-.. +
T Consensus 534 ~k~sahVp~tmekLLsLSn~feiD~------------------------------L------------------------ 559 (970)
T COG5656 534 EKFSAHVPETMEKLLSLSNTFEIDP------------------------------L------------------------ 559 (970)
T ss_pred HHHHhhhhHHHHHHHHhcccccchH------------------------------H------------------------
Confidence 5577888888888875433221110 0
Q ss_pred HHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 003195 364 RLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEET 443 (840)
Q Consensus 364 ~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l 443 (840)
..++..++.++...+.||...+...+.+++.. -|...+ +..+ +
T Consensus 560 ---------------S~vMe~fVe~fseELspfa~eLa~~Lv~qFlk-----------iaq~l~-ens~-d--------- 602 (970)
T COG5656 560 ---------------SMVMESFVEYFSEELSPFAPELAGSLVRQFLK-----------IAQSLL-ENSS-D--------- 602 (970)
T ss_pred ---------------HHHHHHHHHHhHHhhchhHHHHHHHHHHHHHH-----------HHHHHH-cCCc-c---------
Confidence 11233445666677777877777776665520 000000 0000 0
Q ss_pred HHhhcCChhhhHHHHHHHHHHH------hhchhhhhhhHhhHhHHH-HHhhcCCchHHHHHHHHHHHHhcCCChhhHHhh
Q 003195 444 AALHIDDKNSQISCAILLKSYS------SVASDVLSGYHAVIVPVI-FISRFEDDKYVSDLFEELWEENTSGDRVTLQLY 516 (840)
Q Consensus 444 ~~~~~~d~~~r~~~~~~i~ai~------~~~~~~f~~~~~~llP~l-~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~y 516 (840)
.+.--++...++.-.+..+. ...++.++.....+.|.+ |+..++-.+-.++.+ ++.+..+ -....+.+.
T Consensus 603 --~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~-dildg~t-f~skeI~pi 678 (970)
T COG5656 603 --TSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEAL-DILDGYT-FMSKEIEPI 678 (970)
T ss_pred --ccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHhhhh-HHHHHhhhh
Confidence 00000122222222222221 234566666666677765 333444333344433 3333211 123456778
Q ss_pred HHHHHHHHHhhhcCCCH-HHHHHHHHHHHHHHHHhCcchhh---hHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHHHh
Q 003195 517 LGEIVSLICEGIASSSW-SSKRKSAKAICKLGEILGESLSN---YHHVLLESIMKEVPGRL--WEGKDALLYAIGSISTS 590 (840)
Q Consensus 517 l~~Il~~l~~~L~d~s~-~vR~~Aa~~L~~La~~~~~~l~~---~l~~llp~L~~~l~~r~--~~~Ke~vl~aL~~l~~~ 590 (840)
...|.+++.+++.++.- .--..++-++..++...+..+.+ |...++.++..++.... -+-.+.+++-+-.++-+
T Consensus 679 mwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln 758 (970)
T COG5656 679 MWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILN 758 (970)
T ss_pred hhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHH
Confidence 88899999999988763 44556677888888776666643 34555556666664432 24466667777777766
Q ss_pred cccccccCCCCchHHHHHHHHHHH--hhcCHHHHHHHHHH
Q 003195 591 CHKDISAEDPTTPFAIVDMVSSAC--RKKIKKYREAAFSC 628 (840)
Q Consensus 591 ~~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~R~~Al~~ 628 (840)
.++.+.. .++|...+++..-. .++...++..|+..
T Consensus 759 ~rd~Ll~---qy~plfi~vags~l~~~dElg~~sv~alel 795 (970)
T COG5656 759 IRDELLS---QYLPLFISVAGSGLKMIDELGPASVYALEL 795 (970)
T ss_pred ccchhHH---hhhHHHHHHHhhhhhccccccchhhhHHHH
Confidence 6665433 35555555444211 12233445555443
No 90
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.46 E-value=0.079 Score=59.57 Aligned_cols=144 Identities=16% Similarity=0.042 Sum_probs=93.1
Q ss_pred ccCCcccccCCCCccchHHHHHHHhhhcC-CchHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhhhhHHHHH
Q 003195 43 FQEGAIGEGLGGGKLSTYKELCNLANEMG-QPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKL 121 (840)
Q Consensus 43 f~~g~~~~~~~~~~~styk~l~~lA~~~g-~p~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L 121 (840)
|..|..|-.|+|..++-|.-|..|++.-. |.=...+++.+-..++...-..+-.++.-.+.+-. ++=-..+.++.|.|
T Consensus 191 ~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll-~~n~q~~~q~rpfL 269 (898)
T COG5240 191 NQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELL-KENSQALLQLRPFL 269 (898)
T ss_pred CccCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHH-HhChHHHHHHHHHH
Confidence 56888999999999999999988888654 33344555554433321111122223333333222 11113466888999
Q ss_pred HhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCC
Q 003195 122 VRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRK 189 (840)
Q Consensus 122 ~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~ 189 (840)
-.++.|.-.+|.--+.+..-++... ..-++.+++.+..|-..+.+...-.|-+|..-|..|....+
T Consensus 270 ~~wls~k~emV~lE~Ar~v~~~~~~--nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 270 NSWLSDKFEMVFLEAARAVCALSEE--NVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred HHHhcCcchhhhHHHHHHHHHHHHh--ccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC
Confidence 8888998888876665555554432 23456778888888888888777779999998888876554
No 91
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.022 Score=64.90 Aligned_cols=281 Identities=14% Similarity=0.120 Sum_probs=147.2
Q ss_pred ChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHH---HHHHHhcCCCh---hhHHhhHHHHHHH
Q 003195 450 DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFE---ELWEENTSGDR---VTLQLYLGEIVSL 523 (840)
Q Consensus 450 d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~---~i~~~~~~~~~---~~i~~yl~~Il~~ 523 (840)
|..+|..++..+-+++. .|+ ..+.........+.|+++.||..+. -+|....++.. ..=....+..+..
T Consensus 211 D~~Vrt~A~eglL~L~e----g~k-L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~ 285 (823)
T KOG2259|consen 211 DFRVRTHAVEGLLALSE----GFK-LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSS 285 (823)
T ss_pred CcchHHHHHHHHHhhcc----ccc-ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHH
Confidence 56667777666666643 221 1111222223346677777886654 34655553211 1112344556667
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchh-HHHHHHHHHHHHHhcccccccCCCC-
Q 003195 524 ICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEG-KDALLYAIGSISTSCHKDISAEDPT- 601 (840)
Q Consensus 524 l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~-Ke~vl~aL~~l~~~~~~~~~~~~~~- 601 (840)
++..+.|.+|.||..||++||.+-....+-+ ++++-..+.++++.+...+ |-..+.+=+.+.+|-. |..+.|
T Consensus 286 vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i---~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~---~~advps 359 (823)
T KOG2259|consen 286 VCRAVRDRSLSVRVEAAKALGEFEQVSEEII---QQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE---WNADVPS 359 (823)
T ss_pred HHHHHhcCceeeeehHHHHhchHHHhHHHHH---HHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc---ccccCch
Confidence 7888999999999999999999887654433 2344445555443211111 1222322222222211 211111
Q ss_pred -----chHHHH-----HHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCcchHHhHHHHHHhhcccccccCCCCCCCCCCcc
Q 003195 602 -----TPFAIV-----DMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTALNKSGQVPLPSDAS 671 (840)
Q Consensus 602 -----~~~~i~-----~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~~l~~~~~~~~~~~~~~~~~~~ 671 (840)
.-..|+ .+++.-+.|+.+++|++|...++.|+..-|+.. ..-..++-.+-++
T Consensus 360 ee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA--~~aldfLvDMfND---------------- 421 (823)
T KOG2259|consen 360 EEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA--VRALDFLVDMFND---------------- 421 (823)
T ss_pred hhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHhcc----------------
Confidence 122333 355666668889999999999999998777632 2222333333222
Q ss_pred chhhhccccCCchhHHHhhhhhhHHhhchhhHHHh-hhhhHHHHHhhcCCCCChHHHHHHHHhhhcCCCCCCCccchhHH
Q 003195 672 KEESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQ-EKNLVQLFTISLSPGFPWTELCSRLQKTLDDSAGTSPHAGISSL 750 (840)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 750 (840)
|-++.. +-+|+.-+....--. ...-++.++.|+ .+.=..+...+..+|+.-.-+
T Consensus 422 ----E~~~VR----------L~ai~aL~~Is~~l~i~eeql~~il~~L--~D~s~dvRe~l~elL~~~~~~--------- 476 (823)
T KOG2259|consen 422 ----EIEVVR----------LKAIFALTMISVHLAIREEQLRQILESL--EDRSVDVREALRELLKNARVS--------- 476 (823)
T ss_pred ----HHHHHH----------HHHHHHHHHHHHHheecHHHHHHHHHHH--HhcCHHHHHHHHHHHHhcCCC---------
Confidence 111111 122223333222222 235567777775 555566777777777643322
Q ss_pred HHHHHhhhhhhhhhhcccchhhhhhHhhhHHHHHHH
Q 003195 751 IQELFHTVSPKVVECISTVKIAQVHISASECLLEIC 786 (840)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~k~~~vr~~a~~~l~~i~ 786 (840)
=.+.++-....+..|+ .|.|+=|-.-..||+.|=
T Consensus 477 d~~~i~m~v~~lL~~L--~kyPqDrd~i~~cm~~iG 510 (823)
T KOG2259|consen 477 DLECIDMCVAHLLKNL--GKYPQDRDEILRCMGRIG 510 (823)
T ss_pred cHHHHHHHHHHHHHHh--hhCCCCcHHHHHHHHHHh
Confidence 1344444444444544 366666777777877653
No 92
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.39 E-value=0.56 Score=56.02 Aligned_cols=125 Identities=5% Similarity=-0.003 Sum_probs=78.4
Q ss_pred HHHHHHHhhhc-CCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhccccccc
Q 003195 519 EIVSLICEGIA-SSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISA 597 (840)
Q Consensus 519 ~Il~~l~~~L~-d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~ 597 (840)
..+|++.+.|. +....+|-.-.-+++++|..|-... +.-+|.+-.+|.+...-+|...+--|.-|++- +-.-|.
T Consensus 968 r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~----d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~-~~vKw~ 1042 (1529)
T KOG0413|consen 968 RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMT----DRYIPMIAASLCDPSVIVRRQTIILLARLLQF-GIVKWN 1042 (1529)
T ss_pred HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHH----HHhhHHHHHHhcCchHHHHHHHHHHHHHHHhh-hhhhcc
Confidence 34555555443 3456788888889999998764443 44566777888887777777666666666541 111121
Q ss_pred CCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCcchHHhHHHHHHhhcc
Q 003195 598 EDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCG 654 (840)
Q Consensus 598 ~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~~l~~ 654 (840)
=.-.+..+...+ +.+.++|.-|=.+++.++..-...-++..+...+..+++
T Consensus 1043 -----G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~~ln~ 1093 (1529)
T KOG0413|consen 1043 -----GELFIRFMLALL-DANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYIIALNQ 1093 (1529)
T ss_pred -----hhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHH
Confidence 122334444444 789999999999999999875443345555555555543
No 93
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.38 E-value=0.07 Score=61.18 Aligned_cols=111 Identities=11% Similarity=0.062 Sum_probs=88.2
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHHhC--c----chhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhccccc
Q 003195 522 SLICEGIASSSWSSKRKSAKAICKLGEILG--E----SLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDI 595 (840)
Q Consensus 522 ~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~--~----~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~ 595 (840)
..+.+.|++.+..+|-+-...++.++.... + +..+.+..++..|.+++.+..+-.|..+++.+..++.-....
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~- 380 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT- 380 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc-
Confidence 456677899999999999999999886543 1 223346778888899999988889999999999888644332
Q ss_pred ccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcC
Q 003195 596 SAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFR 637 (840)
Q Consensus 596 ~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~ 637 (840)
..-...+...+.+.+.+++..+|+.|+..+.+++..-|
T Consensus 381 ----~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 381 ----VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred ----cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 23467888889999999999999999999999987654
No 94
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.36 E-value=0.0012 Score=65.86 Aligned_cols=108 Identities=11% Similarity=0.168 Sum_probs=80.0
Q ss_pred hhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCC
Q 003195 91 SKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRL 170 (840)
Q Consensus 91 sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~ 170 (840)
-|-.+..++|-++-.-+..++|+ +|.+|..+.|++|.||+.+..+...|+... .-+.-..++..++..+.|++
T Consensus 4 vR~n~i~~l~DL~~r~~~~ve~~----~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d---~ik~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYPNLVEPY----LPNLYKCLRDEDPLVRKTALLVLSHLILED---MIKVKGQLFSRILKLLVDEN 76 (178)
T ss_pred HHHHHHHHHHHHHHhCcHHHHhH----HHHHHHHHCCCCHHHHHHHHHHHHHHHHcC---ceeehhhhhHHHHHHHcCCC
Confidence 34556677777776666666666 666667779999999999999999987542 11123444566777789999
Q ss_pred hhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHH
Q 003195 171 WRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAF 205 (840)
Q Consensus 171 wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~ 205 (840)
++||..|...|.++.....+..+..++++++..+-
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISSLN 111 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 99999999999999887666667777777766553
No 95
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.31 E-value=0.025 Score=59.69 Aligned_cols=313 Identities=12% Similarity=0.107 Sum_probs=152.6
Q ss_pred hchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHH-HHHHHHHhhCCCChh-HHHHHHHHHHHHHcc
Q 003195 110 LKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDL-IFDDLLIQSGSRLWR-SREASCLSLADIIQG 187 (840)
Q Consensus 110 l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~-Il~~Ll~~l~~~~wr-vR~aac~Al~~Ll~~ 187 (840)
+...++++...|| .|.-..--++...--+.|......-++...+. ++|...+.|.+.+.. ..--|++||.++.+|
T Consensus 69 ~~~elp~lt~~l~---SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSG 145 (526)
T COG5064 69 FYSELPQLTQQLF---SDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASG 145 (526)
T ss_pred hhhhhHHHHHHHh---hhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccC
Confidence 3344555555552 33333333334444444544322223322221 334444444332222 244688999999987
Q ss_pred CCchh--hhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccc-cccchHHhHHHhHHHHHHhcccCCch
Q 003195 188 RKFDQ--VGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTL-TEISDARQSMDIVLPFLLAEGILSKV 264 (840)
Q Consensus 188 ~~~~~--l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~-~~~~~~~~~l~~lLP~Ll~~gL~s~~ 264 (840)
.+... +.+ ..-+|.+.++|.+....||+.+. ++++.+.- +... ..-.....+++-+|..|+ ++.
T Consensus 146 tt~QTkvVvd--~~AVPlfiqlL~s~~~~V~eQav---WALGNiAG---DS~~~RD~vL~~galeplL~ll~-----ss~ 212 (526)
T COG5064 146 TTQQTKVVVD--AGAVPLFIQLLSSTEDDVREQAV---WALGNIAG---DSEGCRDYVLQCGALEPLLGLLL-----SSA 212 (526)
T ss_pred cccceEEEEe--CCchHHHHHHHcCchHHHHHHHH---HHhccccC---CchhHHHHHHhcCchHHHHHHHH-----hcc
Confidence 54321 111 14455666668888999999874 44443210 0000 000000012233333322 222
Q ss_pred h--HHHHHHHHHHHHHHHhhccc-cccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHH
Q 003195 265 D--SISKASIGVVMKLVKGAGIA-IRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWD 341 (840)
Q Consensus 265 ~--evr~~al~~L~~la~~~g~~-l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~e 341 (840)
. .+-..+..+|+++++.-.+. =-..+.+.+|.|..++-+..|+++--.+|.....+ .+| +|
T Consensus 213 ~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYls---------------Dg~-~E 276 (526)
T COG5064 213 IHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLS---------------DGP-NE 276 (526)
T ss_pred chHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc---------------cCc-HH
Confidence 2 22335678899999764332 12234566788888877777776655555443211 111 11
Q ss_pred HHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccH---HHHHHHHHHhHhhcCcHHHHH
Q 003195 342 TLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYT---SMLLRLLFPVVKEEKSAAAKR 418 (840)
Q Consensus 342 al~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~---~~lL~~Ll~~l~~d~~~~Vr~ 418 (840)
.++.++.. .+.++|++++.+. +..+..-+++.++.+++ |.+..... --.|+.+.+.| +.+...+||
T Consensus 277 ~i~avld~-------g~~~RLvElLs~~-sa~iqtPalR~vGNIVT--G~D~QTqviI~~G~L~a~~~lL-s~~ke~irK 345 (526)
T COG5064 277 KIQAVLDV-------GIPGRLVELLSHE-SAKIQTPALRSVGNIVT--GSDDQTQVIINCGALKAFRSLL-SSPKENIRK 345 (526)
T ss_pred HHHHHHhc-------CCcHHHHHHhcCc-cccccCHHHHhhcCeee--cCccceehheecccHHHHHHHh-cChhhhhhh
Confidence 22222111 2346666666543 22333346666665543 22211110 12345555556 566679999
Q ss_pred HHHHHHHHhhhcCCHH--H-H-HHHHHHHHHhhc-CChhhhHHHHHHHHHHH
Q 003195 419 AFASACASVLKYATPS--Q-A-QKLIEETAALHI-DDKNSQISCAILLKSYS 465 (840)
Q Consensus 419 ~a~~Alg~l~~~~~~~--~-~-~~li~~l~~~~~-~d~~~r~~~~~~i~ai~ 465 (840)
.++=++..+....... . + .+++++|+.++. .|...|..++-++....
T Consensus 346 EaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNat 397 (526)
T COG5064 346 EACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNAT 397 (526)
T ss_pred hhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9998888776443322 1 1 356778887774 34555666666665543
No 96
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.30 E-value=0.12 Score=58.21 Aligned_cols=268 Identities=10% Similarity=-0.053 Sum_probs=155.1
Q ss_pred hhhhhhHH----hHHHHHHHHhhhhhchhhh-------hHHHHHHhhc-CCCCHhHHHHHHHHHHHhccCChHHHHHHHH
Q 003195 89 LNSKRGAA----FGFSKIAKQAGDALKPHLR-------LLIPKLVRFQ-YDPDKNVQDAMAHIWKSLVADPKRTIDEHLD 156 (840)
Q Consensus 89 w~sr~gA~----~~l~~I~~~~~~~l~~~l~-------~lvP~L~~~~-~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~ 156 (840)
|..|..+. |-|.-+.+ ..+-|+.||. ..++.|...+ .|+.+.|+..+. +.....+...
T Consensus 17 w~~~~~a~~~p~~~l~~la~-ldeRL~AhLdgL~~~G~~a~~~L~~aL~~d~~~ev~~~aa--~al~~~~~~~------- 86 (410)
T TIGR02270 17 WRQWKRALVAPDYVLEDLAE-LEERLLAHVDGLVLAGKAATELLVSALAEADEPGRVACAA--LALLAQEDAL------- 86 (410)
T ss_pred HHHHHHHhcCCCCCHHHHHh-HHHHHHHHHHHHHHhhHhHHHHHHHHHhhCCChhHHHHHH--HHHhccCChH-------
Confidence 66666665 44555543 2334444443 4466666666 688899987543 3222222211
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhc
Q 003195 157 LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDV 236 (840)
Q Consensus 157 ~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~ 236 (840)
.+..|+..+.|.+..||.++..||+.+- .+...+.+...++|.++.||.++..++..- ..+
T Consensus 87 -~~~~L~~~L~d~~~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r------~~~- 147 (410)
T TIGR02270 87 -DLRSVLAVLQAGPEGLCAGIQAALGWLG-----------GRQAEPWLEPLLAASEPPGRAIGLAALGAH------RHD- 147 (410)
T ss_pred -HHHHHHHHhcCCCHHHHHHHHHHHhcCC-----------chHHHHHHHHHhcCCChHHHHHHHHHHHhh------ccC-
Confidence 2556788888888889999999998651 124455566668999999998876544321 111
Q ss_pred cccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhh
Q 003195 237 TLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHA 316 (840)
Q Consensus 237 ~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a 316 (840)
..+.+++. +.+++..||..++.+++.+-. +..+|.|...+.+.+|.+..
T Consensus 148 ----------~~~~L~~~-----L~d~d~~Vra~A~raLG~l~~----------~~a~~~L~~al~d~~~~VR~------ 196 (410)
T TIGR02270 148 ----------PGPALEAA-----LTHEDALVRAAALRALGELPR----------RLSESTLRLYLRDSDPEVRF------ 196 (410)
T ss_pred ----------hHHHHHHH-----hcCCCHHHHHHHHHHHHhhcc----------ccchHHHHHHHcCCCHHHHH------
Confidence 12334443 346778999999999988652 23344555566665554432
Q ss_pred hhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCcccc
Q 003195 317 ANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPY 396 (840)
Q Consensus 317 ~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~ 396 (840)
.+ +..+.. ++. +.-++.+....... |.+.+.....++... -
T Consensus 197 ---------------aA---------~~al~~-lG~---~~A~~~l~~~~~~~-g~~~~~~l~~~lal~----------~ 237 (410)
T TIGR02270 197 ---------------AA---------LEAGLL-AGS---RLAWGVCRRFQVLE-GGPHRQRLLVLLAVA----------G 237 (410)
T ss_pred ---------------HH---------HHHHHH-cCC---HhHHHHHHHHHhcc-CccHHHHHHHHHHhC----------C
Confidence 11 111111 111 11112222222222 555544444443221 2
Q ss_pred HHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHh
Q 003195 397 TSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSS 466 (840)
Q Consensus 397 ~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~ 466 (840)
.+..+..|...+ .|. .||..++.++|.+-. .+.++.+++.. +|+.+++.++.++..|..
T Consensus 238 ~~~a~~~L~~ll-~d~--~vr~~a~~AlG~lg~-------p~av~~L~~~l-~d~~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 238 GPDAQAWLRELL-QAA--ATRREALRAVGLVGD-------VEAAPWCLEAM-REPPWARLAGEAFSLITG 296 (410)
T ss_pred chhHHHHHHHHh-cCh--hhHHHHHHHHHHcCC-------cchHHHHHHHh-cCcHHHHHHHHHHHHhhC
Confidence 236777777777 443 499999999999962 23455555555 455589999999988875
No 97
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.29 E-value=0.0086 Score=59.68 Aligned_cols=161 Identities=9% Similarity=0.056 Sum_probs=100.5
Q ss_pred ChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhc
Q 003195 450 DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIA 529 (840)
Q Consensus 450 d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~ 529 (840)
|+..|..+..+++.++...+ ...+..+|.++....|+++.||..+..++..+.... +-..-+.++..+..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d---~ik~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED---MIKVKGQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC---ceeehhhhhHHHHHHHc
Confidence 35567777777777765555 445556778888889999999998777776655432 22233456566677889
Q ss_pred CCCHHHHHHHHHHHHHHHHHh-CcchhhhHHHHHHHHHHhcCCC---------CchhHHHHHHHHHHHHHhcccccccCC
Q 003195 530 SSSWSSKRKSAKAICKLGEIL-GESLSNYHHVLLESIMKEVPGR---------LWEGKDALLYAIGSISTSCHKDISAED 599 (840)
Q Consensus 530 d~s~~vR~~Aa~~L~~La~~~-~~~l~~~l~~llp~L~~~l~~r---------~~~~Ke~vl~aL~~l~~~~~~~~~~~~ 599 (840)
|++++||..|..++..+.... +..+ ...+|.++..+.+. ..+-+..+...+...+.+ +
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~~~~~~i----~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~--d------ 141 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKKRNPNII----YNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK--D------ 141 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc--H------
Confidence 999999999999999999884 4444 34555555555432 233355555555555432 1
Q ss_pred CCchHHHHHHHHHHHhhc----CHHHHHHHHHHHH
Q 003195 600 PTTPFAIVDMVSSACRKK----IKKYREAAFSCLE 630 (840)
Q Consensus 600 ~~~~~~i~~~l~~~~~~~----~~~~R~~Al~~L~ 630 (840)
.+..+++..+...+... +...-+.++.||.
T Consensus 142 -~~~~~l~~kl~~~~~~~~~~~~~~~~~d~~~~l~ 175 (178)
T PF12717_consen 142 -KQKESLVEKLCQRFLNAVVDEDERVLRDILYCLS 175 (178)
T ss_pred -HHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHH
Confidence 23455555555443332 3455555555543
No 98
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.26 E-value=0.084 Score=60.02 Aligned_cols=236 Identities=12% Similarity=0.148 Sum_probs=130.4
Q ss_pred ccCccccHHHHHHHHHHhHhh---cCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc---C---Chhhh----HH
Q 003195 390 GMDIKPYTSMLLRLLFPVVKE---EKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI---D---DKNSQ----IS 456 (840)
Q Consensus 390 ~~~~~p~~~~lL~~Ll~~l~~---d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~---~---d~~~r----~~ 456 (840)
..++.|+.+.++..|+..+.. ..|+.+-|+..+.+..+-+... +....+++++.+.+. . |+..- ++
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~-p~~~~il~~L~~il~~v~kNPsnP~FnHylFEs 95 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDIL-PIAVEILQHLTAILKEVSKNPSNPRFNHYLFES 95 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTG-GGHHHHHHHHHHHHHHHHTS---HHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHH
Confidence 357889999999999999953 2366666666655544333222 223455555554442 2 33322 23
Q ss_pred HHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCC----chHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCC
Q 003195 457 CAILLKSYSSVASDVLSGYHAVIVPVIFISRFED----DKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSS 532 (840)
Q Consensus 457 ~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~----d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s 532 (840)
.+.++...+...++....+-+.++|.+..-...+ .|+|-+.+..+.+.. + +..+.+....+++.+. ...-
T Consensus 96 i~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~-~--~~~~p~~y~~L~~~Ll---~p~l 169 (435)
T PF03378_consen 96 IGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELR-P--SSPLPDAYKQLFPPLL---SPAL 169 (435)
T ss_dssp HHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHS-S----S--TTTGGGHHHHT---SGGG
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C--CCCCcHHHHHHHHHHc---Ccch
Confidence 4444444444344444556666777554332222 334444444444332 2 1234444444554443 3334
Q ss_pred HHHH---HHHHHHHHHHHHHhCcchh--hhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHH
Q 003195 533 WSSK---RKSAKAICKLGEILGESLS--NYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIV 607 (840)
Q Consensus 533 ~~vR---~~Aa~~L~~La~~~~~~l~--~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~ 607 (840)
|+.| .+..+.|.+..++.+..+. +++..++....+-+..|..+. ..++-|.+++..++..... +|+++|+
T Consensus 170 We~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~--~gF~LL~~iv~~~p~~~l~---~yl~~I~ 244 (435)
T PF03378_consen 170 WERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDH--YGFDLLESIVENLPPEALE---PYLKQIF 244 (435)
T ss_dssp GGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHH--HHHHHHHHHHHHS-HHHHG---GGHHHHH
T ss_pred hccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcch--HHHHHHHHHHHHCCHHHHH---HHHHHHH
Confidence 5432 4455677777777777664 578999999999998886442 3477777888877764333 8999999
Q ss_pred HHHHHHHhh-cCHHHHHHHHHHHHHHHHHcC
Q 003195 608 DMVSSACRK-KIKKYREAAFSCLEQVIKAFR 637 (840)
Q Consensus 608 ~~l~~~~~~-~~~~~R~~Al~~L~~l~~~~~ 637 (840)
..+.+-+.. +..+|++.-+..++-++-..+
T Consensus 245 ~lll~RLq~skT~kf~~~fv~F~~~~~~~~g 275 (435)
T PF03378_consen 245 TLLLTRLQSSKTEKFVKRFVVFLSLFAIKYG 275 (435)
T ss_dssp HHHHHHHHHC--HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHcC
Confidence 988876654 677888888777776665553
No 99
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.7 Score=53.99 Aligned_cols=405 Identities=15% Similarity=0.161 Sum_probs=206.4
Q ss_pred hhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHh------ccCccccHHHHHHHHHHhHhhc------C----------c
Q 003195 356 DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKI------GMDIKPYTSMLLRLLFPVVKEE------K----------S 413 (840)
Q Consensus 356 ~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~------~~~~~p~~~~lL~~Ll~~l~~d------~----------~ 413 (840)
-.++|.+++.+.+..+ .+-.....++.++...+ ...-.-++.+++...++.+..| . .
T Consensus 334 l~~vpyllq~l~~e~d-dit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f 412 (980)
T KOG2021|consen 334 LEIVPYLLQFLNNEFD-DITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFF 412 (980)
T ss_pred HHHHHHHHHHhcccch-hhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHH
Confidence 3478888888765522 22333445555543322 2333456778888888887422 1 2
Q ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHH-HHHHhhc--CChhh--hHHHHHHHHHHHhhchhh-h-------h--hhHhh
Q 003195 414 AAAKRAFASACASVLKYATPSQAQKLIE-ETAALHI--DDKNS--QISCAILLKSYSSVASDV-L-------S--GYHAV 478 (840)
Q Consensus 414 ~~Vr~~a~~Alg~l~~~~~~~~~~~li~-~l~~~~~--~d~~~--r~~~~~~i~ai~~~~~~~-f-------~--~~~~~ 478 (840)
.++|+....=...+....+ +.+...+. .+...+. .++++ -..+...+-.++...+.. + . ..+..
T Consensus 413 ~e~RkkLk~fqdti~~idp-sl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~ 491 (980)
T KOG2021|consen 413 EEVRKKLKNFQDTIVVIDP-SLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFL 491 (980)
T ss_pred HHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHH
Confidence 3567665554454444433 22222111 1111111 12222 234444455554433211 1 0 22233
Q ss_pred HhHHHHHhh--cCCchHHHHHHHHHH---HHhcCCChhhHHhhHHHHHHHHH--hhhcCCCHHHHHHHHHHHHHHHHHhC
Q 003195 479 IVPVIFISR--FEDDKYVSDLFEELW---EENTSGDRVTLQLYLGEIVSLIC--EGIASSSWSSKRKSAKAICKLGEILG 551 (840)
Q Consensus 479 llP~l~~~~--~d~d~~vr~~~~~i~---~~~~~~~~~~i~~yl~~Il~~l~--~~L~d~s~~vR~~Aa~~L~~La~~~~ 551 (840)
.+|++.... .-+.+-|.-.|.+.. ..+.... ..|.|-++..+. +++...+..||..|.+.....++.+.
T Consensus 492 ~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e----sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLk 567 (980)
T KOG2021|consen 492 NELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE----SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLK 567 (980)
T ss_pred HHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc----hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHH
Confidence 455443321 123344443333321 1111111 235666666654 35667899999999999999999888
Q ss_pred cchhhhHHHHHHHHHHhcCC---------CC---c-hh------------------------------------------
Q 003195 552 ESLSNYHHVLLESIMKEVPG---------RL---W-EG------------------------------------------ 576 (840)
Q Consensus 552 ~~l~~~l~~llp~L~~~l~~---------r~---~-~~------------------------------------------ 576 (840)
..+-||.+.++.-+..-|.. ++ + ++
T Consensus 568 kqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~ 647 (980)
T KOG2021|consen 568 KQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLF 647 (980)
T ss_pred HHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHH
Confidence 88888888777777666621 10 0 00
Q ss_pred ---------------HHHHHHHHHHHHHhcccccccCCCC----chHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHH
Q 003195 577 ---------------KDALLYAIGSISTSCHKDISAEDPT----TPFAIVDMVSSACR--KKIKKYREAAFSCLEQVIKA 635 (840)
Q Consensus 577 ---------------Ke~vl~aL~~l~~~~~~~~~~~~~~----~~~~i~~~l~~~~~--~~~~~~R~~Al~~L~~l~~~ 635 (840)
=.-++.|++.+++|..........+ ....+..++...+. .+....|.+.-..+++++..
T Consensus 648 a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~ 727 (980)
T KOG2021|consen 648 AQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPI 727 (980)
T ss_pred HHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHh
Confidence 1234556666666665433111111 23444455554333 35678899999999999998
Q ss_pred cCCcchHHhHHHHHHhhcccccccCCCCCCCCCCccchhhhccccCCchhHHHhhhhhhHHhhc--hhhHHHhh-hhhHH
Q 003195 636 FRDPKFFNIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADESVSAPLDKVLDCVSSCIHVAH--VNDIIEQE-KNLVQ 712 (840)
Q Consensus 636 ~~~~~l~~~v~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~l~~ 712 (840)
+++ ++...++..+..+-.+ +|. + -+..|+..+.-.|+.+| --++++++ ..|+.
T Consensus 728 lg~-~vlPfipklie~lL~s------------~d~-----k------Emvdfl~flsQLihkfk~~~~~ilnqmlppll~ 783 (980)
T KOG2021|consen 728 LGN-KVLPFIPKLIELLLSS------------TDL-----K------EMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLN 783 (980)
T ss_pred cch-hhhcchHHHHHHHHhc------------CCH-----H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876 5555555555555333 111 1 12266666655555555 22333331 23333
Q ss_pred HHHhhcC----CCCCh---------HHHHHHHHhhhcCCCCC-CCccchhHHHHHHHhhhhhhhhhhcccchhhhhhHhh
Q 003195 713 LFTISLS----PGFPW---------TELCSRLQKTLDDSAGT-SPHAGISSLIQELFHTVSPKVVECISTVKIAQVHISA 778 (840)
Q Consensus 713 ~~~~~~~----~~~~~---------~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~vr~~a 778 (840)
.|...+. +.++= ...|+-+++.+...... -.+.+...++.-+.+.+.+.-..-+| +-++...
T Consensus 784 rIfsvi~r~a~p~dt~aa~ek~~lrksy~~fLqtftn~g~~silat~~n~~~~~~iln~l~~~a~~y~d----pmmQksl 859 (980)
T KOG2021|consen 784 RIFSVIERIAKPIDTAAAAEKILLRKSYCTFLQTFTNNGVTSILATDINRAILPVILNDLVTYAPQYID----PMMQKSL 859 (980)
T ss_pred HHHHHhcccCCCCChhHHHHHHHHHHHHHHHHHHHhcCCcceeeeccchhhhhhHHHHHhhhccccccC----HHHHHHH
Confidence 3333331 01110 04455555554322111 11233444444555555555555555 6788888
Q ss_pred hHHHHHHHHHhhhccc
Q 003195 779 SECLLEICKLFRQISS 794 (840)
Q Consensus 779 ~~~l~~i~~~~~~~~~ 794 (840)
+...+.+++.-|..|-
T Consensus 860 n~lcnk~v~lwggkdg 875 (980)
T KOG2021|consen 860 NVLCNKIVCLWGGKDG 875 (980)
T ss_pred HHHHHHHHHhcCCcCC
Confidence 8889999988865444
No 100
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.19 E-value=0.37 Score=53.41 Aligned_cols=278 Identities=13% Similarity=0.074 Sum_probs=154.3
Q ss_pred CchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCC-----HHHH-HHHHHH--H
Q 003195 372 LNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT-----PSQA-QKLIEE--T 443 (840)
Q Consensus 372 ~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~-----~~~~-~~li~~--l 443 (840)
-++|.+|.+++..+++.+|. ...|.-++.+.+-..+ .+..+++..+++..+..+..... +..- ...... +
T Consensus 269 s~~rle~~qvl~~~a~~~~~-~~~~~~~l~RvI~~~~-~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~ 346 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYFSM-TQAYLMELGRVICKCM-GEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT 346 (728)
T ss_pred chhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHccC-CCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence 46899999999999888763 4467777888887777 67888998888877765543221 1100 000010 1
Q ss_pred HHh--------hc-CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchH-HHHHHHHHHHHh-cCCChhh
Q 003195 444 AAL--------HI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKY-VSDLFEELWEEN-TSGDRVT 512 (840)
Q Consensus 444 ~~~--------~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~-vr~~~~~i~~~~-~~~~~~~ 512 (840)
+-. |. ..+....+.+..+..|....-..|-+-.....|..+.|+.|..+. ++........-. ...+...
T Consensus 347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~ 426 (728)
T KOG4535|consen 347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQ 426 (728)
T ss_pred HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhh
Confidence 111 10 012234455566656554443444333335666555666643332 332222211111 1122234
Q ss_pred HHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhh---hHHHHHHHH--------HHhcCCCCchhHHHHH
Q 003195 513 LQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSN---YHHVLLESI--------MKEVPGRLWEGKDALL 581 (840)
Q Consensus 513 i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~---~l~~llp~L--------~~~l~~r~~~~Ke~vl 581 (840)
...++..-.+.+...+.|.+...|..++-++|.+...+-..... +-..+...+ ..+..++ .-+|...+
T Consensus 427 d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~-dkV~~nav 505 (728)
T KOG4535|consen 427 DVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADK-DKVKSNAV 505 (728)
T ss_pred hHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHH
Confidence 55666777788888899999999999999999998766543322 222233322 2222232 35678888
Q ss_pred HHHHHHHHhcccccccCCCC-chHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHc----CCcchHHhHHHHHHhh
Q 003195 582 YAIGSISTSCHKDISAEDPT-TPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAF----RDPKFFNIIFPLLFEM 652 (840)
Q Consensus 582 ~aL~~l~~~~~~~~~~~~~~-~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~----~~~~l~~~v~~i~~~l 652 (840)
++|+.+.+-...-..-.+.. .-..+.+-+.++..+.+.++|=.|..++|.+.+.- .+.....++++++-.+
T Consensus 506 raLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~L 581 (728)
T KOG4535|consen 506 RALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSL 581 (728)
T ss_pred HHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHH
Confidence 88888875433111000000 11233444444555668899999999999998642 2223444555544443
No 101
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.19 E-value=0.078 Score=60.28 Aligned_cols=278 Identities=13% Similarity=0.122 Sum_probs=156.0
Q ss_pred HhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHh----hcCcHHHHHHHHHHHHHhhhc
Q 003195 355 LDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVK----EEKSAAAKRAFASACASVLKY 430 (840)
Q Consensus 355 l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~----~d~~~~Vr~~a~~Alg~l~~~ 430 (840)
.+.++..|...++.+ +-..-.-..+++..+....+..+.|+.+.+++.+...+. +..|+.---+..+++|.++++
T Consensus 24 ~~~ll~~Lf~~i~~~-~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~ 102 (435)
T PF03378_consen 24 AQQLLQNLFALIEKP-GSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRF 102 (435)
T ss_dssp HHHHHHHHHHHHHTT--STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHh
Confidence 355677777777654 222233466777777788899999999999998888773 566788888889999999998
Q ss_pred CCHH---HH----HHHHHHHHHhhcCC-hhhhHHHHHHHHHHHhhch-hhhhhhHhhHhHHHHHh-hcCCchHHHHHHHH
Q 003195 431 ATPS---QA----QKLIEETAALHIDD-KNSQISCAILLKSYSSVAS-DVLSGYHAVIVPVIFIS-RFEDDKYVSDLFEE 500 (840)
Q Consensus 431 ~~~~---~~----~~li~~l~~~~~~d-~~~r~~~~~~i~ai~~~~~-~~f~~~~~~llP~l~~~-~~d~d~~vr~~~~~ 500 (840)
.... .+ ..+++.+..-+..| .+.---+-+++..+....+ +.+.+.+..++|.++.. ..+...++- ....
T Consensus 103 ~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniP-alvr 181 (435)
T PF03378_consen 103 VCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIP-ALVR 181 (435)
T ss_dssp S-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHH-HHHH
T ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcC-cHHH
Confidence 6532 22 23344444444333 2222223455555555444 33444444466555432 222222221 1122
Q ss_pred HHHHhcCCChhhH--HhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCc-chhhhHHHHHHHHHHhcC-CCCchh
Q 003195 501 LWEENTSGDRVTL--QLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE-SLSNYHHVLLESIMKEVP-GRLWEG 576 (840)
Q Consensus 501 i~~~~~~~~~~~i--~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~-~l~~~l~~llp~L~~~l~-~r~~~~ 576 (840)
++..+....+..+ ..++..|+..+.+.+.+..-+ ..|+..|..+...++. .+.+|+++++..+..+++ .|++.-
T Consensus 182 LL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf 259 (435)
T PF03378_consen 182 LLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKF 259 (435)
T ss_dssp HHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHH
T ss_pred HHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHH
Confidence 2333222222222 367788999999999887633 6799999999999986 589999999999999996 556554
Q ss_pred HHHHHHHHHHHHHhcccccc-----cCCCCchHHHHH-HHHHHHhh-cCHHHHHHHHHHHHHHHHHc
Q 003195 577 KDALLYAIGSISTSCHKDIS-----AEDPTTPFAIVD-MVSSACRK-KIKKYREAAFSCLEQVIKAF 636 (840)
Q Consensus 577 Ke~vl~aL~~l~~~~~~~~~-----~~~~~~~~~i~~-~l~~~~~~-~~~~~R~~Al~~L~~l~~~~ 636 (840)
+...+..+..++...+.... .-.+.....++. .+....++ .+..=|+.+.-.+.+++...
T Consensus 260 ~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es 326 (435)
T PF03378_consen 260 VKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCES 326 (435)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhcc
Confidence 44555555544443332110 001123334443 33445543 34555888888888877543
No 102
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.14 E-value=0.00065 Score=46.48 Aligned_cols=30 Identities=10% Similarity=0.227 Sum_probs=26.8
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHHHH
Q 003195 520 IVSLICEGIASSSWSSKRKSAKAICKLGEI 549 (840)
Q Consensus 520 Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~ 549 (840)
|+|.+.+.++|++|+||.+|+.+|+.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999999875
No 103
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.13 E-value=0.00067 Score=46.41 Aligned_cols=30 Identities=20% Similarity=0.118 Sum_probs=26.4
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHcc
Q 003195 158 IFDDLLIQSGSRLWRSREASCLSLADIIQG 187 (840)
Q Consensus 158 Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~ 187 (840)
|+|.+++.+.|++|+||++|+.+|+.+.+.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 688899999999999999999999998754
No 104
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.13 E-value=0.0051 Score=60.40 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=85.9
Q ss_pred hHhHHHHHhhcCCchHHHHHHHHHHHHhcC-CChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHH---HHHhCcc
Q 003195 478 VIVPVIFISRFEDDKYVSDLFEELWEENTS-GDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKL---GEILGES 553 (840)
Q Consensus 478 ~llP~l~~~~~d~d~~vr~~~~~i~~~~~~-~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~L---a~~~~~~ 553 (840)
.++|..+.|..+.+..-+..+.+-..++.. +.+..+-+.+|+++.-+.++|++.+.+|...+.++|..| ....|+.
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 478888888887655555444333333332 355678899999999999999999999999999999999 5678899
Q ss_pred hhhhHHHHHHHHH----Hhc--C-----CCCchhHHHHHHHHHHHHHhccc
Q 003195 554 LSNYHHVLLESIM----KEV--P-----GRLWEGKDALLYAIGSISTSCHK 593 (840)
Q Consensus 554 l~~~l~~llp~L~----~~l--~-----~r~~~~Ke~vl~aL~~l~~~~~~ 593 (840)
+.||+.+++|.+- +.. . .+..+.++.|-++|..+-+.+++
T Consensus 118 LvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~ 168 (183)
T PF10274_consen 118 LVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGP 168 (183)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcCh
Confidence 9999999999987 221 1 12245567777777777665553
No 105
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.10 E-value=0.12 Score=56.98 Aligned_cols=173 Identities=18% Similarity=0.211 Sum_probs=105.7
Q ss_pred hHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHH
Q 003195 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDE 153 (840)
Q Consensus 74 ~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~ 153 (840)
.-++.+..+..+. +|.-|.+|+..++.+-. ...+|.|.....|+++.||..+..+.+.+-. ++
T Consensus 43 ~~~~~~~~~l~~~-~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~------~~ 105 (335)
T COG1413 43 EAADELLKLLEDE-DLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAAADALGELGD------PE 105 (335)
T ss_pred hhHHHHHHHHcCC-CHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC------hh
Confidence 3455555554444 57888888866544322 3368888888999999999999886665532 22
Q ss_pred HHHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccH------------HHHHHHH
Q 003195 154 HLDLIFDDLLIQSG-SRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKE------------TVRTAGD 220 (840)
Q Consensus 154 ~~~~Il~~Ll~~l~-~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~------------~VR~aA~ 220 (840)
..+. ++..+. |.+|.||..+..+|+.+-..+. +..++..++|... .+|.++.
T Consensus 106 a~~~----li~~l~~d~~~~vR~~aa~aL~~~~~~~a-----------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 106 AVPP----LVELLENDENEGVRAAAARALGKLGDERA-----------LDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred HHHH----HHHHHHcCCcHhHHHHHHHHHHhcCchhh-----------hHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 2333 333333 7899999999999988754322 3344455566552 3455443
Q ss_pred HHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHh
Q 003195 221 KLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLES 300 (840)
Q Consensus 221 ~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ 300 (840)
..+..++ + +...|.+. .++.+....+|..+...++.+.... ..+.+.+...
T Consensus 171 ~~l~~~~-------~-------------~~~~~~l~-~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~ 221 (335)
T COG1413 171 EALGELG-------D-------------PEAIPLLI-ELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKA 221 (335)
T ss_pred HHHHHcC-------C-------------hhhhHHHH-HHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHH
Confidence 3332221 0 12234333 2455566789999999888776432 4566777777
Q ss_pred ccCchhH
Q 003195 301 LSSLEDQ 307 (840)
Q Consensus 301 ls~~ep~ 307 (840)
+++....
T Consensus 222 ~~~~~~~ 228 (335)
T COG1413 222 LSDESLE 228 (335)
T ss_pred hcCCCHH
Confidence 7765443
No 106
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.03 E-value=0.17 Score=54.96 Aligned_cols=136 Identities=13% Similarity=0.212 Sum_probs=97.5
Q ss_pred hhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccH---------HHHHHHHHHhHhhcCcHHHHH
Q 003195 348 NVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYT---------SMLLRLLFPVVKEEKSAAAKR 418 (840)
Q Consensus 348 ~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~---------~~lL~~Ll~~l~~d~~~~Vr~ 418 (840)
..+|.+...+.++.+...++.+ +.++|..|++++.++...+|..+.+.. ..+++.+...+ .+.++.++.
T Consensus 55 ~Lld~~~a~~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~ 132 (298)
T PF12719_consen 55 CLLDKELAKEHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFL-DSENPELQA 132 (298)
T ss_pred HHhChHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHH-hcCCHHHHH
Confidence 3456666677788888888665 778899999999999999986554332 36889999998 566899999
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHhhc-----CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHH
Q 003195 419 AFASACASVLKYATPSQAQKLIEETAALHI-----DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFI 485 (840)
Q Consensus 419 ~a~~Alg~l~~~~~~~~~~~li~~l~~~~~-----~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~ 485 (840)
.++.++..++-...-....+++..++-.|+ ++...|+..+.++..++...+..-....+.++|.+..
T Consensus 133 ~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~ 204 (298)
T PF12719_consen 133 IAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRT 204 (298)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 999999998744322223455666666675 2456788888888888776665444555667776654
No 107
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.044 Score=60.87 Aligned_cols=123 Identities=14% Similarity=0.134 Sum_probs=96.1
Q ss_pred hhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccc
Q 003195 515 LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKD 594 (840)
Q Consensus 515 ~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~ 594 (840)
+.+..++..+..-..|++..+|+.|+.+|+.++.-.++....|.++++..++.+|-+..- ++.+++++..+..-.+..
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~--~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLN--EEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHhh
Confidence 456667777778889999999999999999999988888888999999999999976432 677777777776544432
Q ss_pred cccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCc
Q 003195 595 ISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP 639 (840)
Q Consensus 595 ~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~ 639 (840)
......+|.-.|.-.+....++.+++.|.+|+..+|.+....+++
T Consensus 332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~ 376 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGG 376 (533)
T ss_pred hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCC
Confidence 111123566666666777777789999999999999999988764
No 108
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.99 E-value=0.47 Score=59.98 Aligned_cols=353 Identities=11% Similarity=0.082 Sum_probs=184.0
Q ss_pred hhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHh--cccCCc-hh--
Q 003195 191 DQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLA--EGILSK-VD-- 265 (840)
Q Consensus 191 ~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~--~gL~s~-~~-- 265 (840)
..+.|+...|+...| |+.....||--.. ..++.+ .|.+.|... .....+..|..+++. .||.+. ++
T Consensus 44 ~~~~pl~~~l~~~~~--L~h~d~dvrllva---cCvsei-lRi~aPeaP---y~~~~lkdIf~~~~~q~~gL~d~~sp~f 114 (1266)
T KOG1525|consen 44 ASLLPLADHLIKDFL--LKHKDKDVRLLVA---CCVSEI-LRIYAPEAP---YTDEQLKDIFQLILSQFSGLGDVESPYF 114 (1266)
T ss_pred HHHHHHHHHHhhHHH--hcCCCcChhHHHH---HHHHHH-HHHhCCCCC---CcHHHHHHHHHHHHHHHhhccCCCCcch
Confidence 357777777777765 7777777876432 234443 577776532 122355555555543 366642 11
Q ss_pred HHHHHHHHHHHHHHHhhccccccchHHHHHHHHH----hccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHH
Q 003195 266 SISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLE----SLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWD 341 (840)
Q Consensus 266 evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~----~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~e 341 (840)
.-+-+-++++..+. -+--..-|--.++++.+.. .+....|+.+.. |..
T Consensus 115 ~r~~~lletl~~~k-~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~---------------------------~~~ 166 (1266)
T KOG1525|consen 115 KRYFYLLETLAKVK-FCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFN---------------------------MLD 166 (1266)
T ss_pred hhHHHHHHHHHHhH-HHheeeccchHHHHHHHHHHHHHHHhccccHHHHH---------------------------HHH
Confidence 12233455555544 2111111222233333333 222222221110 222
Q ss_pred HHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHH
Q 003195 342 TLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFA 421 (840)
Q Consensus 342 al~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~ 421 (840)
.+..++...|.-....+.-.+.++++. +-.+..+|.+.-..+..+++..+.+....++...+..- ..+-..++..+-
T Consensus 167 i~~~li~e~d~v~~e~L~~ll~~lv~~--~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~-~s~~~~~~~~~h 243 (1266)
T KOG1525|consen 167 IAIMLITEEDTVQSELLDVLLENLVKP--GRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEY-KSRQSSLKIKYH 243 (1266)
T ss_pred HHHHHHHhhccchHHHHHHHHHHhccC--CCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhc-cccccchhhHHH
Confidence 222333332221112222222333332 34456788888888999999998888877777666554 224444555555
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHH
Q 003195 422 SACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEE 500 (840)
Q Consensus 422 ~Alg~l~~~~~~~~~~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~ 500 (840)
.-+-.+.+.+ ++.+...++++...+. +++..|..+..++|.+.......+..-++.+.-..+....|-..+||-.|.+
T Consensus 244 e~i~~L~~~~-p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~ 322 (1266)
T KOG1525|consen 244 ELILELWRIA-PQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVE 322 (1266)
T ss_pred HHHHHHHHhh-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHH
Confidence 5555555443 3456677888877765 6788999888888887655444333222223322223346778888877665
Q ss_pred HHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHH
Q 003195 501 LWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDAL 580 (840)
Q Consensus 501 i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~v 580 (840)
.-....-+.+. +.. ...++-.+....-|...++|........+..... ..+.+.++..+-.++.++-|.+|..+
T Consensus 323 ~~~~~l~~~~~-~~~-~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~----l~~~~~ll~~~~eR~rDKk~~VR~~A 396 (1266)
T KOG1525|consen 323 SIKQCLLNNPS-IAK-ASTILLALRERDLDEDVRVRTQVVIVACDVMKFK----LVYIPLLLKLVAERLRDKKIKVRKQA 396 (1266)
T ss_pred HhHHHHhcCch-hhh-HHHHHHHHHhhcCChhhhheeeEEEEEeehhHhh----hhhhHHHHHHHHHHHhhhhHHHHHHH
Confidence 54443332211 100 1112222222333444444444333333332211 12334488888888899999999999
Q ss_pred HHHHHHHHHh
Q 003195 581 LYAIGSISTS 590 (840)
Q Consensus 581 l~aL~~l~~~ 590 (840)
+..|..+-+.
T Consensus 397 m~~LaqlYk~ 406 (1266)
T KOG1525|consen 397 MNGLAQLYKN 406 (1266)
T ss_pred HHHHHHHHHH
Confidence 9999988774
No 109
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.61 Score=54.85 Aligned_cols=428 Identities=12% Similarity=0.099 Sum_probs=204.7
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCC-chhhhH
Q 003195 117 LIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRK-FDQVGK 195 (840)
Q Consensus 117 lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~-~~~l~~ 195 (840)
.++.+..-+.||+|.+|--+.+-...+- +++..+.+..-+...+.|.+.-||..+....+.+-.-.. ...-.+
T Consensus 87 avnt~~kD~~d~np~iR~lAlrtm~~l~------v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~g 160 (734)
T KOG1061|consen 87 AVNTFLKDCEDPNPLIRALALRTMGCLR------VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSG 160 (734)
T ss_pred hhhhhhccCCCCCHHHHHHHhhceeeEe------ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccc
Confidence 4666677789999999987765554443 333444555558889999999999988777766644211 111222
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHH-HHH
Q 003195 196 HLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKAS-IGV 274 (840)
Q Consensus 196 ~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~a-l~~ 274 (840)
.++.+ -..+.|.++.|-..|..++..+.+. +++.+......+....+|-.+ .+.-+++ +.+
T Consensus 161 l~~~L----~~ll~D~~p~VVAnAlaaL~eI~e~-----~~~~~~~~l~~~~~~~lL~al---------~ec~EW~qi~I 222 (734)
T KOG1061|consen 161 LVDAL----KDLLSDSNPMVVANALAALSEIHES-----HPSVNLLELNPQLINKLLEAL---------NECTEWGQIFI 222 (734)
T ss_pred hhHHH----HHHhcCCCchHHHHHHHHHHHHHHh-----CCCCCcccccHHHHHHHHHHH---------HHhhhhhHHHH
Confidence 33333 3335588888877776666555332 111111111112222222211 1111122 333
Q ss_pred HHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcCh--
Q 003195 275 VMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDT-- 352 (840)
Q Consensus 275 L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~-- 352 (840)
+..++....++-.+ +..++..+..-+....+.++ +.. ...+-..+.+...
T Consensus 223 L~~l~~y~p~d~~e-a~~i~~r~~p~Lqh~n~avv----------------lsa-----------vKv~l~~~~~~~~~~ 274 (734)
T KOG1061|consen 223 LDCLAEYVPKDSRE-AEDICERLTPRLQHANSAVV----------------LSA-----------VKVILQLVKYLKQVN 274 (734)
T ss_pred HHHHHhcCCCCchh-HHHHHHHhhhhhccCCcceE----------------eeh-----------HHHHHHHHHHHHHHH
Confidence 44444433332111 12333333333332222110 000 0111122222222
Q ss_pred -hhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHh---hcCcHHHHHHHHHHHHHhh
Q 003195 353 -ESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVK---EEKSAAAKRAFASACASVL 428 (840)
Q Consensus 353 -~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~---~d~~~~Vr~~a~~Alg~l~ 428 (840)
..+.++.|.+..++... + ...-.+++=+..+..+.+. ++..-+..+. +|+ -.|...= +..+.
T Consensus 275 ~~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~--------~~~~~~~~Ff~kynDP-iYvK~eK---leil~ 340 (734)
T KOG1061|consen 275 ELLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPE--------ILKVEIKVFFCKYNDP-IYVKLEK---LEILI 340 (734)
T ss_pred HHHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChH--------HHHhHhHeeeeecCCc-hhhHHHH---HHHHH
Confidence 33455555555544332 1 2222444444444444433 2222222221 233 2333222 22333
Q ss_pred hcCCHHHHHHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcC-CchHHHHHHHHHHHHhc
Q 003195 429 KYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFE-DDKYVSDLFEELWEENT 506 (840)
Q Consensus 429 ~~~~~~~~~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d-~d~~vr~~~~~i~~~~~ 506 (840)
+.+.+..+..++..+.+-.. -|.+.-+.+..++|.++....+. ..+.+.+++++-. +.| -..++.-.+.+++
T Consensus 341 ~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-~~cv~~lLell~~-~~~yvvqE~~vvi~dil---- 414 (734)
T KOG1061|consen 341 ELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-NDCVSILLELLET-KVDYVVQEAIVVIRDIL---- 414 (734)
T ss_pred HHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHHhh-cccceeeehhHHHHhhh----
Confidence 34455555555555544332 25555556678888887766665 5566666665422 222 1222222222222
Q ss_pred CCChhhHHhhHHHHHHHHHhhhcCC-CHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 003195 507 SGDRVTLQLYLGEIVSLICEGIASS-SWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIG 585 (840)
Q Consensus 507 ~~~~~~i~~yl~~Il~~l~~~L~d~-s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~ 585 (840)
...+. ..+.+++.+...+.+- +++.|. ++-.+...+++.+. ....++..+++.+.+++-.++-.++.|..
T Consensus 415 RkyP~----~~~~vv~~l~~~~~sl~epeak~----amiWilg~y~~~i~-~a~elL~~f~en~~dE~~~Vql~LLta~i 485 (734)
T KOG1061|consen 415 RKYPN----KYESVVAILCENLDSLQEPEAKA----ALIWILGEYAERIE-NALELLESFLENFKDETAEVQLELLTAAI 485 (734)
T ss_pred hcCCC----chhhhhhhhcccccccCChHHHH----HHHHHHhhhhhccC-cHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 22221 1245666666665553 344443 44445545555543 45778999999999988777766666655
Q ss_pred HHHHhcccccccCCCCchHHHHHHHHHHHh-h-cCHHHHHHHHHHHHHHHH
Q 003195 586 SISTSCHKDISAEDPTTPFAIVDMVSSACR-K-KIKKYREAAFSCLEQVIK 634 (840)
Q Consensus 586 ~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~-~~~~~R~~Al~~L~~l~~ 634 (840)
-+.-+.+ +--+.++..+...+- + +++..|-.++. .|++..
T Consensus 486 k~Fl~~p--------~~tq~~l~~vL~~~~~d~~~~dlrDr~l~-Y~RlLs 527 (734)
T KOG1061|consen 486 KLFLKKP--------TETQELLQGVLPLATADTDNPDLRDRGLI-YWRLLS 527 (734)
T ss_pred HHHhcCC--------ccHHHHHHHHHhhhhccccChhhhhhHHH-HHHHhh
Confidence 5543322 123555555555433 2 57789998864 566665
No 110
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=1.5 Score=51.73 Aligned_cols=199 Identities=16% Similarity=0.154 Sum_probs=126.3
Q ss_pred hHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhch-hhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCC-----
Q 003195 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKP-HLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP----- 147 (840)
Q Consensus 74 ~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~-~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~----- 147 (840)
+-|.++.+-+.++....-||.|+.||-+...+-+..+.. -+..++-.|-|=+.||. .|..+...+...+..|.
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E-~ik~~LdTl~il~~~dd~~~v~ 100 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPE-IIKYALDTLLILTSHDDSPEVM 100 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHH-HHHHHHHHHHHHHhcCcchhhc
Confidence 346777787778777889999999998888876554432 24456666655555553 34444444555544431
Q ss_pred ---h--HH----HHHHH---HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchh--hhHHHHHHHHHHHHHhccccH
Q 003195 148 ---K--RT----IDEHL---DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQ--VGKHLRRIWTAAFRAMDDIKE 213 (840)
Q Consensus 148 ---~--~~----i~~~~---~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~--l~~~L~~l~~~l~~~ldD~~~ 213 (840)
+ +. +.+.| +..+..|+..+...+.+||-.+..-|..++..++.+- ..--.|.-+..+..+++|..+
T Consensus 101 dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE 180 (970)
T KOG0946|consen 101 DDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSRE 180 (970)
T ss_pred ccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhh
Confidence 1 00 11111 2344556677777889999999999999999887652 223456777888888999999
Q ss_pred HHHHHHHHHHHHHHHHH--HHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHh
Q 003195 214 TVRTAGDKLCRSVTSLT--IRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKG 281 (840)
Q Consensus 214 ~VR~aA~~~~~~l~~~~--ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~ 281 (840)
.+|..|.-++..+.+-+ +..+ .....++..++.++-+.|=. +.-=|-.-|+..+.++.+.
