Query 003195
Match_columns 840
No_of_seqs 403 out of 1297
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 16:44:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 100.0 1.3E-32 4.6E-37 339.7 60.0 563 59-654 110-765 (852)
2 2bpt_A Importin beta-1 subunit 100.0 4.3E-30 1.5E-34 317.0 60.9 694 9-787 89-857 (861)
3 1u6g_C TIP120 protein, CAND1; 100.0 5.7E-31 2E-35 337.5 54.2 601 117-790 7-682 (1230)
4 1qgr_A Protein (importin beta 100.0 9.9E-29 3.4E-33 305.4 62.5 665 59-832 109-872 (876)
5 1u6g_C TIP120 protein, CAND1; 100.0 1.5E-30 5E-35 333.7 45.7 510 74-636 48-639 (1230)
6 2bpt_A Importin beta-1 subunit 100.0 3E-29 1E-33 309.5 54.6 553 57-653 199-835 (861)
7 4fdd_A Transportin-1; heat rep 100.0 1.1E-27 3.8E-32 295.7 54.3 529 74-652 215-801 (852)
8 1qgr_A Protein (importin beta 100.0 3.4E-27 1.1E-31 291.7 52.4 549 58-650 149-848 (876)
9 1b3u_A Protein (protein phosph 100.0 1.4E-27 4.7E-32 281.4 43.9 509 76-652 12-527 (588)
10 1b3u_A Protein (protein phosph 100.0 9.8E-28 3.4E-32 282.7 42.4 531 59-655 30-569 (588)
11 1ibr_B P95, importin beta-1 su 99.9 5.6E-20 1.9E-24 209.5 39.1 395 160-638 4-441 (462)
12 1ibr_B P95, importin beta-1 su 99.8 8.9E-18 3E-22 191.3 36.9 401 120-570 5-461 (462)
13 2x1g_F Cadmus; transport prote 99.8 3E-15 1E-19 187.2 52.0 551 62-639 108-765 (971)
14 2x19_B Importin-13; nuclear tr 99.8 4.4E-14 1.5E-18 176.5 59.6 546 62-638 126-756 (963)
15 2x1g_F Cadmus; transport prote 99.7 9.1E-14 3.1E-18 173.7 43.3 498 89-636 258-860 (971)
16 2x19_B Importin-13; nuclear tr 99.7 1.4E-12 4.7E-17 162.9 52.8 526 57-637 220-849 (963)
17 2jdq_A Importin alpha-1 subuni 99.7 6.3E-14 2.2E-18 159.0 36.4 400 159-634 22-443 (450)
18 1wa5_C Importin alpha RE-expor 99.7 6.1E-13 2.1E-17 166.0 47.6 535 62-637 108-794 (960)
19 2jdq_A Importin alpha-1 subuni 99.6 3.3E-14 1.1E-18 161.3 29.1 393 118-588 22-442 (450)
20 2vgl_B AP-2 complex subunit be 99.6 8.6E-14 3E-18 164.2 32.9 406 115-638 48-461 (591)
21 1wa5_B Importin alpha subunit; 99.6 2.5E-13 8.7E-18 158.0 32.0 406 114-635 85-511 (530)
22 2vgl_B AP-2 complex subunit be 99.6 2.3E-12 7.8E-17 152.0 39.5 469 74-632 49-530 (591)
23 1wa5_C Importin alpha RE-expor 99.6 8.2E-11 2.8E-15 146.7 54.8 496 113-637 120-713 (960)
24 1wa5_B Importin alpha subunit; 99.6 2.3E-13 7.8E-18 158.4 27.6 394 74-548 87-510 (530)
25 4b8j_A Importin subunit alpha- 99.6 1.7E-12 6E-17 150.8 33.9 403 157-635 74-497 (528)
26 4b8j_A Importin subunit alpha- 99.6 2.5E-12 8.6E-17 149.5 34.0 390 116-548 74-496 (528)
27 3m1i_C Exportin-1; heat repeat 99.6 7.2E-11 2.4E-15 148.6 49.2 564 63-652 124-802 (1049)
28 2qk2_A LP04448P; mini spindles 99.5 9.2E-14 3.2E-18 144.6 17.9 200 79-295 20-221 (242)
29 3m1i_C Exportin-1; heat repeat 99.5 6.6E-11 2.3E-15 148.9 43.7 435 110-636 338-880 (1049)
30 2z6h_A Catenin beta-1, beta-ca 99.5 4.5E-11 1.5E-15 142.5 39.2 471 59-572 34-549 (644)
31 2qk1_A Protein STU2; STU2P, XM 99.5 8.2E-14 2.8E-18 145.5 13.5 206 79-293 21-234 (249)
32 2z6g_A B-catenin; FULL-length, 99.5 2.9E-11 1E-15 146.9 36.5 486 117-637 116-666 (780)
33 1w63_A Adapter-related protein 99.5 2.3E-10 8E-15 135.4 43.2 466 116-633 70-576 (618)
34 3now_A UNC-45 protein, SD10334 99.5 1.7E-10 5.7E-15 137.9 41.4 522 89-635 218-783 (810)
35 1jdh_A Beta-catenin; beta-cate 99.5 2.8E-11 9.5E-16 140.2 33.5 460 116-632 17-528 (529)
36 2z6h_A Catenin beta-1, beta-ca 99.5 3E-11 1E-15 144.0 34.1 469 116-636 14-529 (644)
37 3ibv_A Exportin-T; karyopherin 99.5 3.5E-09 1.2E-13 131.1 52.5 547 63-639 114-773 (980)
38 1jdh_A Beta-catenin; beta-cate 99.5 1.4E-10 4.7E-15 134.3 37.9 432 72-546 57-528 (529)
39 2z6g_A B-catenin; FULL-length, 99.5 1.1E-10 3.8E-15 141.8 37.6 441 72-553 190-668 (780)
40 4hat_C Exportin-1; heat repeat 99.4 3.4E-11 1.2E-15 149.2 32.4 360 57-433 427-837 (1023)
41 1w63_A Adapter-related protein 99.4 2.2E-10 7.4E-15 135.7 37.4 400 158-638 71-494 (618)
42 4hat_C Exportin-1; heat repeat 99.4 7.7E-10 2.6E-14 137.2 41.7 421 109-592 384-881 (1023)
43 3now_A UNC-45 protein, SD10334 99.4 1.4E-09 4.8E-14 129.9 40.9 469 75-589 247-782 (810)
44 2vgl_A Adaptor protein complex 99.4 2.6E-09 9E-14 126.1 42.8 467 116-634 74-588 (621)
45 3ibv_A Exportin-T; karyopherin 99.3 4.6E-10 1.6E-14 139.0 33.1 445 108-578 374-905 (980)
46 2qk2_A LP04448P; mini spindles 99.3 7.2E-11 2.4E-15 122.6 21.2 196 355-594 13-210 (242)
47 2qk1_A Protein STU2; STU2P, XM 99.3 3.8E-11 1.3E-15 125.2 17.7 204 162-443 21-234 (249)
48 3ul1_B Importin subunit alpha- 99.3 3.9E-09 1.3E-13 122.0 36.0 398 159-633 59-477 (510)
49 3tpo_A Importin subunit alpha- 99.3 1.1E-08 3.7E-13 118.9 36.5 398 159-633 78-496 (529)
50 2iw3_A Elongation factor 3A; a 99.2 2.1E-10 7.1E-15 138.9 21.2 297 116-467 18-325 (986)
51 3ul1_B Importin subunit alpha- 99.2 4.8E-09 1.6E-13 121.2 30.4 356 75-507 101-478 (510)
52 3tpo_A Importin subunit alpha- 99.2 7.9E-09 2.7E-13 120.0 30.6 355 75-506 120-496 (529)
53 2vgl_A Adaptor protein complex 99.2 4E-08 1.4E-12 116.0 35.2 404 159-638 76-513 (621)
54 1oyz_A Hypothetical protein YI 99.1 5.4E-09 1.8E-13 110.7 21.1 253 76-425 25-278 (280)
55 1oyz_A Hypothetical protein YI 99.1 2.5E-08 8.4E-13 105.5 25.9 246 158-495 24-270 (280)
56 3gjx_A Exportin-1; transport, 99.0 4.9E-07 1.7E-11 111.8 39.2 417 132-590 455-957 (1073)
57 2iw3_A Elongation factor 3A; a 99.0 2.6E-09 9E-14 129.3 15.3 211 93-308 70-311 (986)
58 3gjx_A Exportin-1; transport, 99.0 5E-07 1.7E-11 111.7 33.9 419 55-490 451-935 (1073)
59 4hxt_A De novo protein OR329; 98.9 8.1E-08 2.8E-12 99.1 21.5 234 401-638 4-245 (252)
60 3l6x_A Catenin delta-1; cateni 98.9 3.3E-06 1.1E-10 97.7 36.7 401 91-548 24-476 (584)
61 4db8_A Armadillo-repeat protei 98.9 9E-08 3.1E-12 99.2 20.9 221 76-308 14-238 (252)
62 3ltj_A Alpharep-4; protein eng 98.9 1.2E-07 4E-12 94.9 20.3 192 390-633 5-197 (201)
63 3ltm_A Alpha-REP4; protein eng 98.8 9.5E-08 3.3E-12 96.4 17.2 122 115-278 18-139 (211)
64 4hxt_A De novo protein OR329; 98.8 2.5E-07 8.6E-12 95.3 20.2 233 359-593 4-245 (252)
65 3ltj_A Alpharep-4; protein eng 98.8 2.2E-07 7.7E-12 92.8 18.8 125 113-279 11-135 (201)
66 3ltm_A Alpha-REP4; protein eng 98.8 2.7E-07 9.1E-12 93.0 18.8 188 398-637 18-206 (211)
67 4db6_A Armadillo repeat protei 98.8 1.7E-07 5.7E-12 94.3 17.2 193 75-280 13-209 (210)
68 4db8_A Armadillo-repeat protei 98.8 3.2E-07 1.1E-11 95.0 19.4 228 359-588 14-250 (252)
69 1xm9_A Plakophilin 1; armadill 98.7 3.9E-06 1.3E-10 95.4 29.9 388 118-547 4-448 (457)
70 4ffb_C Protein STU2; tubulin f 98.7 5.9E-07 2E-11 95.0 18.2 197 162-434 14-217 (278)
71 3a6p_A Exportin-5; exportin-5, 98.6 2.1E-05 7.1E-10 99.8 34.5 446 71-530 131-682 (1204)
72 4ady_A RPN2, 26S proteasome re 98.6 1.3E-05 4.4E-10 96.2 30.3 330 92-548 375-719 (963)
73 3a6p_A Exportin-5; exportin-5, 98.6 2.7E-05 9.3E-10 98.8 35.4 452 128-614 108-680 (1204)
74 4db6_A Armadillo repeat protei 98.5 3.3E-06 1.1E-10 84.6 18.4 179 117-308 13-196 (210)
75 2db0_A 253AA long hypothetical 98.5 2.5E-05 8.6E-10 74.2 22.2 213 358-589 33-246 (253)
76 1xm9_A Plakophilin 1; armadill 98.5 0.00015 5E-09 82.3 33.0 404 159-633 4-448 (457)
77 3opb_A SWI5-dependent HO expre 98.4 0.0017 5.9E-08 76.5 40.9 229 400-638 458-732 (778)
78 1xqr_A HSPBP1 protein; armadil 98.4 3.2E-05 1.1E-09 82.1 22.5 180 90-281 55-239 (296)
79 3l6x_A Catenin delta-1; cateni 98.3 0.00079 2.7E-08 77.8 32.5 353 251-634 49-476 (584)
80 4ffb_C Protein STU2; tubulin f 98.3 1.2E-05 4.2E-10 84.7 16.1 184 88-285 22-217 (278)
81 2of3_A ZYG-9; multifunctional 98.3 7E-05 2.4E-09 77.5 20.9 189 161-434 50-241 (266)
82 4ady_A RPN2, 26S proteasome re 98.3 5.9E-05 2E-09 90.5 23.0 294 89-463 409-716 (963)
83 3nmz_A APC variant protein; pr 98.2 0.00033 1.1E-08 78.9 27.6 152 401-552 288-454 (458)
84 3opb_A SWI5-dependent HO expre 98.2 0.011 3.7E-07 69.8 40.8 418 126-589 266-728 (778)
85 3nmz_A APC variant protein; pr 98.2 0.00028 9.5E-09 79.5 26.2 216 374-591 216-452 (458)
86 2db0_A 253AA long hypothetical 98.2 0.0007 2.4E-08 64.4 23.3 217 395-634 28-246 (253)
87 2of3_A ZYG-9; multifunctional 98.1 0.00012 4.1E-09 75.7 19.3 181 449-644 58-245 (266)
88 3oc3_A Helicase MOT1, MOT1; re 98.1 3.5E-05 1.2E-09 85.2 15.0 143 69-224 168-324 (800)
89 3nmw_A APC variant protein; AR 98.0 0.00029 1E-08 76.7 21.0 229 128-433 96-338 (354)
90 3oc3_A Helicase MOT1, MOT1; re 97.9 0.00025 8.5E-09 78.6 18.0 241 158-462 175-432 (800)
91 1xqr_A HSPBP1 protein; armadil 97.9 0.001 3.6E-08 70.4 22.5 177 416-592 56-241 (296)
92 1te4_A Conserved protein MTH18 97.9 3.7E-06 1.3E-10 77.9 3.0 118 73-223 11-128 (131)
93 3nmw_A APC variant protein; AR 97.8 0.00071 2.4E-08 73.7 18.2 218 374-593 100-338 (354)
94 4gmo_A Putative uncharacterize 97.7 0.0009 3.1E-08 79.7 19.5 69 157-227 35-104 (684)
95 1vsy_5 Proteasome activator BL 97.7 0.0019 6.5E-08 79.4 22.5 367 246-655 504-946 (997)
96 1te4_A Conserved protein MTH18 97.6 1E-05 3.5E-10 74.9 0.9 120 115-277 11-130 (131)
97 1vsy_5 Proteasome activator BL 97.5 0.018 6.2E-07 70.8 27.4 127 352-480 796-940 (997)
98 3grl_A General vesicular trans 97.5 0.06 2.1E-06 61.9 28.9 506 74-619 21-577 (651)
99 3l9t_A Putative uncharacterize 97.3 0.0007 2.4E-08 67.9 9.8 166 98-300 52-219 (240)
100 3tjz_B Coatomer subunit gamma; 97.3 0.0041 1.4E-07 67.2 15.9 312 117-497 27-343 (355)
101 3tjz_B Coatomer subunit gamma; 97.2 0.0072 2.4E-07 65.3 17.1 241 116-423 104-347 (355)
102 3tt9_A Plakophilin-2; cell adh 97.1 0.0053 1.8E-07 62.4 13.7 174 117-302 9-204 (233)
103 3b2a_A TON_1937, putative unch 97.1 0.022 7.5E-07 56.7 16.9 201 73-301 32-233 (265)
104 1vsy_4 Proteasome activator BL 96.7 1.6 5.5E-05 52.2 32.7 362 154-549 229-688 (799)
105 3b2a_A TON_1937, putative unch 96.3 0.21 7.3E-06 49.7 17.8 147 476-635 73-219 (265)
106 3l9t_A Putative uncharacterize 96.1 0.13 4.5E-06 51.5 15.4 139 355-508 69-208 (240)
107 1lrv_A LRV, leucine-rich repea 96.0 0.0034 1.2E-07 64.3 3.3 39 125-180 59-97 (244)
108 3grl_A General vesicular trans 94.3 1 3.6E-05 51.7 17.5 197 436-635 19-242 (651)
109 4gmo_A Putative uncharacterize 93.7 0.51 1.8E-05 55.8 14.2 73 116-189 35-108 (684)
110 3u0r_A Apoptosis inhibitor 5; 93.6 8.4 0.00029 42.5 22.1 226 516-790 62-301 (507)
111 4atg_A TAF6; transcription, TF 92.8 3.8 0.00013 39.9 16.1 88 500-587 68-160 (196)
112 3tt9_A Plakophilin-2; cell adh 92.7 3.4 0.00012 41.5 16.5 111 76-187 10-125 (233)
113 3gs3_A Symplekin, LD45768P; he 91.5 6.4 0.00022 40.1 16.9 110 113-227 50-172 (257)
114 3gs3_A Symplekin, LD45768P; he 90.7 12 0.00039 38.2 18.0 118 516-637 50-176 (257)
115 4atg_A TAF6; transcription, TF 90.6 13 0.00045 36.0 19.5 131 149-303 7-142 (196)
116 3o2t_A Symplekin; heat repeat, 90.5 8.6 0.00029 41.5 17.6 108 113-227 60-182 (386)
117 1lrv_A LRV, leucine-rich repea 88.0 0.28 9.4E-06 50.0 3.4 40 163-221 200-239 (244)
118 3u0r_A Apoptosis inhibitor 5; 87.7 38 0.0013 37.4 31.3 117 372-504 42-160 (507)
119 1vsy_4 Proteasome activator BL 85.0 71 0.0024 38.0 33.6 201 392-592 218-458 (799)
120 3o2t_A Symplekin; heat repeat, 84.9 19 0.00064 38.9 15.8 114 516-637 60-186 (386)
121 1w9c_A CRM1 protein, exportin 82.9 9.3 0.00032 40.1 12.1 124 514-637 68-199 (321)
122 1x5b_A Signal transducing adap 78.9 43 0.0015 31.3 15.1 129 520-659 20-150 (163)
123 3ldz_A STAM-1, signal transduc 78.5 25 0.00087 32.0 12.2 122 522-655 12-135 (140)
124 1w9c_A CRM1 protein, exportin 77.1 24 0.00083 36.9 12.9 145 131-283 44-199 (321)
125 1upk_A MO25 protein; transfera 76.2 81 0.0028 33.1 26.9 219 396-636 75-313 (341)
126 3fga_B Serine/threonine-protei 70.8 1.2E+02 0.0041 32.7 19.4 254 514-820 123-389 (403)
127 1lsh_A Lipovitellin (LV-1N, LV 68.0 34 0.0012 42.4 13.5 180 71-284 388-580 (1056)
128 1sz9_A PCF11 protein; RNA poly 67.3 37 0.0013 31.1 10.3 96 515-614 39-135 (144)
129 2npp_B PP2A, B subunit, serine 64.9 1.7E+02 0.0057 32.1 18.3 251 514-817 156-419 (449)
130 3zyq_A Hepatocyte growth facto 62.6 44 0.0015 33.1 10.7 124 525-659 18-143 (226)
131 1dvp_A HRS, hepatocyte growth 59.7 52 0.0018 32.4 10.7 121 525-656 15-137 (220)
132 1upk_A MO25 protein; transfera 54.4 2.1E+02 0.0072 30.0 17.0 133 95-227 139-282 (341)
133 3ldz_A STAM-1, signal transduc 53.9 57 0.0019 29.6 9.0 77 517-593 40-118 (140)
134 2fv2_A RCD1 required for cell 53.5 96 0.0033 31.3 11.1 117 60-186 50-174 (268)
135 3s4w_B Protein FACD2, fanconi 53.4 2.9E+02 0.0098 34.7 17.6 163 386-550 387-551 (1323)
136 1x5b_A Signal transducing adap 52.2 62 0.0021 30.2 9.2 75 518-592 51-128 (163)
137 1lsh_A Lipovitellin (LV-1N, LV 50.8 21 0.00073 44.2 7.3 105 531-650 407-522 (1056)
138 1vdy_A Hypothetical protein (R 50.7 68 0.0023 29.2 8.8 73 153-226 45-128 (140)
139 3g2s_A C-terminal fragment of 50.1 74 0.0025 29.2 9.2 75 518-592 47-129 (149)
140 3s4w_B Protein FACD2, fanconi 49.7 4.8E+02 0.016 32.7 27.1 226 400-636 312-551 (1323)
141 1mhq_A ADP-ribosylation factor 49.7 81 0.0028 28.9 9.4 75 518-592 37-119 (148)
142 1elk_A Target of MYB1; superhe 45.2 47 0.0016 30.8 7.1 116 527-653 28-149 (157)
143 2b6c_A Hypothetical protein EF 44.9 67 0.0023 31.5 8.7 75 116-197 124-198 (220)
144 1juq_A ADP-ribosylation factor 42.5 88 0.003 29.4 8.6 75 518-592 49-131 (171)
145 3jxy_A Alkylpurine DNA glycosy 39.9 93 0.0032 30.7 8.9 75 117-198 132-206 (232)
146 1mhq_A ADP-ribosylation factor 36.0 2.5E+02 0.0086 25.5 13.0 121 525-658 11-137 (148)
147 1vdy_A Hypothetical protein (R 34.7 66 0.0023 29.2 6.0 64 525-591 17-80 (140)
148 1t06_A Hypothetical protein; s 34.2 82 0.0028 31.3 7.4 69 115-185 107-179 (235)
149 3zyq_A Hepatocyte growth facto 32.9 1.6E+02 0.0054 29.0 9.2 75 518-592 44-121 (226)
150 2jtt_C Calcyclin-binding prote 32.8 12 0.0004 25.4 0.5 19 4-22 15-33 (35)
151 1elk_A Target of MYB1; superhe 32.4 2.5E+02 0.0087 25.7 10.0 75 518-592 52-133 (157)
152 2b6c_A Hypothetical protein EF 29.4 2.9E+02 0.0098 26.8 10.4 76 473-554 119-194 (220)
153 3d9j_A RNA-binding protein 16; 27.4 1.8E+02 0.0062 26.3 7.9 92 515-615 38-136 (145)
154 3rru_A TOM1L1 protein; structu 26.2 75 0.0026 29.3 5.0 102 527-639 28-135 (152)
155 1juq_A ADP-ribosylation factor 25.4 4.1E+02 0.014 24.7 13.5 118 525-657 23-148 (171)
156 3g2s_A C-terminal fragment of 24.7 4E+02 0.014 24.2 12.3 107 525-639 21-131 (149)
157 1dvp_A HRS, hepatocyte growth 23.9 3.8E+02 0.013 25.9 10.1 73 517-592 40-118 (220)
158 3ebb_A Phospholipase A2-activa 22.7 6.3E+02 0.021 25.8 15.4 139 131-280 117-263 (304)
159 1h2v_C 80 kDa nuclear CAP bind 21.0 1.9E+02 0.0066 34.1 8.4 90 558-652 46-137 (771)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.3e-32 Score=339.66 Aligned_cols=563 Identities=14% Similarity=0.163 Sum_probs=439.4
Q ss_pred hHHHHHHHhhh---cCCchHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhc-----hhhhhHHHHHHhhcCCCCH
Q 003195 59 TYKELCNLANE---MGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALK-----PHLRLLIPKLVRFQYDPDK 130 (840)
Q Consensus 59 tyk~l~~lA~~---~g~p~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~-----~~l~~lvP~L~~~~~Dp~~ 130 (840)
+...+..+|.. -.||+++..+..+.++. ++..|++++.+|+.|++..++.++ .++..++|.|+.++.|+++
T Consensus 110 ~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~-~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~ 188 (852)
T 4fdd_A 110 VGILITTIASKGELQNWPDLLPKLCSLLDSE-DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSP 188 (852)
T ss_dssp HHHHHHHHHHHTTTTTCTTHHHHHHHHHSCS-SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCH
Confidence 33445555544 37899999999988765 589999999999999998866543 3478899999999999999
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhcc
Q 003195 131 NVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDD 210 (840)
Q Consensus 131 ~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD 210 (840)
.||.++..+...++...+.....+++.+++.++..+.|+++++|..+|.+|+.+++..+ +.+.+|++.+++.++..+.|
T Consensus 189 ~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~-~~~~~~l~~l~~~l~~~~~~ 267 (852)
T 4fdd_A 189 KIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRM-DRLLPHMHNIVEYMLQRTQD 267 (852)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCH-HHHGGGHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHccC
Confidence 99999999988887655555666788999999999999999999999999999988653 56889999999999999999
Q ss_pred ccHHHHHHHHHHHHHHH-----------------HHHHHhh------------hccc--------c--c-----------
Q 003195 211 IKETVRTAGDKLCRSVT-----------------SLTIRLC------------DVTL--------T--E----------- 240 (840)
Q Consensus 211 ~~~~VR~aA~~~~~~l~-----------------~~~ir~~------------~~~~--------~--~----------- 240 (840)
..+.||..|...+.+++ ..+++.. ++.. . .
T Consensus 268 ~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~ 347 (852)
T 4fdd_A 268 QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDV 347 (852)
T ss_dssp SSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHH
Confidence 99999998876655543 1122221 1000 0 0
Q ss_pred --cchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhh
Q 003195 241 --ISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAAN 318 (840)
Q Consensus 241 --~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~ 318 (840)
...+..+++.++|++.+ .+.++++.+|..++.+++.+++.+++.+.||++.++|.++..+.+..+.++.-.++..++
T Consensus 348 la~~~~~~~~~~l~~~l~~-~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~ 426 (852)
T 4fdd_A 348 LANVYRDELLPHILPLLKE-LLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSR 426 (852)
T ss_dssp HHHHHGGGGHHHHHHHHHH-HHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 00112355677887764 467788999999999999999999888999999999999999998777665433333332
Q ss_pred cccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHH
Q 003195 319 AGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTS 398 (840)
Q Consensus 319 ~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~ 398 (840)
+. +.+-+......+..++|.+.+.+++. ...+|..|+.++..++...+..+.||.+
T Consensus 427 l~-----------------------~~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~~~~l~~~l~ 482 (852)
T 4fdd_A 427 YA-----------------------HWVVSQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEACTELVPYLA 482 (852)
T ss_dssp TH-----------------------HHHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGGGGGGHH
T ss_pred HH-----------------------HHhccchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhhHhhHhHHH
Confidence 11 00111112345678899999998775 5678899999999999999999999999
Q ss_pred HHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCC-----HHHHHHHHHHHHHhhc----CChhhhHHHHHHHHHHHhhch
Q 003195 399 MLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT-----PSQAQKLIEETAALHI----DDKNSQISCAILLKSYSSVAS 469 (840)
Q Consensus 399 ~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~-----~~~~~~li~~l~~~~~----~d~~~r~~~~~~i~ai~~~~~ 469 (840)
.+++.++..+ ++.+......+..+++.++...+ ++.+..+++.+.+.+. ++++.| .+..+++.++...+
T Consensus 483 ~ll~~L~~~l-~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g 560 (852)
T 4fdd_A 483 YILDTLVFAF-SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQ 560 (852)
T ss_dssp HHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHG
T ss_pred HHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHh
Confidence 9999999999 55556666677888888876443 3456677777776542 234454 67889999999999
Q ss_pred hhhhhhHhhHhHHHHHhh----------------c-CCchHHHHHHHHHHHHhcCCChhhHHhhH--HHHHHHHHhhhcC
Q 003195 470 DVLSGYHAVIVPVIFISR----------------F-EDDKYVSDLFEELWEENTSGDRVTLQLYL--GEIVSLICEGIAS 530 (840)
Q Consensus 470 ~~f~~~~~~llP~l~~~~----------------~-d~d~~vr~~~~~i~~~~~~~~~~~i~~yl--~~Il~~l~~~L~d 530 (840)
..|.+|.+.++|.++... . .++.+++....+.+..++.+.+..+.+|+ +.+++.+..++.|
T Consensus 561 ~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~ 640 (852)
T 4fdd_A 561 SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQD 640 (852)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCC
Confidence 999999988887543221 1 12556776666777777666667788887 7899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHH
Q 003195 531 SSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMV 610 (840)
Q Consensus 531 ~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l 610 (840)
++.++|+.|+.++++++..+++.+.+|++.++|.+.+.+....++.|..++.+++.++...+..+. ||++.+++.+
T Consensus 641 ~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~----p~~~~il~~L 716 (852)
T 4fdd_A 641 KMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQ----PYIPMVLHQL 716 (852)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGG----GGTHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHH----HHHHHHHHHH
Confidence 999999999999999999999999999999999999999887889999999999999998876554 8899999999
Q ss_pred HHHHhhc--CHHHHHHHHHHHHHHHHHcCC---cchHHhHHHHHHhhcc
Q 003195 611 SSACRKK--IKKYREAAFSCLEQVIKAFRD---PKFFNIIFPLLFEMCG 654 (840)
Q Consensus 611 ~~~~~~~--~~~~R~~Al~~L~~l~~~~~~---~~l~~~v~~i~~~l~~ 654 (840)
.+.+++. ...+++.|..++|++....++ +++.+++.+.+..+.+
T Consensus 717 ~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~ 765 (852)
T 4fdd_A 717 VEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRN 765 (852)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHT
T ss_pred HHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhcc
Confidence 9988654 568999999999999998765 3567777777777754
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=4.3e-30 Score=317.03 Aligned_cols=694 Identities=12% Similarity=0.082 Sum_probs=485.7
Q ss_pred ChhhHHHHHHHHHHHhccCCccccccccccCcccccCCcccccCCCCccchHHHHHHHhhh----cCCchHHHHHHHHhc
Q 003195 9 DASMKQNLVDALVTTLTGSGKRKRTVKLAEDSEVFQEGAIGEGLGGGKLSTYKELCNLANE----MGQPDLIYKFMDLAN 84 (840)
Q Consensus 9 ~~~~~~~lv~~l~~~~~~~~~~~~~~~~~~~t~~f~~g~~~~~~~~~~~styk~l~~lA~~----~g~p~lv~~fm~la~ 84 (840)
+++.|+.+-..|++.+.......+ ......|..++.. -.||+++..++....
T Consensus 89 ~~~~~~~ik~~ll~~l~~~~~~vr------------------------~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~ 144 (861)
T 2bpt_A 89 SPEAKNQIKTNALTALVSIEPRIA------------------------NAAAQLIAAIADIELPHGAWPELMKIMVDNTG 144 (861)
T ss_dssp CHHHHHHHHHHHHHHHTCSSHHHH------------------------HHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHCCCchHHH------------------------HHHHHHHHHHHHhhCcccccHHHHHHHHHHHh
Confidence 566777777777777765432111 1222334444443 268999999999987
Q ss_pred cccchhhhhhHHhHHHHHHHHhhhh---hchhhhhHHHHHHhhcCCC--CHhHHHHHHHHHHHhccCChHHH--HHHHHH
Q 003195 85 YQVSLNSKRGAAFGFSKIAKQAGDA---LKPHLRLLIPKLVRFQYDP--DKNVQDAMAHIWKSLVADPKRTI--DEHLDL 157 (840)
Q Consensus 85 ~~~~w~sr~gA~~~l~~I~~~~~~~---l~~~l~~lvP~L~~~~~Dp--~~~VR~a~~~iw~~Lv~d~~~~i--~~~~~~ 157 (840)
+..++..|++++..++.|++..+.. +.++...++|.+.....|+ ++.||.++..++..++.-..... ....+.
T Consensus 145 ~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ 224 (861)
T 2bpt_A 145 AEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNY 224 (861)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHH
Confidence 6535889999999999999876544 6789999999999999998 89999999999888764222111 112345
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhc
Q 003195 158 IFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLR-RIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDV 236 (840)
Q Consensus 158 Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~-~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~ 236 (840)
+++.+...+.+++|++|+.+|.+|..+++..+ +.+.+|+. .+++.++..+.|..+.||..|...+..+++.....-..
T Consensus 225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 303 (861)
T 2bpt_A 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYY-TFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYE 303 (861)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHG-GGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 77777788889999999999999999987653 45788999 99999999999999999999988887776542110000
Q ss_pred cc-------cccchHHhHHHhHHHHHHhcccCC-------chhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcc
Q 003195 237 TL-------TEISDARQSMDIVLPFLLAEGILS-------KVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLS 302 (840)
Q Consensus 237 ~~-------~~~~~~~~~l~~lLP~Ll~~gL~s-------~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls 302 (840)
.. .........+..++|.++. .+.. +.+.+|..+..++..++...|. ..++.++|.+.+.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~il~~ll~-~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~ 379 (861)
T 2bpt_A 304 LAQFPQSPLQSYNFALSSIKDVVPNLLN-LLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN---HILEPVLEFVEQNIT 379 (861)
T ss_dssp HHHCTTCSCCCCCHHHHHHHHHHHHHHH-HTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTT
T ss_pred hhhccCCchhhHHHHHHHHHHHHHHHHH-HHHhcccccccccCcHHHHHHHHHHHHHHHccH---hHHHHHHHHHHHHcC
Confidence 00 0011233466788888875 2332 3468999999999999998885 456788888888887
Q ss_pred CchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcC----hhhHhhHHHHHHHHHhccCCCchHhHH
Q 003195 303 SLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVD----TESLDQLVPHLARLVRSGIGLNTRVGV 378 (840)
Q Consensus 303 ~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d----~~~l~~lvp~L~~~lk~~~~~~~r~~a 378 (840)
+..+..+. .+ ..+++.+....+ .+.++.++|.+...++++ ...+|..+
T Consensus 380 ~~~~~~r~---------------------~a------~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~-~~~vr~~a 431 (861)
T 2bpt_A 380 ADNWRNRE---------------------AA------VMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQ-SLQVKETT 431 (861)
T ss_dssp CSSHHHHH---------------------HH------HHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCS-CHHHHHHH
T ss_pred CCChhHHH---------------------HH------HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC-cHHHHHHH
Confidence 54332211 11 122333333322 123567888888888775 66788899
Q ss_pred HHHHHHHHHHhccCc--cccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCH---HH----HHHHHHHHHHhhc-
Q 003195 379 ASFISLLVQKIGMDI--KPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATP---SQ----AQKLIEETAALHI- 448 (840)
Q Consensus 379 ~~~l~~L~~~~~~~~--~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~---~~----~~~li~~l~~~~~- 448 (840)
+.+++.++..++..+ .+|.+.+++.++..+ .|. +.||.+++.+++.+++.+++ +. +..+++.+...+.
T Consensus 432 ~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l-~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~ 509 (861)
T 2bpt_A 432 AWCIGRIADSVAESIDPQQHLPGVVQACLIGL-QDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANR 509 (861)
T ss_dssp HHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH-TSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHh-ccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhC
Confidence 999999999888776 689999999999999 565 89999999999999987652 33 3444455555443
Q ss_pred CC--hhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcC---------------CchHHHHHHHHHHHHhcCCChh
Q 003195 449 DD--KNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFE---------------DDKYVSDLFEELWEENTSGDRV 511 (840)
Q Consensus 449 ~d--~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d---------------~d~~vr~~~~~i~~~~~~~~~~ 511 (840)
.| ++.|..+..+++.++...++.+.+|+..++|.++....+ ...++|....+.+..++.+.+.
T Consensus 510 ~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 589 (861)
T 2bpt_A 510 IDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS 589 (861)
T ss_dssp SCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred cCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 23 678999999999999999988889999999987654321 1334666666777777766666
Q ss_pred hHHhhHHHHHHHHHhhhcCCCH-HHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHh
Q 003195 512 TLQLYLGEIVSLICEGIASSSW-SSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTS 590 (840)
Q Consensus 512 ~i~~yl~~Il~~l~~~L~d~s~-~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~ 590 (840)
.+.+|++.+++.+...+++.++ .+|..+..+++.++...|+.+.+|++.++|.|.+.+.+++++.|..++.+++.++..
T Consensus 590 ~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 590 SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999888 999999999999999999999999999999999999888899999999999999998
Q ss_pred cccccccCCCCchHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHcCCcchH----HhHHHHHHhhcccccccCCCCC
Q 003195 591 CHKDISAEDPTTPFAIVDMVSSACRKKI--KKYREAAFSCLEQVIKAFRDPKFF----NIIFPLLFEMCGSTALNKSGQV 664 (840)
Q Consensus 591 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~--~~~R~~Al~~L~~l~~~~~~~~l~----~~v~~i~~~l~~~~~~~~~~~~ 664 (840)
++..+. ++.+.+++.+.+.+.+.+ ..+|..++.+++.++..+++ .+. .++++++..+.... +
T Consensus 670 ~~~~~~----~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~-~~~~~l~~~l~~l~~~~~~~~-----~-- 737 (861)
T 2bpt_A 670 LEEDFR----RYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA-DFIPYLNDIMALCVAAQNTKP-----E-- 737 (861)
T ss_dssp TGGGGH----HHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHHHHTCCC-----S--
T ss_pred hchhcc----chHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHhcCC-----C--
Confidence 876543 788999999998887654 78999999999999999876 333 33333444332110 0
Q ss_pred CCCCCccchhhhccccCCchhHHHhhhhhhHHhhch-hhHHHh-hhhhHHHHHhhcCCCC---ChH-H--HHHHHHhhhc
Q 003195 665 PLPSDASKEESADESVSAPLDKVLDCVSSCIHVAHV-NDIIEQ-EKNLVQLFTISLSPGF---PWT-E--LCSRLQKTLD 736 (840)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~l~~~~~~~~~~~~---~~~-~--~~~~~~~~l~ 736 (840)
.++ .+.. +.....-..+++++..++...+. ++.+.+ ...+++.+..++.+.+ .|. + -+..+..+.+
T Consensus 738 ---~~d--~d~~-~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~ 811 (861)
T 2bpt_A 738 ---NGT--LEAL-DYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA 811 (861)
T ss_dssp ---SSS--HHHH-HHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred ---CCC--hHHH-HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence 011 0000 00000012455555444433331 355666 3577887777653321 444 2 2225555554
Q ss_pred CC-CCCCCccchhHHHHHHHhhhhhhhhhhcc--cchhhhhhHhhhHHHHHHHH
Q 003195 737 DS-AGTSPHAGISSLIQELFHTVSPKVVECIS--TVKIAQVHISASECLLEICK 787 (840)
Q Consensus 737 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~k~~~vr~~a~~~l~~i~~ 787 (840)
.- ++. +.+++.. .+.|.+..+++ .++++.+|..|-.+++++-.
T Consensus 812 ~~~g~~-----~~~~~~~---~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 812 MFPDGS-----IKQFYGQ---DWVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp HCTTST-----TGGGTTC---HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred HcCCch-----HHHHHhc---HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 33 333 3344430 34444445454 35667799999999998864
No 3
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=5.7e-31 Score=337.49 Aligned_cols=601 Identities=13% Similarity=0.114 Sum_probs=436.3
Q ss_pred HHHHHHhhcCCCCHhHHHHH-HHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhH
Q 003195 117 LIPKLVRFQYDPDKNVQDAM-AHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGK 195 (840)
Q Consensus 117 lvP~L~~~~~Dp~~~VR~a~-~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~ 195 (840)
-++.|+.-..+|++.+|+.+ .++++.+..+....-+...+.+++.++..+.|++|++|.+|+.+++.+.++.+. +
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~----~ 82 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE----Y 82 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH----H
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH----H
Confidence 35556666699999999965 678887765432222245677888899999999999999999999999987653 6
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccC-CchhHHHHHHHHH
Q 003195 196 HLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGIL-SKVDSISKASIGV 274 (840)
Q Consensus 196 ~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~-s~~~evr~~al~~ 274 (840)
+++.+++.++..+.|.++.||.+|..++..+...+ .+............+.++|.|+. ++. ++++++|..++.+
T Consensus 83 ~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l----~~~~~~~~~~~~~~~~llp~L~~-~l~~~~~~~~~~~al~~ 157 (1230)
T 1u6g_C 83 QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGEL----PPASSGSALAANVCKKITGRLTS-AIAKQEDVSVQLEALDI 157 (1230)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHC----C-----CCTHHHHHHHHHHHHHH-HHSCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhC----CCcccccchHHHHHHHHHHHHHH-HHcCCCchHHHHHHHHH
Confidence 78899999999999999999999877776664332 21100001234567899999984 576 4778999999999
Q ss_pred HHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhh
Q 003195 275 VMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTES 354 (840)
Q Consensus 275 L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~ 354 (840)
+.++++..|+.+.||++.+++.|+..+.+.++.+ |..+ ..++..++...+++.
T Consensus 158 l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~v---------------------R~~a------~~al~~l~~~~~~~~ 210 (1230)
T 1u6g_C 158 MADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAV---------------------RKRT------IIALGHLVMSCGNIV 210 (1230)
T ss_dssp HHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHH---------------------HHHH------HHHHHHHTTTC----
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHH---------------------HHHH------HHHHHHHHHhcCHHH
Confidence 9999999999999999999999999988655433 2221 245666777766666
Q ss_pred HhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHH
Q 003195 355 LDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS 434 (840)
Q Consensus 355 l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~ 434 (840)
++.++|.+.+.+++..+...|..++++++.++...|..|.||.+.+++.++..+ .|.++.||+.+..+++.+++.++.+
T Consensus 211 ~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l-~d~~~~vR~~a~~~l~~l~~~~~~~ 289 (1230)
T 1u6g_C 211 FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFC-NVDDDELREYCIQAFESFVRRCPKE 289 (1230)
T ss_dssp CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHH-SSCCTTTHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHChHH
Confidence 778889998888776455678899999999999999999999999999999999 7888999999999999999987754
Q ss_pred ---HHHHHHHHHHHhhcC------------------------------------C--hhhhHHHHHHHHHHHhhchhhhh
Q 003195 435 ---QAQKLIEETAALHID------------------------------------D--KNSQISCAILLKSYSSVASDVLS 473 (840)
Q Consensus 435 ---~~~~li~~l~~~~~~------------------------------------d--~~~r~~~~~~i~ai~~~~~~~f~ 473 (840)
.+..+++.+.+.+.. | +..|.+++.++..++...++.|.
T Consensus 290 ~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~ 369 (1230)
T 1u6g_C 290 VYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLP 369 (1230)
T ss_dssp CHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHH
Confidence 344444444332210 0 12488899999999988887899
Q ss_pred hhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcC-------------------CChhhHHhhHHHHHHHHHhhhcCCCHH
Q 003195 474 GYHAVIVPVIFISRFEDDKYVSDLFEELWEENTS-------------------GDRVTLQLYLGEIVSLICEGIASSSWS 534 (840)
Q Consensus 474 ~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~-------------------~~~~~i~~yl~~Il~~l~~~L~d~s~~ 534 (840)
++++.++|.+.....|.+++||....+.+..++. ++...+..+++.+++.+.+.+.|++|.
T Consensus 370 ~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~ 449 (1230)
T 1u6g_C 370 EFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVK 449 (1230)
T ss_dssp HHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHH
Confidence 9999999987666678888898655444433332 223456789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHH
Q 003195 535 SKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLW--EGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSS 612 (840)
Q Consensus 535 vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~--~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~ 612 (840)
+|..+..+++.++...++.+.+|++.++|.+.+.+.++.+ ..++.++.++..++...+.... .+|++.+++.+.+
T Consensus 450 vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~---~~~l~~llp~L~~ 526 (1230)
T 1u6g_C 450 TRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVF---HPHVQALVPPVVA 526 (1230)
T ss_dssp HHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGG---HHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHH---HhHHHHHHHHHHH
Confidence 9999999999999998888889999999999999998876 7888899999888876554321 2677888999998
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHcCC------cch----HHhHHHHHHhhcccccccCCCCCCCCCCccchhhhccccCC
Q 003195 613 ACRKKIKKYREAAFSCLEQVIKAFRD------PKF----FNIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADESVSA 682 (840)
Q Consensus 613 ~~~~~~~~~R~~Al~~L~~l~~~~~~------~~l----~~~v~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (840)
.+.++++.+|..|+.+++.+++.++. ..+ ..++..++..+... |. +.+
T Consensus 527 ~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~-------------d~------~~~--- 584 (1230)
T 1u6g_C 527 CVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAA-------------DI------DQE--- 584 (1230)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCS-------------SS------CHH---
T ss_pred HHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhcc-------------CC------CHH---
Confidence 88899999999999999999998865 122 33334444444211 00 001
Q ss_pred chhHHHhhhhhhHHhhchhhHHHh-hhhhHHHHHhhcCCCCChHHHHHHHHhhhcCCCCCCCccchhHHHHHHHhhhhhh
Q 003195 683 PLDKVLDCVSSCIHVAHVNDIIEQ-EKNLVQLFTISLSPGFPWTELCSRLQKTLDDSAGTSPHAGISSLIQELFHTVSPK 761 (840)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (840)
.-...+.|+..+....|. .+.+ ...+++.+...+..+......+..+..+.....+ .++.+++ +.+.|.
T Consensus 585 vr~~a~~~lg~L~~~~g~--~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~----~~~~~~~----~~i~~~ 654 (1230)
T 1u6g_C 585 VKERAISCMGQIICNLGD--NLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLK----IDLRPVL----GEGVPI 654 (1230)
T ss_dssp HHHHHHHHHHHHHHHTGG--GCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSC----CCCHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHHhCc--hhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccc----cchHHHH----HHHHHH
Confidence 112455666655444433 2333 3577888877763332222333345555432221 2344444 444555
Q ss_pred hhhhcccchhhhhhHhhhHHHHHHHHHhh
Q 003195 762 VVECISTVKIAQVHISASECLLEICKLFR 790 (840)
Q Consensus 762 ~~~~~~~~k~~~vr~~a~~~l~~i~~~~~ 790 (840)
+.+.+ .+.+..+|..|..|++.++.+.+
T Consensus 655 L~~~l-~~~~~~~r~~a~~al~~l~~~~~ 682 (1230)
T 1u6g_C 655 LASFL-RKNQRALKLGTLSALDILIKNYS 682 (1230)
T ss_dssp HHHHT-TSCCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHH-HhCCHHHHHHHHHHHHHHHhccc
Confidence 55555 34557899999999999999885
No 4
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=9.9e-29 Score=305.42 Aligned_cols=665 Identities=11% Similarity=0.080 Sum_probs=457.0
Q ss_pred hHHHHHHHhhh----cCCchHHHHHHHHhcccc-chhhhhhHHhHHHHHHHHh-hhhhchhhhhHHHHHHhhcCCC--CH
Q 003195 59 TYKELCNLANE----MGQPDLIYKFMDLANYQV-SLNSKRGAAFGFSKIAKQA-GDALKPHLRLLIPKLVRFQYDP--DK 130 (840)
Q Consensus 59 tyk~l~~lA~~----~g~p~lv~~fm~la~~~~-~w~sr~gA~~~l~~I~~~~-~~~l~~~l~~lvP~L~~~~~Dp--~~ 130 (840)
....|..++.. -.||+++..++...++.. .+..|++++.+|+.+++.. ++.+.++++.++|.+..+..|+ ++
T Consensus 109 ~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~ 188 (876)
T 1qgr_A 109 ASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSN 188 (876)
T ss_dssp HHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCH
T ss_pred HHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCH
Confidence 33445555543 458999999999886652 5788999999999999875 5678899999999999999998 79
Q ss_pred hHHHHHHHHHHHhccCChHHHH--HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHH-HHHHHHHHH
Q 003195 131 NVQDAMAHIWKSLVADPKRTID--EHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLR-RIWTAAFRA 207 (840)
Q Consensus 131 ~VR~a~~~iw~~Lv~d~~~~i~--~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~-~l~~~l~~~ 207 (840)
.||..+..++..++......+. ...+.+++.+...+.+.++++|.++|.+|..+++..+ +.+.+|+. .+++.++..
T Consensus 189 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~~~~~ 267 (876)
T 1qgr_A 189 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY-QYMETYMGPALFAITIEA 267 (876)
T ss_dssp HHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG-GGCHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHH
Confidence 9999999998887753222111 1113477777888888899999999999999987653 45789999 999999999
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHHhh--------hc---cccccchHHhHHHhHHHHHHhcccC-------CchhHHHH
Q 003195 208 MDDIKETVRTAGDKLCRSVTSLTIRLC--------DV---TLTEISDARQSMDIVLPFLLAEGIL-------SKVDSISK 269 (840)
Q Consensus 208 ldD~~~~VR~aA~~~~~~l~~~~ir~~--------~~---~~~~~~~~~~~l~~lLP~Ll~~gL~-------s~~~evr~ 269 (840)
+.|..+.||..|...+..+.+...... +. ...........+..++|.+++ .+. ++++.+|.
T Consensus 268 ~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~-~l~~~~~d~~~~~~~~r~ 346 (876)
T 1qgr_A 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ-TLTKQDENDDDDDWNPCK 346 (876)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHH-HTTCCCSSCCTTCCCHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHH-HhhcccccccccccHHHH
Confidence 999999999999888777765421100 00 000011223345677887764 232 34578899
Q ss_pred HHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhh
Q 003195 270 ASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINV 349 (840)
Q Consensus 270 ~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~ 349 (840)
.+..++..++...|+ ..++.++|.+.+.+.+
T Consensus 347 ~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~---------------------------------------------- 377 (876)
T 1qgr_A 347 AAGVCLMLLATCCED---DIVPHVLPFIKEHIKN---------------------------------------------- 377 (876)
T ss_dssp HHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTC----------------------------------------------
T ss_pred HHHHHHHHHHHHCcH---hhHHHHHHHHHHHccC----------------------------------------------
Confidence 999999888887774 2345555555444432
Q ss_pred cChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhc-cCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhh
Q 003195 350 VDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIG-MDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVL 428 (840)
Q Consensus 350 ~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~-~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~ 428 (840)
. +|.+|.+++.+++.++..++ ..+.+|.+.+++.++..+ .|+++.||.+++.+++.++
T Consensus 378 -------------------~-~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l-~d~~~~vr~~a~~~l~~~~ 436 (876)
T 1qgr_A 378 -------------------P-DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM-KDPSVVVRDTAAWTVGRIC 436 (876)
T ss_dssp -------------------S-SHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHH
T ss_pred -------------------C-ChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHH
Confidence 1 34556677777777665554 446688999999999999 8999999999999999999
Q ss_pred hcCCH-----HHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHhhch--------------hhhhhhHhhHhHHHHHhhcC
Q 003195 429 KYATP-----SQAQKLIEETAALHIDDKNSQISCAILLKSYSSVAS--------------DVLSGYHAVIVPVIFISRFE 489 (840)
Q Consensus 429 ~~~~~-----~~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~--------------~~f~~~~~~llP~l~~~~~d 489 (840)
+..++ +.+..+++.+...+.+++.+|..++.+++.++...+ +.+.+|++.++|.++....+
T Consensus 437 ~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~ 516 (876)
T 1qgr_A 437 ELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDR 516 (876)
T ss_dssp HHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTS
T ss_pred HhCchhcccHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhC
Confidence 87654 456677777777765567788889999999988765 34789999999988776554
Q ss_pred C---chHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcC-----------CC----HHHHHHHHHHHHHHHHHhC
Q 003195 490 D---DKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIAS-----------SS----WSSKRKSAKAICKLGEILG 551 (840)
Q Consensus 490 ~---d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d-----------~s----~~vR~~Aa~~L~~La~~~~ 551 (840)
. +..+|....+.+..++...+....+|++.+++.+.+.+.+ .+ .++|..+..+++.++...|
T Consensus 517 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~ 596 (876)
T 1qgr_A 517 PDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQ 596 (876)
T ss_dssp CSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3 3468876667766666555456778888888888776642 22 4678899999999999999
Q ss_pred -cchhhhHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhc-CHHHHHHHHH
Q 003195 552 -ESLSNYHHVLLESIMKEVPGRL--WEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKK-IKKYREAAFS 627 (840)
Q Consensus 552 -~~l~~~l~~llp~L~~~l~~r~--~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~R~~Al~ 627 (840)
+.+.+|++.++|.+.+.++... +..|+.++.+++.++..++..+. +|++.+++.+...+.+. ++.+|..|+.
T Consensus 597 ~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~~vr~~a~~ 672 (876)
T 1qgr_A 597 HQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFL----KYMEAFKPFLGIGLKNYAEYQVCLAAVG 672 (876)
T ss_dssp HHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGG----GGHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 8999999999999999998764 57899999999999998776553 78999999999988876 8999999999
Q ss_pred HHHHHHHHcCCcchH----HhHHHHHHhhcccccccCCCCCCCCCCccchhhhccccCCchhHHHhhhhhhHHhhchhhH
Q 003195 628 CLEQVIKAFRDPKFF----NIIFPLLFEMCGSTALNKSGQVPLPSDASKEESADESVSAPLDKVLDCVSSCIHVAHVNDI 703 (840)
Q Consensus 628 ~L~~l~~~~~~~~l~----~~v~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (840)
+++.++..++. ++. .++..++..+.+... + . .....++.++..+....|. +
T Consensus 673 ~l~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~-----------~--------~---~~~~~~~~~l~~i~~~~g~-~- 727 (876)
T 1qgr_A 673 LVGDLCRALQS-NIIPFCDEVMQLLLENLGNENV-----------H--------R---SVKPQILSVFGDIALAIGG-E- 727 (876)
T ss_dssp HHHHHHHHHGG-GGHHHHHHHHHHHHHHHTCTTS-----------C--------G---GGHHHHHHHHHHHHHHHGG-G-
T ss_pred HHHHHHHHHHH-hhhhhHHHHHHHHHHHhCCccc-----------c--------H---HhhHHHHHHHHHHHHHhch-h-
Confidence 99999998874 333 333334443332100 0 0 1112455665544433332 2
Q ss_pred HHh-hhhhHHHHHhhcCCCCC-----h--------HHHHHHHHhhhcCCCCC-----CCccchhHHHHHHHhhhhhhhhh
Q 003195 704 IEQ-EKNLVQLFTISLSPGFP-----W--------TELCSRLQKTLDDSAGT-----SPHAGISSLIQELFHTVSPKVVE 764 (840)
Q Consensus 704 ~~~-~~~l~~~~~~~~~~~~~-----~--------~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 764 (840)
|.+ ...++|.+..++..... | ..+...+..+++.-++. .....+.+++..++..+.....+
T Consensus 728 ~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 807 (876)
T 1qgr_A 728 FKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGD 807 (876)
T ss_dssp GGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcC
Confidence 555 45788888887643320 1 12233444444322211 00135677788777544322211
Q ss_pred hcccchhhhhhHhhhHHHHHHHHHhhh---ccc-ccccccchhhhhHH-HHHhhhhHhHHHHHHHHHHHhccc
Q 003195 765 CISTVKIAQVHISASECLLEICKLFRQ---ISS-VYSSNIGIKGELVH-QCEMEKNMEAKSLLKKCIDILENL 832 (840)
Q Consensus 765 ~~~~~k~~~vr~~a~~~l~~i~~~~~~---~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 832 (840)
+..+..+|..|+.|||+++.++|. .|| ...+. ..++. .+ ...+++-|..-..++..++.+
T Consensus 808 ---~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i----~~ll~~~l-~~~~~~~r~~a~~a~~~~~~~ 872 (876)
T 1qgr_A 808 ---EDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMI----HELLTEGR-RSKTNKAKTLARWATKELRKL 872 (876)
T ss_dssp ---SCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHH----HHHHHHHH-HCSCHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHH----HHHHHHHh-hcCCHhHHHHHHHHHHHHHHh
Confidence 111578999999999999999954 555 22333 33333 22 234455555444444444433
No 5
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1.5e-30 Score=333.72 Aligned_cols=510 Identities=11% Similarity=0.107 Sum_probs=385.4
Q ss_pred hHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChH----
Q 003195 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKR---- 149 (840)
Q Consensus 74 ~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~---- 149 (840)
.++..++....+ ..|..|++|+.+++.+++++++ +++..++|.|.....|+++.||.++..+++.++.....
T Consensus 48 ~il~~Ll~~L~d-~~~~vR~~A~~~L~~l~~~~~~---~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 48 KVVKMILKLLED-KNGEVQNLAVKCLGPLVSKVKE---YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTSCH---HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 455666665553 4699999999999999987755 67888999999999999999999999988888754322
Q ss_pred --HHHHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 003195 150 --TIDEHLDLIFDDLLIQSG-SRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSV 226 (840)
Q Consensus 150 --~i~~~~~~Il~~Ll~~l~-~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l 226 (840)
....+++.++|.|+..+. +++|++|++++.++.++++..+ +.+.+|++.+++.++..+.|.+..||++|..++..+
T Consensus 124 ~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~-~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l 202 (1230)
T 1u6g_C 124 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG-GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHL 202 (1230)
T ss_dssp CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC-SSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 255689999999999998 4889999999999999987543 357789999999999999999999999998777666
Q ss_pred HHHHHHhhhccccccchHHhHHHhHHHHHHhcccCC-chhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCch
Q 003195 227 TSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILS-KVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLE 305 (840)
Q Consensus 227 ~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s-~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~e 305 (840)
+. .+. ...++.++|.|++ .+.+ +.+.+|..++++++.++...|+.+.||+++++|.+++.+.+.+
T Consensus 203 ~~----~~~---------~~~~~~~l~~l~~-~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~ 268 (1230)
T 1u6g_C 203 VM----SCG---------NIVFVDLIEHLLS-ELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDD 268 (1230)
T ss_dssp TT----TC-------------CTTHHHHHHH-HHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCC
T ss_pred HH----hcC---------HHHHHHHHHHHHH-HhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 32 111 1223445555543 2222 2246888899999999999999999999999999999998766
Q ss_pred hHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChh---hHhhHHHHHHHHH----------------
Q 003195 306 DQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTE---SLDQLVPHLARLV---------------- 366 (840)
Q Consensus 306 p~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~---~l~~lvp~L~~~l---------------- 366 (840)
+.++.+.... ++.++...+.+ .++.++|.+.+.+
T Consensus 269 ~~vR~~a~~~---------------------------l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~ 321 (1230)
T 1u6g_C 269 DELREYCIQA---------------------------FESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDEN 321 (1230)
T ss_dssp TTTHHHHHHH---------------------------HHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-------------
T ss_pred HHHHHHHHHH---------------------------HHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 6544332211 11111111110 1122222222111
Q ss_pred --------------------hccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHH
Q 003195 367 --------------------RSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACAS 426 (840)
Q Consensus 367 --------------------k~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~ 426 (840)
.+...|.+|.+|+.++..++...+..+.+|.+.+++.++..+ .|++..||..++.+++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l-~d~~~~Vr~~a~~~l~~ 400 (1230)
T 1u6g_C 322 AMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRF-KEREENVKADVFHAYLS 400 (1230)
T ss_dssp -----------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTT-SCSSSHHHHHHHHHHHH
T ss_pred cccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHH
Confidence 112246679999999999998777778899999999999998 79999999999999999
Q ss_pred hhhcCCH------------------HHHHHHHHHHHHh----hc-CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHH
Q 003195 427 VLKYATP------------------SQAQKLIEETAAL----HI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVI 483 (840)
Q Consensus 427 l~~~~~~------------------~~~~~li~~l~~~----~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l 483 (840)
+++..+. ..+..+++.+... +. +++..|..+..+++.++...++.+.+|++.++|.+
T Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l 480 (1230)
T 1u6g_C 401 LLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGI 480 (1230)
T ss_dssp HHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHH
T ss_pred HHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHH
Confidence 8875321 2334444444433 43 35667888999999999888887889999999999
Q ss_pred HHhhcCCch--HHHHHHHHHHHHhcCC-ChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCc-------c
Q 003195 484 FISRFEDDK--YVSDLFEELWEENTSG-DRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE-------S 553 (840)
Q Consensus 484 ~~~~~d~d~--~vr~~~~~i~~~~~~~-~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~-------~ 553 (840)
+....|..+ +++......+..+... .+..+.+|++.+++.+...+.|.+|++|..|..+++++++..|. .