T Consensus 181 ~IRNe~iLlL~eL~k~n~~IQKl-------VAFENaFerLfsIIeeEGg~-dGgIVveDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 181 PIRNEAILLLSELVKDNSSIQKL-------VAFENAFERLFSIIEEEGGL-DGGIVVEDCLILLNNLLKN 242 (970)
T ss_pred hhchhHHHHHHHHHccCchHHHH-------HHHHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHHHHhh
Confidence 99999988777764311 1111 12334556666655444411 2223556677888888875
No 111
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.35 Score=56.26 Aligned_cols=159 Identities=12% Similarity=0.024 Sum_probs=88.2
Q ss_pred hcCcHHHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhc
Q 003195 410 EEKSAAAKRAFASACASVL-KYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRF 488 (840)
Q Consensus 410 ~d~~~~Vr~~a~~Alg~l~-~~~~~~~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~ 488 (840)
.|.++..|..-+-+++.-. -..+...+.+++...+. ..|+++|+++..++|-+...-++.. |-+.....
T Consensus 529 ~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~dp~~~--------~s~V~lLs 598 (929)
T KOG2062|consen 529 RDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFRDPEQL--------PSTVSLLS 598 (929)
T ss_pred cCCchhhhhhhHHHHHHHHhccCchhhHHHhhccccc--ccchHHHHHHHHHheeeEecChhhc--------hHHHHHHh
Confidence 6677777765554443221 11222333333322111 1357788888888887765555422 22211112
Q ss_pred -CCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHH
Q 003195 489 -EDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMK 567 (840)
Q Consensus 489 -d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~ 567 (840)
.-++.||--..-++.-.+.|++ ..+-+.++.....|+.-=||+.|.-+++-+.-...+.+-|.+..+-..+.+
T Consensus 599 es~N~HVRyGaA~ALGIaCAGtG------~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~k 672 (929)
T KOG2062|consen 599 ESYNPHVRYGAAMALGIACAGTG------LKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEK 672 (929)
T ss_pred hhcChhhhhhHHHHHhhhhcCCC------cHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHH
Confidence 2355677543333433344432 233445555566788888899888888877766666666777777777777
Q ss_pred hcCCCCchhHHHHHHHHHHHH
Q 003195 568 EVPGRLWEGKDALLYAIGSIS 588 (840)
Q Consensus 568 ~l~~r~~~~Ke~vl~aL~~l~ 588 (840)
-+.++..++ +.-|++++
T Consensus 673 vI~dKhEd~----~aK~GAil 689 (929)
T KOG2062|consen 673 VINDKHEDG----MAKFGAIL 689 (929)
T ss_pred HhhhhhhHH----HHHHHHHH
Confidence 777764443 66666654
No 112
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.86 E-value=0.0063 Score=52.60 Aligned_cols=86 Identities=15% Similarity=0.143 Sum_probs=66.4
Q ss_pred HHHHHhhh-cCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCC
Q 003195 521 VSLICEGI-ASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAED 599 (840)
Q Consensus 521 l~~l~~~L-~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~ 599 (840)
++.+.+.+ +|++|.+|..++.+||.+. -+..+|.|.+.+++.+|.+|..++.+|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence 35566667 8999999999999999221 2478899999999999999999999998662
Q ss_pred CCchHHHHHHHHHHHhh-cCHHHHHHHHHHHH
Q 003195 600 PTTPFAIVDMVSSACRK-KIKKYREAAFSCLE 630 (840)
Q Consensus 600 ~~~~~~i~~~l~~~~~~-~~~~~R~~Al~~L~ 630 (840)
-+..++.+.+.+.+ ++..+|..|+.+||
T Consensus 60 ---~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ---DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 14455666666655 46677999999886
No 113
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.84 E-value=0.6 Score=53.03 Aligned_cols=152 Identities=11% Similarity=0.118 Sum_probs=96.1
Q ss_pred hhhchhhhhHHHHHHhhcCCCCH--hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 003195 108 DALKPHLRLLIPKLVRFQYDPDK--NVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADII 185 (840)
Q Consensus 108 ~~l~~~l~~lvP~L~~~~~Dp~~--~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll 185 (840)
+.+.....+++-+++.+...|.- +|-+-....+....++.+.. .+.+++++..++.+..+++..||.-+|.-++-+.
T Consensus 41 ~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg-~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~ 119 (885)
T COG5218 41 HEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEG-EELVAGTFYHLLRGTESKDKKVRKRSLQILALLS 119 (885)
T ss_pred HhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhh-hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHH
Confidence 34555566777777777776532 23333445555444444333 5678889999999999999999999999888776
Q ss_pred ccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchh
Q 003195 186 QGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVD 265 (840)
Q Consensus 186 ~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~ 265 (840)
.... +.-+.....++.++..-+=|-.+.||..|...+..+.... ++ .-..+.+ ++-++++ .+++.
T Consensus 120 d~v~-eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~--------~n--een~~~n-~l~~~vq---nDPS~ 184 (885)
T COG5218 120 DVVR-EIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEME--------LN--EENRIVN-LLKDIVQ---NDPSD 184 (885)
T ss_pred Hhcc-hHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc--------CC--hHHHHHH-HHHHHHh---cCcHH
Confidence 6433 2222333455555555566888899999887776664321 11 1122334 4555542 45788
Q ss_pred HHHHHHHHHH
Q 003195 266 SISKASIGVV 275 (840)
Q Consensus 266 evr~~al~~L 275 (840)
|||..++..+
T Consensus 185 EVRr~allni 194 (885)
T COG5218 185 EVRRLALLNI 194 (885)
T ss_pred HHHHHHHHHe
Confidence 9999876543
No 114
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=1.7 Score=51.22 Aligned_cols=90 Identities=16% Similarity=0.194 Sum_probs=60.9
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHH
Q 003195 118 IPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHL 197 (840)
Q Consensus 118 vP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L 197 (840)
+=.+-..++..++..|+...-+++-+..- .+-.--+...|.+.++.++.+.|-+|..+|..++.+.....++.|+
T Consensus 66 ff~~tKlfQskd~~LRr~vYl~Ikels~i-----sedviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~ 140 (865)
T KOG1078|consen 66 FFAITKLFQSKDVSLRRMVYLAIKELSKI-----SEDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYM 140 (865)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHhhcccc-----chhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHH
Confidence 33333446788888899888888777542 2223334455666688889999999999999998876545566665
Q ss_pred HHHHHHHHHHhccccHHHHHHH
Q 003195 198 RRIWTAAFRAMDDIKETVRTAG 219 (840)
Q Consensus 198 ~~l~~~l~~~ldD~~~~VR~aA 219 (840)
.+- .-|..+.|+.+|
T Consensus 141 kqa-------ivd~~~avSsaa 155 (865)
T KOG1078|consen 141 KQA-------IVDKNPAVSSAA 155 (865)
T ss_pred HhH-------eeccccccchHH
Confidence 543 457777777765
No 115
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.075 Score=62.61 Aligned_cols=179 Identities=14% Similarity=0.169 Sum_probs=112.0
Q ss_pred CchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHH
Q 003195 262 SKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWD 341 (840)
Q Consensus 262 s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~e 341 (840)
++..++|.+++..+..+++.-.+.-.-....++..+++.+.+.++ |.+.++- .
T Consensus 738 d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdeds----yvyLnaI-----------------------~ 790 (982)
T KOG4653|consen 738 DDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDS----YVYLNAI-----------------------R 790 (982)
T ss_pred CCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCc----eeeHHHH-----------------------H
Confidence 344578888888888888843322122233567777777776544 2222211 1
Q ss_pred HHHHHHhhcChhhHhhHHHHHHHHH---hcc--CCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHH
Q 003195 342 TLDLCINVVDTESLDQLVPHLARLV---RSG--IGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAA 416 (840)
Q Consensus 342 al~~~~~~~d~~~l~~lvp~L~~~l---k~~--~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~V 416 (840)
++..+++.-+++ ++|.+.+-- ++. .+..-|+| .++..++.+.|.-+..|.+.++..++.++ .|+...-
T Consensus 791 gv~~Lcevy~e~----il~dL~e~Y~s~k~k~~~d~~lkVG--Eai~k~~qa~Gel~~~y~~~Li~tfl~gv-repd~~~ 863 (982)
T KOG4653|consen 791 GVVSLCEVYPED----ILPDLSEEYLSEKKKLQTDYRLKVG--EAILKVAQALGELVFKYKAVLINTFLSGV-REPDHEF 863 (982)
T ss_pred HHHHHHHhcchh----hHHHHHHHHHhcccCCCccceehHH--HHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCchHHH
Confidence 223344444433 445544422 111 23444555 88999999999999999999999999999 6777778
Q ss_pred HHHHHHHHHHhhhcCC---HHHHHHHHHHHHHhhcCC--hhhhHHHHHHHHHHHhhchhhhhh
Q 003195 417 KRAFASACASVLKYAT---PSQAQKLIEETAALHIDD--KNSQISCAILLKSYSSVASDVLSG 474 (840)
Q Consensus 417 r~~a~~Alg~l~~~~~---~~~~~~li~~l~~~~~~d--~~~r~~~~~~i~ai~~~~~~~f~~ 474 (840)
|-++..++|.++.... .+.+-.....+......| .-.|++|++++..+-...|...-|
T Consensus 864 RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLp 926 (982)
T KOG4653|consen 864 RASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLP 926 (982)
T ss_pred HHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHH
Confidence 9999999999987543 223333333333333322 457999999998887666544333
No 116
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=1.7 Score=50.65 Aligned_cols=264 Identities=13% Similarity=0.111 Sum_probs=152.7
Q ss_pred cHHHHHHHHHhhcC-hhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhc--cCccccHHHHHHHHHHhHhhcCcH
Q 003195 338 PMWDTLDLCINVVD-TESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIG--MDIKPYTSMLLRLLFPVVKEEKSA 414 (840)
Q Consensus 338 ~l~eal~~~~~~~d-~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~--~~~~p~~~~lL~~Ll~~l~~d~~~ 414 (840)
-+.|||.-.+..-. .+.+..-+..|.+.+.+. +.+.|--+++-+..|++.-. +.++.| ...++..+..+|+.
T Consensus 309 VLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~~s~davK~h----~d~Ii~sLkterDv 383 (938)
T KOG1077|consen 309 VLFEAISLAIHLDSEPELLSRAVNQLGQFLSHR-ETNIRYLALESMCKLASSEFSIDAVKKH----QDTIINSLKTERDV 383 (938)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcc-cccchhhhHHHHHHHHhccchHHHHHHH----HHHHHHHhccccch
Confidence 45677665544422 234566666666666554 56677777777777766511 122233 45556666558999
Q ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchH
Q 003195 415 AAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKY 493 (840)
Q Consensus 415 ~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~ 493 (840)
+||+.+..-+-.++...+ ...++..+.+-+. .|+..|...+.=+.-++......+..|.+.++.++-++..-.++
T Consensus 384 SirrravDLLY~mcD~~N---ak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsd- 459 (938)
T KOG1077|consen 384 SIRRRAVDLLYAMCDVSN---AKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSD- 459 (938)
T ss_pred HHHHHHHHHHHHHhchhh---HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccH-
Confidence 999998877766654443 4444555544432 46666665444444444443445888999899888665422222
Q ss_pred HHHHHHHHHHHhcCC--ChhhHHhhHH-HHHHHHHhhhcCC--CHHHHHHHHHHHHHHHHHhCc--chhhhHHHHHHHHH
Q 003195 494 VSDLFEELWEENTSG--DRVTLQLYLG-EIVSLICEGIASS--SWSSKRKSAKAICKLGEILGE--SLSNYHHVLLESIM 566 (840)
Q Consensus 494 vr~~~~~i~~~~~~~--~~~~i~~yl~-~Il~~l~~~L~d~--s~~vR~~Aa~~L~~La~~~~~--~l~~~l~~llp~L~ 566 (840)
++|--++.- -...++.|.- .+++. |..+ +..+=..+++.||....-+.+ ..+ -...+..|.
T Consensus 460 ------eVW~RvvQiVvNnedlq~yaak~~fe~----Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss--~~~qFsllh 527 (938)
T KOG1077|consen 460 ------EVWYRVVQIVVNNEDLQGYAAKRLFEY----LQKPACHENMVKVGGYILGEFGNLIADDPRSS--PAVQFSLLH 527 (938)
T ss_pred ------HHHHHhheeEecchhhhHHHHHHHHHH----HhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCC--hHHHHHHHH
Confidence 445443321 1245667753 33333 3322 234445566777766554332 222 255677788
Q ss_pred HhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 003195 567 KEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLE 630 (840)
Q Consensus 567 ~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~ 630 (840)
+-+..-+...|.-+|..+..++.-.++ .-..+.+++.....--+.++++.|+.-|.
T Consensus 528 ~K~~~~s~~tr~lLLtTyiKl~nl~PE--------i~~~v~~vFq~~~n~~D~ElQqRa~EYLq 583 (938)
T KOG1077|consen 528 EKLHLCSPVTRALLLTTYIKLINLFPE--------IKSNVQKVFQLYSNLIDVELQQRAVEYLQ 583 (938)
T ss_pred HHhccCChhHHHHHHHHHHHHHhhChh--------hhHHHHHHHHhhcccCCHHHHHHHHHHHH
Confidence 888777777899999999998864421 22445555544433346777777765543
No 117
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.75 E-value=2.1 Score=51.35 Aligned_cols=281 Identities=16% Similarity=0.095 Sum_probs=150.9
Q ss_pred HHhhHHHHHHHHHhhhcCC-CHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHHHHHh
Q 003195 513 LQLYLGEIVSLICEGIASS-SWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVP-GRLWEGKDALLYAIGSISTS 590 (840)
Q Consensus 513 i~~yl~~Il~~l~~~L~d~-s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~-~r~~~~Ke~vl~aL~~l~~~ 590 (840)
...++..++..+...+... .+..--.+.-+++..++... ...+.+..++.....++. +.....|-.++.++...+
T Consensus 443 ~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~-~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~-- 519 (1005)
T KOG2274|consen 443 NDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTV-INPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC-- 519 (1005)
T ss_pred hHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--
Confidence 4456666776666666543 34433366777775555432 123345666666667664 455778877777777665
Q ss_pred cccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCc--chHHhHHHHHHhhcccccccCCCCCCCCC
Q 003195 591 CHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP--KFFNIIFPLLFEMCGSTALNKSGQVPLPS 668 (840)
Q Consensus 591 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~--~l~~~v~~i~~~l~~~~~~~~~~~~~~~~ 668 (840)
+..... ++.|.|+..+.....+.+..+-..-+.+|...++.=|.. .....+.|..-.+--+...
T Consensus 520 -~~~vl~---~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~---------- 585 (1005)
T KOG2274|consen 520 -KVKVLL---SLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSE---------- 585 (1005)
T ss_pred -Cceecc---ccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcC----------
Confidence 433333 778999999998887777777666667777766654432 2333444444333222111
Q ss_pred CccchhhhccccCCchhHHHhhhhhhHHhhchhhHHHhh-hhhHHHHHhhcCCCCChH---HHHH----HHHhhhcCCCC
Q 003195 669 DASKEESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQE-KNLVQLFTISLSPGFPWT---ELCS----RLQKTLDDSAG 740 (840)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~---~~~~----~~~~~l~~~~~ 740 (840)
| ......+.+|+...+ +..+-+.++ ..++|.+++-+ ....|. .+|. ++..+||...+
T Consensus 586 D-----------P~V~~~~qd~f~el~---q~~~~~g~m~e~~iPslisil-~~~~~~~~~~l~~~aidvLttvvr~tp~ 650 (1005)
T KOG2274|consen 586 D-----------PQVASLAQDLFEELL---QIAANYGPMQERLIPSLISVL-QLNADKAPAGLCAIAIDVLTTVLRNTPS 650 (1005)
T ss_pred C-----------chHHHHHHHHHHHHH---HHHHhhcchHHHHHHHHHHHH-cCcccccCchhhHHHHHHHHHHHhcCCC
Confidence 0 011224455554442 333334443 47888887765 344455 5555 55556663222
Q ss_pred CCCccchhHHHHHHHhhhhhhhhhhcccchhhhhhHhhhHHHHHHHHH----------------------hhh--ccccc
Q 003195 741 TSPHAGISSLIQELFHTVSPKVVECISTVKIAQVHISASECLLEICKL----------------------FRQ--ISSVY 796 (840)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~vr~~a~~~l~~i~~~----------------------~~~--~~~~~ 796 (840)
+ - -..++....|-+..|.-.+.+.+.=-.|=+|+.-++.. ..+ +|=+.
T Consensus 651 p-L-------~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~s 722 (1005)
T KOG2274|consen 651 P-L-------PNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETS 722 (1005)
T ss_pred C-c-------cHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccc
Confidence 2 1 12222222233323332333344334444444443322 011 35555
Q ss_pred ccccchhhhhHH----HHHhhhhHhHHHHHHHHHHHhcccc
Q 003195 797 SSNIGIKGELVH----QCEMEKNMEAKSLLKKCIDILENLE 833 (840)
Q Consensus 797 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (840)
+.-..|++-++. ..=+|--+.--.+|+.|+--+++.+
T Consensus 723 ds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae 763 (1005)
T KOG2274|consen 723 DSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAE 763 (1005)
T ss_pred hhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhh
Confidence 555556665544 4455666666678999988877665
No 118
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=96.75 E-value=4.2 Score=54.89 Aligned_cols=126 Identities=17% Similarity=0.209 Sum_probs=93.5
Q ss_pred cCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCC-chhHHHHHHHH
Q 003195 506 TSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRL-WEGKDALLYAI 584 (840)
Q Consensus 506 ~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~-~~~Ke~vl~aL 584 (840)
+.+...-+.+|+..++..+..-+.+++..+-.++..+++.||...|+....+.+.+++.+.+.+.+.. -.-+...+.++
T Consensus 635 i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l 714 (2341)
T KOG0891|consen 635 IISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKAL 714 (2341)
T ss_pred HHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHh
Confidence 33344567899999998888889999989999999999999999997776677788888888887654 33467888999
Q ss_pred HHHHHhcccccccCCCCchHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHH
Q 003195 585 GSISTSCHKDISAEDPTTPFAIVDMVSSACRK-KIKKYREAAFSCLEQVI 633 (840)
Q Consensus 585 ~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~R~~Al~~L~~l~ 633 (840)
+.+.+..+-.... ....|.++..+....+. .....|.+++..+|...
T Consensus 715 ~~l~s~~~~~v~p--~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g 762 (2341)
T KOG0891|consen 715 GQLESSTGYVVDP--YLDYPELLDILINILKTEQSSTIRREAIRLLGLLG 762 (2341)
T ss_pred hhhhcccceEecc--cccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
Confidence 9888766542221 11246666766665544 35689999999998443
No 119
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.69 E-value=0.3 Score=53.84 Aligned_cols=214 Identities=20% Similarity=0.193 Sum_probs=135.7
Q ss_pred HHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHH
Q 003195 358 LVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQ 437 (840)
Q Consensus 358 lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~ 437 (840)
-++.+.+.+.+. +..+|..+...++.+ -....++.+...+ .|.++.||..++.++|.+- .+..+.
T Consensus 44 ~~~~~~~~l~~~-~~~vr~~aa~~l~~~----------~~~~av~~l~~~l-~d~~~~vr~~a~~aLg~~~---~~~a~~ 108 (335)
T COG1413 44 AADELLKLLEDE-DLLVRLSAAVALGEL----------GSEEAVPLLRELL-SDEDPRVRDAAADALGELG---DPEAVP 108 (335)
T ss_pred hHHHHHHHHcCC-CHHHHHHHHHHHhhh----------chHHHHHHHHHHh-cCCCHHHHHHHHHHHHccC---ChhHHH
Confidence 456666777665 667788777775433 2345677778887 7889999999999888763 333333
Q ss_pred HHHHHHHHhhcCChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCch------------HHHHHHHHHHHHh
Q 003195 438 KLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDK------------YVSDLFEELWEEN 505 (840)
Q Consensus 438 ~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~------------~vr~~~~~i~~~~ 505 (840)
.+++.+.. .++..+|..++.+++.+..... +.|++ ....++.. .+|.........
T Consensus 109 ~li~~l~~--d~~~~vR~~aa~aL~~~~~~~a---------~~~l~-~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~- 175 (335)
T COG1413 109 PLVELLEN--DENEGVRAAAARALGKLGDERA---------LDPLL-EALQDEDSGSAAAALDAALLDVRAAAAEALGE- 175 (335)
T ss_pred HHHHHHHc--CCcHhHHHHHHHHHHhcCchhh---------hHHHH-HHhccchhhhhhhhccchHHHHHHHHHHHHHH-
Confidence 33333322 2456789988888888743211 23322 22333221 233332222211
Q ss_pred cCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 003195 506 TSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIG 585 (840)
Q Consensus 506 ~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~ 585 (840)
.-.+...+.+...+.+.+..+|..|+.+|+.+.... ..+.+.+.+.+.+..|.+|...+.+++
T Consensus 176 ---------~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~ 238 (335)
T COG1413 176 ---------LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAALLALG 238 (335)
T ss_pred ---------cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHHHHhc
Confidence 123445667778889999999999999999777532 457788889999999999988888876
Q ss_pred HHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 003195 586 SISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLE 630 (840)
Q Consensus 586 ~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~ 630 (840)
.+- .+.....+.....+.+...+..+...++
T Consensus 239 ~~~--------------~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 239 EIG--------------DEEAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred ccC--------------cchhHHHHHHHHhccchHHHHHHHHHhc
Confidence 542 1344455566666666666666666665
No 120
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.68 E-value=0.011 Score=58.02 Aligned_cols=92 Identities=13% Similarity=0.082 Sum_probs=78.5
Q ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHH-hCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHH---Hhcc
Q 003195 517 LGEIVSLICEGIASSSWSSKRKSAKAICKLGEI-LGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSIS---TSCH 592 (840)
Q Consensus 517 l~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~-~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~---~~~~ 592 (840)
....++++.+.+......-|--|.+++.+|... .++.+.|.++++++.|.++|..|+.++.+.+|.+|..++ ...+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 345778888899888888999999999999999 667899999999999999999999999999999999994 4444
Q ss_pred cccccCCCCchHHHHHHHHH
Q 003195 593 KDISAEDPTTPFAIVDMVSS 612 (840)
Q Consensus 593 ~~~~~~~~~~~~~i~~~l~~ 612 (840)
+.+. ||..++++.+.-
T Consensus 116 ~aLv----PyyrqLLp~ln~ 131 (183)
T PF10274_consen 116 EALV----PYYRQLLPVLNL 131 (183)
T ss_pred HHHH----HHHHHHHHHHHH
Confidence 4443 788999998773
No 121
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.63 E-value=0.28 Score=55.36 Aligned_cols=117 Identities=11% Similarity=-0.051 Sum_probs=74.8
Q ss_pred HHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhchhhhhhhHhhH
Q 003195 401 LRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVI 479 (840)
Q Consensus 401 L~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~l 479 (840)
+..++..+ .|.++.||..++.|+|.+- .+ ...+.+...+. +|+.+|..+..+++... .+ + .+.+
T Consensus 88 ~~~L~~~L-~d~~~~vr~aaa~ALg~i~---~~----~a~~~L~~~L~~~~p~vR~aal~al~~r~---~~---~-~~~L 152 (410)
T TIGR02270 88 LRSVLAVL-QAGPEGLCAGIQAALGWLG---GR----QAEPWLEPLLAASEPPGRAIGLAALGAHR---HD---P-GPAL 152 (410)
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHhcCC---ch----HHHHHHHHHhcCCChHHHHHHHHHHHhhc---cC---h-HHHH
Confidence 77777888 7888899999999998653 22 22334444443 45667766655444421 11 1 1223
Q ss_pred hHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 003195 480 VPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKL 546 (840)
Q Consensus 480 lP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~L 546 (840)
++ ...|+++.||.....+...+... +.++.+...+.|++..||+.|+.+++.+
T Consensus 153 ~~----~L~d~d~~Vra~A~raLG~l~~~----------~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 153 EA----ALTHEDALVRAAALRALGELPRR----------LSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HH----HhcCCCHHHHHHHHHHHHhhccc----------cchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 33 34588999998777766554332 1233455668999999999999888655
No 122
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.58 E-value=0.95 Score=49.26 Aligned_cols=206 Identities=17% Similarity=0.125 Sum_probs=126.7
Q ss_pred CchHhHHHHHHHHHHHHh--ccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCC-----HHHHHHHHHHHH
Q 003195 372 LNTRVGVASFISLLVQKI--GMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT-----PSQAQKLIEETA 444 (840)
Q Consensus 372 ~~~r~~a~~~l~~L~~~~--~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~-----~~~~~~li~~l~ 444 (840)
..+|.+++..+..+..+. +..+..+...++..+...+... ...=+..++.+++-++-..+ .+.+..+.+.|.
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~ 135 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDSEEIFEELKPVLK 135 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHH
Confidence 456888888877765432 2344556678888888888432 23334556677777765533 334456666666
Q ss_pred HhhcC---ChhhhHHHHHHHHHHHhhchhhhhhhHh--hHhHHHHHh---hcC---------CchHHHHHHHHHHHHhcC
Q 003195 445 ALHID---DKNSQISCAILLKSYSSVASDVLSGYHA--VIVPVIFIS---RFE---------DDKYVSDLFEELWEENTS 507 (840)
Q Consensus 445 ~~~~~---d~~~r~~~~~~i~ai~~~~~~~f~~~~~--~llP~l~~~---~~d---------~d~~vr~~~~~i~~~~~~ 507 (840)
..+.+ ....|..++.+++-++...+........ ..+-.+|.. ..+ +++.+.......|.-+..
T Consensus 136 ~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt 215 (309)
T PF05004_consen 136 RILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLT 215 (309)
T ss_pred HHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHh
Confidence 65542 2356777777777766654433333221 122222221 111 234577777788977665
Q ss_pred CChh-hHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 003195 508 GDRV-TLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGS 586 (840)
Q Consensus 508 ~~~~-~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~ 586 (840)
..+. .+..++...++.+...|.+.+.+||.+|..+|+-|.+...+.=.. -.++..+.+++.+..
T Consensus 216 ~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~---------------~~~~~~~~l~~~l~~ 280 (309)
T PF05004_consen 216 TLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEED---------------FLYEDMEELLEQLRE 280 (309)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhccccc---------------ccccCHHHHHHHHHH
Confidence 4432 466777888999999999999999999999999888765421100 113356667777777
Q ss_pred HHHhccc
Q 003195 587 ISTSCHK 593 (840)
Q Consensus 587 l~~~~~~ 593 (840)
|+...++
T Consensus 281 La~dS~K 287 (309)
T PF05004_consen 281 LATDSSK 287 (309)
T ss_pred HHHhccC
Confidence 7765543
No 123
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.48 E-value=4.3 Score=51.69 Aligned_cols=331 Identities=13% Similarity=0.050 Sum_probs=171.3
Q ss_pred CCchhHHHHHHHHHHHHHHHhhccccccchH----HHHHHHHHhccCchhH----hHHHHHHhhhhcccchhhhHHHHHh
Q 003195 261 LSKVDSISKASIGVVMKLVKGAGIAIRPHLS----DLVSCMLESLSSLEDQ----GLNYIELHAANAGIQTEKLENLRIS 332 (840)
Q Consensus 261 ~s~~~evr~~al~~L~~la~~~g~~l~p~lp----~Lv~~Ll~~ls~~ep~----~~~~l~~~a~~~~~~~~~~d~~R~~ 332 (840)
.+++.+||.+..-++.+|.+.+.+. .||-. ++...++..++.+..+ ..+|..
T Consensus 60 ~h~d~dvrllvacCvseilRi~aPe-aPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~------------------- 119 (1266)
T KOG1525|consen 60 KHKDKDVRLLVACCVSEILRIYAPE-APYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFY------------------- 119 (1266)
T ss_pred cCCCcChhHHHHHHHHHHHHHhCCC-CCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHH-------------------
Confidence 4577899999999999999887654 35543 4444444444332211 111110
Q ss_pred hccCCcHHHHHHH--HHhhcChhhHhhHHHHHHHHHhccC--CCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhH
Q 003195 333 IAKGSPMWDTLDL--CINVVDTESLDQLVPHLARLVRSGI--GLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVV 408 (840)
Q Consensus 333 ~~~~s~l~eal~~--~~~~~d~~~l~~lvp~L~~~lk~~~--~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l 408 (840)
+.+.+.. .+-.++.+.++++++.+..++-+-+ +-+.++.- +.+++...=..+..-...+|..++..|
T Consensus 120 ------lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~---~~~i~~~li~e~d~v~~e~L~~ll~~l 190 (1266)
T KOG1525|consen 120 ------LLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFN---MLDIAIMLITEEDTVQSELLDVLLENL 190 (1266)
T ss_pred ------HHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHH---HHHHHHHHHHhhccchHHHHHHHHHHh
Confidence 1122221 1222334445666666665553321 22333322 333333333333344556677776666
Q ss_pred hhcCcHHHHHHHHHHHHHhhhcCCHHH---HHHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHH
Q 003195 409 KEEKSAAAKRAFASACASVLKYATPSQ---AQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIF 484 (840)
Q Consensus 409 ~~d~~~~Vr~~a~~Alg~l~~~~~~~~---~~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~ 484 (840)
.+. +......+-.-...++..+++.. +..++...+..+. .-...+...-.++..+.+.+++. +..++|.+.
T Consensus 191 v~~-~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~l----l~~vip~l~ 265 (1266)
T KOG1525|consen 191 VKP-GRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQL----LLAVIPQLE 265 (1266)
T ss_pred ccC-CCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHH----HHHHHHHHH
Confidence 322 22233333222223333333221 2222222222221 11233444556666666666643 334778776
Q ss_pred HhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHH
Q 003195 485 ISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLES 564 (840)
Q Consensus 485 ~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~ 564 (840)
.-...+++++|--..++...+...-...+..-.+.+...++..+.|.+.+||..+.++..++-...++.. ......
T Consensus 266 ~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~----~~~~~~ 341 (1266)
T KOG1525|consen 266 FELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIA----KASTIL 341 (1266)
T ss_pred HHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhh----hHHHHH
Confidence 6666677778876666665554432222223356678888888999999999999998888776643322 122222
Q ss_pred HHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 003195 565 IMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKA 635 (840)
Q Consensus 565 L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~ 635 (840)
+.-+..+-.++.|......++... ...++- .+.+.+++.+...++|+.+++|..|+.-|.++.+.
T Consensus 342 ~~l~~~~~D~~~rir~~v~i~~~~---v~~~~l---~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 342 LALRERDLDEDVRVRTQVVIVACD---VMKFKL---VYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHhhcCChhhhheeeEEEEEee---hhHhhh---hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 222222222333322221111110 001111 34455888888889999999999999999999983
No 124
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.43 E-value=0.87 Score=52.79 Aligned_cols=120 Identities=14% Similarity=0.126 Sum_probs=75.3
Q ss_pred CchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc-CC
Q 003195 372 LNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DD 450 (840)
Q Consensus 372 ~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~-~d 450 (840)
..+|.-|+++|..+. ..|-...+.-+.+++... .|.+..||+.++.++..+++.. ++.+.++.+-|.+++. +|
T Consensus 36 ~k~K~Laaq~I~kff----k~FP~l~~~Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~-~~~v~kvaDvL~QlL~tdd 109 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFF----KHFPDLQEEAINAQLDLC-EDEDVQIRKQAIKGLPQLCKDN-PEHVSKVADVLVQLLQTDD 109 (556)
T ss_dssp HHHHHHHHHHHHHHH----CC-GGGHHHHHHHHHHHH-T-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHH----hhChhhHHHHHHHHHHHH-hcccHHHHHHHHHhHHHHHHhH-HHHHhHHHHHHHHHHhccc
Confidence 345667777776554 455567889999999998 7899999999999999998753 5668888888888886 45
Q ss_pred hhhhHHHHHHHHHHHhhchh-hhhhhHhhHhHHHHHhhcCCchHHHHHHHHHH
Q 003195 451 KNSQISCAILLKSYSSVASD-VLSGYHAVIVPVIFISRFEDDKYVSDLFEELW 502 (840)
Q Consensus 451 ~~~r~~~~~~i~ai~~~~~~-~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~ 502 (840)
+....++-.++.++.+.-+. .+...++++.+. ...++.+|+-+.+..
T Consensus 110 ~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-----~~~de~~Re~~lkFl 157 (556)
T PF05918_consen 110 PVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-----KSGDEQVRERALKFL 157 (556)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--------HS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----ccCchHHHHHHHHHH
Confidence 56667777777777665443 234444444421 124556776555444
No 125
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=2.5 Score=49.95 Aligned_cols=290 Identities=14% Similarity=0.128 Sum_probs=148.5
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHH
Q 003195 198 RRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMK 277 (840)
Q Consensus 198 ~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~ 277 (840)
..+++.+-+++....++|--.|+++.-.+.....|.+. +.+..+=+| +.++..-+|-.|..+|.+
T Consensus 244 s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~----------pavs~Lq~f-----lssp~~~lRfaAvRtLnk 308 (865)
T KOG1078|consen 244 SPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA----------PAVSVLQLF-----LSSPKVALRFAAVRTLNK 308 (865)
T ss_pred hhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc----------hHHHHHHHH-----hcCcHHHHHHHHHHHHHH
Confidence 34455555566677788876666666666544444332 233332232 345667889999999999
Q ss_pred HHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhh
Q 003195 278 LVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQ 357 (840)
Q Consensus 278 la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~ 357 (840)
+|...+....-.-.++ -.++++. .| +--+-|+..+++.-.++..+.
T Consensus 309 vAm~~P~~v~~cN~el----E~lItd~------------------------Nr------sIat~AITtLLKTG~e~sv~r 354 (865)
T KOG1078|consen 309 VAMKHPQAVTVCNLDL----ESLITDS------------------------NR------SIATLAITTLLKTGTESSVDR 354 (865)
T ss_pred HHHhCCccccccchhH----Hhhhccc------------------------cc------chhHHHHHHHHHhcchhHHHH
Confidence 9876443321111111 0011110 00 000123444444444444444
Q ss_pred HHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHH
Q 003195 358 LVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQ 437 (840)
Q Consensus 358 lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~ 437 (840)
++..+...+.+ +..+-|+-+.+.+..|+..++.. +..++.-|...|.++....-.++...++-.+++..++..-
T Consensus 355 Lm~qI~~fv~d-isDeFKivvvdai~sLc~~fp~k----~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe- 428 (865)
T KOG1078|consen 355 LMKQISSFVSD-ISDEFKIVVVDAIRSLCLKFPRK----HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE- 428 (865)
T ss_pred HHHHHHHHHHh-ccccceEEeHHHHHHHHhhccHH----HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-
Confidence 44443333322 24445666666666666655422 2233344444444444556667777777777765554321
Q ss_pred HHHHHHHHhhcCChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhH
Q 003195 438 KLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYL 517 (840)
Q Consensus 438 ~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl 517 (840)
.-+.++.+.. +|-..+..+...++-+.+-.|..- -=...+-+++.-.+-++..||......+..+..+.. .-.
T Consensus 429 ~~L~~LCefI-EDce~~~i~~rILhlLG~EgP~a~--~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~----~l~ 501 (865)
T KOG1078|consen 429 RGLEHLCEFI-EDCEFTQIAVRILHLLGKEGPKAP--NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDV----VLL 501 (865)
T ss_pred HHHHHHHHHH-HhccchHHHHHHHHHHhccCCCCC--CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC----Ccc
Confidence 1122222221 344445555555555544332111 111122233333333556677766666555543221 124
Q ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHH
Q 003195 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEI 549 (840)
Q Consensus 518 ~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~ 549 (840)
+.|..++.+++.|.+-.+|..|...+..+-..
T Consensus 502 ~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 502 PSILVLLKRCLNDSDDEVRDRATFYLKNLEEK 533 (865)
T ss_pred ccHHHHHHHHhcCchHHHHHHHHHHHHHhhhh
Confidence 56778888999999999999999999888744
No 126
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.37 E-value=0.16 Score=61.89 Aligned_cols=159 Identities=16% Similarity=0.088 Sum_probs=101.6
Q ss_pred hhhhHHHHHHhhc----CCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHcc
Q 003195 113 HLRLLIPKLVRFQ----YDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSG-SRLWRSREASCLSLADIIQG 187 (840)
Q Consensus 113 ~l~~lvP~L~~~~----~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~-~~~wrvR~aac~Al~~Ll~~ 187 (840)
.|.++.|.+.-.+ .-.+|..|.|+.-+..-++.=+....+.| +|.++..|. ++++++|..+..|++|+.-.
T Consensus 916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~----l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESH----LPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHH----HHHHHHHHhcCCCceeeecchheccchhhh
Confidence 4567777776656 34469999998777777764333444444 455666775 88999999999999998643
Q ss_pred CCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHH
Q 003195 188 RKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSI 267 (840)
Q Consensus 188 ~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~ev 267 (840)
.+ .-+++ .=+.+++-+.|...+||+.|...+..|.-. ..+. +.--++-+. ..+.++++++
T Consensus 992 fp-nlie~----~T~~Ly~rL~D~~~~vRkta~lvlshLILn--dmiK------------VKGql~eMA-~cl~D~~~~I 1051 (1251)
T KOG0414|consen 992 FP-NLIEP----WTEHLYRRLRDESPSVRKTALLVLSHLILN--DMIK------------VKGQLSEMA-LCLEDPNAEI 1051 (1251)
T ss_pred cc-cccch----hhHHHHHHhcCccHHHHHHHHHHHHHHHHh--hhhH------------hcccHHHHH-HHhcCCcHHH
Confidence 21 11222 223467778999999999997777665210 0000 111233332 3577788999
Q ss_pred HHHHHHHHHHHHHhhccccccchHHHHHH
Q 003195 268 SKASIGVVMKLVKGAGIAIRPHLSDLVSC 296 (840)
Q Consensus 268 r~~al~~L~~la~~~g~~l~p~lp~Lv~~ 296 (840)
+..|=..+.+++++. ..+-.-+|+++..
T Consensus 1052 sdlAk~FF~Els~k~-n~iynlLPdil~~ 1079 (1251)
T KOG0414|consen 1052 SDLAKSFFKELSSKG-NTIYNLLPDILSR 1079 (1251)
T ss_pred HHHHHHHHHHhhhcc-cchhhhchHHHHh
Confidence 998888888888766 4444444444433
No 127
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=96.28 E-value=0.3 Score=54.39 Aligned_cols=124 Identities=15% Similarity=0.219 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHh---cCCCCchhHHHHHHHHHHHHHhcccc---ccc--CCCCch
Q 003195 532 SWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKE---VPGRLWEGKDALLYAIGSISTSCHKD---ISA--EDPTTP 603 (840)
Q Consensus 532 s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~---l~~r~~~~Ke~vl~aL~~l~~~~~~~---~~~--~~~~~~ 603 (840)
....|++|...+..|++.++..+.+.+...+..+.+. -....|.-|+.++.-+++++...... ... ...+..
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred cCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 3456777779999999988776554433333333332 23457999999999999998765321 110 011111
Q ss_pred HHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHcCCcchHHhHHHHHHhhccc
Q 003195 604 FAIVDMVSSACR---KKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGS 655 (840)
Q Consensus 604 ~~i~~~l~~~~~---~~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~~l~~~ 655 (840)
+=....+..++. .+.+-.|..|++.+..+-..++.+.+..+++.++..+.+.
T Consensus 304 ~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~ 358 (370)
T PF08506_consen 304 DFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSS 358 (370)
T ss_dssp HHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCC
Confidence 111222333444 4567899999999999999998878888888888888655
No 128
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.14 E-value=4.7 Score=48.64 Aligned_cols=166 Identities=9% Similarity=0.034 Sum_probs=88.5
Q ss_pred HHHHHHHhhchh---hhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHH--HHHHHHHhhhcCC--
Q 003195 459 ILLKSYSSVASD---VLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLG--EIVSLICEGIASS-- 531 (840)
Q Consensus 459 ~~i~ai~~~~~~---~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~--~Il~~l~~~L~d~-- 531 (840)
.++..++.+-|. .|.+|...++- .....++++..--+.+++..+.... -....++. .++|.+.+.|...
T Consensus 472 KlIRNiS~h~~~~k~~f~~~i~~L~~---~v~~~~~ee~~vE~LGiLaNL~~~~-ld~~~ll~~~~llp~L~~~L~~g~~ 547 (708)
T PF05804_consen 472 KLIRNISQHDGPLKELFVDFIGDLAK---IVSSGDSEEFVVECLGILANLTIPD-LDWAQLLQEYNLLPWLKDLLKPGAS 547 (708)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHH---HhhcCCcHHHHHHHHHHHHhcccCC-cCHHHHHHhCCHHHHHHHHhCCCCC
Confidence 455666655432 23333332222 2233334444433445544433211 12233332 4677777777543
Q ss_pred CHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHHHHHhcCCCCch--hHHHHHHHHHHHHHhc--ccccccCCCCchHH
Q 003195 532 SWSSKRKSAKAICKLGEILGESLSNYH--HVLLESIMKEVPGRLWE--GKDALLYAIGSISTSC--HKDISAEDPTTPFA 605 (840)
Q Consensus 532 s~~vR~~Aa~~L~~La~~~~~~l~~~l--~~llp~L~~~l~~r~~~--~Ke~vl~aL~~l~~~~--~~~~~~~~~~~~~~ 605 (840)
..++--.+...+|.++.. +...+.+ ..+++.|++-++.+..+ ---.++.+|..++..- .+.+.. -.+
T Consensus 548 ~dDl~LE~Vi~~gtla~d--~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~-----~~~ 620 (708)
T PF05804_consen 548 EDDLLLEVVILLGTLASD--PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLK-----ETE 620 (708)
T ss_pred ChHHHHHHHHHHHHHHCC--HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHh-----ccc
Confidence 346777788888888742 2222222 35667777777655432 2233344444444321 111111 134
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 003195 606 IVDMVSSACRKKIKKYREAAFSCLEQVIKA 635 (840)
Q Consensus 606 i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~ 635 (840)
+...++..+.++|..+|+.|=.||.-++..
T Consensus 621 ~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 621 IPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 667888999999999999999999888764
No 129
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.11 E-value=0.15 Score=49.97 Aligned_cols=142 Identities=15% Similarity=0.095 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHHHH
Q 003195 154 HLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIK-ETVRTAGDKLCRSVTSLTIR 232 (840)
Q Consensus 154 ~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~-~~VR~aA~~~~~~l~~~~ir 232 (840)
.++.....+.+.+.+++++.|-.++..+.-+++..+++.+..+....+..++..++... ..+++++..++..+ +.+
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l---~~~ 98 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRL---FDL 98 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---HHH
Confidence 45566666788889999999999888888888887788887888888888888887533 45666664444444 322
Q ss_pred hhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhc
Q 003195 233 LCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESL 301 (840)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~l 301 (840)
.-.-.....+...+.++.+++.+++ +.++ ......++++|..+....+..++||..++-..++..+
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i~~ll~--l~~~-~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFIQSLLQ--LLQD-SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred hcCCCchHHHHhhccHHHHHHHHHH--HHhc-cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 2111111122334455666666653 3332 4667789999999999999999999988877776544
No 130
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=5.2 Score=48.57 Aligned_cols=81 Identities=9% Similarity=-0.075 Sum_probs=67.6
Q ss_pred hHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHH---HHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcc
Q 003195 516 YLGEIVSLICEGIASSSWSSKRKSAKAICKLG---EILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCH 592 (840)
Q Consensus 516 yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La---~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~ 592 (840)
.+..|+......|++.+-.+|-.+..++.... ..+.+.+.|...+.||.++..+..+.+-.-+.++..+-.++..++
T Consensus 800 iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 800 IVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhh
Confidence 35667777888899999999999998877544 445677888999999999999999988888888999999999888
Q ss_pred cccc
Q 003195 593 KDIS 596 (840)
Q Consensus 593 ~~~~ 596 (840)
+.+.
T Consensus 880 DFv~ 883 (1014)
T KOG4524|consen 880 DFVA 883 (1014)
T ss_pred hHHH
Confidence 7664
No 131
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=4.6 Score=47.86 Aligned_cols=360 Identities=15% Similarity=0.126 Sum_probs=171.7
Q ss_pred hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHccC--Cch
Q 003195 115 RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSR-LWRSREASCLSLADIIQGR--KFD 191 (840)
Q Consensus 115 ~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~-~wrvR~aac~Al~~Ll~~~--~~~ 191 (840)
.+++|-+= --.+..-.+||-+.-+.+.-++- +.-++--+.+-...++.+.|. +--||-++..++.-.++.- ..+
T Consensus 487 ~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsv--q~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~d 563 (978)
T KOG1993|consen 487 EALLPELA-NDHGNSRIIRRRVAWILGQWVSV--QQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSED 563 (978)
T ss_pred HhhCHHhh-hcccchhHHHHHHHHHHhhhhhe--echHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChh
Confidence 36778773 11222344666665555554431 122333334444556666666 5678988888888888753 445
Q ss_pred hhhHHHHHHHHHHHHHhccccHH-HHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHH
Q 003195 192 QVGKHLRRIWTAAFRAMDDIKET-VRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKA 270 (840)
Q Consensus 192 ~l~~~L~~l~~~l~~~ldD~~~~-VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~ 270 (840)
.+.||++.+|..+|+.+.-..+. -|. ..+..++.+..|.-+ ... ..+..+ -..+|.|- ++ .+..+-+|..
T Consensus 564 sFlp~lenlf~~lfkll~~~~e~Dtk~---~VL~~ls~lI~r~~e-~I~--P~~~~i-vq~lp~LW-e~-s~~e~lLr~a 634 (978)
T KOG1993|consen 564 SFLPYLENLFVLLFKLLKAVEECDTKT---SVLNLLSTLIERVSE-HIA--PYASTI-VQYLPLLW-EE-SEEEPLLRCA 634 (978)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHH-hhh--HHHHHH-HHHHHHHH-hh-hccCcHHHHH
Confidence 79999999999999988532221 122 223444444333321 100 011222 23466554 32 2344568888
Q ss_pred HHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHH-----Hhh--hhc-ccchhhh---HHHHHhhc-cCCc
Q 003195 271 SIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIE-----LHA--ANA-GIQTEKL---ENLRISIA-KGSP 338 (840)
Q Consensus 271 al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~-----~~a--~~~-~~~~~~~---d~~R~~~~-~~s~ 338 (840)
.+.++.+++...|..=.++.|-+.|.+--...-..|+-+..+. |.. .+. ..+.+-. +-.---+- .++-
T Consensus 635 lL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~ 714 (978)
T KOG1993|consen 635 LLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTEN 714 (978)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhhh
Confidence 8999999999988765566666666654333222333322211 000 000 0000000 00000000 0000
Q ss_pred HHHHHHHHHhh--cChhhH-----hhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccc-cHHHHHHHHHHhH-h
Q 003195 339 MWDTLDLCINV--VDTESL-----DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKP-YTSMLLRLLFPVV-K 409 (840)
Q Consensus 339 l~eal~~~~~~--~d~~~l-----~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p-~~~~lL~~Ll~~l-~ 409 (840)
+--++.-+-.| +|..++ ..+...+.+.+.+- ....-++.++++..+....+ -+.+ +...+++.++.++ .
T Consensus 715 L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dv-r~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~ 792 (978)
T KOG1993|consen 715 LPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDV-RNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAE 792 (978)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHh
Confidence 00000101111 121111 11222222222211 11122345555555544332 2222 2334555555554 3
Q ss_pred hcCcHHHHHHHHHHHHHhhhcCCHH---------HHHHHHHHHHHhh---c---CChhhhHHHHHHHHHHHhhchhhhhh
Q 003195 410 EEKSAAAKRAFASACASVLKYATPS---------QAQKLIEETAALH---I---DDKNSQISCAILLKSYSSVASDVLSG 474 (840)
Q Consensus 410 ~d~~~~Vr~~a~~Alg~l~~~~~~~---------~~~~li~~l~~~~---~---~d~~~r~~~~~~i~ai~~~~~~~f~~ 474 (840)
+++.+.+-..+...++++.-..++- ..+.++..+++.| + .++..|..-+.++.++.+......-.
T Consensus 793 ~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~ila 872 (978)
T KOG1993|consen 793 NDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPDILA 872 (978)
T ss_pred CCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcHHHH
Confidence 6788888888888888776444321 1223333444444 1 35777888888888887764333334
Q ss_pred hHhhHhHHHHHhhc
Q 003195 475 YHAVIVPVIFISRF 488 (840)
Q Consensus 475 ~~~~llP~l~~~~~ 488 (840)
.++.++.+.+...+
T Consensus 873 ~~~~I~nl~~e~L~ 886 (978)
T KOG1993|consen 873 VLDSIMNLWFEVLS 886 (978)
T ss_pred HHhHHHHHHHHHHH
Confidence 44445555544433
No 132
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.03 E-value=0.56 Score=49.69 Aligned_cols=228 Identities=15% Similarity=0.108 Sum_probs=126.8
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 003195 162 LLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKH-LRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTE 240 (840)
Q Consensus 162 Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~-L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~ 240 (840)
|=..+++.++.+|..+...|+.+++..+.+.+... ..-++.-...-++| +..++.+ ...+..+.+. +.+.
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D-~~~~~~~-l~gl~~L~~~--~~~~----- 74 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD-HACVQPA-LKGLLALVKM--KNFS----- 74 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc-HhhHHHH-HHHHHHHHhC--cCCC-----
Confidence 44567899999999999999999998876655542 33333444444554 4445554 4444444321 1111
Q ss_pred cchHHhHHHhHHHHHHhc-ccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHH------
Q 003195 241 ISDARQSMDIVLPFLLAE-GILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIE------ 313 (840)
Q Consensus 241 ~~~~~~~l~~lLP~Ll~~-gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~------ 313 (840)
......++..+.++ ...+-....|....+.+..+.......+...-+..+..+++.+...+.+. |.+.
T Consensus 75 ----~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPR-nLl~~F~l~~ 149 (262)
T PF14500_consen 75 ----PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPR-NLLLSFKLLK 149 (262)
T ss_pred ----hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHH-HHHHHHHHHH
Confidence 11223333333321 23333467899999999999988777776666788888888887654432 1111
Q ss_pred HhhhhcccchhhhHHHHHhh-----------------ccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHh
Q 003195 314 LHAANAGIQTEKLENLRISI-----------------AKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRV 376 (840)
Q Consensus 314 ~~a~~~~~~~~~~d~~R~~~-----------------~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~ 376 (840)
.-...+.+ .+..++.--.. +...-+..++..|+... ...-+..+|.+++-+.+. ...+|.
T Consensus 150 ~i~~~~~~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~-~~fa~~~~p~LleKL~s~-~~~~K~ 226 (262)
T PF14500_consen 150 VILQEFDI-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST-PLFAPFAFPLLLEKLDST-SPSVKL 226 (262)
T ss_pred HHHHhccc-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc-HhhHHHHHHHHHHHHcCC-CcHHHH
Confidence 11111111 11111110000 00001233444444321 111245677777777665 556899
Q ss_pred HHHHHHHHHHHHhcc-CccccHHHHHHHHHH
Q 003195 377 GVASFISLLVQKIGM-DIKPYTSMLLRLLFP 406 (840)
Q Consensus 377 ~a~~~l~~L~~~~~~-~~~p~~~~lL~~Ll~ 406 (840)
.+++.+..-+.++|. .+.||...+-..+-.
T Consensus 227 D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 227 DSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 999999888888874 366777766665543
No 133
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.87 E-value=0.82 Score=61.95 Aligned_cols=315 Identities=11% Similarity=0.109 Sum_probs=174.2
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhcc-------CC-hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcc
Q 003195 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVA-------DP-KRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQG 187 (840)
Q Consensus 116 ~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~-------d~-~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~ 187 (840)
-+++.|..++...++.++.+...+.+.+-. ++ ....-..+..+++.++...-++.|..|.+.|.++.-+++.
T Consensus 984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhh
Confidence 467777777888888998886665554432 11 1122335677888888888999999999999999999988
Q ss_pred CCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccch-HHhHHHhHHHHHHhcccCCchhH
Q 003195 188 RKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISD-ARQSMDIVLPFLLAEGILSKVDS 266 (840)
Q Consensus 188 ~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~-~~~~l~~lLP~Ll~~gL~s~~~e 266 (840)
.+..-+-.+.-+++..++-++.|....+-..+...++....-..|.+-........ .......+-|+. .++.++...
T Consensus 1064 ~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv--~eL~npN~~ 1141 (3550)
T KOG0889|consen 1064 MPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLV--LELFNPNSD 1141 (3550)
T ss_pred chHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--HHHcCCchH
Confidence 77666778888999999888887666555544344443333223333222111111 122333334433 368888889
Q ss_pred HHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccC-c--hh---HhHHHHHHhhhh--c--ccchhhhHHHHHhhccC
Q 003195 267 ISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSS-L--ED---QGLNYIELHAAN--A--GIQTEKLENLRISIAKG 336 (840)
Q Consensus 267 vr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~-~--ep---~~~~~l~~~a~~--~--~~~~~~~d~~R~~~~~~ 336 (840)
||+++...|..++...|.. +++++..+-+.+.. . .| .-++....+.+. + .+..+.+ ..
T Consensus 1142 VR~~~~~~L~~i~~~s~~~----v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f--------~~ 1209 (3550)
T KOG0889|consen 1142 VREFSQKLLRLISELSGKS----VVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLF--------DF 1209 (3550)
T ss_pred HHHHHHHHHHHHHHHcCCc----HHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCccc--------Cc
Confidence 9999999999999887654 45555555555411 0 00 000000000000 0 0000000 00
Q ss_pred CcHHHHHHHHHhhc-ChhhHhhHHHHHHHHHh--ccC-CCchHhHHHHHHHHHHHHhc---cCccccHHHHHHHHHHhHh
Q 003195 337 SPMWDTLDLCINVV-DTESLDQLVPHLARLVR--SGI-GLNTRVGVASFISLLVQKIG---MDIKPYTSMLLRLLFPVVK 409 (840)
Q Consensus 337 s~l~eal~~~~~~~-d~~~l~~lvp~L~~~lk--~~~-~~~~r~~a~~~l~~L~~~~~---~~~~p~~~~lL~~Ll~~l~ 409 (840)
......+......+ |.+ ..+... +.++.. ... -.+-|+.|.+.++....... ....+|-++++..+++.+
T Consensus 1210 ~~~l~~l~~~~~~La~~~-~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l- 1286 (3550)
T KOG0889|consen 1210 TEELYRLKRFLIALADAE-EDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSL- 1286 (3550)
T ss_pred hHHHHHHHHHHHHhhhhh-hhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHH-
Confidence 00000000000000 100 001111 111110 000 12337778777765433222 234578899999999999
Q ss_pred hcCcHHHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHhh
Q 003195 410 EEKSAAAKRAFASACASVLKY---ATPSQAQKLIEETAALH 447 (840)
Q Consensus 410 ~d~~~~Vr~~a~~Alg~l~~~---~~~~~~~~li~~l~~~~ 447 (840)
.-++..+...+..++.....- ++.+.++..+.+++..+
T Consensus 1287 ~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l 1327 (3550)
T KOG0889|consen 1287 YKRSSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNL 1327 (3550)
T ss_pred cCChHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhh
Confidence 567788888888777666543 45667777776665554
No 134
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.85 E-value=0.44 Score=55.30 Aligned_cols=155 Identities=19% Similarity=0.182 Sum_probs=101.7
Q ss_pred HHHHHHHhhhcCCch-HHHHHHHHhc-------cccchhhhhhHHhHHHHHHHHhhh-hh-chhhhhHHHHHHhhcCCCC
Q 003195 60 YKELCNLANEMGQPD-LIYKFMDLAN-------YQVSLNSKRGAAFGFSKIAKQAGD-AL-KPHLRLLIPKLVRFQYDPD 129 (840)
Q Consensus 60 yk~l~~lA~~~g~p~-lv~~fm~la~-------~~~~w~sr~gA~~~l~~I~~~~~~-~l-~~~l~~lvP~L~~~~~Dp~ 129 (840)
|+.+++=+-+++..+ +--.|....+ +.. ...| ---|. ..+.+.... .+ +..+..++-.|+|....|.
T Consensus 22 ~~kl~~k~~em~t~~~F~eeflr~vn~il~vkKres-i~dR-Il~fl-a~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskd 98 (892)
T KOG2025|consen 22 YSKLLAKVMEMLTAHEFSEEFLRVVNYILLVKKRES-IPDR-ILSFL-ARFVESLPQLDKEEDLVAGTFYHLLRGTESKD 98 (892)
T ss_pred HHHHHHHHHHhhhHhhhHHHHHHHHHHheeeccCCC-cHHH-HHHHH-HHHHHhhhccCchhhHHHHHHHHHHhcccCcc
Confidence 888999998888873 4444555443 221 1112 11111 222222110 11 1256788999999999999
Q ss_pred HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchh--hhHHHHHHHHHHHHH
Q 003195 130 KNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQ--VGKHLRRIWTAAFRA 207 (840)
Q Consensus 130 ~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~--l~~~L~~l~~~l~~~ 207 (840)
..||.-.+.++..++.+-...-+.-++.+...++..+.|+++-||--|..||..+-+....+. +...+..+ .
T Consensus 99 k~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~l------i 172 (892)
T KOG2025|consen 99 KKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDL------I 172 (892)
T ss_pred hhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHH------H
Confidence 999999999999998643333355688899999999999999999999999988753222222 22222222 1
Q ss_pred hccccHHHHHHHHHHH
Q 003195 208 MDDIKETVRTAGDKLC 223 (840)
Q Consensus 208 ldD~~~~VR~aA~~~~ 223 (840)
-.|+.+.||++|..-+
T Consensus 173 qnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 173 QNDPSDEVRRAALSNI 188 (892)
T ss_pred hcCCcHHHHHHHHHhh
Confidence 4699999999986554
No 135
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=2.3 Score=50.63 Aligned_cols=86 Identities=13% Similarity=0.060 Sum_probs=52.8
Q ss_pred cchhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 003195 552 ESLSNYHHVLLESIMKEVP-GRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLE 630 (840)
Q Consensus 552 ~~l~~~l~~llp~L~~~l~-~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~ 630 (840)
+.+.+|...++|+|++... .-.+++|..+|.|+.-+.--....+...-- --..+-..+...+..++..+-..|+....
T Consensus 547 el~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slL-k~~~vSS~lAG~lsskD~~vlVgALQvAE 625 (1051)
T KOG0168|consen 547 ELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLL-KNTNVSSHLAGMLSSKDLTVLVGALQVAE 625 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHH-hcchHHHHHHhhhhcCCCeeEeehHHHHH
Confidence 3567789999999999995 446899999999998886533221110000 00111223333454556666667777777
Q ss_pred HHHHHcCC
Q 003195 631 QVIKAFRD 638 (840)
Q Consensus 631 ~l~~~~~~ 638 (840)
-|++.+|+
T Consensus 626 iLmeKlpd 633 (1051)
T KOG0168|consen 626 ILMEKLPD 633 (1051)
T ss_pred HHHHHhHH
Confidence 77776665
No 136
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=95.74 E-value=0.56 Score=52.26 Aligned_cols=228 Identities=14% Similarity=0.195 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhH---------hHHHHHHhhhhcccchhhhHHHHHhhcc
Q 003195 265 DSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQ---------GLNYIELHAANAGIQTEKLENLRISIAK 335 (840)
Q Consensus 265 ~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~---------~~~~l~~~a~~~~~~~~~~d~~R~~~~~ 335 (840)
+.+|...|+.+...+++..+.+.||+|+.+....+.|....++ .++|+...+... ..+ ....
T Consensus 110 ~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~--------~~~-~lf~ 180 (370)
T PF08506_consen 110 EKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESP--------HHK-NLFE 180 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSH--------HHH-TTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcch--------hHH-HHhC
Confidence 6788889999999999999999999999999999888653322 122222111100 000 0011
Q ss_pred CCcH-HHHHHHH-Hhhc-----ChhhHhhHHHHHHHHHhccC---CC-chHhHHHHHHHHHHHHhccCccccHHHHHHHH
Q 003195 336 GSPM-WDTLDLC-INVV-----DTESLDQLVPHLARLVRSGI---GL-NTRVGVASFISLLVQKIGMDIKPYTSMLLRLL 404 (840)
Q Consensus 336 ~s~l-~eal~~~-~~~~-----d~~~l~~lvp~L~~~lk~~~---~~-~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~L 404 (840)
..+. ...++.+ ++.+ |.+.++. .=.+-++... +. ..|.+|++++-.|+.+.+..+.+-...++..+
T Consensus 181 ~~~~L~~Iie~VI~Pnl~~~e~D~ElfEd---dP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~ 257 (370)
T PF08506_consen 181 NKPHLQQIIEKVIFPNLCLREEDEELFED---DPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQL 257 (370)
T ss_dssp SHHHHHHHHHHTHHHHHS--HHHHHHHHH---SHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCccCCCHHHHHHHcc---CHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 1111 1112221 1221 1121110 0011122111 22 34668899998888777655544444444444
Q ss_pred HHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHhhch-------------hh
Q 003195 405 FPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVAS-------------DV 471 (840)
Q Consensus 405 l~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~-------------~~ 471 (840)
+....++++ .|+..+.++..++++++.... +.
T Consensus 258 l~~y~~~~~-----------------------------------~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 258 LQQYASNPS-----------------------------------NNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp HHHHHH-TT-----------------------------------T-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred HHHHhhCCc-----------------------------------ccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 433322211 122333444455555543220 11
Q ss_pred hhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHH
Q 003195 472 LSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAI 543 (840)
Q Consensus 472 f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L 543 (840)
-.-+...++|-+. ......+-+|.-+.+....+....+ +..+..+++.+..+|.+++.-|+-.||.||
T Consensus 303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~---~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP---KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1223344667553 2223445566555555555444332 357788999999999999999999999875
No 137
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.70 E-value=6.5 Score=46.72 Aligned_cols=134 Identities=12% Similarity=0.191 Sum_probs=107.4
Q ss_pred HHHHHHhhhcCC-CHHHHHHHHHHHHHHHHHh---CcchhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHHHHHhcccc
Q 003195 520 IVSLICEGIASS-SWSSKRKSAKAICKLGEIL---GESLSNYHHVLLESIMKEVPGR-LWEGKDALLYAIGSISTSCHKD 594 (840)
Q Consensus 520 Il~~l~~~L~d~-s~~vR~~Aa~~L~~La~~~---~~~l~~~l~~llp~L~~~l~~r-~~~~Ke~vl~aL~~l~~~~~~~ 594 (840)
...++++.++|. +--||-+++.++.-++.-. .+.|.||++.++..+.+-++.- +.+.|-.||..++.++...++.
T Consensus 527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~ 606 (978)
T KOG1993|consen 527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEH 606 (978)
T ss_pred HHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 445666777887 7889999999999998753 3578889999999888888643 4688999999999999998876
Q ss_pred cccCCCCchHHHHHH---HHHHHhhcCHHHHHHHHHHHHHHHHHcCCc--chHHhHHHHHHhhcccccc
Q 003195 595 ISAEDPTTPFAIVDM---VSSACRKKIKKYREAAFSCLEQVIKAFRDP--KFFNIIFPLLFEMCGSTAL 658 (840)
Q Consensus 595 ~~~~~~~~~~~i~~~---l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~--~l~~~v~~i~~~l~~~~~~ 658 (840)
+. |+..+|+.. +.++. ++.+-.|-+-+.+|..++.+++.+ .++.++.|+++...|.+.|
T Consensus 607 I~----P~~~~ivq~lp~LWe~s-~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP 670 (978)
T KOG1993|consen 607 IA----PYASTIVQYLPLLWEES-EEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSP 670 (978)
T ss_pred hh----HHHHHHHHHHHHHHhhh-ccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCC
Confidence 64 666666554 44555 357789999999999999999874 4799999999998888666
No 138
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=95.68 E-value=0.03 Score=68.11 Aligned_cols=122 Identities=18% Similarity=0.141 Sum_probs=88.7
Q ss_pred HHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhH-HHHHHH
Q 003195 101 KIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRS-REASCL 179 (840)
Q Consensus 101 ~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrv-R~aac~ 179 (840)
+++-..++++.| +.+.+|+||.+.+.+++.||.++.+++..+.+.. -.+-+..++..++..+++-+--+ |+++..
T Consensus 802 s~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~---~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e 877 (1549)
T KOG0392|consen 802 SLAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSA---TRETMATVINGFLPLLGDLDKFVRRQGADE 877 (1549)
T ss_pred HHHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhccchhhHhhhhhHHH
Confidence 334445677888 8889999999999999999999999998887643 23334444455555555555444 455555
Q ss_pred HHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 003195 180 SLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVT 227 (840)
Q Consensus 180 Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~ 227 (840)
.+.-+... ....+.+|.+-+++.+++.|+|..++||.+|.+.+..+.
T Consensus 878 ~~~~l~~~-l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~li 924 (1549)
T KOG0392|consen 878 LIELLDAV-LMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLI 924 (1549)
T ss_pred HHHHHHHh-hcccccccceeehhhhhcccccchHHHHHHHHHHHHHHh
Confidence 54444332 223577899999999999999999999999988887764
No 139
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.64 E-value=1.5 Score=47.61 Aligned_cols=185 Identities=14% Similarity=0.057 Sum_probs=118.4
Q ss_pred hhhhhhHHhHHHHHHHH--hhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccC--ChHHHHHHHHHHHHHHHH
Q 003195 89 LNSKRGAAFGFSKIAKQ--AGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVAD--PKRTIDEHLDLIFDDLLI 164 (840)
Q Consensus 89 w~sr~gA~~~l~~I~~~--~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d--~~~~i~~~~~~Il~~Ll~ 164 (840)
-..|.++.-++-.++.. ..+.+..+...|++.+.++..=..+.=+..+.++...++-. +....++.++.+.|.|..
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~ 136 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKR 136 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHH
Confidence 46677777788666654 35777778888999999988877776666667777666422 223356667777777777
Q ss_pred hhCCCC--hhHHHHHHHHHH--HHHccCCchhhh---HHHHHHHHHHHHHhccc--------cHHHHHHHHHHHHHHHHH
Q 003195 165 QSGSRL--WRSREASCLSLA--DIIQGRKFDQVG---KHLRRIWTAAFRAMDDI--------KETVRTAGDKLCRSVTSL 229 (840)
Q Consensus 165 ~l~~~~--wrvR~aac~Al~--~Ll~~~~~~~l~---~~L~~l~~~l~~~ldD~--------~~~VR~aA~~~~~~l~~~ 229 (840)
.+.|.. ..+|.+++.||+ .++.+...+.+. +.+..+|....--.+.. .+.|..+|.....-|..
T Consensus 137 ~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt- 215 (309)
T PF05004_consen 137 ILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLT- 215 (309)
T ss_pred HHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHh-
Confidence 766544 567777765554 455555555555 66666766554222222 24566777665544432
Q ss_pred HHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhc
Q 003195 230 TIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAG 283 (840)
Q Consensus 230 ~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g 283 (840)
.++.. .....+...+|.|.. -|.+++.+||..|.++|.-+.+...
T Consensus 216 ---~~~~~-----~~~~~~~~~~~~l~~-lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 216 ---TLPDS-----KLEDLLEEALPALSE-LLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred ---cCCHH-----HHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 22211 133556677888764 3677888999999999888877654
No 140
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=95.58 E-value=0.24 Score=48.69 Aligned_cols=114 Identities=12% Similarity=0.046 Sum_probs=88.5
Q ss_pred chhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCC-hHHHHHHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHHHccC
Q 003195 111 KPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP-KRTIDEHLDLIFDDLLIQSGSRLW-RSREASCLSLADIIQGR 188 (840)
Q Consensus 111 ~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~-~~~i~~~~~~Il~~Ll~~l~~~~w-rvR~aac~Al~~Ll~~~ 188 (840)
+..+.+++-++..+..++++.-|.......+.++.+. .+.+.++....+..++..+.+++. .+++++|.++..++.-.
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 3467788888899999999999999999999999875 577778889999999998877664 67999999999988631
Q ss_pred -C-----chhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 003195 189 -K-----FDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSV 226 (840)
Q Consensus 189 -~-----~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l 226 (840)
+ .+...|.++.+++.++..+++ +.+...+..++..+
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~l 141 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATL 141 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence 1 234568899999999988886 44444554444444
No 141
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=5.5 Score=47.60 Aligned_cols=182 Identities=9% Similarity=0.094 Sum_probs=97.4
Q ss_pred hhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHH-HHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHccCCc
Q 003195 113 HLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEH-LDLIFDDLLIQSGSR-LWRSREASCLSLADIIQGRKF 190 (840)
Q Consensus 113 ~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~-~~~Il~~Ll~~l~~~-~wrvR~aac~Al~~Ll~~~~~ 190 (840)
.+.+|+-.| +.-.||...+.... .....|+-...+++..+ ++.++|.|...+.++ +.++--.||.|+..+++..+.
T Consensus 168 k~kkLL~gL-~~~~Des~Qleal~-Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 168 KAKKLLQGL-QAESDESQQLEALT-ELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred HHHHHHHhc-cccCChHHHHHHHH-HHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 444555554 22226766666543 33333332233445543 566777777777655 478999999999999987653
Q ss_pred h--hhhHHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHH
Q 003195 191 D--QVGKHLRRIWTAAFRAMDDIKE-TVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSI 267 (840)
Q Consensus 191 ~--~l~~~L~~l~~~l~~~ldD~~~-~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~ev 267 (840)
. .+..| ..+|.++.-|.-|.- .|-+.+.+++..++..--+.|-. ...+..+|.|| ..-+ -.+
T Consensus 246 S~a~vV~~--~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~--------AG~l~a~Lsyl---DFFS--i~a 310 (1051)
T KOG0168|consen 246 SSAIVVDE--HAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQ--------AGALSAVLSYL---DFFS--IHA 310 (1051)
T ss_pred hhheeecc--cchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHh--------cccHHHHHHHH---HHHH--HHH
Confidence 2 12221 233333332222211 24444444444443321111110 01223334443 1111 246
Q ss_pred HHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHH
Q 003195 268 SKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNY 311 (840)
Q Consensus 268 r~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~ 311 (840)
+..|+.+..++|+....+=-.|+-+.+|.|...|+....+.+-+
T Consensus 311 QR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies 354 (1051)
T KOG0168|consen 311 QRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIES 354 (1051)
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHH
Confidence 77899999999999876545666788999999887554444433
No 142
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.53 E-value=0.2 Score=49.67 Aligned_cols=135 Identities=18% Similarity=0.161 Sum_probs=87.0
Q ss_pred hhhHHhHHHHHHHH-hhhhhchhhhhHHHHH------------HhhcCCCCHhHHHHHHHHHHHhccCChHHH-------
Q 003195 92 KRGAAFGFSKIAKQ-AGDALKPHLRLLIPKL------------VRFQYDPDKNVQDAMAHIWKSLVADPKRTI------- 151 (840)
Q Consensus 92 r~gA~~~l~~I~~~-~~~~l~~~l~~lvP~L------------~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i------- 151 (840)
|.+|...|+.+++. ..+.+-+|...++|-- .-..+||+++||.++.....+|...++..+
T Consensus 3 R~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~ 82 (182)
T PF13251_consen 3 RQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESK 82 (182)
T ss_pred hHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcC
Confidence 44555666666665 3344445544444433 223579999999999999888887654422
Q ss_pred ---------HHHHHHHHH----HHHHhhCC-CChhHHHHHHHHHHHHHccCCchhhh-HHHHHHHHHHHHHhccccHHHH
Q 003195 152 ---------DEHLDLIFD----DLLIQSGS-RLWRSREASCLSLADIIQGRKFDQVG-KHLRRIWTAAFRAMDDIKETVR 216 (840)
Q Consensus 152 ---------~~~~~~Il~----~Ll~~l~~-~~wrvR~aac~Al~~Ll~~~~~~~l~-~~L~~l~~~l~~~ldD~~~~VR 216 (840)
...+-.++- .|+..+.. ++..+-...+.+++.+++..+.+.+. +++..+|..+...+.+.+..||
T Consensus 83 ~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~ 162 (182)
T PF13251_consen 83 GPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVR 162 (182)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHH
Confidence 112222222 23333332 34556667788889999988877665 5677888888777888888899
Q ss_pred HHHHHHHHHH
Q 003195 217 TAGDKLCRSV 226 (840)
Q Consensus 217 ~aA~~~~~~l 226 (840)
.++......+
T Consensus 163 v~~l~~~~~l 172 (182)
T PF13251_consen 163 VAALSCLGAL 172 (182)
T ss_pred HHHHHHHHHH
Confidence 8887666655
No 143
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=95.51 E-value=16 Score=49.82 Aligned_cols=450 Identities=15% Similarity=0.166 Sum_probs=229.0
Q ss_pred HHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHccCCchhhhHHHHH
Q 003195 121 LVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQS-GSRLWRSREASCLSLADIIQGRKFDQVGKHLRR 199 (840)
Q Consensus 121 L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l-~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~ 199 (840)
++....|++-.+|.++.-+.+.+.+..+..+-.++..++....+.+ .+..-|+.+.+..-+..++.+.. .-+.+|...
T Consensus 570 ~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~-~~i~~~v~~ 648 (2341)
T KOG0891|consen 570 LFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSP-VLISPYVGP 648 (2341)
T ss_pred HHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHH-HHHHhhcCc
Confidence 6677788888888888888877765444444444544444444433 22233555555444444443322 246677778
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCC-chhHHHHHHHHHHHHH
Q 003195 200 IWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILS-KVDSISKASIGVVMKL 278 (840)
Q Consensus 200 l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s-~~~evr~~al~~L~~l 278 (840)
++..+...+.|.+..|-.++......+..+.. .+-...++..++.+. +++.. +...-|..++.+++++
T Consensus 649 ~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g----------~~~~~~~~~~~~~~~-~~l~~~s~~~rr~aslk~l~~l 717 (2341)
T KOG0891|consen 649 ILLVLLPKLQDPSSGVEKAVLETIGELCAVGG----------EEMVKWVDELFSLII-KMLQDQSSLGKRLAALKALGQL 717 (2341)
T ss_pred hHHHHHHHHhccchhhHHHHHHHHHHHHHhcc----------chhhhccchHHHHHH-HHHHHhhhhhchhHHHHHhhhh
Confidence 88888888888887665555444433322210 011112233344333 23332 3456677889999999
Q ss_pred HHhhccccccch--HHHHHHHHHhccCchhHhHHHHHH----hhh---hcccch-hhhHHHHHhh--ccCCcHHHHHHHH
Q 003195 279 VKGAGIAIRPHL--SDLVSCMLESLSSLEDQGLNYIEL----HAA---NAGIQT-EKLENLRISI--AKGSPMWDTLDLC 346 (840)
Q Consensus 279 a~~~g~~l~p~l--p~Lv~~Ll~~ls~~ep~~~~~l~~----~a~---~~~~~~-~~~d~~R~~~--~~~s~l~eal~~~ 346 (840)
.+..|-.+.||. |.++..|.+.+......-++-... +++ .|.... ......+... .+...... ..
T Consensus 718 ~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~~~~~~~~~~~~~~~~~~~k~~~~~~---~~ 794 (2341)
T KOG0891|consen 718 ESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPYKHKVTEGTSASKISSEQIKSDIDIS---LL 794 (2341)
T ss_pred hcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchhHHHHHhhhhhHhhhhccccccchHH---HH
Confidence 998887777776 667777766554322211111000 000 000000 0000000000 00000011 01
Q ss_pred HhhcChhhHhhHHHH-----HHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHH
Q 003195 347 INVVDTESLDQLVPH-----LARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFA 421 (840)
Q Consensus 347 ~~~~d~~~l~~lvp~-----L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~ 421 (840)
......+. .+..|. +...+++..+.-.=.++++.+.......|....+|.++.++.++.... --....+..+-
T Consensus 795 ~~~~~~~~-~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r-~~~~~~~~f~~ 872 (2341)
T KOG0891|consen 795 ESGVNPSN-DEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMR-SCPPNLREFYF 872 (2341)
T ss_pred Hhhhhhhh-hhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHH-hcCcchhHHHH
Confidence 00111111 222222 222333321111112556666667788888888999999888877762 12222222222
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhhc----CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchH-HHH
Q 003195 422 SACASVLKYATPSQAQKLIEETAALHI----DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKY-VSD 496 (840)
Q Consensus 422 ~Alg~l~~~~~~~~~~~li~~l~~~~~----~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~-vr~ 496 (840)
.=+..++-. ....+..+++....... .+-....+...++..+....+..|..+.+..+|..+... ..+.. .|.
T Consensus 873 ~q~~~~~~~-~~~h~~~~~~~i~~~i~~~~~~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~~~~l~~~-~~~~s~~~~ 950 (2341)
T KOG0891|consen 873 QQLTSLVAI-VRQHIRPYMESIFTLIKDFWPPDTSLQITIISLIEDIAVALGGEFKKYLPELLPTMLTVL-QHDKSKDRV 950 (2341)
T ss_pred Hhhhhhhhc-cchhHhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhccchheee-cccccchHH
Confidence 212111111 11122334433333221 122333455667777778888889999988888766544 22221 121
Q ss_pred HHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCC--CHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCc
Q 003195 497 LFEELWEENTSGDRVTLQLYLGEIVSLICEGIASS--SWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLW 574 (840)
Q Consensus 497 ~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~--s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~ 574 (840)
.-..+...+...+ ..+..|..-+.+.+.+.+.+. ...+|..+-.+++.++... .+..+...+.-.+.+.+... .
T Consensus 951 ~~~~~~~~~~~~~-~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~l~~~~--~~~~~~s~i~~~~~r~l~~s-~ 1026 (2341)
T KOG0891|consen 951 VSRKVLQSLQKFG-SNLEQYLHLLLPPIVKLFEDPTVPLSIRKSALITIGRLAQQV--DLSEYASRIIHPLVRVLSSS-P 1026 (2341)
T ss_pred HHHHhhHHHHhcC-ccHHhhHhhhccHHHHHHhhhhhhHHHHhhHHHHHHHHHHhh--HHHHHHHHHHHHHHHhhccc-h
Confidence 1111111111111 234456666667777777776 6678888888888888653 34445666666667777654 5
Q ss_pred hhHHHHHHHHHHHHHhccc
Q 003195 575 EGKDALLYAIGSISTSCHK 593 (840)
Q Consensus 575 ~~Ke~vl~aL~~l~~~~~~ 593 (840)
+.+..+...+..+....+.
T Consensus 1027 el~~~~~~~l~~l~~~~~~ 1045 (2341)
T KOG0891|consen 1027 ELRDVIMDTLIALVKQLGK 1045 (2341)
T ss_pred hHHHHHHHHHHHHHHhhcC
Confidence 6667777777777776654
No 144
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.50 E-value=0.7 Score=48.65 Aligned_cols=147 Identities=11% Similarity=0.060 Sum_probs=95.9
Q ss_pred hHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhhh--hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCC--hH
Q 003195 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLR--LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP--KR 149 (840)
Q Consensus 74 ~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~--~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~--~~ 149 (840)
+-+.+++.+...+.+...++-|.++++..+.-. .-+..+. ..+|.+-....||+|.||..+..+...+..+. +.
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~--~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFP--FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh--hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence 445777777766656677777888888765432 1112222 35666666789999999998888888887654 34
Q ss_pred HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 003195 150 TIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVT 227 (840)
Q Consensus 150 ~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~ 227 (840)
.++.|++.+++.+...- -+-.++.++..+|.++.-.. .+...+...++.+++++....+.+|..+.+.+..++
T Consensus 90 ~Ik~~i~~Vc~~~~s~~--lns~~Q~agLrlL~nLtv~~---~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 90 QIKMYIPQVCEETVSSP--LNSEVQLAGLRLLTNLTVTN---DYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHccCCCc---chhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 66778888877776632 23377888888888874222 222333344555566666667778887777776664
No 145
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=1.4 Score=47.57 Aligned_cols=186 Identities=14% Similarity=0.124 Sum_probs=105.4
Q ss_pred cccchhhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHH-HHHHHH
Q 003195 85 YQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDL-IFDDLL 163 (840)
Q Consensus 85 ~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~-Il~~Ll 163 (840)
++.....+.+|..-|...++..+..-+=.=...++.|+.|..++++.||..+..+++..+.|-++.....+.. -++.|+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 3444677888887777777654322111111334444559999999999999999999998876655544332 555666
Q ss_pred HhhCC-CChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHH--HHHHHHHHHHHHHHHHhhhccccc
Q 003195 164 IQSGS-RLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVR--TAGDKLCRSVTSLTIRLCDVTLTE 240 (840)
Q Consensus 164 ~~l~~-~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR--~aA~~~~~~l~~~~ir~~~~~~~~ 240 (840)
..+.. ..-++|..|-.|+..++....+-+-.-.--.=+.+|..+|.+....|| .-+.-++..+..- +.+
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~-----~~s--- 244 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE-----DKS--- 244 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh-----hhh---
Confidence 66643 445889999999999998654332211112236677778877433332 2233333333211 000
Q ss_pred cchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHH
Q 003195 241 ISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVK 280 (840)
Q Consensus 241 ~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~ 280 (840)
+-..+-...+|..+..=..+..++++..++.++.....
T Consensus 245 --~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 245 --DEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred --hhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 01111122233332211123456788888777766554
No 146
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.44 E-value=7.4 Score=45.68 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Q 003195 153 EHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIR 232 (840)
Q Consensus 153 ~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir 232 (840)
..++.++..++.+..+++..||.-+|.-++-++.... +.-...+..|...+..-+-|-.+.||..|..++..+..
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~-eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~---- 155 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENA-EIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG---- 155 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccc-ccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc----
Confidence 3788899999999999999999999998888876321 22234455666667766789999999998777766532
Q ss_pred hhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHH
Q 003195 233 LCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVV 275 (840)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L 275 (840)
++.. .--++.+. +-.+++ .++++|||..++..+
T Consensus 156 --d~~d----ee~~v~n~-l~~liq---nDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 156 --DPKD----EECPVVNL-LKDLIQ---NDPSDEVRRAALSNI 188 (892)
T ss_pred --CCCC----CcccHHHH-HHHHHh---cCCcHHHHHHHHHhh
Confidence 1110 11234443 444442 457889999887765
No 147
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=95.38 E-value=7.5 Score=45.42 Aligned_cols=188 Identities=13% Similarity=0.080 Sum_probs=107.4
Q ss_pred ccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc--C-C---------hhhhHHHHHHHH
Q 003195 395 PYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI--D-D---------KNSQISCAILLK 462 (840)
Q Consensus 395 p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~--~-d---------~~~r~~~~~~i~ 462 (840)
+-.+.+++.++.. .|.+.+|.+.+-..+.++.....+. .++.+|.+.|. + + +..|.. ++.
T Consensus 234 ~d~~~~~~~liAs--ad~~~~V~~~ae~~LKr~~~~~ed~---~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~k---IL~ 305 (501)
T PF13001_consen 234 PDEERFPPLLIAS--ADSNSSVSDRAEDLLKRLSVSLEDP---DLVDRLFDLYLGKGIPPENGRPPASPRLQEK---ILS 305 (501)
T ss_pred CcHhHHhheeeEE--eCCcchHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHhcCCchhcCCCCCCHHHHHH---HHH
Confidence 4445555555544 4778888888877776665443333 45666666665 2 1 223322 233
Q ss_pred HHHhhchhhhhhhHhhHhHHHHHhhcCC--chHHHHHHHHHH---HHhcC-CChhhHHhhHHHHHHHHHhhhc-------
Q 003195 463 SYSSVASDVLSGYHAVIVPVIFISRFED--DKYVSDLFEELW---EENTS-GDRVTLQLYLGEIVSLICEGIA------- 529 (840)
Q Consensus 463 ai~~~~~~~f~~~~~~llP~l~~~~~d~--d~~vr~~~~~i~---~~~~~-~~~~~i~~yl~~Il~~l~~~L~------- 529 (840)
-+++... -....+.++.+++.+.+.+ ...+|....+.. ..... .....+...-+.|..-....++
T Consensus 306 ~L~kS~~--Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~ 383 (501)
T PF13001_consen 306 LLSKSVI--AATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSN 383 (501)
T ss_pred HHHHhHH--HHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCC
Confidence 3333211 0123344666667777665 334544322221 11111 1112233333333333333332
Q ss_pred -CCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhccc
Q 003195 530 -SSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHK 593 (840)
Q Consensus 530 -d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~ 593 (840)
..+-..|..++.+||.|++..+..+..- -.++.-|.+++.+.+.+.|-.|-+||++++..+..
T Consensus 384 ~~~~~~lR~~aYe~lG~L~~~~p~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 384 SSEDIELRSLAYETLGLLAKRAPSLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred CcccHHHHHHHHHHHHHHHccCccccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 3467899999999999999988766332 34666677777777889999999999999987764
No 148
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.18 Score=55.04 Aligned_cols=112 Identities=15% Similarity=0.102 Sum_probs=97.1
Q ss_pred hhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchh
Q 003195 113 HLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQ 192 (840)
Q Consensus 113 ~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~ 192 (840)
.+..++|++ .+.|..||+.+..=++.+...-+..+..|+-++++.+...+.|.+.-||.++-..+..++.....+.
T Consensus 59 tlkeLl~ql----kHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~ 134 (393)
T KOG2149|consen 59 TLKELLSQL----KHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED 134 (393)
T ss_pred cHHHHHhhh----cCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh
Confidence 567889997 9999999999988777777654567788999999999999999999999999999988888777777
Q ss_pred hhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 003195 193 VGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTS 228 (840)
Q Consensus 193 l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~ 228 (840)
++++..-+++.++.+|..+.+.||.-+.+.+.-+..
T Consensus 135 ~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~ 170 (393)
T KOG2149|consen 135 QSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLE 170 (393)
T ss_pred hcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHH
Confidence 899999999999999999999999988776665543
No 149
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=95.20 E-value=10 Score=45.93 Aligned_cols=144 Identities=10% Similarity=0.090 Sum_probs=82.1
Q ss_pred HHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHH-HH-----------
Q 003195 75 LIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIW-KS----------- 142 (840)
Q Consensus 75 lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw-~~----------- 142 (840)
.+|.+|...=-...-.-|+.|+..|..|.+--+-.. -..|+-.+..-.-||--.++.+..+.. ..
T Consensus 472 ~~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~---~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt 548 (1529)
T KOG0413|consen 472 VLYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHRE---AFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTT 548 (1529)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccc---hHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccch
Confidence 566666544222223566777777777765322111 123666666667777777777753322 11
Q ss_pred --------hccCCh-HHHHH----HHHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHh
Q 003195 143 --------LVADPK-RTIDE----HLDLIFDDLLIQSG-SRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAM 208 (840)
Q Consensus 143 --------Lv~d~~-~~i~~----~~~~Il~~Ll~~l~-~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~l 208 (840)
++.|.+ +.+.+ ....+|.-++..+. |..--||.++|.-+...+..+..... ++..+-.|-..+
T Consensus 549 ~~l~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~---fe~~L~iLq~lC 625 (1529)
T KOG0413|consen 549 DLLLDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASK---FEVVLSILQMLC 625 (1529)
T ss_pred hhcCcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhc---chhHHHHHHHHh
Confidence 111111 11111 24557777777776 55568899999999988887764333 334333333446
Q ss_pred ccccHHHHHHHHHHHH
Q 003195 209 DDIKETVRTAGDKLCR 224 (840)
Q Consensus 209 dD~~~~VR~aA~~~~~ 224 (840)
.|...+||+.+...+.
T Consensus 626 rd~~vsvrk~~~~Slt 641 (1529)
T KOG0413|consen 626 RDRMVSVRKTGADSLT 641 (1529)
T ss_pred cCcchHHHHHHHHHHH
Confidence 7899999997754443
No 150
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.18 E-value=12 Score=46.56 Aligned_cols=124 Identities=14% Similarity=0.189 Sum_probs=83.1
Q ss_pred HHHHhhhcCCchHHHHHHHH----hccccchhhhhhHHhHHHHHHHHh--hhhhchh---hh-hHHHHHHhhcCCCCHhH
Q 003195 63 LCNLANEMGQPDLIYKFMDL----ANYQVSLNSKRGAAFGFSKIAKQA--GDALKPH---LR-LLIPKLVRFQYDPDKNV 132 (840)
Q Consensus 63 l~~lA~~~g~p~lv~~fm~l----a~~~~~w~sr~gA~~~l~~I~~~~--~~~l~~~---l~-~lvP~L~~~~~Dp~~~V 132 (840)
|..||.-+ |.+..++|.+ .++. .+.-|.+..-..+.+.... ++++++. ++ .++-.|...++|-++-|
T Consensus 299 L~elS~~~--P~l~~~~l~~lv~lld~e-s~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~v 375 (1251)
T KOG0414|consen 299 LVELSERV--PKLMLRQLTLLVDLLDSE-SYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYV 375 (1251)
T ss_pred HHHHHHHh--HHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHH
Confidence 44444433 3445555542 2222 2555555554456654332 3343333 33 37777777889999999
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCc
Q 003195 133 QDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKF 190 (840)
Q Consensus 133 R~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~ 190 (840)
|.-+.++|..|..-.. .....+..|+......+.|++--||..|..-+..++...++
T Consensus 376 RskVLqv~~~l~~~~s-~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pf 432 (1251)
T KOG0414|consen 376 RSKVLQVFRRLFQQHS-IPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPF 432 (1251)
T ss_pred HHHHHHHHHHHHHccC-CCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999986432 22345788889899999999999999999999998886654
No 151
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=0.19 Score=52.94 Aligned_cols=170 Identities=15% Similarity=0.171 Sum_probs=106.4
Q ss_pred hHHHHHHhhcCCCCHhHHHHH--------------HHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 003195 116 LLIPKLVRFQYDPDKNVQDAM--------------AHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSL 181 (840)
Q Consensus 116 ~lvP~L~~~~~Dp~~~VR~a~--------------~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al 181 (840)
.+.++=|+-+.||+..+.++. .+-+..|..--+..+...+..++-.+++.+.+.---|-.+||.++
T Consensus 74 ~~~sk~l~~fd~p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~ 153 (334)
T KOG2933|consen 74 YIVSKNLSPFDDPEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTL 153 (334)
T ss_pred HhhhcccCccCcHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 355666666677777766653 222233332223455556777777788888887777888999999
Q ss_pred HHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccC
Q 003195 182 ADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGIL 261 (840)
Q Consensus 182 ~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~ 261 (840)
+++.+..... +..-+..++..|+.--++.+.-||+.|.+++.+...-. .+..++..++|++.
T Consensus 154 ~difs~ln~~-i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~v------------tp~~~L~~L~~~~~----- 215 (334)
T KOG2933|consen 154 ADIFSSLNNS-IDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHV------------TPQKLLRKLIPILQ----- 215 (334)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhcc------------ChHHHHHHHHHHHh-----
Confidence 9998754322 22355566666655557788899999998887774321 24567888888753
Q ss_pred CchhHHHHHHHHHHHHHHHhhc--cccccchHHHHHHHHHhccC
Q 003195 262 SKVDSISKASIGVVMKLVKGAG--IAIRPHLSDLVSCMLESLSS 303 (840)
Q Consensus 262 s~~~evr~~al~~L~~la~~~g--~~l~p~lp~Lv~~Ll~~ls~ 303 (840)
.....+|..++-.+.......| +...++.-++++.+-+-+++
T Consensus 216 ~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a~~~~~~d 259 (334)
T KOG2933|consen 216 HSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRAAQEQGSD 259 (334)
T ss_pred hhchhhhhhhhccccccceeccccchhhHhHHHHHHHHHhhhcc
Confidence 2345677777776666665554 22344555555555554443
No 152
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.09 E-value=11 Score=45.54 Aligned_cols=101 Identities=17% Similarity=0.141 Sum_probs=69.3
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhH
Q 003195 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGK 195 (840)
Q Consensus 116 ~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~ 195 (840)
..++.+..=++||||.+|-.+.+....+- ..+..+.+++.+.+.++|+...||+.|..|+..+.+--. +-+..
T Consensus 92 LavNti~kDl~d~N~~iR~~AlR~ls~l~------~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~-~l~~~ 164 (757)
T COG5096 92 LAVNTIQKDLQDPNEEIRGFALRTLSLLR------VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK-DLYHE 164 (757)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHhcC------hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH-hhhhc
Confidence 34555555669999999998877776553 345566777778899999999999999999999975321 11111
Q ss_pred H-HHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 003195 196 H-LRRIWTAAFRAMDDIKETVRTAGDKLCRSV 226 (840)
Q Consensus 196 ~-L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l 226 (840)
- +..+.. ..+.|..+.|-..|..++..+
T Consensus 165 ~g~~~~l~---~l~~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 165 LGLIDILK---ELVADSDPIVIANALASLAEI 193 (757)
T ss_pred ccHHHHHH---HHhhCCCchHHHHHHHHHHHh
Confidence 1 222222 236799998877776555544
No 153
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.93 E-value=1 Score=52.87 Aligned_cols=138 Identities=11% Similarity=0.088 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHhhCC-CChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Q 003195 152 DEHLDLIFDDLLIQSGS-RLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLT 230 (840)
Q Consensus 152 ~~~~~~Il~~Ll~~l~~-~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ 230 (840)
.+|-+.+++.|...+.- ..-+++---..-+.-|.+..+.+. ....+++.+++.++|....+++.+.+.+.++.+.+
T Consensus 344 ~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~---~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~i 420 (700)
T KOG2137|consen 344 NEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEE---VKEKILPLLYRSLEDSDVQIQELALQILPTVAESI 420 (700)
T ss_pred hhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHH---HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhc
Confidence 44555566666655542 122222111111222333334333 45589999999999999999999888887776553
Q ss_pred HHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhH
Q 003195 231 IRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQ 307 (840)
Q Consensus 231 ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~ 307 (840)
+...+-+.|+|-|-+-.+......+|..++.+++.+++.+... ..++++. .+++.....+|.
T Consensus 421 ------------D~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~--~v~d~~l-pi~~~~~~~dp~ 482 (700)
T KOG2137|consen 421 ------------DVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA--AVLDELL-PILKCIKTRDPA 482 (700)
T ss_pred ------------cHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH--HhHHHHH-HHHHHhcCCCcH
Confidence 2445667789987532234466789999999999999877653 2333333 334444444444
No 154
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.80 E-value=0.75 Score=50.80 Aligned_cols=88 Identities=8% Similarity=0.233 Sum_probs=64.5
Q ss_pred HHHHHhcCCChhhHHhhHHHHHHHHHhhh----------cCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhc
Q 003195 500 ELWEENTSGDRVTLQLYLGEIVSLICEGI----------ASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEV 569 (840)
Q Consensus 500 ~i~~~~~~~~~~~i~~yl~~Il~~l~~~L----------~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l 569 (840)
++...+..+..-.+.+|+-++++.++.|+ .+.+|.+|..||..++.++..++.......+.++..|.+.+
T Consensus 239 ~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l 318 (343)
T cd08050 239 RMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKAL 318 (343)
T ss_pred HHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHH
Confidence 33444555444467899999999999887 35789999999999999999998876556788888888888
Q ss_pred CCC--CchhHHHHHHHHHHH
Q 003195 570 PGR--LWEGKDALLYAIGSI 587 (840)
Q Consensus 570 ~~r--~~~~Ke~vl~aL~~l 587 (840)
.+. ....+-.++.+|..+
T Consensus 319 ~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 319 LDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred cCCCCCcchhhHHHHHHHHh
Confidence 654 343344445554444
No 155
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.79 E-value=5.8 Score=46.23 Aligned_cols=229 Identities=14% Similarity=0.128 Sum_probs=118.6
Q ss_pred hHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhccccc
Q 003195 516 YLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDI 595 (840)
Q Consensus 516 yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~ 595 (840)
..++-++..+..+.|.+..||.+|.+.|..+|+.-++ ++..+..+|.+-|...+......+=.+|.++...-..
T Consensus 56 l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~----~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k-- 129 (556)
T PF05918_consen 56 LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE----HVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK-- 129 (556)
T ss_dssp GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-----HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH----HHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--
Confidence 4455677777888999999999999999999986544 5678888888888877666777888888888764432
Q ss_pred ccCCCCchHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHcCCc------chHHhHHHHHHhhcccccccCCCCCCC
Q 003195 596 SAEDPTTPFAIVDMVSSACR---KKIKKYREAAFSCLEQVIKAFRDP------KFFNIIFPLLFEMCGSTALNKSGQVPL 666 (840)
Q Consensus 596 ~~~~~~~~~~i~~~l~~~~~---~~~~~~R~~Al~~L~~l~~~~~~~------~l~~~v~~i~~~l~~~~~~~~~~~~~~ 666 (840)
..+..+..++. ..+..+|+.++..+..-+..++.+ +....+...+.++-.+ +.
T Consensus 130 ---------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D-VT-------- 191 (556)
T PF05918_consen 130 ---------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD-VT-------- 191 (556)
T ss_dssp ---------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT-----------
T ss_pred ---------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh-cc--------
Confidence 23333444332 346789999999887766666553 2444444444444332 11
Q ss_pred CCCccchhhhccccCCchhHHHhhhhhhHHhhchhhHHHhhhhhHHHHHhhcCCCCChH---HHHH-HHHhhhcC----C
Q 003195 667 PSDASKEESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGFPWT---ELCS-RLQKTLDD----S 738 (840)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~-~~~~~l~~----~ 738 (840)
.+|+.. +..++.++- .++..+-..-...|++.|..-..-..+|. ..+. .|.+.++. .
T Consensus 192 ---------aeEF~l--~m~lL~~lk----~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~f 256 (556)
T PF05918_consen 192 ---------AEEFEL--FMSLLKSLK----IYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFF 256 (556)
T ss_dssp ---------HHHHHH--HHHHHHTSG----G---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-
T ss_pred ---------HHHHHH--HHHHHHhCc----cccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHh
Confidence 344422 234444432 22111111113467777763211233444 2222 23332221 1
Q ss_pred CCCCCccchhHHHHHHHhhhhhhhhhhcccchhhhhhHhhhHHHHHHHHHhhh
Q 003195 739 AGTSPHAGISSLIQELFHTVSPKVVECISTVKIAQVHISASECLLEICKLFRQ 791 (840)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~vr~~a~~~l~~i~~~~~~ 791 (840)
... ..-..+|.=+.+.++|.+-+ +. .+.|..-+-+++|+..+.+.
T Consensus 257 s~~---v~Sskfv~y~~~kvlP~l~~-l~----e~~kl~lLk~lAE~s~~~~~ 301 (556)
T PF05918_consen 257 SRG---VSSSKFVNYMCEKVLPKLSD-LP----EDRKLDLLKLLAELSPFCGA 301 (556)
T ss_dssp BTT---B--HHHHHHHHHHTCCCTT----------HHHHHHHHHHHHHTT---
T ss_pred cCC---CChHHHHHHHHHHhcCChhh-CC----hHHHHHHHHHHHHHcCCCCc
Confidence 111 12245555555566665532 32 56788888888888877654
No 156
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.77 E-value=0.39 Score=47.67 Aligned_cols=142 Identities=18% Similarity=0.197 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHH-----------H-HhhCCCChhHHHHHHHHHHHHHccCC--------
Q 003195 131 NVQDAMAHIWKSLVAD-PKRTIDEHLDLIFDDL-----------L-IQSGSRLWRSREASCLSLADIIQGRK-------- 189 (840)
Q Consensus 131 ~VR~a~~~iw~~Lv~d-~~~~i~~~~~~Il~~L-----------l-~~l~~~~wrvR~aac~Al~~Ll~~~~-------- 189 (840)
+||.++..+..+++.. +++.+-.|+..++|+- + -.+.|++.++|.+|+.++..+++|..
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4899999999999876 6677788888888876 1 12468899999999999999997531
Q ss_pred -------chhhhHHHHHHHH----HHHHHhccc-cHHHHHHHHHHHHHHHHHHHHhhhcccc-ccchHHhHHHhHHHHHH
Q 003195 190 -------FDQVGKHLRRIWT----AAFRAMDDI-KETVRTAGDKLCRSVTSLTIRLCDVTLT-EISDARQSMDIVLPFLL 256 (840)
Q Consensus 190 -------~~~l~~~L~~l~~----~l~~~ldD~-~~~VR~aA~~~~~~l~~~~ir~~~~~~~-~~~~~~~~l~~lLP~Ll 256 (840)
+..+..-+..++. .+...++.. +..+-.. +++.++-. +.. .|.+. ...-..+.+..+.|.+.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q---~lK~la~L-v~~-tPY~rL~~~ll~~~v~~v~~~l~ 155 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQ---LLKCLAVL-VQA-TPYHRLPPGLLTEVVTQVRPLLR 155 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHH---HHHHHHHH-Hcc-CChhhcCHhHHHHHHHHHHHHHh
Confidence 2223333333333 334444432 2223222 23333221 111 11110 11222344455555443
Q ss_pred hcccCCchhHHHHHHHHHHHHHHHhh
Q 003195 257 AEGILSKVDSISKASIGVVMKLVKGA 282 (840)
Q Consensus 257 ~~gL~s~~~evr~~al~~L~~la~~~ 282 (840)
+.+.++|..++.+++.+....
T Consensus 156 -----~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 156 -----HRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred -----cCCCcHHHHHHHHHHHHHcCC
Confidence 356688889999888887543
No 157
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=94.73 E-value=12 Score=44.32 Aligned_cols=439 Identities=11% Similarity=0.081 Sum_probs=210.3
Q ss_pred CCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhh-hcCCHHHHHHHHHHHH---Hh
Q 003195 371 GLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVL-KYATPSQAQKLIEETA---AL 446 (840)
Q Consensus 371 ~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~-~~~~~~~~~~li~~l~---~~ 446 (840)
....-..|+++++..++=..-.+-- -+.+++.+...+ + -..+|.+++.++-.++ +.+++-.--++++-+. +.
T Consensus 206 npgl~~~cLdc~g~fVSWIdInLIa-Nd~f~nLLy~fl-~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~l 281 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVSWIDINLIA-NDYFLNLLYKFL-N--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLEL 281 (980)
T ss_pred CchHHHHHHHHHHHHhhhhhhhhhh-chhHHHHHHHHH-h--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 3444556778877766543322211 456777777777 2 5789999988876655 4444433233444431 21
Q ss_pred h---c----CChhhhHHHHHHHHHHHh--------h--------chhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHH
Q 003195 447 H---I----DDKNSQISCAILLKSYSS--------V--------ASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWE 503 (840)
Q Consensus 447 ~---~----~d~~~r~~~~~~i~ai~~--------~--------~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~ 503 (840)
. . +|.+.-..++.++.+.+- - ..+.....++ .+|+++..+.+++++........|.
T Consensus 282 fg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~-~vpyllq~l~~e~ddit~~ifpFls 360 (980)
T KOG2021|consen 282 FGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLE-IVPYLLQFLNNEFDDITAKIFPFLS 360 (980)
T ss_pred HhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHH-HHHHHHHHhcccchhhHHHHHHHHH
Confidence 1 1 244444444444443321 1 0111122222 5677777777766666554444554
Q ss_pred HhcC------CChhhHHhhHHHHHHHHHhhhc-------CC----------CHHHHHHHHHHHHHHHHHhCcchhhhHHH
Q 003195 504 ENTS------GDRVTLQLYLGEIVSLICEGIA-------SS----------SWSSKRKSAKAICKLGEILGESLSNYHHV 560 (840)
Q Consensus 504 ~~~~------~~~~~i~~yl~~Il~~l~~~L~-------d~----------s~~vR~~Aa~~L~~La~~~~~~l~~~l~~ 560 (840)
+... ..+..-..++..|+..+.+-+. |. ..++|..-.-.+..++..-++-+..++.+
T Consensus 361 dyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~ 440 (980)
T KOG2021|consen 361 DYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQ 440 (980)
T ss_pred HHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4321 1222334555666555544331 11 13567665555555555444333323333
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccc--------------------------c-----------------
Q 003195 561 LLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDIS--------------------------A----------------- 597 (840)
Q Consensus 561 llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~--------------------------~----------------- 597 (840)
-+..-....+..+|..-|.++.-+-.+.++.+.... .
T Consensus 441 slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY 520 (980)
T KOG2021|consen 441 SLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRY 520 (980)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHH
Confidence 333333334556687777777777777766542110 0
Q ss_pred -----CCCCchHHHHHHHHH--HHhhcCHHHHHHHHHHHHHHHHHcCCcchHHhHHHHHHhhc---ccccc--cCCCCCC
Q 003195 598 -----EDPTTPFAIVDMVSS--ACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMC---GSTAL--NKSGQVP 665 (840)
Q Consensus 598 -----~~~~~~~~i~~~l~~--~~~~~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~~l~---~~~~~--~~~~~~~ 665 (840)
+.+.+.|.++.+.+. .+..++..+|..|-..+.++++.++. .+...+-.++..+. ...++ |+|++.+
T Consensus 521 ~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkk-qlvpfie~iln~iqdlL~~~vtt~N~~s~~l 599 (980)
T KOG2021|consen 521 NKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKK-QLVPFIEEILNKIQDLLHIKVTTINAQSDNL 599 (980)
T ss_pred HHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCcCCCcCcccccc
Confidence 011244555555543 56667889999999999999998865 33333333333332 22333 3455555
Q ss_pred CCCCccchhhhccccCCchhHHHhhhhh---hHHhh--chhhHHHhhhhhHHHHHhhcCCCCChHHHHHHHH------hh
Q 003195 666 LPSDASKEESADESVSAPLDKVLDCVSS---CIHVA--HVNDIIEQEKNLVQLFTISLSPGFPWTELCSRLQ------KT 734 (840)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------~~ 734 (840)
..+|+ +---++..-+.-.++...+ +-... -.|.+.++...++..-+++ +++.-.++..... .+
T Consensus 600 t~fdd----qlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~las--de~~pv~Ia~c~~~lmaig~l 673 (980)
T KOG2021|consen 600 TIFDD----QLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLAS--DEASPVVIAECHHILMAIGTL 673 (980)
T ss_pred ccccc----cceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhc--cccccHHHHHHHHHHHHHHHH
Confidence 44444 1001111000000000000 00000 1122222222233333332 3444444444222 22
Q ss_pred hcCCCCC---CCccchhHHHHHHHhhhhhhhhhhcccchhhhhhHhhhHHHHHHHHHhhh--cccccccccchhhhhHHH
Q 003195 735 LDDSAGT---SPHAGISSLIQELFHTVSPKVVECISTVKIAQVHISASECLLEICKLFRQ--ISSVYSSNIGIKGELVHQ 809 (840)
Q Consensus 735 l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~vr~~a~~~l~~i~~~~~~--~~~~~~~~~~~~~~~~~~ 809 (840)
-|+.|.. ....+-...|.++...+.+.+-. .-|-...|.+-=...+.++--+|. .|| .+...+-++.-
T Consensus 674 akgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~---f~k~E~iRsavrft~hRmI~~lg~~vlPf----ipklie~lL~s 746 (980)
T KOG2021|consen 674 AKGFHIRLVTENQVGNMVVFSNILDVILVTLSF---FNKFENIRSAVRFTFHRMIPILGNKVLPF----IPKLIELLLSS 746 (980)
T ss_pred hhcccccCcchhcccHHHHHHHHHHHHHHHHhh---ccccchhHHHHHHHHHHHHHhcchhhhcc----hHHHHHHHHhc
Confidence 2233322 12244444466666666555532 334456888888889999988865 899 44455555555
Q ss_pred HHhhhhHhHHHHHHHHHHH
Q 003195 810 CEMEKNMEAKSLLKKCIDI 828 (840)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~ 828 (840)
+|...--+--.+|.+-+..
T Consensus 747 ~d~kEmvdfl~flsQLihk 765 (980)
T KOG2021|consen 747 TDLKEMVDFLGFLSQLIHK 765 (980)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 5544333333444444333
No 158
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.73 E-value=7.6 Score=42.04 Aligned_cols=165 Identities=11% Similarity=0.033 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhccCcccc--HHHHHHHHH-HhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc-CChhh
Q 003195 378 VASFISLLVQKIGMDIKPY--TSMLLRLLF-PVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNS 453 (840)
Q Consensus 378 a~~~l~~L~~~~~~~~~p~--~~~lL~~Ll-~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~-~d~~~ 453 (840)
|+.++..+..+....+.|. ...+++.++ +++ ...+..||+.+..++|-.+-... +....++.-+...+. +++..
T Consensus 3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v-~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~~~~~v 80 (298)
T PF12719_consen 3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAV-QSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQKDDEEV 80 (298)
T ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHhCCHHH
Confidence 4555666666666666664 347776655 888 66778999999999998875544 334444555554443 46778
Q ss_pred hHHHHHHHHHHHhhchhh-hhhhH--------hhHhHHHHHhhcCCchHHHHHHHHHHHH-hcCCChhhHHhhHHHHHHH
Q 003195 454 QISCAILLKSYSSVASDV-LSGYH--------AVIVPVIFISRFEDDKYVSDLFEELWEE-NTSGDRVTLQLYLGEIVSL 523 (840)
Q Consensus 454 r~~~~~~i~ai~~~~~~~-f~~~~--------~~llP~l~~~~~d~d~~vr~~~~~i~~~-~~~~~~~~i~~yl~~Il~~ 523 (840)
|..+..++..+.-..|.. |.... ..++.++.....+++++++....+-+.. +..+. +.. .++++..
T Consensus 81 ~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~---i~~-~~~vL~~ 156 (298)
T PF12719_consen 81 KITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR---ISD-PPKVLSR 156 (298)
T ss_pred HHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC---CCc-HHHHHHH
Confidence 888888888887666533 22222 2355555555566677888765443333 22221 101 1333333
Q ss_pred HHhhh----cCCCHHHHHHHHHHHHHHHH
Q 003195 524 ICEGI----ASSSWSSKRKSAKAICKLGE 548 (840)
Q Consensus 524 l~~~L----~d~s~~vR~~Aa~~L~~La~ 548 (840)
+.-.. ...+.++|+.=..++...+.
T Consensus 157 Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~ 185 (298)
T PF12719_consen 157 LLLLYFNPSTEDNQRLRQCLSVFFPVYAS 185 (298)
T ss_pred HHHHHcCcccCCcHHHHHHHHHHHHHHHc
Confidence 32222 23345777765555555554
No 159
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.96 Score=51.20 Aligned_cols=168 Identities=14% Similarity=0.153 Sum_probs=97.7
Q ss_pred ccCcccccCCcccccCCCCccchHHHHHHHhhhcCC------------------chHHHHHHHHhccccchhhhhhHHhH
Q 003195 37 AEDSEVFQEGAIGEGLGGGKLSTYKELCNLANEMGQ------------------PDLIYKFMDLANYQVSLNSKRGAAFG 98 (840)
Q Consensus 37 ~~~t~~f~~g~~~~~~~~~~~styk~l~~lA~~~g~------------------p~lv~~fm~la~~~~~w~sr~gA~~~ 98 (840)
.++...++-|.++- +.++..+..++...|.+-.- .++.+.+..-...+.+---|-+.+|+
T Consensus 462 ~geAa~~gMGl~mL--gt~s~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygrqe~add~I~ell~d~ds~lRy~G~fs 539 (926)
T COG5116 462 LGEAAVYGMGLLML--GTWSVEAIEDMRTYAGETQHERIKRGLGIGFALILYGRQEMADDYINELLYDKDSILRYNGVFS 539 (926)
T ss_pred hhhhhhhccceeee--cCCCHHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhhHHHHHHHHHHHhcCchHHhhhccHHH
Confidence 34445577776653 34566676676666655322 22222222211111122334455566
Q ss_pred HHHHHHHhhhhhchhhhhHHHHHHhh-cCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHH
Q 003195 99 FSKIAKQAGDALKPHLRLLIPKLVRF-QYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREAS 177 (840)
Q Consensus 99 l~~I~~~~~~~l~~~l~~lvP~L~~~-~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aa 177 (840)
++..+-|.+. ..++..|+.| ..|.|..||||+.=.++-+.-+.++.+ ..+++-|. .+-++.||.++
T Consensus 540 ~alAy~GTgn------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~l----v~tvelLs---~shN~hVR~g~ 606 (926)
T COG5116 540 LALAYVGTGN------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDLL----VGTVELLS---ESHNFHVRAGV 606 (926)
T ss_pred HHHHHhcCCc------chhHhhhheeecccCchHHHHHHHHheeeeEecCcchh----hHHHHHhh---hccchhhhhhh
Confidence 5555544432 1467777777 799999999999777766553332222 22222222 35678999999
Q ss_pred HHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 003195 178 CLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSV 226 (840)
Q Consensus 178 c~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l 226 (840)
+.||+-.+.+.....-.+ ++ -+++.|...-||.+|..+..-+
T Consensus 607 AvaLGiacag~G~~~a~d----iL---~~L~~D~~dfVRQ~AmIa~~mI 648 (926)
T COG5116 607 AVALGIACAGTGDKVATD----IL---EALMYDTNDFVRQSAMIAVGMI 648 (926)
T ss_pred HHHhhhhhcCCccHHHHH----HH---HHHhhCcHHHHHHHHHHHHHHH
Confidence 999998888766433222 22 2338899999999986655443
No 160
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.65 E-value=0.098 Score=57.76 Aligned_cols=102 Identities=21% Similarity=0.300 Sum_probs=73.4
Q ss_pred chhhhhHHHHHHhhcCCC-------CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh----------CCCChhH
Q 003195 111 KPHLRLLIPKLVRFQYDP-------DKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQS----------GSRLWRS 173 (840)
Q Consensus 111 ~~~l~~lvP~L~~~~~Dp-------~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l----------~~~~wrv 173 (840)
+|-+.+|+|.+.+|..+. |-.+-..+.....+|..|+.-.++.|+..++|.++.++ .+..|..
T Consensus 205 D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~L 284 (343)
T cd08050 205 DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWAL 284 (343)
T ss_pred CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHH
Confidence 356677788777776654 34444456778888999988889999999999999876 3456999
Q ss_pred HHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccH
Q 003195 174 REASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKE 213 (840)
Q Consensus 174 R~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~ 213 (840)
|+-|+..++.++...+. .+....+.|...+.+++-|.+.
T Consensus 285 Rd~AA~ll~~i~~~f~~-~y~~l~~ri~~tl~k~l~d~~~ 323 (343)
T cd08050 285 RDYAARLLAQICRKFST-SYNTLQPRITRTLLKALLDPKK 323 (343)
T ss_pred HHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHcCCCC
Confidence 99999999999875432 2333445666666666666543
No 161
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=94.64 E-value=8.7 Score=45.03 Aligned_cols=92 Identities=16% Similarity=0.197 Sum_probs=65.1
Q ss_pred HHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHh-ccCccccHHHHHHHHHHhHhhcCcHHHHHHHH
Q 003195 343 LDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKI-GMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFA 421 (840)
Q Consensus 343 l~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~-~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~ 421 (840)
++.+++..+.+.+.+++-.+...++.......|.+.+++++.+..-. +.+.++..-.-+..++..+..|+|..+...+.
T Consensus 465 ~~~~~~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~AL 544 (559)
T PF14868_consen 465 LSFFIQLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHAL 544 (559)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHH
Confidence 44456667777788888888888876655568888999987665422 23333333344455666666899999999999
Q ss_pred HHHHHhhhcCCHH
Q 003195 422 SACASVLKYATPS 434 (840)
Q Consensus 422 ~Alg~l~~~~~~~ 434 (840)
.|+++..+..+.+
T Consensus 545 eAF~~FAe~T~~e 557 (559)
T PF14868_consen 545 EAFGQFAERTSHE 557 (559)
T ss_pred HHHHHHhccCCcc
Confidence 9999998776543
No 162
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.62 E-value=3.7 Score=44.13 Aligned_cols=150 Identities=13% Similarity=0.121 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchh---hhHH--HHHHHHHHHHHhc--------cccHH
Q 003195 148 KRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQ---VGKH--LRRIWTAAFRAMD--------DIKET 214 (840)
Q Consensus 148 ~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~---l~~~--L~~l~~~l~~~ld--------D~~~~ 214 (840)
...+++|++-++|.++.-++|.+..+|.-+|..+..+++..+... +..+ ..-+...++.++- |....