T Consensus 481 ~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~ 560 (1230)
T 1u6g_C 481 IFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFD 560 (1230)
T ss_dssp HHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred HHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccc
Confidence 888877653 6776544544444332 23457889999999999999999999999999999999999876 7
Q ss_pred hhhhHHHHHHHHHHhc--CCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 003195 554 LSNYHHVLLESIMKEV--PGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQ 631 (840)
Q Consensus 554 l~~~l~~llp~L~~~l--~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~ 631 (840)
+.+|++.++|.++..+ .+...+.|+.++.+++.++..+++.+. ++++.+++.+...+.. ..+|..++.+++.
T Consensus 561 ~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~----~~~~~~l~~L~~~l~~--e~~r~~~~~al~~ 634 (1230)
T 1u6g_C 561 ATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLG----SDLPNTLQIFLERLKN--EITRLTTVKALTL 634 (1230)
T ss_dssp CHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCC----THHHHHHHHHHHHTTS--SSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhh----hhHHHHHHHHHHHhcc--chhHHHHHHHHHH
Confidence 8899999999999999 566778999999999999998886543 6889999988887653 3589999999999
Q ss_pred HHHHc
Q 003195 632 VIKAF 636 (840)
Q Consensus 632 l~~~~ 636 (840)
++...
T Consensus 635 i~~~~ 639 (1230)
T 1u6g_C 635 IAGSP 639 (1230)
T ss_dssp HTTCS
T ss_pred HHhCc
Confidence 88654
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=3e-29 Score=309.52 Aligned_cols=553 Identities=12% Similarity=0.091 Sum_probs=423.5
Q ss_pred cchHHHHHHHhhhcC--------CchHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhhh-hHHHHHHhhcCC
Q 003195 57 LSTYKELCNLANEMG--------QPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLR-LLIPKLVRFQYD 127 (840)
Q Consensus 57 ~styk~l~~lA~~~g--------~p~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~-~lvP~L~~~~~D 127 (840)
.++.+++..+...++ ++.++..+..+.. +..|..|++++-+|+.+++..++.+.+++. .+++.+.....|
T Consensus 199 ~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~ 277 (861)
T 2bpt_A 199 LAALNALADSLIFIKNNMEREGERNYLMQVVCEATQ-AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKS 277 (861)
T ss_dssp HHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456666666543332 1234444444443 345899999999999999998889999999 999999999999
Q ss_pred CCHhHHHHHHHHHHHhccCCh-----------------HHHHHHHHHHHHHHHHhhCC-------CChhHHHHHHHHHHH
Q 003195 128 PDKNVQDAMAHIWKSLVADPK-----------------RTIDEHLDLIFDDLLIQSGS-------RLWRSREASCLSLAD 183 (840)
Q Consensus 128 p~~~VR~a~~~iw~~Lv~d~~-----------------~~i~~~~~~Il~~Ll~~l~~-------~~wrvR~aac~Al~~ 183 (840)
+++.||..+...|..++.... .....++..+++.++..+.+ .+|.+|.+++.++..
T Consensus 278 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~ 357 (861)
T 2bpt_A 278 PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQL 357 (861)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHH
Confidence 999999999999999886421 23456778899999988863 469999999999999
Q ss_pred HHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCc
Q 003195 184 IIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSK 263 (840)
Q Consensus 184 Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~ 263 (840)
+....+ ...++.+++.+...+.|....+|++|..++..+++ .+. .......++.++|.|+. .+.++
T Consensus 358 l~~~~~----~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~----~~~-----~~~~~~~l~~il~~l~~-~l~d~ 423 (861)
T 2bpt_A 358 FAQNCG----NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMD----GPD-----KVQRTYYVHQALPSILN-LMNDQ 423 (861)
T ss_dssp HHHHHG----GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS----SSC-----HHHHHHHHHHHHHHHHH-GGGCS
T ss_pred HHHHcc----HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHc----CCC-----HHHHHHHHHHHHHHHHH-HcCCC
Confidence 887543 23456778888888889889999998776655531 111 01234567788998874 57777
Q ss_pred hhHHHHHHHHHHHHHHHhhcccc--ccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHH
Q 003195 264 VDSISKASIGVVMKLVKGAGIAI--RPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWD 341 (840)
Q Consensus 264 ~~evr~~al~~L~~la~~~g~~l--~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~e 341 (840)
++.+|..++.+++.++...+..+ .+|++.++|.+++.+.+. +.+....+ .
T Consensus 424 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~---------------------------~ 475 (861)
T 2bpt_A 424 SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCS---------------------------W 475 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHH---------------------------H
T ss_pred cHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHH---------------------------H
Confidence 89999999999999999887765 689999999999998764 44332221 1
Q ss_pred HHHHHHhhcC-------hhhHhhHHHHHHHHHhccC-CCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhh---
Q 003195 342 TLDLCINVVD-------TESLDQLVPHLARLVRSGI-GLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKE--- 410 (840)
Q Consensus 342 al~~~~~~~d-------~~~l~~lvp~L~~~lk~~~-~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~--- 410 (840)
++..+++..+ ...++.+++.+.+.+++.. +..+|..++.+++.++...+..+.+|.+.+++.++..+..
T Consensus 476 al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 555 (861)
T 2bpt_A 476 TIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMS 555 (861)
T ss_dssp HHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHh
Confidence 2333333222 1345778888888887532 3578999999999999999999999999999999988832
Q ss_pred -----------cCcHHHHHHHHHHHHHhhhcCCHH---HHHHHHHHHHHhhc-CCh-hhhHHHHHHHHHHHhhchhhhhh
Q 003195 411 -----------EKSAAAKRAFASACASVLKYATPS---QAQKLIEETAALHI-DDK-NSQISCAILLKSYSSVASDVLSG 474 (840)
Q Consensus 411 -----------d~~~~Vr~~a~~Alg~l~~~~~~~---~~~~li~~l~~~~~-~d~-~~r~~~~~~i~ai~~~~~~~f~~ 474 (840)
+....+|..++.+++.+++..+.. ....+++.+.+.+. .+. ..|..+..+++.++...++.|.+
T Consensus 556 ~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~ 635 (861)
T 2bpt_A 556 VDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEK 635 (861)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHH
T ss_pred hhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHH
Confidence 224568889999999999887753 23455555555553 234 67888889999999999999999
Q ss_pred hHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCC--HHHHHHHHHHHHHHHHHhCc
Q 003195 475 YHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSS--WSSKRKSAKAICKLGEILGE 552 (840)
Q Consensus 475 ~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s--~~vR~~Aa~~L~~La~~~~~ 552 (840)
|++.++|.++....++++++|..+..+...+....+..+.+|++.+++.+.+.+.+++ +.+|..+..+++.++...|+
T Consensus 636 ~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 636 YLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715 (861)
T ss_dssp HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh
Confidence 9999999998877777778888777777777666666789999999999999998875 89999999999999999999
Q ss_pred chhhhHHHHHHHHHHhcCCCC-----------chhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhc----
Q 003195 553 SLSNYHHVLLESIMKEVPGRL-----------WEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKK---- 617 (840)
Q Consensus 553 ~l~~~l~~llp~L~~~l~~r~-----------~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~---- 617 (840)
.+.+|++.++|.+.+.+.... +..|+.+++++..++...+.. .....+|++.+++.+.+.+.+.
T Consensus 716 ~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~-~~~~~~~~~~i~~~l~~~~~d~~~~~ 794 (861)
T 2bpt_A 716 DFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK-PEALFPYVGTIFQFIAQVAEDPQLYS 794 (861)
T ss_dssp GGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTC-HHHHGGGHHHHHHHHHHHHHCHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHHcCcccCC
Confidence 999999999999999987432 457899999999999887631 0112278999999998887663
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcch----H-HhHHHHHHhhc
Q 003195 618 IKKYREAAFSCLEQVIKAFRDPKF----F-NIIFPLLFEMC 653 (840)
Q Consensus 618 ~~~~R~~Al~~L~~l~~~~~~~~l----~-~~v~~i~~~l~ 653 (840)
+..+|..|+.+++.++..+++..+ . .++..++..+.
T Consensus 795 ~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~ 835 (861)
T 2bpt_A 795 EDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTR 835 (861)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHh
Confidence 889999999999999999955443 3 34555565554
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.97 E-value=1.1e-27 Score=295.70 Aligned_cols=529 Identities=13% Similarity=0.139 Sum_probs=408.0
Q ss_pred hHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCC--hHHH
Q 003195 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP--KRTI 151 (840)
Q Consensus 74 ~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~--~~~i 151 (840)
+++..+..+.++. ++.-|++|+-+|+.+++..++.+.||+..++|.++....|+++.||..+...|..+.... +..+
T Consensus 215 ~~l~~l~~~~~d~-~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~ 293 (852)
T 4fdd_A 215 SFIENLFALAGDE-EPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVL 293 (852)
T ss_dssp HHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4555666655443 478899999999999999999999999999999999999999999999999999998653 2334
Q ss_pred HHHHHHHHHHHHHhh-----------CC-----------CChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhc
Q 003195 152 DEHLDLIFDDLLIQS-----------GS-----------RLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMD 209 (840)
Q Consensus 152 ~~~~~~Il~~Ll~~l-----------~~-----------~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ld 209 (840)
..++..+++.++..+ +| .+|++|.+++.+++.+....+ + ..++.+++.+...+.
T Consensus 294 ~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~---~~~~~l~~~l~~~l~ 369 (852)
T 4fdd_A 294 VRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-D---ELLPHILPLLKELLF 369 (852)
T ss_dssp TTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-G---GGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc-H---HHHHHHHHHHHHHhc
Confidence 557778888888887 45 689999999999999987543 2 345677888888889
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhcc-cccc
Q 003195 210 DIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGI-AIRP 288 (840)
Q Consensus 210 D~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~-~l~p 288 (840)
|.+..+|.+|..++..+++.+ . ......++.++|.++. .+.++++.||..++.++++++...+. ...+
T Consensus 370 ~~~~~~R~aa~~alg~i~~~~----~------~~~~~~l~~~l~~l~~-~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~ 438 (852)
T 4fdd_A 370 HHEWVVKESGILVLGAIAEGC----M------QGMIPYLPELIPHLIQ-CLSDKKALVRSITCWTLSRYAHWVVSQPPDT 438 (852)
T ss_dssp CSSHHHHHHHHHHHHHTTTTT----H------HHHGGGHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHTHHHHHHSCTTT
T ss_pred CCCHHHHHHHHHHHHHHHhcc----h------HHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHhccchHHH
Confidence 999999999987777664322 1 1123467888998874 67788899999999999999987654 4789
Q ss_pred chHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcC---hhhHhhHHHHHHHH
Q 003195 289 HLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVD---TESLDQLVPHLARL 365 (840)
Q Consensus 289 ~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d---~~~l~~lvp~L~~~ 365 (840)
|++.+++.|++.+.+.++.+....+ .++..+++..+ ...++.+++.+...
T Consensus 439 ~~~~ll~~L~~~L~d~~~~vr~~a~---------------------------~aL~~l~~~~~~~l~~~l~~ll~~L~~~ 491 (852)
T 4fdd_A 439 YLKPLMTELLKRILDSNKRVQEAAC---------------------------SAFATLEEEACTELVPYLAYILDTLVFA 491 (852)
T ss_dssp THHHHHHHHHHHHTCSSHHHHHHHH---------------------------HHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH---------------------------HHHHHHHHHhhHhhHhHHHHHHHHHHHH
Confidence 9999999999999876555433222 22333333222 22467788888888
Q ss_pred HhccCCCchHhHHHHHHHHHHHHhccCcc--ccHHHHHHHHHHhHh--hcCcHHHHHHHHHHHHHhhhcCCHHH---HHH
Q 003195 366 VRSGIGLNTRVGVASFISLLVQKIGMDIK--PYTSMLLRLLFPVVK--EEKSAAAKRAFASACASVLKYATPSQ---AQK 438 (840)
Q Consensus 366 lk~~~~~~~r~~a~~~l~~L~~~~~~~~~--p~~~~lL~~Ll~~l~--~d~~~~Vr~~a~~Alg~l~~~~~~~~---~~~ 438 (840)
+++. ....+..+.++++.++...|..+. +|.+.+++.++..+. .|....++ .+..+++.++...+... ...
T Consensus 492 l~~~-~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~ 569 (852)
T 4fdd_A 492 FSKY-QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEP 569 (852)
T ss_dssp HHHC-CHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHHh-ChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHH
Confidence 8754 233344578888888888887775 488899998885431 34445554 77888888887766532 122
Q ss_pred HHHHHHHhh----------------c--CChhhhHHHHHHHHHHHhhchhhhhhhH--hhHhHHHHHhhcCCchHHHHHH
Q 003195 439 LIEETAALH----------------I--DDKNSQISCAILLKSYSSVASDVLSGYH--AVIVPVIFISRFEDDKYVSDLF 498 (840)
Q Consensus 439 li~~l~~~~----------------~--~d~~~r~~~~~~i~ai~~~~~~~f~~~~--~~llP~l~~~~~d~d~~vr~~~ 498 (840)
+++.+++.+ . .|.+.+..+..+++.+++..++.|.+|+ +.++|+++....|+..++|..+
T Consensus 570 i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a 649 (852)
T 4fdd_A 570 VYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSS 649 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHH
Confidence 222222111 1 1455788889999999999999999997 7899999888888889999988
Q ss_pred HHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCC--chh
Q 003195 499 EELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRL--WEG 576 (840)
Q Consensus 499 ~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~--~~~ 576 (840)
..++.+++..++..+.+|++.+++.+.+.+.+..+.+|..|+.++|.++...|+.+.||+..+++.|.+.++... ...
T Consensus 650 ~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~ 729 (852)
T 4fdd_A 650 FALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTL 729 (852)
T ss_dssp HHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchH
Confidence 899998887777789999999999999999999999999999999999999999999999999999999997653 467
Q ss_pred HHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHcCCcchHHhHHHHHHhh
Q 003195 577 KDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRK-KIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEM 652 (840)
Q Consensus 577 Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~~l 652 (840)
++.+..+++.++..++..+. |+++++++...+.+.. ++..-|..|+..+..++..-|+ .+...+..+...+
T Consensus 730 ~~~a~~~igrl~~~~~~~~~----~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~-~~~~~~~~~~~~~ 801 (852)
T 4fdd_A 730 LENTAITIGRLGYVCPQEVA----PMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS-GVIQDFIFFCDAV 801 (852)
T ss_dssp HHHHHHHHHHHHHHCHHHHG----GGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGG-GTGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHhC----ccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChH-hHHHHHHHHHHHH
Confidence 99999999999998766443 7899999999998864 5667899999999999998776 3444444444444
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.97 E-value=3.4e-27 Score=291.71 Aligned_cols=549 Identities=11% Similarity=0.087 Sum_probs=403.1
Q ss_pred chHHHHHHHhhhcCC-------chHHHHHHHHhccc-cchhhhhhHHhHHHHHHHHhhhhhchh--hhhHHHHHHhhcCC
Q 003195 58 STYKELCNLANEMGQ-------PDLIYKFMDLANYQ-VSLNSKRGAAFGFSKIAKQAGDALKPH--LRLLIPKLVRFQYD 127 (840)
Q Consensus 58 styk~l~~lA~~~g~-------p~lv~~fm~la~~~-~~w~sr~gA~~~l~~I~~~~~~~l~~~--l~~lvP~L~~~~~D 127 (840)
.+.+.|..++.++++ +.++..++....+. ..+.-|..|+-+|+.+++..+..+... ...+++.+..+..|
T Consensus 149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~ 228 (876)
T 1qgr_A 149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 228 (876)
T ss_dssp HHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCC
Confidence 456667777776542 35566666665544 246778888888888876544333321 12477888888899
Q ss_pred CCHhHHHHHHHHHHHhccCChHHHHHHHH-HHHHHHHHhhCCCChhHHHHHHHHHHHHHccC------------------
Q 003195 128 PDKNVQDAMAHIWKSLVADPKRTIDEHLD-LIFDDLLIQSGSRLWRSREASCLSLADIIQGR------------------ 188 (840)
Q Consensus 128 p~~~VR~a~~~iw~~Lv~d~~~~i~~~~~-~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~------------------ 188 (840)
+++.||.++..++..++...++.+..|+. .+++.++..+.+.+..+|..++..+..+.+..
T Consensus 229 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 308 (876)
T 1qgr_A 229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPE 308 (876)
T ss_dssp SSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCS
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCcc
Confidence 99999999999999988766566777888 89999999999999999999998887776531
Q ss_pred --CchhhhHHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcc
Q 003195 189 --KFDQVGKHLRRIWTAAFRAMD-------DIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEG 259 (840)
Q Consensus 189 --~~~~l~~~L~~l~~~l~~~ld-------D~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~g 259 (840)
......+++..+++.+++.+. |....+|.+|..++..++..+ +..+++.++|++.+ .
T Consensus 309 ~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~-------------~~~~~~~~l~~l~~-~ 374 (876)
T 1qgr_A 309 HTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC-------------EDDIVPHVLPFIKE-H 374 (876)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH-------------GGGGHHHHHHHHHH-H
T ss_pred chhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHC-------------cHhhHHHHHHHHHH-H
Confidence 112344577899999998883 334579999988888876543 12456778888764 5
Q ss_pred cCCchhHHHHHHHHHHHHHHHhhc-cccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCc
Q 003195 260 ILSKVDSISKASIGVVMKLVKGAG-IAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSP 338 (840)
Q Consensus 260 L~s~~~evr~~al~~L~~la~~~g-~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~ 338 (840)
+.+++|.+|..++.+++.++...+ ..+.||++.++|.++..+.+..+.++....+
T Consensus 375 l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~------------------------ 430 (876)
T 1qgr_A 375 IKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAW------------------------ 430 (876)
T ss_dssp TTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHH------------------------
T ss_pred ccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH------------------------
Confidence 777889999999999999998777 5578999999999999998776655433322
Q ss_pred HHHHHHHHHhhc-----ChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhc--------------cCccccHHH
Q 003195 339 MWDTLDLCINVV-----DTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIG--------------MDIKPYTSM 399 (840)
Q Consensus 339 l~eal~~~~~~~-----d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~--------------~~~~p~~~~ 399 (840)
+++.+.... ..+.++.++|.+...+++. ..+|..++.++..++..++ ..+.||.+.
T Consensus 431 ---~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 505 (876)
T 1qgr_A 431 ---TVGRICELLPEAAINDVYLAPLLQCLIEGLSAE--PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFEL 505 (876)
T ss_dssp ---HHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHH
T ss_pred ---HHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHH
Confidence 333333332 2345677888888887663 4567788888888887765 347889888
Q ss_pred HHHHHHHhHhhcC---cHHHHHHHHHHHHHhhh-----------------------------------------------
Q 003195 400 LLRLLFPVVKEEK---SAAAKRAFASACASVLK----------------------------------------------- 429 (840)
Q Consensus 400 lL~~Ll~~l~~d~---~~~Vr~~a~~Alg~l~~----------------------------------------------- 429 (840)
+++.++..+ .+. +..+|..+..+++.+++
T Consensus 506 il~~L~~~l-~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~ 584 (876)
T 1qgr_A 506 IVQKLLETT-DRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLL 584 (876)
T ss_dssp HHHHHHHHT-TSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHH
Confidence 888888887 332 23455555555554444
Q ss_pred ---------cCCHHHHHHH----HHHHHHhhcCC---hhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCC-ch
Q 003195 430 ---------YATPSQAQKL----IEETAALHIDD---KNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFED-DK 492 (840)
Q Consensus 430 ---------~~~~~~~~~l----i~~l~~~~~~d---~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~-d~ 492 (840)
..+.+.+..+ ++.+.+.+... ...|..+..+++.++...+..|.+|++.++|.++....+. ++
T Consensus 585 ~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 664 (876)
T 1qgr_A 585 CATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEY 664 (876)
T ss_dssp HHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchH
Confidence 3331122222 22333333221 2567888899999999888899999999999888776665 77
Q ss_pred HHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcC--CCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcC
Q 003195 493 YVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIAS--SSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVP 570 (840)
Q Consensus 493 ~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d--~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~ 570 (840)
++|..+...+..++...+..+.+|++.+++.+.+.+.+ .+.++|..+..++|.++...|+.+.+|++.++|.|.+.+.
T Consensus 665 ~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~ 744 (876)
T 1qgr_A 665 QVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQ 744 (876)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHh
Confidence 89988777777776655567889999999999999987 4688999999999999999999999999999999999997
Q ss_pred CCC-----------chhHHHHHHHHHHHHHhccccc------ccCCCCchHHHHHHHHHHHhhc--CHHHHHHHHHHHHH
Q 003195 571 GRL-----------WEGKDALLYAIGSISTSCHKDI------SAEDPTTPFAIVDMVSSACRKK--IKKYREAAFSCLEQ 631 (840)
Q Consensus 571 ~r~-----------~~~Ke~vl~aL~~l~~~~~~~~------~~~~~~~~~~i~~~l~~~~~~~--~~~~R~~Al~~L~~ 631 (840)
.+. .+.|+.++.++..++...+... .....+|++.+++.+.+.+.++ +..+|..|+.+||.
T Consensus 745 ~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~ 824 (876)
T 1qgr_A 745 AQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGD 824 (876)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHH
T ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 663 2679999999999998876421 0123478999998887777666 78999999999999
Q ss_pred HHHHcCCcch-----HHhHHHHHH
Q 003195 632 VIKAFRDPKF-----FNIIFPLLF 650 (840)
Q Consensus 632 l~~~~~~~~l-----~~~v~~i~~ 650 (840)
++..++++.+ ..++.+++.
T Consensus 825 l~~~~~~~~~~~~~~~~~i~~ll~ 848 (876)
T 1qgr_A 825 LCTAFGKDVLKLVEARPMIHELLT 848 (876)
T ss_dssp HHHHHCTHHHHHHHTSHHHHHHHH
T ss_pred HHHHhCcHHHHHHHhcHHHHHHHH
Confidence 9999976233 245566666
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.97 E-value=1.4e-27 Score=281.40 Aligned_cols=509 Identities=12% Similarity=0.076 Sum_probs=377.9
Q ss_pred HHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHH
Q 003195 76 IYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHL 155 (840)
Q Consensus 76 v~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~ 155 (840)
+..++....+. +|..|+.|+.+++.++...+. +.....++|.|.... |+++.||+++..+++.+..... -..+.
T Consensus 12 i~~l~~~l~s~-~~~~R~~A~~~l~~i~~~~~~--~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~--~~~~~ 85 (588)
T 1b3u_A 12 IAVLIDELRNE-DVQLRLNSIKKLSTIALALGV--ERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVG--GPEYV 85 (588)
T ss_dssp HHHHHHHTTCS-CHHHHHHHHHTHHHHHHHSCH--HHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGT--SGGGG
T ss_pred HHHHHHHhhcc-cHHHHHHHHHhHHHHHHHhCH--HHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccC--cHHHH
Confidence 44444444443 588899999999888765432 123457889887766 9999999999988887764210 12356
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhh
Q 003195 156 DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCD 235 (840)
Q Consensus 156 ~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~ 235 (840)
..+++.|...+.++++.||+.++.++..+....+.+.+.++ +++.+.+...+....+|.+|..++..+.. .+
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~---l~~~l~~l~~~~~~~~R~~a~~~l~~~~~----~~- 157 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH---FVPLVKRLAGGDWFTSRTSACGLFSVCYP----RV- 157 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHT---HHHHHHHHHTCSSHHHHHHHGGGHHHHTT----TS-
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHH---HHHHHHHHhcCCCcHHHHHHHHHHHHHHH----hc-
Confidence 66777777777888999999999999999987776555554 34444555677788999998776665521 11
Q ss_pred ccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHh
Q 003195 236 VTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELH 315 (840)
Q Consensus 236 ~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~ 315 (840)
.....+.++|.+.. .+.+++++||..++.+++.+++..|.. .+.+.++|.+...+.+.++.+
T Consensus 158 --------~~~~~~~l~~~l~~-l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~v------- 219 (588)
T 1b3u_A 158 --------SSAVKAELRQYFRN-LCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSV------- 219 (588)
T ss_dssp --------CHHHHHHHHHHHHH-HHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHH-------
T ss_pred --------CHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHH-------
Confidence 12356778888863 466778999999999999999988764 466888999988877544332
Q ss_pred hhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChh-hHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCcc
Q 003195 316 AANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTE-SLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIK 394 (840)
Q Consensus 316 a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~-~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~ 394 (840)
|..+ .+++..+....+.+ ..+.++|.+.+.+++. .+.+|..++.+++.++...+...
T Consensus 220 --------------r~~a------~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~~- 277 (588)
T 1b3u_A 220 --------------RLLA------VEACVNIAQLLPQEDLEALVMPTLRQAAEDK-SWRVRYMVADKFTELQKAVGPEI- 277 (588)
T ss_dssp --------------HTTH------HHHHHHHHHHSCHHHHHHHTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHCHHH-
T ss_pred --------------HHHH------HHHHHHHHHhCCHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHHhCccc-
Confidence 2221 24455565555543 3456888888888765 78899999999999998876542
Q ss_pred ccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHH-----HHHHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhc
Q 003195 395 PYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS-----QAQKLIEETAALHI-DDKNSQISCAILLKSYSSVA 468 (840)
Q Consensus 395 p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~-----~~~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~ 468 (840)
+.+.+++.++..+ .|.++.||+.++.+++.++...+.+ ....+++.+..... .++.+|..++.+++.++...
T Consensus 278 -~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~ 355 (588)
T 1b3u_A 278 -TKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL 355 (588)
T ss_dssp -HHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH
T ss_pred -chhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 5678899999988 7899999999999999999887754 34566666666554 35778999999999988776
Q ss_pred hhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 003195 469 SDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGE 548 (840)
Q Consensus 469 ~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~ 548 (840)
++.. ..+.++|.+.....|++++||......+..+....+. ..+.+.+++.+.+.+.|.+|++|..++.+++.++.
T Consensus 356 ~~~~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~ 431 (588)
T 1b3u_A 356 GKDN--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG 431 (588)
T ss_dssp CHHH--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred hHhH--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 6532 3456888887778888899998766555544432211 23457788888888999999999999999999999
Q ss_pred HhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHH
Q 003195 549 ILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSC 628 (840)
Q Consensus 549 ~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~ 628 (840)
..|..+ +.+.++|.+.+.+.+..+++|+.++.+++.++..++.. .+.+.+++.+.+..++.++.+|..++.+
T Consensus 432 ~~~~~~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~------~~~~~llp~l~~~~~~~~~~~R~~a~~~ 503 (588)
T 1b3u_A 432 QLGVEF--FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE------WAHATIIPKVLAMSGDPNYLHRMTTLFC 503 (588)
T ss_dssp HHCGGG--CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH------HHHHHTHHHHHHTTTCSCHHHHHHHHHH
T ss_pred HcCHHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch------hHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 988754 34679999999999999999999999999999887653 2356778877777778899999999999
Q ss_pred HHHHHHHcCCcchHHhHHHHHHhh
Q 003195 629 LEQVIKAFRDPKFFNIIFPLLFEM 652 (840)
Q Consensus 629 L~~l~~~~~~~~l~~~v~~i~~~l 652 (840)
++.++..++.+.+...+.|.+...
T Consensus 504 l~~l~~~~~~~~~~~~~~~~l~~~ 527 (588)
T 1b3u_A 504 INVLSEVCGQDITTKHMLPTVLRM 527 (588)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHG
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhh
Confidence 999999887644444444444433
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.97 E-value=9.8e-28 Score=282.66 Aligned_cols=531 Identities=13% Similarity=0.120 Sum_probs=393.0
Q ss_pred hHHHHHHHhhhcCC----chHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHH
Q 003195 59 TYKELCNLANEMGQ----PDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQD 134 (840)
Q Consensus 59 tyk~l~~lA~~~g~----p~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~ 134 (840)
+.+.|..++..+|+ ++++..+.... ...+.-|+.++..|+.+.+..+. ..+...++|.|.....|+++.||+
T Consensus 30 A~~~l~~i~~~~~~~~~~~~l~~~L~~~~--d~~~~vr~~~~~~L~~~~~~~~~--~~~~~~ll~~L~~l~~~~~~~vR~ 105 (588)
T 1b3u_A 30 SIKKLSTIALALGVERTRSELLPFLTDTI--YDEDEVLLALAEQLGTFTTLVGG--PEYVHCLLPPLESLATVEETVVRD 105 (588)
T ss_dssp HHHTHHHHHHHSCHHHHHHTHHHHHHHTC--CCCHHHHHHHHHHHTTCSGGGTS--GGGGGGGHHHHHHHTTSSCHHHHH
T ss_pred HHHhHHHHHHHhCHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHHhCchHHHHH
Confidence 33445555666664 34555555544 23467788888888766654322 236778899988888999999999
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHH
Q 003195 135 AMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKET 214 (840)
Q Consensus 135 a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~ 214 (840)
++..++..+....+. ....+.+++.+.....+++|++|.+++..++.+....+. .+.+.+++.+...++|..+.
T Consensus 106 ~a~~~L~~l~~~~~~--~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~----~~~~~l~~~l~~l~~d~~~~ 179 (588)
T 1b3u_A 106 KAVESLRAISHEHSP--SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS----AVKAELRQYFRNLCSDDTPM 179 (588)
T ss_dssp HHHHHHHHHHTTSCH--HHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH----HHHHHHHHHHHHHHTCSCHH
T ss_pred HHHHHHHHHHHHCCH--HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHhCCCCHH
Confidence 999999998875432 112233455555555677899999999999998776542 34567888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHH
Q 003195 215 VRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLV 294 (840)
Q Consensus 215 VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv 294 (840)
||.+|...+..+++.+ . .....+.++|.+.. .+.++++.+|..++.+++.++...++. .+.+.++
T Consensus 180 VR~~a~~~l~~l~~~~----~--------~~~~~~~l~~~l~~-~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~ 244 (588)
T 1b3u_A 180 VRRAAASKLGEFAKVL----E--------LDNVKSEIIPMFSN-LASDEQDSVRLLAVEACVNIAQLLPQE--DLEALVM 244 (588)
T ss_dssp HHHHHHHHHHHHHHTS----C--------HHHHHHTHHHHHHH-HHTCSCHHHHTTHHHHHHHHHHHSCHH--HHHHHTH
T ss_pred HHHHHHHHHHHHHHHh----c--------HHhHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHhCCHH--HHHHHHH
Confidence 9999977776664321 1 22356778888774 456677899999999999999887653 3456677
Q ss_pred HHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhh-HhhHHHHHHHHHhccCCCc
Q 003195 295 SCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTES-LDQLVPHLARLVRSGIGLN 373 (840)
Q Consensus 295 ~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~-l~~lvp~L~~~lk~~~~~~ 373 (840)
|.+.+.+.+..+.+ |..+ .++++.+....+.+. .+.++|.+.+.+++. +..
T Consensus 245 ~~l~~~~~d~~~~v---------------------R~~a------~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~ 296 (588)
T 1b3u_A 245 PTLRQAAEDKSWRV---------------------RYMV------ADKFTELQKAVGPEITKTDLVPAFQNLMKDC-EAE 296 (588)
T ss_dssp HHHHHHHTCSSHHH---------------------HHHH------HHTHHHHHHHHCHHHHHHTHHHHHHHHHTCS-SHH
T ss_pred HHHHHHccCCCHHH---------------------HHHH------HHHHHHHHHHhCcccchhHHHHHHHHHhCCC-cHH
Confidence 87777766543332 2211 233444554444433 467899999998875 677
Q ss_pred hHhHHHHHHHHHHHHhccCcc--ccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHH-HHHHHHHHHhhc-C
Q 003195 374 TRVGVASFISLLVQKIGMDIK--PYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQA-QKLIEETAALHI-D 449 (840)
Q Consensus 374 ~r~~a~~~l~~L~~~~~~~~~--p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~-~~li~~l~~~~~-~ 449 (840)
+|.+|+..++.++..++.... +|.+.+++.+...+ +|.+..||+.++.+++.+....+.+.. ..+++.+...+. +
T Consensus 297 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~ 375 (588)
T 1b3u_A 297 VRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDE 375 (588)
T ss_dssp HHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC
Confidence 899999999999988876644 67889999999888 899999999999999999988776643 455566666554 3
Q ss_pred ChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhc
Q 003195 450 DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIA 529 (840)
Q Consensus 450 d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~ 529 (840)
++++|..+..+++.+....+.. .+.+.++|.+.....|.+..+|..+.+.+..+....+.. .+.+.+++.+.+.+.
T Consensus 376 ~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~ 451 (588)
T 1b3u_A 376 CPEVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLV 451 (588)
T ss_dssp CHHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGG
T ss_pred chHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhc
Confidence 5688999988888887765532 245668888877777877788887666665544322111 245678999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHH
Q 003195 530 SSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDM 609 (840)
Q Consensus 530 d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~ 609 (840)
|+++.||..|+.+++.++...|..+ +++.++|.|.+.+.+.+|..|..++.+++.++..++.. .+.+.+++.
T Consensus 452 d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~------~~~~~~~~~ 523 (588)
T 1b3u_A 452 DHVYAIREAATSNLKKLVEKFGKEW--AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD------ITTKHMLPT 523 (588)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH------HHHHHTHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHH
Confidence 9999999999999999999988753 46889999998888889999999999999999887653 357889999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHcCCcchHHhHHHHHHhhccc
Q 003195 610 VSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGS 655 (840)
Q Consensus 610 l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~~l~~~ 655 (840)
+.+.+++.++.+|..++.+++.+...++.+.+.+.+.|.+..+.++
T Consensus 524 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d 569 (588)
T 1b3u_A 524 VLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQD 569 (588)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTC
T ss_pred HHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCC
Confidence 9999989999999999999999999886544446677777766433
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.88 E-value=5.6e-20 Score=209.52 Aligned_cols=395 Identities=11% Similarity=0.102 Sum_probs=278.1
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003195 160 DDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDD--IKETVRTAGDKLCRSVTSLTIRLCDVT 237 (840)
Q Consensus 160 ~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD--~~~~VR~aA~~~~~~l~~~~ir~~~~~ 237 (840)
..++.++.+++..+|+.|-..|..+-.. -.+..|..++..+.+ ....||..|..+++++.+.--+..+..
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~--------~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~ 75 (462)
T 1ibr_B 4 ITILEKTVSPDRLELEAAQKFLERAAVE--------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ 75 (462)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHH
Confidence 3477778888999999999888775321 123444445554544 468999999888887631000000000
Q ss_pred cc--ccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHh
Q 003195 238 LT--EISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELH 315 (840)
Q Consensus 238 ~~--~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~ 315 (840)
.. -.....+....+-..|+. .+.++...+ ..+..+++.+++..++. ..+|+++|.|++.+.+.
T Consensus 76 ~~~~~~~l~~~~~~~ik~~ll~-~l~~~~~~v-~~~~~~i~~ia~~~~~~--~~w~~ll~~L~~~l~~~----------- 140 (462)
T 1ibr_B 76 YQQRWLAIDANARREVKNYVLQ-TLGTETYRP-SSASQCVAGIACAEIPV--NQWPELIPQLVANVTNP----------- 140 (462)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHH-HTTCCCSSS-CSHHHHHHHHHHHHGGG--TCCTTHHHHHHHHHHCT-----------
T ss_pred HHhhhhcCCHHHHHHHHHHHHH-HhCCCCchh-hHHHHHHHHHHHHhccc--cccHHHHHHHHHHhccC-----------
Confidence 00 000001112222222332 233344455 66777777777665432 24566677666655421
Q ss_pred hhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccC-CCchHhHHHHHHHHHHHHh-ccCc
Q 003195 316 AANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGI-GLNTRVGVASFISLLVQKI-GMDI 393 (840)
Q Consensus 316 a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~-~~~~r~~a~~~l~~L~~~~-~~~~ 393 (840)
. +..+|.+++.++..++... +..+
T Consensus 141 ------------------------------------------------------~~~~~~r~~al~~l~~l~~~~~~~~~ 166 (462)
T 1ibr_B 141 ------------------------------------------------------NSTEHMKESTLEAIGYICQDIDPEQL 166 (462)
T ss_dssp ------------------------------------------------------TCCHHHHHHHHHHHHHHHHHSCGGGT
T ss_pred ------------------------------------------------------CCCHHHHHHHHHHHHHHHHhCCchhh
Confidence 0 2234666777777777766 5667
Q ss_pred cccHHHHHHHHHHhHhhcC--cHHHHHHHHHHHHHhhhcCCHH----HHHHH-HHHHHHhhc-CChhhhHHHHHHHHHHH
Q 003195 394 KPYTSMLLRLLFPVVKEEK--SAAAKRAFASACASVLKYATPS----QAQKL-IEETAALHI-DDKNSQISCAILLKSYS 465 (840)
Q Consensus 394 ~p~~~~lL~~Ll~~l~~d~--~~~Vr~~a~~Alg~l~~~~~~~----~~~~l-i~~l~~~~~-~d~~~r~~~~~~i~ai~ 465 (840)
.+|.+.+++.++..+ .|. +..||..++.+++.++.+..+. ....+ ++.+.+... .|++.|..++.++..++
T Consensus 167 ~~~~~~ll~~l~~~l-~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~ 245 (462)
T 1ibr_B 167 QDKSNEILTAIIQGM-RKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (462)
T ss_dssp GGGHHHHHHHHHHHH-STTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999 666 7999999999999987655422 12233 444443333 46788999999999999
Q ss_pred hhchhhhhhhHh-hHhHHHHHhhcCCchHHHHHHHHHHHHhcCC---------------------ChhhHHhhHHHHHHH
Q 003195 466 SVASDVLSGYHA-VIVPVIFISRFEDDKYVSDLFEELWEENTSG---------------------DRVTLQLYLGEIVSL 523 (840)
Q Consensus 466 ~~~~~~f~~~~~-~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~---------------------~~~~i~~yl~~Il~~ 523 (840)
...++.|.+|+. .++|+++....+.++++|....+.|..++.. ....+++|++.+++.
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~ 325 (462)
T 1ibr_B 246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325 (462)
T ss_dssp HHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHH
Confidence 999998999999 9999888878888889998777777665431 112345678899999
Q ss_pred HHhhhc-------CCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccc
Q 003195 524 ICEGIA-------SSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDIS 596 (840)
Q Consensus 524 l~~~L~-------d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~ 596 (840)
+.+.+. +.+|.+|+.|+.+|+.++..+|+ ..++.++|.+.+.+.+..|..|+.++.+++.++.++....
T Consensus 326 l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~- 401 (462)
T 1ibr_B 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ- 401 (462)
T ss_dssp HHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTT-
T ss_pred HHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHH-
Confidence 888774 35799999999999999999885 4568899999999999999999999999999998775321
Q ss_pred cCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCC
Q 003195 597 AEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRD 638 (840)
Q Consensus 597 ~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~ 638 (840)
..++++.+++.+.+.++++++.+|..|+.+|++++..++.
T Consensus 402 --~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 402 --LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp --TCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 1267889999999999999999999999999999998865
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.83 E-value=8.9e-18 Score=191.27 Aligned_cols=401 Identities=10% Similarity=0.127 Sum_probs=280.3
Q ss_pred HHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCc---------
Q 003195 120 KLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKF--------- 190 (840)
Q Consensus 120 ~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~--------- 190 (840)
.++....+|++.+|+.+...++.+..+ ....++..++. ++.. .+.++.+|+.|+..|.+++.....
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~---~~~~~~~~L~~-il~~-~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVE---NLPTFLVELSR-VLAN-PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHC-TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhh---ChHHHHHHHHH-HHHc-CCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 455566899999999998887775421 12223333322 2222 234689999999999999865321
Q ss_pred -hhhh-HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCc--hhH
Q 003195 191 -DQVG-KHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSK--VDS 266 (840)
Q Consensus 191 -~~l~-~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~--~~e 266 (840)
..+. +....|-..++..+.+..+.| ..+..++..++... - .....+.++|.|++ .+.++ ++.
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~----~--------~~~~w~~ll~~L~~-~l~~~~~~~~ 145 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAE----I--------PVNQWPELIPQLVA-NVTNPNSTEH 145 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHH----G--------GGTCCTTHHHHHHH-HHHCTTCCHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHh----c--------cccccHHHHHHHHH-HhccCCCCHH
Confidence 1111 122334445666677766666 55545555553321 1 11234678888875 35555 788
Q ss_pred HHHHHHHHHHHHHHhh-ccccccchHHHHHHHHHhccCch-hHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHH
Q 003195 267 ISKASIGVVMKLVKGA-GIAIRPHLSDLVSCMLESLSSLE-DQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLD 344 (840)
Q Consensus 267 vr~~al~~L~~la~~~-g~~l~p~lp~Lv~~Ll~~ls~~e-p~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~ 344 (840)
+|..++.+++.+++.. +..+.+|++.+++.+++.+.+.+ ...++ ..+ ..++.
T Consensus 146 ~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr--------------------~~a------~~~l~ 199 (462)
T 1ibr_B 146 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVK--------------------LAA------TNALL 199 (462)
T ss_dssp HHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHH--------------------HHH------HHHHH
T ss_pred HHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHH--------------------HHH------HHHHH
Confidence 9999999999999977 66789999999999999998653 12211 111 12233
Q ss_pred HHHhhcCh----hhH-hhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHH-HHHHHHHHhHhhcCcHHHHH
Q 003195 345 LCINVVDT----ESL-DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTS-MLLRLLFPVVKEEKSAAAKR 418 (840)
Q Consensus 345 ~~~~~~d~----~~l-~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~-~lL~~Ll~~l~~d~~~~Vr~ 418 (840)
.++.++.. ... +.+++.+.+.+.+. +..+|..+++++..++..++..|.+|.+ .+++.++..+ .|.++.||.
T Consensus 200 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~ 277 (462)
T 1ibr_B 200 NSLEFTKANFDKESERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVAL 277 (462)
T ss_dssp HHTTTTHHHHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH-HCSSHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHH
Confidence 33322211 111 23566666655443 5678889999999999999999999999 9999999998 788999999
Q ss_pred HHHHHHHHhhhcC--------------------CH----HHHHHHHHHHHHhhcC--------ChhhhHHHHHHHHHHHh
Q 003195 419 AFASACASVLKYA--------------------TP----SQAQKLIEETAALHID--------DKNSQISCAILLKSYSS 466 (840)
Q Consensus 419 ~a~~Alg~l~~~~--------------------~~----~~~~~li~~l~~~~~~--------d~~~r~~~~~~i~ai~~ 466 (840)
.++..++.+++.. .. ..+..+++.+.+.+.+ +...|.+++.+++.++.
T Consensus 278 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~ 357 (462)
T 1ibr_B 278 QGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT 357 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHH
Confidence 9999888877542 00 1234555555555421 23578999999999998
Q ss_pred hchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCCh-hhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHH
Q 003195 467 VASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDR-VTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICK 545 (840)
Q Consensus 467 ~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~-~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~ 545 (840)
..++ ...+.++|++.....+.+..+|......+..+..++. ..+.++++.+++.+...+.|+++.||..|+.+|+.
T Consensus 358 ~~~~---~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~ 434 (462)
T 1ibr_B 358 CCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGR 434 (462)
T ss_dssp HTTT---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred hccH---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 8774 5667788888777778888899888888888877654 45778899999999999999999999999999999
Q ss_pred HHHHhCcch--hhhHHHHHHHHHHhcC
Q 003195 546 LGEILGESL--SNYHHVLLESIMKEVP 570 (840)
Q Consensus 546 La~~~~~~l--~~~l~~llp~L~~~l~ 570 (840)
++...+..+ .+|++.++|.|.++++
T Consensus 435 ~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 435 ICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp HHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHHhcccccccHHHHHHHHHHHHHHhc
Confidence 999988765 4789999999988764
No 13
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.79 E-value=3e-15 Score=187.21 Aligned_cols=551 Identities=12% Similarity=0.033 Sum_probs=332.7
Q ss_pred HHHHHhhhc--CCchHHHHHHHHhccc--c---chhhhhhHHhHHHHHHHHh------------hhhhchhhhhHHHHHH
Q 003195 62 ELCNLANEM--GQPDLIYKFMDLANYQ--V---SLNSKRGAAFGFSKIAKQA------------GDALKPHLRLLIPKLV 122 (840)
Q Consensus 62 ~l~~lA~~~--g~p~lv~~fm~la~~~--~---~w~sr~gA~~~l~~I~~~~------------~~~l~~~l~~lvP~L~ 122 (840)
.|..++... +||+++..++.+.++. . ....+.++...|..+++.. .+.+..+++.+++.+.
T Consensus 108 ~la~i~~~~~p~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~ 187 (971)
T 2x1g_F 108 SLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVE 187 (971)
T ss_dssp HHHHHHHHTTCC------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHccccccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344544443 6999999999886542 1 1235566777778887642 1334445566666665
Q ss_pred hhcCCC-CH-------hHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHHHhh----------------CCCChhHHHH
Q 003195 123 RFQYDP-DK-------NVQDAMAHIWKSLVA--DPKRTIDEHLDLIFDDLLIQS----------------GSRLWRSREA 176 (840)
Q Consensus 123 ~~~~Dp-~~-------~VR~a~~~iw~~Lv~--d~~~~i~~~~~~Il~~Ll~~l----------------~~~~wrvR~a 176 (840)
.+..++ ++ .++.++..+++..+. ..+.. ....+++.++. + .+.+.++|++
T Consensus 188 ~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (971)
T 2x1g_F 188 RYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAES 263 (971)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHH
T ss_pred HHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHH
Confidence 555432 11 688888888776554 22222 33556666665 4 1135689999
Q ss_pred HHHHHHHHHccCCchhhhHHHHHHHHHHHHHh-------cccc---HHHHHHHHHHHHHHHHHHHHhhhccc-cccchHH
Q 003195 177 SCLSLADIIQGRKFDQVGKHLRRIWTAAFRAM-------DDIK---ETVRTAGDKLCRSVTSLTIRLCDVTL-TEISDAR 245 (840)
Q Consensus 177 ac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~l-------dD~~---~~VR~aA~~~~~~l~~~~ir~~~~~~-~~~~~~~ 245 (840)
||.++.++++....+...+.+..+++.++..+ .+.+ +.+.....+.+..++....+.+.... .......
T Consensus 264 a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 343 (971)
T 2x1g_F 264 CLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELS 343 (971)
T ss_dssp HHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence 99999999987554445556666666655432 2222 13333334444444422111111000 0000122
Q ss_pred hHHHhHHHHHHh----cccCCchhHHHHHHHHHHHHHHHhh------------ccccccchHHHHHHHHHhccCchhHhH
Q 003195 246 QSMDIVLPFLLA----EGILSKVDSISKASIGVVMKLVKGA------------GIAIRPHLSDLVSCMLESLSSLEDQGL 309 (840)
Q Consensus 246 ~~l~~lLP~Ll~----~gL~s~~~evr~~al~~L~~la~~~------------g~~l~p~lp~Lv~~Ll~~ls~~ep~~~ 309 (840)
..+..+++.|+. .|....++++...+++.|..+++.. ...++|+++.+++.++..+.-.+...
T Consensus 344 ~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~- 422 (971)
T 2x1g_F 344 ILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKS- 422 (971)
T ss_dssp HHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTT-
T ss_pred HHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCccc-
Confidence 345566666663 2333456789999999999987622 13467899999999998774221110
Q ss_pred HHHHHhhhhccc-chhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhc----cCCCchHhHHHHHHHH
Q 003195 310 NYIELHAANAGI-QTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRS----GIGLNTRVGVASFISL 384 (840)
Q Consensus 310 ~~l~~~a~~~~~-~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~----~~~~~~r~~a~~~l~~ 384 (840)
+ ...+. +.+.+.+.|..+ .+++..+....+++.++.+++.+.+.+.. +.+|..|.+++-+++.
T Consensus 423 -~-----~~~d~~e~~~f~~~R~~~------~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~ 490 (971)
T 2x1g_F 423 -L-----AKWSSDDLECFRCYRQDI------SDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQS 490 (971)
T ss_dssp -T-----SCSCHHHHHHHHHHHHHH------HHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred -c-----cccCHhHHHHHHHHHHHH------HHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 0 00000 112334455433 46677788777777888888888887754 2478889999999999
Q ss_pred HHHHhccCccccHHHHHHHHHHhHhh-cCcHHHHHHHHHHHHHhhhcCC--HHHHHHHHHHHHHhhcCChhhhHHHHHHH
Q 003195 385 LVQKIGMDIKPYTSMLLRLLFPVVKE-EKSAAAKRAFASACASVLKYAT--PSQAQKLIEETAALHIDDKNSQISCAILL 461 (840)
Q Consensus 385 L~~~~~~~~~p~~~~lL~~Ll~~l~~-d~~~~Vr~~a~~Alg~l~~~~~--~~~~~~li~~l~~~~~~d~~~r~~~~~~i 461 (840)
++..+.....++++.+++ ++..+.. |.++.||..++.++|.+.+... .+.+..+++.+...+ + +.++..++.++
T Consensus 491 iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~-~~v~~~A~~al 567 (971)
T 2x1g_F 491 VAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N-SSMSAQATLGL 567 (971)
T ss_dssp TTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H-SSCHHHHHHHH
T ss_pred HHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C-hHHHHHHHHHH
Confidence 887777666789999998 5566632 5689999999999999987654 334556666666555 3 77889999999
Q ss_pred HHHHhhchhhhhhhHhhHhHHHHHhhcC--CchHHHHHHHHHHHHhcCCC-hhhHHhhHHHH----HHHHHhhhcCC--C
Q 003195 462 KSYSSVASDVLSGYHAVIVPVIFISRFE--DDKYVSDLFEELWEENTSGD-RVTLQLYLGEI----VSLICEGIASS--S 532 (840)
Q Consensus 462 ~ai~~~~~~~f~~~~~~llP~l~~~~~d--~d~~vr~~~~~i~~~~~~~~-~~~i~~yl~~I----l~~l~~~L~d~--s 532 (840)
..+++.++..+.+|++.++..++..... .+.+.+....+....+.... .....+|+..+ ++.+.+.++.. +
T Consensus 568 ~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~ 647 (971)
T 2x1g_F 568 KELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKT 647 (971)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---C
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999988999999988877654443 33455544333333333221 23444555554 44444444433 3
Q ss_pred HHHHHHHHHHHHHHH---HHhCc-------------chhhhHHHHHHHHHHhcCC--CCchhHHHHHHHHHHHHHhcccc
Q 003195 533 WSSKRKSAKAICKLG---EILGE-------------SLSNYHHVLLESIMKEVPG--RLWEGKDALLYAIGSISTSCHKD 594 (840)
Q Consensus 533 ~~vR~~Aa~~L~~La---~~~~~-------------~l~~~l~~llp~L~~~l~~--r~~~~Ke~vl~aL~~l~~~~~~~ 594 (840)
.+-+.....+++.++ ...+. .+.++.+.++|.+...+.. +..+..+.++.+++.++...+..
T Consensus 648 ~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~ 727 (971)
T 2x1g_F 648 PAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSS 727 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhh
Confidence 444555555555554 43332 4566788999998887743 34578899999999999887765
Q ss_pred cccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCc
Q 003195 595 ISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP 639 (840)
Q Consensus 595 ~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~ 639 (840)
+ .|+++.+++.+...+..... ..++.+++.++..++.+
T Consensus 728 ~----~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~ 765 (971)
T 2x1g_F 728 F----QPMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFKD 765 (971)
T ss_dssp -----CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-
T ss_pred c----cccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCC
Confidence 4 38999999999877654322 45889999999988774
No 14
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.78 E-value=4.4e-14 Score=176.47 Aligned_cols=546 Identities=12% Similarity=0.076 Sum_probs=344.7
Q ss_pred HHHHHhhh---cCCchHHHHHHHHhccc----cchhhhhhHHhHHHHHHHHh-------------hhhhchhhhhHHHHH
Q 003195 62 ELCNLANE---MGQPDLIYKFMDLANYQ----VSLNSKRGAAFGFSKIAKQA-------------GDALKPHLRLLIPKL 121 (840)
Q Consensus 62 ~l~~lA~~---~g~p~lv~~fm~la~~~----~~w~sr~gA~~~l~~I~~~~-------------~~~l~~~l~~lvP~L 121 (840)
.|..++.. -+||+++..++.+.+++ ..-..++++..-|..+.+.. .+.+..+++.+++.+
T Consensus 126 ~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll 205 (963)
T 2x19_B 126 ALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLL 205 (963)
T ss_dssp HHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHH
T ss_pred HHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 36899999999987541 01235566777778887643 223455677788877
Q ss_pred HhhcCCCCH--hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHH
Q 003195 122 VRFQYDPDK--NVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRR 199 (840)
Q Consensus 122 ~~~~~Dp~~--~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~ 199 (840)
..+..+++. .++.++..++...+. ...... ....+++.+++.+. +|++|++++.++..++.....+...+++..
T Consensus 206 ~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~-~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~ 281 (963)
T 2x19_B 206 EQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQ-DCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLK 281 (963)
T ss_dssp HHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGG-GTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHH
T ss_pred HHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcc-cchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHH
Confidence 777766543 366666666544332 111111 12556777777774 689999999999999987654455667777
Q ss_pred HHHHHHHHh-------ccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhc----ccCCchhHHH
Q 003195 200 IWTAAFRAM-------DDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAE----GILSKVDSIS 268 (840)
Q Consensus 200 l~~~l~~~l-------dD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~----gL~s~~~evr 268 (840)
+|+.++..+ .+..........+++..++....+.+.... .....+..+++.++.- |.-..++++.
T Consensus 282 l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~----~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~ 357 (963)
T 2x19_B 282 LIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQV----EHWQSFLALVNMIMFCTGIPGHYPVNETTS 357 (963)
T ss_dssp HHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHHHHHTCSSCTTTTCGGG
T ss_pred HHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCc----cchHHHHHHHHHHHHHHcCCCCCCchhhhh
Confidence 777655432 111122222222333333322112221000 0123344556666531 1112345678
Q ss_pred HHHHHHHHHHHHhh-----------ccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcc-cchhhhHHHHHhhccC
Q 003195 269 KASIGVVMKLVKGA-----------GIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAG-IQTEKLENLRISIAKG 336 (840)
Q Consensus 269 ~~al~~L~~la~~~-----------g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~-~~~~~~d~~R~~~~~~ 336 (840)
..+++.|..+++.. ...++|+++++++.++..+.-.+... + .... .+.+.+++.|..
T Consensus 358 ~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~--~-----~~~~~de~~~~~~~r~~---- 426 (963)
T 2x19_B 358 SLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEE--Y-----GFWSSDEKEQFRIYRVD---- 426 (963)
T ss_dssp GGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHH--H-----HTSCHHHHHHHHHHHHH----
T ss_pred hhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCccc--c-----cCCChhHHHHHHHHHHH----
Confidence 88899888888732 23467899999999988775322211 0 0000 011233344443
Q ss_pred CcHHHHHHHHHhhcChhhHhhHHHHHHHHHh---ccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCc
Q 003195 337 SPMWDTLDLCINVVDTESLDQLVPHLARLVR---SGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKS 413 (840)
Q Consensus 337 s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk---~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~ 413 (840)
+.+++..+......+.++.+++.+.+.+. ++.+|..|.+++.+++.++..+.....++++.+++.+. .+ .+.+
T Consensus 427 --~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l-~~~~ 502 (963)
T 2x19_B 427 --ISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RI-SISN 502 (963)
T ss_dssp --HHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GS-CCCS
T ss_pred --HHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hC-CCCc
Confidence 24566777766677777888888877773 33467788899999999988887777889999888544 45 3467
Q ss_pred HHHHHHHHHHHHHhhhcCC--HHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhc--C
Q 003195 414 AAAKRAFASACASVLKYAT--PSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRF--E 489 (840)
Q Consensus 414 ~~Vr~~a~~Alg~l~~~~~--~~~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~--d 489 (840)
+.||.+++.++|...+... .+.+..+++.+...+ .++.++..++.++..+++.+++.+.+|++.++..++.... +
T Consensus 503 ~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~~~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~ 581 (963)
T 2x19_B 503 VQLADTVMFTIGALSEWLADHPVMINSVLPLVLHAL-GNPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQI 581 (963)
T ss_dssp HHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHT-TCGGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCC
Confidence 8999999999999987643 344555566665555 4588899999999999998888899999999887765433 2
Q ss_pred CchHHHHHHHHHHHHhcCCC-hhhHHhhHHHHHHHHHhhhc-----CCCHHHHH---HHHHHHHHHHHHhCcc-------
Q 003195 490 DDKYVSDLFEELWEENTSGD-RVTLQLYLGEIVSLICEGIA-----SSSWSSKR---KSAKAICKLGEILGES------- 553 (840)
Q Consensus 490 ~d~~vr~~~~~i~~~~~~~~-~~~i~~yl~~Il~~l~~~L~-----d~s~~vR~---~Aa~~L~~La~~~~~~------- 553 (840)
.+.+.+..+.+....++... .....+|+..+++.+...+. ..+.+.|. ....+|+.+++.++..
T Consensus 582 ~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~ 661 (963)
T 2x19_B 582 HKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHE 661 (963)
T ss_dssp SCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC----
T ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCccccccc
Confidence 34556665555555555433 36678888888877766553 22555555 4445666777766531
Q ss_pred ---------------hhhhHHHHHHHHHHhcC--CCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhh
Q 003195 554 ---------------LSNYHHVLLESIMKEVP--GRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRK 616 (840)
Q Consensus 554 ---------------l~~~l~~llp~L~~~l~--~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 616 (840)
+.++.+.++|.+.+.+. ..+...++.++.++..++...++.+. |+++.+++.+......
T Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~----~~l~~~~~~l~~~~~~ 737 (963)
T 2x19_B 662 GPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA----PMVPQLCEMLGRMYST 737 (963)
T ss_dssp -----------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG----GGHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc----ccHHHHHHHHHHHHHc
Confidence 34467888888877764 23457899999999999887776543 7899999988876654
Q ss_pred cCHHHHHHHHHHHHHHHHHcCC
Q 003195 617 KIKKYREAAFSCLEQVIKAFRD 638 (840)
Q Consensus 617 ~~~~~R~~Al~~L~~l~~~~~~ 638 (840)
.. -...+.+++.++..++.
T Consensus 738 ~~---~~~~l~l~~~li~~f~~ 756 (963)
T 2x19_B 738 IP---QASALDLTRQLVHIFAH 756 (963)
T ss_dssp SC---CHHHHHHHHHHHHHHTT
T ss_pred CC---ccHHHHHHHHHHHHhCC
Confidence 22 12467778888885544
No 15
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.69 E-value=9.1e-14 Score=173.75 Aligned_cols=498 Identities=9% Similarity=0.036 Sum_probs=316.8
Q ss_pred hhhhhhHHhHHHHHHHHhh-hhhchhhhhHHHHHHhhc-------CCCC---HhHHHHHHHHHHHhccCChHHH------
Q 003195 89 LNSKRGAAFGFSKIAKQAG-DALKPHLRLLIPKLVRFQ-------YDPD---KNVQDAMAHIWKSLVADPKRTI------ 151 (840)
Q Consensus 89 w~sr~gA~~~l~~I~~~~~-~~l~~~l~~lvP~L~~~~-------~Dp~---~~VR~a~~~iw~~Lv~d~~~~i------ 151 (840)
-..|+.|+-+|..|+++.. ....+.+.+++|.++... .+.+ ..+.+.+++++..+.......+
T Consensus 258 ~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 337 (971)
T 2x1g_F 258 NELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITS 337 (971)
T ss_dssp HHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3567888899999998532 223355667777766421 3334 3677778888887764332222
Q ss_pred -----HHHHHHHHHHHHHhhC-----CCChhHHHHHHHHHHHHHcc--------C---CchhhhHHHHHHHHHHHHHhc-
Q 003195 152 -----DEHLDLIFDDLLIQSG-----SRLWRSREASCLSLADIIQG--------R---KFDQVGKHLRRIWTAAFRAMD- 209 (840)
Q Consensus 152 -----~~~~~~Il~~Ll~~l~-----~~~wrvR~aac~Al~~Ll~~--------~---~~~~l~~~L~~l~~~l~~~ld- 209 (840)
..++..+++.++.... ..+.+++..++.....+.+. . ..+.+.+++.++++.++..+.
T Consensus 338 ~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 417 (971)
T 2x1g_F 338 ADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQ 417 (971)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3578888998888653 34678999998877666541 1 123567899999999888772
Q ss_pred --cc-------c-----HHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccC-----CchhHHHHH
Q 003195 210 --DI-------K-----ETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGIL-----SKVDSISKA 270 (840)
Q Consensus 210 --D~-------~-----~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~-----s~~~evr~~ 270 (840)
|. . ...|+++...+..+.. . .+..+++.+++++.+ .+. ..+|..++.
T Consensus 418 p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~----~---------~~~~~l~~~~~~l~~-~l~~~~~~~~~w~~~ea 483 (971)
T 2x1g_F 418 PDEKSLAKWSSDDLECFRCYRQDISDTFMYCYD----V---------LNDYILEILAAMLDE-AIADLQRHPTHWTKLEA 483 (971)
T ss_dssp CCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHT----T---------CTTHHHHHHHHHHHH-HHHHHHHCTTCCHHHHH
T ss_pred CCcccccccCHhHHHHHHHHHHHHHHHHHHHHH----H---------HhHHHHHHHHHHHHH-HHHhccCCCCcHHHHHH
Confidence 11 1 1345555444443321 1 123466666666543 122 256889999
Q ss_pred HHHHHHHHHHhhccccccchHHHHHHHHHhcc-CchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhh
Q 003195 271 SIGVVMKLVKGAGIAIRPHLSDLVSCMLESLS-SLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINV 349 (840)
Q Consensus 271 al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls-~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~ 349 (840)
++-+++.+++.+.....++++.+++.+.+..+ +..|.+..-. ..+++.+..+
T Consensus 484 al~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a---------------------------~~~l~~~~~~ 536 (971)
T 2x1g_F 484 CIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTA---------------------------LETMGSYCNW 536 (971)
T ss_dssp HHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHH---------------------------HHHHHHTHHH
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHH---------------------------HHHHHHHHHH
Confidence 99999999998877778999999994443332 2234332222 2334444444
Q ss_pred cC--hhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhc-CcHHHHHHHHHHHHH
Q 003195 350 VD--TESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEE-KSAAAKRAFASACAS 426 (840)
Q Consensus 350 ~d--~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d-~~~~Vr~~a~~Alg~ 426 (840)
+. .+.++.++|.+...+ + .+++..|+.++..|+..++..+.||.+.++..+...+.+. -...++..+..|++.
T Consensus 537 l~~~~~~l~~vl~~l~~~l-~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~ 612 (971)
T 2x1g_F 537 LMENPAYIPPAINLLVRGL-N---SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGK 612 (971)
T ss_dssp HC----CHHHHHHHHHHHH-H---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHh-C---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHH
Confidence 33 345778888888888 3 4678899999999999999999999999999999999321 247889999999999
Q ss_pred hhhcCCHH----HHHHHHHHHHHhhc---C----ChhhhHHHHHHHHHHH---hhc-------------hhhhhhhHhhH
Q 003195 427 VLKYATPS----QAQKLIEETAALHI---D----DKNSQISCAILLKSYS---SVA-------------SDVLSGYHAVI 479 (840)
Q Consensus 427 l~~~~~~~----~~~~li~~l~~~~~---~----d~~~r~~~~~~i~ai~---~~~-------------~~~f~~~~~~l 479 (840)
++...+.+ .+..+++++++.+. . +++.+.....+++.++ ... ++.+.++.+.+
T Consensus 613 i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i 692 (971)
T 2x1g_F 613 LMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRT 692 (971)
T ss_dssp HHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHH
Confidence 99876633 34556666665442 1 3333433333333332 211 23567788889
Q ss_pred hHHHHHhh--cCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcc--hh
Q 003195 480 VPVIFISR--FEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES--LS 555 (840)
Q Consensus 480 lP~l~~~~--~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~--l~ 555 (840)
+|++.... +..++++.+.+..+|..++...+..+.+|++.+++.+...+..... ..+...++.++..+|.. ..
T Consensus 693 ~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~ 769 (971)
T 2x1g_F 693 MPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCK 769 (971)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchH
Confidence 99876543 3345677776667777765544556789999999999988776432 34567788888877763 33
Q ss_pred ----hhHHHHHHHHHHhcCCC-------CchhHHHHHHHHHHHHHhcccccccCCCCc-hHHHHHHHHHHHhhcCHHHHH
Q 003195 556 ----NYHHVLLESIMKEVPGR-------LWEGKDALLYAIGSISTSCHKDISAEDPTT-PFAIVDMVSSACRKKIKKYRE 623 (840)
Q Consensus 556 ----~~l~~llp~L~~~l~~r-------~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~-~~~i~~~l~~~~~~~~~~~R~ 623 (840)
+++..+.....+.+..- .++.++.-+.-+..++..+...+.. .+. ++.++......++..+....+
T Consensus 770 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~--s~~~l~~i~~~~~~~l~~~~~~~~~ 847 (971)
T 2x1g_F 770 PLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLED--KTLAYDRLVFYAQRGMTLPESGAIR 847 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGC--TTSCHHHHHHHHHHHHTSSCSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcC--CcccHHHHHHHHHHHcCCCCHHHHH
Confidence 33444444444444331 4567777777778888877766542 366 889999888888777777788
Q ss_pred HHHHHHHHHHHHc
Q 003195 624 AAFSCLEQVIKAF 636 (840)
Q Consensus 624 ~Al~~L~~l~~~~ 636 (840)
.++..+..++..-
T Consensus 848 s~~~fl~~~i~~~ 860 (971)
T 2x1g_F 848 NSIQFLTHFVMQS 860 (971)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
Confidence 8889988887764
No 16
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.69 E-value=1.4e-12 Score=162.94 Aligned_cols=526 Identities=9% Similarity=0.015 Sum_probs=333.4
Q ss_pred cchHHHHHHHhhhcCCc-----hHHHHHHHHhccccchhhhhhHHhHHHHHHHHhh-hhhchhhhhHHHHHHhh------
Q 003195 57 LSTYKELCNLANEMGQP-----DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAG-DALKPHLRLLIPKLVRF------ 124 (840)
Q Consensus 57 ~styk~l~~lA~~~g~p-----~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~-~~l~~~l~~lvP~L~~~------ 124 (840)
..+.+++.+... +|.+ .++..+.... ..|..|..|+-+|..|+++.. ....+++..++|.++..
T Consensus 220 ~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l---~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 295 (963)
T 2x19_B 220 QKVLKCFSSWVQ-LEVPLQDCEALIQAAFAAL---QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQ 295 (963)
T ss_dssp HHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHT---TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCcccchHHHHHHHHHh---CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHH
Confidence 346677766655 4442 3444443332 247888999999999987531 22345666666666543
Q ss_pred -cCCCCHhHHHHHHHHHHHhccCChHHH------HHHHHHHHHHHHHhhCC-----CChhHHHHHHHHHHHHHcc-----
Q 003195 125 -QYDPDKNVQDAMAHIWKSLVADPKRTI------DEHLDLIFDDLLIQSGS-----RLWRSREASCLSLADIIQG----- 187 (840)
Q Consensus 125 -~~Dp~~~VR~a~~~iw~~Lv~d~~~~i------~~~~~~Il~~Ll~~l~~-----~~wrvR~aac~Al~~Ll~~----- 187 (840)
..+.+....+..+.++..+.......+ ..++..+++.++....+ .+++++..++.-...+++.
T Consensus 296 ~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~ 375 (963)
T 2x19_B 296 AVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFE 375 (963)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSC
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhh
Confidence 122334555555555555543222222 25677888888876654 3567766655444555441
Q ss_pred -----CCchhhhHHHHHHHHHHHHHhccc------------cH---HHHHHHHHHHHHHHHHHHHhhhccccccchHHhH
Q 003195 188 -----RKFDQVGKHLRRIWTAAFRAMDDI------------KE---TVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQS 247 (840)
Q Consensus 188 -----~~~~~l~~~L~~l~~~l~~~ldD~------------~~---~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~ 247 (840)
.....+.+++.++++.++..|.-+ .+ ..|.++..++..+.... +..+
T Consensus 376 ~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~-------------~~~~ 442 (963)
T 2x19_B 376 AEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEML-------------GAEL 442 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH-------------THHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHc-------------cHHH
Confidence 112346788999998888877311 11 23555555554443321 2345
Q ss_pred HHhHHHHHHhccc----CCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccch
Q 003195 248 MDIVLPFLLAEGI----LSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQT 323 (840)
Q Consensus 248 l~~lLP~Ll~~gL----~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~ 323 (840)
++.+++++.+ .+ .+.+|..++.++.+++.++..+.....++++.+++.+.+. .+..|.+..-.
T Consensus 443 l~~~~~~l~~-~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l-~~~~~~vr~~~----------- 509 (963)
T 2x19_B 443 LSNLYDKLGR-LLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRI-SISNVQLADTV----------- 509 (963)
T ss_dssp HHHHHHHHHH-HHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGS-CCCSHHHHHHH-----------
T ss_pred HHHHHHHHHH-HHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhC-CCCcHHHHHHH-----------
Confidence 5666666542 23 4467899999999999999988777788999988865533 32233322222
Q ss_pred hhhHHHHHhhccCCcHHHHHHHHHhhc--ChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHH
Q 003195 324 EKLENLRISIAKGSPMWDTLDLCINVV--DTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLL 401 (840)
Q Consensus 324 ~~~d~~R~~~~~~s~l~eal~~~~~~~--d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL 401 (840)
+.+++...+++ ..+.++.+++.+.+.+++ .+++..|+..+..++..++..+.||.+.++
T Consensus 510 ----------------~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~---~~V~~~A~~al~~l~~~~~~~l~p~~~~il 570 (963)
T 2x19_B 510 ----------------MFTIGALSEWLADHPVMINSVLPLVLHALGN---PELSVSSVSTLKKICRECKYDLPPYAANIV 570 (963)
T ss_dssp ----------------HHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC---GGGHHHHHHHHHHHHHHTGGGCTTTHHHHH
T ss_pred ----------------HHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 22334333332 235677888888888864 467889999999999999999999999999
Q ss_pred HHHHHhHhh-cCcHHHHHHHHHHHHHhhhcCCHHHHHHH----HHHHHHhhc------CChhhhH---HHHHHHHHHHhh
Q 003195 402 RLLFPVVKE-EKSAAAKRAFASACASVLKYATPSQAQKL----IEETAALHI------DDKNSQI---SCAILLKSYSSV 467 (840)
Q Consensus 402 ~~Ll~~l~~-d~~~~Vr~~a~~Alg~l~~~~~~~~~~~l----i~~l~~~~~------~d~~~r~---~~~~~i~ai~~~ 467 (840)
+.+...+.+ +-+...+..+..|+|.++...+.+....+ ++++.+.+. .+++.+. ....+++.+.+.
T Consensus 571 ~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~ 650 (963)
T 2x19_B 571 AVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTT 650 (963)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999998832 23578899999999999987764444444 444444442 1344443 233445555554
Q ss_pred ch----------------------hhhhhhHhhHhHHHHHhh--cCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHH
Q 003195 468 AS----------------------DVLSGYHAVIVPVIFISR--FEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSL 523 (840)
Q Consensus 468 ~~----------------------~~f~~~~~~llP~l~~~~--~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~ 523 (840)
.+ +.+.++.+.++|.+.... +..+.++.+.+..+|..+....+..+.+|++++++.
T Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~ 730 (963)
T 2x19_B 651 LDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEM 730 (963)
T ss_dssp CCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHH
T ss_pred cCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence 33 224557777888765432 234556777666777776555555678899999888
Q ss_pred HHhhhcC-CCHHHHHHHHHHHHHHHHHh--CcchhhhHHHHHHHHHHh----cC---CCCchhHHHHHHHHHHHHHhccc
Q 003195 524 ICEGIAS-SSWSSKRKSAKAICKLGEIL--GESLSNYHHVLLESIMKE----VP---GRLWEGKDALLYAIGSISTSCHK 593 (840)
Q Consensus 524 l~~~L~d-~s~~vR~~Aa~~L~~La~~~--~~~l~~~l~~llp~L~~~----l~---~r~~~~Ke~vl~aL~~l~~~~~~ 593 (840)
+...... +. .....+++.++..+ ++.+.+++..++..+... +. ....+.+...+..+..++..+..
T Consensus 731 l~~~~~~~~~----~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~ 806 (963)
T 2x19_B 731 LGRMYSTIPQ----ASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPD 806 (963)
T ss_dssp HHHHHHHSCC----HHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHcCCc----cHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcH
Confidence 7765543 22 23446677777733 333445554444443333 22 22478899999999999998887
Q ss_pred ccccCCCCc-hHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcC
Q 003195 594 DISAEDPTT-PFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFR 637 (840)
Q Consensus 594 ~~~~~~~~~-~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~ 637 (840)
.+.. .+. .+.++..+...++..+..+.+.|+..+.+++...+
T Consensus 807 ~~~~--~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~ 849 (963)
T 2x19_B 807 LFLC--ERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCG 849 (963)
T ss_dssp GGGC--TTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTT
T ss_pred HHcC--CcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC
Confidence 6542 355 89999999999988899999999999999997654
No 17
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.68 E-value=6.3e-14 Score=158.95 Aligned_cols=400 Identities=9% Similarity=0.026 Sum_probs=271.2
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHH--HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHhhh
Q 003195 159 FDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLR--RIWTAAFRAMDDI-KETVRTAGDKLCRSVTSLTIRLCD 235 (840)
Q Consensus 159 l~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~--~l~~~l~~~ldD~-~~~VR~aA~~~~~~l~~~~ir~~~ 235 (840)
++.++..+.+.+..+|+.|+.+|..++.....+.....+. .+++.+.+.+.+. .+.||..|..++..++.. +
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~-----~ 96 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASG-----N 96 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSS-----C
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC-----C
Confidence 7778888888899999999999999876322222344443 5788888888887 789999887776665320 0
Q ss_pred ccccccchHHhHH-HhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHH
Q 003195 236 VTLTEISDARQSM-DIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIEL 314 (840)
Q Consensus 236 ~~~~~~~~~~~~l-~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~ 314 (840)
+ .....++ ..++|.|++ -+.++++++|..++.+|++++..... .+.. +++
T Consensus 97 ~-----~~~~~~~~~~~i~~L~~-lL~~~~~~vr~~a~~~L~~l~~~~~~-~~~~-------~~~--------------- 147 (450)
T 2jdq_A 97 S-----LQTRIVIQAGAVPIFIE-LLSSEFEDVQEQAVWALGNIAGDSTM-CRDY-------VLD--------------- 147 (450)
T ss_dssp H-----HHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTTCHH-HHHH-------HHH---------------
T ss_pred H-----HHHHHHHhCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHccCCHH-HHHH-------HHH---------------
Confidence 0 0011121 346787774 36667889999999999998853211 0000 000
Q ss_pred hhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHh-ccCc
Q 003195 315 HAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKI-GMDI 393 (840)
Q Consensus 315 ~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~-~~~~ 393 (840)
..++|.+.+.+++..+..+|..++.+++.|+... +..-
T Consensus 148 -----------------------------------------~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 186 (450)
T 2jdq_A 148 -----------------------------------------CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPE 186 (450)
T ss_dssp -----------------------------------------TTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred -----------------------------------------CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCC
Confidence 0123445555553334556777888888777543 2222
Q ss_pred cccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHH--HH--HHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhc
Q 003195 394 KPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS--QA--QKLIEETAALHI-DDKNSQISCAILLKSYSSVA 468 (840)
Q Consensus 394 ~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~--~~--~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~ 468 (840)
..+...+++.++..+ .+.+..++..++.+++++....++. .+ ...++.+.+.+. .++..|..++.+++.++...
T Consensus 187 ~~~~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 265 (450)
T 2jdq_A 187 FAKVSPCLNVLSWLL-FVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGD 265 (450)
T ss_dssp GGGTGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCC
Confidence 234467888888888 6788999999999999998654321 11 235677777664 46778999999999998765
Q ss_pred hhhhhhhHh-hHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 003195 469 SDVLSGYHA-VIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYL-GEIVSLICEGIASSSWSSKRKSAKAICKL 546 (840)
Q Consensus 469 ~~~f~~~~~-~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl-~~Il~~l~~~L~d~s~~vR~~Aa~~L~~L 546 (840)
++......+ .++|.+.....++++.+|.....++..+..+......... ..+++.+.+.+.+.++++|+.|+.+|+.+
T Consensus 266 ~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l 345 (450)
T 2jdq_A 266 DIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNA 345 (450)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 543333222 4777777777778888998777777777766555444444 36888888889999999999999999999
Q ss_pred HHHhC-cchhhhH-HHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccc---cCCCCchHHH-----HHHHHHHHhh
Q 003195 547 GEILG-ESLSNYH-HVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDIS---AEDPTTPFAI-----VDMVSSACRK 616 (840)
Q Consensus 547 a~~~~-~~l~~~l-~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~---~~~~~~~~~i-----~~~l~~~~~~ 616 (840)
+.... +.....+ ..++|.|++.+....+..++.++.+|..++........ ....++...+ ++.+.....+
T Consensus 346 ~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~ 425 (450)
T 2jdq_A 346 TSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSH 425 (450)
T ss_dssp HHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCH
T ss_pred HcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcC
Confidence 97633 2222222 35889999999888899999999999999886543110 0012445555 3456666666
Q ss_pred cCHHHHHHHHHHHHHHHH
Q 003195 617 KIKKYREAAFSCLEQVIK 634 (840)
Q Consensus 617 ~~~~~R~~Al~~L~~l~~ 634 (840)
.++.+|+.|+..+..+..
T Consensus 426 ~~~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 426 ENQEIYQKAFDLIEHYFG 443 (450)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHCC
Confidence 788999999999888763
No 18
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.67 E-value=6.1e-13 Score=165.97 Aligned_cols=535 Identities=10% Similarity=0.056 Sum_probs=313.1
Q ss_pred HHHHHhhh---cCCchHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhh---------hhchhhhhHHHHHH-------
Q 003195 62 ELCNLANE---MGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGD---------ALKPHLRLLIPKLV------- 122 (840)
Q Consensus 62 ~l~~lA~~---~g~p~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~---------~l~~~l~~lvP~L~------- 122 (840)
.|..+|.. -.||+++..++++.+++ +...+.|+...|..|++.... .++..+...+|.++
T Consensus 108 ~ia~ia~~d~p~~Wp~ll~~L~~~l~s~-~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~ 186 (960)
T 1wa5_C 108 AISSIADSDFPDRWPTLLSDLASRLSND-DMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVD 186 (960)
T ss_dssp HHHHHHHHHSTTTCTTHHHHHHTTCCSS-CTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCccchhHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445543 36899999999988654 457788999999999985431 12222334444333
Q ss_pred hhcCCCCH---hHHHH------HHHHHHHhc-cCChHHHHHHHHHHHHHHHHhhCC-----------C----ChhHHHHH
Q 003195 123 RFQYDPDK---NVQDA------MAHIWKSLV-ADPKRTIDEHLDLIFDDLLIQSGS-----------R----LWRSREAS 177 (840)
Q Consensus 123 ~~~~Dp~~---~VR~a------~~~iw~~Lv-~d~~~~i~~~~~~Il~~Ll~~l~~-----------~----~wrvR~aa 177 (840)
.+..++.+ .+|.+ +..++..++ .+.+.....+++..++.+...+.. . .|++|..+
T Consensus 187 ~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~ 266 (960)
T 1wa5_C 187 EQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSI 266 (960)
T ss_dssp HHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHH
Confidence 33455533 24433 455554443 344455666777777765554321 1 17899999
Q ss_pred HHHHHHHHccCCchhhhHHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHH-------------------H-HHHHH
Q 003195 178 CLSLADIIQGRKFDQVGKHLRRIWTAAFRAMD-----DIKETVRTAGDKLCRSV-------------------T-SLTIR 232 (840)
Q Consensus 178 c~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ld-----D~~~~VR~aA~~~~~~l-------------------~-~~~ir 232 (840)
|..+..+.+..+ +.+.+|++.+++..++.+. ...+.++..|...+.++ . .++++
T Consensus 267 ~~~l~~l~~~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~ 345 (960)
T 1wa5_C 267 QELVQLYTTRYE-DVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILP 345 (960)
T ss_dssp HHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHH
Confidence 999888775432 3456666666666666553 22334443333332221 1 11111
Q ss_pred hhh--ccc-----------------c----c-------------cchHHhHHHhHHHHHHhcccC------CchhHHHHH
Q 003195 233 LCD--VTL-----------------T----E-------------ISDARQSMDIVLPFLLAEGIL------SKVDSISKA 270 (840)
Q Consensus 233 ~~~--~~~-----------------~----~-------------~~~~~~~l~~lLP~Ll~~gL~------s~~~evr~~ 270 (840)
... +.. + + ....+.+++.++|++.+ -+. +.+|..|..
T Consensus 346 ~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~-~l~~~~~~~~~~w~~rea 424 (960)
T 1wa5_C 346 NVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKG-FVDQYMSDPSKNWKFKDL 424 (960)
T ss_dssp HHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-HHHHHHC----CHHHHHH
T ss_pred hcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHH-HHHHhccCcchhHHHHHH
Confidence 110 000 0 0 00122355566666543 122 456889999
Q ss_pred HHHHHHHHHHhhc---ccccc--chHHHHHH----HHHhccCc---hhHhHHHHHHhhhhcccchhhhHHHHHhhccCCc
Q 003195 271 SIGVVMKLVKGAG---IAIRP--HLSDLVSC----MLESLSSL---EDQGLNYIELHAANAGIQTEKLENLRISIAKGSP 338 (840)
Q Consensus 271 al~~L~~la~~~g---~~l~p--~lp~Lv~~----Ll~~ls~~---ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~ 338 (840)
++.+++.++.... ....+ ...++.+. ++..+.+. .|-++ ..+
T Consensus 425 al~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr---------------------~~a----- 478 (960)
T 1wa5_C 425 YIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILR---------------------VDA----- 478 (960)
T ss_dssp HHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHH---------------------HHH-----
T ss_pred HHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceeh---------------------HHH-----
Confidence 9999999986421 11111 01123232 33333333 22221 111
Q ss_pred HHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHh-----------ccCccccHHHHHHHHHHh
Q 003195 339 MWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKI-----------GMDIKPYTSMLLRLLFPV 407 (840)
Q Consensus 339 l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~-----------~~~~~p~~~~lL~~Ll~~ 407 (840)
..+++.+...+..+.+..++|.+++.+.++ ..++|..|+.++..|+... ...+.||++.+++.++..
T Consensus 479 -~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~l 556 (960)
T 1wa5_C 479 -IKYIYTFRNQLTKAQLIELMPILATFLQTD-EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIAL 556 (960)
T ss_dssp -HHHHHHTGGGSCHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHH
T ss_pred -HHHHHHHHhhCCHHHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHH
Confidence 234555555556667888999999888765 5678899999999888632 356889999999999999
Q ss_pred Hhhc----CcHHHHHHHHHHHHHhhhcCCHH---HHHHHHHHHHHhhc------CChhhhHHHHHHHHHHHhh-chhhhh
Q 003195 408 VKEE----KSAAAKRAFASACASVLKYATPS---QAQKLIEETAALHI------DDKNSQISCAILLKSYSSV-ASDVLS 473 (840)
Q Consensus 408 l~~d----~~~~Vr~~a~~Alg~l~~~~~~~---~~~~li~~l~~~~~------~d~~~r~~~~~~i~ai~~~-~~~~f~ 473 (840)
+... ........+..+++.++...+++ .+..+++.+.+.+. +|...+..+..+++.+++. .++.+.
T Consensus 557 l~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~ 636 (960)
T 1wa5_C 557 ILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP 636 (960)
T ss_dssp HHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH
T ss_pred HHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH
Confidence 8322 00113356777888877665532 23344444444432 2334555567888888776 456788
Q ss_pred hhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHH--hhhcCCCHHHHHHHHHHHHHHHHHhC
Q 003195 474 GYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLIC--EGIASSSWSSKRKSAKAICKLGEILG 551 (840)
Q Consensus 474 ~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~--~~L~d~s~~vR~~Aa~~L~~La~~~~ 551 (840)
.+.+.++|.+......+..+..+.+.+++..+.... ..+.+|+..+++.+. ..+.... .-.....+|...+...+
T Consensus 637 ~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~~~~~~~ 713 (960)
T 1wa5_C 637 LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWELKG--NIPAVTRLLKSFIKTDS 713 (960)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGCCTT--THHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHhcCCC--CchhHHHHHHHHHHhCh
Confidence 888889998765443322233332333333222111 245678888888887 6665543 22344556666666555
Q ss_pred cchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccc-cccCCCCchHHHHHHHHHHHhhc-CHHHHHHHHHHH
Q 003195 552 ESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKD-ISAEDPTTPFAIVDMVSSACRKK-IKKYREAAFSCL 629 (840)
Q Consensus 552 ~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~-~~~~~~~~~~~i~~~l~~~~~~~-~~~~R~~Al~~L 629 (840)
+.+.+ ++.++..+.+.+..+.. ++.++..++.++..++.. +. ||++.+++.+...+... ..++++..+..+
T Consensus 714 ~~~~~-~~~~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~----~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~ 786 (960)
T 1wa5_C 714 SIFPD-LVPVLGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLR----PYIKQIAVLLLQRLQNSKTERYVKKLTVFF 786 (960)
T ss_dssp GGCSC-SHHHHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHG----GGHHHHHHHHHHGGGSSCCHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHH----HHHHHHHHHHHHHHhhCCcHhHHHHHHHHH
Confidence 55443 35566666666666653 478899999999988876 43 89999999999877543 578887877777
Q ss_pred HHHHHHcC
Q 003195 630 EQVIKAFR 637 (840)
Q Consensus 630 ~~l~~~~~ 637 (840)
..++..++
T Consensus 787 ~~~~~~~~ 794 (960)
T 1wa5_C 787 GLISNKLG 794 (960)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHcC
Confidence 77775554
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.65 E-value=3.3e-14 Score=161.30 Aligned_cols=393 Identities=10% Similarity=0.043 Sum_probs=248.9
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHHHhcc-CChHHHHHHHH--HHHHHHHHhhCCC-ChhHHHHHHHHHHHHHccCCchhh
Q 003195 118 IPKLVRFQYDPDKNVQDAMAHIWKSLVA-DPKRTIDEHLD--LIFDDLLIQSGSR-LWRSREASCLSLADIIQGRKFDQV 193 (840)
Q Consensus 118 vP~L~~~~~Dp~~~VR~a~~~iw~~Lv~-d~~~~i~~~~~--~Il~~Ll~~l~~~-~wrvR~aac~Al~~Ll~~~~~~~l 193 (840)
+|.|.....++++.||..+...+..+.. .....++..+. .+++.|+..+.+. ++.+|..++.++..+..+.+. ..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~-~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSL-QT 100 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHH-HH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH-HH
Confidence 7888888899999999999888887643 11112344444 5888888888888 789999999999999875321 11
Q ss_pred hHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHH-HhHHHHHHhcccCC-chhHHHHH
Q 003195 194 GKH-LRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSM-DIVLPFLLAEGILS-KVDSISKA 270 (840)
Q Consensus 194 ~~~-L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l-~~lLP~Ll~~gL~s-~~~evr~~ 270 (840)
... -...++.+++.+.+..+.||+.|..++..++... . .....++ ..++|.|+. -+.+ ++.++|..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~----~------~~~~~~~~~~~i~~L~~-~l~~~~~~~v~~~ 169 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDS----T------MCRDYVLDCNILPPLLQ-LFSKQNRLTMTRN 169 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC----H------HHHHHHHHTTCHHHHHH-HTTSCCCHHHHHH
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCC----H------HHHHHHHHCCCHHHHHH-HhcCCCCHHHHHH
Confidence 111 1358888999999999999999877776664210 0 0011122 245676663 2443 57899999
Q ss_pred HHHHHHHHHHhh-ccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhh
Q 003195 271 SIGVVMKLVKGA-GIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINV 349 (840)
Q Consensus 271 al~~L~~la~~~-g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~ 349 (840)
++.+|++++... ...-......++|.|++.+.+..+.++.... .++..+...
T Consensus 170 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~---------------------------~~L~~l~~~ 222 (450)
T 2jdq_A 170 AVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADAC---------------------------WALSYLSDG 222 (450)
T ss_dssp HHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHH---------------------------HHHHHHTSS
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHH---------------------------HHHHHHHCC
Confidence 999999999754 2222234466778888777644332211111 111111110
Q ss_pred cChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhh
Q 003195 350 VDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLK 429 (840)
Q Consensus 350 ~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~ 429 (840)
. + .. ...+ ....+++.++..+ .+.+..||..++.+++.+..
T Consensus 223 ~---------~-------------~~---~~~~-------------~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~ 263 (450)
T 2jdq_A 223 P---------N-------------DK---IQAV-------------IDAGVCRRLVELL-MHNDYKVVSPALRAVGNIVT 263 (450)
T ss_dssp S---------H-------------HH---HHHH-------------HHTTTHHHHHHHT-TCSCHHHHHHHHHHHHHHTT
T ss_pred C---------c-------------HH---HHHH-------------HHcCcHHHHHHHH-CCCchhHHHHHHHHHHHHhh
Confidence 0 0 00 0000 0112455666666 67889999999999999986
Q ss_pred cCCHHH--H--HHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhchhhhhhhH-hhHhHHHHHhhcCCchHHHHHHHHHHH
Q 003195 430 YATPSQ--A--QKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYH-AVIVPVIFISRFEDDKYVSDLFEELWE 503 (840)
Q Consensus 430 ~~~~~~--~--~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~-~~llP~l~~~~~d~d~~vr~~~~~i~~ 503 (840)
..+... + ...++.+.+.+. .++..|..++.+++.++....+...... ..++|.++....++++++|.....++.
T Consensus 264 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~ 343 (450)
T 2jdq_A 264 GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAIT 343 (450)
T ss_dssp SCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 543221 1 135677777664 4577899999999999875555444444 357887777667778888877666655
Q ss_pred HhcCC-ChhhHHhhH-HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCc-------chhhhHHHH-----HHHHHHhc
Q 003195 504 ENTSG-DRVTLQLYL-GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE-------SLSNYHHVL-----LESIMKEV 569 (840)
Q Consensus 504 ~~~~~-~~~~i~~yl-~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~-------~l~~~l~~l-----lp~L~~~l 569 (840)
.+..+ .+..++..+ ..+++.+.+.+.+.++++|..|..+|+.++...+. .+.+|...+ ++.|..-.
T Consensus 344 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~ 423 (450)
T 2jdq_A 344 NATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQ 423 (450)
T ss_dssp HHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHH
Confidence 55443 223333333 35888999999999999999999999999975432 123444444 34454444
Q ss_pred CCCCchhHHHHHHHHHHHH
Q 003195 570 PGRLWEGKDALLYAIGSIS 588 (840)
Q Consensus 570 ~~r~~~~Ke~vl~aL~~l~ 588 (840)
...+.++++.++.++..+.
T Consensus 424 ~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 424 SHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHC
Confidence 4444556666666555554
No 20
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.64 E-value=8.6e-14 Score=164.15 Aligned_cols=406 Identities=9% Similarity=0.055 Sum_probs=274.0
Q ss_pred hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhh
Q 003195 115 RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVG 194 (840)
Q Consensus 115 ~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~ 194 (840)
..++|.+.+.+.++++.+|+...-.|..+.... .+....+.+.+.+.+.|+++-+|..|..+++.+. .++
T Consensus 48 ~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~----~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~-- 117 (591)
T 2vgl_B 48 SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ----PDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR----VDK-- 117 (591)
T ss_dssp GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS----HHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC----SGG--
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC----chHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----hHH--
Confidence 345677777889999999999988888776422 2233445677888899999999999988887763 223
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHH
Q 003195 195 KHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGV 274 (840)
Q Consensus 195 ~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~ 274 (840)
..+.+++.+.+++.|.++.||+.|..++..+.. . .+. .... ..++|.|.. -+.+++..|+..|+.+
T Consensus 118 -~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~----~-~p~-----~~~~--~~~~~~l~~-lL~d~d~~V~~~A~~a 183 (591)
T 2vgl_B 118 -ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHD----I-NAQ-----MVED--QGFLDSLRD-LIADSNPMVVANAVAA 183 (591)
T ss_dssp -GHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH----S-SCC-----CHHH--HHHHHHHHH-TTSCSCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh----h-Chh-----hccc--ccHHHHHHH-HhCCCChhHHHHHHHH
Confidence 344667778888999999999998777665532 1 111 0110 246676653 4666778999999999
Q ss_pred HHHHHHhhccc-cccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChh
Q 003195 275 VMKLVKGAGIA-IRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTE 353 (840)
Q Consensus 275 L~~la~~~g~~-l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~ 353 (840)
|++++...+.. ..+..+..++.|+..+.+..|+..-
T Consensus 184 L~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~------------------------------------------- 220 (591)
T 2vgl_B 184 LSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQI------------------------------------------- 220 (591)
T ss_dssp HHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHH-------------------------------------------
T ss_pred HHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHH-------------------------------------------
Confidence 99998765433 3445566666666655433332210
Q ss_pred hHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcC--
Q 003195 354 SLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYA-- 431 (840)
Q Consensus 354 ~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~-- 431 (840)
..++++ .+++..-.+....+++.+.+.+ ++.+++|+-+++.++.++....
T Consensus 221 -----------------------~il~~l----~~l~~~~~~~~~~~l~~l~~~l-~~~~~~V~~ea~~~i~~l~~~~~~ 272 (591)
T 2vgl_B 221 -----------------------FILDCL----SNYNPKDDREAQSICERVTPRL-SHANSAVVLSAVKVLMKFLELLPK 272 (591)
T ss_dssp -----------------------HHHHHH----HTSCCCSHHHHHHHHHHHTTCS-CSSTTHHHHHHHHHHHHSCCSCCB
T ss_pred -----------------------HHHHHH----HHhCCCChHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHhhccCC
Confidence 001111 0000000112356677777777 7889999999999999987543
Q ss_pred CHHHH----HHHHHHHHHhhcCChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcC
Q 003195 432 TPSQA----QKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTS 507 (840)
Q Consensus 432 ~~~~~----~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~ 507 (840)
+++.+ .++.+.+......|++.|..+...++.+....++.+.++...|+ ...+++.++|....+++..++.
T Consensus 273 ~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~-----~~~~d~~~Ir~~al~~L~~l~~ 347 (591)
T 2vgl_B 273 DSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFF-----VKYNDPIYVKLEKLDIMIRLAS 347 (591)
T ss_dssp TTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTS-----CCTTSCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhhe-----eccCChHHHHHHHHHHHHHHCC
Confidence 23333 34455555555568899999999999999888887777655332 2234447888877788777654
Q ss_pred CChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 003195 508 GDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSI 587 (840)
Q Consensus 508 ~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l 587 (840)
.. .++.|++.+..++.+.++++|+.++.+|+.++.+++. .....++.|.+-+..+...++..++.++..+
T Consensus 348 ~~------nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~----~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~i 417 (591)
T 2vgl_B 348 QA------NIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ----SAERCVSTLLDLIQTKVNYVVQEAIVVIRDI 417 (591)
T ss_dssp SS------THHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hh------hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh----HHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 32 3456778788899999999999999999999987543 3455667777777666667777778899998
Q ss_pred HHhcccccccCCCCchHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHcCC
Q 003195 588 STSCHKDISAEDPTTPFAIVDMVSSACR-KKIKKYREAAFSCLEQVIKAFRD 638 (840)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~R~~Al~~L~~l~~~~~~ 638 (840)
+...+.. .+.++..+.+.+. ...+..|..+++++|++....++
T Consensus 418 i~~~p~~--------~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~ 461 (591)
T 2vgl_B 418 FRKYPNK--------YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN 461 (591)
T ss_dssp HHHSCSS--------CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT
T ss_pred HHHCcch--------HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC
Confidence 8765431 1334444444443 35678999999999999776654
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.61 E-value=2.5e-13 Score=158.02 Aligned_cols=406 Identities=12% Similarity=0.062 Sum_probs=256.4
Q ss_pred hhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCC-hHHHHHHH-HHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHccCCc
Q 003195 114 LRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP-KRTIDEHL-DLIFDDLLIQSGSR-LWRSREASCLSLADIIQGRKF 190 (840)
Q Consensus 114 l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~-~~~i~~~~-~~Il~~Ll~~l~~~-~wrvR~aac~Al~~Ll~~~~~ 190 (840)
+...+|.|+..+.++++.+|..+...+..+.+.. ...++... ..+++.|+..+.++ +|.+|..|+.+|+++..+.+
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~- 163 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS- 163 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH-
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH-
Confidence 4456888888889999999999988888776431 11222222 34788899999887 89999999999999987532
Q ss_pred hhhhHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHh-HHHhHHHHHHhcccCCchhHH
Q 003195 191 DQVGKHL--RRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQ-SMDIVLPFLLAEGILSKVDSI 267 (840)
Q Consensus 191 ~~l~~~L--~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~-~l~~lLP~Ll~~gL~s~~~ev 267 (840)
.....+ ...++.+++.+.+..+.||..|..++..++... + ..... .-..++|.|+. -+.+.+.++
T Consensus 164 -~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~----~------~~~~~~~~~~~l~~L~~-ll~~~~~~v 231 (530)
T 1wa5_B 164 -AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS----T------DYRDYVLQCNAMEPILG-LFNSNKPSL 231 (530)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTC----H------HHHHHHHHTTCHHHHHH-GGGSCCHHH
T ss_pred -HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC----c------cchHHHHHcCcHHHHHH-HhccCCHHH
Confidence 122222 356788888888899999999877776664210 0 00111 11246777764 244567889
Q ss_pred HHHHHHHHHHHHHhhcc-ccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHH
Q 003195 268 SKASIGVVMKLVKGAGI-AIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLC 346 (840)
Q Consensus 268 r~~al~~L~~la~~~g~-~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~ 346 (840)
+..++.+|.+++...++ .-......++|.|+..+.+..+
T Consensus 232 ~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~---------------------------------------- 271 (530)
T 1wa5_B 232 IRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT---------------------------------------- 271 (530)
T ss_dssp HHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCH----------------------------------------
T ss_pred HHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCH----------------------------------------
Confidence 99999999999965422 1122334455555555543322
Q ss_pred HhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccH-HHHHHHHHHhHhhcCcHHHHHHHHHHHH
Q 003195 347 INVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYT-SMLLRLLFPVVKEEKSAAAKRAFASACA 425 (840)
Q Consensus 347 ~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~-~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg 425 (840)
.++..++.+|..|+...+..+.... ..+++.++..+ .+.+..||..++.+++
T Consensus 272 --------------------------~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL-~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 272 --------------------------ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL-SHESTLVQTPALRAVG 324 (530)
T ss_dssp --------------------------HHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHH-CCCChhhHHHHHHHHH
Confidence 2233333334333321111111111 13466677777 6778889999988888
Q ss_pred HhhhcCCHHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHh
Q 003195 426 SVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEEN 505 (840)
Q Consensus 426 ~l~~~~~~~~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~ 505 (840)
.++...+ .... .+. -..++|.+.....++++.+|.....++..+
T Consensus 325 ~l~~~~~-------------------~~~~-------~~~----------~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l 368 (530)
T 1wa5_B 325 NIVTGND-------------------LQTQ-------VVI----------NAGVLPALRLLLSSPKENIKKEACWTISNI 368 (530)
T ss_dssp HHTTSCH-------------------HHHH-------HHH----------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHcCCH-------------------HHHH-------HHH----------HcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 7763211 1000 000 012555555556667788888777777777
Q ss_pred cCCChhhHHhhH-HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCc--chhhhH--HHHHHHHHHhcCCCCchhHHHH
Q 003195 506 TSGDRVTLQLYL-GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE--SLSNYH--HVLLESIMKEVPGRLWEGKDAL 580 (840)
Q Consensus 506 ~~~~~~~i~~yl-~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~--~l~~~l--~~llp~L~~~l~~r~~~~Ke~v 580 (840)
..+....+..++ ..+++.+...+.+.++++|..|+.+|+.++...+. ....++ ..++|.|...+....+..++.+
T Consensus 369 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 448 (530)
T 1wa5_B 369 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 448 (530)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence 665544444443 35778888888889999999999999999987543 222232 2488899999988889999999
Q ss_pred HHHHHHHHHhcccccc---cCCCCchHHH-----HHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 003195 581 LYAIGSISTSCHKDIS---AEDPTTPFAI-----VDMVSSACRKKIKKYREAAFSCLEQVIKA 635 (840)
Q Consensus 581 l~aL~~l~~~~~~~~~---~~~~~~~~~i-----~~~l~~~~~~~~~~~R~~Al~~L~~l~~~ 635 (840)
+.+|..++........ ....++...+ ++.+.....+.++.+++.|...+..+...
T Consensus 449 l~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 449 LDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 9999999886543110 0011333333 44555556667889999999888877653
No 22
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.60 E-value=2.3e-12 Score=151.98 Aligned_cols=469 Identities=12% Similarity=0.069 Sum_probs=289.1
Q ss_pred hHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHH
Q 003195 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDE 153 (840)
Q Consensus 74 ~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~ 153 (840)
.+....+.+..++ +..-||.+..+++.+++...+. +.-+++.+..-+.||||.||..+......+.. .+
T Consensus 49 ~~~~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~e~----~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~------~~ 117 (591)
T 2vgl_B 49 SLFPDVVNCMQTD-NLELKKLVYLYLMNYAKSQPDM----AIMAVNSFVKDCEDPNPLIRALAVRTMGCIRV------DK 117 (591)
T ss_dssp GGHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHSHHH----HHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS------GG
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccCchH----HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh------HH
Confidence 4444555544333 4677888888888877754332 24456777788899999999998877776652 22
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh
Q 003195 154 HLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRL 233 (840)
Q Consensus 154 ~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~ 233 (840)
..+.+++.+...+.|+++.||+.|+.|+..+....+ +.+.. ..+++.+...++|..+.||.+|..++..+...
T Consensus 118 ~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p-~~~~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~---- 190 (591)
T 2vgl_B 118 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINA-QMVED--QGFLDSLRDLIADSNPMVVANAVAALSEISES---- 190 (591)
T ss_dssp GHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSC-CCHHH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS----
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhCh-hhccc--ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh----
Confidence 455677788889999999999999999999987432 32322 35778888889999999999987766554210
Q ss_pred hhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHH
Q 003195 234 CDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIE 313 (840)
Q Consensus 234 ~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~ 313 (840)
++...--......+..++..+ .+.++-.+...+.++..++ +.-.+....+++.+...+.+..+.++
T Consensus 191 -~~~~~~~~l~~~~~~~Ll~~l-----~~~~~~~q~~il~~l~~l~----~~~~~~~~~~l~~l~~~l~~~~~~V~---- 256 (591)
T 2vgl_B 191 -HPNSNLLDLNPQNINKLLTAL-----NECTEWGQIFILDCLSNYN----PKDDREAQSICERVTPRLSHANSAVV---- 256 (591)
T ss_dssp -CCSCCSCCCHHHHHHHHHHHH-----HHCCHHHHHHHHHHHHTSC----CCSHHHHHHHHHHHTTCSCSSTTHHH----
T ss_pred -CCCccchhccHHHHHHHHHcC-----CCCCchHHHHHHHHHHHhC----CCChHHHHHHHHHHHHHHcCCChHHH----
Confidence 100000000112333344333 2223334555555443332 21123345667777666665443321
Q ss_pred HhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhh---c--ChhhH----hhHHHHHHHHHhccCCCchHhHHHHHHHH
Q 003195 314 LHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINV---V--DTESL----DQLVPHLARLVRSGIGLNTRVGVASFISL 384 (840)
Q Consensus 314 ~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~---~--d~~~l----~~lvp~L~~~lk~~~~~~~r~~a~~~l~~ 384 (840)
.+|+..+... + +.+.+ +.+.+.|..++. .+.++|..+++.+..
T Consensus 257 --------------------------~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~--~d~~vr~~aL~~l~~ 308 (591)
T 2vgl_B 257 --------------------------LSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS--GEPEVQYVALRNINL 308 (591)
T ss_dssp --------------------------HHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT--SCHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHH
Confidence 1222222221 1 12222 345566665443 266789999999999
Q ss_pred HHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc-CChhhhHHHHHHHHH
Q 003195 385 LVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKS 463 (840)
Q Consensus 385 L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~-~d~~~r~~~~~~i~a 463 (840)
++...+..+.++...+ +... +|+ ..||+.+...+..++ +++.+..+++.+.+... .|.+.|..++..++.
T Consensus 309 i~~~~p~~~~~~~~~~----~~~~-~d~-~~Ir~~al~~L~~l~---~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~ 379 (591)
T 2vgl_B 309 IVQKRPEILKQEIKVF----FVKY-NDP-IYVKLEKLDIMIRLA---SQANIAQVLAELKEYATEVDVDFVRKAVRAIGR 379 (591)
T ss_dssp HHHHCCSTTTTCTTTT----SCCT-TSC-HHHHHHHHHHHHHTC---CSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHhh----eecc-CCh-HHHHHHHHHHHHHHC---ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999888887765543 2222 444 999999988877765 44456677777776554 477889999999999
Q ss_pred HHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhc-CCCHHHHHHHHHH
Q 003195 464 YSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIA-SSSWSSKRKSAKA 542 (840)
Q Consensus 464 i~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~-d~s~~vR~~Aa~~ 542 (840)
++...++.+..+++.++.+ ..+..+.++........++....+. . ...+++.+.+.+. +.+..+|..++-+
T Consensus 380 la~~~~~~~~~~v~~Ll~l----l~~~~~~v~~e~i~~l~~ii~~~p~-~---~~~~v~~L~~~l~~~~~~~~~~~~~wi 451 (591)
T 2vgl_B 380 CAIKVEQSAERCVSTLLDL----IQTKVNYVVQEAIVVIRDIFRKYPN-K---YESIIATLCENLDSLDEPDARAAMIWI 451 (591)
T ss_dssp HHTTCHHHHHHHHHHHHHH----HHTCCHHHHHHHHHHHHHHHHHSCS-S---CCTTHHHHHHTTTTCCSHHHHHHHHHH
T ss_pred HHHhChhHHHHHHHHHHHH----HcccchHHHHHHHHHHHHHHHHCcc-h---HHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 9877665555555544443 3455555554322233333221111 0 1234555666665 4568889888888
Q ss_pred HHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHH-hh-cCHH
Q 003195 543 ICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSAC-RK-KIKK 620 (840)
Q Consensus 543 L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~-~~-~~~~ 620 (840)
||..+.... ..+.++..+.+.+.+.+..+|..++.|+..+....+. .....+..+.+.+ .+ .++.
T Consensus 452 lGey~~~~~-----~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~--------~~~~~i~~ll~~~~~d~~d~e 518 (591)
T 2vgl_B 452 VGEYAERID-----NADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPS--------ETQELVQQVLSLATQDSDNPD 518 (591)
T ss_dssp HHTTCTTCT-----THHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCS--------TTHHHHHHHHHHHHTTCCCHH
T ss_pred HHccccccc-----CHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCch--------HHHHHHHHHHHHhhhcCCChH
Confidence 886544332 2467778888888877888999999999988865432 2334444444443 45 5889
Q ss_pred HHHHHHHHHHHH
Q 003195 621 YREAAFSCLEQV 632 (840)
Q Consensus 621 ~R~~Al~~L~~l 632 (840)
+|..|...++-+
T Consensus 519 vrdRA~~y~~ll 530 (591)
T 2vgl_B 519 LRDRGYIYWRLL 530 (591)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHHH
Confidence 999998765443
No 23
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.60 E-value=8.2e-11 Score=146.71 Aligned_cols=496 Identities=9% Similarity=0.037 Sum_probs=301.8
Q ss_pred hhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCCh------H-------HHHHHHHHHHH---HHHHhhCCCC---hhH
Q 003195 113 HLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPK------R-------TIDEHLDLIFD---DLLIQSGSRL---WRS 173 (840)
Q Consensus 113 ~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~------~-------~i~~~~~~Il~---~Ll~~l~~~~---wrv 173 (840)
.-+.++|.|+.....+++..+.++..+...++++.+ . .+..+++.+++ .+...+.+.. ..+
T Consensus 120 ~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~ 199 (960)
T 1wa5_C 120 RWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASL 199 (960)
T ss_dssp TCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHH
T ss_pred chhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 347899999999998898899998888888876321 1 13334443333 2222344432 234
Q ss_pred HH------HHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhcc-----------cc----HHHHHHHHHHHHHHHHHHHH
Q 003195 174 RE------ASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDD-----------IK----ETVRTAGDKLCRSVTSLTIR 232 (840)
Q Consensus 174 R~------aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD-----------~~----~~VR~aA~~~~~~l~~~~ir 232 (840)
|. .++.++..+....-++.+...+...++.+.+++.. .. ..||+.+.+.+..+.. +
T Consensus 200 ~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~---~ 276 (960)
T 1wa5_C 200 NILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTT---R 276 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHH---H
Confidence 43 35555655543322344555666666666665531 11 2456554443333322 1
Q ss_pred hhhccccccchHHhHHHhHHHHHHh----cccCCchhHHHHHHHHHHHHHHHhh--ccccc--cchHHHH-HHHHHhccC
Q 003195 233 LCDVTLTEISDARQSMDIVLPFLLA----EGILSKVDSISKASIGVVMKLVKGA--GIAIR--PHLSDLV-SCMLESLSS 303 (840)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~lLP~Ll~----~gL~s~~~evr~~al~~L~~la~~~--g~~l~--p~lp~Lv-~~Ll~~ls~ 303 (840)
.-+ .....++.++++.++ .+-....++++..+++.|..+++.. ...++ ||++.++ +.++..+.-
T Consensus 277 ~~~-------~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~ 349 (960)
T 1wa5_C 277 YED-------VFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTL 349 (960)
T ss_dssp CHH-------HHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSC
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCC
Confidence 111 123345555555442 1112345789999999999988643 34565 8999999 677766531
Q ss_pred chhH-------hHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhc-----cCC
Q 003195 304 LEDQ-------GLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRS-----GIG 371 (840)
Q Consensus 304 ~ep~-------~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~-----~~~ 371 (840)
.+.+ .-.|+....+ +++.++.|..+ .+.+..+....++.+++.+++.+.+.+.. ..+
T Consensus 350 ~~~d~e~w~~dp~e~i~~d~e-----~~d~~s~R~aa------~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~ 418 (960)
T 1wa5_C 350 REEDVELFEDDPIEYIRRDLE-----GSDTDTRRRAC------TDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKN 418 (960)
T ss_dssp CGGGTTTTTTCHHHHHHHHHH-----C----CHHHHH------HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----C
T ss_pred CHHHHHHHhcCHHHHHHhccC-----cccccCcHHHH------HHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchh
Confidence 1110 1112111100 12223445433 34566677666666777788887777762 236
Q ss_pred CchHhHHHHHHHHHHHHh---ccCccc-----cHHHH-HHHHHHhHhhcC---cHHHHHHHHHHHHHhhhcCCHHHHHHH
Q 003195 372 LNTRVGVASFISLLVQKI---GMDIKP-----YTSML-LRLLFPVVKEEK---SAAAKRAFASACASVLKYATPSQAQKL 439 (840)
Q Consensus 372 ~~~r~~a~~~l~~L~~~~---~~~~~p-----~~~~l-L~~Ll~~l~~d~---~~~Vr~~a~~Alg~l~~~~~~~~~~~l 439 (840)
|..|-+|+.+++.++... ...... ....+ .+.+++.+ .+. ++.||.+++.++|.+....+++....+
T Consensus 419 w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l-~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~ 497 (960)
T 1wa5_C 419 WKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDL-TSNNIPHIILRVDAIKYIYTFRNQLTKAQLIEL 497 (960)
T ss_dssp HHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHH-HCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHh-cCCCCCCceehHHHHHHHHHHHhhCCHHHHHHH
Confidence 888889999999987542 111221 34443 45577777 566 899999999999999988877777788
Q ss_pred HHHHHHhhcC-ChhhhHHHHHHHHHHHhh-----------chhhhhhhHhhHhHHHHHhhcCCc---hH--HHHHHHHHH
Q 003195 440 IEETAALHID-DKNSQISCAILLKSYSSV-----------ASDVLSGYHAVIVPVIFISRFEDD---KY--VSDLFEELW 502 (840)
Q Consensus 440 i~~l~~~~~~-d~~~r~~~~~~i~ai~~~-----------~~~~f~~~~~~llP~l~~~~~d~d---~~--vr~~~~~i~ 502 (840)
++.+.+.+.+ +..+|..++.++..++.. ..+.+.+|++.+++.++....... +. ..+...++.