T Consensus 110 ~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~ 189 (282)
T PF10521_consen 110 RPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLE 189 (282)
T ss_pred cchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHH
Confidence 356899999999999999999999999999999999998765544 3321 2222333333332 33334
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccchHH---hHHHh-HHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccch
Q 003195 215 VRTAGDKLCRSVTSLTIRLCDVTLTEISDAR---QSMDI-VLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHL 290 (840)
Q Consensus 215 VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~---~~l~~-lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~l 290 (840)
+=.+|..++..+.+.. . ..++..... +.+.. ++..+... ...+..+++.+.++.+..+++..|.....|+
T Consensus 190 Ll~~ay~~L~~L~~~~----~-~~~~~~r~~~l~~~l~e~IL~~~~~~-~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL 263 (282)
T PF10521_consen 190 LLQAAYPALLSLLKTQ----E-NDDSNPRSTWLDKILREGILSSMEHE-SSFSYPRLRTVLLQQLPPIIDELGISSVKHL 263 (282)
T ss_pred HHHHHHHHHHHHHHhh----c-cCCcccchHHHHHHHHHHHhhhceec-cccCchhHHHHHHHHHHHHHHHhccHHHHHH
Confidence 4445555555553322 1 111111111 22222 33332211 1123578999999999999999999999999
Q ss_pred HHHHHHHHHhccC
Q 003195 291 SDLVSCMLESLSS 303 (840)
Q Consensus 291 p~Lv~~Ll~~ls~ 303 (840)
..++|.+.+.+.+
T Consensus 264 ~rii~~l~~~l~n 276 (282)
T PF10521_consen 264 QRIIPVLSQILEN 276 (282)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998774
No 163
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=13 Score=44.07 Aligned_cols=345 Identities=12% Similarity=0.149 Sum_probs=172.8
Q ss_pred hhhchhhhhHHHHHHhhcC-CCC-HhHHHH--HHHHHHH---hccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q 003195 108 DALKPHLRLLIPKLVRFQY-DPD-KNVQDA--MAHIWKS---LVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLS 180 (840)
Q Consensus 108 ~~l~~~l~~lvP~L~~~~~-Dp~-~~VR~a--~~~iw~~---Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~A 180 (840)
+.+.+-|.-++.-|=++-- ++| .+.|++ +.++... +++.++......-+-|++.++....++---.|.-||.-
T Consensus 404 ~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~ 483 (970)
T COG5656 404 ETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEF 483 (970)
T ss_pred hhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHH
Confidence 3577776666666644433 334 344443 3333322 22222222221122355556666677665667778887
Q ss_pred HHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhccc
Q 003195 181 LADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGI 260 (840)
Q Consensus 181 l~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL 260 (840)
+..+-+. ++ ....+.++......+|.+.+-.||-.|+-++..+. +.-..+ ....+.++..+.-|+. |
T Consensus 484 is~~eeD--fk-d~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi----~~~q~h----~k~sahVp~tmekLLs--L 550 (970)
T COG5656 484 ISTIEED--FK-DNGILLEAYENTHNCLKNNHLPVMIEAALALQFFI----FNEQSH----EKFSAHVPETMEKLLS--L 550 (970)
T ss_pred HHHHHHh--cc-cchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHH----hchhhh----HHHHhhhhHHHHHHHH--h
Confidence 7666222 11 33456678888888899988889988877777663 221100 1122333333443331 3
Q ss_pred CCch-hHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcH
Q 003195 261 LSKV-DSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPM 339 (840)
Q Consensus 261 ~s~~-~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l 339 (840)
.+.- -++= -.++-.++......+.||.|+++..|.+.+- .....+.++.+......|++..++. .+
T Consensus 551 Sn~feiD~L---S~vMe~fVe~fseELspfa~eLa~~Lv~qFl-------kiaq~l~ens~d~~s~vDDKqmaas---Gi 617 (970)
T COG5656 551 SNTFEIDPL---SMVMESFVEYFSEELSPFAPELAGSLVRQFL-------KIAQSLLENSSDTSSVVDDKQMAAS---GI 617 (970)
T ss_pred cccccchHH---HHHHHHHHHHhHHhhchhHHHHHHHHHHHHH-------HHHHHHHcCCccccccccHHHHHHH---HH
Confidence 3221 1111 1334456777889999999999988877332 1111111211111111222222211 12
Q ss_pred HHHHHHHHhhcCh--hhHh----hHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCc
Q 003195 340 WDTLDLCINVVDT--ESLD----QLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKS 413 (840)
Q Consensus 340 ~eal~~~~~~~d~--~~l~----~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~ 413 (840)
..+++..+-.++. .+++ .+.|.+.=.+++.. ...=.+|++++-..+ -...++.|-.-.+.+.+.+.+ .+..
T Consensus 618 L~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i-~dfy~Ea~dildg~t-f~skeI~pimwgi~Ell~~~l-~~~~ 694 (970)
T COG5656 618 LRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEI-SDFYQEALDILDGYT-FMSKEIEPIMWGIFELLLNLL-IDEI 694 (970)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHhhhh-HHHHHhhhhhhHHHHHHHhcc-cccc
Confidence 3334433333332 1222 24454444444331 112236666664432 222455677777788877777 3333
Q ss_pred -HHHHHHHHHHHHHhhhcCCHHH-----HHHHHHHHHHh-hc-CCh--hhhHHHHHHHHHHHhhchh-hhhhhHhhHhH
Q 003195 414 -AAAKRAFASACASVLKYATPSQ-----AQKLIEETAAL-HI-DDK--NSQISCAILLKSYSSVASD-VLSGYHAVIVP 481 (840)
Q Consensus 414 -~~Vr~~a~~Alg~l~~~~~~~~-----~~~li~~l~~~-~~-~d~--~~r~~~~~~i~ai~~~~~~-~f~~~~~~llP 481 (840)
..-..+++.++..++...+.+. ..+.+-.+... +. ++. +.+..++.++..+.-..++ ....|.+.++.
T Consensus 695 t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~ 773 (970)
T COG5656 695 TAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFIS 773 (970)
T ss_pred hhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHH
Confidence 2334778888888887664332 22233333222 22 222 4577888888888777665 33444443333
No 164
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.65 Score=54.17 Aligned_cols=95 Identities=16% Similarity=0.043 Sum_probs=61.8
Q ss_pred hHHHHHHhh-cCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhh
Q 003195 116 LLIPKLVRF-QYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVG 194 (840)
Q Consensus 116 ~lvP~L~~~-~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~ 194 (840)
+.|.+|+.+ -.|+|..|||++.-.++-+.-+.+.+ .+.++.-|- .+-++.||.+++.||+-.+.|.....-.
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~----~~s~V~lLs---es~N~HVRyGaA~ALGIaCAGtG~~eAi 626 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ----LPSTVSLLS---ESYNPHVRYGAAMALGIACAGTGLKEAI 626 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEecChhh----chHHHHHHh---hhcChhhhhhHHHHHhhhhcCCCcHHHH
Confidence 455566555 67999999999887777655433232 233333232 2456899999999999988876643322
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 003195 195 KHLRRIWTAAFRAMDDIKETVRTAGDKLCR 224 (840)
Q Consensus 195 ~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~ 224 (840)
..| -..+.|...-||..|.-+..
T Consensus 627 ~lL-------epl~~D~~~fVRQgAlIa~a 649 (929)
T KOG2062|consen 627 NLL-------EPLTSDPVDFVRQGALIALA 649 (929)
T ss_pred HHH-------hhhhcChHHHHHHHHHHHHH
Confidence 222 22367999999998855443
No 165
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.55 E-value=0.4 Score=46.81 Aligned_cols=152 Identities=13% Similarity=0.132 Sum_probs=93.3
Q ss_pred cccc--HHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHhhchh
Q 003195 393 IKPY--TSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASD 470 (840)
Q Consensus 393 ~~p~--~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~~ 470 (840)
+.|| .+.+++.|+..+.++++..+|+++.+.+|.+...-+...- ......+
T Consensus 2 v~PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k---------~~~~~~~------------------ 54 (160)
T PF11865_consen 2 VDPYLDYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK---------SIQKSLD------------------ 54 (160)
T ss_pred cchHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh---------cccccCC------------------
Confidence 3577 4589999999998788899999999999877644332210 0000000
Q ss_pred hhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHHhhhcCCCHHH-HHHHHHHHHHHHH
Q 003195 471 VLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYL-GEIVSLICEGIASSSWSS-KRKSAKAICKLGE 548 (840)
Q Consensus 471 ~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl-~~Il~~l~~~L~d~s~~v-R~~Aa~~L~~La~ 548 (840)
. ....+......... ..+....+ ....|. .-.+..+.+.++|++-.. +..+..++-.+.+
T Consensus 55 ----------~---~~~~~~~~~~~~~~-l~~~~~~~----~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~ 116 (160)
T PF11865_consen 55 ----------S---KSSENSNDESTDIS-LPMMGISP----SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFK 116 (160)
T ss_pred ----------c---cccccccccchhhH-HhhccCCC----chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 0 00000001111100 11111111 112233 334666777778876544 4456688888888
Q ss_pred HhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHH
Q 003195 549 ILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSIST 589 (840)
Q Consensus 549 ~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~ 589 (840)
..|..-.+|+++++|.+++.++..+...+|..+..|+.++.
T Consensus 117 ~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 117 SLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred hcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 88877789999999999999987666889999999888764
No 166
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.47 E-value=0.5 Score=55.07 Aligned_cols=196 Identities=12% Similarity=0.101 Sum_probs=122.1
Q ss_pred HHhhcChhh-HhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHH
Q 003195 346 CINVVDTES-LDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASAC 424 (840)
Q Consensus 346 ~~~~~d~~~-l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Al 424 (840)
+...+|.+. -..++|.|+++++.. +..+|.--++-+..++..+.... +.+++++.+..++ .|.|+.+|+....++
T Consensus 318 ~~k~ld~~eyq~~i~p~l~kLF~~~-Dr~iR~~LL~~i~~~i~~Lt~~~--~~d~I~phv~~G~-~DTn~~Lre~Tlksm 393 (690)
T KOG1243|consen 318 LGKDLDEEEYQVRIIPVLLKLFKSP-DRQIRLLLLQYIEKYIDHLTKQI--LNDQIFPHVALGF-LDTNATLREQTLKSM 393 (690)
T ss_pred hhhhccccccccchhhhHHHHhcCc-chHHHHHHHHhHHHHhhhcCHHh--hcchhHHHHHhhc-ccCCHHHHHHHHHHH
Confidence 333444332 356889999998765 66677766777666666555444 6779999999999 799999999999999
Q ss_pred HHhhhcCCHHHH-HHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHH-hhcCCchHHHHHHHHH
Q 003195 425 ASVLKYATPSQA-QKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFI-SRFEDDKYVSDLFEEL 501 (840)
Q Consensus 425 g~l~~~~~~~~~-~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~-~~~d~d~~vr~~~~~i 501 (840)
..++...+...+ ..++.++...-. ++...|.-...+++.++.+....- .+.+++.-|. ++.|+-..-|.. .+
T Consensus 394 ~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a--~v 468 (690)
T KOG1243|consen 394 AVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKA--GV 468 (690)
T ss_pred HHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhh--hh
Confidence 999888777744 344444443332 233457666677788776643211 3334443333 344443333433 22
Q ss_pred HHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHh
Q 003195 502 WEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEIL 550 (840)
Q Consensus 502 ~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~ 550 (840)
|.-......-........|++.+.-..-|++..+|..|.+++...-.+.
T Consensus 469 ~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 469 LALAATQEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred HHHhhcccccchhhhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 2211111101123345567777777788999999999999887655443
No 167
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=94.46 E-value=24 Score=47.13 Aligned_cols=267 Identities=10% Similarity=0.063 Sum_probs=150.2
Q ss_pred hhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhc-CC--
Q 003195 356 DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKY-AT-- 432 (840)
Q Consensus 356 ~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~-~~-- 432 (840)
++++-.+...+++.....+|...++++.+++...+..++.=...++..+-... .+++..+-+.+...+..++.- .+
T Consensus 1181 kefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa-~d~~e~iV~lAFetl~~I~~d~f~~l 1259 (1780)
T PLN03076 1181 NEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAA-YDDHKNIVLLAFEIIEKIIREYFPYI 1259 (1780)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHhhhhhc
Confidence 45777777778777777889999999999999998888888888898888887 677777766666666655421 11
Q ss_pred ----HHHHHHHHHHHHHhhcC--ChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHH-------HHHHH
Q 003195 433 ----PSQAQKLIEETAALHID--DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYV-------SDLFE 499 (840)
Q Consensus 433 ----~~~~~~li~~l~~~~~~--d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~v-------r~~~~ 499 (840)
.+.+..++.-+.+.-.. +.+.-..+...+..++....+ ...... ...+ +.+. .....
T Consensus 1260 ~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~---~~~~~~------~~~~-~~~~~~~~s~~~~~~~ 1329 (1780)
T PLN03076 1260 TETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAE---GDLGSS------SRNK-DKEAPPSSPQSGKDGK 1329 (1780)
T ss_pred cccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHh---cccccc------cccc-cccccccccccccccc
Confidence 12333333322222111 111112222222222111100 000000 0000 0000 00000
Q ss_pred HHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhh-h----HH-HHHHHHHHhcCC--
Q 003195 500 ELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSN-Y----HH-VLLESIMKEVPG-- 571 (840)
Q Consensus 500 ~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~-~----l~-~llp~L~~~l~~-- 571 (840)
+--..+.. .......++ .++..+.+...|...+||..|...|=++...+|..|.+ + +. .|+|.+ ..++.
T Consensus 1330 ~~~~~~~~-~~~~~~lW~-pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIF-d~l~~~~ 1406 (1780)
T PLN03076 1330 QESGEFTD-KDDHLYFWF-PLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIF-DYVRHAI 1406 (1780)
T ss_pred cccccccc-chhHHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 00000000 001112222 34445555667899999999999999999999998886 2 33 344443 22210
Q ss_pred ----------------------CCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 003195 572 ----------------------RLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCL 629 (840)
Q Consensus 572 ----------------------r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L 629 (840)
..|. ++....||..++.-+..++.. ..+.++.++..+...++..|...-+.+..||
T Consensus 1407 ~~~~~~~~~~~~~~~~~~~~e~~~Wl-~eT~~~AL~~lvdLft~fFd~-L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l 1484 (1780)
T PLN03076 1407 DPSGGDEPEGQGVDGDQGELDQDAWL-YETCTLALQLVVDLFVKFYPT-VNPLLKKVLMLLVSFIKRPHQSLAGIGIAAF 1484 (1780)
T ss_pred ccccccccccccccccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 1232 566666666666555544321 1246777888888888888999999999999
Q ss_pred HHHHHHcCC
Q 003195 630 EQVIKAFRD 638 (840)
Q Consensus 630 ~~l~~~~~~ 638 (840)
..|+...+.
T Consensus 1485 ~~li~~ng~ 1493 (1780)
T PLN03076 1485 VRLMSNAGH 1493 (1780)
T ss_pred HHHHHHhhc
Confidence 999987644
No 168
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.32 E-value=21 Score=45.30 Aligned_cols=293 Identities=13% Similarity=0.111 Sum_probs=152.5
Q ss_pred hHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhh
Q 003195 246 QSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEK 325 (840)
Q Consensus 246 ~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~ 325 (840)
+....++|.+.-.-..++.-|+|...++++..+.+++|.-+-.-.+.++..+-.+.... ++-.
T Consensus 837 es~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~-----------------~eke 899 (1610)
T KOG1848|consen 837 ESLGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFG-----------------SEKE 899 (1610)
T ss_pred hhhHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhcc-----------------chhh
Confidence 34555666553222344566899999999999999999765444565555554222111 0011
Q ss_pred hHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHH---HHH----hccCcc----
Q 003195 326 LENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLL---VQK----IGMDIK---- 394 (840)
Q Consensus 326 ~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L---~~~----~~~~~~---- 394 (840)
.+-+|.... -+-=...++++.++.+++..++..+....+...+.+.-..|...++.+ ..+ .|.+..
T Consensus 900 k~ivrlgf~---~lrlIssDfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~ 976 (1610)
T KOG1848|consen 900 KKIVRLGFS---CLRLISSDFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNS 976 (1610)
T ss_pred hhHHHhhhh---hhhhhhhcchhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcc
Confidence 111121100 000012344555555556666666666555555666555555544443 222 111111
Q ss_pred --------cc----HHH----HHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCC--------HHHHHHHHHHHHHhh---
Q 003195 395 --------PY----TSM----LLRLLFPVVKEEKSAAAKRAFASACASVLKYAT--------PSQAQKLIEETAALH--- 447 (840)
Q Consensus 395 --------p~----~~~----lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~--------~~~~~~li~~l~~~~--- 447 (840)
|+ .+. ++..+.... .|..++||+.|++.+=+++..-+ +..+-.++.++.+..
T Consensus 977 ~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~-~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q 1055 (1610)
T KOG1848|consen 977 VEDLYSSMKSKEILPEVLWIMLLVHLADLC-EDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQ 1055 (1610)
T ss_pred hhhhcccccchhhhhhHHHHHHHHHHHHHh-ccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhcccccc
Confidence 00 122 333333333 67779999999998866664322 123456666666522
Q ss_pred -----cC--C-hhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHH
Q 003195 448 -----ID--D-KNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGE 519 (840)
Q Consensus 448 -----~~--d-~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~ 519 (840)
.+ . +++..+++..+++|++..++ +++.++.+ .-|.++|++
T Consensus 1056 ~~~ewngkeiqkqwtet~~ltisgIaklf~e----~fk~llnl-------------n~f~~vwe~--------------- 1103 (1610)
T KOG1848|consen 1056 NVSEWNGKEIQKQWTETSCLTISGIAKLFSE----NFKLLLNL-------------NGFLDVWEE--------------- 1103 (1610)
T ss_pred chhhhcchhHhhhhhhhhhhhHHHHHHHHHH----HHHHHHhc-------------ccHHHHHHH---------------
Confidence 11 1 34567888888998765444 33322211 113355654
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHHHH---hCc---chhhh-------HHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 003195 520 IVSLICEGIASSSWSSKRKSAKAICKLGEI---LGE---SLSNY-------HHVLLESIMKEVPGRLWEGKDALLYAIGS 586 (840)
Q Consensus 520 Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~---~~~---~l~~~-------l~~llp~L~~~l~~r~~~~Ke~vl~aL~~ 586 (840)
+++.+.+.+.+.+.++.-+|.+++..+... .|. .+..+ +..+.+.+-++-..+.|+++.+++..|+.
T Consensus 1104 ll~flkrl~s~~s~e~slsai~~~qell~sii~~~~ln~~~~~k~n~vf~~y~~~~~~~ssas~~t~~kv~~eiltgl~~ 1183 (1610)
T KOG1848|consen 1104 LLQFLKRLHSDISPEISLSAIKALQELLFSIIEFGKLNATFTLKINLVFINYGRFCEVSSSASERTLAKVSQEILTGLIE 1183 (1610)
T ss_pred HHHHHHHHHhcCChHhHHHHHHHHHHHHHHHhhhccccchHHHHhhhhhhhHhhhcccccccchhHHHHHHHHHHhhhHH
Confidence 445555666777777887777777776642 222 11111 22233333332223457778888887776
Q ss_pred HHHhc
Q 003195 587 ISTSC 591 (840)
Q Consensus 587 l~~~~ 591 (840)
.....
T Consensus 1184 ~vqs~ 1188 (1610)
T KOG1848|consen 1184 SVQSL 1188 (1610)
T ss_pred HHHHH
Confidence 55443
No 169
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.27 E-value=7 Score=42.34 Aligned_cols=131 Identities=14% Similarity=0.074 Sum_probs=95.8
Q ss_pred CchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhc
Q 003195 490 DDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEV 569 (840)
Q Consensus 490 ~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l 569 (840)
..-.||..+.++++.+.-..+..+++.++.++-.++-++.|.+.+........+..+....|... |+..+|-.++.
T Consensus 109 asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~--F~~~lwl~ii~-- 184 (307)
T PF04118_consen 109 ASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKY--FWQCLWLCIIT-- 184 (307)
T ss_pred HHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhH--HHHHHHHHHhc--
Confidence 34568888888888876555568999999999999999999999999999999999999988763 67888887774
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccc------cc-----CCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 003195 570 PGRLWEGKDALLYAIGSISTSCHKDI------SA-----EDPTTPFAIVDMVSSACRKKIKKYREAAFSCLE 630 (840)
Q Consensus 570 ~~r~~~~Ke~vl~aL~~l~~~~~~~~------~~-----~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~ 630 (840)
+...|. -|+.-+........ .. -..+-..-+++++...+.+++.-+++.++..|-
T Consensus 185 ---sp~~Rl---~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl 250 (307)
T PF04118_consen 185 ---SPSRRL---GALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLL 250 (307)
T ss_pred ---CcchhH---HHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 344453 34444444333221 00 012345678888889998999999998877653
No 170
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.26 E-value=2.8 Score=47.76 Aligned_cols=86 Identities=9% Similarity=0.206 Sum_probs=65.3
Q ss_pred HhcCCChhhHHhhHHHHHHHHHhhh----------cCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCC-
Q 003195 504 ENTSGDRVTLQLYLGEIVSLICEGI----------ASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGR- 572 (840)
Q Consensus 504 ~~~~~~~~~i~~yl~~Il~~l~~~L----------~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r- 572 (840)
.+..+..-.+.+|+-+++|.++.|+ .|.+|.+|--||..+..+++..+.......+.|+..+.+.+.+.
T Consensus 273 SLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~ 352 (576)
T KOG2549|consen 273 SLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNK 352 (576)
T ss_pred HHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCC
Confidence 3444433457899999999998887 46799999999999999999988766656788889999999764
Q ss_pred -CchhHHHHHHHHHHHHH
Q 003195 573 -LWEGKDALLYAIGSIST 589 (840)
Q Consensus 573 -~~~~Ke~vl~aL~~l~~ 589 (840)
.|.-.-.++..|.+|..
T Consensus 353 ~~~st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 353 KPLSTHYGAIAGLSELGH 370 (576)
T ss_pred CCchhhhhHHHHHHHhhh
Confidence 56655555666555543
No 171
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=6.6 Score=41.88 Aligned_cols=287 Identities=12% Similarity=0.157 Sum_probs=148.1
Q ss_pred HHHHHHHhhcCh-hhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcc-Cccc----cHHHHHHHHHHhHhhcCcH
Q 003195 341 DTLDLCINVVDT-ESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGM-DIKP----YTSMLLRLLFPVVKEEKSA 414 (840)
Q Consensus 341 eal~~~~~~~d~-~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~-~~~p----~~~~lL~~Ll~~l~~d~~~ 414 (840)
..++.+.+.... ...+.++|.|..++..+ +..+|.-+|+.++.+...+.. .+.. .-..+++.++..+ -..+.
T Consensus 65 scLERLfkakegahlapnlmpdLQrGLiad-dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcI-ggedd 142 (524)
T KOG4413|consen 65 SCLERLFKAKEGAHLAPNLMPDLQRGLIAD-DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCI-GGEDD 142 (524)
T ss_pred HHHHHHHhhccchhhchhhhHHHHhcccCC-cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHH-cCCcH
Confidence 445666555433 34578999998888766 667888888888777766541 2221 1346788888888 56789
Q ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHH-----HHH--HHhhc-CChhhhHHHHHHHHHHHhhchhhhhhhHhh-HhHHHHH
Q 003195 415 AAKRAFASACASVLKYATPSQAQKLI-----EET--AALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAV-IVPVIFI 485 (840)
Q Consensus 415 ~Vr~~a~~Alg~l~~~~~~~~~~~li-----~~l--~~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~-llP~l~~ 485 (840)
+|.++++..+.++..+- +.+..+. +++ .++-. -++-.|.-+-.+|-.+...++.....+-+. ++-++..
T Consensus 143 eVAkAAiesikrialfp--aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLea 220 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALFP--AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEA 220 (524)
T ss_pred HHHHHHHHHHHHHHhcH--HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHH
Confidence 99999999998886532 1121111 111 00000 122334445566666666555544332221 4444443
Q ss_pred hhcC-CchHHHHHHHHHHHHhcCCChhhHHhhHH--HHHHHHHhhh----cCCCHHHHHH--HHHHHHHHHH--HhCcch
Q 003195 486 SRFE-DDKYVSDLFEELWEENTSGDRVTLQLYLG--EIVSLICEGI----ASSSWSSKRK--SAKAICKLGE--ILGESL 554 (840)
Q Consensus 486 ~~~d-~d~~vr~~~~~i~~~~~~~~~~~i~~yl~--~Il~~l~~~L----~d~s~~vR~~--Aa~~L~~La~--~~~~~l 554 (840)
.+.. +|--|+..+.+++.++... ..-+.|++ .+++.++..+ +|+-.+.|.. ..+.+|..+- +.++.+
T Consensus 221 ElkGteDtLVianciElvteLaet--eHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeai 298 (524)
T KOG4413|consen 221 ELKGTEDTLVIANCIELVTELAET--EHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAI 298 (524)
T ss_pred HhcCCcceeehhhHHHHHHHHHHH--hhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHH
Confidence 3443 3334666666666554332 11233442 3455555544 3343444431 2233443331 111111
Q ss_pred hhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhccccc--ccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 003195 555 SNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDI--SAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQV 632 (840)
Q Consensus 555 ~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l 632 (840)
-..+...+..-.+.......+--+.++.+++.+-+.+.... .+..+ |..-..+.+...++...-+..++.||..+
T Consensus 299 cealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgp---paaehllarafdqnahakqeaaihaLaaI 375 (524)
T KOG4413|consen 299 CEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGP---PAAEHLLARAFDQNAHAKQEAAIHALAAI 375 (524)
T ss_pred HHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCC---hHHHHHHHHHhcccccchHHHHHHHHHHh
Confidence 11122222222222333456678889999998876654321 11112 22333344444344445677888888888
Q ss_pred HHHc
Q 003195 633 IKAF 636 (840)
Q Consensus 633 ~~~~ 636 (840)
...+
T Consensus 376 agel 379 (524)
T KOG4413|consen 376 AGEL 379 (524)
T ss_pred hccc
Confidence 8765
No 172
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=93.74 E-value=2.6 Score=43.71 Aligned_cols=193 Identities=18% Similarity=0.208 Sum_probs=114.3
Q ss_pred HHHHHHHHhHh-hcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHHhhchhhhhhh
Q 003195 399 MLLRLLFPVVK-EEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDK--NSQISCAILLKSYSSVASDVLSGY 475 (840)
Q Consensus 399 ~lL~~Ll~~l~-~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~d~--~~r~~~~~~i~ai~~~~~~~f~~~ 475 (840)
.-++.+...+. .++.+-||-.++.|+|.+.... ...++ .+|..|+ .+|.++-.++..+-.... ...-
T Consensus 67 ~Av~~l~~vl~desq~pmvRhEAaealga~~~~~----~~~~l----~k~~~dp~~~v~ETc~lAi~rle~~~~--~~~~ 136 (289)
T KOG0567|consen 67 DAVPVLVEVLLDESQEPMVRHEAAEALGAIGDPE----SLEIL----TKYIKDPCKEVRETCELAIKRLEWKDI--IDKI 136 (289)
T ss_pred hhhHHHHHHhcccccchHHHHHHHHHHHhhcchh----hHHHH----HHHhcCCccccchHHHHHHHHHHHhhc--cccc
Confidence 56777777772 2345789999999999886221 22222 2233343 456666666655422111 0000
Q ss_pred HhhHhHHHHHhhcCCch-----HHHHHHHHHHHHhcCCChhhHHhh----------HHHHHHHHHhhhcCCCHHHHHHHH
Q 003195 476 HAVIVPVIFISRFEDDK-----YVSDLFEELWEENTSGDRVTLQLY----------LGEIVSLICEGIASSSWSSKRKSA 540 (840)
Q Consensus 476 ~~~llP~l~~~~~d~d~-----~vr~~~~~i~~~~~~~~~~~i~~y----------l~~Il~~l~~~L~d~s~~vR~~Aa 540 (840)
....|+. . .|+-+ +|-++...+.++ ....+..| -++-+..+.+.+.+.|.-.|+.+|
T Consensus 137 -~~~~p~~--S-vdPa~p~~~ssv~~lr~~lld~----t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvA 208 (289)
T KOG0567|consen 137 -ANSSPYI--S-VDPAPPANLSSVHELRAELLDE----TKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVA 208 (289)
T ss_pred -cccCccc--c-CCCCCccccccHHHHHHHHHhc----chhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHH
Confidence 1122321 1 22211 122222222211 11111111 144567788888999999999999
Q ss_pred HHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcC
Q 003195 541 KAICKLGEILGESLSNYHHVLLESIMKEVPGRLW--EGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKI 618 (840)
Q Consensus 541 ~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~--~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 618 (840)
.++|.|-. +.-+|.|.+.|.+.++ =+|..+.+||+.++. +.-+++|.+-.++..
T Consensus 209 fVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--------------e~~~~vL~e~~~D~~ 264 (289)
T KOG0567|consen 209 FVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--------------EDCVEVLKEYLGDEE 264 (289)
T ss_pred HHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--------------HHHHHHHHHHcCCcH
Confidence 99998765 4567888888877653 479999999998863 556677777777888
Q ss_pred HHHHHHHHHHHHHHH
Q 003195 619 KKYREAAFSCLEQVI 633 (840)
Q Consensus 619 ~~~R~~Al~~L~~l~ 633 (840)
.-+|+.|..+|.-+-
T Consensus 265 ~vv~esc~valdm~e 279 (289)
T KOG0567|consen 265 RVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888988888776544
No 173
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=93.64 E-value=11 Score=39.86 Aligned_cols=237 Identities=11% Similarity=0.008 Sum_probs=143.4
Q ss_pred HHHhHhhcCcHHHHHHHHHHHHHhhhcCCHH-----HHHHHHHHHHHhhcCChhhhHHHHHHHHHHHhhchhhh-hhhHh
Q 003195 404 LFPVVKEEKSAAAKRAFASACASVLKYATPS-----QAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVL-SGYHA 477 (840)
Q Consensus 404 Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~-----~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~~~f-~~~~~ 477 (840)
|-+.| .+.+..+|..+...++.++...+.+ .+.-+++...+++ +|...-..+..++.++.+... | .....
T Consensus 4 Lg~~L-tsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl-~D~~~~~~~l~gl~~L~~~~~--~~~~~~~ 79 (262)
T PF14500_consen 4 LGEYL-TSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL-DDHACVQPALKGLLALVKMKN--FSPESAV 79 (262)
T ss_pred hhhhh-CCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh-ccHhhHHHHHHHHHHHHhCcC--CChhhHH
Confidence 34455 6788999999999999999887754 3444555555555 343332333555566653211 1 11222
Q ss_pred hHhHHHHHhhcC--CchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcC-CCHHHHHHHHHHHHHHHHHhCcch
Q 003195 478 VIVPVIFISRFE--DDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIAS-SSWSSKRKSAKAICKLGEILGESL 554 (840)
Q Consensus 478 ~llP~l~~~~~d--~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d-~s~~vR~~Aa~~L~~La~~~~~~l 554 (840)
.++-.++...+. --...|..+-+++..+.......++..-++++..+++.++. .+++-=--+++.+..+..... +
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~ 157 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--I 157 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--c
Confidence 233333321111 12235555445555544443334444445566666665544 467777778888888877765 3
Q ss_pred hhhHHHHHHHHHHhcCC-----CC-c--hhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHH
Q 003195 555 SNYHHVLLESIMKEVPG-----RL-W--EGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAF 626 (840)
Q Consensus 555 ~~~l~~llp~L~~~l~~-----r~-~--~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al 626 (840)
.++.+.++..+.--+.= .+ . --+++.-.+|..-...++ -|.+-.++.+..-+...+..++..++
T Consensus 158 ~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~--------~fa~~~~p~LleKL~s~~~~~K~D~L 229 (262)
T PF14500_consen 158 SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP--------LFAPFAFPLLLEKLDSTSPSVKLDSL 229 (262)
T ss_pred chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH--------hhHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 66677777776655531 11 1 126666666665554332 34577888888888777888999999
Q ss_pred HHHHHHHHHcCCcchHHhHHHHHHhhcc
Q 003195 627 SCLEQVIKAFRDPKFFNIIFPLLFEMCG 654 (840)
Q Consensus 627 ~~L~~l~~~~~~~~l~~~v~~i~~~l~~ 654 (840)
.+|..-+..++...+...+.++-..+..
T Consensus 230 ~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 230 QTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 9999999999876676666666666543
No 174
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=93.59 E-value=0.58 Score=42.30 Aligned_cols=94 Identities=11% Similarity=0.102 Sum_probs=71.0
Q ss_pred HhhHHHHHHHHHhhhcC----CCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHH
Q 003195 514 QLYLGEIVSLICEGIAS----SSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSIST 589 (840)
Q Consensus 514 ~~yl~~Il~~l~~~L~d----~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~ 589 (840)
+++.=.|+..+...+.| .+..-|+.+.++|+.+++..|+.+..+.++++-.|..++..+ +.++..+++...+++
T Consensus 6 ~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~ 83 (107)
T PF08064_consen 6 QPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIK 83 (107)
T ss_pred HHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHH
Confidence 33443455555555555 567889999999999999888899999999999999999876 678889999999998
Q ss_pred hcccccccCCCCchHHHHHHHHH
Q 003195 590 SCHKDISAEDPTTPFAIVDMVSS 612 (840)
Q Consensus 590 ~~~~~~~~~~~~~~~~i~~~l~~ 612 (840)
...+... .|++++++-.+.+
T Consensus 84 ~L~~~~l---~~ll~~~~~~l~~ 103 (107)
T PF08064_consen 84 TLDEEDL---GPLLDQIFAILLP 103 (107)
T ss_pred HCCHHHH---HHHHHHHHHHHHH
Confidence 7765322 2566666655544
No 175
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=93.55 E-value=0.67 Score=48.77 Aligned_cols=147 Identities=16% Similarity=0.118 Sum_probs=95.5
Q ss_pred HHHHHhhcC-CCCHhHHHHHHHHHHHhccCCh--HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccC-Cchhh
Q 003195 118 IPKLVRFQY-DPDKNVQDAMAHIWKSLVADPK--RTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGR-KFDQV 193 (840)
Q Consensus 118 vP~L~~~~~-Dp~~~VR~a~~~iw~~Lv~d~~--~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~-~~~~l 193 (840)
+.+|..++. ..+|.+++.+..+.......+. +.+.+ -..++-+.+-+.+++.++|+.|..|+.++.... ...++
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~--~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD--LGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH--cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 455555555 4578899988877777665431 22222 124555677778899999999999999986543 34467
Q ss_pred hHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHH
Q 003195 194 GKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIG 273 (840)
Q Consensus 194 ~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~ 273 (840)
+.|+++++..... ..-+..++.++.+++..++- . .+...++...+|.++. =+.+++..+|..++.
T Consensus 92 k~~i~~Vc~~~~s--~~lns~~Q~agLrlL~nLtv------~------~~~~~~l~~~i~~ll~-LL~~G~~~~k~~vLk 156 (254)
T PF04826_consen 92 KMYIPQVCEETVS--SPLNSEVQLAGLRLLTNLTV------T------NDYHHMLANYIPDLLS-LLSSGSEKTKVQVLK 156 (254)
T ss_pred HHHHHHHHHHHhc--CCCCCHHHHHHHHHHHccCC------C------cchhhhHHhhHHHHHH-HHHcCChHHHHHHHH
Confidence 7888888776643 23455677788777766521 1 1223444445665553 134456788999999
Q ss_pred HHHHHHHh
Q 003195 274 VVMKLVKG 281 (840)
Q Consensus 274 ~L~~la~~ 281 (840)
+|.+++..
T Consensus 157 ~L~nLS~n 164 (254)
T PF04826_consen 157 VLVNLSEN 164 (254)
T ss_pred HHHHhccC
Confidence 99999864
No 176
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=93.47 E-value=1.1 Score=43.78 Aligned_cols=142 Identities=8% Similarity=0.069 Sum_probs=77.3
Q ss_pred HhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHh-hcCcHHHHHHHHHHHHHhhhcCCH
Q 003195 355 LDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVK-EEKSAAAKRAFASACASVLKYATP 433 (840)
Q Consensus 355 l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~-~d~~~~Vr~~a~~Alg~l~~~~~~ 433 (840)
-+++++.|.+.+++...+..|.+++++++.| ..+.||--+.+..-...-. .+.+...........+.. ..++
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGil-----GALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~e 80 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGIL-----GALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGIS--PSSE 80 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-----cccCcHHHhcccccCCccccccccccchhhHHhhccCC--CchH
Confidence 3678899999999887788999999999887 3555664442222111100 000111111111000000 0111
Q ss_pred HHHH-HHHHHHHHhhcC--ChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHH
Q 003195 434 SQAQ-KLIEETAALHID--DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWE 503 (840)
Q Consensus 434 ~~~~-~li~~l~~~~~~--d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~ 503 (840)
+... -.+..++..+.+ -...+..+.+++..+.+..+....+|+++++|.++......++..++.+...+.
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~ 153 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLA 153 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1111 112222222211 123455778888888888887788999999998877666555577776544443
No 177
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.41 E-value=0.83 Score=48.29 Aligned_cols=117 Identities=10% Similarity=0.151 Sum_probs=90.2
Q ss_pred hhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHh
Q 003195 511 VTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTS 590 (840)
Q Consensus 511 ~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~ 590 (840)
+.+...+.+++-.+.+.+++....|-++|..+++++...+++.+.+.++.++-.|...-....--+++++-.||.+....
T Consensus 121 e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~ 200 (334)
T KOG2933|consen 121 ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNH 200 (334)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc
Confidence 34556677778888889999999999999999999999999887766666666655555444445789999999998864
Q ss_pred cccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcC
Q 003195 591 CHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFR 637 (840)
Q Consensus 591 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~ 637 (840)
-. ...+++.|....++.+..+|..+..|+...+..++
T Consensus 201 vt----------p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 201 VT----------PQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred cC----------hHHHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 33 24566667777878899999999988877776654
No 178
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=93.30 E-value=21 Score=41.82 Aligned_cols=162 Identities=14% Similarity=0.040 Sum_probs=100.7
Q ss_pred HHHHHHHHHHhccCccccHHHHHHHHHHhHhhcC--cHHHHHHHHHHH---HHhhhcCCHHHHHHHHHHHHHhhc-----
Q 003195 379 ASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEK--SAAAKRAFASAC---ASVLKYATPSQAQKLIEETAALHI----- 448 (840)
Q Consensus 379 ~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~--~~~Vr~~a~~Al---g~l~~~~~~~~~~~li~~l~~~~~----- 448 (840)
.+++..|++..... ...+.+++.+..++ ... +..+|..+..-+ ...++.+++..+..+-+.+.....
T Consensus 301 ~kIL~~L~kS~~Aa--~~~~~~~~i~~~~l-~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~ 377 (501)
T PF13001_consen 301 EKILSLLSKSVIAA--TSFPNILQIVFDGL-YSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQD 377 (501)
T ss_pred HHHHHHHHHhHHHH--hCCccHHHHHhccc-cCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcccccc
Confidence 34555555543221 24577888888888 444 667777777777 888888888877776666554321
Q ss_pred --------CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHH----hh
Q 003195 449 --------DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQ----LY 516 (840)
Q Consensus 449 --------~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~----~y 516 (840)
++...|..+=.++|.+++..+..|..-+. ++-.+|....++++++|....+.+..+.+.....-. ..
T Consensus 378 ~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~-li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~ 456 (501)
T PF13001_consen 378 SSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLS-LIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQK 456 (501)
T ss_pred ccccCCCcccHHHHHHHHHHHHHHHccCcccccccHH-HHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHH
Confidence 12456888889999999999887754444 666778888778889998777766554432111000 01
Q ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHH
Q 003195 517 LGEIVSLICEGIASSSWSSKRKSAKAIC 544 (840)
Q Consensus 517 l~~Il~~l~~~L~d~s~~vR~~Aa~~L~ 544 (840)
...+.-++.....+....+|..|.+...
T Consensus 457 ~~~~~~l~~~~~~~~~~~~R~~avk~an 484 (501)
T PF13001_consen 457 RLLLELLLLSYIQSEVRSCRYAAVKYAN 484 (501)
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 1112223334445556667777666554
No 179
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=92.91 E-value=2.9 Score=49.15 Aligned_cols=132 Identities=10% Similarity=0.094 Sum_probs=91.9
Q ss_pred HhhHHHHHHHHHhhhc-CCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcc
Q 003195 514 QLYLGEIVSLICEGIA-SSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCH 592 (840)
Q Consensus 514 ~~yl~~Il~~l~~~L~-d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~ 592 (840)
..|.+.+++.+...++ ...-+++-.-.+=+.-|.+++... .+...++|.|..++++.+-...+.++..+..+++...
T Consensus 344 ~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e--~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD 421 (700)
T KOG2137|consen 344 NEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPE--EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID 421 (700)
T ss_pred hhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChH--HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc
Confidence 3455556665555544 223333333334444455665532 2468999999999999988999999999999988654
Q ss_pred cccccCCCCchHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHcCCcchHHhHHHHHHhhc
Q 003195 593 KDISAEDPTTPFAIVDMVSSA-CRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMC 653 (840)
Q Consensus 593 ~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~~l~ 653 (840)
... ..+.|++.|... .+..+..++..++-|++.+++.+..-.+.+.+.|+.....
T Consensus 422 ~~~------vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~ 477 (700)
T KOG2137|consen 422 VPF------VKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIK 477 (700)
T ss_pred HHH------HHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 221 235566666664 4456789999999999999988876678888899988773
No 180
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=92.89 E-value=9.8 Score=40.85 Aligned_cols=60 Identities=17% Similarity=0.251 Sum_probs=47.0
Q ss_pred CChhHHHHHH-HHHHHHHc-cCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 003195 169 RLWRSREASC-LSLADIIQ-GRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTS 228 (840)
Q Consensus 169 ~~wrvR~aac-~Al~~Ll~-~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~ 228 (840)
+.|+...+.. ..+.-++. ....+.++.+++-++|.++..+||..+.+|..+..++..+.+
T Consensus 87 ~~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~ 148 (282)
T PF10521_consen 87 QPWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLE 148 (282)
T ss_pred CCcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3687665333 45555665 667778999999999999999999999999999888877743
No 181
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=92.78 E-value=1.5 Score=42.86 Aligned_cols=124 Identities=5% Similarity=0.064 Sum_probs=87.5
Q ss_pred HHhhHHHHHHHHHhhhc------------------CCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCc
Q 003195 513 LQLYLGEIVSLICEGIA------------------SSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLW 574 (840)
Q Consensus 513 i~~yl~~Il~~l~~~L~------------------d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~ 574 (840)
+.++++.|+|.++..+. |.--++|.+|+.++..+.......+. +..++..+..++.+ ..
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D-~~ 79 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRID--ISEFLDRVEAGLKD-EH 79 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--H
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCC-cH
Confidence 45778888888886652 56679999999999999998777663 67789999999999 88
Q ss_pred hhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhh--------cCHHHHHHHHHHHHHHHHHcCCc
Q 003195 575 EGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRK--------KIKKYREAAFSCLEQVIKAFRDP 639 (840)
Q Consensus 575 ~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--------~~~~~R~~Al~~L~~l~~~~~~~ 639 (840)
+.|--...-+.-++..++..+......+++.+-+++....+. +..+..+.+++++..+-..+++.
T Consensus 80 DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~ 152 (169)
T PF08623_consen 80 DIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGA 152 (169)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999888888888887776555433335566666666544433 34567788888888887777653
No 182
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=92.73 E-value=5.2 Score=44.18 Aligned_cols=86 Identities=10% Similarity=0.060 Sum_probs=53.5
Q ss_pred HHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhh----cCCH
Q 003195 358 LVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLK----YATP 433 (840)
Q Consensus 358 lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~----~~~~ 433 (840)
++..+...+.+...-.+....+.++..=...++ ...-+.+++.+.+++ .|+.+.||+.+..++|..+. ....
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~---~~~~~~~~~~~~kGl-~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFLS---SELPKKVVDAFKKGL-KDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhC---cCCCHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 333333344443233333444444443333332 234578899999999 78888899999999999987 3334
Q ss_pred HHHHHHHHHHHHhh
Q 003195 434 SQAQKLIEETAALH 447 (840)
Q Consensus 434 ~~~~~li~~l~~~~ 447 (840)
..+..+++.+.+.+
T Consensus 99 ~~~~~~~~~L~~~~ 112 (339)
T PF12074_consen 99 KFAEPFLPKLLQSL 112 (339)
T ss_pred HHHHHHHHHHHHHH
Confidence 45567777777766
No 183
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.73 E-value=1.1 Score=49.12 Aligned_cols=134 Identities=16% Similarity=0.208 Sum_probs=105.7
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003195 158 IFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVT 237 (840)
Q Consensus 158 Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~ 237 (840)
-+.+|+..+..-+..||.-+-..+-+++... +..+..++-.+++.+.....|....||.+...+...+... .|.
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~-p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~---~~~-- 132 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSH-PAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILP---ACK-- 132 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhC-hHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhh---cch--
Confidence 4566888999999999999999999999873 4567778889999988888888899999998888876432 222
Q ss_pred ccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcc
Q 003195 238 LTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLS 302 (840)
Q Consensus 238 ~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls 302 (840)
++-...+..++|++. .++.....++|.-++..+.-++..+++.+.-+...+++.+.+.++
T Consensus 133 ----e~~sp~~~l~~~yi~-~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~ 192 (393)
T KOG2149|consen 133 ----EDQSPMVSLLMPYIS-SAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVIS 192 (393)
T ss_pred ----hhhcchHHHHHHHHH-HHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 122356788888876 477778899999999999999999988877777666666666554
No 184
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=92.49 E-value=19 Score=43.08 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=66.2
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHH--HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCc--hhh
Q 003195 118 IPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTID--EHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKF--DQV 193 (840)
Q Consensus 118 vP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~--~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~--~~l 193 (840)
+|..+.|+..++|.|+-.+..-...+.-...++.. ..+.. ++.|+..+..+.-+|+..+|.||-+|+-+... ..+
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlgg-I~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGG-IPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhcc-HHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 56666667788888887765555555432111111 11222 34577888899999999999999999987654 233
Q ss_pred hHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHH
Q 003195 194 GKHLRRIWTAAFRAMDD-IKETVRTAGDKLCRSVTS 228 (840)
Q Consensus 194 ~~~L~~l~~~l~~~ldD-~~~~VR~aA~~~~~~l~~ 228 (840)
.-.-..=++.+.+++.. ...+||+....++++|.+
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS 349 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSS 349 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccc
Confidence 31111222333444432 234678877777777754
No 185
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.03 E-value=27 Score=41.17 Aligned_cols=150 Identities=11% Similarity=0.053 Sum_probs=108.0
Q ss_pred HhHHHHHhhcCCchHHHHHHHHHHHHhcCCC-h----hhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcc
Q 003195 479 IVPVIFISRFEDDKYVSDLFEELWEENTSGD-R----VTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES 553 (840)
Q Consensus 479 llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~-~----~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~ 553 (840)
.-|.++.+....+.+||..+..++-++.|-. + ..+...++.=...+.+.|.|+-..||..|...+..+...+=+.
T Consensus 175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~ 254 (1005)
T KOG1949|consen 175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM 254 (1005)
T ss_pred HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 3478888888888899988777776665522 1 2233334444556778899999999999999998888765555
Q ss_pred hhhh-HHHHHHHHHHhcC-CCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 003195 554 LSNY-HHVLLESIMKEVP-GRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQ 631 (840)
Q Consensus 554 l~~~-l~~llp~L~~~l~-~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~ 631 (840)
+.+. +..++..+...+. +...++|..+++.+..++-.-- ..+..+.+++++--.+.|++.++|-++...|-.
T Consensus 255 iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~------sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 255 IPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL------SHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLK 328 (1005)
T ss_pred cCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc------chhHHHHHHHhcchhhhccchhHHHHHHHHHHH
Confidence 5442 5666666666664 4446899999999888874211 125678888888888889999999999888876
Q ss_pred HHH
Q 003195 632 VIK 634 (840)
Q Consensus 632 l~~ 634 (840)
+-.
T Consensus 329 ik~ 331 (1005)
T KOG1949|consen 329 IKA 331 (1005)
T ss_pred HHh
Confidence 644
No 186
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.87 E-value=0.77 Score=51.94 Aligned_cols=130 Identities=15% Similarity=0.139 Sum_probs=89.2
Q ss_pred CCchHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHH
Q 003195 71 GQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRT 150 (840)
Q Consensus 71 g~p~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~ 150 (840)
|.-..|-.+++.+-+..+-.-||+|..|+|-||-+-.+. +...+.-| -..-|+.||-...-+.+..+.+.-
T Consensus 548 gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~----lv~tvelL---s~shN~hVR~g~AvaLGiacag~G-- 618 (926)
T COG5116 548 GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDL----LVGTVELL---SESHNFHVRAGVAVALGIACAGTG-- 618 (926)
T ss_pred CcchhHhhhheeecccCchHHHHHHHHheeeeEecCcch----hhHHHHHh---hhccchhhhhhhHHHhhhhhcCCc--
Confidence 444667777777655444578999999999887554332 23333333 345699999988777776665542
Q ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHH
Q 003195 151 IDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKET 214 (840)
Q Consensus 151 i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~ 214 (840)
++.--.|+..| +.|..--||++||.|.+.++..+. +++.|....|...+.++..|.+++
T Consensus 619 -~~~a~diL~~L---~~D~~dfVRQ~AmIa~~mIl~Q~n-~~Lnp~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 619 -DKVATDILEAL---MYDTNDFVRQSAMIAVGMILMQCN-PELNPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred -cHHHHHHHHHH---hhCcHHHHHHHHHHHHHHHHhhcC-cccChhHHHHHHHHHHHHhhhhHh
Confidence 22222333333 346666899999999998876544 578999999999999999988873
No 187
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=91.51 E-value=0.44 Score=46.54 Aligned_cols=96 Identities=18% Similarity=0.176 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHHHhc------------------cccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHH
Q 003195 193 VGKHLRRIWTAAFRAMD------------------DIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPF 254 (840)
Q Consensus 193 l~~~L~~l~~~l~~~ld------------------D~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~ 254 (840)
+.++|+.++|.++.-.. |.--.+|++|...+.++-. .|... . -+..++..
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd----~~~~~----~----~~~~~~~~ 70 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLD----TCLSR----I----DISEFLDR 70 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHH----STCSS----S-----HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHH----HHHHh----C----CHHHHHHH
Confidence 45677888888775441 5556789999999888844 33211 1 13334555
Q ss_pred HHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcc
Q 003195 255 LLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLS 302 (840)
Q Consensus 255 Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls 302 (840)
+. .|+.+ ..++|..+..++.+++...+..+.++++.+++.|-..++
T Consensus 71 v~-~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 71 VE-AGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp HH-HTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HH-hhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 54 59876 889999999999999999998899999999999988775
No 188
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.47 E-value=32 Score=42.10 Aligned_cols=116 Identities=14% Similarity=0.168 Sum_probs=72.0
Q ss_pred hhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhcc-----CChHHHHHHHHHHHHHHHHhhC
Q 003195 93 RGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVA-----DPKRTIDEHLDLIFDDLLIQSG 167 (840)
Q Consensus 93 ~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~-----d~~~~i~~~~~~Il~~Ll~~l~ 167 (840)
.-+..++|.|++--|+.+.++|--.+=.++.-.-+|++.|++.+..|.-.+.. .++..++++.|-++..+-..++
T Consensus 566 Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~ 645 (1014)
T KOG4524|consen 566 CIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLN 645 (1014)
T ss_pred hhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhc
Confidence 45667888888877888887765333333455689999999987666555543 2456778888888777766664
Q ss_pred C--CChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccH
Q 003195 168 S--RLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKE 213 (840)
Q Consensus 168 ~--~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~ 213 (840)
. -.+|+-. ..++ +-..+.-...+|+.+++...|..+|--+.
T Consensus 646 ~~~~s~~~~~--Vl~v---Vl~~s~~~~i~~l~dvvq~i~~~lD~yH~ 688 (1014)
T KOG4524|consen 646 TSGMSPRVPD--VLMV---VLQYSDYGTIPNLKDVVQTIFKLLDYYHG 688 (1014)
T ss_pred cCCCCchhHH--HHHH---HhhcCCCCchhhHHHHHHHHHHHHHHhcc
Confidence 2 1233322 1111 11111123567888888888887775443
No 189
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=91.40 E-value=2.7 Score=42.46 Aligned_cols=165 Identities=16% Similarity=0.177 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCChh-hhH
Q 003195 377 GVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKN-SQI 455 (840)
Q Consensus 377 ~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~d~~-~r~ 455 (840)
.++.+++.+..++|....|+..++++.+-..= .+.+...|+++=.++|..++.++++.+-++++--.+. .++.+ .|.
T Consensus 19 ~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr-~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~-~~~~~~~ra 96 (198)
T PF08161_consen 19 EVLNVLSALFEKLGERSSPLLKPILKTLGDLR-ESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDN-ADDSQPGRA 96 (198)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHHH-cCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccC-CCcCCcccc
Confidence 46778888899999888888999988888776 5666889999999999999999999877665532221 11111 121
Q ss_pred HHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhc---C-----CchHHH---HHHHHHHHHhcCC--ChhhHHhhHHHHHH
Q 003195 456 SCAILLKSYSSVASDVLSGYHAVIVPVIFISRF---E-----DDKYVS---DLFEELWEENTSG--DRVTLQLYLGEIVS 522 (840)
Q Consensus 456 ~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~---d-----~d~~vr---~~~~~i~~~~~~~--~~~~i~~yl~~Il~ 522 (840)
=..-++..-. .+..+..|.+.++|+.-.... + ...+.+ ....++|.-+-+- .+..+....+.+-+
T Consensus 97 WLLPlLr~~i--~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F~~~a~ 174 (198)
T PF08161_consen 97 WLLPLLRDHI--RNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESFPSFAK 174 (198)
T ss_pred hhHHHHHHhc--cCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHHHHHHH
Confidence 1111222211 234566777888887643211 1 111222 3456888654332 23344444477777
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHH
Q 003195 523 LICEGIASSSWSSKRKSAKAICKL 546 (840)
Q Consensus 523 ~l~~~L~d~s~~vR~~Aa~~L~~L 546 (840)
.+.+.|.+. .++|.....+|..|
T Consensus 175 ~L~~~L~~~-~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 175 LLGNALYDQ-PDLRPIICQALRRL 197 (198)
T ss_pred HHHHHHhcC-cchHHHHHHHHHHH
Confidence 777777664 66777776666554
No 190
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=91.38 E-value=0.76 Score=40.29 Aligned_cols=59 Identities=7% Similarity=0.206 Sum_probs=46.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCC--CchhHHHHHHHHHHH
Q 003195 529 ASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGR--LWEGKDALLYAIGSI 587 (840)
Q Consensus 529 ~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r--~~~~Ke~vl~aL~~l 587 (840)
.+.+|.+|..||..|+.++..++.......+.++..+.+.+.+. ++...-.++.+|.++
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 36799999999999999999998766556678999999999744 455666666666665
No 191
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=91.26 E-value=26 Score=38.34 Aligned_cols=167 Identities=12% Similarity=0.262 Sum_probs=90.0
Q ss_pred hHHhHHHhHHHHHHhc---ccCCchhHHHHH-HHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhh
Q 003195 243 DARQSMDIVLPFLLAE---GILSKVDSISKA-SIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAAN 318 (840)
Q Consensus 243 ~~~~~l~~lLP~Ll~~---gL~s~~~evr~~-al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~ 318 (840)
+...+...++|.|++. .-....++.|.. .+..+..++++.+..+.|++|.++..+.+..-.. + .
T Consensus 60 ~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~M-------I----~- 127 (319)
T PF08767_consen 60 DPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPM-------I----N- 127 (319)
T ss_dssp -HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHH-------H----S-
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-------H----H-
Confidence 3455667777776641 011123344433 4788889999999999999999998888643211 0 0
Q ss_pred cccchhhhHHHHHhhccCCcHHHHHH-HHHh---hcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhcc---
Q 003195 319 AGIQTEKLENLRISIAKGSPMWDTLD-LCIN---VVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGM--- 391 (840)
Q Consensus 319 ~~~~~~~~d~~R~~~~~~s~l~eal~-~~~~---~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~--- 391 (840)
.+.+..++.|....+ +..++. .|.+ .++.+.++.++..+.-++++. .-.+-..+++++..|......
T Consensus 128 --~d~~~yPe~r~~ff~---LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~-~~~I~~~~L~~l~~ll~~~~~~~~ 201 (319)
T PF08767_consen 128 --KDFEEYPEHRVNFFK---LLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT-NREISETGLNILLELLNNVSKTNP 201 (319)
T ss_dssp --STSSSSHHHHHHHHH---HHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHHHHHH-SH
T ss_pred --hhhhhChHHHHHHHH---HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHhcCH
Confidence 011223444543321 222232 2322 246677788888887777764 334445688888888766544
Q ss_pred C-----ccccHHHHHHHHHHhHhhcCc-HHHHHHHHHHHHHhh
Q 003195 392 D-----IKPYTSMLLRLLFPVVKEEKS-AAAKRAFASACASVL 428 (840)
Q Consensus 392 ~-----~~p~~~~lL~~Ll~~l~~d~~-~~Vr~~a~~Alg~l~ 428 (840)
. ++.|.-.++..++..+ .|.. ...-+.-+..+..++
T Consensus 202 ~~~~~F~~~y~~~il~~if~vl-tD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 202 EFANQFYQQYYLDILQDIFSVL-TDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HSTT-GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HCcccHHHHHHHHHHHHHHH
Confidence 1 2234445566666666 3432 223333334444444
No 192
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.25 E-value=3.8 Score=52.97 Aligned_cols=179 Identities=11% Similarity=0.061 Sum_probs=110.1
Q ss_pred cHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc----CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhc
Q 003195 413 SAAAKRAFASACASVLKYATPSQAQKLIEETAALHI----DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRF 488 (840)
Q Consensus 413 ~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~----~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~ 488 (840)
.+.+|+-++.+++.++.....-....++..+.+.+. .+...+..+..++++.-...|.....-....+.++.....
T Consensus 65 ~~p~rkL~s~~i~rl~~~gd~f~~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~~~~edt~~if~~~~k 144 (2067)
T KOG1822|consen 65 GPPTRKLISVAIARLISNGDSFSLYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIGRGLEDTVQIFTKLVK 144 (2067)
T ss_pred CchhHHHHHHHHHHHHhccchhhHHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhhcchHHHHHHHHHHHHh
Confidence 356677777777777765211111222222222222 1233445566677766555554443333345554444333
Q ss_pred CCchHHHHHHHHHHHHhcCCCh--hhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcch-hhhHHHHHHHH
Q 003195 489 EDDKYVSDLFEELWEENTSGDR--VTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESL-SNYHHVLLESI 565 (840)
Q Consensus 489 d~d~~vr~~~~~i~~~~~~~~~--~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l-~~~l~~llp~L 565 (840)
-.+..+|..+...+.....+++ .+...+...+.-.....+.|.+..+|.+|++|+..+....+..+ ..-++.....+
T Consensus 145 ~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld~s~~v~iaa~rc~~a~s~~~~~~~~~Sele~~~s~c 224 (2067)
T KOG1822|consen 145 TNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSLLDRSFNVKIAAARCLKAFSNLGGPGLGTSELETLASYC 224 (2067)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhhhhhhHHHHHHhHHHHHHHHhhcCccccchhhhhhccee
Confidence 3333344332222222222121 34455667788888888999999999999999999998766655 44578888889
Q ss_pred HHhcCCCCchhHHHHHHHHHHHHHhc
Q 003195 566 MKEVPGRLWEGKDALLYAIGSISTSC 591 (840)
Q Consensus 566 ~~~l~~r~~~~Ke~vl~aL~~l~~~~ 591 (840)
.+++.+.+|..|.++-+++++++.-.
T Consensus 225 fk~~~~s~~~~r~a~a~~~~~Lla~~ 250 (2067)
T KOG1822|consen 225 FKGIEISNSEVRCAVAEFLGSLLALG 250 (2067)
T ss_pred eeeeccchHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999998755
No 193
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=90.85 E-value=1.2 Score=40.27 Aligned_cols=78 Identities=13% Similarity=0.170 Sum_probs=62.5
Q ss_pred HhhHHHHHHHHHhhhcCCC----HHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHH
Q 003195 514 QLYLGEIVSLICEGIASSS----WSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSIST 589 (840)
Q Consensus 514 ~~yl~~Il~~l~~~L~d~s----~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~ 589 (840)
++++=.|+..+...+.|.+ ..-|..+..+++.+++..|..+..++++++-.|..++... +-++..+++...++.