T Consensus 498 l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al 577 (960)
T 1wa5_C 498 MPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSI 577 (960)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHH
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHH
Confidence 8877776643 456788999999998764 245688999988887766543320 00 111222222
Q ss_pred HHhcCCChhhHHhhHHHHHHHHHhhhc----C-CCHHHHHHHHHHHHHHHHHhC-cchhhhHHHHHHHHHHhcCCCCchh
Q 003195 503 EENTSGDRVTLQLYLGEIVSLICEGIA----S-SSWSSKRKSAKAICKLGEILG-ESLSNYHHVLLESIMKEVPGRLWEG 576 (840)
Q Consensus 503 ~~~~~~~~~~i~~yl~~Il~~l~~~L~----d-~s~~vR~~Aa~~L~~La~~~~-~~l~~~l~~llp~L~~~l~~r~~~~ 576 (840)
..++...+..+.+|.+.+++.+...+. + .+...+.....+|+.++...+ +.+.++.+.++|.+...+.....+-
T Consensus 578 ~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~ 657 (960)
T 1wa5_C 578 FRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEF 657 (960)
T ss_dssp HHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhh
Confidence 232222234567888888777665542 3 366788888999999998744 4567788999999999887655566
Q ss_pred HHHHHHHHHHHHHhcccccccCCCCchHHHHHHHH--HHHhhcCHHHHHHHHHHHHHHHHHcC
Q 003195 577 KDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVS--SACRKKIKKYREAAFSCLEQVIKAFR 637 (840)
Q Consensus 577 Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~--~~~~~~~~~~R~~Al~~L~~l~~~~~ 637 (840)
.+.+++.+..+.... +.+ .+++.++.+.+. ...... .+-.....+|..++...+
T Consensus 658 ~~~~~~i~~~l~~~~-~~~----~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~L~~~~~~~~ 713 (960)
T 1wa5_C 658 IPYVFQIIAFVVEQS-ATI----PESIKPLAQPLLAPNVWELK--GNIPAVTRLLKSFIKTDS 713 (960)
T ss_dssp HHHHHHHHHHHHHHC-SSC----CTTTGGGHHHHTSGGGGCCT--TTHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhc-cCC----CHHHHHHHHHHcCHHHhcCC--CCchhHHHHHHHHHHhCh
Confidence 788898888888765 222 366777777776 444322 466677778888776544
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.58 E-value=2.3e-13 Score=158.45 Aligned_cols=394 Identities=11% Similarity=0.034 Sum_probs=250.7
Q ss_pred hHHHHHHHHhccccchhhhhhHHhHHHHHHHHhh-hhhchhh-hhHHHHHHhhcCCC-CHhHHHHHHHHHHHhccCChHH
Q 003195 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAG-DALKPHL-RLLIPKLVRFQYDP-DKNVQDAMAHIWKSLVADPKRT 150 (840)
Q Consensus 74 ~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~-~~l~~~l-~~lvP~L~~~~~Dp-~~~VR~a~~~iw~~Lv~d~~~~ 150 (840)
..+..++...++. ++..|+.|+.+|..+++... ...+..+ ..++|.|..++.++ ++.||..+..++..+..+.+..
T Consensus 87 ~~i~~lv~~L~s~-~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 87 QELPQMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp CCHHHHHHHHSCS-SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 4577777776654 47888899999988875421 1111111 36899999999998 9999999999999998765433
Q ss_pred HHHHH-HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 003195 151 IDEHL-DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHL--RRIWTAAFRAMDDIKETVRTAGDKLCRSVT 227 (840)
Q Consensus 151 i~~~~-~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L--~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~ 227 (840)
..... ..+++.|+..+.++++.+|+.|+.+|+++....+ .....+ ..+++.+++.+.+....||..|..++..++
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~--~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 243 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST--DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 243 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCc--cchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 33222 3467777777778899999999999999986432 122211 256788888898888999998766555542
Q ss_pred HHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchH-HHHHHHHHhccCchh
Q 003195 228 SLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLS-DLVSCMLESLSSLED 306 (840)
Q Consensus 228 ~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp-~Lv~~Ll~~ls~~ep 306 (840)
. ..++. ........++|.|+. -+.+++++++..++.+|..++..........+. .++
T Consensus 244 ~----~~~~~-----~~~~~~~~~l~~L~~-lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v------------ 301 (530)
T 1wa5_B 244 R----GKKPQ-----PDWSVVSQALPTLAK-LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIP------------ 301 (530)
T ss_dssp C----CSSSC-----CCHHHHGGGHHHHHH-HTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCH------------
T ss_pred C----CCCCC-----CcHHHHHhHHHHHHH-HHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcH------------
Confidence 1 10011 122345667888774 355667899999999999998532211111110 223
Q ss_pred HhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHH
Q 003195 307 QGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLV 386 (840)
Q Consensus 307 ~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~ 386 (840)
|.|++.+++. +..++..|+.+|+.++
T Consensus 302 -----------------------------------------------------~~Lv~lL~~~-~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 302 -----------------------------------------------------KRLVELLSHE-STLVQTPALRAVGNIV 327 (530)
T ss_dssp -----------------------------------------------------HHHHHGGGCS-CHHHHHHHHHHHHHHT
T ss_pred -----------------------------------------------------HHHHHHHCCC-ChhhHHHHHHHHHHHH
Confidence 3333333332 3334555555555554
Q ss_pred HHhccCcccc-HHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHH-----HHHHHHHHhhc-CChhhhHHHHH
Q 003195 387 QKIGMDIKPY-TSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQ-----KLIEETAALHI-DDKNSQISCAI 459 (840)
Q Consensus 387 ~~~~~~~~p~-~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~-----~li~~l~~~~~-~d~~~r~~~~~ 459 (840)
...+...... ...+++.++..+ .+.+..||+.++.+++.+....+ +.+. .+++.+.+.+. +++..|..++.
T Consensus 328 ~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~vr~~A~~aL~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 405 (530)
T 1wa5_B 328 TGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGNT-EQIQAVIDANLIPPLVKLLEVAEYKTKKEACW 405 (530)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHcchHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 3211111111 125677888888 67789999999999999986433 3222 34566766664 57788999999
Q ss_pred HHHHHHhhchh--hhhhhH--hhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChh-------hHHhhHHH-----HHHH
Q 003195 460 LLKSYSSVASD--VLSGYH--AVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRV-------TLQLYLGE-----IVSL 523 (840)
Q Consensus 460 ~i~ai~~~~~~--~f~~~~--~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~-------~i~~yl~~-----Il~~ 523 (840)
+++.++..... ....++ ..++|.+.....+.+++++.....++..+....+. ...+|... .++.
T Consensus 406 aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 485 (530)
T 1wa5_B 406 AISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEK 485 (530)
T ss_dssp HHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHH
Confidence 99999876432 222222 23777777767777888887665555444332211 11223333 3667
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHHHH
Q 003195 524 ICEGIASSSWSSKRKSAKAICKLGE 548 (840)
Q Consensus 524 l~~~L~d~s~~vR~~Aa~~L~~La~ 548 (840)
+...+.+++.++++.|..+|..+..
T Consensus 486 L~~L~~~~~~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 486 IFNCQQNENDKIYEKAYKIIETYFG 510 (530)
T ss_dssp HHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 7788889999999988888876554
No 25
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.57 E-value=1.7e-12 Score=150.80 Aligned_cols=403 Identities=9% Similarity=0.003 Sum_probs=260.5
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhh-HHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHHHHhh
Q 003195 157 LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVG-KHLRRIWTAAFRAMDDIK-ETVRTAGDKLCRSVTSLTIRLC 234 (840)
Q Consensus 157 ~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~-~~L~~l~~~l~~~ldD~~-~~VR~aA~~~~~~l~~~~ir~~ 234 (840)
.-++.|+..+.+.++.+|..|+.+|..++.+...+... -.-..+++.+.+.+.+.. +.+|..|..++..++...
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~---- 149 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT---- 149 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC----
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC----
Confidence 34667888888889999999999999998765412111 122357788888888876 899998866666553210
Q ss_pred hccccccchHHhHH-HhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHH
Q 003195 235 DVTLTEISDARQSM-DIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIE 313 (840)
Q Consensus 235 ~~~~~~~~~~~~~l-~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~ 313 (840)
......++ ...+|.|+. -+.+++.++|..++.+|++++..... .+..+-.
T Consensus 150 ------~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~aL~~l~~~~~~-~~~~i~~--------------------- 200 (528)
T 4b8j_A 150 ------SENTKVVIDHGAVPIFVK-LLGSSSDDVREQAVWALGNVAGDSPK-CRDLVLA--------------------- 200 (528)
T ss_dssp ------HHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHHHTCHH-HHHHHHH---------------------
T ss_pred ------HHHHHHHHhCCcHHHHHH-HhcCCCHHHHHHHHHHHHHHhCCChh-hHHHHHH---------------------
Confidence 00111122 246777764 35667889999999999999853211 1111100
Q ss_pred HhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCc
Q 003195 314 LHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDI 393 (840)
Q Consensus 314 ~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~ 393 (840)
...+|.|++.+++..+..++..++.+|..|+...+..-
T Consensus 201 ------------------------------------------~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~ 238 (528)
T 4b8j_A 201 ------------------------------------------NGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS 238 (528)
T ss_dssp ------------------------------------------TTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCC
T ss_pred ------------------------------------------CCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCc
Confidence 01123333333222233445566666766665432222
Q ss_pred cccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHH--HH--HHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhc
Q 003195 394 KPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS--QA--QKLIEETAALHI-DDKNSQISCAILLKSYSSVA 468 (840)
Q Consensus 394 ~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~--~~--~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~ 468 (840)
.......++.|+..+ .+.+..|+..++.+++++....+.. .+ ...++.+...+. .++..+..++.+++.++...
T Consensus 239 ~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~ 317 (528)
T 4b8j_A 239 FEQTRPALPALARLI-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGD 317 (528)
T ss_dssp HHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCC
Confidence 234456788888888 6788999999999999998553322 11 135677777775 45778888999999998755
Q ss_pred hhhhhhhH-hhHhHHHHHhhcCC-chHHHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHHhhhcCCCHHHHHHHHHHHHH
Q 003195 469 SDVLSGYH-AVIVPVIFISRFED-DKYVSDLFEELWEENTSGDRVTLQLYL-GEIVSLICEGIASSSWSSKRKSAKAICK 545 (840)
Q Consensus 469 ~~~f~~~~-~~llP~l~~~~~d~-d~~vr~~~~~i~~~~~~~~~~~i~~yl-~~Il~~l~~~L~d~s~~vR~~Aa~~L~~ 545 (840)
+....... ..++|.+.....++ ++.++.....++..+..+....+.... ..+++.+.+.+.+.++++|+.|+.+|+.
T Consensus 318 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~n 397 (528)
T 4b8j_A 318 DAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISN 397 (528)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 54433333 33677776666666 788887766666666655443333322 3677888888888899999999999999
Q ss_pred HHHHhCcchhhhH--HHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhccccc--cc-CCCCchHHH-----HHHHHHHHh
Q 003195 546 LGEILGESLSNYH--HVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDI--SA-EDPTTPFAI-----VDMVSSACR 615 (840)
Q Consensus 546 La~~~~~~l~~~l--~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~--~~-~~~~~~~~i-----~~~l~~~~~ 615 (840)
++.........++ ..+++.|...+....+..+..++.+|..++....... +. ...++...+ +..+.....
T Consensus 398 l~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~ 477 (528)
T 4b8j_A 398 ATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQS 477 (528)
T ss_dssp HHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGG
T ss_pred HHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHc
Confidence 9987433333333 3578899999988889999999999999987553210 00 011222222 334555556
Q ss_pred hcCHHHHHHHHHHHHHHHHH
Q 003195 616 KKIKKYREAAFSCLEQVIKA 635 (840)
Q Consensus 616 ~~~~~~R~~Al~~L~~l~~~ 635 (840)
..+..+++.|...+..+...
T Consensus 478 ~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 478 HDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp CSSHHHHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHHHHCCC
Confidence 67899999999998887654
No 26
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.56 E-value=2.5e-12 Score=149.46 Aligned_cols=390 Identities=11% Similarity=0.042 Sum_probs=253.7
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCCh-HHHHHHH-HHHHHHHHHhhCCCC-hhHHHHHHHHHHHHHccCCchh
Q 003195 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPK-RTIDEHL-DLIFDDLLIQSGSRL-WRSREASCLSLADIIQGRKFDQ 192 (840)
Q Consensus 116 ~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~-~~i~~~~-~~Il~~Ll~~l~~~~-wrvR~aac~Al~~Ll~~~~~~~ 192 (840)
.-+|.|+..+.++++.+|..+...+..+.+... ..++... ..+++.|+..+.+.+ +.+|..|+++|+++..+.+ .
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~--~ 151 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTS--E 151 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH--H
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH--H
Confidence 347777777899999999988888877754321 2233222 347788888888876 9999999999999987532 1
Q ss_pred hhHHHH--HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHH-hHHHHHHhccc-CCchhHHH
Q 003195 193 VGKHLR--RIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMD-IVLPFLLAEGI-LSKVDSIS 268 (840)
Q Consensus 193 l~~~L~--~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~-~lLP~Ll~~gL-~s~~~evr 268 (840)
....+. ..++.++..+.+..+.||..|..++..++... + .....++. .++|.|+. -+ .+++..++
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~----~------~~~~~i~~~g~l~~Ll~-lL~~~~~~~v~ 220 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDS----P------KCRDLVLANGALLPLLA-QLNEHTKLSML 220 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTC----H------HHHHHHHHTTCHHHHHH-TCCTTCCHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC----h------hhHHHHHHCCcHHHHHH-HHhcCCCHHHH
Confidence 222222 47888899999999999999877776664210 0 00111221 36777774 35 34678999
Q ss_pred HHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHh
Q 003195 269 KASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCIN 348 (840)
Q Consensus 269 ~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~ 348 (840)
..++.+|.+++......-......++|.|++.+.+..+.+.....+...+ +..
T Consensus 221 ~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~---------------------------l~~ 273 (528)
T 4b8j_A 221 RNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSY---------------------------LSD 273 (528)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHH---------------------------HTS
T ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---------------------------HHc
Confidence 99999999999764333334456788999998887666554433322222 111
Q ss_pred hcChh---hH-hhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCcccc-HHHHHHHHHHhHhhcC-cHHHHHHHHH
Q 003195 349 VVDTE---SL-DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPY-TSMLLRLLFPVVKEEK-SAAAKRAFAS 422 (840)
Q Consensus 349 ~~d~~---~l-~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~-~~~lL~~Ll~~l~~d~-~~~Vr~~a~~ 422 (840)
..+.. .+ ..++|.|++.+++. ...++..|+.+|+.|+.......... ...+++.++..+ .+. +..|++.++.
T Consensus 274 ~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~~v~~~A~~ 351 (528)
T 4b8j_A 274 GTNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLL-TQNLKKSIKKEACW 351 (528)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHH-HSCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHH-cCCCcHHHHHHHHH
Confidence 11000 01 23678888888776 56678899999998875332211111 135688888888 566 8999999999
Q ss_pred HHHHhhhcCCHHHHH-----HHHHHHHHhhc-CChhhhHHHHHHHHHHHhhchhhhhhhH--hhHhHHHHHhhcCCchHH
Q 003195 423 ACASVLKYATPSQAQ-----KLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYH--AVIVPVIFISRFEDDKYV 494 (840)
Q Consensus 423 Alg~l~~~~~~~~~~-----~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~--~~llP~l~~~~~d~d~~v 494 (840)
+++.+... +.+.+. .+++.+.+.+. +++..|..++.+++.++....+....++ ..++|.+.....+.++++
T Consensus 352 ~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v 430 (528)
T 4b8j_A 352 TISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRI 430 (528)
T ss_dssp HHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred HHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHH
Confidence 99999864 333332 34566777664 5778899999999999877433333333 346676666667778888
Q ss_pred HHHHHHHHHHhcCCChh-------hHHhhHHH-----HHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 003195 495 SDLFEELWEENTSGDRV-------TLQLYLGE-----IVSLICEGIASSSWSSKRKSAKAICKLGE 548 (840)
Q Consensus 495 r~~~~~i~~~~~~~~~~-------~i~~yl~~-----Il~~l~~~L~d~s~~vR~~Aa~~L~~La~ 548 (840)
+..+..++..+...... ...+|... .++.+.....+.+.++++.|...|..+..
T Consensus 431 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 431 VTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 77655554444322111 01122222 35667777888999999999999887664
No 27
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.56 E-value=7.2e-11 Score=148.59 Aligned_cols=564 Identities=8% Similarity=0.058 Sum_probs=319.0
Q ss_pred HHHHhhh---cCCchHHHHHHHHhccccchhhhhhHHhHHHHHHHHhh----------------hhhchhhhhHHHHHHh
Q 003195 63 LCNLANE---MGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAG----------------DALKPHLRLLIPKLVR 123 (840)
Q Consensus 63 l~~lA~~---~g~p~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~----------------~~l~~~l~~lvP~L~~ 123 (840)
|..+|.. -.||+++..++.+.+.+ -..++++...|..+.+... +.+..+++++++.++.
T Consensus 124 ia~Ia~~~~p~~Wp~ll~~L~~~~~~~--~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~ 201 (1049)
T 3m1i_C 124 LVQILKQEWPQNWPEFIPELIGSSSSS--VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQ 201 (1049)
T ss_dssp HHHHHHHHTTTTCTTHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccchHHHHHHHHHHccC--hHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 36999999999988633 2456777888888887653 3355667777777776
Q ss_pred hcCC-CCHhHHHHHHHHHHHhccCCh--HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchh---hhHHH
Q 003195 124 FQYD-PDKNVQDAMAHIWKSLVADPK--RTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQ---VGKHL 197 (840)
Q Consensus 124 ~~~D-p~~~VR~a~~~iw~~Lv~d~~--~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~---l~~~L 197 (840)
+..+ +++.++.++.+++...+..-+ .... +.+++.+++.+.+ +..+|.+++.+|..++.....+. +...+
T Consensus 202 ~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~---~~ll~~l~~~~l~-~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~ 277 (1049)
T 3m1i_C 202 VLEQGSSSSLIVATLESLLRYLHWIPYRYIYE---TNILELLSTKFMT-SPDTRAITLKCLTEVSNLKIPQDNDLIKRQT 277 (1049)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHS---SSHHHHHHTHHHH-SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhh---hhHHHHHHHHhCC-CHhHHHHHHHHHHHHHhCCCCcchhhHHHHH
Confidence 6654 467899988888877665322 1111 3455555533322 67899999999999997642221 33333
Q ss_pred HHHHHHHHHHh------------------ccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcc
Q 003195 198 RRIWTAAFRAM------------------DDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEG 259 (840)
Q Consensus 198 ~~l~~~l~~~l------------------dD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~g 259 (840)
..+++..+..+ +|..+.+++...+.+..++....+.++.. ......+..++++++. .
T Consensus 278 ~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~l~~ll~-~ 352 (1049)
T 3m1i_C 278 VLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESD----ESLRELLLNAHQYLIQ-L 352 (1049)
T ss_dssp HHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSC----GGGHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCC----hhhHHHHHHHHHHHHH-H
Confidence 33333332211 23344444444444444444333333321 1124456778888874 2
Q ss_pred cCCchhHHHHHHHHHHHHHHHh------hccccccchHHHHHHHHHhccCchhHhHHHHHHhhhh-------cccchhhh
Q 003195 260 ILSKVDSISKASIGVVMKLVKG------AGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAAN-------AGIQTEKL 326 (840)
Q Consensus 260 L~s~~~evr~~al~~L~~la~~------~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~-------~~~~~~~~ 326 (840)
...++.++...+++.|..+++. ....++|+++.+++.++..+.-.+. . . +..+. +..+.|.+
T Consensus 353 ~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed-~-~---~~~dd~~e~~r~~~~d~d~~ 427 (1049)
T 3m1i_C 353 SKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEE-V-L---VVENDEGEIVREFVKESDTI 427 (1049)
T ss_dssp HTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTT-C-C---EEECTTSCEEECSSCCHHHH
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcc-e-e---eeeCCCCcchHhhhccchHH
Confidence 3345778999999999999882 2345789999999999988753211 0 0 00000 00011111
Q ss_pred HHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhc-cCCCchHhHHHHHHHHHHHHhccCc-cccHHHHHHHH
Q 003195 327 ENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRS-GIGLNTRVGVASFISLLVQKIGMDI-KPYTSMLLRLL 404 (840)
Q Consensus 327 d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~-~~~~~~r~~a~~~l~~L~~~~~~~~-~p~~~~lL~~L 404 (840)
..|.. +.+++..+......+.++.+.+.+.+.+.. ..+|..+.+++-+++.++..++... .++++.+++.+
T Consensus 428 -~~~~~------~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l 500 (1049)
T 3m1i_C 428 -QLYKS------EREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDL 500 (1049)
T ss_dssp -HHHHH------HHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHH
T ss_pred -HHHHH------HHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHH
Confidence 22221 234555555444445666677777776653 3467788899999988765443332 24566777766
Q ss_pred HHhHh----hcCcHHHHHHHHHHHHHhhhcC--CHHHHHHHHHHHHHhhcC-ChhhhHHHHHHHHHHHhhchhhhh----
Q 003195 405 FPVVK----EEKSAAAKRAFASACASVLKYA--TPSQAQKLIEETAALHID-DKNSQISCAILLKSYSSVASDVLS---- 473 (840)
Q Consensus 405 l~~l~----~d~~~~Vr~~a~~Alg~l~~~~--~~~~~~~li~~l~~~~~~-d~~~r~~~~~~i~ai~~~~~~~f~---- 473 (840)
..... +|.++.|+..++.++|+..+.. .++.+..+++.+.+.+.+ ++.++..++.++..++..++..+.
T Consensus 501 ~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~ 580 (1049)
T 3m1i_C 501 LDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQP 580 (1049)
T ss_dssp HHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCT
T ss_pred HHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 65321 1345667767888898777653 334455666666655533 578899999999999998877764
Q ss_pred ----hhHhhHhHHHHHhhcCCch-HHHHHHHHHHHHhcCCC--hhhHHhhHHHHHHHHHhhhc--------C---C-CHH
Q 003195 474 ----GYHAVIVPVIFISRFEDDK-YVSDLFEELWEENTSGD--RVTLQLYLGEIVSLICEGIA--------S---S-SWS 534 (840)
Q Consensus 474 ----~~~~~llP~l~~~~~d~d~-~vr~~~~~i~~~~~~~~--~~~i~~yl~~Il~~l~~~L~--------d---~-s~~ 534 (840)
+|++.++..+.....+.+. +....+ +....++... .....+|+..+++.+...+. + . +.+
T Consensus 581 ~~~~p~~~~il~~l~~~~~~~~~~~~~~~~-eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~ 659 (1049)
T 3m1i_C 581 RESEPFIQTIIRDIQKTTADLQPQQVHTFY-KACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSE 659 (1049)
T ss_dssp TCSSCHHHHHHHTHHHHHTTSCHHHHHHHH-HHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHH
T ss_pred CCCCcHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHH
Confidence 8888887766554444332 332222 2222222222 23466777777666544332 1 0 122
Q ss_pred -HHH--HHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCC-------------C----C---c---hhHHHHHHHHHHHH
Q 003195 535 -SKR--KSAKAICKLGEILGESLSNYHHVLLESIMKEVPG-------------R----L---W---EGKDALLYAIGSIS 588 (840)
Q Consensus 535 -vR~--~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~-------------r----~---~---~~Ke~vl~aL~~l~ 588 (840)
++. ....++..++..+|..+.|++..+++-++..++. . . | ..+..++..+..+.
T Consensus 660 ~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~ 739 (1049)
T 3m1i_C 660 TVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYI 739 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 232 2345788889999999988877666654322211 0 0 0 01222222232222
Q ss_pred HhcccccccCCCCchHHHHHHHHHHHhhcCHHH-HHHHHHHHHHHHHHcCCcchHHhHHHHHHhh
Q 003195 589 TSCHKDISAEDPTTPFAIVDMVSSACRKKIKKY-REAAFSCLEQVIKAFRDPKFFNIIFPLLFEM 652 (840)
Q Consensus 589 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-R~~Al~~L~~l~~~~~~~~l~~~v~~i~~~l 652 (840)
.... .+.....|+++.++..+.....+..... -..++.+++.++..+++ ++...+..++..+
T Consensus 740 ~~~~-~l~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~-~~~~~l~~i~~~l 802 (1049)
T 3m1i_C 740 SKAR-NLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGH-MIPQGVILILQSV 802 (1049)
T ss_dssp HHCS-CHHHHHHHTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGG-GCHHHHHHHHHHH
T ss_pred HhCC-CHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHH-hhhhhHHHHHHHH
Confidence 2211 0000011456677766666543321111 14588999999998874 4444444444433
No 28
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=9.2e-14 Score=144.57 Aligned_cols=200 Identities=11% Similarity=0.087 Sum_probs=160.5
Q ss_pred HHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcC-CCCHhHHHHHHHHHHHhccCChHHHHHHHHH
Q 003195 79 FMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQY-DPDKNVQDAMAHIWKSLVADPKRTIDEHLDL 157 (840)
Q Consensus 79 fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~-Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~ 157 (840)
|..... +.+|..|++|+.+|..+++++++...+.+.++++.|...+. |+|+.||.++..++..|+......+..|+..
T Consensus 20 l~~~l~-s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ 98 (242)
T 2qk2_A 20 FYDKLE-EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASA 98 (242)
T ss_dssp HHHHHT-CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHhhhc-cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334443 34699999999999999998655555667889999988885 9999999999999999997655567889999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003195 158 IFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVT 237 (840)
Q Consensus 158 Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~ 237 (840)
+++.|+..++|+..+||++++.|+..++...+ +..+++.++..++|.++.||..+...+..+. ....+.
T Consensus 99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l----~~~~~~ 167 (242)
T 2qk2_A 99 CVPSLLEKFKEKKPNVVTALREAIDAIYASTS-------LEAQQESIVESLSNKNPSVKSETALFIARAL----TRTQPT 167 (242)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH----TTCCGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHH----HHcCCC
Confidence 99999999999999999999999999987543 4577888888899999999998866665542 111111
Q ss_pred ccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccc-cccchHHHHH
Q 003195 238 LTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIA-IRPHLSDLVS 295 (840)
Q Consensus 238 ~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~-l~p~lp~Lv~ 295 (840)
......++.++|.|.. .+.++.++||..+..+++.++...|.. +.||++.+=+
T Consensus 168 ----~~~~~~l~~l~p~l~~-~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~ 221 (242)
T 2qk2_A 168 ----ALNKKLLKLLTTSLVK-TLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDP 221 (242)
T ss_dssp ----GCCHHHHHHHHHHHHH-HHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCH
T ss_pred ----CccHHHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCH
Confidence 1234678889999874 577788999999999999999999975 8888876533
No 29
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.51 E-value=6.6e-11 Score=148.88 Aligned_cols=435 Identities=11% Similarity=0.114 Sum_probs=266.4
Q ss_pred hchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhcc----CC--hHHHHHHHHHHHH-----------------------
Q 003195 110 LKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVA----DP--KRTIDEHLDLIFD----------------------- 160 (840)
Q Consensus 110 l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~----d~--~~~i~~~~~~Il~----------------------- 160 (840)
+.+++..+++.++.+.++++..|+..+...|..++. .+ ......++..+++
T Consensus 338 ~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~ 417 (1049)
T 3m1i_C 338 LRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIV 417 (1049)
T ss_dssp GHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEE
T ss_pred hHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcch
Confidence 456788899999988888898999988888887764 11 1111222222222
Q ss_pred -------------------------------------HHHHhhC--CCChhHHHHHHHHHHHHHccCCchhhhHHHHHHH
Q 003195 161 -------------------------------------DLLIQSG--SRLWRSREASCLSLADIIQGRKFDQVGKHLRRIW 201 (840)
Q Consensus 161 -------------------------------------~Ll~~l~--~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~ 201 (840)
.+-..+. +.+||.|+++|.|++.+.++...+.-.+++++++
T Consensus 418 r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~ 497 (1049)
T 3m1i_C 418 REFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVI 497 (1049)
T ss_dssp ECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHH
Confidence 2222222 3689999999999999887665443346788999
Q ss_pred HHHHHHhc-----cccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHH
Q 003195 202 TAAFRAMD-----DIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVM 276 (840)
Q Consensus 202 ~~l~~~ld-----D~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~ 276 (840)
+.+....+ |.++.||..+..++..+.+++.+ ....+..+++.|+. ++.+++..||..|+.++.
T Consensus 498 ~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~-----------~~~~l~~vl~~ll~-~l~~~~~~V~~~A~~al~ 565 (1049)
T 3m1i_C 498 KDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKA-----------HWNFLRTVILKLFE-FMHETHEGVQDMACDTFI 565 (1049)
T ss_dssp HHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHH-----------CHHHHHHHHHHHHH-HTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHH
Confidence 98887543 56777776554555555554411 13577888888884 687778999999999999
Q ss_pred HHHHhhccccc--------cchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHh
Q 003195 277 KLVKGAGIAIR--------PHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCIN 348 (840)
Q Consensus 277 ~la~~~g~~l~--------p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~ 348 (840)
++++.++..+. ||++.++..+...+...++.... .+++++..++.
T Consensus 566 ~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~---------------------------~~~eai~~ii~ 618 (1049)
T 3m1i_C 566 KIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVH---------------------------TFYKACGIIIS 618 (1049)
T ss_dssp HHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHH---------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHH---------------------------HHHHHHHHHHH
Confidence 99999887764 99999999999888754432211 13455555555
Q ss_pred hcCh-h----hHhhHHHHHHHHHh----cc---CC---Cch--H--hHHHHHHHHHHHHhccCccccHHHHHHHHHHhHh
Q 003195 349 VVDT-E----SLDQLVPHLARLVR----SG---IG---LNT--R--VGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVK 409 (840)
Q Consensus 349 ~~d~-~----~l~~lvp~L~~~lk----~~---~~---~~~--r--~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~ 409 (840)
..++ + .+..+++.+.+.++ .. .. .+. + ...++++..++..+|..|.|+.+.++..++..+
T Consensus 619 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~- 697 (1049)
T 3m1i_C 619 EERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLY- 697 (1049)
T ss_dssp TCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH-
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-
Confidence 4441 2 12333333332221 10 00 011 1 134566777788889999888887777665433
Q ss_pred hcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcC
Q 003195 410 EEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFE 489 (840)
Q Consensus 410 ~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d 489 (840)
... ...-..+..+-|.. . ...-+..++..+.|.+....
T Consensus 698 ~~~-~~~~~~~~~~~g~~-------------------------------------~--~~~p~~~~~~~~~~~l~~ll-- 735 (1049)
T 3m1i_C 698 RAV-SSMISAQVAAEGLI-------------------------------------A--TKTPKVRGLRTIKKEILKLV-- 735 (1049)
T ss_dssp HHH-HHHHHHHHHHHCGG-------------------------------------G--GGSHHHHHHHHHHHHHHHHH--
T ss_pred HHH-HHHHHHHHHccCch-------------------------------------h--hhhHHHHHHHHHHHHHHHHH--
Confidence 110 00000000000000 0 11112233334444432210
Q ss_pred CchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHH-HHHHHHHHHHHHHhCcchhhhHHHHHHHHHHh
Q 003195 490 DDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSK-RKSAKAICKLGEILGESLSNYHHVLLESIMKE 568 (840)
Q Consensus 490 ~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR-~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~ 568 (840)
+.|..-.......+.+|++++++.+...........| ..+..+++.++..+|+.+.++++.+++.+..+
T Consensus 736 ----------~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~ 805 (1049)
T 3m1i_C 736 ----------ETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFEC 805 (1049)
T ss_dssp ----------HHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHH
T ss_pred ----------HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 1111111111122456677776666554332222211 45778899999999998999999999988777
Q ss_pred c-----C--CCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHc
Q 003195 569 V-----P--GRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAF 636 (840)
Q Consensus 569 l-----~--~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~ 636 (840)
. . +...+.++..+.-+..++..|...+....+.....+++.+...++..+..+.+.++..+.+++...
T Consensus 806 ~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~ 880 (1049)
T 3m1i_C 806 TLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNI 880 (1049)
T ss_dssp HHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Confidence 4 2 235789999999999999988776532111235677777777888889999999999998888764
No 30
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.51 E-value=4.5e-11 Score=142.47 Aligned_cols=471 Identities=9% Similarity=0.001 Sum_probs=278.9
Q ss_pred hHHHHHHHhhhcC-------CchHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhh--hhHHHHHHhhcCCCC
Q 003195 59 TYKELCNLANEMG-------QPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHL--RLLIPKLVRFQYDPD 129 (840)
Q Consensus 59 tyk~l~~lA~~~g-------~p~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l--~~lvP~L~~~~~Dp~ 129 (840)
+-+.|.+++.+-. .+..+..++.+..+......++.|+.+|..+..... ....+ ...+|.|.....+++
T Consensus 34 A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~lL~~~~ 111 (644)
T 2z6h_A 34 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE--GLLAIFKSGGIPALVKMLGSPV 111 (644)
T ss_dssp HHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH--HHHHHHTTTHHHHHHHHTTCSS
T ss_pred HHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh--hHHHHHHcCCHHHHHHHHhCCC
Confidence 3445666665432 235677777766554346677888888877654321 11111 258999999999999
Q ss_pred HhHHHHHHHHHHHhccCChHHHHHHH-HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHh
Q 003195 130 KNVQDAMAHIWKSLVADPKRTIDEHL-DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAM 208 (840)
Q Consensus 130 ~~VR~a~~~iw~~Lv~d~~~~i~~~~-~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~l 208 (840)
+.||..+..++..+..+......... ..+++.|+..+.++++++|..++.+|.++..+.+.....-.-...++.+.+.+
T Consensus 112 ~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL 191 (644)
T 2z6h_A 112 DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 191 (644)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHH
Confidence 99999998888888765322233232 45788889999999999999999999998864321111111124466667777
Q ss_pred ccc-cHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHH-HhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhcccc
Q 003195 209 DDI-KETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSM-DIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAI 286 (840)
Q Consensus 209 dD~-~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l-~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l 286 (840)
.+. .+.++..+..+++.++. +. .....++ ...+|.|+. -+.+++.+++..++.+|.+++......
T Consensus 192 ~~~~~~~~~~~a~~~L~nLs~-----~~------~~~~~l~~~g~l~~L~~-ll~~~~~~~~~~a~~~L~nL~~~~~~~- 258 (644)
T 2z6h_A 192 RTYTYEKLLWTTSRVLKVLSV-----CS------SNKPAIVEAGGMQALGL-HLTDPSQRLVQNCLWTLRNLSDAATKQ- 258 (644)
T ss_dssp TTCCCHHHHHHHHHHHHHHTT-----CT------THHHHHHHTTHHHHHHT-TTTCSCHHHHHHHHHHHHHHGGGCTTC-
T ss_pred HcCChHHHHHHHHHHHHHHhc-----Cc------ccHHHHHHCCCHHHHHH-HHhcCCHHHHHHHHHHHHHHhhcchhh-
Confidence 654 45667777666665531 11 0111222 235777763 355567899999999999998765432
Q ss_pred ccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHH
Q 003195 287 RPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLV 366 (840)
Q Consensus 287 ~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~l 366 (840)
.....++|.|++.+.+..+.++...++...+..... +..| ..+++ ...+|.|++.+
T Consensus 259 -~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~---~~~~-------------~~v~~-------~g~v~~Lv~lL 314 (644)
T 2z6h_A 259 -EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN---YKNK-------------MMVCQ-------VGGIEALVRTV 314 (644)
T ss_dssp -CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC---HHHH-------------HHHHH-------TTHHHHHHHHH
T ss_pred -hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC---HHHH-------------HHHHH-------cCCHHHHHHHH
Confidence 344678999999998766655443333222110000 0000 00000 23567777777
Q ss_pred hccCC-CchHhHHHHHHHHHHHHhccC--ccc--cHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHH-HH--HH
Q 003195 367 RSGIG-LNTRVGVASFISLLVQKIGMD--IKP--YTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS-QA--QK 438 (840)
Q Consensus 367 k~~~~-~~~r~~a~~~l~~L~~~~~~~--~~p--~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~-~~--~~ 438 (840)
++..+ ..++..|+.+|..|+...+.. ... .....++.++..+.++.+..|++.++.+++.+....... .+ ..
T Consensus 315 ~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~ 394 (644)
T 2z6h_A 315 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG 394 (644)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTT
T ss_pred HccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcC
Confidence 65422 467888999998886432210 000 112457888888843335799999999999987532211 11 12
Q ss_pred HHHHHHHhhcC-----------------------ChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHH
Q 003195 439 LIEETAALHID-----------------------DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVS 495 (840)
Q Consensus 439 li~~l~~~~~~-----------------------d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr 495 (840)
.++.+.+.+.. +++.+..++.++..+++....+..-.....+|.+.....+.+++++
T Consensus 395 ~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~ 474 (644)
T 2z6h_A 395 AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQ 474 (644)
T ss_dssp HHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHH
T ss_pred CHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHH
Confidence 34444443321 1334556667777776543222211123366766666778888888
Q ss_pred HHHHHHHHHhcCCChhhHHhhHH--HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCC
Q 003195 496 DLFEELWEENTSGDRVTLQLYLG--EIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGR 572 (840)
Q Consensus 496 ~~~~~i~~~~~~~~~~~i~~yl~--~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r 572 (840)
.....++..+... ...+..+. ..++.+.+.+.+++.++|+.|+.+|+.++...+....... -+..+.+-++..
T Consensus 475 ~~a~~aL~~l~~~--~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~--~~~il~~~~~~~ 549 (644)
T 2z6h_A 475 RVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRL--SVELTSSLFRTE 549 (644)
T ss_dssp HHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHH--HHHHHHHHSCCS
T ss_pred HHHHHHHHHHHcC--HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhccc--chHHHHHHHhCC
Confidence 7666555554432 12222222 2467788888999999999999999998865432222111 244455555543
No 31
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.51 E-value=8.2e-14 Score=145.46 Aligned_cols=206 Identities=14% Similarity=0.104 Sum_probs=162.8
Q ss_pred HHHHhccccchhhhhhHHhHHHH-HHHHhhhhh--chhhhhHHHHHHhhc-CCCCHhHHHHHHHHHHHhccCCh-HHHH-
Q 003195 79 FMDLANYQVSLNSKRGAAFGFSK-IAKQAGDAL--KPHLRLLIPKLVRFQ-YDPDKNVQDAMAHIWKSLVADPK-RTID- 152 (840)
Q Consensus 79 fm~la~~~~~w~sr~gA~~~l~~-I~~~~~~~l--~~~l~~lvP~L~~~~-~Dp~~~VR~a~~~iw~~Lv~d~~-~~i~- 152 (840)
|.+... ++.|..|++|..+++. +++++.+.. ...+..++..|.... .|+|+.||.++++++..|+...+ ..+.
T Consensus 21 f~~~l~-s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERIT-SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHHT-CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHhh-cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 444443 3469999999999999 998876655 444567788888888 89999999999999999987654 4566
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Q 003195 153 EHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIR 232 (840)
Q Consensus 153 ~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir 232 (840)
.|+..+++.+++.++|+...||+++..|+..+++..++....+|++.+++.++..++..++.||.++...+..+...
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~--- 176 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE--- 176 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH---
Confidence 89999999999999999999999999999999987654333345999999999999999999999987766655321
Q ss_pred hhhccccccchHHhHH-HhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhcc-ccccchHHH
Q 003195 233 LCDVTLTEISDARQSM-DIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGI-AIRPHLSDL 293 (840)
Q Consensus 233 ~~~~~~~~~~~~~~~l-~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~-~l~p~lp~L 293 (840)
.. ..+......+ +.++|.|. +.+.++..+||..|.++++.+++..|+ .+.||++.+
T Consensus 177 -~~---~~~~~l~~~l~~~iip~l~-~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 177 -EK---DGYSTLQRYLKDEVVPIVI-QIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp -CC---SCSHHHHHHHTTTHHHHHH-HHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred -cC---CcchhHHHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 11 0011233577 88999887 467778899999999999999999987 488887653
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.49 E-value=2.9e-11 Score=146.94 Aligned_cols=486 Identities=9% Similarity=-0.040 Sum_probs=276.4
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHH
Q 003195 117 LIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKH 196 (840)
Q Consensus 117 lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~ 196 (840)
-+|.+...+.+|++.+|+++......+- + . ..-...++.|+..+.+++..+|+.|+.+|..|............
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~~-~--~---~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~ 189 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQD-D--A---ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMR 189 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHHH-H--H---HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTT
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhhh-H--H---HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHh
Confidence 3677777779999999999887776431 1 1 12245666677777788999999999999998764221111111
Q ss_pred HHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhH-HHhHHHHHHhcccCCchhHHHHHHHHH
Q 003195 197 LRRIWTAAFRAMDD-IKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQS-MDIVLPFLLAEGILSKVDSISKASIGV 274 (840)
Q Consensus 197 L~~l~~~l~~~ldD-~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~-l~~lLP~Ll~~gL~s~~~evr~~al~~ 274 (840)
.+.+++.+++.|.+ ..+.+|..|..++..++..- + ....+ -...+|.|+. -+.+++..+|..++.+
T Consensus 190 ~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~----~-------~~~~i~~~g~I~~Lv~-lL~~~~~~v~~~A~~a 257 (780)
T 2z6g_A 190 SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR----E-------GLLAIFKSGGIPALVN-MLGSPVDSVLFHAITT 257 (780)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH----H-------HHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHH
T ss_pred ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc----h-------hHHHHHHcCCHHHHHH-HHcCCCHHHHHHHHHH
Confidence 23677777777764 37889998877777654210 0 00111 1245777764 3556678999999999
Q ss_pred HHHHHHhhccccccch-HHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcH--------------
Q 003195 275 VMKLVKGAGIAIRPHL-SDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPM-------------- 339 (840)
Q Consensus 275 L~~la~~~g~~l~p~l-p~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l-------------- 339 (840)
|.+++......-.... ...+|.|++.+.+..+.+............... ++.|..+...+.+
T Consensus 258 L~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~---~e~~~~i~~~~~i~~Lv~lL~~~~~~~ 334 (780)
T 2z6g_A 258 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN---QESKLIILASGGPQALVNIMRTYTYEK 334 (780)
T ss_dssp HHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC---HHHHHHHHTTTHHHHHHHHHTTCCCHH
T ss_pred HHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC---hHHHHHHHHcCCHHHHHHHHhcCCHHH
Confidence 9999986433222221 357889999887654443222111111000000 0111111111100
Q ss_pred -----HHHHHHHHhhcC--hhhH-hhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhc
Q 003195 340 -----WDTLDLCINVVD--TESL-DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEE 411 (840)
Q Consensus 340 -----~eal~~~~~~~d--~~~l-~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d 411 (840)
..++..+...-+ ...+ ...+|.|...+++. +...+..|+.++..|+...... .....+++.++..+ .+
T Consensus 335 ~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL-~~ 410 (780)
T 2z6g_A 335 LLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLL-GS 410 (780)
T ss_dssp HHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCS-CHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCC-chHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHH-cC
Confidence 111111111000 0011 23567777777664 4456677888888887654332 23467899999988 68
Q ss_pred CcHHHHHHHHHHHHHhhhcCCHHHH-----HHHHHHHHHhhc--CC-hhhhHHHHHHHHHHHhhchhh--hh-h-hHhhH
Q 003195 412 KSAAAKRAFASACASVLKYATPSQA-----QKLIEETAALHI--DD-KNSQISCAILLKSYSSVASDV--LS-G-YHAVI 479 (840)
Q Consensus 412 ~~~~Vr~~a~~Alg~l~~~~~~~~~-----~~li~~l~~~~~--~d-~~~r~~~~~~i~ai~~~~~~~--f~-~-~~~~l 479 (840)
.+..||+.++.+++.+....+ +.. ...++.+++.+. ++ ++.|..++.+++.++...++. .. . .....
T Consensus 411 ~d~~vr~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~ 489 (780)
T 2z6g_A 411 DDINVVTCAAGILSNLTCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYG 489 (780)
T ss_dssp SCHHHHHHHHHHHHHHTSSCH-HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCC
Confidence 899999999999999976432 211 124556666553 23 378888899999887543331 11 1 11234
Q ss_pred hHHHHHhhcCCc-hHHHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHHhhhcCCC----------------------HHH
Q 003195 480 VPVIFISRFEDD-KYVSDLFEELWEENTSGDRVTLQLYL-GEIVSLICEGIASSS----------------------WSS 535 (840)
Q Consensus 480 lP~l~~~~~d~d-~~vr~~~~~i~~~~~~~~~~~i~~yl-~~Il~~l~~~L~d~s----------------------~~v 535 (840)
+|.+......++ +.++.....++..+..+.. .-.... ..+++.+.+.+.+.+ .++
T Consensus 490 l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v 568 (780)
T 2z6g_A 490 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI 568 (780)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH-HHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH-HHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHH
Confidence 666655555444 4777665555555543321 111111 124444444444333 346
Q ss_pred HHHHHHHHHHHHHHhCcchhhh--HHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchH--HHHHHHH
Q 003195 536 KRKSAKAICKLGEILGESLSNY--HHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPF--AIVDMVS 611 (840)
Q Consensus 536 R~~Aa~~L~~La~~~~~~l~~~--l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~--~i~~~l~ 611 (840)
+..++.+|+.++.. ...... -...+|.|++.+.+...+.+..+..+|..++.. .+ .. ..+. ..++.+.
T Consensus 569 ~~~a~~aL~~La~~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-~~-~~----~~i~~~g~i~~L~ 640 (780)
T 2z6g_A 569 VEACTGALHILARD--IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KE-AA----EAIEAEGATAPLT 640 (780)
T ss_dssp HHHHHHHHHHHTTS--HHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS-HH-HH----HHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcC--hhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-HH-HH----HHHHHCCCHHHHH
Confidence 66777888877631 111111 134578888999888889999999998888632 11 00 0011 1345666
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHcC
Q 003195 612 SACRKKIKKYREAAFSCLEQVIKAFR 637 (840)
Q Consensus 612 ~~~~~~~~~~R~~Al~~L~~l~~~~~ 637 (840)
+.+++++..+|..|..+|..+...-+
T Consensus 641 ~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 641 ELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 77778899999999999999998555
No 33
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.49 E-value=2.3e-10 Score=135.39 Aligned_cols=466 Identities=11% Similarity=0.014 Sum_probs=278.6
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhH
Q 003195 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGK 195 (840)
Q Consensus 116 ~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~ 195 (840)
.+.+...+++.+++..+|+...-....+....++ -.-.+...+.+.+.|++.-+|..|..+++.+.. + .
T Consensus 70 ~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e----~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~---~ 138 (618)
T 1w63_A 70 FGQLECLKLIASQKFTDKRIGYLGAMLLLDERQD----VHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS----S---E 138 (618)
T ss_dssp GGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC----H---H
T ss_pred chHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC----H---H
Confidence 3556666667899999999877666666654322 233456667778889999999999999999842 2 3
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHH
Q 003195 196 HLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVV 275 (840)
Q Consensus 196 ~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L 275 (840)
..+.+++.+.+.+.|.++.||++|..++..+... . .+.+..++|.+. ..+.+++..|+..++.++
T Consensus 139 ~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~-----~---------p~~v~~~~~~l~-~lL~D~d~~V~~~Al~~L 203 (618)
T 1w63_A 139 MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRK-----V---------PELMEMFLPATK-NLLNEKNHGVLHTSVVLL 203 (618)
T ss_dssp HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH-----C---------GGGGGGGGGGTT-TSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-----C---------hHHHHHHHHHHH-HHhCCCCHhHHHHHHHHH
Confidence 4557788888889999999999997777666432 1 123345666654 345566789999999999
Q ss_pred HHHHHhhcc---ccccchHHHHHHHHHhcc-----------CchhHhHHHHHHhhhhcccchhh----hHHHHHhhc---
Q 003195 276 MKLVKGAGI---AIRPHLSDLVSCMLESLS-----------SLEDQGLNYIELHAANAGIQTEK----LENLRISIA--- 334 (840)
Q Consensus 276 ~~la~~~g~---~l~p~lp~Lv~~Ll~~ls-----------~~ep~~~~~l~~~a~~~~~~~~~----~d~~R~~~~--- 334 (840)
..++...+. .+.+.+|.++..|-+... ...|+....+..-...+...+.. +.+.-....
T Consensus 204 ~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~ 283 (618)
T 1w63_A 204 TEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNT 283 (618)
T ss_dssp HHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTS
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcc
Confidence 998865432 334444444444433221 12455433332222222221111 000000000
Q ss_pred ---c---CCcHHHHHHHHHhhcChh-hHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHh
Q 003195 335 ---K---GSPMWDTLDLCINVVDTE-SLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPV 407 (840)
Q Consensus 335 ---~---~s~l~eal~~~~~~~d~~-~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~ 407 (840)
+ .+-+.+++..+...-... .....++.|...+.+. +.++|..|+..+..++...+..+.+|...+ +..
T Consensus 284 ~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i----~~~ 358 (618)
T 1w63_A 284 ETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNN-DKNIRYVALTSLLKTVQTDHNAVQRHRSTI----VDC 358 (618)
T ss_dssp CCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHHHHHHGGGHHHH----HHG
T ss_pred ccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhCHHHHHHHHHHH----HHH
Confidence 0 012344544444332222 2234566777777664 678999999999999998887777766544 455
Q ss_pred HhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHh
Q 003195 408 VKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFIS 486 (840)
Q Consensus 408 l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~ 486 (840)
+ +|++..||+.+...+..++...+ +..+++.+.+.+. .|.+.|..+..+++.++...++.+..|++.++.++-..
T Consensus 359 l-~d~d~~Ir~~alelL~~l~~~~n---v~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~ 434 (618)
T 1w63_A 359 L-KDLDVSIKRRAMELSFALVNGNN---IRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTA 434 (618)
T ss_dssp G-GSSCHHHHHHHHHHHHHHCCSSS---THHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHT
T ss_pred c-cCCChhHHHHHHHHHHHHccccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhc
Confidence 5 68889999999999888875433 3444555544332 57889999999999998876666777777666544322
Q ss_pred hcCCchHHHHHHHHHHHHhcCCChhhHHh-hHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCc---------chhh
Q 003195 487 RFEDDKYVSDLFEELWEENTSGDRVTLQL-YLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE---------SLSN 556 (840)
Q Consensus 487 ~~d~d~~vr~~~~~i~~~~~~~~~~~i~~-yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~---------~l~~ 556 (840)
...-..++-..+.++... .+. ++. .+..++..+.... .+..+.+.++-+||..+..... .+.|
T Consensus 435 ~~~v~~~~~~~l~~ii~~-~p~----l~~~~v~~L~~~l~~~~--~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~ 507 (618)
T 1w63_A 435 GSYVRDDAVPNLIQLITN-SVE----MHAYTVQRLYKAILGDY--SQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTE 507 (618)
T ss_dssp GGGSCSSHHHHHHHHHHH-SCS----THHHHHHHHHHHHHHCC--SCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCH
T ss_pred cchhHHHHHHHHHHHHhc-Chh----HHHHHHHHHHHHHhccc--ccHHHHHHHHHHHhhhHHHhcccccccccccCCCH
Confidence 111111222222233321 222 222 2334444443321 2345556789999999876532 1111
Q ss_pred hHHHHHHHHHHhcC--CCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 003195 557 YHHVLLESIMKEVP--GRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVI 633 (840)
Q Consensus 557 ~l~~llp~L~~~l~--~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~ 633 (840)
..+.+.|...++ ..+..+|..++.|++.+....+ ...+.+...+.....+.+..+|..|...+.-+.
T Consensus 508 --~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~--------~~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 508 --DEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFT--------CTVNRIKKVVSIYGSSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp --HHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCS--------SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCc--------chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 223333333232 3467789999999988876543 224555555555555678899999987654443
No 34
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.48 E-value=1.7e-10 Score=137.91 Aligned_cols=522 Identities=12% Similarity=0.057 Sum_probs=309.2
Q ss_pred hhhhhhHHhHHHHHHHHhh-----hhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHH--HHHHHH
Q 003195 89 LNSKRGAAFGFSKIAKQAG-----DALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHL--DLIFDD 161 (840)
Q Consensus 89 w~sr~gA~~~l~~I~~~~~-----~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~--~~Il~~ 161 (840)
-+.|..++.++..+++... +.+...+.+.+-..+ ...|.+..||. ......+.+.+++.-...+ +-.++.
T Consensus 218 ~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a--~~alt~i~~g~~~~~~~~~~~~G~v~~ 294 (810)
T 3now_A 218 GSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKL-LAPDMESKVRV--TVAITALLNGPLDVGNQVVAREGILQM 294 (810)
T ss_dssp TTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHH-SSCCHHHHHHH--HHHHHHHHSSSHHHHHHHHHTTTHHHH
T ss_pred hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh-ccCChHhHHHH--HHHHHHHhcCCHHHHHHHHhccchHHH
Confidence 4678888899999998653 333333333333322 12333444442 3344455555555444333 247788
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHccCCch-hhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 003195 162 LLIQSGSRLWRSREASCLSLADIIQGRKFD-QVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTE 240 (840)
Q Consensus 162 Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~-~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~ 240 (840)
++..+.+++..+++.|+++++........- .+..+ .+ +.+...+....+.+|.-|...+..++... ..++..
T Consensus 295 li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~--gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~--~~d~~~-- 367 (810)
T 3now_A 295 ILAMATTDDELQQRVACECLIAASSKKDKAKALCEQ--GV-DILKRLYHSKNDGIRVRALVGLCKLGSYG--GQDAAI-- 367 (810)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHH--HH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTT--TTTTSC--
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHc--Cc-HHHHHHHcCCCHHHHHHHHHHHHHhcccc--ccCccc--
Confidence 888888889999999999999976552211 12221 12 66666677666778886554444332100 001110
Q ss_pred cchHHhHHHhHHHHHHhcccCCc--hhHHHHHHHHHHHHHHHhhc--cccccchHHHHHHHHHhccCchhHhHHHHHHhh
Q 003195 241 ISDARQSMDIVLPFLLAEGILSK--VDSISKASIGVVMKLVKGAG--IAIRPHLSDLVSCMLESLSSLEDQGLNYIELHA 316 (840)
Q Consensus 241 ~~~~~~~l~~lLP~Ll~~gL~s~--~~evr~~al~~L~~la~~~g--~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a 316 (840)
.......+..++|.+. +.|.++ +.++|..+++.|..++.... ..+.- -+..+|.|++.+++.++.......+..
T Consensus 368 ~~~~~g~i~~Lv~~l~-~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~-d~g~Ip~LV~LL~s~d~~i~~~al~~L 445 (810)
T 3now_A 368 RPFGDGAALKLAEACR-RFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIE-DKASIHALMDLARGGNQSCLYGVVTTF 445 (810)
T ss_dssp CSSTTTHHHHHHHHHH-HHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHH-CHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cchhhccHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHH-ccchHHHHHHHhCCCChHHHHHHHHHH
Confidence 1111223455666655 234444 67899999999999986432 11211 145788888888765544332222322
Q ss_pred hhcccc---hhhhHHHHHhhcc--------CCcHHH--HHHHHHhhcChhhH-hhHHHHHHHHHhccCCCchHhHHHHHH
Q 003195 317 ANAGIQ---TEKLENLRISIAK--------GSPMWD--TLDLCINVVDTESL-DQLVPHLARLVRSGIGLNTRVGVASFI 382 (840)
Q Consensus 317 ~~~~~~---~~~~d~~R~~~~~--------~s~l~e--al~~~~~~~d~~~l-~~lvp~L~~~lk~~~~~~~r~~a~~~l 382 (840)
.+.... ++.++..+. ..+ ..++.+ .+.+-++. ++ ...+|.|+++++++ ...+|..|+.+|
T Consensus 446 ~NLt~~~d~q~~~~~l~~-la~~s~~~v~~~~~ld~~~~v~~r~~~----VveaGaVp~LV~LL~s~-s~~vqe~Aa~aL 519 (810)
T 3now_A 446 VNLCNAYEKQEMLPEMIE-LAKFAKQHIPEEHELDDVDFINKRITV----LANEGITTALCALAKTE-SHNSQELIARVL 519 (810)
T ss_dssp HHHTTCSCCCCCCCSCGG-GTTTTCCSCCCSSCHHHHHHHHHHHHH----HHHTTHHHHHHHHHTCC-CHHHHHHHHHHH
T ss_pred HHHcCCchhhhhhHHHHH-HHHHhhccCccccccccHHHHHHHHHH----HHHCcCHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 221110 111111100 000 011111 01000011 11 13789999999875 567888999999
Q ss_pred HHHHHHhccCcccc-H-HHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHH------HHHHHHHHHHhhcCCh--h
Q 003195 383 SLLVQKIGMDIKPY-T-SMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQ------AQKLIEETAALHIDDK--N 452 (840)
Q Consensus 383 ~~L~~~~~~~~~p~-~-~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~------~~~li~~l~~~~~~d~--~ 452 (840)
..|+..- . .+.. . ...++.|+..+ ...+..+++.++.|++.++...+++. ....+++|.+++..+. .
T Consensus 520 ~NLA~d~-~-~r~~Vv~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l 596 (810)
T 3now_A 520 NAVCGLK-E-LRGKVVQEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTAL 596 (810)
T ss_dssp HHHHTSH-H-HHHHHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHH
T ss_pred HHHcCCH-H-HHHHHHHCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHH
Confidence 9997421 1 1111 1 14578888888 56778999999999999987665543 2346888888876432 2
Q ss_pred hhHHHHHHHHHHHhhchhhhhhhH-hhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhH--HHHHHHHHhhhc
Q 003195 453 SQISCAILLKSYSSVASDVLSGYH-AVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYL--GEIVSLICEGIA 529 (840)
Q Consensus 453 ~r~~~~~~i~ai~~~~~~~f~~~~-~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl--~~Il~~l~~~L~ 529 (840)
.+..+..++..++....+.-.... ...+|.+...+.++++.++.....++..++.+. .....+. ...++.+...+.
T Consensus 597 ~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~ 675 (810)
T 3now_A 597 ENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE-DVIKMFEGNNDRVKFLALLCE 675 (810)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH-HHHHHHHSSSSHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-HHHHHHHhccCcHHHHHHHhc
Confidence 344577788888765433211111 124555555555667788887777776666543 3344454 257889999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHH
Q 003195 530 SSSWSSKRKSAKAICKLGEILGESLSNYH--HVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIV 607 (840)
Q Consensus 530 d~s~~vR~~Aa~~L~~La~~~~~~l~~~l--~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~ 607 (840)
+.+..+|+.|+.+|+.++..........+ ...+|.|++-+...+...|..++.++..++.+.++.... -.-...+
T Consensus 676 s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~---l~e~G~i 752 (810)
T 3now_A 676 DEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKK---LFETDIM 752 (810)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHH---HHTSTHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHH---HHHCCCH
Confidence 99999999999999999975333333223 357888888888888999999999999998754321100 0001244
Q ss_pred HHHHHHHhh---cCHHHHHHHHHHHHHHHHH
Q 003195 608 DMVSSACRK---KIKKYREAAFSCLEQVIKA 635 (840)
Q Consensus 608 ~~l~~~~~~---~~~~~R~~Al~~L~~l~~~ 635 (840)
+.+.+.++. ++.++++.|+.+|..+++.
T Consensus 753 ~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 753 ELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp HHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 455555433 4789999999999998874
No 35
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.48 E-value=2.8e-11 Score=140.21 Aligned_cols=460 Identities=8% Similarity=-0.015 Sum_probs=272.7
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHH--HHHHHHHHHhhC-CCChhHHHHHHHHHHHHHccCCchh
Q 003195 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHL--DLIFDDLLIQSG-SRLWRSREASCLSLADIIQGRKFDQ 192 (840)
Q Consensus 116 ~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~--~~Il~~Ll~~l~-~~~wrvR~aac~Al~~Ll~~~~~~~ 192 (840)
..+|.|..+..++++.||..+..+...+..+.. .....+ ...++.|+..+. +++|.+|..++.+|.++.....
T Consensus 17 ~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~--- 92 (529)
T 1jdh_A 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE--- 92 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH---
T ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCc-cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch---
Confidence 467788888899999999999999998887643 222222 245666776664 3589999999999999865321
Q ss_pred hhHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHH-HhHHHHHHhcccCCchhHHHH
Q 003195 193 VGKHL--RRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSM-DIVLPFLLAEGILSKVDSISK 269 (840)
Q Consensus 193 l~~~L--~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l-~~lLP~Ll~~gL~s~~~evr~ 269 (840)
....+ ...++.+.+.+.+..+.||..|..++..++... + . ....+. ...+|.|+. -+.+++++++.
T Consensus 93 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~----~-~-----~~~~i~~~g~i~~L~~-ll~~~~~~~~~ 161 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ----E-G-----AKMAVRLAGGLQKMVA-LLNKTNVKFLA 161 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC----T-T-----HHHHHHHHTHHHHHHH-GGGCCCHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC----c-c-----hHHHHHHcCCHHHHHH-HHhcCCHHHHH
Confidence 11111 147788888899988999998877777664320 0 0 011111 346777774 35567788999
Q ss_pred HHHHHHHHHHHhhc---cccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHH
Q 003195 270 ASIGVVMKLVKGAG---IAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLC 346 (840)
Q Consensus 270 ~al~~L~~la~~~g---~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~ 346 (840)
.++.+|..++.... ..+.. ...++.|++.+.+..+..+.+... .++..+
T Consensus 162 ~~~~~L~~la~~~~~~~~~i~~--~~~i~~L~~ll~~~~~~~~~~~a~--------------------------~~L~~l 213 (529)
T 1jdh_A 162 ITTDCLQILAYGNQESKLIILA--SGGPQALVNIMRTYTYEKLLWTTS--------------------------RVLKVL 213 (529)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH--TTHHHHHHHHHHHCCCHHHHHHHH--------------------------HHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHH--CCCHHHHHHHHHhCChHHHHHHHH--------------------------HHHHHH
Confidence 99999988875211 11111 134666666665433322211100 011111
Q ss_pred HhhcC--hhhH-hhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHH
Q 003195 347 INVVD--TESL-DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASA 423 (840)
Q Consensus 347 ~~~~d--~~~l-~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~A 423 (840)
...-+ .... ...+|.+.+.+++. +...+..++.++..|+...+.. ......++.++..+ .+.++.||..++.+
T Consensus 214 ~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll-~~~~~~v~~~a~~~ 289 (529)
T 1jdh_A 214 SVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLL-GSDDINVVTCAAGI 289 (529)
T ss_dssp TTSTTHHHHHHHTTHHHHHHTTTTSS-CHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHT-TCSCHHHHHHHHHH
T ss_pred hcCcccHHHHHHCCCHHHHHHHHhCC-ChHHHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHH-cCCCHHHHHHHHHH
Confidence 10000 0001 23667777777665 4556778888888887654322 23467899999998 78899999999999
Q ss_pred HHHhhhcCCHHHHH-----HHHHHHHHhhc---CChhhhHHHHHHHHHHHhhchhh--hh-hh-HhhHhHHHHHhhcCCc
Q 003195 424 CASVLKYATPSQAQ-----KLIEETAALHI---DDKNSQISCAILLKSYSSVASDV--LS-GY-HAVIVPVIFISRFEDD 491 (840)
Q Consensus 424 lg~l~~~~~~~~~~-----~li~~l~~~~~---~d~~~r~~~~~~i~ai~~~~~~~--f~-~~-~~~llP~l~~~~~d~d 491 (840)
++.+.... ++... ..++.+.+.+. ++++.+..+..+++.++...++. .. .. ....+|.+.....++.
T Consensus 290 L~~L~~~~-~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~ 368 (529)
T 1jdh_A 290 LSNLTCNN-YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 368 (529)
T ss_dssp HHHHTTTC-HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTC
T ss_pred HHHHhcCC-HHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhcccc
Confidence 99997643 22221 23455555553 23678888888999887654321 11 11 1124666665555544
Q ss_pred -hHHHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHHhhhcCCCHHHHHHHHHHHHH----------------------HH
Q 003195 492 -KYVSDLFEELWEENTSGDRVTLQLYL-GEIVSLICEGIASSSWSSKRKSAKAICK----------------------LG 547 (840)
Q Consensus 492 -~~vr~~~~~i~~~~~~~~~~~i~~yl-~~Il~~l~~~L~d~s~~vR~~Aa~~L~~----------------------La 547 (840)
++++.....+...+..+... ..... ..+++.+.+.+.+.++++|+.|+.+++. ++
T Consensus 369 ~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~ 447 (529)
T 1jdh_A 369 HWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA 447 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhcChhh-hHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHh
Confidence 47776655555555543221 12222 3567777788888888888866654443 22
Q ss_pred HHhCcchhhh--HHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHh--cccccccCCCCchHHHHHHHHHHHhhcCHHHHH
Q 003195 548 EILGESLSNY--HHVLLESIMKEVPGRLWEGKDALLYAIGSISTS--CHKDISAEDPTTPFAIVDMVSSACRKKIKKYRE 623 (840)
Q Consensus 548 ~~~~~~l~~~--l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~--~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~ 623 (840)
... ..... -...+|.|++.+.+...+.+..+..++..+... ....+. -...++.+.+.+.+.+..+|.
T Consensus 448 ~~~--~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~------~~~~~~~L~~l~~~~~~~v~~ 519 (529)
T 1jdh_A 448 RDV--HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIE------AEGATAPLTELLHSRNEGVAT 519 (529)
T ss_dssp TSH--HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHH------HTTCHHHHHHGGGCSSHHHHH
T ss_pred cCc--hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHH------HcCChHHHHHHhcCCCHHHHH
Confidence 110 00000 123557888888888888998888888887631 000010 012345666677788999999
Q ss_pred HHHHHHHHH
Q 003195 624 AAFSCLEQV 632 (840)
Q Consensus 624 ~Al~~L~~l 632 (840)
.|..+|.++
T Consensus 520 ~a~~aL~~l 528 (529)
T 1jdh_A 520 YAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998875
No 36
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.47 E-value=3e-11 Score=144.02 Aligned_cols=469 Identities=8% Similarity=-0.037 Sum_probs=282.4
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHH--HHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHccCCchh
Q 003195 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHL--DLIFDDLLIQSGSR-LWRSREASCLSLADIIQGRKFDQ 192 (840)
Q Consensus 116 ~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~--~~Il~~Ll~~l~~~-~wrvR~aac~Al~~Ll~~~~~~~ 192 (840)
..+|.|..+..++++.||..+..+...+..+... ....+ ..+++.|+..+.+. ++.+|..++.+|..+..... ..
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~-~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~-~~ 91 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS-RHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE-GL 91 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTH-HHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH-HH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChh-HHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh-hH
Confidence 3577777777899999999999999999876532 22222 35677777777654 78999999999998765421 11
Q ss_pred hhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHH-HhHHHHHHhcccCCchhHHHHHH
Q 003195 193 VGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSM-DIVLPFLLAEGILSKVDSISKAS 271 (840)
Q Consensus 193 l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l-~~lLP~Ll~~gL~s~~~evr~~a 271 (840)
..-+-...++.+.+.+.+..+.||..|..++..++... +. ....+. ...+|.|+. -+.+++.+++..+
T Consensus 92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~----~~------~~~~v~~~g~i~~Lv~-lL~~~~~~~~~~a 160 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ----EG------AKMAVRLAGGLQKMVA-LLNKTNVKFLAIT 160 (644)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS----TT------HHHHHHHTTHHHHHHH-GGGCCCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc----ch------hHHHHHHCCChHHHHH-HHCcCCHHHHHHH
Confidence 11111247788888999989999999887777765321 00 111122 356777774 3556667889999
Q ss_pred HHHHHHHHHhhccc-cccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhc
Q 003195 272 IGVVMKLVKGAGIA-IRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVV 350 (840)
Q Consensus 272 l~~L~~la~~~g~~-l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~ 350 (840)
+.+|.+++...... ..-.-...++.|++.+.+...+...+.. ..++..+...-
T Consensus 161 ~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a--------------------------~~~L~nLs~~~ 214 (644)
T 2z6h_A 161 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT--------------------------SRVLKVLSVCS 214 (644)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHH--------------------------HHHHHHHTTCT
T ss_pred HHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHH--------------------------HHHHHHHhcCc
Confidence 99999988532110 0001124577777777654322111100 00111111000
Q ss_pred C--hhhH-hhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHh
Q 003195 351 D--TESL-DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASV 427 (840)
Q Consensus 351 d--~~~l-~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l 427 (840)
+ ...+ ...+|.|.+.+++. ....+..++.+|..|+...+. . ......++.++..+ .+.+..||+.++.+++++
T Consensus 215 ~~~~~l~~~g~l~~L~~ll~~~-~~~~~~~a~~~L~nL~~~~~~-~-~~~~~~i~~Lv~lL-~~~d~~v~~~a~~aL~~L 290 (644)
T 2z6h_A 215 SNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDAATK-Q-EGMEGLLGTLVQLL-GSDDINVVTCAAGILSNL 290 (644)
T ss_dssp THHHHHHHTTHHHHHHTTTTCS-CHHHHHHHHHHHHHHGGGCTT-C-CSCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcchh-h-hhhhhHHHHHHHHH-cCCCHHHHHHHHHHHHHH
Confidence 0 0001 13567777777664 456677888888888654332 2 33457899999998 678899999999999999
Q ss_pred hhcCCHH--HH--HHHHHHHHHhhc--CC-hhhhHHHHHHHHHHHhhchh--hhhh-h-HhhHhHHHHHhhcCC-chHHH
Q 003195 428 LKYATPS--QA--QKLIEETAALHI--DD-KNSQISCAILLKSYSSVASD--VLSG-Y-HAVIVPVIFISRFED-DKYVS 495 (840)
Q Consensus 428 ~~~~~~~--~~--~~li~~l~~~~~--~d-~~~r~~~~~~i~ai~~~~~~--~f~~-~-~~~llP~l~~~~~d~-d~~vr 495 (840)
....+.. .+ ...++.+++.+. ++ ++.+..++.+++.++...++ .... . ....+|.+.....++ ++.++
T Consensus 291 ~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~ 370 (644)
T 2z6h_A 291 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI 370 (644)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHH
T ss_pred HcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHH
Confidence 7643211 11 123555665553 23 67888889999998754332 1111 1 123566665555544 45777
Q ss_pred HHHHHHHHHhcCCChhhHHhh-HHHHHHHHHhhhcCCC----------------------HHHHHHHHHHHHHHHHHhCc
Q 003195 496 DLFEELWEENTSGDRVTLQLY-LGEIVSLICEGIASSS----------------------WSSKRKSAKAICKLGEILGE 552 (840)
Q Consensus 496 ~~~~~i~~~~~~~~~~~i~~y-l~~Il~~l~~~L~d~s----------------------~~vR~~Aa~~L~~La~~~~~ 552 (840)
.....+...+..+.... ... -..+++.+.+.+.+.+ .+++..+..+|..++..-
T Consensus 371 ~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~-- 447 (644)
T 2z6h_A 371 KATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV-- 447 (644)
T ss_dssp HHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH--
T ss_pred HHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH--
Confidence 66555555554432111 111 1234555555555433 455666667777666422
Q ss_pred chhhh--HHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhc--ccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHH
Q 003195 553 SLSNY--HHVLLESIMKEVPGRLWEGKDALLYAIGSISTSC--HKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSC 628 (840)
Q Consensus 553 ~l~~~--l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~--~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~ 628 (840)
..... -...+|.|++.+.+...+.+..+..+|..++..- ...+.. ...++.+.+.+++.+..+|..|..+
T Consensus 448 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~------~g~l~~L~~ll~~~~~~vr~~A~~a 521 (644)
T 2z6h_A 448 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA------EGATAPLTELLHSRNEGVATYAAAV 521 (644)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHH------TTCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHH------cCChhHHHHHHcCCCHHHHHHHHHH
Confidence 11111 1346788888888888888988888888876420 001100 1124466777778899999999999
Q ss_pred HHHHHHHc
Q 003195 629 LEQVIKAF 636 (840)
Q Consensus 629 L~~l~~~~ 636 (840)
|+.+...-
T Consensus 522 L~~l~~~~ 529 (644)
T 2z6h_A 522 LFRMSEDK 529 (644)
T ss_dssp HHHHTTTS
T ss_pred HHHHhccC
Confidence 99987643
No 37
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.46 E-value=3.5e-09 Score=131.15 Aligned_cols=547 Identities=11% Similarity=0.088 Sum_probs=318.9
Q ss_pred HHHHhhh---cCCchHHHHHHHHhccccchhhhhhHHhHHHHHH----HHhh------------------hhhchh-hhh
Q 003195 63 LCNLANE---MGQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIA----KQAG------------------DALKPH-LRL 116 (840)
Q Consensus 63 l~~lA~~---~g~p~lv~~fm~la~~~~~w~sr~gA~~~l~~I~----~~~~------------------~~l~~~-l~~ 116 (840)
|..++.. -+||+++..++.+.+.+. .+ .+...+-.|+ +... +.|... ++.
T Consensus 114 la~l~~~~~p~~Wp~~i~~l~~~~~~~~---~~-~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~ 189 (980)
T 3ibv_A 114 LTLLFLQLYPSNWNDFFASLQGVIAASS---QS-EFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSD 189 (980)
T ss_dssp HHHHHHHHTTTTCTTHHHHHHHHHHHHC---CH-HHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHhCcccCchHHHHHHHHhcCCC---hh-HHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHH
Confidence 4444443 488999999998875432 11 2333333333 4321 111111 333
Q ss_pred HHHHHH----hhcCCCCHhHHHHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCch
Q 003195 117 LIPKLV----RFQYDPDKNVQDAMAHIWKSLVADPK-RTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFD 191 (840)
Q Consensus 117 lvP~L~----~~~~Dp~~~VR~a~~~iw~~Lv~d~~-~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~ 191 (840)
+++..+ .|...+++.++..+.++++..++-.+ ..+-+ +.+++.++..+.+ ..+|.+||.+|.+++.....+
T Consensus 190 i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~--~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~ 265 (980)
T 3ibv_A 190 IVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVN--EPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKP 265 (980)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC--HHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhc--chHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCCh
Confidence 444444 33344788999999999998887432 22211 5788888888876 689999999999999864322
Q ss_pred h-hhHHHHHH-HHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHhhhccc--ccc---chHHhHHHhHHHHHHhcccCC
Q 003195 192 Q-VGKHLRRI-WTAAFRAMD--DIKETVRTAGDKLCRSVTSLTIRLCDVTL--TEI---SDARQSMDIVLPFLLAEGILS 262 (840)
Q Consensus 192 ~-l~~~L~~l-~~~l~~~ld--D~~~~VR~aA~~~~~~l~~~~ir~~~~~~--~~~---~~~~~~l~~lLP~Ll~~gL~s 262 (840)
. -.+.+..+ +...+..+. +....+++.-.+++..++...+.. +... ... ......+..++|.++. ....
T Consensus 266 ~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~-~~~~ 343 (980)
T 3ibv_A 266 LEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIR-YLSD 343 (980)
T ss_dssp HHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHH-HHTC
T ss_pred hhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHH-HhCC
Confidence 1 11111111 001111111 334455555556666666554444 2111 000 1223566778888874 3445
Q ss_pred chhHHHHHHHHHHHHHHHhh---------ccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhh
Q 003195 263 KVDSISKASIGVVMKLVKGA---------GIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISI 333 (840)
Q Consensus 263 ~~~evr~~al~~L~~la~~~---------g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~ 333 (840)
+++++-..++..|....... ...++|+++.|++.++..+.=.+... +..+....+++.+.+.|..+
T Consensus 344 ~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~-----~~~~~d~ed~~~F~e~Rk~l 418 (980)
T 3ibv_A 344 DYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQE-----WDDDPDSEEEAEFQEMRKKL 418 (980)
T ss_dssp SSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCC-----CCCCSSSSTHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccc-----cccccchhHHHHHHHHHHHH
Confidence 66788888888887777532 23467888888888888776433210 00000112334455566543
Q ss_pred ccCCcHHHHHHHHHhhcChhh-Hh----hHHHHHHHHHh--ccCCCchHhHHHHHHHHHHHHhcc------CccccHHHH
Q 003195 334 AKGSPMWDTLDLCINVVDTES-LD----QLVPHLARLVR--SGIGLNTRVGVASFISLLVQKIGM------DIKPYTSML 400 (840)
Q Consensus 334 ~~~s~l~eal~~~~~~~d~~~-l~----~lvp~L~~~lk--~~~~~~~r~~a~~~l~~L~~~~~~------~~~p~~~~l 400 (840)
. .+-+++..++.+. ++ .+.+.+.+.+. .+.+|+.+.+++-+++.++..+.. ...++.+.+
T Consensus 419 ~-------~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l 491 (980)
T 3ibv_A 419 K-------IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVL 491 (980)
T ss_dssp H-------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHH
T ss_pred H-------HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHH
Confidence 2 4666777777554 34 44455544442 123588888999998888765542 233566677
Q ss_pred HHHHHHhHh----hcCcHHHHHHHHHHHHHhhhcCC--HHHHHHHHHHHHH--hhc-CChhhhHHHHHHHHHHHhhchhh
Q 003195 401 LRLLFPVVK----EEKSAAAKRAFASACASVLKYAT--PSQAQKLIEETAA--LHI-DDKNSQISCAILLKSYSSVASDV 471 (840)
Q Consensus 401 L~~Ll~~l~----~d~~~~Vr~~a~~Alg~l~~~~~--~~~~~~li~~l~~--~~~-~d~~~r~~~~~~i~ai~~~~~~~ 471 (840)
++.+...+. ++.++.||..++..+|+..+... ++.+...++.+.. ... .++.+|..++.++..+++.++..
T Consensus 492 ~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~ 571 (980)
T 3ibv_A 492 SQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ 571 (980)
T ss_dssp HHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHH
Confidence 766666651 27899999999999999888753 2334444444443 222 24568899999999999998888
Q ss_pred hhhhHhhHhHHHHHhhc---C----Cc------hH---------HHHHHHHHHHHhc---CCChhhHHhhHHHHHHH---
Q 003195 472 LSGYHAVIVPVIFISRF---E----DD------KY---------VSDLFEELWEENT---SGDRVTLQLYLGEIVSL--- 523 (840)
Q Consensus 472 f~~~~~~llP~l~~~~~---d----~d------~~---------vr~~~~~i~~~~~---~~~~~~i~~yl~~Il~~--- 523 (840)
+.+|.+.++..+..... . ++ ++ -..+++.+ .-++ +........|+..+++-
T Consensus 572 L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eai-g~li~~~~~~~e~~~~~l~~ll~pl~~ 650 (980)
T 3ibv_A 572 VVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETV-GVLISSGNLTPEEQALYCDSLINALIG 650 (980)
T ss_dssp CSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHH-HHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHH-HHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 88887776643321111 1 11 11 11122211 1222 11122333455444433
Q ss_pred -HHhhhcCC----CHHH-HHHHHHHHHHHHHHhCcc------hhhhHHHHHHHHHHhcC--CCCchhHHHHHHHHHHHHH
Q 003195 524 -ICEGIASS----SWSS-KRKSAKAICKLGEILGES------LSNYHHVLLESIMKEVP--GRLWEGKDALLYAIGSIST 589 (840)
Q Consensus 524 -l~~~L~d~----s~~v-R~~Aa~~L~~La~~~~~~------l~~~l~~llp~L~~~l~--~r~~~~Ke~vl~aL~~l~~ 589 (840)
+.+.+... .... -+....++|.+++.+.+. +...+.++++.+...+. .+...+|+++..++.-++.
T Consensus 651 ~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~ 730 (980)
T 3ibv_A 651 KANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIIN 730 (980)
T ss_dssp HHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 44444322 1111 113456678888765432 33456778888877775 5667899999999999998
Q ss_pred hcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCc
Q 003195 590 SCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDP 639 (840)
Q Consensus 590 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~ 639 (840)
..+..+. |+++.++..++..++... -...+..++.++..++++
T Consensus 731 ~lg~~~~----p~lp~~i~~ll~~~~~~e---~~~fL~l~~qli~~f~~~ 773 (980)
T 3ibv_A 731 VVGPDML----PKVPQLISILLNSIDMNE---LVDVLSFISQLIHIYKDN 773 (980)
T ss_dssp TTHHHHT----TTHHHHHHHHHHHCCTTT---HHHHHHHHHHHHHHTTTT
T ss_pred HccHhHH----HHHHHHHHHHHhcCCHHH---HHHHHHHHHHHHHHHHHH
Confidence 8877665 899999999886543222 456789999999999885
No 38
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.46 E-value=1.4e-10 Score=134.32 Aligned_cols=432 Identities=9% Similarity=0.022 Sum_probs=255.6
Q ss_pred CchHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhh--hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChH
Q 003195 72 QPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHL--RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKR 149 (840)
Q Consensus 72 ~p~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l--~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~ 149 (840)
.+..+..++.+..+..+|..++.|+.+|..+.... + ....+ ...+|.|.++..++++.||..+..++..+..+...
T Consensus 57 ~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~-~-~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 134 (529)
T 1jdh_A 57 SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-E-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 134 (529)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH-H-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc-h-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcc
Confidence 34567777777655546888999998998876432 1 11111 25899999999999999999998888888765322
Q ss_pred HHHHHH-HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCch--hhhHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Q 003195 150 TIDEHL-DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFD--QVGKHLRRIWTAAFRAMDDI-KETVRTAGDKLCRS 225 (840)
Q Consensus 150 ~i~~~~-~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~--~l~~~L~~l~~~l~~~ldD~-~~~VR~aA~~~~~~ 225 (840)
...... ...++.|+..+.+++|++|..++.+|.++..+.+.. .+.. ...++.+.+.+.+. .+.++.++..++..
T Consensus 135 ~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~--~~~i~~L~~ll~~~~~~~~~~~a~~~L~~ 212 (529)
T 1jdh_A 135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA--SGGPQALVNIMRTYTYEKLLWTTSRVLKV 212 (529)
T ss_dssp HHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH--TTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHH--CCCHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 222222 347788888888999999999999999887643211 1111 13455566666544 34455566555555
Q ss_pred HHHHHHHhhhccccccchHHhHH-HhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCc
Q 003195 226 VTSLTIRLCDVTLTEISDARQSM-DIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSL 304 (840)
Q Consensus 226 l~~~~ir~~~~~~~~~~~~~~~l-~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ 304 (840)
++. ++ .....++ ...+|.|+. -+.+++.+++..++.+|.+++...... .....++|.|++.+.+.
T Consensus 213 l~~-----~~------~~~~~~~~~g~~~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~ 278 (529)
T 1jdh_A 213 LSV-----CS------SNKPAIVEAGGMQALGL-HLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSD 278 (529)
T ss_dssp HTT-----ST------THHHHHHHTTHHHHHHT-TTTSSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCS
T ss_pred Hhc-----Cc------ccHHHHHHCCCHHHHHH-HHhCCChHHHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHcCC
Confidence 431 11 0111122 246777763 355567889999999999999765432 23467899999999876
Q ss_pred hhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccC-CCchHhHHHHHHH
Q 003195 305 EDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGI-GLNTRVGVASFIS 383 (840)
Q Consensus 305 ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~-~~~~r~~a~~~l~ 383 (840)
.+.+.....+...+..... ++. ...+.+ ...+|.+++.+++.. ...++..|+.+|.
T Consensus 279 ~~~v~~~a~~~L~~L~~~~---~~~-------------~~~~~~-------~~~v~~L~~ll~~~~~~~~v~~~a~~~L~ 335 (529)
T 1jdh_A 279 DINVVTCAAGILSNLTCNN---YKN-------------KMMVCQ-------VGGIEALVRTVLRAGDREDITEPAICALR 335 (529)
T ss_dssp CHHHHHHHHHHHHHHTTTC---HHH-------------HHHHHH-------TTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCC---HHH-------------HHHHHH-------cCChHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 6665544333322211000 000 000110 125677777776532 2467788999998
Q ss_pred HHHHHhccC--cc-cc-HHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHH-HH--HHHHHHHHHhhc-CChhhhH
Q 003195 384 LLVQKIGMD--IK-PY-TSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS-QA--QKLIEETAALHI-DDKNSQI 455 (840)
Q Consensus 384 ~L~~~~~~~--~~-p~-~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~-~~--~~li~~l~~~~~-~d~~~r~ 455 (840)
.|+...+.. .. .. ....++.++..+.++.+..+++.++.+++.+....... .+ ...++.+.+.+. ++++.|.
T Consensus 336 nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~ 415 (529)
T 1jdh_A 336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 415 (529)
T ss_dssp HHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-
T ss_pred HHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHH
Confidence 886432210 00 00 11346778888833334699999999999988532211 11 134555555543 2233333
Q ss_pred ----------------------HHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhH
Q 003195 456 ----------------------SCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTL 513 (840)
Q Consensus 456 ----------------------~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i 513 (840)
.+..++..++........-.-...+|.+.....+.+++++......+..+... + ..
T Consensus 416 ~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~-~-~~ 493 (529)
T 1jdh_A 416 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-K-EA 493 (529)
T ss_dssp ----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-H-HH
T ss_pred HHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC-H-HH
Confidence 33344444443211110001123556666667788888988766666555432 1 12
Q ss_pred HhhH--HHHHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 003195 514 QLYL--GEIVSLICEGIASSSWSSKRKSAKAICKL 546 (840)
Q Consensus 514 ~~yl--~~Il~~l~~~L~d~s~~vR~~Aa~~L~~L 546 (840)
...+ ...++.+.+.+.|++.++|+.|..+|..+
T Consensus 494 ~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 494 AEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 2222 23467788889999999999999999865
No 39
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.45 E-value=1.1e-10 Score=141.83 Aligned_cols=441 Identities=9% Similarity=0.003 Sum_probs=264.7
Q ss_pred CchHHHHHHHHhccccchhhhhhHHhHHHHHHHHhh--hhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChH
Q 003195 72 QPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAG--DALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKR 149 (840)
Q Consensus 72 ~p~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~--~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~ 149 (840)
.+..+..++.+..+..+...|+.|+.+|..+..... +.+.. ...+|.|..+..++++.||..+..++..|..+...
T Consensus 190 ~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~--~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~ 267 (780)
T 2z6g_A 190 SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFK--SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG 267 (780)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChh
Confidence 346677777766544456788888888888654321 11111 25899999999999999999999998888865433
Q ss_pred HHHHHH-HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHH
Q 003195 150 TIDEHL-DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKE-TVRTAGDKLCRSVT 227 (840)
Q Consensus 150 ~i~~~~-~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~-~VR~aA~~~~~~l~ 227 (840)
...... ..+++.|+..+.+.++++|+.++.++..+..+.......-.-...++.+++.+.+... .++..+..++..++
T Consensus 268 ~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls 347 (780)
T 2z6g_A 268 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 347 (780)
T ss_dssp HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 333222 3577888888888999999999999987765321111000011345666666765543 44556656655553
Q ss_pred HHHHHhhhccccccchHHhHH-HhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchh
Q 003195 228 SLTIRLCDVTLTEISDARQSM-DIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLED 306 (840)
Q Consensus 228 ~~~ir~~~~~~~~~~~~~~~l-~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep 306 (840)
. +.. ....++ ..++|.|+. -+.+.+.+++..++.+|.+++...... .....++|.|++.+.+..+
T Consensus 348 ~-----~~~------~~~~i~~~g~l~~Ll~-lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~ 413 (780)
T 2z6g_A 348 V-----CSS------NKPAIVEAGGMQALGL-HLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDI 413 (780)
T ss_dssp T-----STT------HHHHHHHTTHHHHHGG-GTTCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCH
T ss_pred c-----ChH------HHHHHHHhchHHHHHH-HHcCCchHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCH
Confidence 1 110 111222 246777764 255566789999999999999765442 2346789999999987666
Q ss_pred HhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCC-chHhHHHHHHHHH
Q 003195 307 QGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGL-NTRVGVASFISLL 385 (840)
Q Consensus 307 ~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~-~~r~~a~~~l~~L 385 (840)
.++...++...+.....+ ..+ ..++ + ...+|.|++.+.+..+. .+|..|+.+|+.|
T Consensus 414 ~vr~~A~~aL~~L~~~~~---~~~-------------~~i~---~----~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL 470 (780)
T 2z6g_A 414 NVVTCAAGILSNLTCNNY---KNK-------------MMVC---Q----VGGIEALVRTVLRAGDREDITEPAICALRHL 470 (780)
T ss_dssp HHHHHHHHHHHHHTSSCH---HHH-------------HHHH---T----TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCH---HHH-------------HHHH---H----CCCHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 655444333322110000 000 0000 0 13567777777664333 6788899999887
Q ss_pred HHHhccC--cc-c-cHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHH-HH--HHHHHHHHHhhcC---------
Q 003195 386 VQKIGMD--IK-P-YTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS-QA--QKLIEETAALHID--------- 449 (840)
Q Consensus 386 ~~~~~~~--~~-p-~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~-~~--~~li~~l~~~~~~--------- 449 (840)
+...+.. .. . .....++.|+..+..+....||+.++.+++.+....... .+ ...++.+.+.+..
T Consensus 471 ~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a 550 (780)
T 2z6g_A 471 TSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 550 (780)
T ss_dssp TSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHH
Confidence 5432210 00 0 012347778888843344699999999999998521111 01 1234444444321
Q ss_pred --------------ChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHh
Q 003195 450 --------------DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQL 515 (840)
Q Consensus 450 --------------d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~ 515 (840)
+++.+..++.+++.++........-.-...+|.+.....+.+++++.....++..+... ...+.
T Consensus 551 a~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~--~~~~~ 628 (780)
T 2z6g_A 551 SMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAE 628 (780)
T ss_dssp C------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS--HHHHH
T ss_pred hhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--HHHHH
Confidence 13345566777777764321111111133566666667778888887766665554432 22333
Q ss_pred hHHH--HHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcc
Q 003195 516 YLGE--IVSLICEGIASSSWSSKRKSAKAICKLGEILGES 553 (840)
Q Consensus 516 yl~~--Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~ 553 (840)
.+.+ .++.+.+.+.+.+.++|+.|+.+|..++...+..
T Consensus 629 ~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~ 668 (780)
T 2z6g_A 629 AIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD 668 (780)
T ss_dssp HHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHh
Confidence 3333 5777888899999999999999999999765543
No 40
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.44 E-value=3.4e-11 Score=149.20 Aligned_cols=360 Identities=14% Similarity=0.173 Sum_probs=229.0
Q ss_pred cchHH---HHHHHhhhcCCchHHHHHHHHhc----c-ccchhhhhhHHhHHHHHHHHhhh-hhchhhhhHHHHHHhhcC-
Q 003195 57 LSTYK---ELCNLANEMGQPDLIYKFMDLAN----Y-QVSLNSKRGAAFGFSKIAKQAGD-ALKPHLRLLIPKLVRFQY- 126 (840)
Q Consensus 57 ~styk---~l~~lA~~~g~p~lv~~fm~la~----~-~~~w~sr~gA~~~l~~I~~~~~~-~l~~~l~~lvP~L~~~~~- 126 (840)
+..|| +.......+..++++..+++... + +..|..|+++.|+||+|+++..+ ..++++++++|.|+....
T Consensus 427 ~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~ 506 (1023)
T 4hat_C 427 IQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVK 506 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhc
Confidence 44553 33333444555577766666432 2 34699999999999999998754 477999999999999886
Q ss_pred ----CCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCch-------hhhH
Q 003195 127 ----DPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFD-------QVGK 195 (840)
Q Consensus 127 ----Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~-------~l~~ 195 (840)
|+.+.||.+++-+.+....-. ..-.+++++++..|++++.++.++|.++||.||..|.+.+... +..|
T Consensus 507 ~~~~d~k~~v~~t~~~~lGry~~wl-~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p 585 (1023)
T 4hat_C 507 KRGKDNKAVVASDIMYVVGQYPRFL-KAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEP 585 (1023)
T ss_dssp CCSHHHHHHHHHHHHHHHHTCHHHH-HHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSC
T ss_pred cccCcchHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCch
Confidence 688889988766665543211 1124579999999999999989999999999999999865422 3368
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhc--ccC----------Cc
Q 003195 196 HLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAE--GIL----------SK 263 (840)
Q Consensus 196 ~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~--gL~----------s~ 263 (840)
|+++|+..+..+.++.+..-+..+..++..+ ++.... ...-..+++.++|.+.++ .+. .+
T Consensus 586 ~~~~il~~l~~~~~~l~~~~~~~lyeai~~v----i~~~~~----~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d 657 (1023)
T 4hat_C 586 FIQTIIRDIQKTTADLQPQQVHTFYKACGII----ISEERS----VAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLD 657 (1023)
T ss_dssp HHHHHHHTHHHHHTTSCHHHHHHHHHHHHHH----HTTCCS----HHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGC
T ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----HHhCCC----HhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcC
Confidence 9999999999998887776666655555554 222221 112345677777766541 111 11
Q ss_pred hhHHHH--HHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccch---hhhHHHHHhhccCCc
Q 003195 264 VDSISK--ASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQT---EKLENLRISIAKGSP 338 (840)
Q Consensus 264 ~~evr~--~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~---~~~d~~R~~~~~~s~ 338 (840)
.+.++. ..+.++..+++..|..+.|++..+.+.+++.......- +.......|... ...-..|. ++. .
T Consensus 658 ~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~----i~~~~~~~g~~~~~~~~~r~~r~--ik~-~ 730 (1023)
T 4hat_C 658 SETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSM----ISAQVAAEGLIATKTPKVRGLRT--IKK-E 730 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCGGGGGSHHHHHHHH--HHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhCCchhhccHHHHHHHH--HHH-H
Confidence 122333 23788889999999999999999999998765422111 111111111100 11111121 100 0
Q ss_pred HHHHHHHHHhhcC-hh-hHhhHHHHHHHHH----hccCCCchH-hHHHHHHHHHHHHhccCccccHHHHHHHHHH----h
Q 003195 339 MWDTLDLCINVVD-TE-SLDQLVPHLARLV----RSGIGLNTR-VGVASFISLLVQKIGMDIKPYTSMLLRLLFP----V 407 (840)
Q Consensus 339 l~eal~~~~~~~d-~~-~l~~lvp~L~~~l----k~~~~~~~r-~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~----~ 407 (840)
+...++.++...+ .+ +...++|.+++.+ ++.. ...| .+.+.+.+.++.++|..+.|.++.++..++. .
T Consensus 731 il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~-~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~m 809 (1023)
T 4hat_C 731 ILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNV-PDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDM 809 (1023)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSC-GGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCC-hhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 1223334443332 22 2445566665544 2221 1123 3678888899999999999999988888753 3
Q ss_pred Hh--hcCcHHHHHHHHHHHHHhhhcCCH
Q 003195 408 VK--EEKSAAAKRAFASACASVLKYATP 433 (840)
Q Consensus 408 l~--~d~~~~Vr~~a~~Alg~l~~~~~~ 433 (840)
+. .+.+++.|..+..=+..+...+..
T Consensus 810 i~~~~~~~Pe~r~~ff~ll~~~~~~~f~ 837 (1023)
T 4hat_C 810 INKDFTEYPEHRVEFYKLLKVINEKSFA 837 (1023)
T ss_dssp HSSCSSSSHHHHHHHHHHHHHHHHHCTH
T ss_pred HhcccccChHHHHHHHHHHHHHHHHChH
Confidence 31 136799999999888888777654
No 41
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.44 E-value=2.2e-10 Score=135.66 Aligned_cols=400 Identities=11% Similarity=0.023 Sum_probs=251.8
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003195 158 IFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVT 237 (840)
Q Consensus 158 Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~ 237 (840)
...++++.+.+++...|+.+-.++..++...+ +...-.+..+.+-+.|.++.+|..|.+++..++
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~-----e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---------- 135 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQ-----DVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---------- 135 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC----------
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC----------
Confidence 33445567778899999999998888875431 223345566777789999999998866665542
Q ss_pred ccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhh
Q 003195 238 LTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAA 317 (840)
Q Consensus 238 ~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~ 317 (840)
..++.+.++|.+. +.+.++++.||..|+.++.++.+..++.+. .+++.+...+.+..|.++.....
T Consensus 136 ------~~~~~~~l~~~l~-~~L~~~~~~VRk~A~~al~~l~~~~p~~v~----~~~~~l~~lL~D~d~~V~~~Al~--- 201 (618)
T 1w63_A 136 ------SSEMCRDLAGEVE-KLLKTSNSYLRKKAALCAVHVIRKVPELME----MFLPATKNLLNEKNHGVLHTSVV--- 201 (618)
T ss_dssp ------CHHHHHHHHHHHH-HHHHSCCHHHHHHHHHHHHHHHHHCGGGGG----GGGGGTTTSTTCCCHHHHHHHHH---
T ss_pred ------CHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHChHHHH----HHHHHHHHHhCCCCHhHHHHHHH---
Confidence 1235566777775 357778899999999999999987665443 34555666677666655432111
Q ss_pred hcccchhhhHHHHHhhccCCcHHHHHHHHHhhcC--hhhHhhHHHHHHHHHhcc-------------C-CCchHhHHHHH
Q 003195 318 NAGIQTEKLENLRISIAKGSPMWDTLDLCINVVD--TESLDQLVPHLARLVRSG-------------I-GLNTRVGVASF 381 (840)
Q Consensus 318 ~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d--~~~l~~lvp~L~~~lk~~-------------~-~~~~r~~a~~~ 381 (840)
++..+...-. ...+..++|.+.+.+++- . +.-.+...+++
T Consensus 202 ------------------------~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~ 257 (618)
T 1w63_A 202 ------------------------LLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRL 257 (618)
T ss_dssp ------------------------HHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHH
T ss_pred ------------------------HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHH
Confidence 1111111100 012345566666665531 0 11224445555
Q ss_pred HHHHHHHhccCccccHHHHHHHHHHhHh-----hcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc-CChhhhH
Q 003195 382 ISLLVQKIGMDIKPYTSMLLRLLFPVVK-----EEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQI 455 (840)
Q Consensus 382 l~~L~~~~~~~~~p~~~~lL~~Ll~~l~-----~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~-~d~~~r~ 455 (840)
+..++...+ ...+.+++.+...+. .+.+.+|.-+++.++..+.. .+......++.+...+. .|++.|.
T Consensus 258 L~~l~~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~--~~~l~~~a~~~L~~~L~~~d~~vr~ 331 (618)
T 1w63_A 258 LRILGRNDD----DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS--ESGLRVLAINILGRFLLNNDKNIRY 331 (618)
T ss_dssp HHHHTTTCH----HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHTCSSTTTHH
T ss_pred HHHhCCCCH----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhCCCCchHH
Confidence 555432211 112233333333221 12355788888888876532 23333334455555554 5788999
Q ss_pred HHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHH
Q 003195 456 SCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSS 535 (840)
Q Consensus 456 ~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~v 535 (840)
.+...++.++...++.|.+|...+++ ...|++.++|....++...++... . +..|++-+.+++.+.+.++
T Consensus 332 ~aL~~L~~i~~~~p~~~~~~~~~i~~----~l~d~d~~Ir~~alelL~~l~~~~--n----v~~iv~eL~~~l~~~d~e~ 401 (618)
T 1w63_A 332 VALTSLLKTVQTDHNAVQRHRSTIVD----CLKDLDVSIKRRAMELSFALVNGN--N----IRGMMKELLYFLDSCEPEF 401 (618)
T ss_dssp HHHHHHHHHHHHHHHHHGGGHHHHHH----GGGSSCHHHHHHHHHHHHHHCCSS--S----THHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHH----HccCCChhHHHHHHHHHHHHcccc--c----HHHHHHHHHHHHHhCCHHH
Confidence 99999999998888888777765554 457888999988878877776542 2 3445566666677788999
Q ss_pred HHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHh
Q 003195 536 KRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACR 615 (840)
Q Consensus 536 R~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 615 (840)
|+.+..+|+.+|..++.....+++.++..|...- ..++..++.++..++.... .....++..+.+.+.
T Consensus 402 r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~----~~v~~~~~~~l~~ii~~~p--------~l~~~~v~~L~~~l~ 469 (618)
T 1w63_A 402 KADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAG----SYVRDDAVPNLIQLITNSV--------EMHAYTVQRLYKAIL 469 (618)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTG----GGSCSSHHHHHHHHHHHSC--------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhcc----chhHHHHHHHHHHHHhcCh--------hHHHHHHHHHHHHHh
Confidence 9999999999999987777777777775554432 2345567778888876543 223445666666554
Q ss_pred h--cCHHHHHHHHHHHHHHHHHcCC
Q 003195 616 K--KIKKYREAAFSCLEQVIKAFRD 638 (840)
Q Consensus 616 ~--~~~~~R~~Al~~L~~l~~~~~~ 638 (840)
+ ......+.+++++|++...+.+
T Consensus 470 ~~~~~~~~~~~~~wilGEy~~~i~~ 494 (618)
T 1w63_A 470 GDYSQQPLVQVAAWCIGEYGDLLVS 494 (618)
T ss_dssp HCCSCSHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHHhhhHHHhcc
Confidence 3 2334455799999999887643
No 42
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.41 E-value=7.7e-10 Score=137.18 Aligned_cols=421 Identities=10% Similarity=0.084 Sum_probs=251.5
Q ss_pred hhchhhhhHHHHHHhhcCCCC---------Hh-HH------------HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh
Q 003195 109 ALKPHLRLLIPKLVRFQYDPD---------KN-VQ------------DAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQS 166 (840)
Q Consensus 109 ~l~~~l~~lvP~L~~~~~Dp~---------~~-VR------------~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l 166 (840)
.+.|++.++++.|++.+.=|. .. || +.+-++...+..- ..++.++.+++.+.+.+
T Consensus 384 ~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l---~~~~~~~~~~~~l~~~l 460 (1023)
T 4hat_C 384 IYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHL---NVIDTEEIMISKLARQI 460 (1023)
T ss_dssp GGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHh
Confidence 467888899999987766553 00 01 0122222222110 01233444555555555
Q ss_pred CC--CChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 003195 167 GS--RLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMD-----DIKETVRTAGDKLCRSVTSLTIRLCDVTLT 239 (840)
Q Consensus 167 ~~--~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ld-----D~~~~VR~aA~~~~~~l~~~~ir~~~~~~~ 239 (840)
.+ .+|+.||++|.|++.+.++...+...++++++++.++..++ |.+..||..+.-++....+|+.
T Consensus 461 ~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~-------- 532 (1023)
T 4hat_C 461 DGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLK-------- 532 (1023)
T ss_dssp SSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHH--------
T ss_pred cCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHh--------
Confidence 43 68999999999999999988877788999999999999887 5777788776556666666652
Q ss_pred ccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhcccc--------ccchHHHHHHHHHhccCchhHhHHH
Q 003195 240 EISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAI--------RPHLSDLVSCMLESLSSLEDQGLNY 311 (840)
Q Consensus 240 ~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l--------~p~lp~Lv~~Ll~~ls~~ep~~~~~ 311 (840)
.....++.++++|++ |+.++.+.|+..|++++..+++.|+..+ .||+++++..+.+.+...++....
T Consensus 533 ---~~~~~L~~vl~~L~~-~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~- 607 (1023)
T 4hat_C 533 ---AHWNFLRTVILKLFE-FMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVH- 607 (1023)
T ss_dssp ---HCHHHHHHHHHHHHH-HTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHH-
T ss_pred ---ccHHHHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHH-
Confidence 123467888888884 7877778899999999999999988765 589999999888887755443221
Q ss_pred HHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChh-----hHhhHHHHHHHHHhc-------cCC-C----ch
Q 003195 312 IELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTE-----SLDQLVPHLARLVRS-------GIG-L----NT 374 (840)
Q Consensus 312 l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~-----~l~~lvp~L~~~lk~-------~~~-~----~~ 374 (840)
.+++|+..++..+..+ .++.+++.+.+.++. ... + ..
T Consensus 608 --------------------------~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~ 661 (1023)
T 4hat_C 608 --------------------------TFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETV 661 (1023)
T ss_dssp --------------------------HHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHH
T ss_pred --------------------------HHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHH
Confidence 1345566666555422 233334333333221 101 1 01
Q ss_pred H-h-HHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCChh
Q 003195 375 R-V-GVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKN 452 (840)
Q Consensus 375 r-~-~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~d~~ 452 (840)
+ . ..+++++.++...|..|.||++.+.+.++.... --+..+.+. +..-|..+...+ ..+.+. .
T Consensus 662 ~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~-~~s~~i~~~-~~~~g~~~~~~~---~~r~~r----------~ 726 (1023)
T 4hat_C 662 KIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYR-AVSSMISAQ-VAAEGLIATKTP---KVRGLR----------T 726 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHCGGGGGSH---HHHHHH----------H
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHhCCchhhccH---HHHHHH----------H
Confidence 1 1 356778888899999999999999988877762 111112111 111122111000 000000 0
Q ss_pred hhHHHHHHHHHHHhhchh-------hhhhhHhhHhHHHHHhhcC---CchHHHHHHHHHHHHhcCCChhhHHhhHHHHHH
Q 003195 453 SQISCAILLKSYSSVASD-------VLSGYHAVIVPVIFISRFE---DDKYVSDLFEELWEENTSGDRVTLQLYLGEIVS 522 (840)
Q Consensus 453 ~r~~~~~~i~ai~~~~~~-------~f~~~~~~llP~l~~~~~d---~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~ 522 (840)
.|..+..++..+...+.+ ...+.++.++.- |. .+. .++++-.++.-+.+.+.. .+.++++.|++
T Consensus 727 ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~d-Y~-~~~~~~r~~~vL~l~s~iv~~~~~----~~~~~~~~il~ 800 (1023)
T 4hat_C 727 IKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLED-YM-NNVPDARDAEVLNCMTTVVEKVGH----MIPQGVILILQ 800 (1023)
T ss_dssp HHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHH-HH-HSCGGGCCHHHHHHHHHHHHHHGG----GCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHH-HH-hCChhhccHHHHHHHHHHHHHHHH----hhhhhhHHHHH
Confidence 122222333333222211 011222222211 11 111 345555555555555433 34555666665
Q ss_pred HHH----hhhcC---CCHHHHHHHHHHHHHHHHHhCcchhh----hHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhc
Q 003195 523 LIC----EGIAS---SSWSSKRKSAKAICKLGEILGESLSN----YHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSC 591 (840)
Q Consensus 523 ~l~----~~L~d---~s~~vR~~Aa~~L~~La~~~~~~l~~----~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~ 591 (840)
.+. +.+++ ..++.|..=++.+..+.......+-. ..+.++..++-+++....+.-+..+..+..++.+.
T Consensus 801 ~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~ 880 (1023)
T 4hat_C 801 SVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNI 880 (1023)
T ss_dssp HHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHH
Confidence 543 33443 57999999999999999988764432 46778888888888888888888898888888766
Q ss_pred c
Q 003195 592 H 592 (840)
Q Consensus 592 ~ 592 (840)
.
T Consensus 881 ~ 881 (1023)
T 4hat_C 881 E 881 (1023)
T ss_dssp H
T ss_pred H
Confidence 5
No 43
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.40 E-value=1.4e-09 Score=129.92 Aligned_cols=469 Identities=11% Similarity=0.031 Sum_probs=288.5
Q ss_pred HHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhh--hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHH
Q 003195 75 LIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHL--RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTID 152 (840)
Q Consensus 75 lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l--~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~ 152 (840)
.+-.|+...-.......+--|+-++..|+.+..+.-...+ ...+|.|+.....+++.+|+.+..++.....++ ...+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~-~~R~ 325 (810)
T 3now_A 247 QIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKK-DKAK 325 (810)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSH-HHHH
T ss_pred HHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCc-HHHH
Confidence 4445554321111233444567788888877644322211 257777888889999999999999998888773 3222
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccC----Cchhhh-HHHHHHHHHHHHHhccc--cHHHHHHHHHHHHH
Q 003195 153 EHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGR----KFDQVG-KHLRRIWTAAFRAMDDI--KETVRTAGDKLCRS 225 (840)
Q Consensus 153 ~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~----~~~~l~-~~L~~l~~~l~~~ldD~--~~~VR~aA~~~~~~ 225 (840)
...+.-.+-|...+.+++.++|.-|..+|..+-... +.+.+. .-+..+++.+.+.+.+. ...+|+.|...+..
T Consensus 326 ~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLay 405 (810)
T 3now_A 326 ALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAY 405 (810)
T ss_dssp TTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 112222255555556777889998888998886421 112232 34678888888888766 66788887666665
Q ss_pred HHHHHHHhhhccccccchHHhHH--HhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhcc--------ccccc------
Q 003195 226 VTSLTIRLCDVTLTEISDARQSM--DIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGI--------AIRPH------ 289 (840)
Q Consensus 226 l~~~~ir~~~~~~~~~~~~~~~l--~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~--------~l~p~------ 289 (840)
++. ++. .-..+. ...+|.|++- +.+++..++..++.+|++++..... .+..|
T Consensus 406 LS~------~~~-----vk~~lv~d~g~Ip~LV~L-L~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~ 473 (810)
T 3now_A 406 LTL------DAE-----CKEKLIEDKASIHALMDL-ARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIP 473 (810)
T ss_dssp HTT------SHH-----HHHHHHHCHHHHHHHHHH-HHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCC
T ss_pred HhC------CcH-----HHHHHHHccchHHHHHHH-hCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCc
Confidence 531 000 011111 2456666631 3345668899999999999974310 01111
Q ss_pred ----------hH---------HHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhc
Q 003195 290 ----------LS---------DLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVV 350 (840)
Q Consensus 290 ----------lp---------~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~ 350 (840)
.. ..+|.|.+.+++..|.+.....|. +..+..
T Consensus 474 ~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~a---------------------------L~NLA~-- 524 (810)
T 3now_A 474 EEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARV---------------------------LNAVCG-- 524 (810)
T ss_dssp CSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHH---------------------------HHHHHT--
T ss_pred cccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHH---------------------------HHHHcC--
Confidence 00 256777777766555443322222 222221
Q ss_pred Chh----hH-hhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccC--cccc-HHHHHHHHHHhHhhcCcHHHHHHHHH
Q 003195 351 DTE----SL-DQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMD--IKPY-TSMLLRLLFPVVKEEKSAAAKRAFAS 422 (840)
Q Consensus 351 d~~----~l-~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~--~~p~-~~~lL~~Ll~~l~~d~~~~Vr~~a~~ 422 (840)
+.+ +. ...+|.|+..++++ ....|..|+.+|..|+...... |..+ ....++.|+..|..+.+...+..++.
T Consensus 525 d~~~r~~Vv~~Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~ 603 (810)
T 3now_A 525 LKELRGKVVQEGGVKALLRMALEG-TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLM 603 (810)
T ss_dssp SHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHH
Confidence 111 01 23678888888775 4456888999999987653221 2111 23478888888844445556678899
Q ss_pred HHHHhhhcCCHHHHH-----HHHHHHHHhhc-CChhhhHHHHHHHHHHHhhchhhhhhhH--hhHhHHHHHhhcCCchHH
Q 003195 423 ACASVLKYATPSQAQ-----KLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYH--AVIVPVIFISRFEDDKYV 494 (840)
Q Consensus 423 Alg~l~~~~~~~~~~-----~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~--~~llP~l~~~~~d~d~~v 494 (840)
|+.++.... ++... ..++.+.+++. +++..|..++.+++.++.. ++....+. ...+|.+......++.++
T Consensus 604 AL~NLa~~~-d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~v 681 (810)
T 3now_A 604 ALTNLASMN-ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDEET 681 (810)
T ss_dssp HHHHHTTSC-HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSHHH
T ss_pred HHHHHhcCC-HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCHHH
Confidence 999998654 22221 34566777664 4678899999999998763 33333333 236776666666677788
Q ss_pred HHHHHHHHHHhcCCChhhHHhhHH--HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHHHHHhcC
Q 003195 495 SDLFEELWEENTSGDRVTLQLYLG--EIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH--HVLLESIMKEVP 570 (840)
Q Consensus 495 r~~~~~i~~~~~~~~~~~i~~yl~--~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l--~~llp~L~~~l~ 570 (840)
+.....++..+..+.+...+..+. ..++.+...+.+.+.++|+.|+.+|+.++... .....++ ...+|.|.+-++
T Consensus 682 q~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s-~e~~~~l~e~G~i~~L~~LL~ 760 (810)
T 3now_A 682 ATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG-EEIAKKLFETDIMELLSGLGQ 760 (810)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC-HHHHHHHHTSTHHHHHTTSCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHHh
Confidence 876666665665543344444443 57888889999999999999999999998732 2222221 346788888875
Q ss_pred C---CCchhHHHHHHHHHHHHH
Q 003195 571 G---RLWEGKDALLYAIGSIST 589 (840)
Q Consensus 571 ~---r~~~~Ke~vl~aL~~l~~ 589 (840)
. +.....+.++++|..+..
T Consensus 761 ~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 761 LPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp CTTSTTHHHHHHHHHHHHHHHH
T ss_pred CcccCcHHHHHHHHHHHHHHHh
Confidence 4 356788889999888875
No 44
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.39 E-value=2.6e-09 Score=126.13 Aligned_cols=467 Identities=11% Similarity=0.033 Sum_probs=294.6
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhH
Q 003195 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGK 195 (840)
Q Consensus 116 ~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~ 195 (840)
.+.+...+.+.+++...|+...-.|..+....++ ...-+...+.+.+.|++.-+|-.|..+++.+.. ..
T Consensus 74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e----~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-------~e 142 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSE----LIRLINNAIKNDLASRNPTFMGLALHCIANVGS-------RE 142 (621)
T ss_dssp SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHH----HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-------HH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcH----HHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC-------HH
Confidence 4567777778999999999999999988865433 334455667778889999999999999999832 33
Q ss_pred HHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHH--hHHHHHHhcccCCchhHHHHHH
Q 003195 196 HLRRIWTAAFRAM--DDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMD--IVLPFLLAEGILSKVDSISKAS 271 (840)
Q Consensus 196 ~L~~l~~~l~~~l--dD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~--~lLP~Ll~~gL~s~~~evr~~a 271 (840)
+.+.+.+.+.+++ .|.++.||+.|.-++..+.+. .+. .+. .+++.|.. -+.+++..|+..+
T Consensus 143 ~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~-----~p~---------~~~~~~~~~~l~~-lL~d~d~~V~~~a 207 (621)
T 2vgl_A 143 MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT-----SPD---------LVPMGDWTSRVVH-LLNDQHLGVVTAA 207 (621)
T ss_dssp HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH-----CGG---------GCCCCSCHHHHHH-HTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-----Chh---------hcCchhHHHHHHH-HhCCCCccHHHHH
Confidence 5668888889999 999999999887776666432 211 122 34555542 3555677899999
Q ss_pred HHHHHHHHHhhccccccchHHHHHHHHHhccC--c-----------hhHhHHHHHHhhhhcccchh-h-hH---H-H-HH
Q 003195 272 IGVVMKLVKGAGIAIRPHLSDLVSCMLESLSS--L-----------EDQGLNYIELHAANAGIQTE-K-LE---N-L-RI 331 (840)
Q Consensus 272 l~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~--~-----------ep~~~~~l~~~a~~~~~~~~-~-~d---~-~-R~ 331 (840)
+.++..++...+..+.+++|.++..|-+.+.. . .||..-.+-.....+...++ . .+ + . +.