T Consensus 6 ~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~--eL~~~al~~W~~~i~ 83 (107)
T smart00802 6 KDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP--ELRSLALRCWHVLIK 83 (107)
T ss_pred HHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHH
Confidence 4444456666666676654 3458999999999999999999999999999999999854 578889999999988
Q ss_pred hccc
Q 003195 590 SCHK 593 (840)
Q Consensus 590 ~~~~ 593 (840)
...+
T Consensus 84 ~L~~ 87 (107)
T smart00802 84 TLKE 87 (107)
T ss_pred hCCH
Confidence 7654
No 194
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.78 E-value=68 Score=42.35 Aligned_cols=259 Identities=14% Similarity=0.123 Sum_probs=140.3
Q ss_pred ccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCc
Q 003195 259 GILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSP 338 (840)
Q Consensus 259 gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~ 338 (840)
.+...++-.|-.+...++.++...+.. ||+..+...++..+.+..+...+--+
T Consensus 884 sl~~~~p~~rc~~~ea~arLaq~v~~~--~f~a~~aq~~fdklas~~d~i~R~gh------------------------- 936 (2067)
T KOG1822|consen 884 SLINPNPKLRCAAAEALARLAQVVGSA--PFVASLAQNSFDKLASARDPITRTGH------------------------- 936 (2067)
T ss_pred hhccCChHHHHHHHHHHHHHHHhcccc--chHHHHHHHHHHHHHhcCCcHHHHHH-------------------------
Confidence 355567778888889999999888875 88888888888777654443321100
Q ss_pred HHHHHHHHHhhc----ChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCc-
Q 003195 339 MWDTLDLCINVV----DTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKS- 413 (840)
Q Consensus 339 l~eal~~~~~~~----d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~- 413 (840)
.-|++-+-+|+ +.+.+..-+..+....+++....++.-++..+..++...+..+.-|.+..+..+...+.+++.
T Consensus 937 -slalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~ 1015 (2067)
T KOG1822|consen 937 -SLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTS 1015 (2067)
T ss_pred -HHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcc
Confidence 11233333333 234455545556666677655566777888888888888888889999999999998865442
Q ss_pred -HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCch
Q 003195 414 -AAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDK 492 (840)
Q Consensus 414 -~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~ 492 (840)
.+|+..+ +++. .+++....++..+-..+..+... +.-..+....+-........+++
T Consensus 1016 ~~ev~q~~----~R~~--~~~~~~~alittlgpeL~~N~~~----------------d~t~~~rts~la~~allls~~d~ 1073 (2067)
T KOG1822|consen 1016 HVEVHQCY----NRCF--NGDDDEDALITTLGPELGPNGDK----------------DSTSTLRTSCLAACALLLSHSDP 1073 (2067)
T ss_pred hhhhhhhh----cccc--ccchhHHHHHHhcccccCCCCcc----------------cchhHHHHHHHHHHHHhcCCCcc
Confidence 3344333 3322 33333444443333333211100 00001111111000000111223
Q ss_pred HHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhc
Q 003195 493 YVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEV 569 (840)
Q Consensus 493 ~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l 569 (840)
-+.....+.+..+.--.+. ....+.++..++..+.++.--.|+++..++..++..--.....|-..+.+.+...+
T Consensus 1074 lnqa~ai~clqqlhlFapr--~~n~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~ 1148 (2067)
T KOG1822|consen 1074 LNQAAAIKCLQQLHLFAPR--HVNLDSLVLQLCSLLSSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVET 1148 (2067)
T ss_pred chHHHHHHHHHHHHhhcch--hccHHHHHHHHHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhh
Confidence 3333222333222111111 23456677777888888888889999999999887544444444444444333333
No 195
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.68 E-value=19 Score=41.45 Aligned_cols=108 Identities=10% Similarity=0.082 Sum_probs=75.7
Q ss_pred HhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhccc
Q 003195 514 QLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHK 593 (840)
Q Consensus 514 ~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~ 593 (840)
..++..++..+++++.+++-.||..+.+.|+.+....++-=...+..+...|.+++-+|+..+|..++.+|.-+-.-...
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC
Confidence 35677788888899999999999999999999998887633335678888899999999988886666666554332221
Q ss_pred ccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHH
Q 003195 594 DISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSC 628 (840)
Q Consensus 594 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~ 628 (840)
.......+++.+++- +.+..+|+.|+.-
T Consensus 166 -----een~~~n~l~~~vqn--DPS~EVRr~alln 193 (885)
T COG5218 166 -----EENRIVNLLKDIVQN--DPSDEVRRLALLN 193 (885)
T ss_pred -----hHHHHHHHHHHHHhc--CcHHHHHHHHHHH
Confidence 012233344433332 5677999998765
No 196
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=90.42 E-value=1.6 Score=51.02 Aligned_cols=189 Identities=10% Similarity=0.110 Sum_probs=118.9
Q ss_pred HHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHh
Q 003195 437 QKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQL 515 (840)
Q Consensus 437 ~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~ 515 (840)
..+++.+.+++. .|...|..--+-+..+..+..+ ..+-++++|.+..|..|.++-+|+.-......+++-.+.. .
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~--~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~ 404 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTK--QILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--N 404 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCH--HhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--h
Confidence 456666777664 3555665444433333333222 1345678999888999999999987666655555543221 2
Q ss_pred hHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHH-HHHHHHhcCCCCchhHHHHHHHHHHHHHhcccc
Q 003195 516 YLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVL-LESIMKEVPGRLWEGKDALLYAIGSISTSCHKD 594 (840)
Q Consensus 516 yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~l-lp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~ 594 (840)
.-.+++..+.+.-.|.+..+|-...-|+|.++....... ...+ .-...+++++.-.+-|.+.+.+|.+..+-
T Consensus 405 Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~---- 477 (690)
T KOG1243|consen 405 LNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEY---- 477 (690)
T ss_pred hcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccc----
Confidence 335788888888788889999998888887765432211 1122 22334456665556676666666544321
Q ss_pred cccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCC
Q 003195 595 ISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD 638 (840)
Q Consensus 595 ~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~ 638 (840)
+. ......+|++.+.-...+.+..+|..|+.++..+...++.
T Consensus 478 ~~--~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 478 FD--QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred cc--hhhhhhhccccccccccCcccchhhHHHHHHHHHHhhhhh
Confidence 11 1134567777777777788899999999999888877654
No 197
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.40 E-value=67 Score=41.62 Aligned_cols=141 Identities=11% Similarity=0.096 Sum_probs=82.7
Q ss_pred HHHHHHHHHhccCCCchHhHHHHHHHHHH--HHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHH
Q 003195 358 LVPHLARLVRSGIGLNTRVGVASFISLLV--QKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQ 435 (840)
Q Consensus 358 lvp~L~~~lk~~~~~~~r~~a~~~l~~L~--~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~ 435 (840)
++..+..+..++..|.+|.+++.++..++ ..++ ...+.-+.+-..+.+.+ +|..-.||+.++.++..++....-..
T Consensus 1527 ~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l-~D~~i~vre~Aa~~Lsgl~~~s~~~~ 1604 (1710)
T KOG1851|consen 1527 FLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLL-NDDQIEVREEAAKCLSGLLQGSKFQF 1604 (1710)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHH-cchHHHHHHHHHHHHHHHHhcccccc
Confidence 33333333334556888989888887754 3344 45677889999999999 78878999999999999987654433
Q ss_pred HHHHHHHHHHhh---cCChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchH-HHHHHHHHH
Q 003195 436 AQKLIEETAALH---IDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKY-VSDLFEELW 502 (840)
Q Consensus 436 ~~~li~~l~~~~---~~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~-vr~~~~~i~ 502 (840)
..+-.+...... ..|....-.+...++++.-..|-.+-.++.+.+- ..++++.++. ++....++.
T Consensus 1605 ~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~--~Ls~fa~e~~~i~~tvkktv 1673 (1710)
T KOG1851|consen 1605 VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLM--NLSSFARESAAIKQTVKKTV 1673 (1710)
T ss_pred chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHH--HHHhhcCCchHHHHHHHHHH
Confidence 332112221111 1233344566778888877666433333322222 2255654443 444433333
No 198
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=90.11 E-value=3.8 Score=37.02 Aligned_cols=99 Identities=15% Similarity=0.122 Sum_probs=70.3
Q ss_pred hhhchhhhhHHHHHHhhcCC----CCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 003195 108 DALKPHLRLLIPKLVRFQYD----PDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLAD 183 (840)
Q Consensus 108 ~~l~~~l~~lvP~L~~~~~D----p~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~ 183 (840)
+.+++++--++-.+=....| ....-|+.+......++.-.+..+..+.+.|+-.|-..+..+ ..|+.++.+-..
T Consensus 3 ~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~ 80 (107)
T PF08064_consen 3 DFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNC 80 (107)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHH
Confidence 35556554444444444444 444455555566666665445567778888888888887765 788999999999
Q ss_pred HHccCCchhhhHHHHHHHHHHHHHh
Q 003195 184 IIQGRKFDQVGKHLRRIWTAAFRAM 208 (840)
Q Consensus 184 Ll~~~~~~~l~~~L~~l~~~l~~~l 208 (840)
++...+.+.+.+.+++++..+++..
T Consensus 81 fi~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 81 FIKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHhc
Confidence 9999888999999999988887654
No 199
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=89.93 E-value=34 Score=37.46 Aligned_cols=145 Identities=17% Similarity=0.270 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhcc---CChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHH-HHHHccCCchhhhHHHHHHHHHHHHH
Q 003195 132 VQDAMAHIWKSLVA---DPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSL-ADIIQGRKFDQVGKHLRRIWTAAFRA 207 (840)
Q Consensus 132 VR~a~~~iw~~Lv~---d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al-~~Ll~~~~~~~l~~~L~~l~~~l~~~ 207 (840)
||+.+..+....++ |+....+...++++..++..-.+..+..|++-...+ +.++... .+.+.++++.|+..+|..
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl-~~~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKL-GELIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHH-GGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHH
Confidence 45555555555554 333334445666666666655555666676654332 2333221 123445566666665554
Q ss_pred ----hc-c--ccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHH
Q 003195 208 ----MD-D--IKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVK 280 (840)
Q Consensus 208 ----ld-D--~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~ 280 (840)
.. | .-|..|..=.++++++...+...+-. -+...+..++-.+. -|+.++..++...+++++..+.+
T Consensus 122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~------lp~~~f~~~idsi~-wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQ------LPPEQFKLVIDSIV-WGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHH------S-HHHHHHHHHHHH-HHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHc------CCHHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHH
Confidence 32 3 34789998888888886655333210 12345566666665 38888889999999999999988
Q ss_pred hhcc
Q 003195 281 GAGI 284 (840)
Q Consensus 281 ~~g~ 284 (840)
....
T Consensus 195 ~~~~ 198 (319)
T PF08767_consen 195 NVSK 198 (319)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
No 200
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.52 E-value=3.1 Score=45.05 Aligned_cols=114 Identities=11% Similarity=0.033 Sum_probs=75.7
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH-HHHHHHHHHhcC-CCCchhHHHHHHHHHHHHHhcccccccCC
Q 003195 522 SLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH-HVLLESIMKEVP-GRLWEGKDALLYAIGSISTSCHKDISAED 599 (840)
Q Consensus 522 ~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l-~~llp~L~~~l~-~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~ 599 (840)
..+..++++.+..+|..|+..||.++..-+..-...+ ...++.|++.+. +..-..|..+|.|+.++++..........
T Consensus 127 ~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl 206 (342)
T KOG2160|consen 127 VPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFL 206 (342)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3344489999999999999999999986543111110 124556666665 33456789999999999998775432100
Q ss_pred CCchHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHcCC
Q 003195 600 PTTPFAIVDMVSSACRK--KIKKYREAAFSCLEQVIKAFRD 638 (840)
Q Consensus 600 ~~~~~~i~~~l~~~~~~--~~~~~R~~Al~~L~~l~~~~~~ 638 (840)
+ -.=..++.+.+.. .+.+.++.++..++.++..-+.
T Consensus 207 -~--~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 207 -K--LNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred -h--cCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 0 0002345555555 5678999999999999987654
No 201
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=89.50 E-value=12 Score=39.39 Aligned_cols=82 Identities=10% Similarity=0.121 Sum_probs=56.0
Q ss_pred cCCChhhHHhhHHHHHHHHHhhh------cC----CCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCC--C
Q 003195 506 TSGDRVTLQLYLGEIVSLICEGI------AS----SSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGR--L 573 (840)
Q Consensus 506 ~~~~~~~i~~yl~~Il~~l~~~L------~d----~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r--~ 573 (840)
.....--+.||+.+++|.++.|+ ++ ....+|.-||..++-+++..+......-+.+...+.+++-++ .
T Consensus 264 L~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~ 343 (450)
T COG5095 264 LKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKT 343 (450)
T ss_pred hcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccc
Confidence 33333456799999999888776 12 245699999999999998887765555577777788887544 4
Q ss_pred chhHHHHHHHHHHH
Q 003195 574 WEGKDALLYAIGSI 587 (840)
Q Consensus 574 ~~~Ke~vl~aL~~l 587 (840)
+...-.++..+..+
T Consensus 344 ~sT~YGalkgls~l 357 (450)
T COG5095 344 ESTQYGALKGLSIL 357 (450)
T ss_pred cchhhhhhhhhhhh
Confidence 55444555555444
No 202
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=88.17 E-value=5.1 Score=36.12 Aligned_cols=99 Identities=17% Similarity=0.120 Sum_probs=71.0
Q ss_pred hhhchhhhhHHHHHHhhcCCCC---Hh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 003195 108 DALKPHLRLLIPKLVRFQYDPD---KN-VQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLAD 183 (840)
Q Consensus 108 ~~l~~~l~~lvP~L~~~~~Dp~---~~-VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~ 183 (840)
+.+++++-.++-..-.-..|+. |. =|..+....+.+++-....+..+.+.|+-.|...+..+ ..|..|+.+-..
T Consensus 3 ~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~--eL~~~al~~W~~ 80 (107)
T smart00802 3 DFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP--ELRSLALRCWHV 80 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHH
Confidence 4566776666666666667776 22 14445555566665444567788889999888888765 589999999889
Q ss_pred HHccCCchhhhHHHHHHHHHHHHHh
Q 003195 184 IIQGRKFDQVGKHLRRIWTAAFRAM 208 (840)
Q Consensus 184 Ll~~~~~~~l~~~L~~l~~~l~~~l 208 (840)
++...+.+.+.+.+.+++..++...
T Consensus 81 ~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 81 LIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 9988887888888888877776543
No 203
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=88.14 E-value=4.1 Score=35.69 Aligned_cols=72 Identities=8% Similarity=0.035 Sum_probs=56.9
Q ss_pred HhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHH
Q 003195 366 VRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLI 440 (840)
Q Consensus 366 lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li 440 (840)
+.++ ..|+|..++..|..|+.+.. .-....+.++..++..+ .|..+-|.=+++.++..++...+...+..++
T Consensus 12 L~dp-~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L-~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~ 83 (92)
T PF10363_consen 12 LNDP-LPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQL-KDEDSYVYLNAIKGLAALADRHPDEVLPILL 83 (92)
T ss_pred ccCC-CcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHc-CCCCchHHHHHHHHHHHHHHHChHHHHHHHH
Confidence 3444 67899999999999988766 23345789999999999 7899999999999999999877665444433
No 204
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=87.13 E-value=25 Score=42.25 Aligned_cols=96 Identities=17% Similarity=0.218 Sum_probs=59.0
Q ss_pred HHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHHH
Q 003195 513 LQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGR---LWEGKDALLYAIGSIST 589 (840)
Q Consensus 513 i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r---~~~~Ke~vl~aL~~l~~ 589 (840)
...|.+.+.+.+....+..+...+..+.++||++.. +..++.|...+.++ +-..|-.++.||..+..
T Consensus 484 ~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~ 553 (618)
T PF01347_consen 484 IEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAK 553 (618)
T ss_dssp -GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGG
T ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhh
Confidence 345667777777777777888899999999998753 23556666666555 34556666666655533
Q ss_pred hcccccccCCCCchHHHHHHHHHHHhh--cCHHHHHHHHHHH
Q 003195 590 SCHKDISAEDPTTPFAIVDMVSSACRK--KIKKYREAAFSCL 629 (840)
Q Consensus 590 ~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~R~~Al~~L 629 (840)
.+ ...+.+++.+-..+ ++..+|.+|+..|
T Consensus 554 ~~-----------~~~v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 554 HC-----------PEKVREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp T------------HHHHHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred cC-----------cHHHHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 22 23455555554443 4678999998664
No 205
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.68 E-value=60 Score=41.47 Aligned_cols=116 Identities=9% Similarity=0.134 Sum_probs=79.9
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhh------hHHHHHHHHHHhc-C-CCCchhHHH-------HHHHHH
Q 003195 521 VSLICEGIASSSWSSKRKSAKAICKLGEILGESLSN------YHHVLLESIMKEV-P-GRLWEGKDA-------LLYAIG 585 (840)
Q Consensus 521 l~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~------~l~~llp~L~~~l-~-~r~~~~Ke~-------vl~aL~ 585 (840)
+..+.++..|.-.+||..|++++=.+...-|..+.+ +...++|.|.+.- + -++|+||+. ....++
T Consensus 999 l~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltis 1078 (1610)
T KOG1848|consen 999 LVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTIS 1078 (1610)
T ss_pred HHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHH
Confidence 445566677888899999999999999888877765 2456666665332 1 246888876 556666
Q ss_pred HHHHhccccccc--CCCC---chHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHc
Q 003195 586 SISTSCHKDISA--EDPT---TPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAF 636 (840)
Q Consensus 586 ~l~~~~~~~~~~--~~~~---~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~ 636 (840)
++++-+.+++.. ..+. .-+.++..+-+...+.++++.-+|+.++++++...
T Consensus 1079 gIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~si 1134 (1610)
T KOG1848|consen 1079 GIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSI 1134 (1610)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHH
Confidence 666666554421 1112 34566667777777789999999999999987643
No 206
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=85.86 E-value=27 Score=40.00 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCC
Q 003195 396 YTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT 432 (840)
Q Consensus 396 ~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~ 432 (840)
=+..+++.||..+..+.|....+.++.++.+++..+.
T Consensus 309 KLnPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~ 345 (441)
T PF12054_consen 309 KLNPIIRPLMDSIKREENELLQQRSAESLARLIQLCV 345 (441)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHh
Confidence 3567888889999888999999999999999987654
No 207
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.35 E-value=1.7 Score=43.46 Aligned_cols=87 Identities=13% Similarity=0.103 Sum_probs=64.6
Q ss_pred HhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHH---hCcchh
Q 003195 479 IVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEI---LGESLS 555 (840)
Q Consensus 479 llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~---~~~~l~ 555 (840)
.+|..+.|+.+.+-.-|..+.+-..++.-..+..+-+.+|.++.-+...+...+-++...+.+.|..|+.. .|..+.
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLV 194 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALV 194 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhh
Confidence 67777778776554444433322223222223567788999999999999999999999999999988865 457899
Q ss_pred hhHHHHHHHH
Q 003195 556 NYHHVLLESI 565 (840)
Q Consensus 556 ~~l~~llp~L 565 (840)
|||.+++|.+
T Consensus 195 PfYRQlLp~~ 204 (262)
T KOG3961|consen 195 PFYRQLLPVL 204 (262)
T ss_pred hHHHHhhhhh
Confidence 9999999987
No 208
>KOG1810 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.15 E-value=37 Score=42.85 Aligned_cols=222 Identities=13% Similarity=0.168 Sum_probs=128.5
Q ss_pred CCccchHHHHHHHhhh--cCCc----hHHHHHHHHhccccchhhhhhH--HhHHHHHHHH-hhhhhchhhhhHHHHHHhh
Q 003195 54 GGKLSTYKELCNLANE--MGQP----DLIYKFMDLANYQVSLNSKRGA--AFGFSKIAKQ-AGDALKPHLRLLIPKLVRF 124 (840)
Q Consensus 54 ~~~~styk~l~~lA~~--~g~p----~lv~~fm~la~~~~~w~sr~gA--~~~l~~I~~~-~~~~l~~~l~~lvP~L~~~ 124 (840)
.+...++..+|++-.. ..-| +.+-+.|+.....+.|-.||.| =+.+-+|.+. ....+++.+++-+-+|+--
T Consensus 708 e~~~~gf~~lC~f~~s~~~~~~~lp~~wLee~l~~i~~kt~~itRRSaGlP~ll~al~~te~~~~~k~ll~r~~~~Ll~i 787 (1417)
T KOG1810|consen 708 ESARPGFTALCSFLQSNESRFPELPELWLEELLEKILAKTSGITRRSAGLPFLLTALVETELKLGMKELLPRCFCKLLKI 787 (1417)
T ss_pred hhccccHHHHHHHHHhcccccccCcHHHHHHHHHHHHhhcccchhccCCCCHHHHHHHHhhhcccchhhhHHHHHHHHHH
Confidence 3456677788854333 3323 5688888877666678889944 4677666543 3334556666666666666
Q ss_pred cCCCCHhHHHH-------HHHHHHHhccCCh--HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHc---c-----
Q 003195 125 QYDPDKNVQDA-------MAHIWKSLVADPK--RTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQ---G----- 187 (840)
Q Consensus 125 ~~Dp~~~VR~a-------~~~iw~~Lv~d~~--~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~---~----- 187 (840)
..-|.|.++.. +.++.+++..++. ....+++..=|.--+.+.....|..|.+|...++.|.. |
T Consensus 788 a~~p~~~~~~~~~~p~VHA~NvmkaIf~~~~LS~~~sef~s~Al~lAi~~fs~~~W~~RN~atlLfaALi~RvfGv~~s~ 867 (1417)
T KOG1810|consen 788 AECPLPGEWGEGDEPRVHAMNVMKAIFTSSILSNERSEFQSRALRLAIEGFSHDMWAERNSATLLFAALINRVFGVIRSR 867 (1417)
T ss_pred hcCCCccccCCCcchhhhhHHHHHHHHccchhhHHHHHHHHHHHHHHHHhcCchHHhhhhhHHHHHHHHHHHHHHhhhHH
Confidence 66666664433 4567777766542 23455666666667778888889999999998888774 1
Q ss_pred ------C--CchhhhHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHH
Q 003195 188 ------R--KFDQVGKHLRRIWTAAFRAMD----DIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFL 255 (840)
Q Consensus 188 ------~--~~~~l~~~L~~l~~~l~~~ld----D~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~L 255 (840)
+ +.-.+-..++.+.+.+++.++ +...+-+.. -.++.+.-++.|.-.+... .+..-+....|++
T Consensus 868 ~~~~~r~~~S~~~FFtkyp~L~~~ll~~Less~a~~sgs~q~s--~aL~piLl~LSrL~~~~~~---~~~~~ls~F~p~l 942 (1417)
T KOG1810|consen 868 LCLDHRNRLSGLEFFTKYPTLHPLLLTELESSDAQLSGSEQSS--LALWPILLMLSRLYPSAPR---SATLGLSVFVPFL 942 (1417)
T ss_pred hhcccccccchhhhhhcCccHHHHHHHHhhhhccCCCcccCcc--ccHHHHHHHHHhhcccCCc---cccCCchhhhHHH
Confidence 0 111122335555555555553 111111111 1123322222333221111 1123456678888
Q ss_pred HhcccCCchhHHHHHHHHHHHHHHHh
Q 003195 256 LAEGILSKVDSISKASIGVVMKLVKG 281 (840)
Q Consensus 256 l~~gL~s~~~evr~~al~~L~~la~~ 281 (840)
++ ...++...+|..|..++..++..
T Consensus 943 ~e-ct~q~~~~vRemAs~vl~~L~~~ 967 (1417)
T KOG1810|consen 943 QE-CTCQSNLKVREMASLVLLALVDA 967 (1417)
T ss_pred HH-HHhhhhHHHHHHHHHHHHHHHHH
Confidence 75 34445588999999888888865
No 209
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.81 E-value=60 Score=34.80 Aligned_cols=107 Identities=10% Similarity=0.088 Sum_probs=65.4
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccc
Q 003195 159 FDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTL 238 (840)
Q Consensus 159 l~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~ 238 (840)
+.++...+.+.++.||.+|..-+..+..+ +...+..|-...++.+++.+.|..+ .+.+| .++-+++.-.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~-~alVnlsq~~-------- 73 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP-AEPAA-TALVNLSQKE-------- 73 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc-ccHHH-HHHHHHHhhH--------
Confidence 34567777888999999999877777655 5566777777888888888888877 33333 2222221100
Q ss_pred cccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHH
Q 003195 239 TEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVK 280 (840)
Q Consensus 239 ~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~ 280 (840)
.-.+.+++.++.+++.+ +.++.+......+..+.++++
T Consensus 74 ---~l~~~ll~~~~k~l~~~-~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 74 ---ELRKKLLQDLLKVLMDM-LTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred ---HHHHHHHHHHHHHHHHH-hcCcccchHHHHHHHHHHhcc
Confidence 01233455555555543 344445555666666666654
No 210
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=84.81 E-value=26 Score=41.29 Aligned_cols=181 Identities=9% Similarity=0.113 Sum_probs=116.2
Q ss_pred hhHHHHHHHHHhhhc-CCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhccc
Q 003195 515 LYLGEIVSLICEGIA-SSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHK 593 (840)
Q Consensus 515 ~yl~~Il~~l~~~L~-d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~ 593 (840)
.|..+=+|++...+. .+.+.+|..|.-++|++.-.+.. +.+.....|.+++.+.+-++|...+..+..++-+..-
T Consensus 929 ~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~----~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~ 1004 (1128)
T COG5098 929 EFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT----TADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQL 1004 (1128)
T ss_pred HHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhh----hhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccce
Confidence 456666677777665 79999999999999999865433 4567788899999999999999999999888754321
Q ss_pred ccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCcchHHhHHHHHHhhcccccccCCCCCCCCCCccch
Q 003195 594 DISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTALNKSGQVPLPSDASKE 673 (840)
Q Consensus 594 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 673 (840)
... .+.+. +.+.+.+.+.+...-|=..+.+++. ++..++.-++.|...+..+
T Consensus 1005 KVK----Gqlg~----ma~~L~deda~Isdmar~fft~~a~--KdNt~yn~fidifs~ls~~------------------ 1056 (1128)
T COG5098 1005 KVK----GQLGK----MALLLTDEDAEISDMARHFFTQIAK--KDNTMYNGFIDIFSTLSSD------------------ 1056 (1128)
T ss_pred eec----cchhh----hHhhccCCcchHHHHHHHHHHHHHh--cccchhhhhHHHHHHcCch------------------
Confidence 111 23333 3445556666666666666777765 3445666556666655422
Q ss_pred hhhccccCCchhHHHhhhhhhHHh-hchhhHHHhhhhhHHHHHhhcCCCCChHHHHHHHHhh
Q 003195 674 ESADESVSAPLDKVLDCVSSCIHV-AHVNDIIEQEKNLVQLFTISLSPGFPWTELCSRLQKT 734 (840)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 734 (840)
+|+...+.-.++.+|+..|-. -|.-.+ ...|..-+..|- ....|-++...+-++
T Consensus 1057 ---ae~g~e~fk~II~FLt~fI~kerh~kql---~E~L~~rl~rc~-tq~qwd~~~~~l~nL 1111 (1128)
T COG5098 1057 ---AENGQEPFKLIIGFLTDFISKERHQKQL---KESLFLRLLRCN-TQSQWDKLLCSLFNL 1111 (1128)
T ss_pred ---hhcCCCcHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhh-hhHHHHHHHHHHhcC
Confidence 011112333667776644321 233222 236777777774 667788877776665
No 211
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=84.75 E-value=12 Score=32.67 Aligned_cols=85 Identities=5% Similarity=-0.062 Sum_probs=65.3
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCC
Q 003195 520 IVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAED 599 (840)
Q Consensus 520 Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~ 599 (840)
.++.+...+.|+...+|-.|...|..++.... .-....+.++..+.+.+++...-+=-.++++|++++...+
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p------- 75 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP------- 75 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-------
Confidence 45566778899999999999999999998765 1223578999999999998877777778888888886543
Q ss_pred CCchHHHHHHHHHHHhh
Q 003195 600 PTTPFAIVDMVSSACRK 616 (840)
Q Consensus 600 ~~~~~~i~~~l~~~~~~ 616 (840)
..+++.++++..+
T Consensus 76 ----~~vl~~L~~~y~~ 88 (92)
T PF10363_consen 76 ----DEVLPILLDEYAD 88 (92)
T ss_pred ----HHHHHHHHHHHhC
Confidence 4466666666544
No 212
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.43 E-value=75 Score=41.13 Aligned_cols=192 Identities=17% Similarity=0.147 Sum_probs=119.9
Q ss_pred HHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc-----CChhhhHHHHHHHHHHHhhchhhhhh
Q 003195 400 LLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-----DDKNSQISCAILLKSYSSVASDVLSG 474 (840)
Q Consensus 400 lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~-----~d~~~r~~~~~~i~ai~~~~~~~f~~ 474 (840)
=+..+++-+ .-+++..+..+..-++.++.....+....++++....|. ++..+|...-+++..+.........+
T Consensus 42 el~~I~kkL-~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp 120 (1312)
T KOG0803|consen 42 ELDIIVKKL-LKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSP 120 (1312)
T ss_pred HHHHHHHHH-hccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 344445555 567888888888888888876655555555555444442 45678988888888888888889999
Q ss_pred hHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCC--ChhhHHhhHHHHHHHHHhhh-------------------cCCCH
Q 003195 475 YHAVIVPVIFISRFEDDKYVSDLFEELWEENTSG--DRVTLQLYLGEIVSLICEGI-------------------ASSSW 533 (840)
Q Consensus 475 ~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~--~~~~i~~yl~~Il~~l~~~L-------------------~d~s~ 533 (840)
|++.++|..+.+.+|.+-.|...+.+.+++.-+. .+......-++|...+.+.+ .....
T Consensus 121 ~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~ 200 (1312)
T KOG0803|consen 121 FLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQ 200 (1312)
T ss_pred HHHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhH
Confidence 9999999999999988777765544444332221 11112222344444444332 22345
Q ss_pred HHHHHHHHHHHHHHHHhCcc--hh---hhHHHHH--HHHHHhcCCCCchhHHHHHHHHHHHHHhcc
Q 003195 534 SSKRKSAKAICKLGEILGES--LS---NYHHVLL--ESIMKEVPGRLWEGKDALLYAIGSISTSCH 592 (840)
Q Consensus 534 ~vR~~Aa~~L~~La~~~~~~--l~---~~l~~ll--p~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~ 592 (840)
++..++..++..+....|.. +. +-...++ ..+.+-++++....|...++-+..++....
T Consensus 201 Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~ 266 (1312)
T KOG0803|consen 201 RVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDIL 266 (1312)
T ss_pred HHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhH
Confidence 66777778888887666642 21 1122221 234455567777788888888877776544
No 213
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=84.39 E-value=23 Score=40.74 Aligned_cols=150 Identities=14% Similarity=0.105 Sum_probs=97.4
Q ss_pred HHHHHhhhcCCchHHHHHHHHhccccchh----hhhhHHhHHHHH----HHHhhhhhchhhhhHHHHHHhhcC-------
Q 003195 62 ELCNLANEMGQPDLIYKFMDLANYQVSLN----SKRGAAFGFSKI----AKQAGDALKPHLRLLIPKLVRFQY------- 126 (840)
Q Consensus 62 ~l~~lA~~~g~p~lv~~fm~la~~~~~w~----sr~gA~~~l~~I----~~~~~~~l~~~l~~lvP~L~~~~~------- 126 (840)
-|.+|.+|-|=..|++.|.......-.-| --+.- +-+..+ +....=.++|||.+|+|.++.|.=
T Consensus 227 AL~sL~TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL-~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~ 305 (576)
T KOG2549|consen 227 ALQSLETDSGLQQLLPYFVTFIAEGVSVNIVQNNLELL-IYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLR 305 (576)
T ss_pred HHHhhccCccHHHHHHHHHHHHhhheeeccccccHHHH-HHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCC
Confidence 47778888888889999998663321111 11222 222222 222234789999999999997754
Q ss_pred ---CCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHHHccCCchhhhHHHHHHH
Q 003195 127 ---DPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSR--LWRSREASCLSLADIIQGRKFDQVGKHLRRIW 201 (840)
Q Consensus 127 ---Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~--~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~ 201 (840)
|.+=.+|+-+......++.+....-..--..|...+.+.+.|+ .|-...++...|..|-...-..-+.|.|...+
T Consensus 306 p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~ 385 (576)
T KOG2549|consen 306 PELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYN 385 (576)
T ss_pred ccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHH
Confidence 4455588888777777777665544544566777777777664 58899999888877654222223556777777
Q ss_pred HHHHHHhcccc
Q 003195 202 TAAFRAMDDIK 212 (840)
Q Consensus 202 ~~l~~~ldD~~ 212 (840)
..+...+++..
T Consensus 386 ~~l~~~l~~~~ 396 (576)
T KOG2549|consen 386 ERLQSVLDVES 396 (576)
T ss_pred HHhhhhcccch
Confidence 77777766543
No 214
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=84.31 E-value=33 Score=40.84 Aligned_cols=154 Identities=16% Similarity=0.176 Sum_probs=87.2
Q ss_pred CCHhHHHHHHHHHHHhcc----CC----hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHH
Q 003195 128 PDKNVQDAMAHIWKSLVA----DP----KRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRR 199 (840)
Q Consensus 128 p~~~VR~a~~~iw~~Lv~----d~----~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~ 199 (840)
+++.+|.++.-....++. +. +..++++.+.+...|-.....++-..+.....|||++-... ..+++..
T Consensus 409 ~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~----~i~~l~~ 484 (574)
T smart00638 409 KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPS----SIKVLEP 484 (574)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChh----HHHHHHH
Confidence 366677776555554442 21 12335555666665555555555566788888998873322 2222222
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHH
Q 003195 200 IWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLV 279 (840)
Q Consensus 200 l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la 279 (840)
++. .-.+....+|.+|..+++.++..+ ...+.+.++|++... ....|+|..|+..|+.-
T Consensus 485 ~l~----~~~~~~~~iR~~Av~Alr~~a~~~-------------p~~v~~~l~~i~~n~---~e~~EvRiaA~~~lm~t- 543 (574)
T smart00638 485 YLE----GAEPLSTFIRLAAILALRNLAKRD-------------PRKVQEVLLPIYLNR---AEPPEVRMAAVLVLMET- 543 (574)
T ss_pred hcC----CCCCCCHHHHHHHHHHHHHHHHhC-------------chHHHHHHHHHHcCC---CCChHHHHHHHHHHHhc-
Confidence 221 112456789999988887664321 345667788887642 35578999998887652
Q ss_pred HhhccccccchHHHHHHHHHhcc-CchhHhHHHHHH
Q 003195 280 KGAGIAIRPHLSDLVSCMLESLS-SLEDQGLNYIEL 314 (840)
Q Consensus 280 ~~~g~~l~p~lp~Lv~~Ll~~ls-~~ep~~~~~l~~ 314 (840)
.|-. .++..+.+.+. +...++.+|...
T Consensus 544 -------~P~~-~~l~~ia~~l~~E~~~QV~sfv~S 571 (574)
T smart00638 544 -------KPSV-ALLQRIAELLNKEPNLQVASFVYS 571 (574)
T ss_pred -------CCCH-HHHHHHHHHHhhcCcHHHHHHhHH
Confidence 1322 23444444443 344567666553
No 215
>PF05536 Neurochondrin: Neurochondrin
Probab=84.30 E-value=95 Score=36.69 Aligned_cols=161 Identities=9% Similarity=-0.026 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCH-HHHHHHHHHHHHHHHHhCcchhhhH-HHHHHHHHHhcC
Q 003195 493 YVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSW-SSKRKSAKAICKLGEILGESLSNYH-HVLLESIMKEVP 570 (840)
Q Consensus 493 ~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~-~vR~~Aa~~L~~La~~~~~~l~~~l-~~llp~L~~~l~ 570 (840)
+.+.+...++..++....-.-.+-+-.-+|.+.+.+...+. .+-.-|..+|..++ ..++.-..++ ...+|.|.+.+.
T Consensus 72 ~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~ 150 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIP 150 (543)
T ss_pred HHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHH
Confidence 34556666666665532111123344556777777766665 88888999999999 4444332221 234455555554
Q ss_pred CCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCC---c------ch
Q 003195 571 GRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD---P------KF 641 (840)
Q Consensus 571 ~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~---~------~l 641 (840)
. ...+++.++..+..++...+...|.+....+..++..+.+..+.....-+-.++..|+.+....+. . -.
T Consensus 151 ~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~ 229 (543)
T PF05536_consen 151 N-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWL 229 (543)
T ss_pred h-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhH
Confidence 4 345689999999999887775556544456677888888877665666677888888888877731 1 14
Q ss_pred HHhHHHHHHhhccc
Q 003195 642 FNIIFPLLFEMCGS 655 (840)
Q Consensus 642 ~~~v~~i~~~l~~~ 655 (840)
.++...+...+.++
T Consensus 230 ~~l~~gl~~iL~sr 243 (543)
T PF05536_consen 230 SDLRKGLRDILQSR 243 (543)
T ss_pred HHHHHHHHHHHhcC
Confidence 55555555555555
No 216
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.93 E-value=2.3 Score=42.50 Aligned_cols=92 Identities=14% Similarity=0.060 Sum_probs=72.6
Q ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccC
Q 003195 519 EIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAE 598 (840)
Q Consensus 519 ~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~ 598 (840)
..++++...|.+.+..-|--|-..+-+|....|+.+.|.+++++..|..+|..|.-++++..|+++..+....+ -.-..
T Consensus 114 ~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~-~vG~a 192 (262)
T KOG3961|consen 114 PYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVG-CVGAA 192 (262)
T ss_pred HHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc-ccchh
Confidence 35677778888888889999999999999999999999999999999999999988888888888887765432 01111
Q ss_pred CCCchHHHHHHHH
Q 003195 599 DPTTPFAIVDMVS 611 (840)
Q Consensus 599 ~~~~~~~i~~~l~ 611 (840)
..||..++++.+.
T Consensus 193 LVPfYRQlLp~~n 205 (262)
T KOG3961|consen 193 LVPFYRQLLPVLN 205 (262)
T ss_pred hhhHHHHhhhhhh
Confidence 2367777777554
No 217
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=83.77 E-value=76 Score=35.12 Aligned_cols=66 Identities=8% Similarity=0.088 Sum_probs=43.0
Q ss_pred CchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 003195 372 LNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAA 445 (840)
Q Consensus 372 ~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~ 445 (840)
...|.-|+++|+.+...++ ...+.-+.+-+... .|.+..||+.++..+..+++- +.+.+..+.+.+
T Consensus 38 ~k~k~lasq~ip~~fk~fp----~la~~a~da~~d~~-ed~d~~ir~qaik~lp~fc~~---d~~~rv~d~l~q 103 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFP----SLADEAIDAQLDLC-EDDDVGIRRQAIKGLPLFCKG---DALSRVNDVLVQ 103 (460)
T ss_pred hHHHHHHHHHHHHHHhhCc----hhhhHHHHhhhccc-cccchhhHHHHHhccchhccC---chhhhhHHHHHH
Confidence 3456678888876665544 44566666767776 788899999998888776644 444444444333
No 218
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.36 E-value=96 Score=35.96 Aligned_cols=127 Identities=13% Similarity=0.247 Sum_probs=89.2
Q ss_pred hHHhhHHHHHHHHHhhhcC------------CCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhc--CCCCchhH
Q 003195 512 TLQLYLGEIVSLICEGIAS------------SSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEV--PGRLWEGK 577 (840)
Q Consensus 512 ~i~~yl~~Il~~l~~~L~d------------~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l--~~r~~~~K 577 (840)
.+++|...++..+....+= .-.+.|......+.|++...|.. +-+..+...+ ...+|..-
T Consensus 333 ~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~------e~lk~~~~~l~e~~~~We~~ 406 (559)
T KOG2081|consen 333 IFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSD------ECLKQMYIRLKENNASWEEV 406 (559)
T ss_pred HhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcH------HHHHHHHHHHccCCCchHHH
Confidence 4578888888888876642 22567888999999999888863 1222233333 34579999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCC-cchHHhHHHHHH
Q 003195 578 DALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD-PKFFNIIFPLLF 650 (840)
Q Consensus 578 e~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~-~~l~~~v~~i~~ 650 (840)
|++|-.+..++...... ..+.++++++.+.+.- ....+|..++..+|++.+.+.. ..+.+.|..++.
T Consensus 407 EAaLF~l~~~~~~~~~~----e~~i~pevl~~i~nlp--~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~ 474 (559)
T KOG2081|consen 407 EAALFILRAVAKNVSPE----ENTIMPEVLKLICNLP--EQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIR 474 (559)
T ss_pred HHHHHHHHHHhccCCcc----ccchHHHHHHHHhCCc--cchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 99999999998766542 3367888888887632 2234999999999999998854 245555655544
No 219
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=83.33 E-value=14 Score=35.32 Aligned_cols=122 Identities=13% Similarity=0.139 Sum_probs=79.5
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHH
Q 003195 527 GIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAI 606 (840)
Q Consensus 527 ~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i 606 (840)
.+..++|..= .-|++++.. . ...-...+..|.+++..++..+--..|..|-+++++|+..+..+-. -...
T Consensus 12 ~l~~~dw~~i----l~icD~I~~---~-~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~eva--sk~F 81 (144)
T cd03568 12 KLTSENWGLI----LDVCDKVKS---D-ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVA--SRDF 81 (144)
T ss_pred cCCCcCHHHH----HHHHHHHhc---C-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHh--hHHH
Confidence 4456677432 234444433 2 1234678888999999888888888888888999999975532100 1233
Q ss_pred HHHHHHHHhh-cCHHHHHHHHHHHHHHHHHcCCcchHHhHHHHHHhhcccccc
Q 003195 607 VDMVSSACRK-KIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTAL 658 (840)
Q Consensus 607 ~~~l~~~~~~-~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~~l~~~~~~ 658 (840)
+..+.+.+.+ .+..++..++.++......++++.=...+..+...+...++.
T Consensus 82 l~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L~~~G~~ 134 (144)
T cd03568 82 TQELKKLINDRVHPTVKEKLREVVKQWADEFKNDPSLSLMSDLYKKLKNEGPD 134 (144)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHcCCC
Confidence 3344444444 588999999999999999998754344455666666666544
No 220
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.22 E-value=16 Score=44.86 Aligned_cols=128 Identities=18% Similarity=0.164 Sum_probs=82.5
Q ss_pred hhhhHHhHHHHHHHHhhh----hhchhhhhHHHHHHhhcCC-CCHhHHHHHHHHHHHhccCChHH-----HHHHHHHHHH
Q 003195 91 SKRGAAFGFSKIAKQAGD----ALKPHLRLLIPKLVRFQYD-PDKNVQDAMAHIWKSLVADPKRT-----IDEHLDLIFD 160 (840)
Q Consensus 91 sr~gA~~~l~~I~~~~~~----~l~~~l~~lvP~L~~~~~D-p~~~VR~a~~~iw~~Lv~d~~~~-----i~~~~~~Il~ 160 (840)
+|--|||-|+.|+.+-.. -+++ .++..-+..+.| |.|-.|+=.+=|++.|-.|.... .+..++.
T Consensus 573 qrtmaAFVLAviv~nf~lGQ~acl~~---~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek--- 646 (1387)
T KOG1517|consen 573 QRTMAAFVLAVIVRNFKLGQKACLNG---NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK--- 646 (1387)
T ss_pred HHHHHHHHHHHHHcccchhHHHhccc---cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH---
Confidence 455677888999886421 2232 344444455678 58999998888888887765432 2333444
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHccCC--ch-hhh------------HHHHHHHH----HHHHHhccccHHHHHHHHH
Q 003195 161 DLLIQSGSRLWRSREASCLSLADIIQGRK--FD-QVG------------KHLRRIWT----AAFRAMDDIKETVRTAGDK 221 (840)
Q Consensus 161 ~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~--~~-~l~------------~~L~~l~~----~l~~~ldD~~~~VR~aA~~ 221 (840)
|...+.|+.++||.||..||+.++.... ++ +.. ...++++. .++.+..|..+.||.+..-
T Consensus 647 -L~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v 725 (1387)
T KOG1517|consen 647 -LILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVV 725 (1387)
T ss_pred -HHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHH
Confidence 5666778999999999999999998531 11 100 11223333 5677788999999987554
Q ss_pred HHHH
Q 003195 222 LCRS 225 (840)
Q Consensus 222 ~~~~ 225 (840)
++..
T Consensus 726 ~ls~ 729 (1387)
T KOG1517|consen 726 ALSH 729 (1387)
T ss_pred HHHH
Confidence 4443
No 221
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=83.14 E-value=43 Score=34.82 Aligned_cols=95 Identities=11% Similarity=0.031 Sum_probs=66.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhc-CCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHH
Q 003195 529 ASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEV-PGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIV 607 (840)
Q Consensus 529 ~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l-~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~ 607 (840)
.+..|+...+.+.++.++|...++ +-..+++.+...+ +......+.-.++++..++...- . . .....
T Consensus 94 ~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~v---v----d-~~s~w 161 (234)
T PF12530_consen 94 KDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEV---V----D-FYSAW 161 (234)
T ss_pred CcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhh---c----c-HHHHH
Confidence 356799999999999999998877 4466777777777 56666678888888888884321 1 1 24445
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHcCC
Q 003195 608 DMVSSACRKKIKKYREAAFSCLEQVIKAFRD 638 (840)
Q Consensus 608 ~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~ 638 (840)
+++.+.+ +..+|..-...|.++..-+|.
T Consensus 162 ~vl~~~l---~~~~rp~v~~~l~~l~~l~~~ 189 (234)
T PF12530_consen 162 KVLQKKL---SLDYRPLVLKSLCSLFALVPQ 189 (234)
T ss_pred HHHHHhc---CCccchHHHHHHHHHHHHhcc
Confidence 5565555 456677777766677666654
No 222
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=82.96 E-value=73 Score=34.32 Aligned_cols=73 Identities=12% Similarity=0.103 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHH----HHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 003195 155 LDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLR----RIWTAAFRAMDDIKETVRTAGDKLCRSVT 227 (840)
Q Consensus 155 ~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~----~l~~~l~~~ldD~~~~VR~aA~~~~~~l~ 227 (840)
.+.+|++|-.++..++-.|+.-+|.-++-+++......+...+. .|++.++.+......+|-+||.+.++.++
T Consensus 80 apnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikria 156 (524)
T KOG4413|consen 80 APNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIA 156 (524)
T ss_pred chhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 46788889999988888999999999999999887665555443 67777777777777888888877777664
No 223
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=82.43 E-value=66 Score=36.54 Aligned_cols=257 Identities=10% Similarity=0.043 Sum_probs=137.8
Q ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhc-CCCCchhHHHHHHHHHHHHHhcccccc
Q 003195 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEV-PGRLWEGKDALLYAIGSISTSCHKDIS 596 (840)
Q Consensus 518 ~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l-~~r~~~~Ke~vl~aL~~l~~~~~~~~~ 596 (840)
..++..+...+.+++.+=|......+-.+-.+......-....+-..+.+-. ......|=..+|+-+++++.|+...+.
T Consensus 132 ~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk 211 (409)
T PF01603_consen 132 QKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLK 211 (409)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCc
Confidence 3567777788889999999877777776666554433222344444555444 355678889999999999998764332
Q ss_pred cCCCCchHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHcCCcchHHhH-HHHHHhhcccccccCCCCCCCCCCccchh
Q 003195 597 AEDPTTPFAIVDMVSSACRKK-IKKYREAAFSCLEQVIKAFRDPKFFNII-FPLLFEMCGSTALNKSGQVPLPSDASKEE 674 (840)
Q Consensus 597 ~~~~~~~~~i~~~l~~~~~~~-~~~~R~~Al~~L~~l~~~~~~~~l~~~v-~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 674 (840)
+ .+..-+.+++....+.+ ...|...-..|+..++..=| .+...+ ..++..= -. ++++++
T Consensus 212 ~---eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp--~l~~~~i~~llk~W-P~------------t~s~Ke- 272 (409)
T PF01603_consen 212 E---EHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP--SLAEPVIKGLLKHW-PK------------TNSQKE- 272 (409)
T ss_dssp H---HHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G--GGHHHHHHHHHHHS--S------------S-HHHH-
T ss_pred H---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHhC-CC------------CCchhH-
Confidence 2 23344445555554433 34778888888888886432 333332 2333321 11 111111
Q ss_pred hhccccCCchhHHHhhhhhhHHhhchhhHHHh-hhhhHHHHHhhcCCCCChHHHHHHHHhhhcCCCCCCCccchhHHHHH
Q 003195 675 SADESVSAPLDKVLDCVSSCIHVAHVNDIIEQ-EKNLVQLFTISLSPGFPWTELCSRLQKTLDDSAGTSPHAGISSLIQE 753 (840)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 753 (840)
. .+++-+..++ ...++.-|.+ ...|...+..|+++.+......+ ..++..+.-. .-+...-..
T Consensus 273 -------v---~FL~el~~il-~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErA--l~~w~n~~~~---~li~~~~~~ 336 (409)
T PF01603_consen 273 -------V---LFLNELEEIL-EVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERA--LYFWNNEYFL---SLISQNSRV 336 (409)
T ss_dssp -------H---HHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHH--HGGGGSHHHH---HHHHCTHHH
T ss_pred -------H---HHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHCCHHHH---HHHHhChHH
Confidence 1 3333333222 2345556666 45888899999866665543333 1222111000 001111344
Q ss_pred HHhhhhhhhhhhcccchhhhhhHhhhHHHHHHHHHhhhcccccccccchhhhhHHHHHhhhhHhHH
Q 003195 754 LFHTVSPKVVECISTVKIAQVHISASECLLEICKLFRQISSVYSSNIGIKGELVHQCEMEKNMEAK 819 (840)
Q Consensus 754 ~~~~~~~~~~~~~~~~k~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (840)
++..+.|.+..+.++.=.+.||..|..++.-+. ++.+.+-++..+.|..++.++++
T Consensus 337 i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~----------~~d~~lf~~~~~~~~~~~~~~~~ 392 (409)
T PF01603_consen 337 ILPIIFPALYRNSKNHWNQTVRNLAQNVLKILM----------EMDPKLFDKCAQKYKEKEQKEKA 392 (409)
T ss_dssp HHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHH----------TTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----------HhCHHHHHHHHHHHHHHHHHHHH
Confidence 555566655444434445779988888776543 34555667788888777766554
No 224
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=82.26 E-value=71 Score=36.67 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHH-HHHhhcCC-hhhhHHHHHHHHHHHhhch
Q 003195 414 AAAKRAFASACASVLKYATPSQAQKLIEE-TAALHIDD-KNSQISCAILLKSYSSVAS 469 (840)
Q Consensus 414 ~~Vr~~a~~Alg~l~~~~~~~~~~~li~~-l~~~~~~d-~~~r~~~~~~i~ai~~~~~ 469 (840)
...|-.++.|+|.++...+.+....+... +...+... .-.|..++.++..|++...
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~ 158 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACK 158 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCc
Confidence 45667788888888888777777666665 33333322 3457777888888876653
No 225
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=82.25 E-value=85 Score=34.57 Aligned_cols=202 Identities=16% Similarity=0.136 Sum_probs=114.6
Q ss_pred cHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHH---HHH--------HHHHHHHhhcCChhhhHHHHHHHHHH
Q 003195 396 YTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQ---AQK--------LIEETAALHIDDKNSQISCAILLKSY 464 (840)
Q Consensus 396 ~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~---~~~--------li~~l~~~~~~d~~~r~~~~~~i~ai 464 (840)
|...++..++..+ ..=..+.|+.++...+.+++...+.. ... ++..++..| ++++.-..++..+...
T Consensus 73 ~~~dll~~Li~~L-~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy-~~~dial~~g~mlRec 150 (335)
T PF08569_consen 73 YRSDLLYLLIRNL-PKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY-ENPDIALNCGDMLREC 150 (335)
T ss_dssp HHHTHHHHHHHTG-GGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG-GSTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHh-hhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh-cCccccchHHHHHHHH
Confidence 5556777777777 45568899999999999887643321 122 223333334 4556556666666665
Q ss_pred Hhhch---hhh-hhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChh----hHHhhHHHHHHHHHhhhcCCCHHHH
Q 003195 465 SSVAS---DVL-SGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRV----TLQLYLGEIVSLICEGIASSSWSSK 536 (840)
Q Consensus 465 ~~~~~---~~f-~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~----~i~~yl~~Il~~l~~~L~d~s~~vR 536 (840)
+++-. -.+ .+++.. +|.....+.=+|..-+...+.++...... -+..+.+.++....+.+.+++.-+|
T Consensus 151 ~k~e~l~~~iL~~~~f~~----ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 151 IKHESLAKIILYSECFWK----FFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp TTSHHHHHHHHTSGGGGG----HHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HhhHHHHHHHhCcHHHHH----HHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 55311 000 111111 22233333333443222333443322222 3345567888888899999999999
Q ss_pred HHHHHHHHHHHHHhCc-c-hhhh--HHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHH
Q 003195 537 RKSAKAICKLGEILGE-S-LSNY--HHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSS 612 (840)
Q Consensus 537 ~~Aa~~L~~La~~~~~-~-l~~~--l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~ 612 (840)
+++.+.||++...... . ...| =+.-+..+..-|++++-+.+-.+++.+--++.+-.+ .+.|..++.+
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K---------~~~I~~iL~~ 297 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK---------PPPIVDILIK 297 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS----------BHHHHHHHHH
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC---------ChHHHHHHHH
Confidence 9999999999975432 1 1223 255666777788888888888888888777754322 2556665543
No 226
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=81.77 E-value=14 Score=36.11 Aligned_cols=124 Identities=16% Similarity=0.257 Sum_probs=75.2
Q ss_pred chHHHHHHHhhhcCCchHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhc---h---h---h-hhHHHHHHhhcCC
Q 003195 58 STYKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALK---P---H---L-RLLIPKLVRFQYD 127 (840)
Q Consensus 58 styk~l~~lA~~~g~p~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~---~---~---l-~~lvP~L~~~~~D 127 (840)
.-+++||+|+..-++++--+.++.. ...+|.=+.--+..+.+..|..+. . . + ..+.|.|++....
T Consensus 10 ~vf~~Lc~L~~~~~~~~~~~~~~~~-----~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~ 84 (168)
T PF12783_consen 10 LVFRDLCSLSSKPSDPGNSPDFLSH-----DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSS 84 (168)
T ss_pred HHHHHHHHHhCCCCCCCCCcchhhh-----hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 3467888888655555333333221 122222222233566676666555 1 1 1 3788999988887
Q ss_pred CCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh-CCC--ChhHHHHHHHHHHHHHc
Q 003195 128 PDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQS-GSR--LWRSREASCLSLADIIQ 186 (840)
Q Consensus 128 p~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l-~~~--~wrvR~aac~Al~~Ll~ 186 (840)
+++.|=..+.++...+.......+...++.+++.++..+ .++ .+..|+.+..++..+..
T Consensus 85 ~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 85 SDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 878888888888777775554455555566666666532 222 34589999999988875
No 227
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=81.74 E-value=15 Score=44.24 Aligned_cols=108 Identities=17% Similarity=0.158 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHHHHHHh-Cc-------------chhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccc
Q 003195 531 SSWSSKRKSAKAICKLGEIL-GE-------------SLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDIS 596 (840)
Q Consensus 531 ~s~~vR~~Aa~~L~~La~~~-~~-------------~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~ 596 (840)
.+..+|.+|..++|.++..+ .. ....+.+.+...|..+......+.|...|.||+.+..
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~------- 519 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH------- 519 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------
T ss_pred CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-------
Confidence 46789999999999999653 22 1122445555555555555555667777777776631
Q ss_pred cCCCCchHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHcCCcchHHhHHHHHHhhc
Q 003195 597 AEDPTTPFAIVDMVSSACR---KKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMC 653 (840)
Q Consensus 597 ~~~~~~~~~i~~~l~~~~~---~~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~~l~ 653 (840)
+.+++.+..-+. ......|..|+.+|.++....+. .+.+++.+|...-.
T Consensus 520 -------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~-~v~~~l~~I~~n~~ 571 (618)
T PF01347_consen 520 -------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE-KVREILLPIFMNTT 571 (618)
T ss_dssp -------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH-HHHHHHHHHHH-TT
T ss_pred -------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH-HHHHHHHHHhcCCC
Confidence 233444444333 33679999999999988665543 56777777777443
No 228
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=81.67 E-value=84 Score=37.41 Aligned_cols=120 Identities=15% Similarity=0.066 Sum_probs=69.6
Q ss_pred hHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcch--------hhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 003195 516 YLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESL--------SNYHHVLLESIMKEVPGRLWEGKDALLYAIGSI 587 (840)
Q Consensus 516 yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l--------~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l 587 (840)
++..+.+++...-.-.+..+|.+|..+++.++..+-..- ..+.+.+...|.++.+.++.+.+-..|+||+.+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 344444444332223467899999999999997543221 123333333444444444444555666666644
Q ss_pred HHhcccccccCCCCchHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHcCCcchHHhHHHHHH
Q 003195 588 STSCHKDISAEDPTTPFAIVDMVSSACR---KKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLF 650 (840)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~ 650 (840)
. .+.+++.+..-+. ..+...|..|+.+|..++...|. .+.+++.++..
T Consensus 474 g--------------~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~-~v~~~l~~i~~ 524 (574)
T smart00638 474 G--------------HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR-KVQEVLLPIYL 524 (574)
T ss_pred C--------------ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch-HHHHHHHHHHc
Confidence 2 1333333333222 34678999999999999887665 56666666665
No 229
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=81.55 E-value=28 Score=40.80 Aligned_cols=108 Identities=19% Similarity=0.092 Sum_probs=76.0
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHH-HHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhh
Q 003195 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLD-LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVG 194 (840)
Q Consensus 116 ~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~-~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~ 194 (840)
.++|-| .||..+|..++..++..+|=+...-...++. ..++.+.+.+.+++..+|..+.++|-+++-+...+...
T Consensus 423 plvqll----~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~ 498 (678)
T KOG1293|consen 423 PLVQLL----MDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKF 498 (678)
T ss_pred HHHHHh----hCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHH
Confidence 345554 9999999999877666665433222233322 25555777888999999999999999998877655444
Q ss_pred HHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHH
Q 003195 195 KHLRRIWTAAFR-AMDDIKETVRTAGDKLCRSVT 227 (840)
Q Consensus 195 ~~L~~l~~~l~~-~ldD~~~~VR~aA~~~~~~l~ 227 (840)
..+.++....+- ...|+...|.+.+..+++++.
T Consensus 499 ~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 499 QLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 555555554433 357999999999999888873
No 230
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=81.48 E-value=2 Score=31.59 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=27.2
Q ss_pred HHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHH
Q 003195 98 GFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHI 139 (840)
Q Consensus 98 ~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~i 139 (840)
+++.+.+.-+.-+. -+.+...+.+++.|+.|.||+|+.+.