T Consensus 208 ~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~i 287 (621)
T 2vgl_A 208 TSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETI 287 (621)
T ss_dssp HHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 99999999887777888888888877766532 1 35543333333333332111 1 00 0 0 00
Q ss_pred --hh-------------ccCCcHHHHHHHHHhhc-ChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccc
Q 003195 332 --SI-------------AKGSPMWDTLDLCINVV-DTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKP 395 (840)
Q Consensus 332 --~~-------------~~~s~l~eal~~~~~~~-d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p 395 (840)
.+ ...+-+++++..++..- +.+.+...+..|...+.++ +.+.|-.+++.+..++...+. .+
T Consensus 288 l~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~--~~ 364 (621)
T 2vgl_A 288 LNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS--HE 364 (621)
T ss_dssp HHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT--HH
T ss_pred HHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc--HH
Confidence 00 01133455555544432 2334556677777777543 667888999999888766541 12
Q ss_pred cHHHHHHHHHHhHhh-cCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhchhhhh
Q 003195 396 YTSMLLRLLFPVVKE-EKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLS 473 (840)
Q Consensus 396 ~~~~lL~~Ll~~l~~-d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~ 473 (840)
+.......++..+ . |++..||+.+...+..+ ++++.+..++..+.+-+. .|.+.|..+...|+.++...+..+.
T Consensus 365 ~~~~~~~~i~~~L-~~d~d~~Ir~~aL~lL~~l---~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~ 440 (621)
T 2vgl_A 365 AVKTHIETVINAL-KTERDVSVRQRAVDLLYAM---CDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYT 440 (621)
T ss_dssp HHHTTHHHHHHHH-TTCCCHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTH
T ss_pred HHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHH---cChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHH
Confidence 3344455556666 5 88899998877765555 566777777777766553 5778888888888888766566677
Q ss_pred hhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCC--HHHHHHHHHHHHHHHHHhC
Q 003195 474 GYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSS--WSSKRKSAKAICKLGEILG 551 (840)
Q Consensus 474 ~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s--~~vR~~Aa~~L~~La~~~~ 551 (840)
.|.+.++.++-.....-..++-..+.++... .+ .++.| .+..+.+.+.++. ..+-+.|+-.||.-+....
T Consensus 441 ~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~-~~----~~~~~---~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~ 512 (621)
T 2vgl_A 441 WYVDTILNLIRIAGDYVSEEVWYRVIQIVIN-RD----DVQGY---AAKTVFEALQAPACHENLVKVGGYILGEFGNLIA 512 (621)
T ss_dssp HHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG-GC----SCHHH---HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHhC-Ch----hHHHH---HHHHHHHHHcCccchHHHHHHHHHHhcchHHHhc
Confidence 7888777765432221222222222222211 11 23333 3444556666654 3455556667776655433
Q ss_pred cc--hhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHh--hcCHHHHHHHHH
Q 003195 552 ES--LSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACR--KKIKKYREAAFS 627 (840)
Q Consensus 552 ~~--l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~R~~Al~ 627 (840)
+. .. -..++..+.+.+...+..+|..++.|+..+....++ ..+.+...+..... +.++++|..|..
T Consensus 513 ~~~~~~--p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~--------~~~~i~~~l~~~~~~~~~d~evrdRA~~ 582 (621)
T 2vgl_A 513 GDPRSS--PLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE--------VKATIQDVLRSDSQLKNADVELQQRAVE 582 (621)
T ss_dssp SSTTSC--HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG--------GHHHHHHHHSSHHHHSCSSHHHHHHHHH
T ss_pred ccCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH--------HHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 21 11 125567788888888889999999999998765432 23445554444444 679999999986
Q ss_pred HHHHHHH
Q 003195 628 CLEQVIK 634 (840)
Q Consensus 628 ~L~~l~~ 634 (840)
.+ +++.
T Consensus 583 y~-~Ll~ 588 (621)
T 2vgl_A 583 YL-RLST 588 (621)
T ss_dssp HH-HHHH
T ss_pred HH-HHHc
Confidence 54 4443
No 45
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.34 E-value=4.6e-10 Score=138.97 Aligned_cols=445 Identities=11% Similarity=0.117 Sum_probs=247.4
Q ss_pred hhhchhhhhHHHHHHh-hcCCCC----H-----------hHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHhh---C
Q 003195 108 DALKPHLRLLIPKLVR-FQYDPD----K-----------NVQDAMAHIWKSLVA-DPKRTIDEHLDLIFDDLLIQS---G 167 (840)
Q Consensus 108 ~~l~~~l~~lvP~L~~-~~~Dp~----~-----------~VR~a~~~iw~~Lv~-d~~~~i~~~~~~Il~~Ll~~l---~ 167 (840)
+..+|++.++++.+++ ..||++ . ..|+-+..+...+.- ++...++.-++.|.+.+-+.+ .
T Consensus 374 ~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~ 453 (980)
T 3ibv_A 374 ASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSP 453 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccC
Confidence 3455778888888874 344332 1 366665544443322 222222222224444333333 2
Q ss_pred CCChhHHHHHHHHHHHHHccCCch-----hhhHHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003195 168 SRLWRSREASCLSLADIIQGRKFD-----QVGKHLRRIWTAAFRAMD-----DIKETVRTAGDKLCRSVTSLTIRLCDVT 237 (840)
Q Consensus 168 ~~~wrvR~aac~Al~~Ll~~~~~~-----~l~~~L~~l~~~l~~~ld-----D~~~~VR~aA~~~~~~l~~~~ir~~~~~ 237 (840)
+.+|+.+|++..+++.+.++.... ...++++.+++.+.+.++ +.++.||.++..++...++|+.
T Consensus 454 ~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~------ 527 (980)
T 3ibv_A 454 ENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFD------ 527 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGG------
T ss_pred CCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHh------
Confidence 457999999999999998876432 123566677777777765 8999999988766666555541
Q ss_pred ccccchHHhHHHhHHHHHHh-cccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccC-chhHhHHHHHHh
Q 003195 238 LTEISDARQSMDIVLPFLLA-EGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSS-LEDQGLNYIELH 315 (840)
Q Consensus 238 ~~~~~~~~~~l~~lLP~Ll~-~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~-~ep~~~~~l~~~ 315 (840)
...+.++.+|++++. +|+.+++..||..|+.++.++++.+++.+.||++.++..+...+.. .+|.. .
T Consensus 528 -----~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~------~ 596 (980)
T 3ibv_A 528 -----YESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVT------D 596 (980)
T ss_dssp -----TCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCC------C
T ss_pred -----cCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCC------c
Confidence 122567778888774 3888888899999999999999999999999999988888766652 11100 0
Q ss_pred hhhccc------chhhhHHHHHhhccCCcHHHHHHHHHhhcCh------hhHhhHHHHHHHHHh----ccCCC-chHh--
Q 003195 316 AANAGI------QTEKLENLRISIAKGSPMWDTLDLCINVVDT------ESLDQLVPHLARLVR----SGIGL-NTRV-- 376 (840)
Q Consensus 316 a~~~~~------~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~------~~l~~lvp~L~~~lk----~~~~~-~~r~-- 376 (840)
.+.+.. .++.+++. -.++||++.++...+. ..++.+++.+.+.+. ..... ..+.
T Consensus 597 ~~~~~~~~~~~~~~~~~~~q-------l~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i 669 (980)
T 3ibv_A 597 MDAPVPTLNSSIRNSDFNSQ-------LYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISV 669 (980)
T ss_dssp --CSSCCHHHHHHTTTHHHH-------HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHH
T ss_pred ccccccchhhhcccCCchHH-------HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHH
Confidence 000000 00001111 1267888888766541 134555555444433 22111 1122
Q ss_pred -HHHHHHHHHHHHhcc---Cccc---cHHHHHHHHHHhHh-hcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 003195 377 -GVASFISLLVQKIGM---DIKP---YTSMLLRLLFPVVK-EEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI 448 (840)
Q Consensus 377 -~a~~~l~~L~~~~~~---~~~p---~~~~lL~~Ll~~l~-~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~ 448 (840)
..+.+++.+++.+.. ...| ...+.++.++..+. ...+..||+++..++.+++...+.+ +..+++.+.+.+.
T Consensus 670 ~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~-~~p~lp~~i~~ll 748 (980)
T 3ibv_A 670 YCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPD-MLPKVPQLISILL 748 (980)
T ss_dssp HHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHH-HTTTHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHh-HHHHHHHHHHHHH
Confidence 223344555554321 1123 23355666666662 1467899999999999999988766 4455555444432
Q ss_pred C--ChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHH----HHhhcCC---c------hHHHHHHHHHHHHhcC-CChh-
Q 003195 449 D--DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVI----FISRFED---D------KYVSDLFEELWEENTS-GDRV- 511 (840)
Q Consensus 449 ~--d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l----~~~~~d~---d------~~vr~~~~~i~~~~~~-~~~~- 511 (840)
. +...-.....+++.+....++.+.+.++.+++.+ |.....+ . ++++..+......+.. +...
T Consensus 749 ~~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v 828 (980)
T 3ibv_A 749 NSIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSI 828 (980)
T ss_dssp HHCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGG
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhh
Confidence 1 1111122233444443333333444454444333 2222211 1 1244444344443333 2221
Q ss_pred ----hHHhhHHHHHHHHHhhhcC-CCHHHHHHHHHHHHHHHHHhCc-----chhhh-HHHHHHHHHHhcCCCCchhHH
Q 003195 512 ----TLQLYLGEIVSLICEGIAS-SSWSSKRKSAKAICKLGEILGE-----SLSNY-HHVLLESIMKEVPGRLWEGKD 578 (840)
Q Consensus 512 ----~i~~yl~~Il~~l~~~L~d-~s~~vR~~Aa~~L~~La~~~~~-----~l~~~-l~~llp~L~~~l~~r~~~~Ke 578 (840)
.-+.+++.++..+..+-.+ ++...++.|...+..++...|+ .|..| ++ ++|.........+++-|+
T Consensus 829 ~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~f~~~D 905 (980)
T 3ibv_A 829 LFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKDGIAGFENFTLS-LTPLCFEMPVNPNFNTRD 905 (980)
T ss_dssp GGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-------CCHHHHHHH-HHHHHHHGGGC-------
T ss_pred hcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHH-HHHHHHHhhcCCCCChhh
Confidence 1246788888888876554 6778999999999999988653 36666 56 888888887666666543
No 46
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.33 E-value=7.2e-11 Score=122.59 Aligned_cols=196 Identities=14% Similarity=0.065 Sum_probs=160.4
Q ss_pred HhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHH
Q 003195 355 LDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS 434 (840)
Q Consensus 355 l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~ 434 (840)
+..+-|.+.+.+.+. .|..|.+++..|..++..++....+...++++.+...+..|.|..||..++.+++.++
T Consensus 13 ~~~l~~~l~~~l~s~-~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la------ 85 (242)
T 2qk2_A 13 LSKMPKDFYDKLEEK-KWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLA------ 85 (242)
T ss_dssp GGGSCTTHHHHHTCS-SHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH------
T ss_pred cccCCHHHHhhhccC-CHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH------
Confidence 345556677777654 8999999999999998876554445567889999888822889999888887776554
Q ss_pred HHHHHHHHHHHhhcCChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHH
Q 003195 435 QAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQ 514 (840)
Q Consensus 435 ~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~ 514 (840)
...+..|.+|...++|.++....|..+.||+........+....
T Consensus 86 -------------------------------~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~----- 129 (242)
T 2qk2_A 86 -------------------------------KGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST----- 129 (242)
T ss_dssp -------------------------------HHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-----
T ss_pred -------------------------------HHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-----
Confidence 23355788999999999999888999999998888887776643
Q ss_pred hhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCc--chhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcc
Q 003195 515 LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE--SLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCH 592 (840)
Q Consensus 515 ~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~--~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~ 592 (840)
.++.+++.+...+++.+|.+|..+...|+.++...+. .+.++++.++|.|...+.++.|.+|..+..+++.++...+
T Consensus 130 -~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 130 -SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp -CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 2567888889999999999999999999998877653 4577899999999999999999999999999999998887
Q ss_pred cc
Q 003195 593 KD 594 (840)
Q Consensus 593 ~~ 594 (840)
..
T Consensus 209 ~~ 210 (242)
T 2qk2_A 209 DK 210 (242)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 47
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.31 E-value=3.8e-11 Score=125.18 Aligned_cols=204 Identities=12% Similarity=0.115 Sum_probs=157.6
Q ss_pred HHHhhCCCChhHHHHHHHHHHH-HHccCCchhh-hHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHHhhh-cc
Q 003195 162 LLIQSGSRLWRSREASCLSLAD-IIQGRKFDQV-GKHLRRIWTAAFRAM-DDIKETVRTAGDKLCRSVTSLTIRLCD-VT 237 (840)
Q Consensus 162 Ll~~l~~~~wrvR~aac~Al~~-Ll~~~~~~~l-~~~L~~l~~~l~~~l-dD~~~~VR~aA~~~~~~l~~~~ir~~~-~~ 237 (840)
..+.+.+++|+.|.++..++.. ++++.+.-.. ...+.+++..+.+.+ +|.+..||.+|..++..+++.+ . +
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l----~~~- 95 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKL----KTP- 95 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH----CTT-
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc----ccc-
Confidence 3446689999999999999999 9877432110 233457788888889 8999999999988887776433 1 1
Q ss_pred ccccchHH-hHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhcccc-ccchHHHHHHHHHhccCchhHhHHHHHHh
Q 003195 238 LTEISDAR-QSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAI-RPHLSDLVSCMLESLSSLEDQGLNYIELH 315 (840)
Q Consensus 238 ~~~~~~~~-~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l-~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~ 315 (840)
... .+...++|.++++ +.+....||..+..++..++....+.. .+|++.+++.++..+.+.
T Consensus 96 -----~f~~~y~~~llp~ll~~-l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k----------- 158 (249)
T 2qk1_A 96 -----GFSKDYVSLVFTPLLDR-TKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK----------- 158 (249)
T ss_dssp -----TSCHHHHHHHHHHHHHG-GGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-----------
T ss_pred -----cccHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-----------
Confidence 234 6778899999974 677678899999999999998876532 234888888888776532
Q ss_pred hhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhc---cC
Q 003195 316 AANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIG---MD 392 (840)
Q Consensus 316 a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~---~~ 392 (840)
.+.+|.+++.+|..++...+ ..
T Consensus 159 -------------------------------------------------------~~~vk~~al~~l~~~~~~~~~~~~~ 183 (249)
T 2qk1_A 159 -------------------------------------------------------TPQIRMECTQLFNASMKEEKDGYST 183 (249)
T ss_dssp -------------------------------------------------------SHHHHHHHHHHHHHHHHHCCSCSHH
T ss_pred -------------------------------------------------------ChHHHHHHHHHHHHHHHHcCCcchh
Confidence 23447778888888888877 45
Q ss_pred ccccH-HHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 003195 393 IKPYT-SMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEET 443 (840)
Q Consensus 393 ~~p~~-~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l 443 (840)
|.+|. +.+++.+.+.+ +|.+..||++++.+++.+++..+.+.+..+++.+
T Consensus 184 l~~~l~~~iip~l~~~l-~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 184 LQRYLKDEVVPIVIQIV-NDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 77899 99999999999 8999999999999999999998887777776664
No 48
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.30 E-value=3.9e-09 Score=122.04 Aligned_cols=398 Identities=10% Similarity=0.062 Sum_probs=240.4
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHH-HHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHHhhhc
Q 003195 159 FDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHL-RRIWTAAFRAMD-DIKETVRTAGDKLCRSVTSLTIRLCDV 236 (840)
Q Consensus 159 l~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L-~~l~~~l~~~ld-D~~~~VR~aA~~~~~~l~~~~ir~~~~ 236 (840)
++++++++.+.+...+..|+.++..++.....+.+.... ..++|.|.+.|+ +..+.++..|..++.+++.-
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~------- 131 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG------- 131 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTS-------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC-------
Confidence 566888999999999999999999988643222222211 247888888886 44578888776666665321
Q ss_pred cccccchHHhHHH-hHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccch--HHHHHHHHHhccCchhHhHHHHH
Q 003195 237 TLTEISDARQSMD-IVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHL--SDLVSCMLESLSSLEDQGLNYIE 313 (840)
Q Consensus 237 ~~~~~~~~~~~l~-~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~l--p~Lv~~Ll~~ls~~ep~~~~~l~ 313 (840)
++.....+++ -.+|.|+. -|.+++.++|..++.+|++|+..... .+..+ ...++.|+..+.......
T Consensus 132 ---~~e~~~~vv~~GaIp~Lv~-lL~s~~~~v~e~A~~aL~nLa~d~~~-~r~~v~~~G~i~~Ll~lL~~~~~~~----- 201 (510)
T 3ul1_B 132 ---TSEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGDGSA-FRDLVIKHGAIDPLLALLAVPDLST----- 201 (510)
T ss_dssp ---CHHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHHHHHHTCSSCGGG-----
T ss_pred ---CHHHHHHHHHCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHHhCCHH-HHHHHHHcCChHHHHHHHHhccchh-----
Confidence 0011222332 36787774 36778899999999999999853211 11110 012333333332211000
Q ss_pred HhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCc
Q 003195 314 LHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDI 393 (840)
Q Consensus 314 ~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~ 393 (840)
.....+..++.++..++... ...
T Consensus 202 --------------------------------------------------------~~~~~~~~a~~~L~nl~~~~-~~~ 224 (510)
T 3ul1_B 202 --------------------------------------------------------LACGYLRNLTWTLSNLCRNK-NPA 224 (510)
T ss_dssp --------------------------------------------------------SCHHHHHHHHHHHHHHHCCC-SSC
T ss_pred --------------------------------------------------------hhHHHHHHHHHHHHHHhhcc-cch
Confidence 00001112333343333211 111
Q ss_pred c--ccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHH--H--HHHHHHHHHhhc-CChhhhHHHHHHHHHHHh
Q 003195 394 K--PYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQ--A--QKLIEETAALHI-DDKNSQISCAILLKSYSS 466 (840)
Q Consensus 394 ~--p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~--~--~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~ 466 (840)
. .....+++.|...+ .+.+..|+..++.++.++....+... + ...++.+.+.+. .+...+..+..+++.++.
T Consensus 225 ~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~ 303 (510)
T 3ul1_B 225 PPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 303 (510)
T ss_dssp CCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhc
Confidence 1 12356788888888 67889999999999999986543221 1 235677777765 467788888889998876
Q ss_pred hchhhhhhhH-hhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHHhhhcCCCHHHHHHHHHHHH
Q 003195 467 VASDVLSGYH-AVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYL-GEIVSLICEGIASSSWSSKRKSAKAIC 544 (840)
Q Consensus 467 ~~~~~f~~~~-~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl-~~Il~~l~~~L~d~s~~vR~~Aa~~L~ 544 (840)
.....-.... ..++|.+.....+++++++.....++..+..+......... ..+++.+...+.+.++++|+.|+.+|+
T Consensus 304 ~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~ 383 (510)
T 3ul1_B 304 GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAIT 383 (510)
T ss_dssp SCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5433222222 22555555555667788887766666666665443333222 357888999999999999999999999
Q ss_pred HHHHHhCcchhhhH--HHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHH-----HHHHHHHHHhhc
Q 003195 545 KLGEILGESLSNYH--HVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFA-----IVDMVSSACRKK 617 (840)
Q Consensus 545 ~La~~~~~~l~~~l--~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~-----i~~~l~~~~~~~ 617 (840)
.++......-..++ ...++.|.+-|..........++.+|..++..... ... ..++... .++.|......+
T Consensus 384 Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~-~~~-~~~~~~~iee~ggl~~ie~Lq~~~ 461 (510)
T 3ul1_B 384 NYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK-LGE-TEKLSIMIEECGGLDKIEALQRHE 461 (510)
T ss_dssp HHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHT-TTC-HHHHHHHHHHTTHHHHHHHGGGCS
T ss_pred HHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHh-ccc-hHHHHHHHHHcCcHHHHHHHHcCC
Confidence 99975432211121 34678888888888888899999999998864432 110 0011111 122333333456
Q ss_pred CHHHHHHHHHHHHHHH
Q 003195 618 IKKYREAAFSCLEQVI 633 (840)
Q Consensus 618 ~~~~R~~Al~~L~~l~ 633 (840)
|..+++.|+..+.++.
T Consensus 462 n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 462 NESVYKASLNLIEKYF 477 (510)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHC
Confidence 7888888887776654
No 49
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.26 E-value=1.1e-08 Score=118.90 Aligned_cols=398 Identities=10% Similarity=0.065 Sum_probs=240.3
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHH-HHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHHhhhc
Q 003195 159 FDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKH-LRRIWTAAFRAMD-DIKETVRTAGDKLCRSVTSLTIRLCDV 236 (840)
Q Consensus 159 l~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~-L~~l~~~l~~~ld-D~~~~VR~aA~~~~~~l~~~~ir~~~~ 236 (840)
++.++.++.+.+...+..|+.++..++.....+.+... -..++|.+.+.|. +..+.++..|..++..++.-.
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~------ 151 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT------ 151 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC------
Confidence 56678888898999999999999988864322222211 1257788888885 456788887766666553210
Q ss_pred cccccchHHhHH-HhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccch--HHHHHHHHHhccCchhHhHHHHH
Q 003195 237 TLTEISDARQSM-DIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHL--SDLVSCMLESLSSLEDQGLNYIE 313 (840)
Q Consensus 237 ~~~~~~~~~~~l-~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~l--p~Lv~~Ll~~ls~~ep~~~~~l~ 313 (840)
+.....++ ...+|.|+. -+.+++.++|..|+.+|++|+..... .+..+ ...++.|+..+.......
T Consensus 152 ----~~~~~~vv~~Gaip~Lv~-LL~s~~~~v~e~A~~aL~nLa~~~~~-~r~~i~~~g~i~~Ll~lL~~~~~~~----- 220 (529)
T 3tpo_A 152 ----SEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGAGSA-FRDLVIKHGAIDPLLALLAVPDLST----- 220 (529)
T ss_dssp ----HHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHHHHHTTCSSCGGG-----
T ss_pred ----HHHHHHHHHCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHhccCHH-HHHHHHHcCCcHHHHHHHhccchhH-----
Confidence 00111222 236787774 36678899999999999999853211 11111 012344444433211000
Q ss_pred HhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCc
Q 003195 314 LHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDI 393 (840)
Q Consensus 314 ~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~ 393 (840)
........++.++..++.... ..
T Consensus 221 --------------------------------------------------------~~~~~~~~a~~~L~nl~~~~~-~~ 243 (529)
T 3tpo_A 221 --------------------------------------------------------LACGYLRNLTWTLSNLCRNKN-PA 243 (529)
T ss_dssp --------------------------------------------------------SCHHHHHHHHHHHHHHHCCCT-TC
T ss_pred --------------------------------------------------------hHHHHHHHHHHHHHHHHhccc-ch
Confidence 000011123333333332111 11
Q ss_pred c--ccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHH--HH--HHHHHHHHHhhc-CChhhhHHHHHHHHHHHh
Q 003195 394 K--PYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS--QA--QKLIEETAALHI-DDKNSQISCAILLKSYSS 466 (840)
Q Consensus 394 ~--p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~--~~--~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~ 466 (840)
. .....+++.|...+ .+.++.|+..++.++.++....++. .+ ...++.+++.+. .+...+..+..+++.++.
T Consensus 244 ~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~ 322 (529)
T 3tpo_A 244 PPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 322 (529)
T ss_dssp CCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred hhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHc
Confidence 1 12356778888888 6788999999999999998654322 11 235677777775 467788888899999876
Q ss_pred hchhhhhhhH-hhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHHhhhcCCCHHHHHHHHHHHH
Q 003195 467 VASDVLSGYH-AVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYL-GEIVSLICEGIASSSWSSKRKSAKAIC 544 (840)
Q Consensus 467 ~~~~~f~~~~-~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl-~~Il~~l~~~L~d~s~~vR~~Aa~~L~ 544 (840)
.....-.... ..++|.+.....+++++++.....++..+..+......... ..+++.+...+.+.++++|+.|+.+|+
T Consensus 323 ~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~ 402 (529)
T 3tpo_A 323 GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAIT 402 (529)
T ss_dssp SCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred cchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 5433222222 23566665666677888887666666666655443333222 347888899999999999999999999
Q ss_pred HHHHHhCcchhhhH--HHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHH-----HHHHHHHHhhc
Q 003195 545 KLGEILGESLSNYH--HVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAI-----VDMVSSACRKK 617 (840)
Q Consensus 545 ~La~~~~~~l~~~l--~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i-----~~~l~~~~~~~ 617 (840)
.++......-..++ ..++|.|++-|..........++.+|..++..... ... ..++...+ ++.|......+
T Consensus 403 nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~-~~~-~~~~~~~iee~ggl~~ie~Lq~~~ 480 (529)
T 3tpo_A 403 NYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK-LGE-TEKLSIMIEECGGLDKIEALQRHE 480 (529)
T ss_dssp HHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHT-TTC-HHHHHHHHHHTTCHHHHTGGGGCS
T ss_pred HHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHh-ccC-hHHHHHHHHHCCcHHHHHHHHcCC
Confidence 99975432211121 24678888888888888899999999988764321 110 00111111 22233333457
Q ss_pred CHHHHHHHHHHHHHHH
Q 003195 618 IKKYREAAFSCLEQVI 633 (840)
Q Consensus 618 ~~~~R~~Al~~L~~l~ 633 (840)
|..+++.|+..+.++.
T Consensus 481 n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 481 NESVYKASLNLIEKYF 496 (529)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHC
Confidence 8888898888887764
No 50
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.24 E-value=2.1e-10 Score=138.87 Aligned_cols=297 Identities=12% Similarity=0.144 Sum_probs=219.8
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCC-chhh
Q 003195 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPK-RTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRK-FDQV 193 (840)
Q Consensus 116 ~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~-~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~-~~~l 193 (840)
.++.++. ..| ....+.++..+...+..+.. ..+. ..++..|.+.+.++.-- ++||.++..+.+... .+.+
T Consensus 18 ~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~ 89 (986)
T 2iw3_A 18 ELFQKLS--VAT-ADNRHEIASEVASFLNGNIIEHDVP---EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV 89 (986)
T ss_dssp HHHHHHT--TCC-TTTHHHHHHHHHHHHTSSCSSSSCC---HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT
T ss_pred HHHhhcc--ccc-hhHHHHHHHHHHHHHhccccccccc---hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc
Confidence 3455552 233 45567777777777664311 1111 25677788888776433 999999999996432 2347
Q ss_pred hHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCc-hhHHHHHHH
Q 003195 194 GKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSK-VDSISKASI 272 (840)
Q Consensus 194 ~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~-~~evr~~al 272 (840)
++|+-.+++.++..+.|....||+||..+..++.+. +.+ ..+..++|.|+. .+.+. .|..|..++
T Consensus 90 e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~----~~~---------~a~~~~~~~~~~-~~~~~~kw~~k~~~l 155 (986)
T 2iw3_A 90 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNA----VNP---------VAIKALLPHLTN-AIVETNKWQEKIAIL 155 (986)
T ss_dssp HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHH----SCG---------GGHHHHHHHHHH-HHHHCCCHHHHHHHH
T ss_pred ccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh----CCH---------HHHHHHHHHHHH-HhccccchHHHHHHH
Confidence 999999999999999999999999999999888543 332 244778888874 45443 599999999
Q ss_pred HHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcCh
Q 003195 273 GVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDT 352 (840)
Q Consensus 273 ~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~ 352 (840)
.++..+++..+..+.-++|+++|.+.+.+.+.+|++..- ..+++..++..++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~---------------------------~~~~~~~~~~~~~n 208 (986)
T 2iw3_A 156 AAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAA---------------------------ATAAMTKATETVDN 208 (986)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHH---------------------------HHHHHHHHGGGCCC
T ss_pred HHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHH---------------------------HHHHHHHHHhcCCC
Confidence 999999999888899999999999999999998876321 12467888999999
Q ss_pred hhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCcc-ccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcC
Q 003195 353 ESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIK-PYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYA 431 (840)
Q Consensus 353 ~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~-p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~ 431 (840)
..+..++|.|++.+.++.. --+|.+.|+ ++.+-..+. |-+.-+.|.|..+| ++|..++++.++..++.+++..
T Consensus 209 ~d~~~~~~~~~~~~~~p~~---~~~~~~~l~--~~tfv~~v~~~~l~~~~p~l~r~l-~~~~~~~~r~~~~~~~n~~~lv 282 (986)
T 2iw3_A 209 KDIERFIPSLIQCIADPTE---VPETVHLLG--ATTFVAEVTPATLSIMVPLLSRGL-NERETGIKRKSAVIIDNMCKLV 282 (986)
T ss_dssp TTTGGGHHHHHHHHHCTTH---HHHHHHHHT--TCCCCSCCCHHHHHHHHHHHHHHH-TSSSHHHHHHHHHHHHHHHTTC
T ss_pred cchhhhHHHHHHHhcChhh---hHHHHHHhh--cCeeEeeecchhHHHHHHHHHhhh-ccCcchhheeeEEEEcchhhhc
Confidence 9999999999999987622 224444443 223333443 66777888888998 7899999999999999999988
Q ss_pred CHH-HHHHHHHHHHHhh----c--CChhhhHHHHHHHHHHHhh
Q 003195 432 TPS-QAQKLIEETAALH----I--DDKNSQISCAILLKSYSSV 467 (840)
Q Consensus 432 ~~~-~~~~li~~l~~~~----~--~d~~~r~~~~~~i~ai~~~ 467 (840)
.+. .+..+++.|+..+ . .|++.|..+..++..+-+.
T Consensus 283 ~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 283 EDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp CCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 765 3566666665444 2 5899999988888877554
No 51
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.21 E-value=4.8e-09 Score=121.24 Aligned_cols=356 Identities=14% Similarity=0.072 Sum_probs=218.5
Q ss_pred HHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhhh-hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHH
Q 003195 75 LIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLR-LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDE 153 (840)
Q Consensus 75 lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~-~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~ 153 (840)
.+++|+.+..++....-+..|+.+|+.|+++..+.-+..+. ..+|.|.+++.+|++.||+.+..++..|..|.+...+.
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~ 180 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDL 180 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 58899998865543456678999999999876554433333 47999999999999999999999998898876443332
Q ss_pred HHH-HHHHHHHHhhCCCC-----hhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 003195 154 HLD-LIFDDLLIQSGSRL-----WRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVT 227 (840)
Q Consensus 154 ~~~-~Il~~Ll~~l~~~~-----wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~ 227 (840)
... -.++.|+..+.+.+ ..+...+++++.++..+.....-......+++.+.+.+.+..+.||..|..++..++
T Consensus 181 v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~ 260 (510)
T 3ul1_B 181 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 260 (510)
T ss_dssp HHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 222 24555666665443 345678889999998865443334456788899999999999999988766555542
Q ss_pred HHHHHhhhccccccchHHhH-HHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchh
Q 003195 228 SLTIRLCDVTLTEISDARQS-MDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLED 306 (840)
Q Consensus 228 ~~~ir~~~~~~~~~~~~~~~-l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep 306 (840)
. .. ......+ -..++|.|+. -+.+++..++..++.+|++++...... ...+++.
T Consensus 261 ~-------~~---~~~~~~i~~~g~i~~Lv~-lL~~~~~~v~~~al~aL~nl~~~~~~~--------~~~i~~~------ 315 (510)
T 3ul1_B 261 D-------GP---NERIEMVVKKGVVPQLVK-LLGATELPIVTPALRAIGNIVTGTDEQ--------TQKVIDA------ 315 (510)
T ss_dssp S-------SC---HHHHHHHHTTTCHHHHHH-HHTCSCHHHHHHHHHHHHHHTTSCHHH--------HHHHHHT------
T ss_pred h-------ch---hhhHHHHHhcccchhhhh-hhcCCChhhhhHHHHHHHHhhcCCHHH--------HHHHhhc------
Confidence 1 00 0011111 1235666663 255677889999999999887432110 0111100
Q ss_pred HhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHH
Q 003195 307 QGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLV 386 (840)
Q Consensus 307 ~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~ 386 (840)
..+|.|..+++++ ...+|..|+.+|+.|+
T Consensus 316 --------------------------------------------------g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~ 344 (510)
T 3ul1_B 316 --------------------------------------------------GALAVFPSLLTNP-KTNIQKEATWTMSNIT 344 (510)
T ss_dssp --------------------------------------------------TGGGGCC-CTTCS-SHHHHHHHHHHHHHHT
T ss_pred --------------------------------------------------cchHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 0011122222221 2234555666666554
Q ss_pred HHhccCcccc-HHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHH-----HHHHHHHhhc-CChhhhHHHHH
Q 003195 387 QKIGMDIKPY-TSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQK-----LIEETAALHI-DDKNSQISCAI 459 (840)
Q Consensus 387 ~~~~~~~~p~-~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~-----li~~l~~~~~-~d~~~r~~~~~ 459 (840)
.......... -..+++.++..+ .+.+..||+.++.|++.++...+.+.+.. .++.+.+++. .|++.+..+..
T Consensus 345 a~~~~~~~~v~~~g~i~~Lv~lL-~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~ 423 (510)
T 3ul1_B 345 AGRQDQIQQVVNHGLVPFLVGVL-SKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILD 423 (510)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred cCcHHHHHHHHhcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHH
Confidence 3221111111 124677888888 67889999999999999998877766543 3667777775 57778888888
Q ss_pred HHHHHHhhchh-----hhhhhHhh--HhHHHHHhhcCCchHHHHHHHHHHHHhcC
Q 003195 460 LLKSYSSVASD-----VLSGYHAV--IVPVIFISRFEDDKYVSDLFEELWEENTS 507 (840)
Q Consensus 460 ~i~ai~~~~~~-----~f~~~~~~--llP~l~~~~~d~d~~vr~~~~~i~~~~~~ 507 (840)
++..+.+.... .+...+.. .+..+-...+.+++++++.+.++.+...+
T Consensus 424 aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 424 AISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 88877664321 11111111 12222223345667777776666665544
No 52
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.19 E-value=7.9e-09 Score=119.99 Aligned_cols=355 Identities=14% Similarity=0.065 Sum_probs=220.3
Q ss_pred HHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhh-hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHH
Q 003195 75 LIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHL-RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDE 153 (840)
Q Consensus 75 lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l-~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~ 153 (840)
.+++|+.+..++....-+..|+.+|..|+.+..+..+..+ ...+|.|..++.+|++.||+.+..++..|+.+.+...+.
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~ 199 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDL 199 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHH
Confidence 6788998886554456777899999999987654433222 258999999999999999999999999998776443333
Q ss_pred HHH-HHHHHHHHhhCCCCh-----hHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 003195 154 HLD-LIFDDLLIQSGSRLW-----RSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVT 227 (840)
Q Consensus 154 ~~~-~Il~~Ll~~l~~~~w-----rvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~ 227 (840)
... -.++.|+..+.+.+. .+...+++++.++..+.....-......+++.+.+.+.+..+.|+..|..++..++
T Consensus 200 i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~ 279 (529)
T 3tpo_A 200 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 279 (529)
T ss_dssp HHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 222 245566666655432 45678889999998865443334456678899999999999999887755554442
Q ss_pred HHHHHhhhccccccchHHhH-HHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchh
Q 003195 228 SLTIRLCDVTLTEISDARQS-MDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLED 306 (840)
Q Consensus 228 ~~~ir~~~~~~~~~~~~~~~-l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep 306 (840)
. .. ......+ -..++|.|+. -+.+++..++..++.+|++++..... ....+++
T Consensus 280 ~-------~~---~~~~~~v~~~g~i~~Lv~-lL~~~~~~v~~~a~~aL~nl~~~~~~--------~~~~i~~------- 333 (529)
T 3tpo_A 280 D-------GP---NERIEMVVKKGVVPQLVK-LLGATELPIVTPALRAIGNIVTGTDE--------QTQKVID------- 333 (529)
T ss_dssp S-------SC---HHHHHHHHTTTCHHHHHH-HHTCSCHHHHHHHHHHHHHHTTSCHH--------HHHHHHH-------
T ss_pred h-------hh---hhhHHHHHhccchHHHHH-HhcCCChhHHHHHHHHHHHHHccchH--------HHHHHhh-------
Confidence 1 00 0011111 1245666663 25567788999999999988742111 0000000
Q ss_pred HhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHH
Q 003195 307 QGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLV 386 (840)
Q Consensus 307 ~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~ 386 (840)
...+|.|..+++++ ...+|..|+.+|+.|+
T Consensus 334 -------------------------------------------------~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~ 363 (529)
T 3tpo_A 334 -------------------------------------------------AGALAVFPSLLTNP-KTNIQKEATWTMSNIT 363 (529)
T ss_dssp -------------------------------------------------TTGGGGHHHHTTCS-SHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------cccHHHHHHHHcCC-CHHHHHHHHHHHHHHh
Confidence 00113333344332 3345666777776665
Q ss_pred HHhccCcccc-HHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHH-----HHHHHHHhhc-CChhhhHHHHH
Q 003195 387 QKIGMDIKPY-TSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQK-----LIEETAALHI-DDKNSQISCAI 459 (840)
Q Consensus 387 ~~~~~~~~p~-~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~-----li~~l~~~~~-~d~~~r~~~~~ 459 (840)
.......... -..+++.++..+ .+.+..|++.++.|++.++...+.+.+.. .++.|.+++. .|++.+..+..
T Consensus 364 ~~~~~~~~~v~~~g~i~~Lv~lL-~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~ 442 (529)
T 3tpo_A 364 AGRQDQIQQVVNHGLVPFLVGVL-SKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILD 442 (529)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred cccHHHHHHHHhcCcHHHHHHHh-cCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHH
Confidence 4222111111 124677888888 67889999999999999998777765543 4677888775 57778888888
Q ss_pred HHHHHHhhchh-----hhhhhHhh--HhHHHHHhhcCCchHHHHHHHHHHHHhc
Q 003195 460 LLKSYSSVASD-----VLSGYHAV--IVPVIFISRFEDDKYVSDLFEELWEENT 506 (840)
Q Consensus 460 ~i~ai~~~~~~-----~f~~~~~~--llP~l~~~~~d~d~~vr~~~~~i~~~~~ 506 (840)
++..+.+.... .+..++.. .+..+-...+.++++|++.+.++.+...
T Consensus 443 aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 443 AISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 88877654321 11111111 1122222234566777776666665543
No 53
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.16 E-value=4e-08 Score=116.00 Aligned_cols=404 Identities=10% Similarity=0.036 Sum_probs=247.4
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccc
Q 003195 159 FDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTL 238 (840)
Q Consensus 159 l~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~ 238 (840)
..++++.+.+++...|+.+-.++..+.++.+ +.+.-.+..+.+-+.|.++.+|..|.+++..+.
T Consensus 76 ~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~-----e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~----------- 139 (621)
T 2vgl_A 76 HMEAVNLLSSNRYTEKQIGYLFISVLVNSNS-----ELIRLINNAIKNDLASRNPTFMGLALHCIANVG----------- 139 (621)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH-----HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccCCc-----HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC-----------
Confidence 4456778889999999999999988876532 223344556666788999999998866655441
Q ss_pred cccchHHhHHHhHHHHHHhccc--CCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhh
Q 003195 239 TEISDARQSMDIVLPFLLAEGI--LSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHA 316 (840)
Q Consensus 239 ~~~~~~~~~l~~lLP~Ll~~gL--~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a 316 (840)
..++.+.++|.+. +++ .+.++-||..|+.++.++.+..+..+. + +.+++.+.+.+.+..|.++....
T Consensus 140 -----~~e~~~~l~~~v~-~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~-~-~~~~~~l~~lL~d~d~~V~~~a~--- 208 (621)
T 2vgl_A 140 -----SREMAEAFAGEIP-KILVAGDTMDSVKQSAALCLLRLYRTSPDLVP-M-GDWTSRVVHLLNDQHLGVVTAAT--- 208 (621)
T ss_dssp -----CHHHHHHHTTHHH-HHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC-C-CSCHHHHHHHTTCSCHHHHHHHH---
T ss_pred -----CHHHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC-c-hhHHHHHHHHhCCCCccHHHHHH---
Confidence 2346677888876 467 677899999999999999997665544 2 45677777788777666543211
Q ss_pred hhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHh----cc-C-----------CCchHhHHHH
Q 003195 317 ANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVR----SG-I-----------GLNTRVGVAS 380 (840)
Q Consensus 317 ~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk----~~-~-----------~~~~r~~a~~ 380 (840)
.++..++.. +.+.+..++|.+.+.++ .. . +.-.++..++
T Consensus 209 ------------------------~~l~~i~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ 263 (621)
T 2vgl_A 209 ------------------------SLITTLAQK-NPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLR 263 (621)
T ss_dssp ------------------------HHHHHHHHH-CHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHH
T ss_pred ------------------------HHHHHHHHh-ChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHH
Confidence 112222211 11222234444433332 21 0 0011223333
Q ss_pred HHHHHHHHhccCccccHHHHHHHHHHhHh--------hcCcH--HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc-C
Q 003195 381 FISLLVQKIGMDIKPYTSMLLRLLFPVVK--------EEKSA--AAKRAFASACASVLKYATPSQAQKLIEETAALHI-D 449 (840)
Q Consensus 381 ~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~--------~d~~~--~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~-~ 449 (840)
++..+...-........-.++..+++.+. +++|. +|.-+++.++-++- ..++.+...+..+...+. .
T Consensus 264 ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~--~~~~~~~~~~~~L~~~L~~~ 341 (621)
T 2vgl_A 264 LLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD--SEPNLLVRACNQLGQFLQHR 341 (621)
T ss_dssp HGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHSSCS
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhcCC
Confidence 33222110000111112223333433220 22343 66666666665553 234445566666666654 5
Q ss_pred ChhhhHHHHHHHHHHHhhch--hhhhhhHhhHhHHHHHhhc-CCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHh
Q 003195 450 DKNSQISCAILLKSYSSVAS--DVLSGYHAVIVPVIFISRF-EDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICE 526 (840)
Q Consensus 450 d~~~r~~~~~~i~ai~~~~~--~~f~~~~~~llP~l~~~~~-d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~ 526 (840)
|++.|..+...+..++...+ +.+.+|...++ .... |+|..+|....++.-.++.. ..+..|+.-+.+
T Consensus 342 ~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~----~~L~~d~d~~Ir~~aL~lL~~l~~~------~Nv~~Iv~eL~~ 411 (621)
T 2vgl_A 342 ETNLRYLALESMCTLASSEFSHEAVKTHIETVI----NALKTERDVSVRQRAVDLLYAMCDR------SNAQQIVAEMLS 411 (621)
T ss_dssp CHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHH----HHHTTCCCHHHHHHHHHHHHHHCCH------HHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhccCcHHHHHHHHHHHH----HHhccCCCHhHHHHHHHHHHHHcCh------hhHHHHHHHHHH
Confidence 78899999999999887654 44555554443 4445 88889998777777666543 245667777777
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHH
Q 003195 527 GIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAI 606 (840)
Q Consensus 527 ~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i 606 (840)
++.+.+.+.|+.+..+|+.++..++.....++..++..+...-. ..+.+++..+..++.... ......
T Consensus 412 yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~----~v~~ev~~~l~~ii~~~~--------~~~~~~ 479 (621)
T 2vgl_A 412 YLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGD----YVSEEVWYRVIQIVINRD--------DVQGYA 479 (621)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGG----GSCSHHHHHHHHHHGGGC--------SCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc----cchHHHHHHHHHHHhCCh--------hHHHHH
Confidence 88888999999999999999999988877778887777754321 245566777777775432 223445
Q ss_pred HHHHHHHHhhc--CHHHHHHHHHHHHHHHHHcCC
Q 003195 607 VDMVSSACRKK--IKKYREAAFSCLEQVIKAFRD 638 (840)
Q Consensus 607 ~~~l~~~~~~~--~~~~R~~Al~~L~~l~~~~~~ 638 (840)
+..+...+.+. ...+-+.|++++|++....++
T Consensus 480 ~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~ 513 (621)
T 2vgl_A 480 AKTVFEALQAPACHENLVKVGGYILGEFGNLIAG 513 (621)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHS
T ss_pred HHHHHHHHcCccchHHHHHHHHHHhcchHHHhcc
Confidence 55566655443 335666777999999776654
No 54
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.08 E-value=5.4e-09 Score=110.65 Aligned_cols=253 Identities=13% Similarity=0.033 Sum_probs=167.3
Q ss_pred HHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHH
Q 003195 76 IYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHL 155 (840)
Q Consensus 76 v~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~ 155 (840)
+..++.+..+. ++..|..|+.+|+.+.. +..+|.|..++.|+++.||..+..++..+..++. . +
T Consensus 25 i~~L~~~L~~~-~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~-~----~ 88 (280)
T 1oyz_A 25 DDELFRLLDDH-NSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-C----E 88 (280)
T ss_dssp HHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT-T----H
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc-c----c
Confidence 45555555443 57888889989887642 2367888888899999999999988888764332 2 3
Q ss_pred HHHHHHHHH-hhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhh
Q 003195 156 DLIFDDLLI-QSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLC 234 (840)
Q Consensus 156 ~~Il~~Ll~-~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~ 234 (840)
+.+++.|.. .+.|++|.||..++.+|+.+-.+. ..+-+.+++.+...++|..+.||.+|..++..++.
T Consensus 89 ~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~-----~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~------ 157 (280)
T 1oyz_A 89 DNVFNILNNMALNDKSACVRATAIESTAQRCKKN-----PIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND------ 157 (280)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-----CcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC------
Confidence 345554442 357889999999999999985432 12345778888888999999999988666543321
Q ss_pred hccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHH
Q 003195 235 DVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIEL 314 (840)
Q Consensus 235 ~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~ 314 (840)
+..+|.|+. .+.++++.||..++.+|+.+. +.-+..++.|+..+.+..+.+.....
T Consensus 158 --------------~~~~~~L~~-~l~d~~~~vr~~a~~aL~~~~--------~~~~~~~~~L~~~l~d~~~~vR~~A~- 213 (280)
T 1oyz_A 158 --------------KATIPLLIN-LLKDPNGDVRNWAAFAININK--------YDNSDIRDCFVEMLQDKNEEVRIEAI- 213 (280)
T ss_dssp ---------------CCHHHHHH-HHTCSSHHHHHHHHHHHHHHT--------CCCHHHHHHHHHHTTCSCHHHHHHHH-
T ss_pred --------------HHHHHHHHH-HHcCCCHHHHHHHHHHHHhhc--------cCcHHHHHHHHHHhcCCCHHHHHHHH-
Confidence 114555553 356677899999999998762 12357788888888765554432211
Q ss_pred hhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCcc
Q 003195 315 HAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIK 394 (840)
Q Consensus 315 ~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~ 394 (840)
.++..+ -+ +..+|.|.+.++++ .+|..++..++.+ |.
T Consensus 214 --------------------------~aL~~~---~~----~~~~~~L~~~l~d~---~vr~~a~~aL~~i----~~--- 250 (280)
T 1oyz_A 214 --------------------------IGLSYR---KD----KRVLSVLCDELKKN---TVYDDIIEAAGEL----GD--- 250 (280)
T ss_dssp --------------------------HHHHHT---TC----GGGHHHHHHHHTSS---SCCHHHHHHHHHH----CC---
T ss_pred --------------------------HHHHHh---CC----HhhHHHHHHHhcCc---cHHHHHHHHHHhc----Cc---
Confidence 122211 12 24567777777764 3678888887655 32
Q ss_pred ccHHHHHHHHHHhHhhcCcHHHHHHHHHHHH
Q 003195 395 PYTSMLLRLLFPVVKEEKSAAAKRAFASACA 425 (840)
Q Consensus 395 p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg 425 (840)
+..++.|...+.++.+..++..++.++.
T Consensus 251 ---~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 251 ---KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp ---GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred ---hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 2566777777744456667777666654
No 55
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.08 E-value=2.5e-08 Score=105.49 Aligned_cols=246 Identities=12% Similarity=0.031 Sum_probs=163.6
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003195 158 IFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVT 237 (840)
Q Consensus 158 Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~ 237 (840)
.++.|+..+.|+++.+|..|+.+|+.+-. +..++.+.+.++|..+.||..|..++..++ .
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~-------~-- 83 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIK-------I-- 83 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSC-------C--
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------c--
Confidence 45668888899999999999999998731 356777788899999999998866554331 0
Q ss_pred ccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhh
Q 003195 238 LTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAA 317 (840)
Q Consensus 238 ~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~ 317 (840)
....+..++|.|....+.++++.||..++.+|+.+....+ ++.+.+++.|...+.+..+.++.....
T Consensus 84 ------~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~--- 150 (280)
T 1oyz_A 84 ------CKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAF--- 150 (280)
T ss_dssp ------CTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHH---
T ss_pred ------ccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHH---
Confidence 0112344666654222455678999999999999875432 345778999999888766654322111
Q ss_pred hcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccH
Q 003195 318 NAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYT 397 (840)
Q Consensus 318 ~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~ 397 (840)
++. .++. +..+|.|.+.++++ +..+|..++..++.+ + +..
T Consensus 151 ------------------------aL~----~~~~---~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~----~----~~~ 190 (280)
T 1oyz_A 151 ------------------------AIS----VIND---KATIPLLINLLKDP-NGDVRNWAAFAININ----K----YDN 190 (280)
T ss_dssp ------------------------HHH----TC------CCHHHHHHHHTCS-SHHHHHHHHHHHHHH----T----CCC
T ss_pred ------------------------HHH----hcCC---HHHHHHHHHHHcCC-CHHHHHHHHHHHHhh----c----cCc
Confidence 111 1111 23567777888765 567888899888765 2 234
Q ss_pred HHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHhhchhhhhhhHh
Q 003195 398 SMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSVASDVLSGYHA 477 (840)
Q Consensus 398 ~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~~~~~f~~~~~ 477 (840)
+..++.+...+ .|.++.||..++.+++.+. ++.. ++.+...+ .|+++|..++.+++.+.. +
T Consensus 191 ~~~~~~L~~~l-~d~~~~vR~~A~~aL~~~~---~~~~----~~~L~~~l-~d~~vr~~a~~aL~~i~~----------~ 251 (280)
T 1oyz_A 191 SDIRDCFVEML-QDKNEEVRIEAIIGLSYRK---DKRV----LSVLCDEL-KKNTVYDDIIEAAGELGD----------K 251 (280)
T ss_dssp HHHHHHHHHHT-TCSCHHHHHHHHHHHHHTT---CGGG----HHHHHHHH-TSSSCCHHHHHHHHHHCC----------G
T ss_pred HHHHHHHHHHh-cCCCHHHHHHHHHHHHHhC---CHhh----HHHHHHHh-cCccHHHHHHHHHHhcCc----------h
Confidence 57788888888 7899999999999999875 3333 34444444 345688888888887743 2
Q ss_pred hHhHHHHHhhcC-CchHHH
Q 003195 478 VIVPVIFISRFE-DDKYVS 495 (840)
Q Consensus 478 ~llP~l~~~~~d-~d~~vr 495 (840)
.++|.+.....+ .+++++
T Consensus 252 ~~~~~L~~~l~~~~~~~~~ 270 (280)
T 1oyz_A 252 TLLPVLDTMLYKFDDNEII 270 (280)
T ss_dssp GGHHHHHHHHTTSSCCHHH
T ss_pred hhhHHHHHHHhcCCCcHHH
Confidence 356665544433 344443
No 56
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.05 E-value=4.9e-07 Score=111.79 Aligned_cols=417 Identities=10% Similarity=0.087 Sum_probs=242.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhC--CCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhc
Q 003195 132 VQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSG--SRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMD 209 (840)
Q Consensus 132 VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~--~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ld 209 (840)
.++.|.++...+..-. .+..+..+++.+-+.+. ..+|..+++.|+|++.+......+.-.++++++++.++...+
T Consensus 455 ly~~mrd~L~~lt~l~---~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e 531 (1073)
T 3gjx_A 455 LYKNMRETLVYLTHLD---YVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCE 531 (1073)
T ss_dssp HHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccc
Confidence 4455666655443100 12233444554544443 356999999999999998655544456899999999998876
Q ss_pred cc-----cHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhcc
Q 003195 210 DI-----KETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGI 284 (840)
Q Consensus 210 D~-----~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~ 284 (840)
.. |..||....-.+....+|+. ...+.+..++..|++ ++.++.+.|+.+|++++..+++.|+.
T Consensus 532 ~~~~kd~k~~vas~i~~vlgrY~~wl~-----------~h~~~L~~vl~~L~~-~m~~~~~~vq~aA~~af~~i~~~C~~ 599 (1073)
T 3gjx_A 532 QKRGKDNKAIIASNIMYIVGQYPRFLR-----------AHWKFLKTVVNKLFE-FMHETHDGVQDMACDTFIKIAQKCRR 599 (1073)
T ss_dssp HSCSHHHHHHHHHHHHHHHHHCHHHHH-----------HCHHHHHHHHHHHHH-HTTCCSTTHHHHHHHHHHHHHHHTGG
T ss_pred cccccchhHHHHHHHHHHHhhhHHHHH-----------hCHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 44 55555544334445555552 124577778888874 67777889999999999999999987
Q ss_pred cc--------ccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChh---
Q 003195 285 AI--------RPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTE--- 353 (840)
Q Consensus 285 ~l--------~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~--- 353 (840)
.+ .||+.+|+..+-......++..+..+ .+|++.++.....+
T Consensus 600 ~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~l---------------------------yeav~~vi~~~p~~~~~ 652 (1073)
T 3gjx_A 600 HFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTF---------------------------YEAVGYMIGAQTDQTVQ 652 (1073)
T ss_dssp GGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHH---------------------------HHHHHHHHTTCCCHHHH
T ss_pred HHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHH---------------------------HHHHHHHHHhCCCcchH
Confidence 65 57888888888877776666543322 23333333333221
Q ss_pred --hHhhHHHHHHHHHhc-------cCCC---c--hH-h-HHHHHHHHHHHHhccCccccHHHHHHHHHHhHh--------
Q 003195 354 --SLDQLVPHLARLVRS-------GIGL---N--TR-V-GVASFISLLVQKIGMDIKPYTSMLLRLLFPVVK-------- 409 (840)
Q Consensus 354 --~l~~lvp~L~~~lk~-------~~~~---~--~r-~-~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~-------- 409 (840)
.+..++|...+..+. +.+. + .| . ..+++....+...|..|.|++..+.+.++....
T Consensus 653 ~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~y~~~s~~i~~ 732 (1073)
T 3gjx_A 653 EHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSENISA 732 (1073)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222222222111 0000 1 11 1 345566677888899999998888776654421
Q ss_pred --------hcCcHH------HHHHHHHHHHHhhhcCC-HHH-HHHHHHHHHH----hhc-CChhhhHH-HHHHHHHHHhh
Q 003195 410 --------EEKSAA------AKRAFASACASVLKYAT-PSQ-AQKLIEETAA----LHI-DDKNSQIS-CAILLKSYSSV 467 (840)
Q Consensus 410 --------~d~~~~------Vr~~a~~Alg~l~~~~~-~~~-~~~li~~l~~----~~~-~d~~~r~~-~~~~i~ai~~~ 467 (840)
..+.+. ||++...-+...+.... .+. ...+++++.+ -|. ..++.|.. +-.+...+...
T Consensus 733 ~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k 812 (1073)
T 3gjx_A 733 AIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNK 812 (1073)
T ss_dssp HHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHH
T ss_pred HHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence 012232 23333333333333332 222 2445555554 343 23444432 33444455555
Q ss_pred chhhhhhhHhhHhHHHHHh---h----cCCchHHHHHHHHHHHHhcCCChhhHH----hhHHHHHHHHHhhhcCCCHHHH
Q 003195 468 ASDVLSGYHAVIVPVIFIS---R----FEDDKYVSDLFEELWEENTSGDRVTLQ----LYLGEIVSLICEGIASSSWSSK 536 (840)
Q Consensus 468 ~~~~f~~~~~~llP~l~~~---~----~d~d~~vr~~~~~i~~~~~~~~~~~i~----~yl~~Il~~l~~~L~d~s~~vR 536 (840)
.+..+.+....++..+|.. | +++-|+.|..|-++...+...+...+- ...+.+++.+.-++++...++-
T Consensus 813 ~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~ 892 (1073)
T 3gjx_A 813 LGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVA 892 (1073)
T ss_dssp HGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred HHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHH
Confidence 5555555555555554432 1 246788888777777766554433332 2345577777778899999999
Q ss_pred HHHHHHHHHHHHHhCc-------chhhhHHHHHHHHHHhcCCCC----chhHHHHHHHHHHHHHh
Q 003195 537 RKSAKAICKLGEILGE-------SLSNYHHVLLESIMKEVPGRL----WEGKDALLYAIGSISTS 590 (840)
Q Consensus 537 ~~Aa~~L~~La~~~~~-------~l~~~l~~llp~L~~~l~~r~----~~~Ke~vl~aL~~l~~~ 590 (840)
..+.+.+-++...... -+..|+-.++.-+...+.+.. +.....+|.-+..++..
T Consensus 893 ~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~~~~~~i~~v~td~~h~~~f~~q~~il~~l~~~~~~ 957 (1073)
T 3gjx_A 893 DTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEE 957 (1073)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTCTTCGGGHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhCchHhhhhhHHHHHHHHHHHHHHc
Confidence 9999998888865442 123355556666666665543 44566677777777653
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.99 E-value=2.6e-09 Score=129.32 Aligned_cols=211 Identities=18% Similarity=0.264 Sum_probs=163.1
Q ss_pred hhHHhHHHHHHHHhh--hhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCC-
Q 003195 93 RGAAFGFSKIAKQAG--DALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSR- 169 (840)
Q Consensus 93 ~gA~~~l~~I~~~~~--~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~- 169 (840)
+||+.+++.|++..+ ..++||+-.++|.++..+.|..+.||+|+.....+++...+. .....++|.|+..+.+.
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~ 146 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNP---VAIKALLPHLTNAIVETN 146 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCG---GGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHhcccc
Confidence 899999999996653 477999999999999999999999999998888888764321 12356677777777544
Q ss_pred ChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH------------HHHhh-hc
Q 003195 170 LWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSL------------TIRLC-DV 236 (840)
Q Consensus 170 ~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~------------~ir~~-~~ 236 (840)
.|..+.+|+..+..+.+.. ++++..++++|+|.+..+|-|.|+.|.++|.+++..+..+ ++... +|
T Consensus 147 kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p 225 (986)
T 2iw3_A 147 KWQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP 225 (986)
T ss_dssp CHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcCh
Confidence 5999999999999999876 6889999999999999999999999999998777664321 11111 11
Q ss_pred ccc--------c----cchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhh--ccccccchHHHHHHHHHhcc
Q 003195 237 TLT--------E----ISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGA--GIAIRPHLSDLVSCMLESLS 302 (840)
Q Consensus 237 ~~~--------~----~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~--g~~l~p~lp~Lv~~Ll~~ls 302 (840)
... + ..-..+.+..+.|.|. +||..+...++..+.-++.+|++-. +....||+|.|+|.+-....
T Consensus 226 ~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~-r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~ 304 (986)
T 2iw3_A 226 TEVPETVHLLGATTFVAEVTPATLSIMVPLLS-RGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFA 304 (986)
T ss_dssp THHHHHHHHHTTCCCCSCCCHHHHHHHHHHHH-HHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTT
T ss_pred hhhHHHHHHhhcCeeEeeecchhHHHHHHHHH-hhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhh
Confidence 110 0 0112357888899775 8999888889999999999999965 45689999999999987654
Q ss_pred Cc-hhHh
Q 003195 303 SL-EDQG 308 (840)
Q Consensus 303 ~~-ep~~ 308 (840)
.. .|++
T Consensus 305 ~~~~pe~ 311 (986)
T 2iw3_A 305 TIADPEA 311 (986)
T ss_dssp TCCSHHH
T ss_pred ccCCHHH
Confidence 32 3444
No 58
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.95 E-value=5e-07 Score=111.70 Aligned_cols=419 Identities=14% Similarity=0.137 Sum_probs=236.6
Q ss_pred CccchHH---HHHHHhhhcCCchHHHHHHHHh----cc-ccchhhhhhHHhHHHHHHHHhhh-hhchhhhhHHHHHHhhc
Q 003195 55 GKLSTYK---ELCNLANEMGQPDLIYKFMDLA----NY-QVSLNSKRGAAFGFSKIAKQAGD-ALKPHLRLLIPKLVRFQ 125 (840)
Q Consensus 55 ~~~styk---~l~~lA~~~g~p~lv~~fm~la----~~-~~~w~sr~gA~~~l~~I~~~~~~-~l~~~l~~lvP~L~~~~ 125 (840)
|+++-|| +.+...+.++..+....+++.. +. ...|..++++.|++|+|+....+ .-+++|++++|.|+...
T Consensus 451 ~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~ 530 (1073)
T 3gjx_A 451 DSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLC 530 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccc
Confidence 4455554 4444445666555544444432 22 23499999999999999832222 33478999999998877
Q ss_pred CCC-----CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCch-------hh
Q 003195 126 YDP-----DKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFD-------QV 193 (840)
Q Consensus 126 ~Dp-----~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~-------~l 193 (840)
..+ .+.||..++-+.+....-. ..-.+++++++..|++.+.+++.+|+++||.||..+.+.+... +.
T Consensus 531 e~~~~kd~k~~vas~i~~vlgrY~~wl-~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~ 609 (1073)
T 3gjx_A 531 EQKRGKDNKAIIASNIMYIVGQYPRFL-RAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEV 609 (1073)
T ss_dssp HHSCSHHHHHHHHHHHHHHHHHCHHHH-HHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCS
T ss_pred ccccccchhHHHHHHHHHHHhhhHHHH-HhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 665 3455554433443332110 1124579999999999999999999999999999999866532 34
Q ss_pred hHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhc--c----------cC
Q 003195 194 GKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAE--G----------IL 261 (840)
Q Consensus 194 ~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~--g----------L~ 261 (840)
.||+.+|+..+.....+..+. ....+..+++.+. ..... ...-...++.++|.+.++ . +.
T Consensus 610 ~p~i~~il~~~~~~~~~l~~~---~~~~lyeav~~vi-~~~p~----~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~ 681 (1073)
T 3gjx_A 610 MPFIDEILNNINTIICDLQPQ---QVHTFYEAVGYMI-GAQTD----QTVQEHLIEKYMLLPNQVWDSIIQQATKNVDIL 681 (1073)
T ss_dssp SCHHHHHHTSHHHHHTTCCHH---HHHHHHHHHHHHH-TTCCC----HHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGG
T ss_pred chHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHH-HhCCC----cchHHHHHHHHHHHHHHHHHHHHHHhhcCchhc
Confidence 679999999888877776543 3334455554432 22111 111245677777766542 1 11
Q ss_pred CchhHHHHHH--HHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccch---hhhHHHHHhhccC
Q 003195 262 SKVDSISKAS--IGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQT---EKLENLRISIAKG 336 (840)
Q Consensus 262 s~~~evr~~a--l~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~---~~~d~~R~~~~~~ 336 (840)
.+..-++..+ +.+...+++..|..+.|++..+.|.+++.-.... +.+.......|... ......|. ++.
T Consensus 682 ~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~y~~~s----~~i~~~v~~~g~~~~~~~~~~~~r~--ik~ 755 (1073)
T 3gjx_A 682 KDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKCLS----ENISAAIQANGEMVTKQPLIRSMRT--VKR 755 (1073)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCGGGGSSHHHHHHHH--HHH
T ss_pred cChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhCCchhhccHHHHHHHH--HHH
Confidence 1222234332 6677788888999888888888887776533111 01111111111100 11111221 110
Q ss_pred CcHHHHHHHHHhhcCh--hhHhhHHHHHHHHH----hccCCCchH-hHHHHHHHHHHHHhccCccccHHHHHHHHHHh--
Q 003195 337 SPMWDTLDLCINVVDT--ESLDQLVPHLARLV----RSGIGLNTR-VGVASFISLLVQKIGMDIKPYTSMLLRLLFPV-- 407 (840)
Q Consensus 337 s~l~eal~~~~~~~d~--~~l~~lvp~L~~~l----k~~~~~~~r-~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~-- 407 (840)
-+..-++.++...++ .+...++|.+++.+ ++.+ ...| .+.+.++..++.++|..+.|.++.++..++..
T Consensus 756 -eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~-p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl 833 (1073)
T 3gjx_A 756 -ETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNV-PAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTL 833 (1073)
T ss_dssp -HHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSC-GGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCC-cccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence 011223333333321 23455666666554 2221 1123 36788999999999999999999999886543
Q ss_pred --Hh--hcCcHHHHHHHHHHHHHhhhcCC-------HHHHHHHHHHHHHhhc-CChhhhHHHH----HHHHHHHh---hc
Q 003195 408 --VK--EEKSAAAKRAFASACASVLKYAT-------PSQAQKLIEETAALHI-DDKNSQISCA----ILLKSYSS---VA 468 (840)
Q Consensus 408 --l~--~d~~~~Vr~~a~~Alg~l~~~~~-------~~~~~~li~~l~~~~~-~d~~~r~~~~----~~i~ai~~---~~ 468 (840)
+. .+.+|+.|..+..=+..+...|. .+.+..+++.+.=... .+.+.-.++- .++..+.. .+
T Consensus 834 ~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~~~~ 913 (1073)
T 3gjx_A 834 NMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAA 913 (1073)
T ss_dssp HHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcChHHH
Confidence 31 24678999888887777776653 3344555555433222 2222222222 33333332 12
Q ss_pred hhhhhhhHhhHhHHHHHhhcCC
Q 003195 469 SDVLSGYHAVIVPVIFISRFED 490 (840)
Q Consensus 469 ~~~f~~~~~~llP~l~~~~~d~ 490 (840)
..-|+.|+-.++.-+|..+.|.
T Consensus 914 ~~F~~~~~~~~~~~i~~v~td~ 935 (1073)
T 3gjx_A 914 QSFYQTYFCDILQHIFSVVTDT 935 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHHHhCc
Confidence 2334555555555566556653
No 59
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.92 E-value=8.1e-08 Score=99.08 Aligned_cols=234 Identities=14% Similarity=0.093 Sum_probs=166.7
Q ss_pred HHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHH--HH--HHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhchhhhhhh
Q 003195 401 LRLLFPVVKEEKSAAAKRAFASACASVLKYATPS--QA--QKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGY 475 (840)
Q Consensus 401 L~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~--~~--~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~ 475 (840)
++.++..+ .+.++.+|..++.+++.+....++. .+ ...++.+.+.+. +++..|..++.+++.++...++.-...
T Consensus 4 i~~L~~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 4 VEKLVKLL-TSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 56777777 6677999999999999998655421 11 135677777775 467889999999999987644432222
Q ss_pred H-hhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcc
Q 003195 476 H-AVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYL-GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGES 553 (840)
Q Consensus 476 ~-~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl-~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~ 553 (840)
. ...+|.+.....+++++++..+..++..+....+....... ...++.+.+.+.++++.+|..|+.+|+.++...++.
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 2 23677777777788889998877777777654333222222 357888889999999999999999999998643222
Q ss_pred hhhh-HHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 003195 554 LSNY-HHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQV 632 (840)
Q Consensus 554 l~~~-l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l 632 (840)
.... -..++|.|.+.+....+..|..++.+|..++.+....... -.-...++.+.+.+++.+..+|..|+.+|+.+
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~---l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKA---IVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHH---HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH---HHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 1111 2458899999999888999999999999998643321100 00133567788888888999999999999999
Q ss_pred HHHcCC
Q 003195 633 IKAFRD 638 (840)
Q Consensus 633 ~~~~~~ 638 (840)
...-++
T Consensus 240 ~~~~~~ 245 (252)
T 4hxt_A 240 KSGGWL 245 (252)
T ss_dssp HHTCBC
T ss_pred HcCCCc
Confidence 986654
No 60
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.91 E-value=3.3e-06 Score=97.66 Aligned_cols=401 Identities=13% Similarity=0.058 Sum_probs=210.9
Q ss_pred hhhhHHhHHHHHHHHhh---hhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHH-HHHHHHHHhh
Q 003195 91 SKRGAAFGFSKIAKQAG---DALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLD-LIFDDLLIQS 166 (840)
Q Consensus 91 sr~gA~~~l~~I~~~~~---~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~-~Il~~Ll~~l 166 (840)
..||++-.+.++.++.+ ...++ -+|.|..++..+++.++..+...+..+............. -.+|.|+..+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL 99 (584)
T 3l6x_A 24 HERGSLASLDSLRKGGPPPPNWRQP----ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLL 99 (584)
T ss_dssp ----------------CCCCCCCCC----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGG
T ss_pred cccchHHHHHHHHhcCCCCCCcccc----cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHH
Confidence 34688888888887632 22233 4666666778899999988877777777533222222222 2567888888
Q ss_pred CCCChhHHHHHHHHHHHHHccCCch---hhhHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 003195 167 GSRLWRSREASCLSLADIIQGRKFD---QVGKHLRRIWTAAFRAMDD-IKETVRTAGDKLCRSVTSLTIRLCDVTLTEIS 242 (840)
Q Consensus 167 ~~~~wrvR~aac~Al~~Ll~~~~~~---~l~~~L~~l~~~l~~~ldD-~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~ 242 (840)
.+.+..+|+.|+.||.+|..+...+ .+.. ...++.+.+.|.. ....+++.|..++++++. ++.
T Consensus 100 ~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~--~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-----~~~------ 166 (584)
T 3l6x_A 100 DHPKKEVHLGACGALKNISFGRDQDNKIAIKN--CDGVPALVRLLRKARDMDLTEVITGTLWNLSS-----HDS------ 166 (584)
T ss_dssp GCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHH--TTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-----SGG------
T ss_pred CCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH--cCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-----Cch------
Confidence 9999999999999999998652211 1222 1456777777775 567788888777777743 111
Q ss_pred hHHhHHHhHHHHHHhc------ccC-----------CchhHHHHHHHHHHHHHHHhh---ccccccchHHHHHHHHHhcc
Q 003195 243 DARQSMDIVLPFLLAE------GIL-----------SKVDSISKASIGVVMKLVKGA---GIAIRPHLSDLVSCMLESLS 302 (840)
Q Consensus 243 ~~~~~l~~lLP~Ll~~------gL~-----------s~~~evr~~al~~L~~la~~~---g~~l~p~lp~Lv~~Ll~~ls 302 (840)
....++...+|.|++. |.. +++.+++..+..+|.+++... ...+..+ +-+++.|+..+.
T Consensus 167 ~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~-~Gli~~LV~~L~ 245 (584)
T 3l6x_A 167 IKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLREC-DGLVDALIFIVQ 245 (584)
T ss_dssp GHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHS-TTHHHHHHHHHH
T ss_pred hhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CCcHHHHHHHHH
Confidence 1222334456666531 211 224688889999999987532 1222221 234555554443
Q ss_pred CchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHH---HHHHHhccCCCchHhHHH
Q 003195 303 SLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPH---LARLVRSGIGLNTRVGVA 379 (840)
Q Consensus 303 ~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~---L~~~lk~~~~~~~r~~a~ 379 (840)
+. ......+....+ . ...++..+....+.+ +|. +.+...+
T Consensus 246 ~~-----------~~~~~~~~~~~e----n------av~aL~NLs~~~~~e-----~~~~~~~~~~~~~----------- 288 (584)
T 3l6x_A 246 AE-----------IGQKDSDSKLVE----N------CVCLLRNLSYQVHRE-----IPQAERYQEAAPN----------- 288 (584)
T ss_dssp HH-----------HHTTCCSCHHHH----H------HHHHHHHHHTTHHHH-----STTCCC------------------
T ss_pred Hh-----------hcccCccHHHHH----H------HHHHHHHhhcccccc-----ccchhhhhhhccc-----------
Confidence 10 000000000000 0 001111111111100 110 0000000
Q ss_pred HHHHHHHHHhccCccc-cHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHH------HH--HHHHHHHHHhhc-C
Q 003195 380 SFISLLVQKIGMDIKP-YTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS------QA--QKLIEETAALHI-D 449 (840)
Q Consensus 380 ~~l~~L~~~~~~~~~p-~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~------~~--~~li~~l~~~~~-~ 449 (840)
.-.+.. ......+.. +....++.++..+....+..+++.++.|+..++...... .+ ..-++.|.+++. +
T Consensus 289 ~~~~~~-~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~ 367 (584)
T 3l6x_A 289 VANNTG-TSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE 367 (584)
T ss_dssp --------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS
T ss_pred cccccc-ccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC
Confidence 000000 011112211 345677888888844467999999999999998643221 11 244677777775 5
Q ss_pred ChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCC--------chHHHHHHHHHHHHhcCCChhhHHhhH-HHH
Q 003195 450 DKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFED--------DKYVSDLFEELWEENTSGDRVTLQLYL-GEI 520 (840)
Q Consensus 450 d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~--------d~~vr~~~~~i~~~~~~~~~~~i~~yl-~~I 520 (840)
++..+..++.+++.++...... ...-...+|-+....... .+++...+..++..++.+.+...+... ...
T Consensus 368 ~~~v~~~A~~aL~nLs~~~~~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~ 446 (584)
T 3l6x_A 368 HERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQG 446 (584)
T ss_dssp CHHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred CHHHHHHHHHHHHHHhCChhHH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Confidence 6778889999999998754321 112234666554433222 345665555666566555433333222 245
Q ss_pred HHHHHhhhcCC--CHHHHHHHHHHHHHHHH
Q 003195 521 VSLICEGIASS--SWSSKRKSAKAICKLGE 548 (840)
Q Consensus 521 l~~l~~~L~d~--s~~vR~~Aa~~L~~La~ 548 (840)
++.+...+.+. +.++++.|+.+|..|+.
T Consensus 447 I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 447 IEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 77777777775 88999999999999985
No 61
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.89 E-value=9e-08 Score=99.17 Aligned_cols=221 Identities=12% Similarity=0.113 Sum_probs=148.2
Q ss_pred HHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhh-hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHH
Q 003195 76 IYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHL-RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEH 154 (840)
Q Consensus 76 v~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l-~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~ 154 (840)
...|..+..+. +...++.|+.+|..++.+..+..+..+ ...+|.|...+.++++.||..+..++..+..+.+......
T Consensus 14 ~~~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 14 LPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HHHHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34444444443 357778888899877765433332222 2689999999999999999999999999997554444443
Q ss_pred HHH-HHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh
Q 003195 155 LDL-IFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRL 233 (840)
Q Consensus 155 ~~~-Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~ 233 (840)
.+. .++.|+..+.++++.+|+.++.+|+++........-.-.-...++.+.+.+++..+.||..|..++..++..
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~---- 168 (252)
T 4db8_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG---- 168 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS----
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC----
Confidence 333 788899999999999999999999999765432211111225788889999999999999887766665320
Q ss_pred hhccccccchHHhHH-HhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccch-HHHHHHHHHhccCchhHh
Q 003195 234 CDVTLTEISDARQSM-DIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHL-SDLVSCMLESLSSLEDQG 308 (840)
Q Consensus 234 ~~~~~~~~~~~~~~l-~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~l-p~Lv~~Ll~~ls~~ep~~ 308 (840)
. ......++ ..++|.|++ -+.+++.++|..++.+|.+++........... ...++.|++.+.+..+.+
T Consensus 169 -~-----~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v 238 (252)
T 4db8_A 169 -G-----NEQIQAVIDAGALPALVQ-LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 238 (252)
T ss_dssp -C-----HHHHHHHHHTTCHHHHHH-GGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHH
T ss_pred -C-----hHHHHHHHHCCCHHHHHH-HHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHH
Confidence 0 00111111 346777764 35567789999999999999853322211111 246788888777655544
No 62
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.87 E-value=1.2e-07 Score=94.89 Aligned_cols=192 Identities=14% Similarity=0.104 Sum_probs=143.4
Q ss_pred ccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhc
Q 003195 390 GMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVA 468 (840)
Q Consensus 390 ~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~ 468 (840)
.....++.+...+.++..| .+.++.||..++.+++.+.. . ..++.+.+.+. +|+.+|..++.+++.+..
T Consensus 5 ~~~~~~~~~~~~~~~i~~L-~~~~~~vr~~A~~~L~~~~~---~----~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-- 74 (201)
T 3ltj_A 5 HHHHHHTDPEKVEMYIKNL-QDDSYYVRRAAAYALGKIGD---E----RAVEPLIKALKDEDAWVRRAAADALGQIGD-- 74 (201)
T ss_dssp --CCCCCCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHCC---G----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred cccccccCCcchHHHHHHh-cCCCHHHHHHHHHHHHhcCC---h----hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--
Confidence 3455677788899999999 88999999999999987642 2 23455555553 467788888888877632
Q ss_pred hhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 003195 469 SDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGE 548 (840)
Q Consensus 469 ~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~ 548 (840)
...+|.+.....|+++.+|......+..+.. ++.++.+.+.+.|+++.+|..|+.+|+.+..
T Consensus 75 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 75 --------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 1245666666788899999876666654322 2355666778899999999999999998742
Q ss_pred HhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHH
Q 003195 549 ILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSC 628 (840)
Q Consensus 549 ~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~ 628 (840)
+..++.|.+.+.+.++.+|..++.+|+.+. -+..++.+.+.+++.+..+|..|..+
T Consensus 137 ----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--------------~~~~~~~L~~~l~d~~~~vr~~A~~a 192 (201)
T 3ltj_A 137 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIG--------------GERVRAAMEKLAETGTGFARKVAVNY 192 (201)
T ss_dssp ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------------SHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------------chhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 246678888888888999999999998872 14566667777778899999999999
Q ss_pred HHHHH
Q 003195 629 LEQVI 633 (840)
Q Consensus 629 L~~l~ 633 (840)
|+++-
T Consensus 193 L~~l~ 197 (201)
T 3ltj_A 193 LETHK 197 (201)
T ss_dssp HHHCC
T ss_pred HHHHH
Confidence 98764
No 63
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.81 E-value=9.5e-08 Score=96.36 Aligned_cols=122 Identities=14% Similarity=0.060 Sum_probs=89.1
Q ss_pred hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhh
Q 003195 115 RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVG 194 (840)
Q Consensus 115 ~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~ 194 (840)
+..+|.|...+.|+++.||..+...+..+-. +..++.|+..+.|++|.+|..++.+|+.+-.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 3467888888899999999999888877653 1344557777889999999999999988732
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHH
Q 003195 195 KHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGV 274 (840)
Q Consensus 195 ~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~ 274 (840)
+..++.+.+.++|..+.||.+|..++..++ + ...+|.|.. .+.++++.||..++.+
T Consensus 80 ---~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-------~-------------~~~~~~L~~-~l~d~~~~vr~~a~~a 135 (211)
T 3ltm_A 80 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIG-------D-------------ERAVEPLIK-ALKDEDWFVRIAAAFA 135 (211)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-------C-------------GGGHHHHHH-HTTCSSHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------c-------------HHHHHHHHH-HHhCCCHHHHHHHHHH
Confidence 134455666789999999998866654431 1 123555553 3566788999999999
Q ss_pred HHHH
Q 003195 275 VMKL 278 (840)
Q Consensus 275 L~~l 278 (840)
|+.+
T Consensus 136 L~~~ 139 (211)
T 3ltm_A 136 LGEI 139 (211)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 8876
No 64
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.80 E-value=2.5e-07 Score=95.33 Aligned_cols=233 Identities=15% Similarity=0.096 Sum_probs=164.7
Q ss_pred HHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHH-HHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHH--H
Q 003195 359 VPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTS-MLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS--Q 435 (840)
Q Consensus 359 vp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~-~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~--~ 435 (840)
+|.+++.++++ +..+|..|+.+|..++...+.....+.+ ..++.++..+ .+.+..+|..++.+++.+....++. .
T Consensus 4 i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 4 VEKLVKLLTST-DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 57777888775 4667888999998887554322222222 5788888888 6788999999999999998643221 1
Q ss_pred H--HHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhchhhhhhhH-hhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChh
Q 003195 436 A--QKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYH-AVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRV 511 (840)
Q Consensus 436 ~--~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~-~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~ 511 (840)
+ ...++.+...+. +++..|..++.+++.++...++...... ...+|.+.....+++++++.....++..+....+.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 1 135667777665 4678899999999999865544332222 23677777777788888888777777666654433
Q ss_pred hHH-hhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhh-HHHHHHHHHHhcCCCCchhHHHHHHHHHHHHH
Q 003195 512 TLQ-LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNY-HHVLLESIMKEVPGRLWEGKDALLYAIGSIST 589 (840)
Q Consensus 512 ~i~-~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~-l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~ 589 (840)
... ..-..+++.+.+.+.++++.+|..|+.+|+.++...++..... -..++|.|.+.+...++..|+.++.+|..+..
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 222 2224578889999999999999999999999996322222111 24578899999988888999999999999987
Q ss_pred hccc
Q 003195 590 SCHK 593 (840)
Q Consensus 590 ~~~~ 593 (840)
....
T Consensus 242 ~~~~ 245 (252)
T 4hxt_A 242 GGWL 245 (252)
T ss_dssp TCBC
T ss_pred CCCc
Confidence 5543
No 65
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.79 E-value=2.2e-07 Score=92.82 Aligned_cols=125 Identities=14% Similarity=0.044 Sum_probs=88.2
Q ss_pred hhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchh
Q 003195 113 HLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQ 192 (840)
Q Consensus 113 ~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~ 192 (840)
.-+...|.++.++.|+++.||..+...+..+-.. ..++.|+..+.|++|.+|..++.+|+.+-. +
T Consensus 11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~----------~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----~- 75 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE----------RAVEPLIKALKDEDAWVRRAAADALGQIGD----E- 75 (201)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----G-
T ss_pred cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----H-
Confidence 3446778888888999999999988888776531 234556777788899999999999988631 1
Q ss_pred hhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHH
Q 003195 193 VGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASI 272 (840)
Q Consensus 193 l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al 272 (840)
..++.+.+.++|..+.||.+|..++..++ + ...+|.|.. .+.++++.||..++
T Consensus 76 ------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-------~-------------~~~~~~L~~-~l~d~~~~vr~~a~ 128 (201)
T 3ltj_A 76 ------RAVEPLIKALKDEDGWVRQSAAVALGQIG-------D-------------ERAVEPLIK-ALKDEDWFVRIAAA 128 (201)
T ss_dssp ------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC-------C-------------GGGHHHHHH-HTTCSSHHHHHHHH
T ss_pred ------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------c-------------HHHHHHHHH-HHcCCCHHHHHHHH
Confidence 33455566788999999998866654431 1 123454442 35667788999999
Q ss_pred HHHHHHH
Q 003195 273 GVVMKLV 279 (840)
Q Consensus 273 ~~L~~la 279 (840)
.+|+.+.
T Consensus 129 ~aL~~~~ 135 (201)
T 3ltj_A 129 FALGEIG 135 (201)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 9888763
No 66
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.77 E-value=2.7e-07 Score=93.04 Aligned_cols=188 Identities=14% Similarity=0.110 Sum_probs=136.7
Q ss_pred HHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhchhhhhhhH
Q 003195 398 SMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYH 476 (840)
Q Consensus 398 ~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~ 476 (840)
+..++.++..+ .|++..||..++.+++.+.. + ..++.+.+.+. +|+.+|..++.+++.+..
T Consensus 18 ~~~~~~L~~~L-~~~~~~vR~~A~~~L~~~~~---~----~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNL-QDDSYYVRRAAAYALGKIGD---E----RAVEPLIKALKDEDAWVRRAAADALGQIGD---------- 79 (211)
T ss_dssp GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC---G----GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------
T ss_pred HhHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC---c----cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------
Confidence 45567777888 78999999999999987642 2 23444555553 467789888888877642
Q ss_pred hhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhh
Q 003195 477 AVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSN 556 (840)
Q Consensus 477 ~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~ 556 (840)
...+|.+.....|+++.||......+..+.. ++.++.+.+.+.|+++.+|..|+.+|+.+. .
T Consensus 80 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~---- 141 (211)
T 3ltm_A 80 ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG----D---- 141 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----C----
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----C----
Confidence 2245656666788899999877666654422 234566777889999999999999999873 2
Q ss_pred hHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHc
Q 003195 557 YHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAF 636 (840)
Q Consensus 557 ~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~ 636 (840)
+..+|.|.+.+.+.++.+|..++.+|+.+. -+..++.+.+.+++.+..+|..|..+|+.+-...
T Consensus 142 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--------------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 142 --ERAVEPLIKALKDEDGWVRQSAADALGEIG--------------GERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 245678888888888999999999998772 1556677777778899999999999999887654
Q ss_pred C
Q 003195 637 R 637 (840)
Q Consensus 637 ~ 637 (840)
+
T Consensus 206 ~ 206 (211)
T 3ltm_A 206 H 206 (211)
T ss_dssp -
T ss_pred C
Confidence 3
No 67
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.76 E-value=1.7e-07 Score=94.27 Aligned_cols=193 Identities=13% Similarity=0.109 Sum_probs=135.4
Q ss_pred HHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhh-hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHH
Q 003195 75 LIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHL-RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDE 153 (840)
Q Consensus 75 lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l-~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~ 153 (840)
....+..+..+. ++.-|+.|+.+|+.++.+..+..+..+ ...+|.|..++.++++.||..+..++..+..+.+.....
T Consensus 13 ~~~~l~~LL~s~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 13 ELPQMVQQLNSP-DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp CHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hhHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 345566666554 578889999999999865533332222 268999999999999999999999999998655443333
Q ss_pred HHH-HHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Q 003195 154 HLD-LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKH-LRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTI 231 (840)
Q Consensus 154 ~~~-~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~-L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~i 231 (840)
.++ ..++.|+..+.++++++|+.+|.+|.++..+.+ +..... -...++.+.+.+++..+.||..|..++.++....
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~- 169 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG- 169 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCH-HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-
Confidence 332 377888999999999999999999999986432 111111 2357888899999999999998877776663210
Q ss_pred HhhhccccccchHHhHH-HhHHHHHHhcccCCchhHHHHHHHHHHHHHHH
Q 003195 232 RLCDVTLTEISDARQSM-DIVLPFLLAEGILSKVDSISKASIGVVMKLVK 280 (840)
Q Consensus 232 r~~~~~~~~~~~~~~~l-~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~ 280 (840)
+ .....+. ...+|.|.. -+.+++.++|..++.+|.++++
T Consensus 170 ---~------~~~~~~~~~g~i~~L~~-ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 ---N------EQKQAVKEAGALEKLEQ-LQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp ---H------HHHHHHHHTTHHHHHHH-GGGCSCHHHHHHHHHHHHHHCC
T ss_pred ---c------HHHHHHHHCCCHHHHHH-HHhCCCHHHHHHHHHHHHHHhc
Confidence 0 0111111 235676663 3556778999999999988863
No 68
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.75 E-value=3.2e-07 Score=94.99 Aligned_cols=228 Identities=9% Similarity=0.030 Sum_probs=159.5
Q ss_pred HHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccH-HHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHH--H
Q 003195 359 VPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYT-SMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS--Q 435 (840)
Q Consensus 359 vp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~-~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~--~ 435 (840)
.|.+.+.++++ +..++..|+..|..+..........+. ...++.++..+ .+.++.++..++.+++.+....+.. .
T Consensus 14 ~~~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 14 LPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp HHHHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 35666667765 677888999999766654322222222 25788899998 6778999999999999998643221 1
Q ss_pred H--HHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhchhhhhhhH-hhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChh
Q 003195 436 A--QKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYH-AVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRV 511 (840)
Q Consensus 436 ~--~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~-~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~ 511 (840)
+ ...++.+.+.+. +++..|..++.+++.++........... ...+|.+.....++++.++.....++..+..+.+.
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 1 125677777775 5678899999999999876554422222 33778777777788888988777777666654433
Q ss_pred hHHhh-HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH-HHHHHHHHHhcCCCCchhHHHHHHHHHHHH
Q 003195 512 TLQLY-LGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH-HVLLESIMKEVPGRLWEGKDALLYAIGSIS 588 (840)
Q Consensus 512 ~i~~y-l~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l-~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~ 588 (840)
..... -..+++.+.+.+.+++..+|..|+.+|+.++...++...... ..++|.|.+.+.+.+...|+.++.+|..++
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 22222 245788888999999999999999999999853222222222 347889999998888899999888887664
No 69
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.75 E-value=3.9e-06 Score=95.37 Aligned_cols=388 Identities=14% Similarity=0.059 Sum_probs=204.8
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHH-HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHH
Q 003195 118 IPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHL-DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKH 196 (840)
Q Consensus 118 vP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~-~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~ 196 (840)
+|.|.+++..+++.+|..+...+..+..+.+....... .-.+|.|+..+.+++..+++.|+.||.+|..+.+ .....
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~--~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRST--TNKLE 81 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH--HHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH--HHHHH
Confidence 67777778889999999988888888754322111111 2357778888888899999999999999987522 22221
Q ss_pred H--HHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhccc--------CC---
Q 003195 197 L--RRIWTAAFRAMD-DIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGI--------LS--- 262 (840)
Q Consensus 197 L--~~l~~~l~~~ld-D~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL--------~s--- 262 (840)
+ ...++.+.+.|. +..+.+|+.|..++.+++. .+. ....++...+|.|++- + .+
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~-----~~~------~~~~i~~g~i~~Lv~l-l~~~~s~~~~~~~~ 149 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS-----TDE------LKEELIADALPVLADR-VIIPFSGWCDGNSN 149 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-----SSS------THHHHHHHHHHHHHHH-TTHHHHTCC-----
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhc-----CHH------hHHHHHhccHHHHHHH-HhccccccccCccc
Confidence 1 244777888888 7788999988766666642 111 1122334566766631 3 11
Q ss_pred -----chhHHHHHHHHHHHHHHHhhccccccch---HHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhc
Q 003195 263 -----KVDSISKASIGVVMKLVKGAGIAIRPHL---SDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIA 334 (840)
Q Consensus 263 -----~~~evr~~al~~L~~la~~~g~~l~p~l---p~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~ 334 (840)
.+.++...++.+|.+++.. +..+..+ +.++|.|++.+.+... .+.. +....+. +
T Consensus 150 ~~~e~~~~~v~~~a~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~---------~~~~--~~~~~e~----a- 211 (457)
T 1xm9_A 150 MSREVVDPEVFFNATGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVA---------ASRC--DDKSVEN----C- 211 (457)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHH---------HTCT--TCTTHHH----H-
T ss_pred hhcccccHHHHHHHHHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhcc---------ccCC--chHHHHH----H-
Confidence 1345666899999999864 2222222 2466666666542100 0000 0000000 0
Q ss_pred cCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHh---cc------------Ccc-ccHH
Q 003195 335 KGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKI---GM------------DIK-PYTS 398 (840)
Q Consensus 335 ~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~---~~------------~~~-p~~~ 398 (840)
..++..+......+ ++.....+...++.... ......+++...... +. ... -+..
T Consensus 212 -----~~~L~nLs~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (457)
T 1xm9_A 212 -----MCVLHNLSYRLDAE-VPTRYRQLEYNARNAYT---EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHS 282 (457)
T ss_dssp -----HHHHHHHTTTHHHH-SCCHHHHHHHTC-------------------------------CCCCCSSCCGGGGGGSH
T ss_pred -----HHHHHhcccchhcc-Ccchhhhcccccccccc---cccccchhhccchhhhhccccCCccccccCchHHHHHhCc
Confidence 00111111100000 00000111111110000 001111111111000 00 000 1234
Q ss_pred HHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHH--HH-------HHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhc
Q 003195 399 MLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS--QA-------QKLIEETAALHI-DDKNSQISCAILLKSYSSVA 468 (840)
Q Consensus 399 ~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~--~~-------~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~ 468 (840)
..++.++..+....++.+++.++.|++.++....+. .+ ...++.+.+++. ++++.+..++.++..++...
T Consensus 283 ~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred chHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 667788888855567899999999999998654321 12 245678888875 56788888999999987643
Q ss_pred hhhhhhhHhhHhHHHHHhhcCC------chHHHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHHhhhcCC-CHHHHHHHH
Q 003195 469 SDVLSGYHAVIVPVIFISRFED------DKYVSDLFEELWEENTSGDRVTLQLYL-GEIVSLICEGIASS-SWSSKRKSA 540 (840)
Q Consensus 469 ~~~f~~~~~~llP~l~~~~~d~------d~~vr~~~~~i~~~~~~~~~~~i~~yl-~~Il~~l~~~L~d~-s~~vR~~Aa 540 (840)
. .-.-.....+|.+....... ++++.......+..+..+.+...+... ...++.+.+.+.+. +.++++.|+
T Consensus 363 ~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~ 441 (457)
T 1xm9_A 363 L-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAAR 441 (457)
T ss_dssp G-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred H-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHH
Confidence 1 11111233455444333322 234544444444454443322222111 24567777778888 899999999
Q ss_pred HHHHHHH
Q 003195 541 KAICKLG 547 (840)
Q Consensus 541 ~~L~~La 547 (840)
..|..+.
T Consensus 442 ~~L~~~~ 448 (457)
T 1xm9_A 442 LLLSDMW 448 (457)
T ss_dssp HHHHTTS
T ss_pred HHHHHHH
Confidence 9998765
No 70
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.66 E-value=5.9e-07 Score=95.00 Aligned_cols=197 Identities=12% Similarity=0.086 Sum_probs=129.9
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHccCCchh----hhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003195 162 LLIQSGSRLWRSREASCLSLADIIQGRKFDQ----VGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVT 237 (840)
Q Consensus 162 Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~----l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~ 237 (840)
+-+.+.+++|..|..+...+..+++...... ....+..+.+.+-+.+.|.+..|...|..++..+.. .+...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~----~~~~~ 89 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLID----AFASS 89 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHT----TCC--
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH----Hhhhh
Confidence 4578999999999999999999887644221 111222333444456789999999988777766632 22211
Q ss_pred ccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhh
Q 003195 238 LTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAA 317 (840)
Q Consensus 238 ~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~ 317 (840)
.+........+..++|.|+++++.+....+|..++.++..++...+.. ..+++.++..+..-
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-----~~~~e~l~~~l~~K------------- 151 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-----TQSVELVIPFFEKK------------- 151 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-----HHHHHHHGGGGGCS-------------
T ss_pred hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-----HHHHHHHHHHHhcc-------------
Confidence 111122345678899999988888777889999999988887654321 22333333222211
Q ss_pred hcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCcc---
Q 003195 318 NAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIK--- 394 (840)
Q Consensus 318 ~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~--- 394 (840)
...+|.+++.+|..+...+|....
T Consensus 152 -----------------------------------------------------npkv~~~~l~~l~~~l~~fg~~~~~~k 178 (278)
T 4ffb_C 152 -----------------------------------------------------LPKLIAAAANCVYELMAAFGLTNVNVQ 178 (278)
T ss_dssp -----------------------------------------------------CHHHHHHHHHHHHHHHHHHTTTTCCHH
T ss_pred -----------------------------------------------------CHHHHHHHHHHHHHHHHHhCCCcCCch
Confidence 123467788888888888876543
Q ss_pred ccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHH
Q 003195 395 PYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS 434 (840)
Q Consensus 395 p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~ 434 (840)
+.++.+++.+.+.+ +|++..||.++...++.+.+..++.
T Consensus 179 ~~l~~i~~~l~k~l-~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 179 TFLPELLKHVPQLA-GHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HHHHHHGGGHHHHH-TCSSHHHHHHHHHHHHHHHTC----
T ss_pred hHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 45667788888888 8999999999999999998877643
No 71
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.63 E-value=2.1e-05 Score=99.84 Aligned_cols=446 Identities=8% Similarity=0.012 Sum_probs=237.5
Q ss_pred CCchHHHHHHHHhccccchhhhhhHHhHHHHHHHHhh--------------hhhchhhhhHHHHHHhhcCC---------
Q 003195 71 GQPDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAG--------------DALKPHLRLLIPKLVRFQYD--------- 127 (840)
Q Consensus 71 g~p~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~--------------~~l~~~l~~lvP~L~~~~~D--------- 127 (840)
.||+++..++.+.+++ ...++++...|..+++... +.+...++++++.++.++.+
T Consensus 131 ~Wp~ll~~L~~~~~~~--~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~ 208 (1204)
T 3a6p_A 131 HWPDMLIELDTLSKQG--ETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVK 208 (1204)
T ss_dssp TCTTHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5999999999988654 3567888888999987631 12334455666666655543
Q ss_pred ----------CCHhHHHHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCC-chh---
Q 003195 128 ----------PDKNVQDAMAHIWKSLVADPK-RTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRK-FDQ--- 192 (840)
Q Consensus 128 ----------p~~~VR~a~~~iw~~Lv~d~~-~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~-~~~--- 192 (840)
+++.++.++..+++..++--+ ..+-+.-..+++.++..+.+ .++|.+|+.+|..++.... .+.
T Consensus 209 ~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~ 286 (1204)
T 3a6p_A 209 TDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKP 286 (1204)
T ss_dssp TCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGG
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHH
Confidence 234456666666665554321 11111112467777766654 5789999999999998543 221
Q ss_pred hhHHH-HHHHHHHHHHh--------ccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCc
Q 003195 193 VGKHL-RRIWTAAFRAM--------DDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSK 263 (840)
Q Consensus 193 l~~~L-~~l~~~l~~~l--------dD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~ 263 (840)
+-..+ ...+..++... +|....+++.-.+++..++....+.+..... ......+..+++.++. -...+
T Consensus 287 li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~--~~~~~~l~~~l~~lL~-~t~~~ 363 (1204)
T 3a6p_A 287 LMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSD--VETPSNFGKYLESFLA-FTTHP 363 (1204)
T ss_dssp GGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS--CCCCTTHHHHHHHHHH-HHTSS
T ss_pred HHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcccc--ccChhHHHHHHHHHHH-HHhCc
Confidence 11222 11122333332 3444556666666666666544443321100 0112345667777764 23346
Q ss_pred hhHHHHHHHHHHHHHHHhh----ccccccchHHHHHHHHH---hccCchhHhHHHHHHhhhhcccch---hhhHHHHHhh
Q 003195 264 VDSISKASIGVVMKLVKGA----GIAIRPHLSDLVSCMLE---SLSSLEDQGLNYIELHAANAGIQT---EKLENLRISI 333 (840)
Q Consensus 264 ~~evr~~al~~L~~la~~~----g~~l~p~lp~Lv~~Ll~---~ls~~ep~~~~~l~~~a~~~~~~~---~~~d~~R~~~ 333 (840)
+.++-..++..|..+.+.. .+.+.|+++.|++.+.. -+.=.+...-....+..+.++.++ +.+.+.|...
T Consensus 364 ~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~ 443 (1204)
T 3a6p_A 364 SQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQ 443 (1204)
T ss_dssp CHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred cHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHH
Confidence 6788888999999888763 23467888888888833 332111100000011111111111 2233444432
Q ss_pred ccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCC------------------------chHhHHHHHHHHHHHHh
Q 003195 334 AKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGL------------------------NTRVGVASFISLLVQKI 389 (840)
Q Consensus 334 ~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~------------------------~~r~~a~~~l~~L~~~~ 389 (840)
.+.+..+........+..+.+.+.+.+.+.... ....+...++..+...+
T Consensus 444 ------~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~ 517 (1204)
T 3a6p_A 444 ------GEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQM 517 (1204)
T ss_dssp ------HHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 345555555444445666667776665432110 00112222233333322
Q ss_pred ccCc-cccHH-HHHHHHHHhHh--hcCcHHHHHHHHHHHHHhhhcCC--HHHHHHHHHHHHHhhcC-------------C
Q 003195 390 GMDI-KPYTS-MLLRLLFPVVK--EEKSAAAKRAFASACASVLKYAT--PSQAQKLIEETAALHID-------------D 450 (840)
Q Consensus 390 ~~~~-~p~~~-~lL~~Ll~~l~--~d~~~~Vr~~a~~Alg~l~~~~~--~~~~~~li~~l~~~~~~-------------d 450 (840)
.... .++.+ .+++.+++.+. +..++.+|.+.+..+|.+.+... ++.+...++++...+.. .
T Consensus 518 ~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~ 597 (1204)
T 3a6p_A 518 FRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAV 597 (1204)
T ss_dssp HHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHH
T ss_pred hcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHH
Confidence 1111 23333 24444444432 23578899999999988877653 44555666665544321 1
Q ss_pred hhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhc----CCchHHHHHHHHHH--HHhcCCChhhHHhhHHHHHHHH
Q 003195 451 KNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRF----EDDKYVSDLFEELW--EENTSGDRVTLQLYLGEIVSLI 524 (840)
Q Consensus 451 ~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~----d~d~~vr~~~~~i~--~~~~~~~~~~i~~yl~~Il~~l 524 (840)
.+.|..++.++..++..+++.|.+|++.+...+-.... -...+-..++..+. ....+. ......|+..+++-+
T Consensus 598 k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~-~~~~~~~l~~ll~P~ 676 (1204)
T 3a6p_A 598 RNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKN-YERQKVFLEELMAPV 676 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHH
Confidence 25688899999999999999999999988876543221 12333333332221 111121 233445666666666
Q ss_pred HhhhcC
Q 003195 525 CEGIAS 530 (840)
Q Consensus 525 ~~~L~d 530 (840)
.+.+.+
T Consensus 677 ~~~w~~ 682 (1204)
T 3a6p_A 677 ASIWLS 682 (1204)
T ss_dssp HHHHSC
T ss_pred HHHHcc
Confidence 655554
No 72
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.63 E-value=1.3e-05 Score=96.20 Aligned_cols=330 Identities=12% Similarity=0.003 Sum_probs=191.6
Q ss_pred hhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcC---CCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCC
Q 003195 92 KRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQY---DPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGS 168 (840)
Q Consensus 92 r~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~---Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~ 168 (840)
+=+|+.+||.|..+..+. .+..|-.|++ ..++.||..+.-.++.+...... + ++..|...+.+
T Consensus 375 k~sA~aSLGlIh~g~~~~-------gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~---~----~~~lL~~~L~~ 440 (963)
T 4ady_A 375 KFTATASLGVIHKGNLLE-------GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR---D----TTDYLKNIIVE 440 (963)
T ss_dssp HHHHHHHHHHHTSSCTTT-------HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH---H----HHHHHHHHHHH
T ss_pred HHHHHHHhhhhccCchHH-------HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH---H----HHHHHHHHHcC
Confidence 447778999987755322 2333333344 67889999988888887765432 2 22223333322
Q ss_pred CC--------hhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 003195 169 RL--------WRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTE 240 (840)
Q Consensus 169 ~~--------wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~ 240 (840)
.+ ..+|.+||.+||-..-|...++ ++..|..++.|....+|..|.-+ ++-+.+..+
T Consensus 441 ~~~~~~~~~~~~ir~gAaLGLGla~~GS~~ee-------v~e~L~~~L~dd~~~~~~~AalA---LGli~vGTg------ 504 (963)
T 4ady_A 441 NSGTSGDEDVDVLLHGASLGIGLAAMGSANIE-------VYEALKEVLYNDSATSGEAAALG---MGLCMLGTG------ 504 (963)
T ss_dssp HSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHH-------HHHHHHHHHHTCCHHHHHHHHHH---HHHHHTTCC------
T ss_pred ccccccccccHHHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHhcCCHHHHHHHHHH---HhhhhcccC------
Confidence 22 5899999999999876655443 33334444555556677655333 333333222
Q ss_pred cchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcc
Q 003195 241 ISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAG 320 (840)
Q Consensus 241 ~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~ 320 (840)
...++..++..+.+ ...+.+|.++...|+.+. .|.. +.++.+++.|...+.+.+
T Consensus 505 ---n~~ai~~LL~~~~e----~~~e~vrR~aalgLGll~--~g~~------e~~~~li~~L~~~~dp~v----------- 558 (963)
T 4ady_A 505 ---KPEAIHDMFTYSQE----TQHGNITRGLAVGLALIN--YGRQ------ELADDLITKMLASDESLL----------- 558 (963)
T ss_dssp ---CHHHHHHHHHHHHH----CSCHHHHHHHHHHHHHHT--TTCG------GGGHHHHHHHHHCSCHHH-----------
T ss_pred ---CHHHHHHHHHHHhc----cCcHHHHHHHHHHHHhhh--CCCh------HHHHHHHHHHHhCCCHHH-----------
Confidence 23466777777653 235678888888887764 3331 223344444432222222
Q ss_pred cchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHH
Q 003195 321 IQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSML 400 (840)
Q Consensus 321 ~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~l 400 (840)
|.+++-+++. ...|..= ...
T Consensus 559 ------------------------------------------------------Rygaa~algl--AyaGTGn----~~a 578 (963)
T 4ady_A 559 ------------------------------------------------------RYGGAFTIAL--AYAGTGN----NSA 578 (963)
T ss_dssp ------------------------------------------------------HHHHHHHHHH--HTTTSCC----HHH
T ss_pred ------------------------------------------------------HHHHHHHHHH--HhcCCCC----HHH
Confidence 2222222210 1111111 122
Q ss_pred HHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc--CChhhhHHHHHHHHHHHhhchhhhhhhHhh
Q 003195 401 LRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI--DDKNSQISCAILLKSYSSVASDVLSGYHAV 478 (840)
Q Consensus 401 L~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~--~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~ 478 (840)
++.|+..+.+|.+..||+.++.++|.+.-.. ++.+ +.+.+.+. .|+..|..++.++|-++...|. ..
T Consensus 579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~-~e~v----~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~ 647 (963)
T 4ady_A 579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRD-YTTV----PRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QS 647 (963)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS-CSSH----HHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HH
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhccCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HH
Confidence 2222222236778889999999999875332 2333 33333332 5788999999999887643331 22
Q ss_pred HhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcC--CCHHHHHHHHHHHHHHHH
Q 003195 479 IVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIAS--SSWSSKRKSAKAICKLGE 548 (840)
Q Consensus 479 llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d--~s~~vR~~Aa~~L~~La~ 548 (840)
++..+....+|.++.||..+.-.+..+..+...+..+.+..++..+.+.+.| .+...|-.+..+.|-+..
T Consensus 648 aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~a 719 (963)
T 4ady_A 648 AIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNA 719 (963)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence 3444444568999999988777777776666556566778888888888866 467788888888887663
No 73
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.63 E-value=2.7e-05 Score=98.78 Aligned_cols=452 Identities=10% Similarity=0.026 Sum_probs=237.3
Q ss_pred CCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccC-C------------chhhh
Q 003195 128 PDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGR-K------------FDQVG 194 (840)
Q Consensus 128 p~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~-~------------~~~l~ 194 (840)
+.+.||..++.++..++.. ...+.++.++++|+..+.+ +...++.+...|..+.+.. . .+.+.
T Consensus 108 ~~~~vr~kla~~la~Ia~~---d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~ 183 (1204)
T 3a6p_A 108 EENHIKDALSRIVVEMIKR---EWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLT 183 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH---hCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHH
Confidence 5699999999988887642 1113467788888877755 4566888888888776531 0 01234
Q ss_pred HHHHHHHHHHHHHhcccc-------------------HHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHH---HhHH
Q 003195 195 KHLRRIWTAAFRAMDDIK-------------------ETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSM---DIVL 252 (840)
Q Consensus 195 ~~L~~l~~~l~~~ldD~~-------------------~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l---~~lL 252 (840)
..+++|++.+..++.+.. ..++.++.+++.+...|. + ...+. ..++
T Consensus 184 ~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi----~--------~~~i~~~~~~ll 251 (1204)
T 3a6p_A 184 QNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWV----S--------MSHITAENCKLL 251 (1204)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTS----C--------HHHHHTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhcc----C--------HHHHHhccchHH
Confidence 456677777777665421 122333322222211110 0 11111 1367
Q ss_pred HHHHhcccCCchhHHHHHHHHHHHHHHHhhcc--ccccchHHH----HHHHHHhccCchhHhHHHHHHhhhhcccchhhh
Q 003195 253 PFLLAEGILSKVDSISKASIGVVMKLVKGAGI--AIRPHLSDL----VSCMLESLSSLEDQGLNYIELHAANAGIQTEKL 326 (840)
Q Consensus 253 P~Ll~~gL~s~~~evr~~al~~L~~la~~~g~--~l~p~lp~L----v~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~ 326 (840)
+.++. .+. ++++|..|+++|..++....+ ...+.+..+ +..+++.+... +..+++++..
T Consensus 252 ~~l~~-~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~------------~~~~~~e~d~ 316 (1204)
T 3a6p_A 252 EILCL-LLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTA------------DGGGLVEKHY 316 (1204)
T ss_dssp HHHHH-GGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTC------------CCCSCCHHHH
T ss_pred HHHHH-HcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcC------------CCCCCccHHH
Confidence 76652 222 468999999999999975432 112222211 11222221100 0001111111
Q ss_pred HHHHHhhccCCcHHHHHHHHHhh----cChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHh----ccCccccHH
Q 003195 327 ENLRISIAKGSPMWDTLDLCINV----VDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKI----GMDIKPYTS 398 (840)
Q Consensus 327 d~~R~~~~~~s~l~eal~~~~~~----~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~----~~~~~p~~~ 398 (840)
+-.|.-+---..+.+.+..++.. -....+..+++.+.+.++.+ +..+-..++.+...+.+.. ...+.++..
T Consensus 317 e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~-~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~ 395 (1204)
T 3a6p_A 317 VFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHP-SQFLRSSTQMTWGALFRHEILSRDPLLLAIIP 395 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCc-cHHhHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 11110000000011112222221 12345678888888888764 3233334555555454432 123567788
Q ss_pred HHHHHHHH---hHhh--------------cC--c-------HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcC---
Q 003195 399 MLLRLLFP---VVKE--------------EK--S-------AAAKRAFASACASVLKYATPSQAQKLIEETAALHID--- 449 (840)
Q Consensus 399 ~lL~~Ll~---~l~~--------------d~--~-------~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~--- 449 (840)
++++.+.. -+.. |. . ..-|+.....+..++...+...+..+.+.+.+....
T Consensus 396 ~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~ 475 (1204)
T 3a6p_A 396 KYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLD 475 (1204)
T ss_dssp HHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhc
Confidence 88888732 2100 00 0 135677777777777777666555444444333221
Q ss_pred ---------------------Chh--hhHHHHHHHHHHHhhchhhh-hhhHh-hHhHHHHHh---hcCCchHHHHHHHHH
Q 003195 450 ---------------------DKN--SQISCAILLKSYSSVASDVL-SGYHA-VIVPVIFIS---RFEDDKYVSDLFEEL 501 (840)
Q Consensus 450 ---------------------d~~--~r~~~~~~i~ai~~~~~~~f-~~~~~-~llP~l~~~---~~d~d~~vr~~~~~i 501 (840)
++. ...+...+++++.+.....- .++.. .++|.++.. ....++.++.....+
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~ 555 (1204)
T 3a6p_A 476 AGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTN 555 (1204)
T ss_dssp ---------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHH
T ss_pred ccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHH
Confidence 111 12344455555554331111 11221 233433332 134577788777777
Q ss_pred HHHhcCCChhhHHhhHHHHHHHHHhhhcC------------CCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhc
Q 003195 502 WEENTSGDRVTLQLYLGEIVSLICEGIAS------------SSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEV 569 (840)
Q Consensus 502 ~~~~~~~~~~~i~~yl~~Il~~l~~~L~d------------~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l 569 (840)
|+.+..-... -..|++.+++.+...+.+ .+.++|+.|+.++..++..+++.+.||+++|...+...+
T Consensus 556 l~~l~~~~~~-~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l 634 (1204)
T 3a6p_A 556 VSALFPFVTY-RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLL 634 (1204)
T ss_dssp HHHHGGGGGT-CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 7654432211 135788888888777765 234899999999999999999999999999999988877
Q ss_pred CCCC---chhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHH
Q 003195 570 PGRL---WEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSAC 614 (840)
Q Consensus 570 ~~r~---~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~ 614 (840)
.... ...+....+|++.++...++.... ..++..++.-++...
T Consensus 635 ~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~--~~~l~~ll~P~~~~w 680 (1204)
T 3a6p_A 635 SNELLLTQMEKCALMEALVLISNQFKNYERQ--KVFLEELMAPVASIW 680 (1204)
T ss_dssp HSTTTSCHHHHHHHHHHHHHHHGGGCCHHHH--HHHHHHHHHHHHHHH
T ss_pred hCcccccHHHHHHHHHHHHHHhccCCCHHHH--HHHHHHHHHHHHHHH
Confidence 5322 334666777887775443322111 124555555555544
No 74
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.52 E-value=3.3e-06 Score=84.60 Aligned_cols=179 Identities=12% Similarity=0.091 Sum_probs=122.3
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHH-HHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhH
Q 003195 117 LIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLD-LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGK 195 (840)
Q Consensus 117 lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~-~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~ 195 (840)
.+|.|...+.++++.||..+..++..+....+.......+ ..++.|+..+.+.++.+|+.|+.+|+++..+.+. ...
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~ 90 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE--QIQ 90 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH--HHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH--HHH
Confidence 4677777789999999999999999998655444443333 4788899999999999999999999999754321 111
Q ss_pred HH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHH-HhHHHHHHhcccCCchhHHHHHHH
Q 003195 196 HL--RRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSM-DIVLPFLLAEGILSKVDSISKASI 272 (840)
Q Consensus 196 ~L--~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l-~~lLP~Ll~~gL~s~~~evr~~al 272 (840)
.+ ...++.+...+++.++.||..|..++.+++.. . ......++ ...+|.|++ -+.+++.++|..++
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-----~-----~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~ 159 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-----G-----NEQIQAVIDAGALPALVQ-LLSSPNEQILQEAL 159 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-----C-----HHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC-----C-----HHHHHHHHHcCcHHHHHH-HHcCCCHHHHHHHH
Confidence 11 24678888999999999999887776665310 0 00111122 246777764 35567789999999
Q ss_pred HHHHHHHHhhcccccc-chHHHHHHHHHhccCchhHh
Q 003195 273 GVVMKLVKGAGIAIRP-HLSDLVSCMLESLSSLEDQG 308 (840)
Q Consensus 273 ~~L~~la~~~g~~l~p-~lp~Lv~~Ll~~ls~~ep~~ 308 (840)
.+|.+++......... .-...++.|.+.+.+..+.+
T Consensus 160 ~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v 196 (210)
T 4db6_A 160 WALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 196 (210)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHH
T ss_pred HHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHH
Confidence 9999999753221111 11246788888877654443
No 75
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.51 E-value=2.5e-05 Score=74.18 Aligned_cols=213 Identities=11% Similarity=0.101 Sum_probs=152.3
Q ss_pred HHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHH
Q 003195 358 LVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQ 437 (840)
Q Consensus 358 lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~ 437 (840)
++..++..+.+. -|-++..|+.++..+....+... +.++.-|+..+..+..-..-.+.+.++|.+.+. .++.+.