T Consensus 2 ~l~~iv~~dp~ll~--~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLD--SSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccc--hHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 35555554434332 13577777788899999999998764
No 231
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=81.21 E-value=14 Score=38.97 Aligned_cols=114 Identities=15% Similarity=0.236 Sum_probs=76.7
Q ss_pred chHHHHHHHhhhcCCc-------hHHHHHHHHhccc-cch--hhhhhHH--hHHHHHHHHhhhhhchhhhhHHHHHHhhc
Q 003195 58 STYKELCNLANEMGQP-------DLIYKFMDLANYQ-VSL--NSKRGAA--FGFSKIAKQAGDALKPHLRLLIPKLVRFQ 125 (840)
Q Consensus 58 styk~l~~lA~~~g~p-------~lv~~fm~la~~~-~~w--~sr~gA~--~~l~~I~~~~~~~l~~~l~~lvP~L~~~~ 125 (840)
.+|..+|.--..-++| ..+...+....+. +.- ..||+|- |.+.+|+......-++.++..+..|++.-
T Consensus 119 ~~f~~lc~~l~~~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia 198 (255)
T PF10350_consen 119 PGFTALCRRLWSSNNPELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIA 198 (255)
T ss_pred HHHHHHHHHHhcCCCchHHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHh
Confidence 3444455444433444 3566666666554 322 5778665 66677776543322277888999999888
Q ss_pred CCCCHh--------HHHHHHHHHHHhccCCh--HHHHHHHHHHHHHHHHhhCCCCh
Q 003195 126 YDPDKN--------VQDAMAHIWKSLVADPK--RTIDEHLDLIFDDLLIQSGSRLW 171 (840)
Q Consensus 126 ~Dp~~~--------VR~a~~~iw~~Lv~d~~--~~i~~~~~~Il~~Ll~~l~~~~w 171 (840)
..|... -|-=+.+|.++++.|.+ ..+..|+.+.+.--+.++.++.|
T Consensus 199 ~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~s~~W 254 (255)
T PF10350_consen 199 KSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGFSSPDW 254 (255)
T ss_pred cCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 887653 34346889999998864 46677888888888999999998
No 232
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=81.08 E-value=62 Score=33.96 Aligned_cols=58 Identities=7% Similarity=0.078 Sum_probs=40.5
Q ss_pred HHHHHhhhcC--CCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHH
Q 003195 521 VSLICEGIAS--SSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSIS 588 (840)
Q Consensus 521 l~~l~~~L~d--~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~ 588 (840)
++.+.+.|.| .+.=||+-||.+||.++. +.-++.|.+-+.+...-+++..--||-.+-
T Consensus 220 i~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 220 IPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred hHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 4555555555 467799999999998875 345677777777766666777766665543
No 233
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.04 E-value=1.3e+02 Score=35.91 Aligned_cols=163 Identities=16% Similarity=0.172 Sum_probs=98.1
Q ss_pred hhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHH
Q 003195 466 SVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICK 545 (840)
Q Consensus 466 ~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~ 545 (840)
+.+.+..+.|.+.++-. .+.+.|-.+|.-..+++=.++.. .....|+.-++++|...+..+|+--+.=++-
T Consensus 360 ~~s~davK~h~d~Ii~s---LkterDvSirrravDLLY~mcD~------~Nak~IV~elLqYL~tAd~sireeivlKvAI 430 (938)
T KOG1077|consen 360 EFSIDAVKKHQDTIINS---LKTERDVSIRRRAVDLLYAMCDV------SNAKQIVAELLQYLETADYSIREEIVLKVAI 430 (938)
T ss_pred cchHHHHHHHHHHHHHH---hccccchHHHHHHHHHHHHHhch------hhHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 34455566665544432 23467778887666665454443 3567788888888888999999999988999
Q ss_pred HHHHhCcchhhhHHHHHHHHHHhcC---CCCch-----------hH----HHHHHHHHH-------------HHHhcccc
Q 003195 546 LGEILGESLSNYHHVLLESIMKEVP---GRLWE-----------GK----DALLYAIGS-------------ISTSCHKD 594 (840)
Q Consensus 546 La~~~~~~l~~~l~~llp~L~~~l~---~r~~~-----------~K----e~vl~aL~~-------------l~~~~~~~ 594 (840)
|++++..++.-|+..++..+--+-. +.-|- .. +.++++|-. +.--++.-
T Consensus 431 LaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~L 510 (938)
T KOG1077|consen 431 LAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNL 510 (938)
T ss_pred HHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhh
Confidence 9999999998888888877643331 11231 11 112222211 11111111
Q ss_pred cccCCCC-chHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCC
Q 003195 595 ISAEDPT-TPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD 638 (840)
Q Consensus 595 ~~~~~~~-~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~ 638 (840)
+ ..++. ........+++-..-.+...|.--+..+-+|+..+|+
T Consensus 511 I-a~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~PE 554 (938)
T KOG1077|consen 511 I-ADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFPE 554 (938)
T ss_pred h-cCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhChh
Confidence 1 11111 2334455566655555778888888888888887765
No 234
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=80.89 E-value=15 Score=37.10 Aligned_cols=68 Identities=13% Similarity=0.053 Sum_probs=51.8
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhccc
Q 003195 526 EGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHK 593 (840)
Q Consensus 526 ~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~ 593 (840)
..|+-..-..-......++.+..++|....+++..++..|-+--....++.|..+=.++++.++..|.
T Consensus 7 ~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGp 74 (198)
T PF08161_consen 7 SLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGP 74 (198)
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCH
Confidence 33433333455566778888888888887777888888887777777788999999999999998885
No 235
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=80.13 E-value=1.1e+02 Score=34.66 Aligned_cols=90 Identities=12% Similarity=0.080 Sum_probs=59.1
Q ss_pred HHHHHHHhcCCC-hhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCC---CC
Q 003195 498 FEELWEENTSGD-RVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPG---RL 573 (840)
Q Consensus 498 ~~~i~~~~~~~~-~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~---r~ 573 (840)
|.+..+++.... +..+......+...+.++++|++..|-..|...+.+=--. ..+..+-..++|.+..++.. .-
T Consensus 275 FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~--~li~~~~~~i~p~i~~~L~~~~~~H 352 (409)
T PF01603_consen 275 FLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFL--SLISQNSRVILPIIFPALYRNSKNH 352 (409)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHH--HHHHCTHHHHHHHHHHHHSSTTSS-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHH--HHHHhChHHHHHHHHHHHHHHHHHH
Confidence 444455555533 3567788899999999999999999999888776532110 12334556677777776632 34
Q ss_pred ch--hHHHHHHHHHHHHH
Q 003195 574 WE--GKDALLYAIGSIST 589 (840)
Q Consensus 574 ~~--~Ke~vl~aL~~l~~ 589 (840)
|+ +|..+..++..+..
T Consensus 353 Wn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 353 WNQTVRNLAQNVLKILME 370 (409)
T ss_dssp SSTTHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 65 67777777777664
No 236
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=79.49 E-value=13 Score=35.27 Aligned_cols=121 Identities=15% Similarity=0.176 Sum_probs=75.4
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCC
Q 003195 522 SLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPT 601 (840)
Q Consensus 522 ~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~ 601 (840)
.+....+.+++|.. ..-|.+++... .......+..|.+++..++..+..-+|..+-.++.+|+..+..+..
T Consensus 12 kATs~~~~~~Dw~~----~l~icD~i~~~----~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~- 82 (140)
T PF00790_consen 12 KATSESLPSPDWSL----ILEICDLINSS----PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVA- 82 (140)
T ss_dssp HHT-TTSSS--HHH----HHHHHHHHHTS----TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHT-
T ss_pred HHhCcCCCCCCHHH----HHHHHHHHHcC----CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHh-
Confidence 34444566677743 33455555543 2234778889999999988888888899999999999875532100
Q ss_pred chHHHHHHHHHHHhhc-CHH---HHHHHHHHHHHHHHHcCCcchHHhHHHHHHhh
Q 003195 602 TPFAIVDMVSSACRKK-IKK---YREAAFSCLEQVIKAFRDPKFFNIIFPLLFEM 652 (840)
Q Consensus 602 ~~~~i~~~l~~~~~~~-~~~---~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~~l 652 (840)
-...+..+.+.++.+ ... +|+.++..+......|+++.-+..+......+
T Consensus 83 -~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i~~~y~~L 136 (140)
T PF00790_consen 83 -SKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLIQDTYKRL 136 (140)
T ss_dssp -SHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHHHHHHHHH
Confidence 123444555544432 223 89999999999999997644333333444433
No 237
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=79.17 E-value=1.4e+02 Score=38.71 Aligned_cols=216 Identities=11% Similarity=0.082 Sum_probs=103.7
Q ss_pred cHHHHHHHHHHHHHhhhcCCHH-------HHHHHHHHHHHhhcCC-hhhhHHHHHHHHHHHhhchhhhhhhHhhHh---H
Q 003195 413 SAAAKRAFASACASVLKYATPS-------QAQKLIEETAALHIDD-KNSQISCAILLKSYSSVASDVLSGYHAVIV---P 481 (840)
Q Consensus 413 ~~~Vr~~a~~Alg~l~~~~~~~-------~~~~li~~l~~~~~~d-~~~r~~~~~~i~ai~~~~~~~f~~~~~~ll---P 481 (840)
+..+|+++..||-.|. +++. ....+|+-++..+.++ ++..++++.+|..++-.+-...+..+..+. -
T Consensus 364 ~~aLRrYa~MALTNLT--FGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVta 441 (2195)
T KOG2122|consen 364 CNALRRYAGMALTNLT--FGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTA 441 (2195)
T ss_pred HHHHHHHHHHHhhccc--cccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHH
Confidence 4567777777776654 2221 1345666666666544 467778888888887665444444443332 2
Q ss_pred HHHHhhcCC-chHHHHHHHHHHHHhcCCC--hhhH---HhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCc--c
Q 003195 482 VIFISRFED-DKYVSDLFEELWEENTSGD--RVTL---QLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE--S 553 (840)
Q Consensus 482 ~l~~~~~d~-d~~vr~~~~~i~~~~~~~~--~~~i---~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~--~ 553 (840)
+..-.++.. +-.++.....+|.--.... ..+| .--+.-++.++.---.+..-.+-.+|...|..+...+.. .
T Consensus 442 La~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~ 521 (2195)
T KOG2122|consen 442 LAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCED 521 (2195)
T ss_pred HHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccch
Confidence 222233332 2347777777785422111 1111 111222233222222334445555555555555543321 1
Q ss_pred hhhh--HHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhccc---ccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHH
Q 003195 554 LSNY--HHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHK---DISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSC 628 (840)
Q Consensus 554 l~~~--l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~---~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~ 628 (840)
..+. -...+..|++-|+..+..+---.+-+|-.|...+.. .+|. .--+..+...+..++...-+.+..+
T Consensus 522 yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD------~gAv~mLrnLIhSKhkMIa~GSaaA 595 (2195)
T KOG2122|consen 522 YRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWD------DGAVPMLRNLIHSKHKMIAMGSAAA 595 (2195)
T ss_pred HHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHh------cccHHHHHHHHhhhhhhhhhhHHHH
Confidence 1111 134556667777666544333334444444433321 1221 0112233334445666777777778
Q ss_pred HHHHHHHc
Q 003195 629 LEQVIKAF 636 (840)
Q Consensus 629 L~~l~~~~ 636 (840)
|..++...
T Consensus 596 LrNLln~R 603 (2195)
T KOG2122|consen 596 LRNLLNFR 603 (2195)
T ss_pred HHHHhcCC
Confidence 88877654
No 238
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=78.09 E-value=22 Score=33.92 Aligned_cols=119 Identities=12% Similarity=0.112 Sum_probs=76.8
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccC--CCCchH
Q 003195 527 GIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAE--DPTTPF 604 (840)
Q Consensus 527 ~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~--~~~~~~ 604 (840)
.+.+++|..=. -|.+++..-.. .-...+..|.+++..++..+.--.|..|-.++++|+..+..+ ...|++
T Consensus 16 ~l~~~dw~~il----eicD~In~~~~----~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~ 87 (142)
T cd03569 16 LLGEPDLASIL----EICDMIRSKDV----QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMD 87 (142)
T ss_pred ccCccCHHHHH----HHHHHHhCCCC----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 44556775422 34444443211 236678888999988888887778888888999998755321 123455
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCcchHHhHHHHHHhhcccc
Q 003195 605 AIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGST 656 (840)
Q Consensus 605 ~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~~l~~~~ 656 (840)
.+++.+.. ..+..+|..++..+......++++.=...+......+...+
T Consensus 88 ~l~~l~~~---~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L~~~G 136 (142)
T cd03569 88 ELKDLIKT---TKNEEVRQKILELIQAWALAFRNKPQLKYVVDTYQILKAEG 136 (142)
T ss_pred HHHHHHcc---cCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHcC
Confidence 55554433 45789999999999999999987533334445555555443
No 239
>PF05536 Neurochondrin: Neurochondrin
Probab=77.97 E-value=1.5e+02 Score=34.97 Aligned_cols=183 Identities=14% Similarity=0.085 Sum_probs=111.3
Q ss_pred hhhHHHHHHHHHHHhhchhhhh--hhHhhHhHHHHHhhcCCch-HHHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHHhh
Q 003195 452 NSQISCAILLKSYSSVASDVLS--GYHAVIVPVIFISRFEDDK-YVSDLFEELWEENTSGDRVTLQLYL-GEIVSLICEG 527 (840)
Q Consensus 452 ~~r~~~~~~i~ai~~~~~~~f~--~~~~~llP~l~~~~~d~d~-~vr~~~~~i~~~~~~~~~~~i~~yl-~~Il~~l~~~ 527 (840)
..+..+..++.+++. .+.+. +-+-.-+|.+.......+. ++..-+.+++..+++.. .+-+..+ ..-++.+.+.
T Consensus 72 ~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~-~G~~aLl~~g~v~~L~ei 148 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSP-EGAKALLESGAVPALCEI 148 (543)
T ss_pred HHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCc-HhHHHHHhcCCHHHHHHH
Confidence 345556667777765 33332 3333357777665544333 54444445555555432 2222221 2334444444
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhCcch----hhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccc-c-ccCCCC
Q 003195 528 IASSSWSSKRKSAKAICKLGEILGESL----SNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKD-I-SAEDPT 601 (840)
Q Consensus 528 L~d~s~~vR~~Aa~~L~~La~~~~~~l----~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~-~-~~~~~~ 601 (840)
+.+ +...+..|.+.+..++...+... ...+..+++.+-+.+....-..|-.+++-|..+...+... . ....+.
T Consensus 149 ~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~ 227 (543)
T PF05536_consen 149 IPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPK 227 (543)
T ss_pred HHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhh
Confidence 444 56678889999999888766322 2235677777777776655556888899999998877311 1 111234
Q ss_pred chHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHcCC
Q 003195 602 TPFAIVDMVSSACRK-KIKKYREAAFSCLEQVIKAFRD 638 (840)
Q Consensus 602 ~~~~i~~~l~~~~~~-~~~~~R~~Al~~L~~l~~~~~~ 638 (840)
....+.+.+..-++. -.+..|..|+.+...+++.++.
T Consensus 228 W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~ 265 (543)
T PF05536_consen 228 WLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGP 265 (543)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh
Confidence 567777777776554 4789999999999999998754
No 240
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.44 E-value=13 Score=45.57 Aligned_cols=156 Identities=8% Similarity=0.009 Sum_probs=93.3
Q ss_pred HhHHHHHhhcCCchHHHHHHHHHHHHhcCCCh-hhHHhhHHHHHHHHHhhhcC---CCHHHHHHHHHHHHHHHHHhCcch
Q 003195 479 IVPVIFISRFEDDKYVSDLFEELWEENTSGDR-VTLQLYLGEIVSLICEGIAS---SSWSSKRKSAKAICKLGEILGESL 554 (840)
Q Consensus 479 llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~-~~i~~yl~~Il~~l~~~L~d---~s~~vR~~Aa~~L~~La~~~~~~l 554 (840)
+.|+++...+..-.|+|....=+|..+...-+ -.+...-+..-..+.+.+.+ -+.+.|-.||..|+.++..+.-.=
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ 592 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQ 592 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhH
Confidence 67888888888888998877777766543211 11111111111122223333 245889999999999997643211
Q ss_pred h-hhHHHHHHHHHHhcCCC-CchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 003195 555 S-NYHHVLLESIMKEVPGR-LWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQV 632 (840)
Q Consensus 555 ~-~~l~~llp~L~~~l~~r-~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l 632 (840)
. -.-..++.++..-+.+. .|--|.=++-.|+-|-+.....-|. .....-...+...++++-+++|.+|+.+||.|
T Consensus 593 ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~---G~r~~AhekL~~~LsD~vpEVRaAAVFALgtf 669 (1387)
T KOG1517|consen 593 KACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWS---GRRDNAHEKLILLLSDPVPEVRAAAVFALGTF 669 (1387)
T ss_pred HHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhc---cccccHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 1 11245677777777663 4544555555555554444333222 12222334466677888999999999999999
Q ss_pred HHHcC
Q 003195 633 IKAFR 637 (840)
Q Consensus 633 ~~~~~ 637 (840)
+....
T Consensus 670 l~~~~ 674 (1387)
T KOG1517|consen 670 LSNGS 674 (1387)
T ss_pred hcccc
Confidence 98753
No 241
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=76.04 E-value=23 Score=37.51 Aligned_cols=147 Identities=12% Similarity=0.144 Sum_probs=81.8
Q ss_pred CccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc-------CChhhhHHHHHHHHHH
Q 003195 392 DIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-------DDKNSQISCAILLKSY 464 (840)
Q Consensus 392 ~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~-------~d~~~r~~~~~~i~ai 464 (840)
++.-|.++++..++ ++.+...|.++..++ -++.-+..++++.+..+. .|-..-.++...+.++
T Consensus 194 ELq~YF~kvisal~----dEs~~~~r~aAl~sL------r~dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sL 263 (450)
T COG5095 194 ELQMYFDKVISALL----DESDEQTRDAALESL------RNDSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSL 263 (450)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHh------ccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 44557777777773 445677787777665 233345566666555442 1222234455555555
Q ss_pred HhhchhhhhhhHhhHhHHHHHh---h---cCCch----HHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCC--C
Q 003195 465 SSVASDVLSGYHAVIVPVIFIS---R---FEDDK----YVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASS--S 532 (840)
Q Consensus 465 ~~~~~~~f~~~~~~llP~l~~~---~---~d~d~----~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~--s 532 (840)
.+.-.-...||..+++|-++.+ + .++++ .+|..+..++.-.....+...+..-|.+...+++..-|. .
T Consensus 264 L~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~ 343 (450)
T COG5095 264 LKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKT 343 (450)
T ss_pred hcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccc
Confidence 5543333479999999987653 2 22222 267776666655554444443444455555555554442 3
Q ss_pred HHHHHHHHHHHHHHHH
Q 003195 533 WSSKRKSAKAICKLGE 548 (840)
Q Consensus 533 ~~vR~~Aa~~L~~La~ 548 (840)
......|.+++..+.+
T Consensus 344 ~sT~YGalkgls~l~k 359 (450)
T COG5095 344 ESTQYGALKGLSILSK 359 (450)
T ss_pred cchhhhhhhhhhhhch
Confidence 4555666677766654
No 242
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.05 E-value=59 Score=42.08 Aligned_cols=130 Identities=16% Similarity=0.085 Sum_probs=74.9
Q ss_pred HHHHHHHHHH-hhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh
Q 003195 155 LDLIFDDLLI-QSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRL 233 (840)
Q Consensus 155 ~~~Il~~Ll~-~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~ 233 (840)
.+.+++.+.. ...+..||+|-+...=+...+-...+.-.+..-.+|+..++..+.|..-.||+.|...+..+.. .
T Consensus 1524 ~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~----~ 1599 (1710)
T KOG1851|consen 1524 QPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQ----G 1599 (1710)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHh----c
Confidence 4566666663 3355679999996655544443333333445566999999999999988899998877766632 1
Q ss_pred hhccccccchHHhHHHhHHHHHHhcccCC--chhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcc
Q 003195 234 CDVTLTEISDARQSMDIVLPFLLAEGILS--KVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLS 302 (840)
Q Consensus 234 ~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s--~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls 302 (840)
..... .. +..-+.- ++..+ .+......+...|++++-..+-.+ |.-+|..+..++
T Consensus 1600 s~~~~-----~~---~k~d~~~--~~~~s~s~~~i~~HgavlgLgA~VlafPy~v----P~wip~~L~~Ls 1656 (1710)
T KOG1851|consen 1600 SKFQF-----VS---DKRDTTS--NILQSKSKDEIKAHGAVLGLGAIVLAFPYVV----PLWIPKPLMNLS 1656 (1710)
T ss_pred ccccc-----ch---Hhhhhhh--hhhhhcchHHHHhhhhHHHHHHHHHhccccc----hhhhHHHHHHHH
Confidence 11000 00 1112221 12222 223344567888999887665544 444555555554
No 243
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=74.77 E-value=76 Score=33.35 Aligned_cols=235 Identities=17% Similarity=0.207 Sum_probs=119.0
Q ss_pred ceeecCChhhHHHHHHHHHHHhccCCccccccccccCcccccC-C-cccccCCCCccch-HHHHHHHhhhcCCchHHHHH
Q 003195 3 VVYELGDASMKQNLVDALVTTLTGSGKRKRTVKLAEDSEVFQE-G-AIGEGLGGGKLST-YKELCNLANEMGQPDLIYKF 79 (840)
Q Consensus 3 ~vy~~~~~~~~~~lv~~l~~~~~~~~~~~~~~~~~~~t~~f~~-g-~~~~~~~~~~~st-yk~l~~lA~~~g~p~lv~~f 79 (840)
+|.|+.+++.|+.=+..|.+.--. |+. | .|=. .-|.+++ .+||.+.--.+..|.+-.
T Consensus 2 ~i~~L~~~~~Re~Al~eLsk~r~~----------------~~~La~~LW~--s~G~i~~LLqEIisiYp~l~~~~Lt~-- 61 (262)
T PF04078_consen 2 LILDLCNPETRENALLELSKKRES----------------FPDLAPLLWH--SFGTIAALLQEIISIYPALSPPNLTA-- 61 (262)
T ss_dssp HHHHTSSHHHHHHHHHHHHHTCCC-----------------TTHHHHHHT--STTHHHHHHHHHHGGGGGTTTT---H--
T ss_pred hhHHhcCcchHHHHHHHHHHhhhc----------------ccchhHHHHc--CCChHHHHHHHHHHHcccCCCcccCH--
Confidence 577889999999888887642211 211 0 0100 1122222 345554444444443211
Q ss_pred HHHhccccchhhhhhHHhHH-HHHHHHhh---hhhchhhh-hHHHHHHhhcC-CCCHhHHHHHHHHHHHhccCChHHHHH
Q 003195 80 MDLANYQVSLNSKRGAAFGF-SKIAKQAG---DALKPHLR-LLIPKLVRFQY-DPDKNVQDAMAHIWKSLVADPKRTIDE 153 (840)
Q Consensus 80 m~la~~~~~w~sr~gA~~~l-~~I~~~~~---~~l~~~l~-~lvP~L~~~~~-Dp~~~VR~a~~~iw~~Lv~d~~~~i~~ 153 (840)
.-..|--.+.++ ..++++.. ..++.+++ -++|.|=..-. -|...+|=+...++++|++.....+-.
T Consensus 62 --------~~snRVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~ 133 (262)
T PF04078_consen 62 --------RQSNRVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVIS 133 (262)
T ss_dssp --------HHHHHHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHH
Confidence 112333445555 67777652 24444444 57777754333 356889999999999999754333444
Q ss_pred HH--HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccC--------CchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHH
Q 003195 154 HL--DLIFDDLLIQSGSRLWRSREASCLSLADIIQGR--------KFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLC 223 (840)
Q Consensus 154 ~~--~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~--------~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~ 223 (840)
++ .+|+|-.+..|...+--.+..|..-+.-++... ..+.+. .+..++......| ++.-..+++
T Consensus 134 fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~-av~~vL~~mV~~l------~~~pS~RLL 206 (262)
T PF04078_consen 134 FLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFF-AVAMVLNKMVEQL------VKQPSPRLL 206 (262)
T ss_dssp HHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHH-HHHHHHHHHHHHH------HHS--HHHH
T ss_pred HHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHH-HHHHHHHHHHHHH------ccCCChhHH
Confidence 54 458888898887766677777776666655421 111111 1112222111111 122233566
Q ss_pred HHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcc----cCCchhHHHHHHHHHHHH
Q 003195 224 RSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEG----ILSKVDSISKASIGVVMK 277 (840)
Q Consensus 224 ~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~g----L~s~~~evr~~al~~L~~ 277 (840)
+.+...-.|.++.. .+.+.+...+|..+..| +..++..+|..--+.+.+
T Consensus 207 KhIIrCYlRLsdnp-----rar~aL~~~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~n 259 (262)
T PF04078_consen 207 KHIIRCYLRLSDNP-----RAREALRQCLPDQLRDGTFSNILKDDPSTKRWLQQLLSN 259 (262)
T ss_dssp HHHHHHHHHHTTST-----THHHHHHHHS-GGGTSSTTTTGGCS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCH-----HHHHHHHHhCcHHHhcHHHHHHHhcCHHHHHHHHHHHHH
Confidence 66666666776542 46677888888765422 222455566555444443
No 244
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.07 E-value=19 Score=38.42 Aligned_cols=64 Identities=13% Similarity=0.075 Sum_probs=46.7
Q ss_pred HhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcc
Q 003195 122 VRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQG 187 (840)
Q Consensus 122 ~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~ 187 (840)
.-+.+||+|.||.++..+.-.+...+-....++-...++++.+.+.+... .+. |+.|++++.+.
T Consensus 9 v~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~-~~~-a~~alVnlsq~ 72 (353)
T KOG2973|consen 9 VELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP-AEP-AATALVNLSQK 72 (353)
T ss_pred HHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc-ccH-HHHHHHHHHhh
Confidence 33459999999999987777777655456666767788888888877666 344 45578888664
No 245
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=73.84 E-value=3.4e+02 Score=36.90 Aligned_cols=277 Identities=11% Similarity=0.077 Sum_probs=135.6
Q ss_pred CchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHH
Q 003195 262 SKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWD 341 (840)
Q Consensus 262 s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~e 341 (840)
+.+.++|...++++.+|+...+..++.=+..++..|-.+..+..+..+... ++..+ .
T Consensus 1194 s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lA-------------Fetl~----------~ 1250 (1780)
T PLN03076 1194 SNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLA-------------FEIIE----------K 1250 (1780)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHH-------------HHHHH----------H
Confidence 345699999999999999999988888888888888877665444332211 11110 0
Q ss_pred HHHHHHhhcC---hhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccC-ccccHHHHHHHHHHhHhhcC-cHHH
Q 003195 342 TLDLCINVVD---TESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMD-IKPYTSMLLRLLFPVVKEEK-SAAA 416 (840)
Q Consensus 342 al~~~~~~~d---~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~-~~p~~~~lL~~Ll~~l~~d~-~~~V 416 (840)
.+.+...++- .+.+..++--+.+..+...+.+.-..|++.+..++..+-.. +...... ....... +...
T Consensus 1251 I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~------~~~~~~~~~s~~ 1324 (1780)
T PLN03076 1251 IIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRN------KDKEAPPSSPQS 1324 (1780)
T ss_pred HHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccc------cccccccccccc
Confidence 1122222221 23444555555554443333333345555554433322100 0000000 0000000 0000
Q ss_pred HHHHHHHHHHhhhcCCHHHHH----HHHHHHHHhhc-CChhhhHHHHHHHHHHHhhchhhhhh------hHhhHhHHHHH
Q 003195 417 KRAFASACASVLKYATPSQAQ----KLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSG------YHAVIVPVIFI 485 (840)
Q Consensus 417 r~~a~~Alg~l~~~~~~~~~~----~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~------~~~~llP~l~~ 485 (840)
..........+ .+.+... .++..+.+... ++.++|..+...+..+....|+.|.+ +...+.|++-.
T Consensus 1325 ~~~~~~~~~~~---~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~ 1401 (1780)
T PLN03076 1325 GKDGKQESGEF---TDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDY 1401 (1780)
T ss_pred ccccccccccc---ccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH
Confidence 00000000000 0111111 11122222222 34567777777777777777777764 22234454321
Q ss_pred hhcC-----------------Cc-hH----HHHHHHHHHHHhcC---CChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHH
Q 003195 486 SRFE-----------------DD-KY----VSDLFEELWEENTS---GDRVTLQLYLGEIVSLICEGIASSSWSSKRKSA 540 (840)
Q Consensus 486 ~~~d-----------------~d-~~----vr~~~~~i~~~~~~---~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa 540 (840)
.++. .+ .+ +.+.+..++..++. .--..+...++.++.++..++..++..+-+.+.
T Consensus 1402 l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~ 1481 (1780)
T PLN03076 1402 VRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGI 1481 (1780)
T ss_pred HHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 1110 00 01 12222222222111 111245667888888999999999999999999
Q ss_pred HHHHHHHHHhCcchhh-hHHHHHHHHHHhcC
Q 003195 541 KAICKLGEILGESLSN-YHHVLLESIMKEVP 570 (840)
Q Consensus 541 ~~L~~La~~~~~~l~~-~l~~llp~L~~~l~ 570 (840)
.||..++...|..|.+ +-..++..+.+.+.
T Consensus 1482 ~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~ 1512 (1780)
T PLN03076 1482 AAFVRLMSNAGHLFSDEKWLEVVLSLKEAAN 1512 (1780)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 9999999999988865 34555555555543
No 246
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=73.65 E-value=1.8e+02 Score=33.65 Aligned_cols=128 Identities=8% Similarity=0.034 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcC-----
Q 003195 496 DLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVP----- 570 (840)
Q Consensus 496 ~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~----- 570 (840)
..+.++++.++.-+ .--...++.++..++...... +..+.+-+++..|++..-. ...+-.|..-+.
T Consensus 195 ~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g------~~~i~~L~~iL~~~~~~ 265 (464)
T PF11864_consen 195 EACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLG------HSAIRTLCDILRSPDPQ 265 (464)
T ss_pred HHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccH------HHHHHHHHHHHcccCcc
Confidence 44456665554321 001234556666666654433 6667777788888863211 223333333332
Q ss_pred -CCCchhHHHHHHHHHHHHHhcccccccCCCCc-hHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 003195 571 -GRLWEGKDALLYAIGSISTSCHKDISAEDPTT-PFAIVDMVSSACRKKIKKYREAAFSCLEQVI 633 (840)
Q Consensus 571 -~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~-~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~ 633 (840)
.++.+.-..++..+..++-+.++.-.... ++ ...+++.+...++.++..+--..+.++..++
T Consensus 266 ~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l-~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 266 NKRDINVLRGAVFFLRMLLWGSGEQGYPSL-PFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred ccccHHHHhhHHHHHHHHHhccccCCccee-cccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 22233333556666666655532110000 11 1247777777776555444444444444444
No 247
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=73.26 E-value=6.5 Score=28.39 Aligned_cols=28 Identities=14% Similarity=0.023 Sum_probs=24.6
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 003195 158 IFDDLLIQSGSRLWRSREASCLSLADII 185 (840)
Q Consensus 158 Il~~Ll~~l~~~~wrvR~aac~Al~~Ll 185 (840)
.+|.|+..+.+.+.++|+.||+||.+|.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5677888888999999999999999985
No 248
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.04 E-value=1.6e+02 Score=38.22 Aligned_cols=112 Identities=14% Similarity=0.105 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhh
Q 003195 155 LDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLC 234 (840)
Q Consensus 155 ~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~ 234 (840)
++.-+..+++.+.-++..+|.-|-.-+.+++.....+.+.+.++.......++.-|....||.+.......+..-+-+.
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~- 117 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKK- 117 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH-
Confidence 6666677788888888888888888888888877767666645444444455578999999999887777665443222
Q ss_pred hccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHH
Q 003195 235 DVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMK 277 (840)
Q Consensus 235 ~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~ 277 (840)
..+.+..++|+++. |..+...+|...|...+-+
T Consensus 118 ---------lsp~LK~li~~wl~-~~~d~~~~vs~aa~~sf~~ 150 (1312)
T KOG0803|consen 118 ---------LSPFLKSLIPPWLG-GQFDLDYPVSEAAKASFKD 150 (1312)
T ss_pred ---------hhHHHHhhhhhhhh-eecccchHHHHHHHHHHHh
Confidence 34578888888763 3444444555555554433
No 249
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=72.13 E-value=2.5e+02 Score=34.61 Aligned_cols=97 Identities=14% Similarity=0.209 Sum_probs=56.0
Q ss_pred hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCC----hHHHHHHHHHHHHHHHHhhCCCChhHH--HHHHHHHHHHHccC
Q 003195 115 RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP----KRTIDEHLDLIFDDLLIQSGSRLWRSR--EASCLSLADIIQGR 188 (840)
Q Consensus 115 ~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~----~~~i~~~~~~Il~~Ll~~l~~~~wrvR--~aac~Al~~Ll~~~ 188 (840)
..++|.++.+.+|+++.+|+=+...|+.+-..+ .+..+..+...+...+..+....|..- ..-=.++.-+++..
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i~~~~~~~~~~~~fW~g~~~Il~~l 198 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRISPNNYNPDSVIRFWSGFSLILRLL 198 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHc
Confidence 678999999999999999999999999997653 233332222222222222322222111 11123455566656
Q ss_pred CchhhhHHHHH-----HHHHHHHHhccc
Q 003195 189 KFDQVGKHLRR-----IWTAAFRAMDDI 211 (840)
Q Consensus 189 ~~~~l~~~L~~-----l~~~l~~~ldD~ 211 (840)
+.+.+..++.. ++..++.-+.+.
T Consensus 199 d~~~i~~~l~~~~~~~i~~L~~~hL~~~ 226 (727)
T PF12726_consen 199 DKEQITHSLRALELDPIYRLLLNHLSSN 226 (727)
T ss_pred cHHHHHHHHhccccchHHHHHHHHhhcc
Confidence 66666666666 444445444444
No 250
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=71.72 E-value=99 Score=30.86 Aligned_cols=75 Identities=12% Similarity=-0.017 Sum_probs=53.1
Q ss_pred hHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhh
Q 003195 478 VIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSN 556 (840)
Q Consensus 478 ~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~ 556 (840)
++++-|+.....++..+|....++.+-+...+ -+.| .+.+|.+.....|++..+|..|...+..+.+++++.+..
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG--LvnP--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQG--LVNP--KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC--CCCh--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444445556678889988777776655432 1111 235677777889999999999999999999998776543
No 251
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=71.52 E-value=1.7e+02 Score=32.32 Aligned_cols=204 Identities=13% Similarity=0.209 Sum_probs=126.3
Q ss_pred HHHHhhhcCCchHHHHHHHHhccccchhhhhhHHhHHHHHHHHh-hh-------hhchhhhhHHHHHHhhcCCCCHhHHH
Q 003195 63 LCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQA-GD-------ALKPHLRLLIPKLVRFQYDPDKNVQD 134 (840)
Q Consensus 63 l~~lA~~~g~p~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~-~~-------~l~~~l~~lvP~L~~~~~Dp~~~VR~ 134 (840)
+..||+++-..++++.+......- .+.+|+.++.-|+.+.... +. .+..+-+.++..|+++..+|+- --
T Consensus 65 v~qLa~Ei~~~dll~~Li~~L~~L-~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~di--al 141 (335)
T PF08569_consen 65 VAQLAQEIYRSDLLYLLIRNLPKL-DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDI--AL 141 (335)
T ss_dssp HHHHHHHHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTT--HH
T ss_pred HHHHHHHHHHhCHHHHHHHHhhhC-CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccc--cc
Confidence 678888888889988888765554 3889999998888887653 22 2333447899999999987763 33
Q ss_pred HHHHHHHHhccCChHHHHHH--HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCC---chhhhHHHHHHHHHHHHHhc
Q 003195 135 AMAHIWKSLVADPKRTIDEH--LDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRK---FDQVGKHLRRIWTAAFRAMD 209 (840)
Q Consensus 135 a~~~iw~~Lv~d~~~~i~~~--~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~---~~~l~~~L~~l~~~l~~~ld 209 (840)
..+.+.+-.+... .+.++ .++.+..++.-+..+...+-.-|-..+-+++.... .+-+..++...+...-+++.
T Consensus 142 ~~g~mlRec~k~e--~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~ 219 (335)
T PF08569_consen 142 NCGDMLRECIKHE--SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLE 219 (335)
T ss_dssp HHHHHHHHHTTSH--HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHhhH--HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4455555555442 12222 13455556777788888887777777878776432 12244555666666666677
Q ss_pred cccHHHHHHHHHHHHHHH------HHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhc
Q 003195 210 DIKETVRTAGDKLCRSVT------SLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAG 283 (840)
Q Consensus 210 D~~~~VR~aA~~~~~~l~------~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g 283 (840)
..+-..|+.+.+++..+. .+..|.++ ..+-+..+|.. |.+++..+|--|.+++--.+....
T Consensus 220 s~NYvtkrqslkLL~ellldr~n~~vm~~yi~--------~~~nLkl~M~l-----L~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 220 SSNYVTKRQSLKLLGELLLDRSNFNVMTRYIS--------SPENLKLMMNL-----LRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp -SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT---------HHHHHHHHHH-----TT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred CCCeEeehhhHHHHHHHHHchhHHHHHHHHHC--------CHHHHHHHHHH-----hcCcchhhhHHHHHHHHHHHhCCC
Confidence 778788888877776652 22233332 23445555553 456778899999988876665543
Q ss_pred c
Q 003195 284 I 284 (840)
Q Consensus 284 ~ 284 (840)
+
T Consensus 287 K 287 (335)
T PF08569_consen 287 K 287 (335)
T ss_dssp -
T ss_pred C
Confidence 3
No 252
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=71.52 E-value=15 Score=32.84 Aligned_cols=60 Identities=15% Similarity=0.064 Sum_probs=49.3
Q ss_pred hhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcc-hhhhHHHHHHHHHHhcC
Q 003195 511 VTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES-LSNYHHVLLESIMKEVP 570 (840)
Q Consensus 511 ~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~-l~~~l~~llp~L~~~l~ 570 (840)
..+.+|.+.++..+...+.+-+.+||..|.+.|.-+.+.+|+. +..+-..+++....-+.
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~ 63 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLG 63 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHC
Confidence 4688999999999999999999999999999999999999887 44455555555555443
No 253
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=70.60 E-value=2e+02 Score=32.84 Aligned_cols=246 Identities=10% Similarity=0.082 Sum_probs=112.2
Q ss_pred HHHHHHHHHhhhcCC-CHHHHHHHHHHHHHHHHHhC--cchh--hhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhc
Q 003195 517 LGEIVSLICEGIASS-SWSSKRKSAKAICKLGEILG--ESLS--NYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSC 591 (840)
Q Consensus 517 l~~Il~~l~~~L~d~-s~~vR~~Aa~~L~~La~~~~--~~l~--~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~ 591 (840)
.+.+++.+...+.++ +.+.+..|..+++.|...-+ ..|- ..++.+++.|-....+ ...--.++-.+=-+ .+
T Consensus 141 l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~--~Ql~Y~~ll~lWlL--SF 216 (429)
T cd00256 141 LDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLG--FQLQYQSIFCIWLL--TF 216 (429)
T ss_pred HHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhcccc--HHHHHHHHHHHHHH--hc
Confidence 334555566666543 46677788889988875322 1221 1234444444322211 01111111111111 11
Q ss_pred ccccccCCCCchHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHcCCc----c-----hHHhHHHHHHhhcccccccCC
Q 003195 592 HKDISAEDPTTPFAIVDMVSSACRKK-IKKYREAAFSCLEQVIKAFRDP----K-----FFNIIFPLLFEMCGSTALNKS 661 (840)
Q Consensus 592 ~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~R~~Al~~L~~l~~~~~~~----~-----l~~~v~~i~~~l~~~~~~~~~ 661 (840)
.+...... .-..+++.+++.++.. ..++-+-++.++..++..-.+. . +..-+++++..+......+
T Consensus 217 ~~~~~~~~--~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~D-- 292 (429)
T cd00256 217 NPHAAEVL--KRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDD-- 292 (429)
T ss_pred cHHHHHhh--ccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCc--
Confidence 11000000 0123555555544432 3477777888888888743211 1 1224556667666553332
Q ss_pred CCCCCCCCccchhhhccccCCchhHHHhhhhhhHHhhchhhHHHh-h-hhhHHHHHhhcCCCCChH-----------HHH
Q 003195 662 GQVPLPSDASKEESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQ-E-KNLVQLFTISLSPGFPWT-----------ELC 728 (840)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~l~~~~~~~~~~~~~~~-----------~~~ 728 (840)
|+....+...-+.|-..++..++=|-|.. . ...+.| ...=.++..|. ++-
T Consensus 293 ----------------edL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~W-Sp~H~se~FW~EN~~kf~~~~~~ll 355 (429)
T cd00256 293 ----------------EDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHW-SPVHKSEKFWRENADRLNEKNYELL 355 (429)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccC-CCCCCCchHHHHHHHHHHhcchHHH
Confidence 22121122222222333333344333332 1 112222 11000234566 455
Q ss_pred HHHHhhhcCCCCCCC----ccchhHHHHH------HHhh--hhhhhhhhcccchhhhhhHhhhHHHHHHHHH
Q 003195 729 SRLQKTLDDSAGTSP----HAGISSLIQE------LFHT--VSPKVVECISTVKIAQVHISASECLLEICKL 788 (840)
Q Consensus 729 ~~~~~~l~~~~~~~~----~~~~~~~~~~------~~~~--~~~~~~~~~~~~k~~~vr~~a~~~l~~i~~~ 788 (840)
.+|..++..+.++.. -+|++.++.. +.+. .+.++-..+ +..+++||-.|+-|+..++.+
T Consensus 356 k~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm-~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 356 KILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLL-NHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred HHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHh-cCCCHHHHHHHHHHHHHHHHh
Confidence 577777765554422 1455544433 1221 344445555 678899999999999988654
No 254
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=70.43 E-value=1.4e+02 Score=31.01 Aligned_cols=176 Identities=11% Similarity=0.050 Sum_probs=89.5
Q ss_pred HHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCC-hhhhHHHHHHHHHHHhhchhhhhhhHhhH
Q 003195 401 LRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDD-KNSQISCAILLKSYSSVASDVLSGYHAVI 479 (840)
Q Consensus 401 L~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~d-~~~r~~~~~~i~ai~~~~~~~f~~~~~~l 479 (840)
++.++..+....++.+......++..++...+ .....++.-+..+...+ .+.+..+...+..+-+..+..| ++++.+
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~ 79 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPL 79 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHH
Confidence 34444434456778888888888888876553 33333333333333222 2223344445555544444444 444444
Q ss_pred hHH-HHHhh---cCCchHHHHHHH--HHHHHhcCCChhhHHhhHHHHHHHHHhhh-cCCCHHHHHHHHHHHHHHHHHhCc
Q 003195 480 VPV-IFISR---FEDDKYVSDLFE--ELWEENTSGDRVTLQLYLGEIVSLICEGI-ASSSWSSKRKSAKAICKLGEILGE 552 (840)
Q Consensus 480 lP~-l~~~~---~d~d~~vr~~~~--~i~~~~~~~~~~~i~~yl~~Il~~l~~~L-~d~s~~vR~~Aa~~L~~La~~~~~ 552 (840)
+-. ..... .+.+......+. ....+++...+. +-.++++.+...+ ++.+..++..|..+|..++..---
T Consensus 80 L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vv 155 (234)
T PF12530_consen 80 LLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVV 155 (234)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhc
Confidence 322 11111 112222211111 111222222211 5567888888888 778888888888888888854222
Q ss_pred chhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHH
Q 003195 553 SLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSIST 589 (840)
Q Consensus 553 ~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~ 589 (840)
++ ...|..+.+.+.. +-+-.+++++.+++.
T Consensus 156 d~----~s~w~vl~~~l~~---~~rp~v~~~l~~l~~ 185 (234)
T PF12530_consen 156 DF----YSAWKVLQKKLSL---DYRPLVLKSLCSLFA 185 (234)
T ss_pred cH----HHHHHHHHHhcCC---ccchHHHHHHHHHHH
Confidence 22 3456666666632 224455666666654
No 255
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=69.90 E-value=35 Score=32.04 Aligned_cols=114 Identities=16% Similarity=0.132 Sum_probs=69.1
Q ss_pred HHHHHhhhc---CCchHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhh----------------hhchhhhhHHHHHH
Q 003195 62 ELCNLANEM---GQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGD----------------ALKPHLRLLIPKLV 122 (840)
Q Consensus 62 ~l~~lA~~~---g~p~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~----------------~l~~~l~~lvP~L~ 122 (840)
.+..++... +||+++..++.+.+++. ...+....-|..+.+...+ .+....+.++..++
T Consensus 11 ~l~~i~~~~~P~~Wp~~l~~l~~~~~~~~--~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~ 88 (148)
T PF08389_consen 11 VLAEIAKRDWPQQWPDFLEDLLQLLQSSP--QHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILS 88 (148)
T ss_dssp HHHHHHHHHTTTTSTTHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHChhhCchHHHHHHHHhccch--hHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554 78999999999876642 3444455455665554432 12233445666666
Q ss_pred hhcCCCC----HhHHHHHHHHHHHhccCChHHHHHHH-HHHHHHHHHhhCCCChhHHHHHHHHH
Q 003195 123 RFQYDPD----KNVQDAMAHIWKSLVADPKRTIDEHL-DLIFDDLLIQSGSRLWRSREASCLSL 181 (840)
Q Consensus 123 ~~~~Dp~----~~VR~a~~~iw~~Lv~d~~~~i~~~~-~~Il~~Ll~~l~~~~wrvR~aac~Al 181 (840)
+++.... +.+...+..+++..++..+ +.... .++++.++..+.+++ .|++||.+|
T Consensus 89 ~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 89 QILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 5555443 7888888888888887432 22222 247787888886654 477777653
No 256
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=69.10 E-value=1.7e+02 Score=31.73 Aligned_cols=171 Identities=11% Similarity=0.053 Sum_probs=84.5
Q ss_pred HHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHH---HHHHHHHHhhcC-----ChhhhHHHHHHHHHHHhhch--
Q 003195 400 LLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQ---KLIEETAALHID-----DKNSQISCAILLKSYSSVAS-- 469 (840)
Q Consensus 400 lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~---~li~~l~~~~~~-----d~~~r~~~~~~i~ai~~~~~-- 469 (840)
....+++.+ +.++..+...++..+..++...+..... ..++.+.+.+.. +.+....+..+++.+.+.-.
T Consensus 106 ~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R 184 (312)
T PF03224_consen 106 PYSPFLKLL-DRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYR 184 (312)
T ss_dssp -HHHHHHH--S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHH
T ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhH
Confidence 445566655 5567889999999999998877654433 566666665532 23445777788888875432
Q ss_pred hhhhhhHhhHhHHHHHhh-----cCCchHHH---HHHHHHHHHhcCCChhhHHhh-HHHHHHHHHhhhcC-CCHHHHHHH
Q 003195 470 DVLSGYHAVIVPVIFISR-----FEDDKYVS---DLFEELWEENTSGDRVTLQLY-LGEIVSLICEGIAS-SSWSSKRKS 539 (840)
Q Consensus 470 ~~f~~~~~~llP~l~~~~-----~d~d~~vr---~~~~~i~~~~~~~~~~~i~~y-l~~Il~~l~~~L~d-~s~~vR~~A 539 (840)
..|-. ...++.+..-. .+....+. ....-+|---. .+..+... -..+++.+.+.+++ ...+|=|-+
T Consensus 185 ~~f~~--~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF--~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~ 260 (312)
T PF03224_consen 185 QVFWK--SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF--EPEIAEELNKKYLIPLLADILKDSIKEKVVRVS 260 (312)
T ss_dssp HHHHT--HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT--SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHH
T ss_pred HHHHh--cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc--CHHHHHHHhccchHHHHHHHHHhcccchHHHHH
Confidence 12211 22333332222 12222222 23345673211 11111111 11266666666554 457888888
Q ss_pred HHHHHHHHHHhCcchhh-hHHHHHHHHHHhcCCCCch
Q 003195 540 AKAICKLGEILGESLSN-YHHVLLESIMKEVPGRLWE 575 (840)
Q Consensus 540 a~~L~~La~~~~~~l~~-~l~~llp~L~~~l~~r~~~ 575 (840)
..++.+++....+.+.+ .+..=++.+++.|.+|.|.
T Consensus 261 la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~ 297 (312)
T PF03224_consen 261 LAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWS 297 (312)
T ss_dssp HHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--S
T ss_pred HHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCC
Confidence 88888888766543322 2333344455666666664
No 257
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=68.91 E-value=15 Score=37.22 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=56.1
Q ss_pred hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhh
Q 003195 115 RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVG 194 (840)
Q Consensus 115 ~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~ 194 (840)
+...|.+..+..|+|+-+||+..-..-... ...+++.++..+...+.|+++.||.+..++|.++... .++...
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~------~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~-~~~~v~ 191 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYI------RKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK-DPDEVL 191 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHG------GGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT--HHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHH------HhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh-CHHHHH
Confidence 457888888999999999999844332222 2257788888888889999999999999999987543 334444
Q ss_pred HHHHH
Q 003195 195 KHLRR 199 (840)
Q Consensus 195 ~~L~~ 199 (840)
+|+.+
T Consensus 192 ~~l~~ 196 (213)
T PF08713_consen 192 EFLQK 196 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
No 258
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=68.65 E-value=1.5e+02 Score=39.24 Aligned_cols=167 Identities=12% Similarity=0.060 Sum_probs=93.7
Q ss_pred HHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhh-cCChhhhHHHHH
Q 003195 381 FISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALH-IDDKNSQISCAI 459 (840)
Q Consensus 381 ~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~-~~d~~~r~~~~~ 459 (840)
.+......++.-+++|.+.++...-..+ ...++.|+.-.......+....+.-..+.++..++.-. .+.+..-.++-.
T Consensus 417 ll~~~f~~~~~vL~~~f~siL~la~~Ll-~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~~aL~ 495 (1426)
T PF14631_consen 417 LLDQTFKGHSEVLKDYFPSILSLAQSLL-RSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVDAALD 495 (1426)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHH-TSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 3444555667778899999999888888 56788898888777777777665322234444444333 233434456678
Q ss_pred HHHHHHhhchhhhhhhHhhHhHHHHHhhcC-CchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHH
Q 003195 460 LLKSYSSVASDVLSGYHAVIVPVIFISRFE-DDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRK 538 (840)
Q Consensus 460 ~i~ai~~~~~~~f~~~~~~llP~l~~~~~d-~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~ 538 (840)
++..++...++.+.+|...+.+++ ..+.+ ..+.+|.+|.=+..-..+.. ..-...-+++.-.+.+.|.+++.+.|+.
T Consensus 496 vL~~L~~~~~~~l~~fa~~l~giL-D~l~~Ls~~qiR~lf~il~~La~~~~-~~~s~i~del~ivIRKQLss~~~~~K~~ 573 (1426)
T PF14631_consen 496 VLCELAEKNPSELQPFATFLKGIL-DYLDNLSLQQIRKLFDILCTLAFSDS-SSSSSIQDELHIVIRKQLSSSNPKYKRI 573 (1426)
T ss_dssp HHHHHHHH-HHHHHHTHHHHHGGG-GGGGG--HHHHHHHHHHHHHHHHHHS-S---HHHHHHHHHHHHHHT-SSHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHhcCCc-ccchhhHHHHHHHHHHhhcCCcHHHHHH
Confidence 888888877777777655444432 22322 45567776532211111110 0111233555556667777777777776
Q ss_pred HHHHHHHHHHHh
Q 003195 539 SAKAICKLGEIL 550 (840)
Q Consensus 539 Aa~~L~~La~~~ 550 (840)
+.-+.-.++..+
T Consensus 574 GIIGav~~i~~l 585 (1426)
T PF14631_consen 574 GIIGAVMMIKHL 585 (1426)
T ss_dssp HHHHHHHHHHHT
T ss_pred hHHHHHHHHHHH
Confidence 654444444433
No 259
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=67.76 E-value=10 Score=27.28 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=25.3
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 003195 520 IVSLICEGIASSSWSSKRKSAKAICKLG 547 (840)
Q Consensus 520 Il~~l~~~L~d~s~~vR~~Aa~~L~~La 547 (840)
.++.+.+.+.+.+.++|+.|+.+|+.|+
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5777888889999999999999999987
No 260
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=65.97 E-value=2.8e+02 Score=32.89 Aligned_cols=143 Identities=10% Similarity=0.103 Sum_probs=85.8
Q ss_pred CChhhhHHHHHHHHHHHhhchh---hhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhh-HHHHHHHH
Q 003195 449 DDKNSQISCAILLKSYSSVASD---VLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLY-LGEIVSLI 524 (840)
Q Consensus 449 ~d~~~r~~~~~~i~ai~~~~~~---~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~y-l~~Il~~l 524 (840)
.|.+.+.++..++.++++.... .+. -.+...|++- -.+|++.-|.....++.-.++-..+.-=..+ ....++.+
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~-~~dv~~plvq-ll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l 466 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLK-RNDVAQPLVQ-LLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDIL 466 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCc-cchhHHHHHH-HhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHH
Confidence 4778888888888888764311 121 1111233332 2366666665544443333221110000011 23467888
Q ss_pred HhhhcCCCHHHHHHHHHHHHHHHHHhCcchh-hhHHHHHHHHHHh-cCCCCchhHHHHHHHHHHHHHhccc
Q 003195 525 CEGIASSSWSSKRKSAKAICKLGEILGESLS-NYHHVLLESIMKE-VPGRLWEGKDALLYAIGSISTSCHK 593 (840)
Q Consensus 525 ~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~-~~l~~llp~L~~~-l~~r~~~~Ke~vl~aL~~l~~~~~~ 593 (840)
.+++.++...+|..+.-+|..+.-...+.+. ..+..+-.-++.. ..+..|.+.|..+.-+..+.-++.+
T Consensus 467 ~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~ 537 (678)
T KOG1293|consen 467 ESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRK 537 (678)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHH
Confidence 8999999999999999999988854444322 2344454444444 4788999999999999998766543
No 261
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=64.00 E-value=6.5e+02 Score=36.33 Aligned_cols=113 Identities=17% Similarity=0.106 Sum_probs=74.6
Q ss_pred HHHHHHHHhccccchhhhhhHHhHHHHHHHHhh-hhhchhhhhHHHHHHhhcCCCCHhHHH--------HHHHHHHHhcc
Q 003195 75 LIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAG-DALKPHLRLLIPKLVRFQYDPDKNVQD--------AMAHIWKSLVA 145 (840)
Q Consensus 75 lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~-~~l~~~l~~lvP~L~~~~~Dp~~~VR~--------a~~~iw~~Lv~ 145 (840)
++.+|.++.-.. .|..|.|-.+|++.+++.-. ..+-.+...++-.++-+..|-...+-. .+.++......
T Consensus 1034 l~~k~~~lCy~~-~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~ 1112 (3550)
T KOG0889|consen 1034 LLEKLCHLCYDS-TWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFI 1112 (3550)
T ss_pred HHHHHHHHhccH-hHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHH
Confidence 566777776555 59999999999998888754 233345556677777666664444333 22233222221
Q ss_pred C--ChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccC
Q 003195 146 D--PKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGR 188 (840)
Q Consensus 146 d--~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~ 188 (840)
+ ..+.....+..++..+...+.+++-+||+.+-..|..+.+..
T Consensus 1113 ~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s 1157 (3550)
T KOG0889|consen 1113 DELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELS 1157 (3550)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHc
Confidence 1 123334456777778888888999999999999998887654
No 262
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=62.63 E-value=41 Score=30.88 Aligned_cols=83 Identities=12% Similarity=0.141 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHhcC-CCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 003195 557 YHHVLLESIMKEVP-GRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKA 635 (840)
Q Consensus 557 ~l~~llp~L~~~l~-~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~ 635 (840)
+++.++|.+.+++. .+..|-|.+...-++.++.+.. +.. +.+..+++.+.+.....+. .+.++.|+..+.+.
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~--L~~---~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP--LSD---EVLNALMESILKNWTQETV--QRQALICLIVLCQS 75 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC--CcH---HHHHHHHHHHHhccccchh--HHHHHHHHHHHHHc
Confidence 67899999999998 6667777777777777776543 211 2333444444433322222 57889999998876
Q ss_pred c-CCcchHHhHH
Q 003195 636 F-RDPKFFNIIF 646 (840)
Q Consensus 636 ~-~~~~l~~~v~ 646 (840)
. +.+.+...+.
T Consensus 76 q~~~~~lp~~~~ 87 (121)
T PF12397_consen 76 QENVDSLPRKVF 87 (121)
T ss_pred ccccccCCHHHH
Confidence 6 3334444433
No 263
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=62.45 E-value=8.5 Score=27.02 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=24.1
Q ss_pred hHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHH
Q 003195 94 GAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQD 134 (840)
Q Consensus 94 gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~ 134 (840)
||++|||-|+.+.++. +++..|..|.+|++..+++
T Consensus 1 gA~lgLGl~~aGs~~~------~~~~~L~~~l~~~~~~~~~ 35 (35)
T PF01851_consen 1 GAILGLGLIYAGSGNE------EVLDLLRPYLSDTSNEMIQ 35 (35)
T ss_dssp HHHHHHHHHTTTT--H------HHHHHHHHHHCTSSHHHHH
T ss_pred CcHHHHHHHHcCCCCH------HHHHHHHHHHHhccccccC
Confidence 6889999999887553 2455555566888877764
No 264
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=62.35 E-value=1.3e+02 Score=31.82 Aligned_cols=158 Identities=11% Similarity=0.111 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhcc------C-c-cccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCC---HHHHH----HHHH
Q 003195 377 GVASFISLLVQKIGM------D-I-KPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT---PSQAQ----KLIE 441 (840)
Q Consensus 377 ~a~~~l~~L~~~~~~------~-~-~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~---~~~~~----~li~ 441 (840)
+++..+..++...+. . + ......+-..++.+|.+-|+..+-..+..++..+++.+- .+.+. ..++
T Consensus 66 E~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~ 145 (255)
T PF10350_consen 66 ESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELPEEWLD 145 (255)
T ss_pred HHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHH
Confidence 456666666654321 1 1 133556666677777555666666666677766665432 22232 2333
Q ss_pred HHHHhhcCC-----hhhhHHHH--HHHHHHHhhchhhhhhhHhhHhHHHHH-hhcCC----c---hHHHHHHHHHHHHhc
Q 003195 442 ETAALHIDD-----KNSQISCA--ILLKSYSSVASDVLSGYHAVIVPVIFI-SRFED----D---KYVSDLFEELWEENT 506 (840)
Q Consensus 442 ~l~~~~~~d-----~~~r~~~~--~~i~ai~~~~~~~f~~~~~~llP~l~~-~~~d~----d---~~vr~~~~~i~~~~~ 506 (840)
.+++..... ...|+++| .++.++...-+..-.+.+...+.-++. +.... + +..+-.+.+++..+.
T Consensus 146 ~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if 225 (255)
T PF10350_consen 146 ELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIF 225 (255)
T ss_pred HHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHH
Confidence 333333222 13576655 455566554433211333333333322 22111 0 112222335554443
Q ss_pred C--CChhhHHhhHHHHHHHHHhhhcCCCHH
Q 003195 507 S--GDRVTLQLYLGEIVSLICEGIASSSWS 534 (840)
Q Consensus 507 ~--~~~~~i~~yl~~Il~~l~~~L~d~s~~ 534 (840)
. ..+..+.+|+++.+.+..++..++.|.
T Consensus 226 ~ds~L~~~~~~yi~~~l~lai~~f~s~~Wa 255 (255)
T PF10350_consen 226 RDSKLSEDVSPYIEDALILAIKGFSSPDWA 255 (255)
T ss_pred hcchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 3 345678899999999999999999983
No 265
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=62.07 E-value=60 Score=32.34 Aligned_cols=74 Identities=14% Similarity=0.122 Sum_probs=54.4
Q ss_pred HHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHH
Q 003195 119 PKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLR 198 (840)
Q Consensus 119 P~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~ 198 (840)
+.+..+..|+++-+||++.-++-....+ +.+.+.+++.+...+.|++..||.+..++|.++... .++...+|+.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~-~~~~v~~~l~ 181 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK-DPERVIAFLE 181 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-CHHHHHHHHH
Confidence 7888889999999999986555443321 246777888788888889999999999999998654 2233444433
No 266
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=61.80 E-value=35 Score=30.46 Aligned_cols=63 Identities=10% Similarity=-0.049 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhcc
Q 003195 148 KRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDD 210 (840)
Q Consensus 148 ~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD 210 (840)
+..+.-|++.++..+..+|+.=..+||.-|..-|.-+++..+..-+..+..++++..+.++.-
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCC
Confidence 456778999999999999999999999999998888887766544566666777766666643
No 267
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=61.35 E-value=9.9 Score=33.11 Aligned_cols=49 Identities=16% Similarity=0.346 Sum_probs=34.6
Q ss_pred hhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHH
Q 003195 90 NSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHI 139 (840)
Q Consensus 90 ~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~i 139 (840)
..|.|+..||++++...+=.+=+++++++..|=++..||. .|++++.++
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~~~-~I~~tvk~t 52 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHANDPQ-PIRTTVKKT 52 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS-S-SHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCCCc-hHHHHHHHH
Confidence 4577999999999987766666799999999999999865 455555443
No 268
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=61.29 E-value=94 Score=29.67 Aligned_cols=76 Identities=9% Similarity=0.053 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhh--HHHHHHHHHHhcCCC-CchhHHHHHHHHHHHHHhcc
Q 003195 517 LGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNY--HHVLLESIMKEVPGR-LWEGKDALLYAIGSISTSCH 592 (840)
Q Consensus 517 l~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~--l~~llp~L~~~l~~r-~~~~Ke~vl~aL~~l~~~~~ 592 (840)
..+.+..+.+-+.+.+..+...|...|..+++.+|..|... -..++..|.+.+..+ ...+|+.+++-+......++
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 34567778888899999999999999999999999877543 255667777777664 46789999988888887665
No 269
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=59.39 E-value=92 Score=34.42 Aligned_cols=128 Identities=16% Similarity=0.110 Sum_probs=84.9
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCC
Q 003195 522 SLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPT 601 (840)
Q Consensus 522 ~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~ 601 (840)
.+-.+.....+|.+ |-++|...+... ..-...+..+.+++..+...+--.+|.-+.++..+|+..+..+-
T Consensus 15 KAT~e~nT~enW~~-------IlDvCD~v~~~~-~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EV-- 84 (462)
T KOG2199|consen 15 KATDEKNTSENWSL-------ILDVCDKVGSDP-DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEV-- 84 (462)
T ss_pred HhcCcccccccHHH-------HHHHHHhhcCCC-cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHH--
Confidence 33334445667764 556666666654 34577889999999999888877778888888999987553210
Q ss_pred chHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHcCCcchHHhHHHHHHhhccccccc
Q 003195 602 TPFAIVDMVSSACR-KKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTALN 659 (840)
Q Consensus 602 ~~~~i~~~l~~~~~-~~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~~l~~~~~~~ 659 (840)
.-.....-+.+.+. ...++++..--.++.+....|..|.-...+..+...+...++..
T Consensus 85 sSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp~lsLi~~l~~klk~~g~~f 143 (462)
T KOG2199|consen 85 SSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDPSLSLISALYKKLKEEGITF 143 (462)
T ss_pred hhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHcCCCc
Confidence 01122223333343 34678888888889999999988765566677777777655443
No 270
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=58.94 E-value=1.5e+02 Score=27.74 Aligned_cols=103 Identities=16% Similarity=0.177 Sum_probs=68.0
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccC--CCCchHH
Q 003195 528 IASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAE--DPTTPFA 605 (840)
Q Consensus 528 L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~--~~~~~~~ 605 (840)
+.+++|..= .-|++++...+. .-...+..|.++++.++..+....|..|-.++.+|+..+..+ ...|+..
T Consensus 13 ~~~~D~~~i----l~icd~I~~~~~----~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~ 84 (133)
T cd03561 13 LEEPDWALN----LELCDLINLKPN----GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLE 84 (133)
T ss_pred cCCccHHHH----HHHHHHHhCCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHH
Confidence 445666543 345555543321 236678888999988888888888888889999998754321 1123444
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCc
Q 003195 606 IVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP 639 (840)
Q Consensus 606 i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~ 639 (840)
+++.+... ...+..+|..++.++......++++
T Consensus 85 l~~l~~~~-~~~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 85 LVKIAKNS-PKYDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred HHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44333221 1347799999999999999999874
No 271
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.45 E-value=5.6e+02 Score=33.82 Aligned_cols=87 Identities=11% Similarity=0.047 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHH
Q 003195 416 AKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYV 494 (840)
Q Consensus 416 Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~v 494 (840)
|.+..+.+++...-..+++ ...+..+.+...- +....|..+...+..+....++.+..++++.+|++-.-+.|++++|
T Consensus 1520 v~~~li~~i~~~~~a~~~d-~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~V 1598 (1621)
T KOG1837|consen 1520 VSKLLIAEIASDSVADKDD-LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEV 1598 (1621)
T ss_pred HHHHHHHHHHhhccCChhh-hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHH
Confidence 4455555555554444444 5555555544332 3346677777777888888899999999999999988889998888
Q ss_pred HHHHHHHHH
Q 003195 495 SDLFEELWE 503 (840)
Q Consensus 495 r~~~~~i~~ 503 (840)
...+.++..
T Consensus 1599 e~~~q~li~ 1607 (1621)
T KOG1837|consen 1599 ECLCQKLIR 1607 (1621)
T ss_pred HHHHHHHHH
Confidence 776655443
No 272
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=58.25 E-value=1.5e+02 Score=36.05 Aligned_cols=88 Identities=9% Similarity=0.055 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHH-HHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHH
Q 003195 356 DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTS-MLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS 434 (840)
Q Consensus 356 ~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~-~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~ 434 (840)
+.|+..|.+.+.++ ..|..++..++.++.+-+..+....+ .+++.|++.|..|.+..|--.+..++-.++...+.
T Consensus 69 K~~~~~l~~~~~~~---~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~- 144 (668)
T PF04388_consen 69 KHLFDKLNDYFVKP---SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS- 144 (668)
T ss_pred HHHHHHHHHHHcCc---hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc-
Confidence 44556666666543 67999999999999988877755555 77888888887899999999999999999887764
Q ss_pred HHHHHHHHHHHhh
Q 003195 435 QAQKLIEETAALH 447 (840)
Q Consensus 435 ~~~~li~~l~~~~ 447 (840)
.+..+++.+..-|
T Consensus 145 ~l~~~L~~Lf~If 157 (668)
T PF04388_consen 145 SLGPHLPDLFNIF 157 (668)
T ss_pred hhhHHHHHHHHHH
Confidence 3556666666544
No 273
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=58.01 E-value=12 Score=27.39 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=20.0
Q ss_pred HHHHHHHHHhccccHHHHHHHHHH
Q 003195 199 RIWTAAFRAMDDIKETVRTAGDKL 222 (840)
Q Consensus 199 ~l~~~l~~~ldD~~~~VR~aA~~~ 222 (840)
.+...+.+.+.|.++.||++|..+
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 666777778999999999998764
No 274
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=56.64 E-value=1.2e+02 Score=28.78 Aligned_cols=76 Identities=7% Similarity=-0.006 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhh--HHHHHHHHHHhcCC-CCchhHHHHHHHHHHHHHhcc
Q 003195 517 LGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNY--HHVLLESIMKEVPG-RLWEGKDALLYAIGSISTSCH 592 (840)
Q Consensus 517 l~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~--l~~llp~L~~~l~~-r~~~~Ke~vl~aL~~l~~~~~ 592 (840)
..+.+..+.+-+.+.+..+...|...|..+++.+|..|... -..++..|.+.+.. ....+|+.++..+......++
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 45677888888999999999999999999999999876543 24556666665543 346789999988888877665
No 275
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=55.83 E-value=3.1e+02 Score=30.06 Aligned_cols=59 Identities=19% Similarity=0.120 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHcCC
Q 003195 577 KDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKK--IKKYREAAFSCLEQVIKAFRD 638 (840)
Q Consensus 577 Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~R~~Al~~L~~l~~~~~~ 638 (840)
-.-.+.++..+.......... .....+-.+++-.+... ...+|+.|+.++.++....++
T Consensus 179 ~~w~~~al~~~~~~~~~~~~~---~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~ 239 (339)
T PF12074_consen 179 LCWLLRALEALLSDHPSELSS---DKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPE 239 (339)
T ss_pred HHHHHHHHHHHHhcchhhhhh---hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChH
Confidence 344566776666655443221 11455666677666666 789999999999999988775
No 276
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=55.36 E-value=1.6e+02 Score=27.25 Aligned_cols=87 Identities=13% Similarity=0.094 Sum_probs=51.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHH---HHHHHHHH---
Q 003195 134 DAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRR---IWTAAFRA--- 207 (840)
Q Consensus 134 ~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~---l~~~l~~~--- 207 (840)
..+..|.+....++ .-+..|+..|++.+++++..|+.-|-.-|.-+++.-+ +.+...+.. ++..+...
T Consensus 20 y~~~Eia~~t~~s~-----~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~-~~f~~~~~~~~~~Ik~~~~f~g~ 93 (122)
T cd03572 20 YLYEEIAKLTRKSV-----GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN-SDFKRELQRNSAQIRECANYKGP 93 (122)
T ss_pred HHHHHHHHHHHcCH-----HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC-HHHHHHHHHhHHHHHHHHHcCCC
Confidence 33455555444321 2467899999999999999998888777777776543 333332222 22222111
Q ss_pred h-----ccccHHHHHHHHHHHHHH
Q 003195 208 M-----DDIKETVRTAGDKLCRSV 226 (840)
Q Consensus 208 l-----dD~~~~VR~aA~~~~~~l 226 (840)
. +|....||.+|..++..+
T Consensus 94 ~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 94 PDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred CCcccCcchhHHHHHHHHHHHHHH
Confidence 1 245567888877666544
No 277
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=55.26 E-value=16 Score=25.81 Aligned_cols=28 Identities=11% Similarity=-0.021 Sum_probs=22.3
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 003195 158 IFDDLLIQSGSRLWRSREASCLSLADII 185 (840)
Q Consensus 158 Il~~Ll~~l~~~~wrvR~aac~Al~~Ll 185 (840)
.++.|+..+.+.++++++.+|.+|.++.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4555666666788999999999999874
No 278
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=54.61 E-value=64 Score=30.24 Aligned_cols=77 Identities=14% Similarity=-0.044 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHHHHHhcCC---CCchhHHHHHHHHHHHHHhc
Q 003195 517 LGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH--HVLLESIMKEVPG---RLWEGKDALLYAIGSISTSC 591 (840)
Q Consensus 517 l~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l--~~llp~L~~~l~~---r~~~~Ke~vl~aL~~l~~~~ 591 (840)
..+.+..+.+.+++++..+...|...|..+++.+|..|...+ ...+..|.+-+.. ....+|..+++.+......+
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 355778888889999999999999999999999998775432 2344456666544 34678999999888888766
Q ss_pred cc
Q 003195 592 HK 593 (840)
Q Consensus 592 ~~ 593 (840)
+.
T Consensus 115 ~~ 116 (133)
T cd03561 115 GG 116 (133)
T ss_pred cC
Confidence 53
No 279
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=54.24 E-value=32 Score=37.45 Aligned_cols=118 Identities=12% Similarity=0.021 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHH-------HHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 003195 515 LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHH-------VLLESIMKEVPGRLWEGKDALLYAIGSI 587 (840)
Q Consensus 515 ~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~-------~llp~L~~~l~~r~~~~Ke~vl~aL~~l 587 (840)
.|..-++.++... +...++.+.....++++...-+....-+.. ..+..+.+.+...++..+...+..++.+
T Consensus 55 ~~~~~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 55 QYASLFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSL 132 (312)
T ss_dssp -------HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4555555555554 567788888888888888765532221111 2566677767666788899999999999
Q ss_pred HHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 003195 588 STSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIK 634 (840)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~ 634 (840)
+...+..........++.+++.+....+.++..++..|+.+|+.+++
T Consensus 133 l~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~ 179 (312)
T PF03224_consen 133 LSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR 179 (312)
T ss_dssp HTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT
T ss_pred HHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC
Confidence 87654322100001234444444444444566888999999999985
No 280
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=54.19 E-value=3.5e+02 Score=30.20 Aligned_cols=190 Identities=14% Similarity=0.071 Sum_probs=106.7
Q ss_pred chHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhh-hcCCHH-HHHHHHHHHHHhhcCC
Q 003195 373 NTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVL-KYATPS-QAQKLIEETAALHIDD 450 (840)
Q Consensus 373 ~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~-~~~~~~-~~~~li~~l~~~~~~d 450 (840)
..-.+.+.++-.|..+++..+..+.+.-++.++..+ -+....+|..+ .+++..+ ...+++ .+.+.+....+..
T Consensus 149 si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l-~~~~k~ir~~a-~~l~~~~~~~l~~~~~~s~~~~~~~~~~--- 223 (372)
T PF12231_consen 149 SIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDL-LSSAKDIRTKA-ISLLLEAKKCLGPNKELSKSVLEDLQRS--- 223 (372)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcchHHHHHH-HHHHHHHHHHhChhHHHHHHHHHHhccc---
Confidence 344578888888999999999888888888888888 45667788774 3443333 222221 1122111111111
Q ss_pred hhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhc---CCChhhHHhhHHHHHHHHHhh
Q 003195 451 KNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENT---SGDRVTLQLYLGEIVSLICEG 527 (840)
Q Consensus 451 ~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~---~~~~~~i~~yl~~Il~~l~~~ 527 (840)
..+. .+.+.+.+-+-..+.+.+... .+-++|..++ +...-.-..|.++.+.....+
T Consensus 224 -----------------~~~~--~~~~~~~~~L~~mi~~~~~~~--~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~c 282 (372)
T PF12231_consen 224 -----------------LENG--KLIQLYCERLKEMIKSKDEYK--LAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKC 282 (372)
T ss_pred -----------------cccc--cHHHHHHHHHHHHHhCcCCcc--hHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHH
Confidence 0000 111112222111112212211 1224554432 211123357889999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhCcch---hhhHHHHHHHHHHhcCCCC-c----hhHHHHHHHHHHHH
Q 003195 528 IASSSWSSKRKSAKAICKLGEILGESL---SNYHHVLLESIMKEVPGRL-W----EGKDALLYAIGSIS 588 (840)
Q Consensus 528 L~d~s~~vR~~Aa~~L~~La~~~~~~l---~~~l~~llp~L~~~l~~r~-~----~~Ke~vl~aL~~l~ 588 (840)
.++++..+|..|..+-..++....... ...+..++..+...++.+. . +.++.++..|..+.
T Consensus 283 Fn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 283 FNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 999999999999999999998654322 2235666666666665432 2 44556666655554
No 281
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=53.88 E-value=65 Score=29.51 Aligned_cols=73 Identities=16% Similarity=0.261 Sum_probs=49.4
Q ss_pred hhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHH-HHHHHHHHHHHhhhc
Q 003195 353 ESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAA-AKRAFASACASVLKY 430 (840)
Q Consensus 353 ~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~-Vr~~a~~Alg~l~~~ 430 (840)
+.+..++|.+.++++.+.....|.++--+++.|+.+. |..++++..++..+..+.... ..+.+..++..+...
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~-----~L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV-----PLSDEVLNALMESILKNWTQETVQRQALICLIVLCQS 75 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc-----CCcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHc
Confidence 3467889999999985445567889999999998876 366677777776664332222 235666666666643
No 282
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=52.34 E-value=14 Score=24.47 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCC
Q 003195 533 WSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPG 571 (840)
Q Consensus 533 ~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~ 571 (840)
|.+|+.|+.+||.+.. +...+.|++.+++
T Consensus 1 ~~vR~~aa~aLg~~~~----------~~a~~~L~~~l~d 29 (30)
T smart00567 1 PLVRHEAAFALGQLGD----------EEAVPALIKALED 29 (30)
T ss_pred CHHHHHHHHHHHHcCC----------HhHHHHHHHHhcC
Confidence 6799999999998732 3345666665543
No 283
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=52.14 E-value=4.3e+02 Score=30.55 Aligned_cols=243 Identities=16% Similarity=0.124 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHh
Q 003195 172 RSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKE-TVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDI 250 (840)
Q Consensus 172 rvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~-~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~ 250 (840)
..|-.+...+.+.++..+. ...++||...-..++..++ .+|.+|.+++..+.+ .-+...+ ..-..+...
T Consensus 5 ~~R~~a~~~l~~~i~~~~~----~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~----~~~~~~~--~~R~~fF~~ 74 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPL----SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIK----RQDSSSG--LMRAEFFRD 74 (464)
T ss_pred HHHHHHHHHHHHHHHhCCc----hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHH----ccccccH--HHHHHHHHH
Confidence 3466666667776665543 5567899988887876644 589999888877643 2111000 000112222
Q ss_pred HHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhh------cccchh
Q 003195 251 VLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAAN------AGIQTE 324 (840)
Q Consensus 251 lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~------~~~~~~ 324 (840)
| .... ..++=+.|- ++|..+. .-|+++..+-.++.|.|..-+...-..+ ......+.. .+....
T Consensus 75 I----~~~~-~~~d~~~~l---~aL~~LT-~~Grdi~~~~~~i~~~L~~wl~~~~~~~-~~~r~~~~~~~~~~~~~~~~~ 144 (464)
T PF11864_consen 75 I----SDPS-NDDDFDLRL---EALIALT-DNGRDIDFFEYEIGPFLLSWLEPSYQAA-RSARRKAKKSSSSKSKGLSNL 144 (464)
T ss_pred H----hcCC-CchhHHHHH---HHHHHHH-cCCcCchhcccchHHHHHHHHHHHHHHH-HHHHHHhhccccccccccccc
Confidence 1 1111 111223343 3444443 3566667777777777776554211000 000000000 000000
Q ss_pred hhHHHHHhhccCCcHHHHHHHHHhh----cChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHH
Q 003195 325 KLENLRISIAKGSPMWDTLDLCINV----VDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSML 400 (840)
Q Consensus 325 ~~d~~R~~~~~~s~l~eal~~~~~~----~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~l 400 (840)
..+. .....+.+-+.+|+++ ++++.+..++..+....+.......=..|+.++..++. +|.-=......+
T Consensus 145 ~~~~-----~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~-y~~iP~~sl~~~ 218 (464)
T PF11864_consen 145 DNEE-----SNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIIT-YGDIPSESLSPC 218 (464)
T ss_pred cchh-----hhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH-cCcCChHHHHHH
Confidence 0000 0011234444555554 56777888888888876554222222466777665544 332222334455
Q ss_pred HHHHHHhHhhcCcHHHHHHHHHHHHHhhhcC-CHHHHHHHHHHH
Q 003195 401 LRLLFPVVKEEKSAAAKRAFASACASVLKYA-TPSQAQKLIEET 443 (840)
Q Consensus 401 L~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~-~~~~~~~li~~l 443 (840)
+..|-... ......+.++.++..|++.- +...+..+..-+
T Consensus 219 i~vLCsi~---~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL 259 (464)
T PF11864_consen 219 IEVLCSIV---NSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDIL 259 (464)
T ss_pred HHHHhhHh---cccccchhHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 55555554 12366778888888888644 344444444444
No 284
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=51.56 E-value=34 Score=31.47 Aligned_cols=69 Identities=10% Similarity=0.080 Sum_probs=39.9
Q ss_pred HHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHH--HHHHHHHhHhhcCcHHHHHHHHHHHHHhh
Q 003195 358 LVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSM--LLRLLFPVVKEEKSAAAKRAFASACASVL 428 (840)
Q Consensus 358 lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~--lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~ 428 (840)
++-.|.+.+.++.+..+-+-||.=|+.++..++.. +..+++ .=..+|..+ ++.++.||..|..|+..++
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-r~ii~~lg~K~~vM~Lm-~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-RNIIEKLGAKERVMELM-NHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-HHHHHHHSHHHHHHHHT-S-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-HHHHHhcChHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Confidence 44555555543323333445677788888776542 122221 223455666 7899999999999987775
No 285
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=50.82 E-value=2.1e+02 Score=27.60 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=43.9
Q ss_pred HHHHHHhhcChhhHhhHHHHHHHHHhc------cCCCchHh-HHHHHHHHHHHHhccCccccHHHHHHHHHHhH
Q 003195 342 TLDLCINVVDTESLDQLVPHLARLVRS------GIGLNTRV-GVASFISLLVQKIGMDIKPYTSMLLRLLFPVV 408 (840)
Q Consensus 342 al~~~~~~~d~~~l~~lvp~L~~~lk~------~~~~~~r~-~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l 408 (840)
+.-.++--+.+..+..+.-++.+--.. ..+...|. .-.+++..|..++..-|.||...+++.....|
T Consensus 44 ~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L 117 (153)
T PF08146_consen 44 AFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLL 117 (153)
T ss_pred HHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555554432 11223333 55688888999999999999999999988888
No 286
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=50.63 E-value=3.7e+02 Score=29.30 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=26.5
Q ss_pred cCHHHHHHH--HHHHHHHHHHcCCcchHHhHHHHHHhhccc
Q 003195 617 KIKKYREAA--FSCLEQVIKAFRDPKFFNIIFPLLFEMCGS 655 (840)
Q Consensus 617 ~~~~~R~~A--l~~L~~l~~~~~~~~l~~~v~~i~~~l~~~ 655 (840)
.+.-.|... -+++..+.+..+.+-+.+.+-|++..+.+.
T Consensus 69 ~~tLFRgNSlaTK~m~~y~k~~G~~YL~~tL~pvI~~i~~~ 109 (313)
T cd05394 69 ANTIFRGNSLATRCLDEMMKIVGKHYLKVTLKPVLDEICDS 109 (313)
T ss_pred HhhHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344555543 356777777666656788888999988765
No 287
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=50.20 E-value=62 Score=27.84 Aligned_cols=66 Identities=14% Similarity=0.051 Sum_probs=51.1
Q ss_pred HhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Q 003195 479 IVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAIC 544 (840)
Q Consensus 479 llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~ 544 (840)
+-|+..+..+..+.++|+...+....++.+.+..++.--+.|+..+.....+.+.++-..|+.++.
T Consensus 19 L~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 19 LKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 447766656667889999887777777766666777777888998888888888888888887764
No 288
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=50.05 E-value=2.2e+02 Score=27.68 Aligned_cols=75 Identities=9% Similarity=0.118 Sum_probs=48.3
Q ss_pred HHHHHHhhcCCC--CHhHHHHHHHHHHHhccCChHHHHHHH-HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCch
Q 003195 117 LIPKLVRFQYDP--DKNVQDAMAHIWKSLVADPKRTIDEHL-DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFD 191 (840)
Q Consensus 117 lvP~L~~~~~Dp--~~~VR~a~~~iw~~Lv~d~~~~i~~~~-~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~ 191 (840)
.+-|...|..-+ +++|.+.+..|...+|.+++..-.... +--++.|+..+.+.+.+++..+..-+..|+.+.+..
T Consensus 59 FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 59 FIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 344444443433 578888999999999987754222221 235666777777777888888877777776655433
No 289
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=49.92 E-value=1.2e+02 Score=28.15 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=32.8
Q ss_pred hhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHH
Q 003195 352 TESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTS 398 (840)
Q Consensus 352 ~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~ 398 (840)
...+.+++..|.+-+++. +..+|.-|+++|-.|+..-+..|...+.
T Consensus 33 ~~~~~ei~d~L~kRL~~~-~~hVK~K~Lrilk~l~~~G~~~f~~~~~ 78 (122)
T cd03572 33 VGSCQELLEYLLKRLKRS-SPHVKLKVLKIIKHLCEKGNSDFKRELQ 78 (122)
T ss_pred HHHHHHHHHHHHHHhcCC-CCcchHHHHHHHHHHHhhCCHHHHHHHH
Confidence 344667777777777765 6778899999998888776656644433
No 290
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=49.73 E-value=2.9e+02 Score=28.91 Aligned_cols=94 Identities=18% Similarity=0.151 Sum_probs=60.0
Q ss_pred hhhHHhHH-HHHHHHh---hhhhchhhh-hHHHHHHhhcC-CCCHhHHHHHHHHHHHhccCChHHHHHHH--HHHHHHHH
Q 003195 92 KRGAAFGF-SKIAKQA---GDALKPHLR-LLIPKLVRFQY-DPDKNVQDAMAHIWKSLVADPKRTIDEHL--DLIFDDLL 163 (840)
Q Consensus 92 r~gA~~~l-~~I~~~~---~~~l~~~l~-~lvP~L~~~~~-Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~--~~Il~~Ll 163 (840)
|-=-++++ ..++++. .-+++.+++ -++|.|-.... -|..-.|-+...++++|+++....+-.++ .+|+|..+
T Consensus 95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 33345555 5555554 124444444 46666654333 37788999999999999986544454454 46999999
Q ss_pred HhhCCCChhHHHHHHHHHHHHH
Q 003195 164 IQSGSRLWRSREASCLSLADII 185 (840)
Q Consensus 164 ~~l~~~~wrvR~aac~Al~~Ll 185 (840)
..|...+--.+..|..-+.-++
T Consensus 175 rime~GSelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKIL 196 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHh
Confidence 9998776666666665555554
No 291
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=49.58 E-value=1.7e+02 Score=27.48 Aligned_cols=76 Identities=11% Similarity=0.052 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhh--HHHHHHHHHHhcCCCC-ch-hHHHHHHHHHHHHHhcc
Q 003195 517 LGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNY--HHVLLESIMKEVPGRL-WE-GKDALLYAIGSISTSCH 592 (840)
Q Consensus 517 l~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~--l~~llp~L~~~l~~r~-~~-~Ke~vl~aL~~l~~~~~ 592 (840)
..+.+..+.+-+.+++..+...|...|..+++.+|..|... -..++..|.+.+..+. -+ +|+.++..+......++
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 34567788888999999999999999999999999877543 3557777777776654 23 78888888888777664
No 292
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=48.91 E-value=1.8e+02 Score=27.12 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHHhhhcCCCHHHHHHHHHHH
Q 003195 492 KYVSDLFEELWEENTSGDRVTLQLYL-GEIVSLICEGIASSSWSSKRKSAKAI 543 (840)
Q Consensus 492 ~~vr~~~~~i~~~~~~~~~~~i~~yl-~~Il~~l~~~L~d~s~~vR~~Aa~~L 543 (840)
+++.....+++...+.-.+ +.... .++++.+.+.+.+++ .|..|+.||
T Consensus 100 ~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 5555555555555554322 12222 358888888886665 477777765
No 293
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=48.65 E-value=1.4e+02 Score=28.92 Aligned_cols=132 Identities=17% Similarity=0.096 Sum_probs=64.3
Q ss_pred CcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcC-ChhhhHHHHHHHHHHHhhchhhhhhhH--hhHhHHHHHhhc
Q 003195 412 KSAAAKRAFASACASVLKYATPSQAQKLIEETAALHID-DKNSQISCAILLKSYSSVASDVLSGYH--AVIVPVIFISRF 488 (840)
Q Consensus 412 ~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~-d~~~r~~~~~~i~ai~~~~~~~f~~~~--~~llP~l~~~~~ 488 (840)
..+.+|..+..++..+.+..+++....+-+.+..+..+ +.+....+..++.++....++.-...+ +.+++.+.....
T Consensus 17 ~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~ 96 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLAS 96 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHh
Confidence 35678888888888776433333222222223233321 223444555666666555555433222 224443332222
Q ss_pred --CCchHHHHHHHHHHHHhcCCChhhHHhh-HHHHHHHHHhhhc-CCCHH-HHHHHHHHHHH
Q 003195 489 --EDDKYVSDLFEELWEENTSGDRVTLQLY-LGEIVSLICEGIA-SSSWS-SKRKSAKAICK 545 (840)
Q Consensus 489 --d~d~~vr~~~~~i~~~~~~~~~~~i~~y-l~~Il~~l~~~L~-d~s~~-vR~~Aa~~L~~ 545 (840)
..++.+...+.+++...+.. ...+.+ ...-++.+.+..+ +++.. +|..|+-+|..
T Consensus 97 ~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 97 RKSKDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp -CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 34555555555666544432 233333 3445666666664 44455 67777766653
No 294
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=48.44 E-value=97 Score=30.41 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=58.1
Q ss_pred HHHHHHHHHHH-HHhCcchhhhHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHHHhcccccccCCCCchHHHHH----HH
Q 003195 537 RKSAKAICKLG-EILGESLSNYHHVLLESIMKEVPGRL-WEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVD----MV 610 (840)
Q Consensus 537 ~~Aa~~L~~La-~~~~~~l~~~l~~llp~L~~~l~~r~-~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~----~l 610 (840)
+.|......|. ..+|+-+.|+++.++|...+.|...+ .+..+=+|..-++++.+..---...+...+..|+. .+
T Consensus 60 ~kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv 139 (174)
T PF04510_consen 60 VKAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSV 139 (174)
T ss_pred HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 55677777777 55777888999999999999997653 45554455444554433220000001123344444 44
Q ss_pred HHHHhhcCH-HHHHHHHHHHHHHHH
Q 003195 611 SSACRKKIK-KYREAAFSCLEQVIK 634 (840)
Q Consensus 611 ~~~~~~~~~-~~R~~Al~~L~~l~~ 634 (840)
.....+... ..-+.||.-+..++.
T Consensus 140 ~elV~~g~E~~~l~rgl~~~e~~v~ 164 (174)
T PF04510_consen 140 KELVERGMEVGFLRRGLRDFESFVS 164 (174)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHH
Confidence 444445554 777778877777765
No 295
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=47.93 E-value=5.5e+02 Score=30.56 Aligned_cols=135 Identities=13% Similarity=0.165 Sum_probs=77.6
Q ss_pred hhCCCCh--hHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003195 165 QSGSRLW--RSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAM-----DDIKETVRTAGDKLCRSVTSLTIRLCDVT 237 (840)
Q Consensus 165 ~l~~~~w--rvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~l-----dD~~~~VR~aA~~~~~~l~~~~ir~~~~~ 237 (840)
.+.+++| .-=-.-|+|+|.+-...+-..=..++-.++.-++.+. .|.|..|-.-. .-.++.. -|.+..
T Consensus 489 q~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnI---MyvvGQY-pRFLka- 563 (1053)
T COG5101 489 QLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNI---MYVVGQY-PRFLKA- 563 (1053)
T ss_pred HhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecce---eeeeccc-hHHHHH-
Confidence 4566666 4456789999998665554333455556666655543 35554442111 0001100 111110
Q ss_pred ccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccc--------cccchHHHHHHHHHhccCchhHhH
Q 003195 238 LTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIA--------IRPHLSDLVSCMLESLSSLEDQGL 309 (840)
Q Consensus 238 ~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~--------l~p~lp~Lv~~Ll~~ls~~ep~~~ 309 (840)
.-..+..++--|++ =+.++.+-|+..||+++.+++.+|+-. -.||+..++..+-..-.+.+|+..
T Consensus 564 ------hw~FLkTVv~KLFE-FMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~ 636 (1053)
T COG5101 564 ------HWSFLKTVVKKLFE-FMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQK 636 (1053)
T ss_pred ------HHHHHHHHHHHHHH-HHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHH
Confidence 11223333333332 123466789999999999999987632 368888888888888888888765
Q ss_pred HH
Q 003195 310 NY 311 (840)
Q Consensus 310 ~~ 311 (840)
..
T Consensus 637 ht 638 (1053)
T COG5101 637 HT 638 (1053)
T ss_pred hH
Confidence 43
No 296
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=47.85 E-value=1.7e+02 Score=26.31 Aligned_cols=76 Identities=12% Similarity=0.059 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccC--CCCchHHHHHHHHH--HHhhcCHHHHHHHHHHHHHH
Q 003195 557 YHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAE--DPTTPFAIVDMVSS--ACRKKIKKYREAAFSCLEQV 632 (840)
Q Consensus 557 ~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~--~~~~~~~i~~~l~~--~~~~~~~~~R~~Al~~L~~l 632 (840)
....++..|.+++..++|..+-..|..+-.++++|++.+..+ ...+...+++.... .-++.+..+|..+..++...
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 457799999999999999999999999999999998644210 00122222221000 01123668888888776554
No 297
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=47.77 E-value=1.5e+02 Score=27.97 Aligned_cols=77 Identities=9% Similarity=0.040 Sum_probs=58.7
Q ss_pred hHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHHHHHhcCCC-Cch---hHHHHHHHHHHHHH
Q 003195 516 YLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH--HVLLESIMKEVPGR-LWE---GKDALLYAIGSIST 589 (840)
Q Consensus 516 yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l--~~llp~L~~~l~~r-~~~---~Ke~vl~aL~~l~~ 589 (840)
...+.+..+.+.|.+.+..+...|...|..+++.+|..|...+ ..++..|.+.+..+ ... +|+.+++-+.....
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 3467788899999999999999999999999999998775432 34566666655433 223 89999988888887
Q ss_pred hcc
Q 003195 590 SCH 592 (840)
Q Consensus 590 ~~~ 592 (840)
.++
T Consensus 119 ~f~ 121 (140)
T PF00790_consen 119 AFK 121 (140)
T ss_dssp HTT
T ss_pred HHC
Confidence 764
No 298
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.50 E-value=8.2e+02 Score=32.45 Aligned_cols=97 Identities=18% Similarity=0.101 Sum_probs=69.2
Q ss_pred HHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHH
Q 003195 457 CAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSK 536 (840)
Q Consensus 457 ~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR 536 (840)
.+.++.+++...++.|.|+..+++ ....++....|-......+.++...+......+|+++|.+.+.+.|.+-.|.
T Consensus 1524 li~~i~~~~~a~~~d~~pl~~k~l----~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve 1599 (1621)
T KOG1837|consen 1524 LIAEIASDSVADKDDLKPLNQKIL----KKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVE 1599 (1621)
T ss_pred HHHHHHhhccCChhhhHHHHHHHH----HHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHH
Confidence 344555555556666666655544 2334555566655555555555555566778899999999999999999999
Q ss_pred HHHHHHHHHHHHHhCcchhhh
Q 003195 537 RKSAKAICKLGEILGESLSNY 557 (840)
Q Consensus 537 ~~Aa~~L~~La~~~~~~l~~~ 557 (840)
..+.+.+..+=...|+.+..|
T Consensus 1600 ~~~q~li~q~e~~lGE~l~~y 1620 (1621)
T KOG1837|consen 1600 CLCQKLIRQLEEVLGEPLQSY 1620 (1621)
T ss_pred HHHHHHHHHHHHHhchhhhhc
Confidence 999999999888999876543
No 299
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=47.32 E-value=2.1e+02 Score=27.18 Aligned_cols=75 Identities=15% Similarity=0.055 Sum_probs=56.8
Q ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHHHHHhcCC------CCchhHHHHHHHHHHHHH
Q 003195 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH--HVLLESIMKEVPG------RLWEGKDALLYAIGSIST 589 (840)
Q Consensus 518 ~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l--~~llp~L~~~l~~------r~~~~Ke~vl~aL~~l~~ 589 (840)
.+-+..+.+-+++.+..+-..|...|..+++.+|..|...+ ..++..|.+.+.. ....+|+.++.-+-....
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34667778888999999999999999999999998775432 4455566666642 236789999988888777
Q ss_pred hcc
Q 003195 590 SCH 592 (840)
Q Consensus 590 ~~~ 592 (840)
.++
T Consensus 117 ~f~ 119 (139)
T cd03567 117 ELP 119 (139)
T ss_pred Hhc
Confidence 664
No 300
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=47.31 E-value=61 Score=29.80 Aligned_cols=67 Identities=9% Similarity=0.084 Sum_probs=40.5
Q ss_pred HHHHHHHhh-CCCChhHHHHHHHHHHHHHccCCchhhhHHHH--HHHHHHHHHhccccHHHHHHHHHHHHHH
Q 003195 158 IFDDLLIQS-GSRLWRSREASCLSLADIIQGRKFDQVGKHLR--RIWTAAFRAMDDIKETVRTAGDKLCRSV 226 (840)
Q Consensus 158 Il~~Ll~~l-~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~--~l~~~l~~~ldD~~~~VR~aA~~~~~~l 226 (840)
++..|..-+ .+.+..+-.-||.-++.++...+.- ...+. ..=..+.++|.+..+.||..|..++..+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g--r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG--RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG--HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH--HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 444455555 3345677788999999998764321 11111 2223467778999999999886665444
No 301
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=47.24 E-value=8.2e+02 Score=32.42 Aligned_cols=99 Identities=15% Similarity=0.164 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHHHHHhCcch----hhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCC---chH
Q 003195 532 SWSSKRKSAKAICKLGEILGESL----SNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPT---TPF 604 (840)
Q Consensus 532 s~~vR~~Aa~~L~~La~~~~~~l----~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~---~~~ 604 (840)
.-.+|+.|.-+|-+|- +|+.- .--+...|..++.-|.... |.+++.+.+++++.. |.-|.. .+.
T Consensus 364 ~~aLRrYa~MALTNLT--FGDv~NKa~LCs~rgfMeavVAQL~s~p----eeL~QV~AsvLRNLS---WRAD~nmKkvLr 434 (2195)
T KOG2122|consen 364 CNALRRYAGMALTNLT--FGDVANKATLCSQRGFMEAVVAQLISAP----EELLQVYASVLRNLS---WRADSNMKKVLR 434 (2195)
T ss_pred HHHHHHHHHHHhhccc--cccccchhhhhhhhhHHHHHHHHHhcCh----HHHHHHHHHHHHhcc---ccccccHHHHHH
Confidence 4568888887776654 33311 1124667777777776543 566888999988764 422211 111
Q ss_pred HH--HHHHHHH-HhhcCHHHHHHHHHHHHHHHHHcCCc
Q 003195 605 AI--VDMVSSA-CRKKIKKYREAAFSCLEQVIKAFRDP 639 (840)
Q Consensus 605 ~i--~~~l~~~-~~~~~~~~R~~Al~~L~~l~~~~~~~ 639 (840)
.+ +.+|... ++.++...-++.+.+||.|...+-..
T Consensus 435 E~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteN 472 (2195)
T KOG2122|consen 435 ETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTEN 472 (2195)
T ss_pred hhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccccc
Confidence 11 2233332 32345577888999999999888653
No 302
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.02 E-value=6e+02 Score=30.72 Aligned_cols=129 Identities=13% Similarity=0.119 Sum_probs=78.6
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHccCCc----hhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003195 162 LLIQSGSRLWRSREASCLSLADIIQGRKF----DQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVT 237 (840)
Q Consensus 162 Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~----~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~ 237 (840)
|..++.-++..||..|..-|.++.--.++ +.....+..-+..+..++.|.-++||..|..-...+........
T Consensus 179 l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i--- 255 (1005)
T KOG1949|consen 179 LWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI--- 255 (1005)
T ss_pred HHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc---
Confidence 44567788899999999998888754433 33445555556666777889999999987543332222112222
Q ss_pred ccccchHHhHHHhHHHHHHhcccC-CchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcc
Q 003195 238 LTEISDARQSMDIVLPFLLAEGIL-SKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLS 302 (840)
Q Consensus 238 ~~~~~~~~~~l~~lLP~Ll~~gL~-s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls 302 (840)
+..++..+|..+... +. +++.+||-.....|..|+...- --|-+..++|.+--++.
T Consensus 256 ------P~~i~~~ll~kI~d~-~a~dt~s~VR~svf~gl~~~l~np~--sh~~le~~Lpal~~~l~ 312 (1005)
T KOG1949|consen 256 ------PPTILIDLLKKITDE-LAFDTSSDVRCSVFKGLPMILDNPL--SHPLLEQLLPALRYSLH 312 (1005)
T ss_pred ------CHHHHHHHHHHHHHH-hhhccchheehhHhcCcHHHHcCcc--chhHHHHHHHhcchhhh
Confidence 223455556655542 32 3456899988888888875432 22444555555544443
No 303
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=46.71 E-value=1.3e+02 Score=27.20 Aligned_cols=71 Identities=13% Similarity=0.005 Sum_probs=48.8
Q ss_pred hHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHH--HHHHHHHH----hcCCC--CchhHHHHHHHHHH
Q 003195 516 YLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHH--VLLESIMK----EVPGR--LWEGKDALLYAIGS 586 (840)
Q Consensus 516 yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~--~llp~L~~----~l~~r--~~~~Ke~vl~aL~~ 586 (840)
...+++..+.+-|.+.+|.+...|...|..+++..|+.|...+. ..+..+.+ ...++ ...+|+.+++.+..
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999987765421 12222222 12222 34567666655543
No 304
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=46.42 E-value=56 Score=28.49 Aligned_cols=58 Identities=5% Similarity=0.073 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcc
Q 003195 534 SSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCH 592 (840)
Q Consensus 534 ~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~ 592 (840)
..|+++..+|++++...+..+.++++.++..|.+...+ ....+..+=++|..+-+...
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCc
Confidence 45788889999999999999999999999998888775 55678888888888876443
No 305
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=45.91 E-value=2e+02 Score=26.85 Aligned_cols=103 Identities=11% Similarity=0.134 Sum_probs=66.5
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHH
Q 003195 527 GIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAI 606 (840)
Q Consensus 527 ~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i 606 (840)
.+.+++|..=- -+++++..-+. .-...+..|.+++..++..+.-..|..|-.++++|+..+..+-. -...
T Consensus 12 ~l~~~dw~~~l----~icD~i~~~~~----~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~--s~~f 81 (133)
T smart00288 12 SLLEEDWELIL----EICDLINSTPD----GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVA--SKEF 81 (133)
T ss_pred CCCCcCHHHHH----HHHHHHhCCCc----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH--hHHH
Confidence 34566775422 34444443221 23667888999999888888888888889999999875532100 1223
Q ss_pred HHHHHHHHhhc-C-HHHHHHHHHHHHHHHHHcCCc
Q 003195 607 VDMVSSACRKK-I-KKYREAAFSCLEQVIKAFRDP 639 (840)
Q Consensus 607 ~~~l~~~~~~~-~-~~~R~~Al~~L~~l~~~~~~~ 639 (840)
+..+.+.++++ . +.+|..++.++......++++
T Consensus 82 l~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~ 116 (133)
T smart00288 82 LNELVKLIKPKYPLPLVKKRILELIQEWADAFKND 116 (133)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 33444444433 2 349999999999999999764
No 306
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=45.34 E-value=1.6e+02 Score=28.57 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=57.0
Q ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHh-cCCC--CchhHHHHHHHHHHHHH
Q 003195 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKE-VPGR--LWEGKDALLYAIGSIST 589 (840)
Q Consensus 518 ~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~-l~~r--~~~~Ke~vl~aL~~l~~ 589 (840)
..+.+.+.+.+.+++..+=..+...+..+....+..+...++.+++.+... +..+ +...|+.+++++..+++
T Consensus 72 ~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 72 DDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 456677777777777888888999999999998888887788888888774 4433 34589999999999985
No 307
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=45.28 E-value=33 Score=24.04 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=22.7
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 003195 520 IVSLICEGIASSSWSSKRKSAKAICKLG 547 (840)
Q Consensus 520 Il~~l~~~L~d~s~~vR~~Aa~~L~~La 547 (840)
.++.+.+.+.+.++++++.++.+|+.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4555666677889999999999999876
No 308
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=44.84 E-value=86 Score=27.37 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=32.5
Q ss_pred CCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHH
Q 003195 168 SRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKET 214 (840)
Q Consensus 168 ~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~ 214 (840)
+..|..|+-|+.-++.++...+ +.+..--+.+...+.+.+.|++..
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~-~~~~~L~~Ri~~tl~k~l~d~~~~ 62 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFS-SSYPTLQPRITRTLLKALLDPKKP 62 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHcCCCCC
Confidence 5689999999999999987533 123333347777888888876543
No 309
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=43.20 E-value=5.2e+02 Score=28.90 Aligned_cols=141 Identities=11% Similarity=0.073 Sum_probs=79.9
Q ss_pred hhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcc--hhhh--------------HHHHHHHHHHhcCCC-C
Q 003195 511 VTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES--LSNY--------------HHVLLESIMKEVPGR-L 573 (840)
Q Consensus 511 ~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~--l~~~--------------l~~llp~L~~~l~~r-~ 573 (840)
..+......=++.+...+-+..-++|..|..++..+...++.. +... .+.+.+.|.+-+.++ .
T Consensus 167 ~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~ 246 (372)
T PF12231_consen 167 QQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDE 246 (372)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCC
Confidence 3343344434445555555667778888766666666656542 1111 111222233333331 1
Q ss_pred chhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCcc------hHHhHHH
Q 003195 574 WEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPK------FFNIIFP 647 (840)
Q Consensus 574 ~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~~------l~~~v~~ 647 (840)
...=-.+..++..+..... + +.-++....+++...+.+..++.+|..|+.+=..++.+...++ +.-+..|
T Consensus 247 ~~~a~~iW~~~i~LL~~~~--~--~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~P 322 (372)
T PF12231_consen 247 YKLAMQIWSVVILLLGSSR--L--DSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQP 322 (372)
T ss_pred cchHHHHHHHHHHHhCCch--h--hccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Confidence 1111245555666653221 1 1226788999988888888899999999999999998775532 2234467
Q ss_pred HHHhhccc
Q 003195 648 LLFEMCGS 655 (840)
Q Consensus 648 i~~~l~~~ 655 (840)
+...+..+
T Consensus 323 l~~~l~~~ 330 (372)
T PF12231_consen 323 LSSQLRRE 330 (372)
T ss_pred HHHHhCcc
Confidence 76666544
No 310
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=42.82 E-value=4.4e+02 Score=27.95 Aligned_cols=189 Identities=15% Similarity=0.053 Sum_probs=105.8
Q ss_pred HHHhccCcc-ccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHH-----------HHHHHHHHHHhhcCCh--
Q 003195 386 VQKIGMDIK-PYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQ-----------AQKLIEETAALHIDDK-- 451 (840)
Q Consensus 386 ~~~~~~~~~-p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~-----------~~~li~~l~~~~~~d~-- 451 (840)
....+..-. .-.+.+.+.+++++ ++..-.+....-+..++...+++. +-..+|.+...+..+.
T Consensus 50 ~~~~p~~we~~~f~Glq~Ll~KGL---~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i 126 (262)
T PF14225_consen 50 ESSQPQLWEWGNFEGLQPLLLKGL---RSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPI 126 (262)
T ss_pred HHhCCccccCCCchhHHHHHhCcc---CCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccc
Confidence 344444432 33445888888888 344445566666777766544322 2334455555553222
Q ss_pred ---hhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchH-HHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhh
Q 003195 452 ---NSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKY-VSDLFEELWEENTSGDRVTLQLYLGEIVSLICEG 527 (840)
Q Consensus 452 ---~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~-vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~ 527 (840)
..-..++..+..++...+. +.+.+++-..-.+++.+.++ ++..+.-+-+... ..|--+++..+...
T Consensus 127 ~~~~~~~~~A~~La~~a~~~~~---~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-------P~~~~~~l~~Ll~l 196 (262)
T PF14225_consen 127 QPDQECIEIAEALAQVAEAQGL---PNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-------PDHEFQILTFLLGL 196 (262)
T ss_pred cccHHHHHHHHHHHHHHHhCCC---ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-------chhHHHHHHHHHHH
Confidence 2234455666666643321 33444554433445533222 4444333322222 23445677777788
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhc
Q 003195 528 IASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSC 591 (840)
Q Consensus 528 L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~ 591 (840)
+.....-+|......|..+.....-. .++-+.++..+.+-+++.-|.. +++.|-.+...+
T Consensus 197 L~n~~~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~~~~e---AL~VLd~~v~~s 256 (262)
T PF14225_consen 197 LENGPPWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTDLWME---ALEVLDEIVTRS 256 (262)
T ss_pred HhCCcHHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCccHHH---HHHHHHHHHhhc
Confidence 87777789999999998888765433 4467778888888888877754 344444444433
No 311
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=40.38 E-value=60 Score=25.09 Aligned_cols=44 Identities=34% Similarity=0.391 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHh--hhcccccccccchhhhhHHHHHhhhhHhHHHHHHHHHHHhccccc
Q 003195 777 SASECLLEICKLF--RQISSVYSSNIGIKGELVHQCEMEKNMEAKSLLKKCIDILENLEV 834 (840)
Q Consensus 777 ~a~~~l~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (840)
.++.-|-+|+..+ ++.|. ++.+.+| ++|..++|.|.+.|++.+.
T Consensus 3 e~~~~Le~Iv~~Le~~~~sL---------des~~ly-----eeg~~l~~~c~~~L~~~e~ 48 (53)
T PF02609_consen 3 EAMERLEEIVEKLESGELSL---------DESLKLY-----EEGMELIKKCQERLEEAEQ 48 (53)
T ss_dssp HHHHHHHHHHHHHHTT-S-H---------HHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCH---------HHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 4666777888888 33454 6666666 4799999999999987653
No 312
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=40.21 E-value=5.3e+02 Score=28.16 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=35.8
Q ss_pred hHHHHHHHHhhhcCCCCCCCccchhHHHHHHHhh-h-----hhhhhhhcccchhhhhhHhhhHHHHHHHHHhhh
Q 003195 724 WTELCSRLQKTLDDSAGTSPHAGISSLIQELFHT-V-----SPKVVECISTVKIAQVHISASECLLEICKLFRQ 791 (840)
Q Consensus 724 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~k~~~vr~~a~~~l~~i~~~~~~ 791 (840)
...+|.++.+.+..-.|......+...-+=+|-+ + .|....-.+..-.++.| |..+.++.++.++++
T Consensus 156 lr~i~~~l~~~v~~kFp~~~~~~~~~V~gfiFLRfi~PAIvsP~~f~l~~~~p~~~~r-R~L~lIaKvLQnlaN 228 (315)
T cd05128 156 MCDIFYQLRERVGERFPGDPDVQYLAVSSFLFLRFFAPAILSPKLFHLRPHHADARTS-RTLLLLSKAVQTLGN 228 (315)
T ss_pred HHHHHHHHHHHHHHHCCCCccchHHHHHHHHHHHHHhHHhcChHhcCCCCCCCCHHHH-HHHHHHHHHHHHHhC
Confidence 3478888888777433332111112222223443 2 34433333333345555 799999999999865
No 313
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=38.84 E-value=56 Score=27.79 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=35.3
Q ss_pred HhhhHHHHHHHHHh--hhcccccccccchhhhhHHHHHhhhhHhHHHHHHHHHHHhccccc
Q 003195 776 ISASECLLEICKLF--RQISSVYSSNIGIKGELVHQCEMEKNMEAKSLLKKCIDILENLEV 834 (840)
Q Consensus 776 ~~a~~~l~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (840)
+.|+..|=+|+..| |+.|+ ++.+.+|| +|..++|.|...|++-+.
T Consensus 13 Eea~~~LEeIv~~LE~~~l~L---------ees~~lye-----eg~~L~k~C~~~L~~ae~ 59 (80)
T PRK00977 13 EEALAELEEIVTRLESGDLPL---------EESLAAFE-----RGVALARQCQKKLQQAEQ 59 (80)
T ss_pred HHHHHHHHHHHHHHHCCCCCH---------HHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 56788888999999 44666 67777775 788999999999887653
No 314
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=38.05 E-value=6.2e+02 Score=29.64 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhccccccchHHHHHHHH
Q 003195 271 SIGVVMKLVKGAGIAIRPHLSDLVSCML 298 (840)
Q Consensus 271 al~~L~~la~~~g~~l~p~lp~Lv~~Ll 298 (840)
.+..+..+....+..+.||+|.+++.|.
T Consensus 182 LLrvlS~Vye~~P~~i~PhlP~l~~lL~ 209 (851)
T KOG3723|consen 182 LLRVLSAVYEKQPQPINPHLPELLALLS 209 (851)
T ss_pred HHHHHHHHHhcCCCccCcccHHHHHHhc
Confidence 4566777777888899999998888765
No 315
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=37.54 E-value=5.2e+02 Score=27.35 Aligned_cols=183 Identities=13% Similarity=0.065 Sum_probs=89.3
Q ss_pred HhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCc--------cccHHHHHHHHHHhHhhcCc----HHHHHHHHH
Q 003195 355 LDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDI--------KPYTSMLLRLLFPVVKEEKS----AAAKRAFAS 422 (840)
Q Consensus 355 l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~--------~p~~~~lL~~Ll~~l~~d~~----~~Vr~~a~~ 422 (840)
++-+.+.+.++++++. +-..+++++..|+.-....+ --..=..+|.++..+ ++.+ .......|.
T Consensus 62 f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~-d~~~~i~~~~~~~~~A~ 137 (262)
T PF14225_consen 62 FEGLQPLLLKGLRSSS---TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAF-DDPNPIQPDQECIEIAE 137 (262)
T ss_pred chhHHHHHhCccCCCC---cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHh-cccccccccHHHHHHHH
Confidence 3445566666665542 22345555555543221111 111224566666666 3343 133456678
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHhhchhhhh-hhHhhHhHHHHHhhcCCchHHHHHHHHH
Q 003195 423 ACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLS-GYHAVIVPVIFISRFEDDKYVSDLFEEL 501 (840)
Q Consensus 423 Alg~l~~~~~~~~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~~~f~-~~~~~llP~l~~~~~d~d~~vr~~~~~i 501 (840)
+++.+++..+...+.+++......-+.+ ..+.+..+.++..+.|- .|-..++-+++.......+.+|....++
T Consensus 138 ~La~~a~~~~~~~La~il~~ya~~~fr~------~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~i 211 (262)
T PF14225_consen 138 ALAQVAEAQGLPNLARILSSYAKGRFRD------KDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQI 211 (262)
T ss_pred HHHHHHHhCCCccHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 8888886656555555554433222222 12333333333344442 2222333333222233445566655566
Q ss_pred HHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhC
Q 003195 502 WEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILG 551 (840)
Q Consensus 502 ~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~ 551 (840)
...+.+...-. +++.++++..+.+.++++.|. .|...+..+....|
T Consensus 212 L~~ll~~~d~~-~~~~~dlispllrlL~t~~~~---eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 212 LKVLLPHVDMR-SPHGADLISPLLRLLQTDLWM---EALEVLDEIVTRSG 257 (262)
T ss_pred HHHHhccccCC-CCcchHHHHHHHHHhCCccHH---HHHHHHHHHHhhcc
Confidence 65555543211 346677788888888887763 34455555554443
No 316
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=37.53 E-value=6.8e+02 Score=28.64 Aligned_cols=235 Identities=8% Similarity=0.017 Sum_probs=110.2
Q ss_pred HHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCH----HHHHHHHHHHHHhhc--CChhhhHHHHHHHHHHHhhchhhhhh
Q 003195 401 LRLLFPVVKEEKSAAAKRAFASACASVLKYATP----SQAQKLIEETAALHI--DDKNSQISCAILLKSYSSVASDVLSG 474 (840)
Q Consensus 401 L~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~----~~~~~li~~l~~~~~--~d~~~r~~~~~~i~ai~~~~~~~f~~ 474 (840)
...+++.+ +..+.-+...++..+..++...+. .....+.+.+.+.+. .+.+....+..++..+.+.-.-+..-
T Consensus 103 ~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f 181 (429)
T cd00256 103 WEPFFNLL-NRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAF 181 (429)
T ss_pred hHHHHHHH-cCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHH
Confidence 34445555 344556666677777777654322 122334455555553 23455666778888876643322111
Q ss_pred hHhhHhHHHHHh-hcCC-chHHH-HHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCC-CHHHHHHHHHHHHHHHHHh
Q 003195 475 YHAVIVPVIFIS-RFED-DKYVS-DLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASS-SWSSKRKSAKAICKLGEIL 550 (840)
Q Consensus 475 ~~~~llP~l~~~-~~d~-d~~vr-~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~-s~~vR~~Aa~~L~~La~~~ 550 (840)
+-...++.+... +... .-.+. ....-+|---........ ..-..+++.+.+.+++. -.++=|-+..++-++....
T Consensus 182 ~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~-~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~ 260 (429)
T cd00256 182 VLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEV-LKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKR 260 (429)
T ss_pred HHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHh-hccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcc
Confidence 111122322211 1111 11211 223355632111100111 11134666666666553 4677777888888888753
Q ss_pred Cc-----chhh-hHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhccc-----------------------------cc
Q 003195 551 GE-----SLSN-YHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHK-----------------------------DI 595 (840)
Q Consensus 551 ~~-----~l~~-~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~-----------------------------~~ 595 (840)
.+ .+.+ .+..=++.+.+.|.+|.|.- +++.+.+..+-....+ .+
T Consensus 261 ~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~D-edL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~F 339 (429)
T cd00256 261 VDREVKKTAALQMVQCKVLKTLQSLEQRKYDD-EDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKF 339 (429)
T ss_pred cccchhhhHHHHHHHcChHHHHHHHhcCCCCc-HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchH
Confidence 21 1111 12211234566677776643 3344444333322211 11
Q ss_pred ccCCC----CchHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHcCC
Q 003195 596 SAEDP----TTPFAIVDMVSSACRK-KIKKYREAAFSCLEQVIKAFRD 638 (840)
Q Consensus 596 ~~~~~----~~~~~i~~~l~~~~~~-~~~~~R~~Al~~L~~l~~~~~~ 638 (840)
|.++. .---++++.+.+-+.. +++.+-.-|+.=+|++++..|.
T Consensus 340 W~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~ 387 (429)
T cd00256 340 WRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPR 387 (429)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCcc
Confidence 11000 0113566666666632 3556666777778888888875
No 317
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=36.02 E-value=2.8e+02 Score=26.33 Aligned_cols=120 Identities=12% Similarity=0.149 Sum_probs=69.4
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHHHHHhcccccccC--CCCch
Q 003195 527 GIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVP-GRLWEGKDALLYAIGSISTSCHKDISAE--DPTTP 603 (840)
Q Consensus 527 ~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~-~r~~~~Ke~vl~aL~~l~~~~~~~~~~~--~~~~~ 603 (840)
.+..++|..=- -|++++.. ++ . .-...+..|.+++. +++..+---.|..+-+++++||..+..+ ...|+
T Consensus 13 ~l~~~dw~~il----eicD~In~-~~-~--~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl 84 (141)
T cd03565 13 SLQSEDWGLNM----EICDIINE-TE-D--GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFI 84 (141)
T ss_pred CCCCcCHHHHH----HHHHHHhC-CC-C--cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhh
Confidence 44556775422 34444432 11 1 23677888888886 4555555556777788899998755311 11344
Q ss_pred HH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCcchHHhHHHHHHhhccc
Q 003195 604 FA-IVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGS 655 (840)
Q Consensus 604 ~~-i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~~l~~~ 655 (840)
.. +++.+... ......++...+..+......|+++.-...+......+...
T Consensus 85 ~e~L~~~i~~~-~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L~~~ 136 (141)
T cd03565 85 KDVLVKLINPK-NNPPTIVQEKVLALIQAWADAFRGSPDLTGVVEVYEELKKK 136 (141)
T ss_pred hHHHHHHHccc-CCCcHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHc
Confidence 44 44433210 01245899999999999999998753333344444444433
No 318
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=34.98 E-value=6.2e+02 Score=27.49 Aligned_cols=163 Identities=12% Similarity=0.159 Sum_probs=98.4
Q ss_pred HHHHHhhhcCCchHHHHHHHHhccccchhhhhhHHhHHHHHHHHhh---hhhchhh---hhHHHHHHhhcCCCCHhHHHH
Q 003195 62 ELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAG---DALKPHL---RLLIPKLVRFQYDPDKNVQDA 135 (840)
Q Consensus 62 ~l~~lA~~~g~p~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~---~~l~~~l---~~lvP~L~~~~~Dp~~~VR~a 135 (840)
...-|++++-+.++.+.++.-...- .|++|+-++.-+..+...-- .....|+ +++++.|+.++++ .+.+.-+
T Consensus 67 ~~~qLtqef~~~~~l~~lI~~l~~l-~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~ 144 (342)
T KOG1566|consen 67 AVAQLTQEFYNADVLSLLIQHLPKL-EFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALT 144 (342)
T ss_pred HHHHHHHHHHhCCchHHHHHhhhcc-cchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHH
Confidence 5677899998888887777655443 48899999888888876431 1112233 4788888888776 4444333
Q ss_pred HH-----------------------------------------HHHHHhccCChH----HHHHHHHHHHHHHHHh-hCCC
Q 003195 136 MA-----------------------------------------HIWKSLVADPKR----TIDEHLDLIFDDLLIQ-SGSR 169 (840)
Q Consensus 136 ~~-----------------------------------------~iw~~Lv~d~~~----~i~~~~~~Il~~Ll~~-l~~~ 169 (840)
.. .+++.+...-+. .+..+.+.+.++.-+. +.++
T Consensus 145 cg~mlrEcirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~ 224 (342)
T KOG1566|consen 145 CGNMLRECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE 224 (342)
T ss_pred HHHHHHHHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc
Confidence 21 111222111111 2233444555553333 4567
Q ss_pred ChhHHHHHHHHHHHHHccCCch-hhhHHHH--HHHHHHHHHhccccHHHHHHHHHHHHHH
Q 003195 170 LWRSREASCLSLADIIQGRKFD-QVGKHLR--RIWTAAFRAMDDIKETVRTAGDKLCRSV 226 (840)
Q Consensus 170 ~wrvR~aac~Al~~Ll~~~~~~-~l~~~L~--~l~~~l~~~ldD~~~~VR~aA~~~~~~l 226 (840)
++-+|.-+..++++++.+++-. .+..|.. +-+..+...|.|.....+-.|-...+.+
T Consensus 225 Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvf 284 (342)
T KOG1566|consen 225 NYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVF 284 (342)
T ss_pred ceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHH
Confidence 7878888888999999887644 4556655 4445555556777766666666665554
No 319
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=34.97 E-value=8.4e+02 Score=28.96 Aligned_cols=203 Identities=12% Similarity=0.187 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhccC-cc-ccHHHHHHHHHHhHhh-cCc------H----HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 003195 379 ASFISLLVQKIGMD-IK-PYTSMLLRLLFPVVKE-EKS------A----AAKRAFASACASVLKYATPSQAQKLIEETAA 445 (840)
Q Consensus 379 ~~~l~~L~~~~~~~-~~-p~~~~lL~~Ll~~l~~-d~~------~----~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~ 445 (840)
|+++..+....+.+ +. ...+++...++.++.. |+. . .+-.-+++-+|.+.+..=...-+.++..+.+
T Consensus 13 CrvLieil~q~~~~~l~~~l~~~le~i~F~~lk~~d~~~~~~~~s~~~~~~~~l~AellG~lS~~rF~sVsdRF~~eL~~ 92 (552)
T PF14222_consen 13 CRVLIEILKQSPLHSLTEELGDKLEEIVFDQLKTADPVSEQPSTSPLRLANWDLFAELLGVLSEIRFVSVSDRFIAELEK 92 (552)
T ss_pred HHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhccCccccccccchhHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHH
Confidence 44444444444422 22 2244666666666631 221 1 3335556666666554322223445544443
Q ss_pred hhcCChhhhHHHHHHHHHHH----hhc-hhhhh---hhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcC----CChh--
Q 003195 446 LHIDDKNSQISCAILLKSYS----SVA-SDVLS---GYHAVIVPVIFISRFEDDKYVSDLFEELWEENTS----GDRV-- 511 (840)
Q Consensus 446 ~~~~d~~~r~~~~~~i~ai~----~~~-~~~f~---~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~----~~~~-- 511 (840)
.-.+..+.+.....++.++- +.. .+.|. .++..+.++ |...| ...+++..+.+++.++.- ....
T Consensus 93 ~~~~~~~~~~~~~~li~GMr~lrlk~~p~e~~e~s~~Fm~~l~~~-f~~~h-~~~~ik~A~~~~l~~lLlPvA~~~~~ev 170 (552)
T PF14222_consen 93 LRKDSNDAESKIELLIMGMRYLRLKMYPEEAFEESAEFMQSLAKF-FLEAH-KKSDIKHAYCEVLVELLLPVAATATAEV 170 (552)
T ss_pred hcccCCchHHHHHHHHhhcceeeecCCCHHHHHHHHHHHHHHHHH-HHhcc-hhhHHHHHHHHHHHHHHHHHhhcccccc
Confidence 33211233334444555441 112 23443 233334443 22233 455677777666665421 1101
Q ss_pred ---hHHhhHHHHHHHHHhhhcC-CCHHHHHHHHHHHHHHHHHhC-cchhhhHH-HHHHHHHHhcCCCCchhHHHHHHHHH
Q 003195 512 ---TLQLYLGEIVSLICEGIAS-SSWSSKRKSAKAICKLGEILG-ESLSNYHH-VLLESIMKEVPGRLWEGKDALLYAIG 585 (840)
Q Consensus 512 ---~i~~yl~~Il~~l~~~L~d-~s~~vR~~Aa~~L~~La~~~~-~~l~~~l~-~llp~L~~~l~~r~~~~Ke~vl~aL~ 585 (840)
.....+..|.+.+.+.... .+|.. |+-.+..+--..+ +.|..+-. .++..+...+++| ..|-.++.++.
T Consensus 171 n~P~W~~~v~~i~~~~~~~~~K~khw~~---afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~ 245 (552)
T PF14222_consen 171 NHPKWKEAVETIYPRAAKMMSKPKHWNV---AFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALECLS 245 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHhCcchhhh---HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHH
Confidence 2234445555554444433 34544 4444443333333 45555555 5777778888887 55767777766
Q ss_pred HHH
Q 003195 586 SIS 588 (840)
Q Consensus 586 ~l~ 588 (840)
-++
T Consensus 246 RLl 248 (552)
T PF14222_consen 246 RLL 248 (552)
T ss_pred HHH
Confidence 654
No 320
>PF10798 YmgB: Biofilm development protein YmgB/AriR; InterPro: IPR024753 YmgB is part of the three gene cluster ymgABC which has a role in biofilm development and stability. YmgB represses biofilm formation in rich medium containing glucose, decreases cellular motility and also protects the cell from acid, which indicates that YmgB has an important function in acid-resistance []. YmgB binds as a dimer to genes which are important for biofilm formation via a ligand. Due to its important function in acid resistance it is also known as AriR (regulator of acid resistance influenced by indole) [].; GO: 0042710 biofilm formation, 0071229 cellular response to acid; PDB: 2OXL_B.
Probab=34.90 E-value=91 Score=25.04 Aligned_cols=47 Identities=23% Similarity=0.301 Sum_probs=33.0
Q ss_pred HHHHHHHHHh-hh-cccccccccchhhhhHHHHHhhhhHhHHHHHHHHHHHh
Q 003195 780 ECLLEICKLF-RQ-ISSVYSSNIGIKGELVHQCEMEKNMEAKSLLKKCIDIL 829 (840)
Q Consensus 780 ~~l~~i~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (840)
..||.++..+ .+ .|. .+...+-.|.+.+|+|++..-...+++++++.
T Consensus 5 ~vL~~iv~ell~~g~~v---snKaII~~LI~~LE~e~Dv~~~dvyR~~LEiV 53 (61)
T PF10798_consen 5 EVLGAIVRELLASGGHV---SNKAIILKLIHRLESESDVVQLDVYRNALEIV 53 (61)
T ss_dssp HHHHHHHHHHHHTT------SHHHHHHHHHHHHHT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 4577777666 32 332 36778889999999999999999999999876
No 321
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=33.47 E-value=1.1e+03 Score=30.02 Aligned_cols=238 Identities=11% Similarity=0.021 Sum_probs=0.0
Q ss_pred chHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHh---hcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 003195 373 NTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVK---EEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHID 449 (840)
Q Consensus 373 ~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~---~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~ 449 (840)
..|..-+.++..|+.+++..=..|-+.++..++.+|. ..+-..+|-.+.-++-.+.
T Consensus 170 ~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklm--------------------- 228 (1048)
T KOG2011|consen 170 NFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLM--------------------- 228 (1048)
T ss_pred HHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHH---------------------
Q ss_pred ChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhh-
Q 003195 450 DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGI- 528 (840)
Q Consensus 450 d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L- 528 (840)
.++..++.........--+++- +-......-|.-...+......- .....-+.+++..+.+..
T Consensus 229 ---------t~Lv~va~~Ls~~~~~tskQle-----aEr~k~r~~rarle~Ll~~r~et--qe~~d~i~~mi~~if~sVF 292 (1048)
T KOG2011|consen 229 ---------TALVSVALNLSSHNDKTSKQLE-----AERNKSRGNRARLESLLMLRKET--QEQQDEIESMINDIFDSVF 292 (1048)
T ss_pred ---------HHHHHHHHHHHHhhHHHHHHHH-----HHhcccccchHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhee
Q ss_pred ----cCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchH
Q 003195 529 ----ASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPF 604 (840)
Q Consensus 529 ----~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~ 604 (840)
.|-..++|.-+...||..+..+++.|.. ...+..+-=.|.+++-++|-..+.+|..|.++ +.+.....-|..
T Consensus 293 VHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~--dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~--~~~~~~L~lFts 368 (1048)
T KOG2011|consen 293 VHRYRDVDPDIRAICIQELGIWIKSYPEIFLS--DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK--DEDKDKLELFTS 368 (1048)
T ss_pred eeecccCchHHHHHHHHHHHHHHHhccHHHhc--chHHHHhcceeecCccHHHHHHHHHHHHHHhc--cccchHHHHHHH
Q ss_pred HHHHHHHHHH-hhcCHHHHHHHHHHHHHH--HHHcCCcchHHhHHHHHHh
Q 003195 605 AIVDMVSSAC-RKKIKKYREAAFSCLEQV--IKAFRDPKFFNIIFPLLFE 651 (840)
Q Consensus 605 ~i~~~l~~~~-~~~~~~~R~~Al~~L~~l--~~~~~~~~l~~~v~~i~~~ 651 (840)
.....++..+ ++-+..+|..++..+-.. ...++++++..++.-|...
T Consensus 369 RFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~d~di~~Vy~Li~d~ 418 (1048)
T KOG2011|consen 369 RFKDRIVEMADRDRNVSVRAVGLVLCLLLSSSGLLSDKDILIVYSLIYDS 418 (1048)
T ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHhcccccChhHHHHHHHHHhcc
No 322
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=33.23 E-value=4.2e+02 Score=25.10 Aligned_cols=76 Identities=7% Similarity=0.033 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhhc-CCCHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHH-HHHhcCCC---CchhHHHHHHHHHHHHH
Q 003195 517 LGEIVSLICEGIA-SSSWSSKRKSAKAICKLGEILGESLSNYH--HVLLES-IMKEVPGR---LWEGKDALLYAIGSIST 589 (840)
Q Consensus 517 l~~Il~~l~~~L~-d~s~~vR~~Aa~~L~~La~~~~~~l~~~l--~~llp~-L~~~l~~r---~~~~Ke~vl~aL~~l~~ 589 (840)
..+.+..+.+-+. +.+..+-..|...|..+++.+|..|...+ ..++.. |.+.+..+ ...+|..+++-+-....
T Consensus 36 ~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 36 PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 3456677777776 46788888899999999999998775432 355554 66666543 24789999988888887
Q ss_pred hcc
Q 003195 590 SCH 592 (840)
Q Consensus 590 ~~~ 592 (840)
.++
T Consensus 116 ~f~ 118 (141)
T cd03565 116 AFR 118 (141)
T ss_pred HhC
Confidence 665
No 323
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=32.78 E-value=85 Score=25.69 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=33.3
Q ss_pred HhhhHHHHHHHHHh--hhcccccccccchhhhhHHHHHhhhhHhHHHHHHHHHHHhccccc
Q 003195 776 ISASECLLEICKLF--RQISSVYSSNIGIKGELVHQCEMEKNMEAKSLLKKCIDILENLEV 834 (840)
Q Consensus 776 ~~a~~~l~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (840)
+.++.-|=+|+..| ++.|+ ++.+.+|| ++-.++|.|.+.|++-+.
T Consensus 4 Ee~l~~Le~Iv~~LE~~~l~L---------eesl~lye-----eG~~L~k~c~~~L~~ae~ 50 (67)
T TIGR01280 4 EEALSELEQIVQKLESGDLAL---------EEALNLFE-----RGMALARRCEKKLAQAEQ 50 (67)
T ss_pred HHHHHHHHHHHHHHHCCCCCH---------HHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 35667778888888 44665 66666664 788999999999987653
No 324
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=32.19 E-value=1.4e+03 Score=30.68 Aligned_cols=165 Identities=13% Similarity=0.110 Sum_probs=89.1
Q ss_pred HHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHH
Q 003195 464 YSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAI 543 (840)
Q Consensus 464 i~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L 543 (840)
.....+..++.|++.++-+.-..+...++.+++.-...|..+-.... + -+-.+++..+...+.+.+..---+|-..|
T Consensus 421 ~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd-s--~~qqeVv~~Lvthi~sg~~~ev~~aL~vL 497 (1426)
T PF14631_consen 421 TFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD-S--YCQQEVVGALVTHIGSGNSQEVDAALDVL 497 (1426)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS--H--HHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc-c--hhHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 33334556677777777766555677788888765555554333321 1 13467777777776554443335778889
Q ss_pred HHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHH
Q 003195 544 CKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYRE 623 (840)
Q Consensus 544 ~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~ 623 (840)
..|+...++.+.+|..-|.+.| ..+..=+..-=..++..|..++-.-.. .......++--.+.+++...+.+|++
T Consensus 498 ~~L~~~~~~~l~~fa~~l~giL-D~l~~Ls~~qiR~lf~il~~La~~~~~----~~s~i~del~ivIRKQLss~~~~~K~ 572 (1426)
T PF14631_consen 498 CELAEKNPSELQPFATFLKGIL-DYLDNLSLQQIRKLFDILCTLAFSDSS----SSSSIQDELHIVIRKQLSSSNPKYKR 572 (1426)
T ss_dssp HHHHHH-HHHHHHTHHHHHGGG-GGGGG--HHHHHHHHHHHHHHHHHHSS-------HHHHHHHHHHHHHHT-SSHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHhcCCcc----cchhhHHHHHHHHHHhhcCCcHHHHH
Confidence 9999887777777644443333 333322222222345555555422111 01122345555566688778888877
Q ss_pred HHHHHHHHHHHHc
Q 003195 624 AAFSCLEQVIKAF 636 (840)
Q Consensus 624 ~Al~~L~~l~~~~ 636 (840)
..+-..-.+++.+
T Consensus 573 ~GIIGav~~i~~l 585 (1426)
T PF14631_consen 573 IGIIGAVMMIKHL 585 (1426)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHH
Confidence 6655544555544
No 325
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.75 E-value=3.4e+02 Score=33.39 Aligned_cols=96 Identities=18% Similarity=0.250 Sum_probs=54.6
Q ss_pred hhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhc----ccCCchhH
Q 003195 191 DQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAE----GILSKVDS 266 (840)
Q Consensus 191 ~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~----gL~s~~~e 266 (840)
+.+.+++..-|..-++..+|+..+++.-..+++...... .+..+...+=|.|+.- +..-+...
T Consensus 737 ~~l~n~fk~~~~~~~k~iE~is~s~s~l~s~l~e~Yi~~-------------k~~~i~~alEp~~~~~~~~W~~~~~~~~ 803 (934)
T KOG2347|consen 737 PTLLNIFKYTWLLSRKNIEDISMSLSGLGSKLFENYIED-------------KADPIRGALEPYLLDGGIQWGMAPPVKG 803 (934)
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHH-------------hhhhhhhcccchhhccccccccCCCccc
Confidence 345555666666666666666655555443333322111 1334555566665432 22335678
Q ss_pred HHHHHHHHHHHHHHhhccccccchHHHHHHHHHh
Q 003195 267 ISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLES 300 (840)
Q Consensus 267 vr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ 300 (840)
||.++.+++..++..-.+.+ -+.|+|++..|..
T Consensus 804 irdYa~E~l~~lV~VhaEvf-~iap~Ll~kiL~~ 836 (934)
T KOG2347|consen 804 IRDYAKEALHNLVAVHAEVF-AIAPQLLDKILGE 836 (934)
T ss_pred hHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHH
Confidence 99999999999887655433 3445666666543
No 326
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=30.41 E-value=8.1e+02 Score=27.41 Aligned_cols=94 Identities=14% Similarity=0.128 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHhc--CCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 003195 557 YHHVLLESIMKEV--PGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIK 634 (840)
Q Consensus 557 ~l~~llp~L~~~l--~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~ 634 (840)
.++.++|.+.+.+ -+..+.+|.-+.+.+..+++.|...- .....+++..++..-.++.-..|-..-+..+..++.
T Consensus 253 ~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~---~~~~~~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~ 329 (373)
T PF14911_consen 253 LLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGS---SGEPREQLTSVLRSFVQKYLAHYTYQYFQFLEKVAE 329 (373)
T ss_pred HHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccC---cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 4667777777775 34467889999999999998886321 123345555666666656666777788888888886
Q ss_pred HcCCcchHHhHHHHHHhhcc
Q 003195 635 AFRDPKFFNIIFPLLFEMCG 654 (840)
Q Consensus 635 ~~~~~~l~~~v~~i~~~l~~ 654 (840)
--|+ -+..+++.+-+.+.+
T Consensus 330 l~p~-lV~~Lip~i~q~l~~ 348 (373)
T PF14911_consen 330 LDPQ-LVISLIPTIRQSLKD 348 (373)
T ss_pred hCHH-HHHHHHHHHHHHHHH
Confidence 4332 234444444444443
No 327
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=29.39 E-value=2.1e+02 Score=24.61 Aligned_cols=56 Identities=14% Similarity=0.142 Sum_probs=41.5
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChh
Q 003195 117 LIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWR 172 (840)
Q Consensus 117 lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wr 172 (840)
+-|..+-+..-++..||+-..+|...++......+..-++.|+.-+-....+.+-.
T Consensus 19 L~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~ 74 (86)
T PF09324_consen 19 LKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDES 74 (86)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCcc
Confidence 45666666778999999999999999987655566666788777666666654433
No 328
>cd05136 RasGAP_DAB2IP The DAB2IP family of Ras GTPase-activating proteins includes DAB2IP, nGAP, and Syn GAP. Disabled 2 interactive protein, (DAB2IP; also known as ASK-interacting protein 1 (AIP1)), is a member of the GTPase-activating proteins, down-regulates Ras-mediated signal pathways, and mediates TNF-induced activation of ASK1-JNK signaling pathways. The mechanism by which TNF signaling is coupled to DAB2IP is not known.
Probab=29.30 E-value=7.7e+02 Score=26.81 Aligned_cols=24 Identities=21% Similarity=0.113 Sum_probs=10.4
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHH
Q 003195 422 SACASVLKYATPSQAQKLIEETAA 445 (840)
Q Consensus 422 ~Alg~l~~~~~~~~~~~li~~l~~ 445 (840)
.+++...+..+.+.+.+.+.++++
T Consensus 78 K~~~~y~k~~G~~YL~~~L~p~I~ 101 (309)
T cd05136 78 KAIEEYLKLVGQDYLQDTLGEFIR 101 (309)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 329
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=29.20 E-value=8.2e+02 Score=27.21 Aligned_cols=127 Identities=13% Similarity=0.165 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhhc-CCCHHHHHHHHHHHHHHHH----HhCcchhhhHHHHHHHHHHhcCCC--------------CchhH
Q 003195 517 LGEIVSLICEGIA-SSSWSSKRKSAKAICKLGE----ILGESLSNYHHVLLESIMKEVPGR--------------LWEGK 577 (840)
Q Consensus 517 l~~Il~~l~~~L~-d~s~~vR~~Aa~~L~~La~----~~~~~l~~~l~~llp~L~~~l~~r--------------~~~~K 577 (840)
..+.++.+.++++ +.+|+|=.....-|...-. ..|.. +..+...|.+.+.++ .-|..
T Consensus 139 is~~~~~il~~L~~e~dWeV~s~VL~hLp~qL~Nk~Lf~~~~----I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~ 214 (356)
T PF03542_consen 139 ISEWFSVILQCLEHETDWEVYSYVLVHLPSQLSNKALFLGAD----IDQLRNALCSMICDRSFLESLSNKPTGFKRADLQ 214 (356)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhHHhccCc----HHHHHHHHHHHHhcccccccccCCCCCCCHHHHH
Confidence 3445566666664 5688887654433332222 12222 344444444333221 12334
Q ss_pred HHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCcchHHhHHHHHHhhccc
Q 003195 578 DALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGS 655 (840)
Q Consensus 578 e~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~~l~~~ 655 (840)
..++.+|..|+.- +..+.+ ..-++|++++..-+..+ .-+.|+.+|.--+-.+|+ .+...+++|+.++...
T Consensus 215 ~~~~~~Ls~LisY-h~~~~k---~~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~EmP~-s~~k~L~~iL~kLs~i 284 (356)
T PF03542_consen 215 VCVFPVLSALISY-HSHFSK---QEQDEIVRALESGLGSK---TAKPCIHALTICCYEMPD-SMKKLLPSILLKLSKI 284 (356)
T ss_pred HHHHHHHHHHHHH-HHhcCH---hHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHhh
Confidence 5566667666642 222321 34578888887766443 345567777777777775 6777778888888544
No 330
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=27.69 E-value=8.2e+02 Score=26.62 Aligned_cols=40 Identities=15% Similarity=0.314 Sum_probs=27.3
Q ss_pred hcCHHHHHHH--HHHHHHHHHHcCCcchHHhHHHHHHhhccc
Q 003195 616 KKIKKYREAA--FSCLEQVIKAFRDPKFFNIIFPLLFEMCGS 655 (840)
Q Consensus 616 ~~~~~~R~~A--l~~L~~l~~~~~~~~l~~~v~~i~~~l~~~ 655 (840)
+.+.-.|... -+++..+.+..+.+-+.+.+-|++..+.+.
T Consensus 68 ~~~tLFRgNSlaTK~m~~y~k~~G~~YL~~tL~pvI~~i~~~ 109 (310)
T cd05134 68 DPNTIFRGNSLTSKCIDETMKLAGMHYLQVTLKPIIDEICQE 109 (310)
T ss_pred CcchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444555544 356777777776666788888999988765
No 331
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=27.35 E-value=1.2e+03 Score=28.24 Aligned_cols=242 Identities=14% Similarity=0.095 Sum_probs=0.0
Q ss_pred hhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHc
Q 003195 107 GDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQ 186 (840)
Q Consensus 107 ~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~ 186 (840)
+-.++..|.-++.++ +||+|..++++.+..+..+..+ ..-..-.+.=+++|-..... |.++.+
T Consensus 43 D~~lk~dLellVerv----qdpd~~Lq~~aLe~lr~~irsS-tSSmtsvpkPlKFLrphy~~------------Lk~i~~ 105 (878)
T KOG2005|consen 43 DLQLKGDLELLVERV----QDPDPDLQKAALESLREEIRSS-TSSMTSVPKPLKFLRPHYGV------------LKEIYE 105 (878)
T ss_pred HHHhhhhHHHHHHHh----cCCChHHHHHHHHHHHHHHHhc-ccccccCCchhhhhccchhH------------HHHHHH
Q ss_pred cCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHh----cccCC
Q 003195 187 GRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLA----EGILS 262 (840)
Q Consensus 187 ~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~----~gL~s 262 (840)
.........++.+|+..+--.++..+...|=.-......++.| +.+++..+.-.+-+ ++...
T Consensus 106 ~~~~~n~Kk~laDIlSvLamt~se~~~~l~YRl~G~~~d~~~W--------------GHeYVRhLageIaee~~~~~~e~ 171 (878)
T KOG2005|consen 106 SMADSNLKKWLADILSVLAMTMSERGEHLAYRLLGSIIDLGSW--------------GHEYVRHLAGEIAEEYNNREMEA 171 (878)
T ss_pred hccCchhHhHHHHHHHHHheeecccchheeeeeccccCChhhh--------------HHHHHHHHHHHHHHHHhhccccc
Q ss_pred ch-hHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHH
Q 003195 263 KV-DSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWD 341 (840)
Q Consensus 263 ~~-~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~e 341 (840)
++ ++++..+.+++--..+.-++. +-+..|++.=.
T Consensus 172 ~~~~dl~~l~~~iV~f~mkHNAE~------eAiDlL~Eve~--------------------------------------- 206 (878)
T KOG2005|consen 172 PSKADLLDLVQEIVPFHMKHNAEF------EAIDLLMEVEG--------------------------------------- 206 (878)
T ss_pred cchHHHHHHHHHHHHHHHhccchh------HHHHHHHHhhh---------------------------------------
Q ss_pred HHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHH----HHHHHHhHhhcCcHHHH
Q 003195 342 TLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSML----LRLLFPVVKEEKSAAAK 417 (840)
Q Consensus 342 al~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~l----L~~Ll~~l~~d~~~~Vr 417 (840)
|+.+++++|......+.-.+.....-- ..|.-++-.++.-.+-.+++..-.....-+ ++...+.+.+-.++..+
T Consensus 207 -id~l~~~Vd~~n~~RvclYl~sc~~~l-P~Pdd~~ll~~a~~IYlKf~~~~~al~~ai~l~~~~~v~~vf~s~~D~~~k 284 (878)
T KOG2005|consen 207 -IDLLLDYVDEHNYQRVCLYLTSCVPLL-PGPDDVALLRTALKIYLKFNEYPRALVGAIRLDDMKEVKEVFTSCTDPLLK 284 (878)
T ss_pred -HhHHHHHhhhhhHHHHHHHHHHHhhcC-CCchhhHHHHHHHHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHhccCHHHH
Q ss_pred HHHHHHHHH
Q 003195 418 RAFASACAS 426 (840)
Q Consensus 418 ~~a~~Alg~ 426 (840)
|.++.-+++
T Consensus 285 KQ~~ymLaR 293 (878)
T KOG2005|consen 285 KQMAYMLAR 293 (878)
T ss_pred HHHHHHHHh
No 332
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.13 E-value=5.7e+02 Score=29.57 Aligned_cols=123 Identities=13% Similarity=0.180 Sum_probs=75.1
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCch
Q 003195 524 ICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTP 603 (840)
Q Consensus 524 l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~ 603 (840)
....+.+++|.+=- -|++++..-... -+.++-.|.+++..++..+.--+|..|-.++++|+..+..+ ---
T Consensus 10 T~~~l~~pDWa~Nl----eIcD~IN~~~~~----~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~--Va~ 79 (470)
T KOG1087|consen 10 TSESLAEPDWALNL----EICDLINSTEGG----PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQ--VAS 79 (470)
T ss_pred hcccccCccHHHHH----HHHHHHhcCccC----cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHH--HHH
Confidence 34566778887644 355555443322 24788889999998877555555666667788898765310 001
Q ss_pred HHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHcCC-cchHHhHHHHHHhhcccc
Q 003195 604 FAIVDMVSSACRKK--IKKYREAAFSCLEQVIKAFRD-PKFFNIIFPLLFEMCGST 656 (840)
Q Consensus 604 ~~i~~~l~~~~~~~--~~~~R~~Al~~L~~l~~~~~~-~~l~~~v~~i~~~l~~~~ 656 (840)
..+++-+++..+.+ ..++|..+|..+...-.++++ +.-...+..+...+.-++
T Consensus 80 k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~~~~~~~~~~~~y~~l~~~G 135 (470)
T KOG1087|consen 80 KEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCGPDGYLPDYYQIYDELRRKG 135 (470)
T ss_pred HHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccCCCCcchhHHHHHHHHHHcC
Confidence 23333444444443 569999999999999999988 332333334444444333
No 333
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=27.00 E-value=1.2e+03 Score=28.40 Aligned_cols=82 Identities=9% Similarity=0.005 Sum_probs=57.5
Q ss_pred hcCChhhhHHHHHHHHHHHhhchhhhhhhHh-hHhHHHHHh-hcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHH
Q 003195 447 HIDDKNSQISCAILLKSYSSVASDVLSGYHA-VIVPVIFIS-RFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLI 524 (840)
Q Consensus 447 ~~~d~~~r~~~~~~i~ai~~~~~~~f~~~~~-~llP~l~~~-~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l 524 (840)
|+..+..|..+..+++.+.+.-+..+-...+ .+++-++.. ++|.+..+-....-++-.+.|-.+..+.+|++.|+.+.
T Consensus 78 ~~~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If 157 (668)
T PF04388_consen 78 YFVKPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIF 157 (668)
T ss_pred HHcCchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Confidence 4456788998889999888765543322221 234444443 56777776666667777888888888999999999998
Q ss_pred Hhhh
Q 003195 525 CEGI 528 (840)
Q Consensus 525 ~~~L 528 (840)
...+
T Consensus 158 ~Rl~ 161 (668)
T PF04388_consen 158 GRLL 161 (668)
T ss_pred HHHH
Confidence 8876
No 334
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=26.65 E-value=3.8e+02 Score=25.43 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=41.5
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCch-hhhHH
Q 003195 118 IPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFD-QVGKH 196 (840)
Q Consensus 118 vP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~-~l~~~ 196 (840)
.-.+++...++++.||..+.+|+-+-- + ..+..|-+. |..-++|+.+| +. |..+....... .-..+
T Consensus 19 ~~~~~~LL~~~d~~vQklAL~cll~~k-~--~~l~pY~d~----L~~Lldd~~fr--de----L~~f~~~~~~~~I~~eh 85 (141)
T PF07539_consen 19 YDALLRLLSSRDPEVQKLALDCLLTWK-D--PYLTPYKDN----LENLLDDKTFR--DE----LTTFNLSDESSVIEEEH 85 (141)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC-c--HHHHhHHHH----HHHHcCcchHH--HH----HHhhcccCCcCCCCHHH
Confidence 333445579999999999988765532 2 234444433 44445565444 21 22232222111 12355
Q ss_pred HHHHHHHHHHHh
Q 003195 197 LRRIWTAAFRAM 208 (840)
Q Consensus 197 L~~l~~~l~~~l 208 (840)
-+.++|.++|.+
T Consensus 86 R~~l~pvvlRIL 97 (141)
T PF07539_consen 86 RPELMPVVLRIL 97 (141)
T ss_pred HhHHHHHHHHHH
Confidence 666777766654
No 335
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=26.16 E-value=2.3e+02 Score=25.51 Aligned_cols=69 Identities=13% Similarity=0.052 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH-HHHHHHHHHhcCCCCchhHHHHHHH
Q 003195 515 LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH-HVLLESIMKEVPGRLWEGKDALLYA 583 (840)
Q Consensus 515 ~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l-~~llp~L~~~l~~r~~~~Ke~vl~a 583 (840)
.+.++|+..+.+.+.....+.|-.+.+.+.++++..+.....+. ..+.+.+......-..+.|+.+..-
T Consensus 33 ~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl 102 (114)
T cd03562 33 KHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERL 102 (114)
T ss_pred HHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 56778888888888877778899999999999998876544432 3335555555555455666554443
No 336
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=25.58 E-value=3.1e+02 Score=26.97 Aligned_cols=58 Identities=21% Similarity=0.298 Sum_probs=38.6
Q ss_pred hhcCCchHHHHHHHHhccccchhhhhhHHhHHHHHH-HHhhhhhchhhhhHHHHHHhhcCCCCH
Q 003195 68 NEMGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIA-KQAGDALKPHLRLLIPKLVRFQYDPDK 130 (840)
Q Consensus 68 ~~~g~p~lv~~fm~la~~~~~w~sr~gA~~~l~~I~-~~~~~~l~~~l~~lvP~L~~~~~Dp~~ 130 (840)
++-||++|-.-+.+++++.. +-|+.=|..+- .--++.+.|.+..++|..++.+.+|..
T Consensus 40 ~~~~W~eL~d~Ils~~~~e~-----~kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p~~ 98 (174)
T PF04510_consen 40 QEGGWDELSDCILSLSENEP-----VKAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLPPEE 98 (174)
T ss_pred CCCCchhHHHHHHHhhccch-----HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCCchh
Confidence 33477777777776664331 23444443332 224678999999999999999999963
No 337
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=25.45 E-value=6.1e+02 Score=24.37 Aligned_cols=116 Identities=7% Similarity=-0.001 Sum_probs=65.7
Q ss_pred ChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhH-HhhH-HHHHHHHHhh
Q 003195 450 DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTL-QLYL-GEIVSLICEG 527 (840)
Q Consensus 450 d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i-~~yl-~~Il~~l~~~ 527 (840)
.++.|..+..++..+....++.|......++-..+. ..+.++.++. ..+...+.++.+... ..|. +.+++.+...
T Consensus 18 ~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~-~~~~d~~i~~--~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 18 PEEVRSHALVILSKLLDAAREEFKEKISDFIESLLD-EGEMDSLIIA--FSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHCCHHHHH--HHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-cccchhHHHH--HHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 467788877777777666777776666655543331 1122333332 255566666654322 2222 3455666666
Q ss_pred hc--CCCHHHHHHHHHHHHHHHHH--hCcchhhhHHHHHHHHHHhcCC
Q 003195 528 IA--SSSWSSKRKSAKAICKLGEI--LGESLSNYHHVLLESIMKEVPG 571 (840)
Q Consensus 528 L~--d~s~~vR~~Aa~~L~~La~~--~~~~l~~~l~~llp~L~~~l~~ 571 (840)
.. ..+..+...+..+|..-|.. ....+ ...-++.|.+.++.
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I---~~~~~~~L~~~~~~ 139 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAACIDKSCRTFI---SKNYVSWLKELYKN 139 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCC---HHHCHHHHHHHTTT
T ss_pred HhcccCCHHHHHHHHHHHHHHHccHHHHHHH---HHHHHHHHHHHHcc
Confidence 66 66777888888888877632 22222 45556667777753
No 338
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=25.22 E-value=6.9e+02 Score=24.88 Aligned_cols=123 Identities=10% Similarity=0.100 Sum_probs=69.0
Q ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCC-----CCchhHHHHHHHHHHHHHhccc
Q 003195 519 EIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPG-----RLWEGKDALLYAIGSISTSCHK 593 (840)
Q Consensus 519 ~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~-----r~~~~Ke~vl~aL~~l~~~~~~ 593 (840)
+++..+.+.....=-+||..|..++..+. ..+..-.++++ =.+.|.+.+.. -.|..-...+..+..+...
T Consensus 7 ~~~~~llrqa~EKiDrvR~~A~~~l~~ll-~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~--- 81 (193)
T PF12612_consen 7 QIIGGLLRQAAEKIDRVREVAGKCLQRLL-HSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLDL--- 81 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhcc---
Confidence 34444444444444679999999999998 33322112222 12334444432 2376655666666655421
Q ss_pred ccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcC--CcchHHhHHHHHHhh
Q 003195 594 DISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFR--DPKFFNIIFPLLFEM 652 (840)
Q Consensus 594 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~--~~~l~~~v~~i~~~l 652 (840)
+.|...++.-++--+...+....+.|..+|-+++.... ...+..++..++..+
T Consensus 82 ------~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il 136 (193)
T PF12612_consen 82 ------PEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSIL 136 (193)
T ss_pred ------HHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 13566777767766666777888888888888887432 223444444444444
No 339
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=25.08 E-value=9.1e+02 Score=26.24 Aligned_cols=213 Identities=15% Similarity=0.138 Sum_probs=110.2
Q ss_pred CCChhHHHHHHHHHHHHHc-cCCchhhhHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHHHHhhhccccccchHH
Q 003195 168 SRLWRSREASCLSLADIIQ-GRKFDQVGKHLRRIWTAAFRAMDDIK-ETVRTAGDKLCRSVTSLTIRLCDVTLTEISDAR 245 (840)
Q Consensus 168 ~~~wrvR~aac~Al~~Ll~-~~~~~~l~~~L~~l~~~l~~~ldD~~-~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~ 245 (840)
.++|----++-.-+...++ ....-.+.|+=..+-..+.++|+-.= ..|..-|.+....+-+.+ .+..- ..+..
T Consensus 22 ~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~i----g~~~L-~~dl~ 96 (307)
T PF04118_consen 22 SSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERI----GPDGL-AQDLP 96 (307)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhc----CHHHH-HhhcH
Confidence 4567655555544555555 22222344554566666777776432 246665555554442211 10000 01122
Q ss_pred hHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhh
Q 003195 246 QSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEK 325 (840)
Q Consensus 246 ~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~ 325 (840)
-...-++|++-. .+-.||...++.+-+-.-..|+.++|.++.++..++..+.+...+..
T Consensus 97 i~~~GLfpl~~~-----asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~---------------- 155 (307)
T PF04118_consen 97 IYSPGLFPLFSY-----ASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFF---------------- 155 (307)
T ss_pred HHHHHHHHHHHH-----HHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHH----------------
Confidence 244556666531 23467777777766665566778888888888888876664332221
Q ss_pred hHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhc------------cCc
Q 003195 326 LENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIG------------MDI 393 (840)
Q Consensus 326 ~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~------------~~~ 393 (840)
+. ++..++.+...++.+ .+...+-..+.+ ....|.+|+.++..-..+.. .-+
T Consensus 156 -~~----------~~~ll~~l~~~v~~~---~F~~~lwl~ii~--sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~ 219 (307)
T PF04118_consen 156 -DR----------TLKLLDKLKEAVGDK---YFWQCLWLCIIT--SPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCL 219 (307)
T ss_pred -HH----------HHHHHHHHHHhcChh---HHHHHHHHHHhc--CcchhHHHHHHHHHhCCcccccccccchHHHHHhc
Confidence 11 122344444444443 233444433332 23567888887743222211 112
Q ss_pred cccHHHHHHHHHHhHhhcCcHHHHHHHHHH
Q 003195 394 KPYTSMLLRLLFPVVKEEKSAAAKRAFASA 423 (840)
Q Consensus 394 ~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~A 423 (840)
.|-.+-+++++...+ .|.+.-|++.+..-
T Consensus 220 ~~~~~Llv~al~~~L-~D~~iLVqR~~LDl 248 (307)
T PF04118_consen 220 GPDPGLLVRALCACL-EDENILVQRGFLDL 248 (307)
T ss_pred CCCccHHHHHHHHHh-CCchHHHHHHHHHH
Confidence 344556777777777 67777776665433
No 340
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=24.89 E-value=3.6e+02 Score=26.62 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=34.8
Q ss_pred hhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhcc
Q 003195 90 NSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVA 145 (840)
Q Consensus 90 ~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~ 145 (840)
+.||.+..++..-..+ +.+...+++.+-+...|+..-||.|++.+.+.+..
T Consensus 120 ~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~ 170 (197)
T cd06561 120 WVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGK 170 (197)
T ss_pred HHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 3455555444332222 34566677777788899999999999988887664
No 341
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=24.26 E-value=92 Score=20.23 Aligned_cols=13 Identities=31% Similarity=0.307 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHH
Q 003195 173 SREASCLSLADII 185 (840)
Q Consensus 173 vR~aac~Al~~Ll 185 (840)
||.++..+|+.+-
T Consensus 1 VR~~Aa~aLg~ig 13 (27)
T PF03130_consen 1 VRRAAARALGQIG 13 (27)
T ss_dssp HHHHHHHHHGGG-
T ss_pred CHHHHHHHHHHcC
Confidence 6889999998873
No 342
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.93 E-value=1.6e+02 Score=24.76 Aligned_cols=45 Identities=22% Similarity=0.194 Sum_probs=34.2
Q ss_pred HhhhHHHHHHHHHh--hhcccccccccchhhhhHHHHHhhhhHhHHHHHHHHHHHhccccc
Q 003195 776 ISASECLLEICKLF--RQISSVYSSNIGIKGELVHQCEMEKNMEAKSLLKKCIDILENLEV 834 (840)
Q Consensus 776 ~~a~~~l~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (840)
+.++.-|=+|+..| |+.|+ ++.+.+|| ++-.++|.|-+.|.+-+.
T Consensus 9 Ee~l~~LE~IV~~LE~~~l~L---------eesl~~ye-----~G~~L~k~c~~~L~~ae~ 55 (75)
T PRK14064 9 EEAIAELETIVEALENGSASL---------EDSLDMYQ-----KGIELTKLCQDKLQSAEK 55 (75)
T ss_pred HHHHHHHHHHHHHHHCCCCCH---------HHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 46777788889888 44665 66667764 788999999999887653
No 343
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.71 E-value=3.1e+02 Score=31.67 Aligned_cols=76 Identities=12% Similarity=0.062 Sum_probs=62.1
Q ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhh--HHHHHHHHHHhcCCC--CchhHHHHHHHHHHHHHhccc
Q 003195 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNY--HHVLLESIMKEVPGR--LWEGKDALLYAIGSISTSCHK 593 (840)
Q Consensus 518 ~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~--l~~llp~L~~~l~~r--~~~~Ke~vl~aL~~l~~~~~~ 593 (840)
++.+..+.+-+.+.+..+...|...|..+++.+|+.|... -..+++.+++..+.+ ...+|+.||..+-+.-..++.
T Consensus 37 ~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 37 KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 4778888899998888999999999999999999988643 367888888888654 578999999888887776653
No 344
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=23.43 E-value=6.4e+02 Score=23.87 Aligned_cols=104 Identities=11% Similarity=0.127 Sum_probs=65.8
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccC--CCCchH
Q 003195 527 GIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAE--DPTTPF 604 (840)
Q Consensus 527 ~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~--~~~~~~ 604 (840)
.+.+++|..=- -+++++..-+. --...+..|.++++.++..+---.|..|-+++++|+..+..+ ...|+.
T Consensus 13 ~l~~~dw~~il----eicD~In~~~~----~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 13 SNREEDWEAIQ----AFCEQINKEPE----GPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred cCCCCCHHHHH----HHHHHHHcCCc----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 34566775322 34444432221 135677888889988887777777777788899998755321 113445
Q ss_pred HHHHHHHHHH--hhcCHHHHHHHHHHHHHHHHHcCC
Q 003195 605 AIVDMVSSAC--RKKIKKYREAAFSCLEQVIKAFRD 638 (840)
Q Consensus 605 ~i~~~l~~~~--~~~~~~~R~~Al~~L~~l~~~~~~ 638 (840)
.+++.+-.-. ......+|...+.++......++.
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPH 120 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 5555442110 124679999999999999999975
No 345
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=23.37 E-value=4e+02 Score=24.39 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhh---CCCChhHHHHHHHHHHHHHccCC
Q 003195 154 HLDLIFDDLLIQS---GSRLWRSREASCLSLADIIQGRK 189 (840)
Q Consensus 154 ~~~~Il~~Ll~~l---~~~~wrvR~aac~Al~~Ll~~~~ 189 (840)
.+..||..|...+ ..++||+..-|...+--|+..-+
T Consensus 36 ~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~ 74 (125)
T PF01417_consen 36 DCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGS 74 (125)
T ss_dssp HHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-
T ss_pred cHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCC
Confidence 5666777777777 77889999888888877776544
No 346
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.94 E-value=1.6e+02 Score=30.46 Aligned_cols=53 Identities=15% Similarity=0.072 Sum_probs=37.3
Q ss_pred cchhHHHHHHHhhhhhhhhhhcccchhhhhhHhhhHHHH---HHHHHhhhcccccccccchhhhhHHHHHhh
Q 003195 745 AGISSLIQELFHTVSPKVVECISTVKIAQVHISASECLL---EICKLFRQISSVYSSNIGIKGELVHQCEME 813 (840)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~vr~~a~~~l~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (840)
.+.+.-+.+.++++... --+.|+.||- +|...||.+ ++-..+..||.+.||+|
T Consensus 71 hDaat~YveA~~cykk~------------~~~eAv~cL~~aieIyt~~Grf----~~aAk~~~~iaEiyEsd 126 (288)
T KOG1586|consen 71 HDAATTYVEAANCYKKV------------DPEEAVNCLEKAIEIYTDMGRF----TMAAKHHIEIAEIYESD 126 (288)
T ss_pred hhHHHHHHHHHHHhhcc------------ChHHHHHHHHHHHHHHHhhhHH----HHHHhhhhhHHHHHhhh
Confidence 45666788999988832 1235666665 666777743 34678888999999998
No 347
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.88 E-value=1.6e+02 Score=25.13 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=33.0
Q ss_pred HhhhHHHHHHHHHh--hhcccccccccchhhhhHHHHHhhhhHhHHHHHHHHHHHhccccc
Q 003195 776 ISASECLLEICKLF--RQISSVYSSNIGIKGELVHQCEMEKNMEAKSLLKKCIDILENLEV 834 (840)
Q Consensus 776 ~~a~~~l~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (840)
+.++.-|-+|+..| ++.|+ ++.+.+|| ++-.++|.|...|+.-+.
T Consensus 10 Eeal~~LEeIV~~LE~~~l~L---------ees~~lye-----eG~~L~k~C~~~L~~ae~ 56 (80)
T PRK14067 10 EQQLARLQEIVDALEGGDLPL---------EESVALYK-----EGLGLARACREQLAKARN 56 (80)
T ss_pred HHHHHHHHHHHHHHHCCCCCH---------HHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 45677778888888 44555 66666664 788999999998876553
No 348
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.47 E-value=1.9e+02 Score=24.35 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=33.2
Q ss_pred HhhhHHHHHHHHHh--hhcccccccccchhhhhHHHHHhhhhHhHHHHHHHHHHHhcccc
Q 003195 776 ISASECLLEICKLF--RQISSVYSSNIGIKGELVHQCEMEKNMEAKSLLKKCIDILENLE 833 (840)
Q Consensus 776 ~~a~~~l~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (840)
+.++.-|-+|+..| |+.|+ ++.+.+|| ++-.++|.|-..|++-+
T Consensus 9 Eeal~~Le~IV~~LE~gdl~L---------eesl~lye-----eG~~L~k~C~~~L~~ae 54 (76)
T PRK14068 9 EEMMQELEQIVQKLDNETVSL---------EESLDLYQ-----RGMKLSAACDTTLKNAE 54 (76)
T ss_pred HHHHHHHHHHHHHHHcCCCCH---------HHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 56777788888888 44666 56666664 78899999999988754
No 349
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.39 E-value=1.6e+02 Score=24.65 Aligned_cols=45 Identities=22% Similarity=0.221 Sum_probs=33.3
Q ss_pred HhhhHHHHHHHHHh--hhcccccccccchhhhhHHHHHhhhhHhHHHHHHHHHHHhccccc
Q 003195 776 ISASECLLEICKLF--RQISSVYSSNIGIKGELVHQCEMEKNMEAKSLLKKCIDILENLEV 834 (840)
Q Consensus 776 ~~a~~~l~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (840)
+.|+.-|=+|+..| |+.|+ ++.+.+|| ++-.++|.|-+.|..-+.
T Consensus 7 Eeal~~LE~IV~~LE~g~l~L---------eesl~lye-----eG~~L~k~C~~~L~~ae~ 53 (75)
T PRK14066 7 ETALKKLEEVVKKLEGGELSL---------DDSLKAFE-----EGVKHAAFCSKKLDEAER 53 (75)
T ss_pred HHHHHHHHHHHHHHHCCCCCH---------HHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 46777788888888 44665 56666664 788899999988876553
No 350
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.33 E-value=1.6e+02 Score=24.72 Aligned_cols=45 Identities=20% Similarity=0.221 Sum_probs=33.4
Q ss_pred HhhhHHHHHHHHHh--hhcccccccccchhhhhHHHHHhhhhHhHHHHHHHHHHHhccccc
Q 003195 776 ISASECLLEICKLF--RQISSVYSSNIGIKGELVHQCEMEKNMEAKSLLKKCIDILENLEV 834 (840)
Q Consensus 776 ~~a~~~l~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (840)
+.|+.-|=+|+..| |+.|+ ++.+.+|| ++-.++|.|-+.|+.-+.
T Consensus 8 Eeal~~LE~Iv~~LE~~~l~L---------eesl~lye-----eG~~L~k~C~~~L~~aE~ 54 (76)
T PRK14063 8 EEAISQLEHLVSKLEQGDVPL---------EEAISYFK-----EGMELSKLCDEKLKNVQE 54 (76)
T ss_pred HHHHHHHHHHHHHHHCCCCCH---------HHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 45677788888888 44665 56666664 688899999998877653
No 351
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=21.97 E-value=1.5e+03 Score=27.76 Aligned_cols=239 Identities=12% Similarity=0.094 Sum_probs=118.1
Q ss_pred hhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCC---CCchhHHHHHHHHHHHHHhc
Q 003195 515 LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPG---RLWEGKDALLYAIGSISTSC 591 (840)
Q Consensus 515 ~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~---r~~~~Ke~vl~aL~~l~~~~ 591 (840)
.+++.++..|.+- -|+.|..+|..|-..+-.++.|- ..+-+...+.+.+ ..-.-|.-++-++-..+.
T Consensus 230 k~lEtLls~c~KK-------sk~~a~~~l~~LkdlfI~~LLPd-RKLk~f~qrp~~~l~~~~~~~k~Ll~WyfE~~LK-- 299 (988)
T KOG2038|consen 230 KSLETLLSSCKKK-------SKRDALQALPALKDLFINGLLPD-RKLKYFSQRPLLELTNKRLRDKILLMWYFEHELK-- 299 (988)
T ss_pred HHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHhccCcc-hhhHHHhhChhhhccccccccceehHHHHHHHHH--
Confidence 4555555555432 36777777777766543344443 3344444443332 111112222223222221
Q ss_pred ccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCcchHHhHHHHHHhhcccccccCCCCCCCCCCcc
Q 003195 592 HKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTALNKSGQVPLPSDAS 671 (840)
Q Consensus 592 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~~l~~~~~~~~~~~~~~~~~~~ 671 (840)
.+..+.+.+|....++.-..++..|+..+-.++..-|+. =..++..++..+++...- +.
T Consensus 300 ---------~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEq-E~~LL~~lVNKlGDpqnK---------ia-- 358 (988)
T KOG2038|consen 300 ---------ILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQ-ENNLLVLLVNKLGDPQNK---------IA-- 358 (988)
T ss_pred ---------HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHH-HHHHHHHHHHhcCCcchh---------hh--
Confidence 124555666666666666788888998888888876653 334455666777666211 11
Q ss_pred chhhhccccCCchhHHHhhhhhhHHhhchhhHHHhhhhhHHHHH-hhcCCCCChHHHHHHHHhhhcCCCCCCCccchhHH
Q 003195 672 KEESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFT-ISLSPGFPWTELCSRLQKTLDDSAGTSPHAGISSL 750 (840)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 750 (840)
+.-..++.-+-..||.=-.--.+.+--.+. ..++....+|.+|..=|-.+++.... +..-
T Consensus 359 --------------skAsylL~~L~~~HPnMK~Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~d-----vAnr 419 (988)
T KOG2038|consen 359 --------------SKASYLLEGLLAKHPNMKIVVIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESD-----VANR 419 (988)
T ss_pred --------------hhHHHHHHHHHhhCCcceeehHHHHHHHHcccCccccceeehhhhhhhhHhccchHH-----HHHH
Confidence 112222222224566311100111111111 12223556667777666666554333 6666
Q ss_pred HHHHHhhhhhhhhhhc--ccc----------------hhhhhhHhh-----hHHHHHHHHHh-hhcccccccccchh
Q 003195 751 IQELFHTVSPKVVECI--STV----------------KIAQVHISA-----SECLLEICKLF-RQISSVYSSNIGIK 803 (840)
Q Consensus 751 ~~~~~~~~~~~~~~~~--~~~----------------k~~~vr~~a-----~~~l~~i~~~~-~~~~~~~~~~~~~~ 803 (840)
..++|=++..+++... ++. |+++|+-.+ .-.++-|+-|. +++||++-=..++.
T Consensus 420 Li~iYF~lFk~l~~~~~~d~~k~~k~~~k~kks~k~~k~e~~~~e~~~e~nsrllSAlLTGvNRAfPfaq~~ddk~~ 496 (988)
T KOG2038|consen 420 LISIYFSLFKTLVGKKDKDNRKDDKGAAKKKKSNKKDKKEEVSTESPIELNSRLLSALLTGVNRAFPFAQTADDKLE 496 (988)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcccchhhcccccccchhhhhcccchhhhhHHHHHHHHhcccccCCcccCchHHHH
Confidence 7777777776663322 222 222222211 12556666666 88999886544443
No 352
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=21.83 E-value=2.1e+02 Score=30.10 Aligned_cols=65 Identities=12% Similarity=0.225 Sum_probs=30.0
Q ss_pred hhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Q 003195 90 NSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLI 164 (840)
Q Consensus 90 ~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~ 164 (840)
..|-+|.-|+..+...- ..-+..+.+.++.++.+.-..++.. +|..|+. ...+-|..++++.+-.
T Consensus 128 yvR~aa~~aL~~l~~~~-~~~Re~vi~~f~~ll~~~l~~~~~~------~~~~Lv~---~~~dL~~~EL~~~I~~ 192 (249)
T PF06685_consen 128 YVRMAAISALAFLVHEG-PISREEVIQYFRELLNYFLERNPSF------LWGSLVA---DICDLYPEELLPEIRK 192 (249)
T ss_pred HHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHhccCchH------HHHHHHH---HHHhcCHHHhHHHHHH
Confidence 34444445555554322 1222334445555555544555444 5666664 2344444444444433
No 353
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=21.36 E-value=4.9e+02 Score=31.34 Aligned_cols=150 Identities=13% Similarity=0.109 Sum_probs=81.5
Q ss_pred ccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCH---HHHHHHHHHHHHhhc----C--------ChhhhHHHHH
Q 003195 395 PYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATP---SQAQKLIEETAALHI----D--------DKNSQISCAI 459 (840)
Q Consensus 395 p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~---~~~~~li~~l~~~~~----~--------d~~~r~~~~~ 459 (840)
.|.+.+++-+.+.+ ++.+..+|=.++..++.+....+- +++-+++++..+..+ + ++- -.--+.
T Consensus 242 ~~l~~iV~f~~~s~-Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel-~w~~~i 319 (993)
T COG5234 242 IYLEVIVDFLLSSV-SSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNEL-VWHGAI 319 (993)
T ss_pred HHHHHHHHHHHcCc-ccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchH-HHHHHH
Confidence 35566666666666 566778888888888777776653 444445555443321 1 121 111222
Q ss_pred HHHHHHhhchhhhhhhHhhHhHHHHHhhcCCch--------HHHHH-HHHHHHHhcCCChhhHHhhHHH-HHHHHHh-hh
Q 003195 460 LLKSYSSVASDVLSGYHAVIVPVIFISRFEDDK--------YVSDL-FEELWEENTSGDRVTLQLYLGE-IVSLICE-GI 528 (840)
Q Consensus 460 ~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~--------~vr~~-~~~i~~~~~~~~~~~i~~yl~~-Il~~l~~-~L 528 (840)
++-++++..+-.+...+ +.|.+..+.+-+.. .+|+. +-=+|.-..+ -+.++.+-+.. +.-++.. .+
T Consensus 320 ~~~ala~~~~id~~d~~--i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~-~S~s~~~~lqt~L~hll~~~al 396 (993)
T COG5234 320 LFFALAGAGLIDYSDCL--ILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRC-YSKSAIEGLQTNLIHLLLQTAL 396 (993)
T ss_pred HHHHHhhccccchhhhh--hhhheccccceeehheeeeccceeecccceeeeeeeec-cccccchhHHHHHHHHHHhhhh
Confidence 33335554444344433 56777666654322 35543 2245743322 12223222333 3344444 78
Q ss_pred cCCCHHHHHHHHHHHHHHHHH
Q 003195 529 ASSSWSSKRKSAKAICKLGEI 549 (840)
Q Consensus 529 ~d~s~~vR~~Aa~~L~~La~~ 549 (840)
=|++-.+|++|+++|-.+...
T Consensus 397 FDpel~vRr~a~Aal~E~iGR 417 (993)
T COG5234 397 FDPELNVRRAATAALFEVIGR 417 (993)
T ss_pred cCchhhhhhHHHHHHHHHhcc
Confidence 899999999999988776643
No 354
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.22 E-value=1.1e+03 Score=25.92 Aligned_cols=147 Identities=9% Similarity=0.045 Sum_probs=72.9
Q ss_pred HHHHHHhHhhc-CcHHHHHHHHHHHHHhhhcCCHHHHHHH------HHH---HHHhhcCChhhhHHHHHHHHHHHhhchh
Q 003195 401 LRLLFPVVKEE-KSAAAKRAFASACASVLKYATPSQAQKL------IEE---TAALHIDDKNSQISCAILLKSYSSVASD 470 (840)
Q Consensus 401 L~~Ll~~l~~d-~~~~Vr~~a~~Alg~l~~~~~~~~~~~l------i~~---l~~~~~~d~~~r~~~~~~i~ai~~~~~~ 470 (840)
+..++..+ +| ....+|..+-.++..+-..++.+.+... .+. ++..+.+|+.+-..+..++.-++-..||
T Consensus 285 l~tl~~~i-~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pd 363 (461)
T KOG4199|consen 285 LDTLLRCI-DDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPD 363 (461)
T ss_pred HHHHHHHH-hhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcc
Confidence 44566666 45 3456776666667666666665544322 122 3333446777777777777777666666
Q ss_pred hhhhhHhh-HhHHHHHhhcC-C-chHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 003195 471 VLSGYHAV-IVPVIFISRFE-D-DKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLG 547 (840)
Q Consensus 471 ~f~~~~~~-llP~l~~~~~d-~-d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La 547 (840)
.-...++. .--+...+|.. + ...|..........++......-.+.+.-=++.++..-...+.+.+..|-.+|.+|.
T Consensus 364 hsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 364 HSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred hHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 43222221 11122334332 2 222333222222333322211112233322333444445677788888888888775
Q ss_pred H
Q 003195 548 E 548 (840)
Q Consensus 548 ~ 548 (840)
-
T Consensus 444 c 444 (461)
T KOG4199|consen 444 C 444 (461)
T ss_pred c
Confidence 3
No 355
>PF07217 Het-C: Heterokaryon incompatibility protein Het-C; InterPro: IPR010816 In filamentous fungi, het loci (for heterokaryon incompatibility) are believed to regulate self/nonself-recognition during vegetative growth. As filamentous fungi grow, hyphal fusion occurs within an individual colony to form a network. Hyphal fusion can occur also between different individuals to form a heterokaryon, in which genetically distinct nuclei occupy a common cytoplasm. However, heterokaryotic cells are viable only if the individuals involved have identical alleles at all het loci [].
Probab=21.18 E-value=1.2e+03 Score=27.70 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHHHHHhccccHHH
Q 003195 192 QVGKHLRRIWTAAFRAMDDIKETV 215 (840)
Q Consensus 192 ~l~~~L~~l~~~l~~~ldD~~~~V 215 (840)
.+.||+..|+..+-..|...+..|
T Consensus 420 ~laPfi~Pii~q~~~~L~~gSs~V 443 (606)
T PF07217_consen 420 LLAPFIRPIIKQVSSELKTGSSEV 443 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHH
Confidence 467777777777776666554444
No 356
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=20.43 E-value=6.8e+02 Score=28.03 Aligned_cols=29 Identities=7% Similarity=0.013 Sum_probs=22.5
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHHHH
Q 003195 521 VSLICEGIASSSWSSKRKSAKAICKLGEI 549 (840)
Q Consensus 521 l~~l~~~L~d~s~~vR~~Aa~~L~~La~~ 549 (840)
++.=..++.|.+..+|++|.+.|..+|..
T Consensus 63 ~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 63 IDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred HHhhhccccccchhhHHHHHhccchhccC
Confidence 33344567788999999999999988864
Done!