T Consensus 33 ~l~~lI~~LDDD-lwtV~kNAl~vi~~i~~~~~el~----epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-~Pe~v~ 106 (253)
T 2db0_A 33 VLKKLIELLDDD-LWTVVKNAISIIMVIAKTREDLY----EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPELVK 106 (253)
T ss_dssp HHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCGGGH----HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-CHHHHH
T ss_pred HHHHHHHHhccH-HHHHHHhHHHHHHHHHHHhHHHH----HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh-CHHHHH
Confidence 444444555543 56788889999988877666544 455555555654444455557888999999876 456688
Q ss_pred HHHHHHHHhhc-CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhh
Q 003195 438 KLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLY 516 (840)
Q Consensus 438 ~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~y 516 (840)
+.++-+...|- +|+..|.-.+.+++.|++..|......+..+..+ ..+++..=|.......+.+...... |
T Consensus 107 ~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~sm----ltskd~~Dkl~aLnFi~alGen~~~----y 178 (253)
T 2db0_A 107 SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSM----LSSKNREDKLTALNFIEAMGENSFK----Y 178 (253)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH----TSCSSHHHHHHHHHHHHTCCTTTHH----H
T ss_pred hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHH----hcCCChHHHHHHHHHHHHHhccCcc----c
Confidence 89999988885 7899999999999999999988666666555533 2344444444444444444444333 5
Q ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHH
Q 003195 517 LGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSIST 589 (840)
Q Consensus 517 l~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~ 589 (840)
+.+.+|-+...|.|.+.-||.+|..+|+.++... |-+..++-.-.+.+.+++..++..+-++|+-+.-
T Consensus 179 v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n-----pklRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 179 VNPFLPRIINLLHDGDEIVRASAVEALVHLATLN-----DKLRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC-----HHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC-----HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 5555566667889999999999999999999753 3356677777888999999999999999988764
No 76
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.49 E-value=0.00015 Score=82.27 Aligned_cols=404 Identities=9% Similarity=0.014 Sum_probs=205.8
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccc
Q 003195 159 FDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTL 238 (840)
Q Consensus 159 l~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~ 238 (840)
++.++..+.+.++.+|..|+.+|.++..+.+.-...-.-...++.+.+.|.+..+.++..|..++.+++.. .+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-----~~-- 76 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR-----ST-- 76 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-----CH--
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-----CH--
Confidence 45677777788899999999999999865432111112235678888889988899999887777776421 00
Q ss_pred cccchHHhHH-HhHHHHHHhcccC-CchhHHHHHHHHHHHHHHHhhcccccc-chHHHHHHHHHhccCchhHhHHHHHHh
Q 003195 239 TEISDARQSM-DIVLPFLLAEGIL-SKVDSISKASIGVVMKLVKGAGIAIRP-HLSDLVSCMLESLSSLEDQGLNYIELH 315 (840)
Q Consensus 239 ~~~~~~~~~l-~~lLP~Ll~~gL~-s~~~evr~~al~~L~~la~~~g~~l~p-~lp~Lv~~Ll~~ls~~ep~~~~~l~~~ 315 (840)
.....+. ...+|.|++ -|. +++.+++..++.+|.+++.. +..+. .+...+|.|++.+....+
T Consensus 77 ---~~k~~i~~~G~i~~Lv~-lL~~~~~~~~~~~a~~aL~nLa~~--~~~~~~i~~g~i~~Lv~ll~~~~s--------- 141 (457)
T 1xm9_A 77 ---TNKLETRRQNGIREAVS-LLRRTGNAEIQKQLTGLLWNLSST--DELKEELIADALPVLADRVIIPFS--------- 141 (457)
T ss_dssp ---HHHHHHHHTTCHHHHHH-HHTTCCCHHHHHHHHHHHHHHHTS--SSTHHHHHHHHHHHHHHHTTHHHH---------
T ss_pred ---HHHHHHHHcCCHHHHHH-HHhhCCCHHHHHHHHHHHHHHhcC--HHhHHHHHhccHHHHHHHHhcccc---------
Confidence 0011111 234666663 244 56789999999999999975 32333 122567777766631000
Q ss_pred hhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccc
Q 003195 316 AANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKP 395 (840)
Q Consensus 316 a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p 395 (840)
+. +.......| ..........|+.+|..|+.. +.....
T Consensus 142 -~~---~~~~~~~~~-------------------------------------e~~~~~v~~~a~~aL~nLs~~-~~~~~~ 179 (457)
T 1xm9_A 142 -GW---CDGNSNMSR-------------------------------------EVVDPEVFFNATGCLRNLSSA-DAGRQT 179 (457)
T ss_dssp -TC---C----------------------------------------------CCCHHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred -cc---ccCccchhc-------------------------------------ccccHHHHHHHHHHHHHHccC-HHHHHH
Confidence 00 000000000 000011122344555555432 111111
Q ss_pred cH--HHHHHHHHHhHhh-----cCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHHhh-
Q 003195 396 YT--SMLLRLLFPVVKE-----EKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISCAILLKSYSSV- 467 (840)
Q Consensus 396 ~~--~~lL~~Ll~~l~~-----d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~d~~~r~~~~~~i~ai~~~- 467 (840)
.. +..++.|+..+.+ +.+..+.+.+..++..+.-....+ +......+.... ...........+++.....
T Consensus 180 i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 257 (457)
T 1xm9_A 180 MRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAE-VPTRYRQLEYNA-RNAYTEKSSTGCFSNKSDKM 257 (457)
T ss_dssp HTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHH-SCCHHHHHHHTC---------------------
T ss_pred HHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhcc-Ccchhhhccccc-ccccccccccchhhccchhh
Confidence 11 2567788888832 123345555555565553211000 000000000000 0000000000111111000
Q ss_pred --------------chhhhhh-hHhhHhHHHHHh-hcCCchHHHHHHHHHHHHhcCCChh---hH-HhhH--HHHHHHHH
Q 003195 468 --------------ASDVLSG-YHAVIVPVIFIS-RFEDDKYVSDLFEELWEENTSGDRV---TL-QLYL--GEIVSLIC 525 (840)
Q Consensus 468 --------------~~~~f~~-~~~~llP~l~~~-~~d~d~~vr~~~~~i~~~~~~~~~~---~i-~~yl--~~Il~~l~ 525 (840)
.++.... +...++|.+... .+..++++++.....+..++.+... .+ +..+ ...++.+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv 337 (457)
T 1xm9_A 258 MNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIA 337 (457)
T ss_dssp --------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHH
T ss_pred hhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHH
Confidence 0001110 011233433322 2334567777655555455543211 22 2222 34678889
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHHhCcchhhh-HHHHHHHHHHhcCCCCc------hhHHHHHHHHHHHHHhcccccccC
Q 003195 526 EGIASSSWSSKRKSAKAICKLGEILGESLSNY-HHVLLESIMKEVPGRLW------EGKDALLYAIGSISTSCHKDISAE 598 (840)
Q Consensus 526 ~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~-l~~llp~L~~~l~~r~~------~~Ke~vl~aL~~l~~~~~~~~~~~ 598 (840)
+.|.+.+.++|+.|+.+|+.++.. ...... -...+|.|++-|..... +....++.++..++.+..+....
T Consensus 338 ~LL~~~~~~v~~~A~~aL~nls~~--~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~- 414 (457)
T 1xm9_A 338 RLLQSGNSDVVRSGASLLSNMSRH--PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQ- 414 (457)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHH-
T ss_pred HHHhCCCHhHHHHHHHHHHHHhcC--HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHH-
Confidence 999999999999999999999863 333222 35678889998876532 34556677777776543321110
Q ss_pred CCCchHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHH
Q 003195 599 DPTTPFAIVDMVSSACRKK-IKKYREAAFSCLEQVI 633 (840)
Q Consensus 599 ~~~~~~~i~~~l~~~~~~~-~~~~R~~Al~~L~~l~ 633 (840)
-.-...++.+.+.++.. +.++++.|...|..+.
T Consensus 415 --i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 415 --YFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp --HCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred --HHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 00134566677777666 8899999999887654
No 77
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.44 E-value=0.0017 Score=76.45 Aligned_cols=229 Identities=10% Similarity=0.043 Sum_probs=142.1
Q ss_pred HHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHH-----HHHHHHHHHhhcCC-h---hhhHHHHHHHHHHHhhc-h
Q 003195 400 LLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQA-----QKLIEETAALHIDD-K---NSQISCAILLKSYSSVA-S 469 (840)
Q Consensus 400 lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~-----~~li~~l~~~~~~d-~---~~r~~~~~~i~ai~~~~-~ 469 (840)
.++.|...+ ...++.+|+.++.+++.+... .+.. +..++.+++.+... + ..|..++.++..+.-.. +
T Consensus 458 vIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d--~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np 534 (778)
T 3opb_A 458 LISFLKREM-HNLSPNCKQQVVRIIYNITRS--KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP 534 (778)
T ss_dssp HHHHHHHHG-GGSCHHHHHHHHHHHHHHHTS--GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH
T ss_pred CHHHHHHHH-cCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH
Confidence 566777776 567899999999999999744 3222 23466777777532 2 25778888888776432 2
Q ss_pred h-hhhhh--HhhHhHHHHHhhc-CCch-----------H-H-HHHHHHHHHHhcCCCh---hhHH-hhHH--HHHHHHHh
Q 003195 470 D-VLSGY--HAVIVPVIFISRF-EDDK-----------Y-V-SDLFEELWEENTSGDR---VTLQ-LYLG--EIVSLICE 526 (840)
Q Consensus 470 ~-~f~~~--~~~llP~l~~~~~-d~d~-----------~-v-r~~~~~i~~~~~~~~~---~~i~-~yl~--~Il~~l~~ 526 (840)
. .|..+ .. .+|.++.-.. ++.. . + +......+..+..... ..++ ..+. ..++.+..
T Consensus 535 ~~~f~~~~~~~-aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~ 613 (778)
T 3opb_A 535 GLIFKKYSALN-AIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIEN 613 (778)
T ss_dssp HHHSSSSCSTT-HHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHcCCCcccc-chHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHH
Confidence 2 23221 23 4444443333 1110 0 1 1112233333333321 2232 2343 37888888
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhCcch-hhhH----HH---HHHHHHHhcCCCCchhHHHHHHHHHHHHHhccc---cc
Q 003195 527 GIASSSWSSKRKSAKAICKLGEILGESL-SNYH----HV---LLESIMKEVPGRLWEGKDALLYAIGSISTSCHK---DI 595 (840)
Q Consensus 527 ~L~d~s~~vR~~Aa~~L~~La~~~~~~l-~~~l----~~---llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~---~~ 595 (840)
.+.+.+..+|++|+.+|+.|+..- +.+ ..+. +. =++.|+.-+.....+.|..+..||+.+...... .+
T Consensus 614 LL~s~n~~VrrAA~elI~NL~~~~-e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~l 692 (778)
T 3opb_A 614 LMLDENVPLQRSTLELISNMMSHP-LTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKEL 692 (778)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHTSG-GGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHhCCc-HHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 999999999999999999999633 222 1221 11 267888888777889999999888888654332 11
Q ss_pred ccCCCCchHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHcCC
Q 003195 596 SAEDPTTPFAIVDMVSSACRK--KIKKYREAAFSCLEQVIKAFRD 638 (840)
Q Consensus 596 ~~~~~~~~~~i~~~l~~~~~~--~~~~~R~~Al~~L~~l~~~~~~ 638 (840)
.. .+..+..++..+.+ .+.+.|..++.++..++...++
T Consensus 693 l~-----~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~ 732 (778)
T 3opb_A 693 LT-----KKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPD 732 (778)
T ss_dssp TT-----CHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCS
T ss_pred HH-----ccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhcc
Confidence 11 13566667777777 7999999999999999975543
No 78
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.38 E-value=3.2e-05 Score=82.14 Aligned_cols=180 Identities=11% Similarity=0.069 Sum_probs=118.8
Q ss_pred hhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHh-hcCCCCHhHHHHHHHHHHHhccCChHHHHHHHH-HHHHHHHHhhC
Q 003195 90 NSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVR-FQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLD-LIFDDLLIQSG 167 (840)
Q Consensus 90 ~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~-~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~-~Il~~Ll~~l~ 167 (840)
..|..|+..|..+++.......=.-...+|.|+. ++.+|++.||..+..++..++.+.+...+..++ ..++.|+..+.
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 3566777777777764321110011245677777 899999999999999999999876543333332 35666666665
Q ss_pred -CCChhHHHHHHHHHHHHHccCCchhhhHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHH
Q 003195 168 -SRLWRSREASCLSLADIIQGRKFDQVGKHL-RRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDAR 245 (840)
Q Consensus 168 -~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L-~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~ 245 (840)
+++..+|+.|++||++++.+.+. ....+. ...++.+.+++.+....||..|..++..+..- ++ ....
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~~-~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-----~~-----~~~~ 203 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQEA-GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-----HP-----EHKG 203 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CG-----GGHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-----Ch-----HHHH
Confidence 34678999999999999876532 122222 25788888889988899998876666655321 11 0111
Q ss_pred hHH-HhHHHHHHhcccCCchhHHHHHHHHHHHHHHHh
Q 003195 246 QSM-DIVLPFLLAEGILSKVDSISKASIGVVMKLVKG 281 (840)
Q Consensus 246 ~~l-~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~ 281 (840)
.++ ..++|.|.. -|.+++.++|..++.+|+++++.
T Consensus 204 ~vv~~g~i~~Lv~-LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 204 TLCSMGMVQQLVA-LVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHTTHHHHHHH-HHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHH-HHcCCChhHHHHHHHHHHHHHhC
Confidence 121 235666653 24556778999999999999976
No 79
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.27 E-value=0.00079 Score=77.79 Aligned_cols=353 Identities=13% Similarity=0.086 Sum_probs=195.0
Q ss_pred HHHHHHhcccCCchhHHHHHHHHHHHHHHHhhc---cccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhH
Q 003195 251 VLPFLLAEGILSKVDSISKASIGVVMKLVKGAG---IAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLE 327 (840)
Q Consensus 251 lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g---~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d 327 (840)
-+|.|++ .|.+++.+++..|..+|..++.... ..+.. ...||.|++.|.+..+.+.....+...+.....+ +
T Consensus 49 ~i~~LV~-~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~--~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~--~ 123 (584)
T 3l6x_A 49 ELPEVIA-MLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRK--LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRD--Q 123 (584)
T ss_dssp CHHHHHH-HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH--TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSC--H
T ss_pred cHHHHHH-HHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHH--cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCC--H
Confidence 3666664 3667778999999999999986322 11211 2458999999987665554333322222111000 0
Q ss_pred HHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccc-cHHHHHHHHHH
Q 003195 328 NLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKP-YTSMLLRLLFP 406 (840)
Q Consensus 328 ~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p-~~~~lL~~Ll~ 406 (840)
+.|..++ -...+|.|++++++.....++..++.+|..|+..- ..+. ....-++.|+.
T Consensus 124 ~nk~~I~--------------------~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~--~~k~~I~~~alp~Lv~ 181 (584)
T 3l6x_A 124 DNKIAIK--------------------NCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD--SIKMEIVDHALHALTD 181 (584)
T ss_dssp HHHHHHH--------------------HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG--GGHHHHHHHTHHHHHH
T ss_pred HHHHHHH--------------------HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc--hhhHHHHhccHHHHHH
Confidence 0010000 01356888888886434456777888888876521 1110 11222444444
Q ss_pred hHh-----------------hcCcHHHHHHHHHHHHHhhhcCCH--HHHH---HHHHHHHHhhc-------CChhhhHHH
Q 003195 407 VVK-----------------EEKSAAAKRAFASACASVLKYATP--SQAQ---KLIEETAALHI-------DDKNSQISC 457 (840)
Q Consensus 407 ~l~-----------------~d~~~~Vr~~a~~Alg~l~~~~~~--~~~~---~li~~l~~~~~-------~d~~~r~~~ 457 (840)
.+. ...+..|++.++.++..|.....+ ..+. .+++.|+..+. .+.....-+
T Consensus 182 LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~ena 261 (584)
T 3l6x_A 182 EVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENC 261 (584)
T ss_dssp HTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHH
T ss_pred HHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHH
Confidence 321 112468999999999988754322 1111 22334443331 123334445
Q ss_pred HHHHHHHHhhchhh------h-------------------hh-hHhhHhHHHHHhh-cCCchHHHHHHHHHHHHhcCCC-
Q 003195 458 AILLKSYSSVASDV------L-------------------SG-YHAVIVPVIFISR-FEDDKYVSDLFEELWEENTSGD- 509 (840)
Q Consensus 458 ~~~i~ai~~~~~~~------f-------------------~~-~~~~llP~l~~~~-~d~d~~vr~~~~~i~~~~~~~~- 509 (840)
.-++..++...... | .. +....+|.++... ....+++++....++..++.+.
T Consensus 262 v~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~ 341 (584)
T 3l6x_A 262 VCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRW 341 (584)
T ss_dssp HHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCS
T ss_pred HHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc
Confidence 55555555432100 1 00 0112334333222 3346778777666665665432
Q ss_pred h--hhHHhhH--HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCC--------CchhH
Q 003195 510 R--VTLQLYL--GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGR--------LWEGK 577 (840)
Q Consensus 510 ~--~~i~~yl--~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r--------~~~~K 577 (840)
. ..++..+ ...++.+.+.|.+++.++++.|+.+|+.|+...... ...-...+|.|++-|... ..+..
T Consensus 342 ~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~ 420 (584)
T 3l6x_A 342 TYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTV 420 (584)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHH
T ss_pred cccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH-HHHHhCCHHHHHHHhcCCcccccccchHHHH
Confidence 1 1222233 356888999999999999999999999999743221 112356889999988653 23456
Q ss_pred HHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHH
Q 003195 578 DALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKK--IKKYREAAFSCLEQVIK 634 (840)
Q Consensus 578 e~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~R~~Al~~L~~l~~ 634 (840)
..++.+|..++.+....... -.-...++.++..++.+ +.+.++.|..+|..+..
T Consensus 421 ~~a~~tL~NL~a~~~~~~~~---I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 421 ISILNTINEVIAENLEAAKK---LRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHHHHHHHTTCHHHHHH---HHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHH---HHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 67777777777543321100 00123456677777654 78999999999988873
No 80
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.27 E-value=1.2e-05 Score=84.71 Aligned_cols=184 Identities=7% Similarity=-0.020 Sum_probs=126.0
Q ss_pred chhhhhhHHhHHHHHHHHhhh-----hhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCC------hHHHHHHHH
Q 003195 88 SLNSKRGAAFGFSKIAKQAGD-----ALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADP------KRTIDEHLD 156 (840)
Q Consensus 88 ~w~sr~gA~~~l~~I~~~~~~-----~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~------~~~i~~~~~ 156 (840)
.|..|..|.-.+..+++.... ...+.+..+.+.+-.+..|.|..|...+..++..++... ......+..
T Consensus 22 ~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (278)
T 4ffb_C 22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLIS 101 (278)
T ss_dssp SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHH
Confidence 599999999888887765422 222235566666767789999999999999999887532 223455678
Q ss_pred HHHHHHHHh-hCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhh
Q 003195 157 LIFDDLLIQ-SGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCD 235 (840)
Q Consensus 157 ~Il~~Ll~~-l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~ 235 (840)
.+++.|+.. ++|...++|+.+..++..+++.... ...++..+...++...+.||.++...+..+.. ...
T Consensus 102 ~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~------~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~----~fg 171 (278)
T 4ffb_C 102 TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS------ITQSVELVIPFFEKKLPKLIAAAANCVYELMA----AFG 171 (278)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS------SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHH----HHT
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH----HhC
Confidence 899999986 7898899999999998888764331 12344455566888899999987666655422 211
Q ss_pred ccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccc
Q 003195 236 VTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIA 285 (840)
Q Consensus 236 ~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~ 285 (840)
... ......++.+++.+. +.+.+++.+||..|..+++.+.+..|+.
T Consensus 172 ~~~---~~~k~~l~~i~~~l~-k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 172 LTN---VNVQTFLPELLKHVP-QLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp TTT---CCHHHHHHHHGGGHH-HHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred CCc---CCchhHHHHHHHHHH-HHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 111 113345566666654 3567788999999999999999888864
No 81
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.26 E-value=7e-05 Score=77.46 Aligned_cols=189 Identities=15% Similarity=0.183 Sum_probs=123.4
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 003195 161 DLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTE 240 (840)
Q Consensus 161 ~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~ 240 (840)
++...+-+++|+.|.+++..|.+.++..+ +.+...+.-++.-+.--+.|.+..|-..+...+..+...+.+. ..
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~-~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~---~y-- 123 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSP-RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDT---ET-- 123 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCH-HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT---TC--
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhCh-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc---cc--
Confidence 35667778899999999988888776532 2333333333332211234777777766666666664443221 00
Q ss_pred cchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcc
Q 003195 241 ISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAG 320 (840)
Q Consensus 241 ~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~ 320 (840)
.....-...++|.|+++ +.+..+.+|..+-+++..+.+.+++
T Consensus 124 -~~~~~ea~~~lP~LveK-lGd~k~~vR~~~r~il~~l~~v~~~------------------------------------ 165 (266)
T 2of3_A 124 -PMSQEEVSAFVPYLLLK-TGEAKDNMRTSVRDIVNVLSDVVGP------------------------------------ 165 (266)
T ss_dssp -CCCHHHHHHHHHHHHHG-GGCSSHHHHHHHHHHHHHHHHHHCH------------------------------------
T ss_pred -cchHHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHHHCCH------------------------------------
Confidence 01112245678888875 5656677887777766555543222
Q ss_pred cchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHH
Q 003195 321 IQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSML 400 (840)
Q Consensus 321 ~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~l 400 (840)
..+.+.+.+++++. .+.+|.+|++.+..+..++|.. | .+.
T Consensus 166 -----------------------------------~~v~~~l~~g~ksK-N~R~R~e~l~~l~~li~~~G~~--~--~~~ 205 (266)
T 2of3_A 166 -----------------------------------LKMTPMLLDALKSK-NARQRSECLLVIEYYITNAGIS--P--LKS 205 (266)
T ss_dssp -----------------------------------HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHCSG--G--GGG
T ss_pred -----------------------------------HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCC--c--ccc
Confidence 12334445555544 5778999999999999999976 2 345
Q ss_pred H---HHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHH
Q 003195 401 L---RLLFPVVKEEKSAAAKRAFASACASVLKYATPS 434 (840)
Q Consensus 401 L---~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~ 434 (840)
+ +.+.+.+ +|++..||.+|..++..+.+..++.
T Consensus 206 l~~~~~ia~ll-~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 206 LSVEKTVAPFV-GDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp GCHHHHHGGGG-GCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred ccchHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 6 8888888 8999999999999998888777665
No 82
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.25 E-value=5.9e-05 Score=90.55 Aligned_cols=294 Identities=13% Similarity=0.100 Sum_probs=170.7
Q ss_pred hhhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCC--------HhHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 003195 89 LNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPD--------KNVQDAMAHIWKSLVADPKRTIDEHLDLIFD 160 (840)
Q Consensus 89 w~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~--------~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~ 160 (840)
-..|-||++|+|-|..+.++. ++..|..+..+++ +.||.++.--++...-.+. -+ .+++
T Consensus 409 ~~ik~GAllaLGli~ag~~~~-------~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~--~e----ev~e 475 (963)
T 4ady_A 409 RFIKGGSLYGLGLIYAGFGRD-------TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA--NI----EVYE 475 (963)
T ss_dssp HHHHHHHHHHHHHHTTTTTHH-------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC--CH----HHHH
T ss_pred HHHHHHHHHHHHHhcCCCcHH-------HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC--CH----HHHH
Confidence 456789999999999888642 2333333345554 7899887777766543321 11 2333
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 003195 161 DLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTE 240 (840)
Q Consensus 161 ~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~ 240 (840)
.|...+.+.+..+|++++.|++-+.-|...+.. +..|+..+ ++|.++.||+.+...+. .+..+
T Consensus 476 ~L~~~L~dd~~~~~~~AalALGli~vGTgn~~a---i~~LL~~~---~e~~~e~vrR~aalgLG---ll~~g-------- 538 (963)
T 4ady_A 476 ALKEVLYNDSATSGEAAALGMGLCMLGTGKPEA---IHDMFTYS---QETQHGNITRGLAVGLA---LINYG-------- 538 (963)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHH---HHHHHHHH---HHCSCHHHHHHHHHHHH---HHTTT--------
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHH---HHHHHHHH---hccCcHHHHHHHHHHHH---hhhCC--------
Confidence 344455555667899999999988766553332 33444443 46778889887644433 22111
Q ss_pred cchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcc
Q 003195 241 ISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAG 320 (840)
Q Consensus 241 ~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~ 320 (840)
.++..+.++..|. .+.++-+|..++.+++--.-..|. +..+..|+..+.+..
T Consensus 539 ---~~e~~~~li~~L~----~~~dp~vRygaa~alglAyaGTGn------~~aIq~LL~~~~~d~--------------- 590 (963)
T 4ady_A 539 ---RQELADDLITKML----ASDESLLRYGGAFTIALAYAGTGN------NSAVKRLLHVAVSDS--------------- 590 (963)
T ss_dssp ---CGGGGHHHHHHHH----HCSCHHHHHHHHHHHHHHTTTSCC------HHHHHHHHHHHHHCS---------------
T ss_pred ---ChHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHhccCC---------------
Confidence 1123344444442 235577887777666543333344 345666665543211
Q ss_pred cchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHH
Q 003195 321 IQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSML 400 (840)
Q Consensus 321 ~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~l 400 (840)
-+.+|..++ -+++.+.-. + ++.+|++++.+....+..+|.+++-.++.+....| ..++
T Consensus 591 -----~d~VRraAV------iaLGlI~~g-~----~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~------~~~a 648 (963)
T 4ady_A 591 -----NDDVRRAAV------IALGFVLLR-D----YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG------LQSA 648 (963)
T ss_dssp -----CHHHHHHHH------HHHHHHTSS-S----CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC------CHHH
T ss_pred -----cHHHHHHHH------HHHHhhccC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC------cHHH
Confidence 122332221 123322111 1 13467777666555577889999888887642222 3567
Q ss_pred HHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHH---HHHHHHHHHHHhhc---CChhhhHHHHHHHHH
Q 003195 401 LRLLFPVVKEEKSAAAKRAFASACASVLKYATPS---QAQKLIEETAALHI---DDKNSQISCAILLKS 463 (840)
Q Consensus 401 L~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~---~~~~li~~l~~~~~---~d~~~r~~~~~~i~a 463 (840)
+..|.+.. .|.+..||+.++.|+|.+....++. .+..+...+...+. +|+..|-.+..+.|-
T Consensus 649 id~L~~L~-~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGl 716 (963)
T 4ady_A 649 IDVLDPLT-KDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGI 716 (963)
T ss_dssp HHHHHHHH-TCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHc-cCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 77777776 7999999999999999998665544 56666666666653 245555555444443
No 83
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.24 E-value=0.00033 Score=78.93 Aligned_cols=152 Identities=13% Similarity=-0.036 Sum_probs=93.4
Q ss_pred HHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHH--HH---HHHHHHHHHhhcC-Ch----hhhHHHHHHHHHHHhh---
Q 003195 401 LRLLFPVVKEEKSAAAKRAFASACASVLKYATPS--QA---QKLIEETAALHID-DK----NSQISCAILLKSYSSV--- 467 (840)
Q Consensus 401 L~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~--~~---~~li~~l~~~~~~-d~----~~r~~~~~~i~ai~~~--- 467 (840)
++.|+..|....+..+++.++.+++.+...+.+. .+ ...++.+.+++.. ++ +.+..++.++..++.+
T Consensus 288 I~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~ 367 (458)
T 3nmz_A 288 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 367 (458)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC
Confidence 4444554324456788888888998887644221 12 2346677777642 22 3566677788888763
Q ss_pred chhhhhhhH-hhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHHhhhcCCCHHHHHHHHHHHHH
Q 003195 468 ASDVLSGYH-AVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYL-GEIVSLICEGIASSSWSSKRKSAKAICK 545 (840)
Q Consensus 468 ~~~~f~~~~-~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl-~~Il~~l~~~L~d~s~~vR~~Aa~~L~~ 545 (840)
.++.-.... ...+|.+.......+.+++.....+...+..+.+....... .-.++.+.+.+.+.+.++|+.|+.+|..
T Consensus 368 ~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~n 447 (458)
T 3nmz_A 368 NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 447 (458)
T ss_dssp CHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 222211211 22566666656666677776655554455544333322222 3468889999999999999999999999
Q ss_pred HHHHhCc
Q 003195 546 LGEILGE 552 (840)
Q Consensus 546 La~~~~~ 552 (840)
|+...+.
T Consensus 448 L~~~~p~ 454 (458)
T 3nmz_A 448 LMANRPA 454 (458)
T ss_dssp HHTCCSC
T ss_pred HHcCCHh
Confidence 9975443
No 84
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.23 E-value=0.011 Score=69.76 Aligned_cols=418 Identities=11% Similarity=0.056 Sum_probs=218.3
Q ss_pred CCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHH
Q 003195 126 YDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAF 205 (840)
Q Consensus 126 ~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~ 205 (840)
.++...+..+....+++...|. ...+-..+..++.|...+.+. .+|..|..+|.-+-....... .-..++.+.+.
T Consensus 266 ~~~~~~~~~a~L~lLsaACi~~-~cR~~I~~~~~~~L~~~l~~~--~ir~lAavvL~KL~~~~~~~~--~si~~La~~~~ 340 (778)
T 3opb_A 266 EEQDLQFTKELLRLLSSACIDE-TMRTYITENYLQLLERSLNVE--DVQIYSALVLVKTWSFTKLTC--INLKQLSEIFI 340 (778)
T ss_dssp SSCCHHHHHHHHHHHHHHCCSH-HHHHHHHHHHHHHHHHHTTSG--GGHHHHHHHHHHHTGGGTCTT--CCHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhCCc-HHHHHHHHhHHHHHHHHhccH--HHHHHHHHHHHHHhcCCCCCc--CcHHHHHHHHH
Confidence 3566778888888888877663 222222344444455555553 566666666666544322211 22345666677
Q ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhhhcccc-ccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhcc
Q 003195 206 RAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLT-EISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGI 284 (840)
Q Consensus 206 ~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~-~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~ 284 (840)
+.+.+.....|+-|.+.+..++. ++... .-...+..+..++..+- . .....+.-.++.++.++......
T Consensus 341 ~~L~~~~~~~~~~AvEgLaYLSl------~~~VKe~L~~d~~~L~~Lv~llk--~--~~d~s~~Ygal~IL~NLt~~~~~ 410 (778)
T 3opb_A 341 NAISRRIVPKVEMSVEALAYLSL------KASVKIMIRSNESFTEILLTMIK--S--QKMTHCLYGLLVIMANLSTLPEE 410 (778)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHTT------SSHHHHHHHHCHHHHHHHHHHHT--T--TCCTTHHHHHHHHHHHTTCCCCC
T ss_pred HHHhcCCccHHHHHHHHHHHHhC------CHHHHHHHHhCHHHHHHHHHHHh--C--CCCchHHHHHHHHHHHhcCCCcc
Confidence 76765444446666555554421 11000 00001223444444331 1 13345666677777777764322
Q ss_pred ccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHH-HHHhhcChhhHhhHHHHHH
Q 003195 285 AIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLD-LCINVVDTESLDQLVPHLA 363 (840)
Q Consensus 285 ~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~-~~~~~~d~~~l~~lvp~L~ 363 (840)
+.+-.++ +..|.. |...+....+...+.+++. .+..+ .+...++ ...+|.|.
T Consensus 411 -~~~e~~~-l~~Lk~-----------~A~~~~p~~~~~d~~~~~~----------~~v~~~~~~~l~e----aGvIp~Lv 463 (778)
T 3opb_A 411 -XXXXXXX-XXXXXX-----------XXXXXXPAADKVGAEKAAK----------EDILLFNEKYILR----TELISFLK 463 (778)
T ss_dssp -CCCCCC------------------------------CCTHHHHH----------HHHHHHHHHHTTT----TTHHHHHH
T ss_pred -cchhhhh-hhhhhh-----------hccccCcccCcccccccch----------HHHHHHHHHHHHH----CcCHHHHH
Confidence 1111110 011111 1100000000000001100 00011 1111112 13678888
Q ss_pred HHHhccCCCchHhHHHHHHHHHHHHhccCcccc-HHHHHHHHHHhHhhcCcHH---HHHHHHHHHHHhhhcCCHHHH---
Q 003195 364 RLVRSGIGLNTRVGVASFISLLVQKIGMDIKPY-TSMLLRLLFPVVKEEKSAA---AKRAFASACASVLKYATPSQA--- 436 (840)
Q Consensus 364 ~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~-~~~lL~~Ll~~l~~d~~~~---Vr~~a~~Alg~l~~~~~~~~~--- 436 (840)
..+++. ...+|..++++|..|+..-. .-... -...++.|+..+ ...... +|..++.|+.++....++..+
T Consensus 464 ~Ll~S~-s~~~re~A~~aL~nLS~d~~-~R~~lvqqGal~~LL~lL-~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~ 540 (778)
T 3opb_A 464 REMHNL-SPNCKQQVVRIIYNITRSKN-FIPQLAQQGAVKIILEYL-ANKQDIGEPIRILGCRALTRMLIFTNPGLIFKK 540 (778)
T ss_dssp HHGGGS-CHHHHHHHHHHHHHHHTSGG-GHHHHHHTTHHHHHHHHT-TCC---CCHHHHHHHHHHHHHHHTSCHHHHSSS
T ss_pred HHHcCC-CHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHH-hcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCC
Confidence 877765 56778899999999864311 11111 124567778777 333333 899999999999876665543
Q ss_pred ---HHHHHHHHHhhcCChh---------------hhHHHHHHHHHHHhhc---hhhh-hhhHh--hHhHHHHHhhcCCch
Q 003195 437 ---QKLIEETAALHIDDKN---------------SQISCAILLKSYSSVA---SDVL-SGYHA--VIVPVIFISRFEDDK 492 (840)
Q Consensus 437 ---~~li~~l~~~~~~d~~---------------~r~~~~~~i~ai~~~~---~~~f-~~~~~--~llP~l~~~~~d~d~ 492 (840)
..-+++|.+++..++. .+..+..++..++... ++.. ..... ..+|.+...+.++++
T Consensus 541 ~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~ 620 (778)
T 3opb_A 541 YSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENV 620 (778)
T ss_dssp SCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSH
T ss_pred CccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCH
Confidence 1457888888752111 1446777878887764 1222 22333 377887777788888
Q ss_pred HHHHHHHHHHHHhcCCChhhH-HhhH----HH---HHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhh--HHHHH
Q 003195 493 YVSDLFEELWEENTSGDRVTL-QLYL----GE---IVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNY--HHVLL 562 (840)
Q Consensus 493 ~vr~~~~~i~~~~~~~~~~~i-~~yl----~~---Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~--l~~ll 562 (840)
.+|..+.+++..+.... ..+ ..+. +. =++.+...+.+.+.++|++|+.+|+.+....+...... .+..+
T Consensus 621 ~VrrAA~elI~NL~~~~-e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi 699 (778)
T 3opb_A 621 PLQRSTLELISNMMSHP-LTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELI 699 (778)
T ss_dssp HHHHHHHHHHHHHHTSG-GGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccH
Confidence 89988777777766533 222 1221 11 26778888899999999999999999865432211111 12344
Q ss_pred HHHHHhcCC--CCchhHHHHHHHHHHHHH
Q 003195 563 ESIMKEVPG--RLWEGKDALLYAIGSIST 589 (840)
Q Consensus 563 p~L~~~l~~--r~~~~Ke~vl~aL~~l~~ 589 (840)
+.+.+-|.+ ...+.+...+.++..++.
T Consensus 700 ~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 700 ENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 444444444 456677777888887775
No 85
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.21 E-value=0.00028 Score=79.52 Aligned_cols=216 Identities=8% Similarity=-0.023 Sum_probs=138.6
Q ss_pred hHhHHHHHHHHHHHHhccCcccc---HHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHH---HH--HHHHHHHH
Q 003195 374 TRVGVASFISLLVQKIGMDIKPY---TSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQ---AQ--KLIEETAA 445 (840)
Q Consensus 374 ~r~~a~~~l~~L~~~~~~~~~p~---~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~---~~--~li~~l~~ 445 (840)
.+..|+.+|..|+..... -+.. .+..++.|+..| ...+..|+..++.+++.+....+++. +. .-++.+++
T Consensus 216 l~~~Aa~aL~nLa~~~~~-~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~ 293 (458)
T 3nmz_A 216 LRRYAGMALTNLTFGDVA-NKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 293 (458)
T ss_dssp HHHHHHHHHHHHHTTCHH-HHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcc-cHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHH
Confidence 466788888888743211 1111 245689999998 57789999999999999975433332 22 34678888
Q ss_pred hhc--CChhhhHHHHHHHHHHHhhchhhhhhhH--hhHhHHHHHhhcCCch----HHHHHHHHHHHHhcC---CChhhHH
Q 003195 446 LHI--DDKNSQISCAILLKSYSSVASDVLSGYH--AVIVPVIFISRFEDDK----YVSDLFEELWEENTS---GDRVTLQ 514 (840)
Q Consensus 446 ~~~--~d~~~r~~~~~~i~ai~~~~~~~f~~~~--~~llP~l~~~~~d~d~----~vr~~~~~i~~~~~~---~~~~~i~ 514 (840)
.+. .++..+..++.++..++....+.-.... ...+|.+........+ +++.....++..+.. +.+....
T Consensus 294 lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~ 373 (458)
T 3nmz_A 294 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ 373 (458)
T ss_dssp HHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 653 4567788888888888874433211221 2356655544333222 355544444433332 3322222
Q ss_pred hhH-HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhh-HHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhc
Q 003195 515 LYL-GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNY-HHVLLESIMKEVPGRLWEGKDALLYAIGSISTSC 591 (840)
Q Consensus 515 ~yl-~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~-l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~ 591 (840)
... ...++.+.+.|.+.+.++++.|+.+|+.++....+..... -...+|.|++-+...+...|+.+..||..|+...
T Consensus 374 ~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 374 ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 222 2467888889999999999999999999984222221111 1457899999998888889999999999998754
No 86
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.16 E-value=0.0007 Score=64.42 Aligned_cols=217 Identities=12% Similarity=0.095 Sum_probs=157.7
Q ss_pred ccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHHhhchhhh
Q 003195 395 PYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDK--NSQISCAILLKSYSSVASDVL 472 (840)
Q Consensus 395 p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~d~--~~r~~~~~~i~ai~~~~~~~f 472 (840)
.|-..+++.++..| +|.-..|++.+..-+..+.+..+ +....++.++.-++..++ ...+.++.++|.+++..|+..
T Consensus 28 ~~d~~~l~~lI~~L-DDDlwtV~kNAl~vi~~i~~~~~-el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v 105 (253)
T 2db0_A 28 KYDESVLKKLIELL-DDDLWTVVKNAISIIMVIAKTRE-DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV 105 (253)
T ss_dssp HHCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HhhHHHHHHHHHHh-ccHHHHHHHhHHHHHHHHHHHhH-HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence 36778899999999 77888999999998888876554 445666666666654333 345678889999999888744
Q ss_pred hhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCc
Q 003195 473 SGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE 552 (840)
Q Consensus 473 ~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~ 552 (840)
..++|.+|..-.-.++.+|-...-+++++...-+. .++.++.-+...+.|++..=|-.|..+|+.+..
T Consensus 106 ----~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe---- 173 (253)
T 2db0_A 106 ----KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNREDKLTALNFIEAMGE---- 173 (253)
T ss_dssp ----HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT----
T ss_pred ----HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc----
Confidence 44788887654445777887766777776554333 344555556667788887778877777776544
Q ss_pred chhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 003195 553 SLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQV 632 (840)
Q Consensus 553 ~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l 632 (840)
.=..|..+.+|-|..-|.+++.-+|..+.++|+.++... |-+..++...+.++++.+..+....-..|+++
T Consensus 174 n~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n---------pklRkii~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 174 NSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLN---------DKLRKVVIKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp TTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC---------HHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred cCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC---------HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 323355666777888889999999999999999998643 23567777778899899988888887888877
Q ss_pred HH
Q 003195 633 IK 634 (840)
Q Consensus 633 ~~ 634 (840)
.-
T Consensus 245 ~l 246 (253)
T 2db0_A 245 LL 246 (253)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 87
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.13 E-value=0.00012 Score=75.72 Aligned_cols=181 Identities=12% Similarity=0.081 Sum_probs=128.5
Q ss_pred CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCC---hhhHHhh-HHHHHHHH
Q 003195 449 DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGD---RVTLQLY-LGEIVSLI 524 (840)
Q Consensus 449 ~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~---~~~i~~y-l~~Il~~l 524 (840)
.|...|..+...+.......++.....++.+++.+-...+|.+..|-....++...+.... +..+..| ...++|.+
T Consensus 58 ~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~L 137 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYL 137 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 4556666666666555554555444555555664443456766665544334443332211 1123344 47789999
Q ss_pred HhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchH
Q 003195 525 CEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPF 604 (840)
Q Consensus 525 ~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~ 604 (840)
.+-++|+...+|..+-..+..+...++. ..+++.+.++++.++|-.|++.+..++.++...|... .
T Consensus 138 veKlGd~k~~vR~~~r~il~~l~~v~~~------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--------~ 203 (266)
T 2of3_A 138 LLKTGEAKDNMRTSVRDIVNVLSDVVGP------LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP--------L 203 (266)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHHHHHCH------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--------G
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--------c
Confidence 9999999999999999999888876543 4588899999999999999999999999999877431 2
Q ss_pred HHH---HHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCcchHHh
Q 003195 605 AIV---DMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNI 644 (840)
Q Consensus 605 ~i~---~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~~l~~~ 644 (840)
..+ +.+.+.+.+++..+|.+|+.|+.++....++ .+...
T Consensus 204 ~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd-~v~k~ 245 (266)
T 2of3_A 204 KSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD-QMWKA 245 (266)
T ss_dssp GGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH-HHHHH
Confidence 345 7888899999999999999999999988755 44443
No 88
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.09 E-value=3.5e-05 Score=85.20 Aligned_cols=143 Identities=14% Similarity=0.154 Sum_probs=95.0
Q ss_pred hcCCc-hHHHHHHHHhccccchhhhhhHHhHHHHHHHHhh----hh--hch-hhhhHHHHHH-----hhcCC-CCHhHHH
Q 003195 69 EMGQP-DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAG----DA--LKP-HLRLLIPKLV-----RFQYD-PDKNVQD 134 (840)
Q Consensus 69 ~~g~p-~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~----~~--l~~-~l~~lvP~L~-----~~~~D-p~~~VR~ 134 (840)
...|| + ++.++--.--++.|..|.|||+||-.|+...+ .. ... ..-+++=.|. -|-.| .-.-||+
T Consensus 168 ~~eWPfq-fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRE 246 (800)
T 3oc3_A 168 PIENVLD-FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRD 246 (800)
T ss_dssp CCCSGGG-TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHH
T ss_pred CCCCHHH-HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHH
Confidence 34666 5 33333222123459999999999999987543 21 111 1122222222 23335 3677999
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHH
Q 003195 135 AMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKET 214 (840)
Q Consensus 135 a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~ 214 (840)
++....+++ ...+.. -.++..++..+..+.|.||.++..++.-+ .+-+.. ++.+++.++..|.|..+.
T Consensus 247 TaAQtLGaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~-Ld~Vv~aVL~GL~D~DDD 314 (800)
T 3oc3_A 247 AAAYLLSRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVED-KDGLCRKLVSLLSSPDED 314 (800)
T ss_dssp HHHHHHHHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCC-HHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHH-HHHHHHHHHhhcCCcccH
Confidence 999999998 543322 24566677777888999999999999877 222223 889999999999999999
Q ss_pred HHHHHHHHHH
Q 003195 215 VRTAGDKLCR 224 (840)
Q Consensus 215 VR~aA~~~~~ 224 (840)
||..|+.++.
T Consensus 315 VRAVAAetLi 324 (800)
T 3oc3_A 315 IKLLSAELLC 324 (800)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 9998865553
No 89
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.02 E-value=0.00029 Score=76.74 Aligned_cols=229 Identities=12% Similarity=0.063 Sum_probs=135.8
Q ss_pred CCHhHHHHHHHHHHHhccCChHHHHHH--HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHH--HHHHHH
Q 003195 128 PDKNVQDAMAHIWKSLVADPKRTIDEH--LDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHL--RRIWTA 203 (840)
Q Consensus 128 p~~~VR~a~~~iw~~Lv~d~~~~i~~~--~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L--~~l~~~ 203 (840)
+++.+|+.+..++..|..+........ ....+|.|+..+.+++..+|+.+|.||.+|..+.. +.....+ ...++.
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~-~~~k~~i~~~G~Ip~ 174 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD-VNSKKTLREVGSVKA 174 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCC-HHHHHHHHHTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCC-HHHHHHHHHCCCHHH
Confidence 357899988888888886543222221 23467888888989899999999999999976422 1122221 135677
Q ss_pred HHHH-hccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhH--HHhHHHHHHhcccCCchh----HHHHHHHHHHH
Q 003195 204 AFRA-MDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQS--MDIVLPFLLAEGILSKVD----SISKASIGVVM 276 (840)
Q Consensus 204 l~~~-ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~--l~~lLP~Ll~~gL~s~~~----evr~~al~~L~ 276 (840)
+.++ +....+.+++.|..++++++.. ++. ....+ ....+|.|.+- +.++.+ +++..++.+|.
T Consensus 175 Lv~lL~~~~~~~~~~~A~~aL~nLs~~----~~~------nk~~i~~~~Gai~~Lv~l-L~~~~~~~~~~v~~~A~~aL~ 243 (354)
T 3nmw_A 175 LMECALEVKKESTLKSVLSALWNLSAH----CTE------NKADICAVDGALAFLVGT-LTYRSQTNTLAIIESGGGILR 243 (354)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTT----CHH------HHHHHHHSTTHHHHHHHH-TTCCCSSSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcc----Chh------hhHHHHHhcCcHHHHHHH-hccCCCcccHHHHHHHHHHHH
Confidence 7775 4556678888887778777531 110 01122 23467777642 333222 58888888888
Q ss_pred HHHHhh--ccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhh
Q 003195 277 KLVKGA--GIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTES 354 (840)
Q Consensus 277 ~la~~~--g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~ 354 (840)
+++... .+. .|..+..
T Consensus 244 nLs~~~a~~~~-------------------------------------------~~~~i~~------------------- 261 (354)
T 3nmw_A 244 NVSSLIATNED-------------------------------------------HRQILRE------------------- 261 (354)
T ss_dssp HHHHHHTTCHH-------------------------------------------HHHHHHT-------------------
T ss_pred HHHhhccCCHH-------------------------------------------HHHHHHH-------------------
Confidence 877421 110 0000000
Q ss_pred HhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccH-HHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCH
Q 003195 355 LDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYT-SMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATP 433 (840)
Q Consensus 355 l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~-~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~ 433 (840)
...+|.|++.++++ ...++..|+.+|..|+........... ...++.|...+ ...+..+++.++.|+..+....+.
T Consensus 262 -~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL-~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 262 -NNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI-HSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp -TTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTT-TCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred -cCCHHHHHHHHcCC-ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCCHH
Confidence 12346666666653 445667778888777532111111111 13567777777 567888999999998888765443
No 90
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.94 E-value=0.00025 Score=78.59 Aligned_cols=241 Identities=14% Similarity=0.141 Sum_probs=150.7
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHccCCc----hhhhHHHHHHHHHHHHHh--c-------c-ccHHHHHHHHHHH
Q 003195 158 IFDDLLIQSGSRLWRSREASCLSLADIIQGRKF----DQVGKHLRRIWTAAFRAM--D-------D-IKETVRTAGDKLC 223 (840)
Q Consensus 158 Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~----~~l~~~L~~l~~~l~~~l--d-------D-~~~~VR~aA~~~~ 223 (840)
+...|+..+-|+.|.+|.+|+.||.+++...+. ....+. ++...++-++ | | .-.-||+++++++
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~--DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtL 252 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS--KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLL 252 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT--THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH--HHHHHHHHHHHhccccccccCeeeeehHHHHHHHH
Confidence 778889999999999999999999999974421 111111 4444444333 2 2 4457999998877
Q ss_pred HHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccC
Q 003195 224 RSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSS 303 (840)
Q Consensus 224 ~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~ 303 (840)
..+ . .+++. .+ ++-.|+ +++..+.|++|...+-.|--+ .++..-++.+++.++..|++
T Consensus 253 GaL-~----hLp~e----------~~-IL~qLV-~~l~~~~WEVRHGGLLGLKYL-----~DLL~~Ld~Vv~aVL~GL~D 310 (800)
T 3oc3_A 253 SRI-Y----PLIGP----------ND-IIEQLV-GFLDSGDWQVQFSGLIALGYL-----KEFVEDKDGLCRKLVSLLSS 310 (800)
T ss_dssp HHH-T----TTSCS----------CC-HHHHHT-TGGGCSCHHHHHHHHHHHHHT-----GGGCCCHHHHHHHHHHHTTC
T ss_pred HHH-H----hCChh----------HH-HHHHHH-hhcCCCCeeehhhhHHHHHHH-----HHHHHHHHHHHHHHHhhcCC
Confidence 665 2 22221 12 233333 356667899999888887766 22222389999999988886
Q ss_pred chhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccCCCc-hHhHHHHHH
Q 003195 304 LEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRSGIGLN-TRVGVASFI 382 (840)
Q Consensus 304 ~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~~~~-~r~~a~~~l 382 (840)
.+.. +|..+ .+.+++....+.++.++..+-+.+.+-.++. +.....+.|
T Consensus 311 ~DDD---------------------VRAVA---------AetLiPIA~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLL 360 (800)
T 3oc3_A 311 PDED---------------------IKLLS---------AELLCHFPITDSLDLVLEKCWKNIESEELISVSKTSNLSLL 360 (800)
T ss_dssp SSHH---------------------HHHHH---------HHHHTTSCCSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHH
T ss_pred cccH---------------------HHHHH---------HHHhhhhcchhhHHHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 5433 33322 1233343344456666776666666543333 233456667
Q ss_pred HHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhh--cCChhhhHHHHHH
Q 003195 383 SLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALH--IDDKNSQISCAIL 460 (840)
Q Consensus 383 ~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~--~~d~~~r~~~~~~ 460 (840)
+.|++.-.. .. -.+.+++.|.+.+ .+.-.+||+++..++-.++ ..+++..+.+.. .++++.+..+..+
T Consensus 361 AkL~s~p~~-a~-~dp~LVPRL~PFL-RHtITSVR~AVL~TL~tfL-------~~~~LRLIFQNILLE~neeIl~lS~~V 430 (800)
T 3oc3_A 361 TKIYRENPE-LS-IPPERLKDIFPCF-TSPVPEVRTSILNMVKNLS-------EESIDFLVAEVVLIEEKDEIREMAIKL 430 (800)
T ss_dssp HHHHHHCTT-CC-CCSGGGGGTGGGG-TCSSHHHHHHHHHHTTTCC-------CHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHcCCcc-cc-cChHHHHHHHhhh-cCCcHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 666654432 11 1128889999999 7888999999999987766 234444444433 2567788777777
Q ss_pred HH
Q 003195 461 LK 462 (840)
Q Consensus 461 i~ 462 (840)
+.
T Consensus 431 Wk 432 (800)
T 3oc3_A 431 LK 432 (800)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 91
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.93 E-value=0.001 Score=70.45 Aligned_cols=177 Identities=11% Similarity=-0.057 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHhhhcCCHH-HH--HHHHHHHHH-hhc-CChhhhHHHHHHHHHHHhhchhhhhhhH-hhHhHHHHHhh-c
Q 003195 416 AKRAFASACASVLKYATPS-QA--QKLIEETAA-LHI-DDKNSQISCAILLKSYSSVASDVLSGYH-AVIVPVIFISR-F 488 (840)
Q Consensus 416 Vr~~a~~Alg~l~~~~~~~-~~--~~li~~l~~-~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~-~~llP~l~~~~-~ 488 (840)
-|..+...+..+++..+.. .+ ..-++.++. .+. .+++.|..++.+++.++...+..-.... ...+|.++... .
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~ 135 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR 135 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 4555566666665432111 11 123567777 554 5678999999999999876543211111 12455444433 3
Q ss_pred CCchHHHHHHHHHHHHhcCCChhhHHhhH-HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH-HHHHHHHH
Q 003195 489 EDDKYVSDLFEELWEENTSGDRVTLQLYL-GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH-HVLLESIM 566 (840)
Q Consensus 489 d~d~~vr~~~~~i~~~~~~~~~~~i~~yl-~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l-~~llp~L~ 566 (840)
++++.+|..+...+..++.+.+.....+. ...++.+...|.+++.++|+.|+.+|+.++....+...... ..++|.|+
T Consensus 136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv 215 (296)
T 1xqr_A 136 DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215 (296)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHH
Confidence 55678887766666666665444343443 25788888899999999999999999999987333322221 35788888
Q ss_pred HhcCCCCchhHHHHHHHHHHHHHhcc
Q 003195 567 KEVPGRLWEGKDALLYAIGSISTSCH 592 (840)
Q Consensus 567 ~~l~~r~~~~Ke~vl~aL~~l~~~~~ 592 (840)
.-+.......++.++.+|+.++.+..
T Consensus 216 ~LL~~~d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 216 ALVRTEHSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCChhHHHHHHHHHHHHHhCCh
Confidence 88888888999999999999998743
No 92
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.92 E-value=3.7e-06 Score=77.94 Aligned_cols=118 Identities=13% Similarity=0.047 Sum_probs=79.6
Q ss_pred chHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHH
Q 003195 73 PDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTID 152 (840)
Q Consensus 73 p~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~ 152 (840)
|.-+..+..+.++. +|.-|..|+.+|+.+-. + -+|.|...+.|+++.||..+...+..+-.
T Consensus 11 ~~~~~~l~~~L~~~-~~~vR~~A~~~L~~~~~-------~----~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADE-NKWVRRDVSTALSRMGD-------E----AFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSS-CCCSSSSCCSSTTSCSS-------T----THHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCC-CHHHHHHHHHHHHHhCc-------h----HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 34455566666554 58888889888875421 1 14778888899999999999887776642
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHH
Q 003195 153 EHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLC 223 (840)
Q Consensus 153 ~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~ 223 (840)
+..++.|...+.|++|+||..++.||+.+-. +..++.+...++|..+.||.+|..++
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYL 128 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1224445666678999999999999998731 24566677778899999999886654
No 93
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.76 E-value=0.00071 Score=73.70 Aligned_cols=218 Identities=8% Similarity=-0.025 Sum_probs=139.2
Q ss_pred hHhHHHHHHHHHHHHhccCcccc---HHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHH---HH--HHHHHHHH
Q 003195 374 TRVGVASFISLLVQKIGMDIKPY---TSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQ---AQ--KLIEETAA 445 (840)
Q Consensus 374 ~r~~a~~~l~~L~~~~~~~~~p~---~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~---~~--~li~~l~~ 445 (840)
.+..|+.+|..|+.... ..+.. .+..++.|+..| ...+..+++.++.+++.+....+++. +. .-++.+++
T Consensus 100 ~q~~Aa~aL~nLa~~~~-~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~ 177 (354)
T 3nmw_A 100 LRRYAGMALTNLTFGDV-ANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 177 (354)
T ss_dssp HHHHHHHHHHHHTSSCH-HHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHcCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHH
Confidence 46678888888763221 11111 235688999998 67789999999999999976433332 21 34677888
Q ss_pred hhc--CChhhhHHHHHHHHHHHhhchhhhhhhH--hhHhHHHHHhhcCCch----HHHHHHHHHHHHhcC---CChhhHH
Q 003195 446 LHI--DDKNSQISCAILLKSYSSVASDVLSGYH--AVIVPVIFISRFEDDK----YVSDLFEELWEENTS---GDRVTLQ 514 (840)
Q Consensus 446 ~~~--~d~~~r~~~~~~i~ai~~~~~~~f~~~~--~~llP~l~~~~~d~d~----~vr~~~~~i~~~~~~---~~~~~i~ 514 (840)
.+. .+++.+..++.++..++....+.-.... ...+|.+.......++ ++++....++..+.. +......
T Consensus 178 lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~ 257 (354)
T 3nmw_A 178 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ 257 (354)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence 642 4677788888888888874433211221 2356665544433222 466544444433332 2322222
Q ss_pred hhH-HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhh-HHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcc
Q 003195 515 LYL-GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNY-HHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCH 592 (840)
Q Consensus 515 ~yl-~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~-l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~ 592 (840)
... ...++.+.+.|.+.+.++++.|+.+|+.++....+..... -...+|.|.+-+...+...|+.+..||..|+...+
T Consensus 258 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 258 ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 222 2367888888999999999999999999984211211111 13468999999988888999999999999998655
Q ss_pred c
Q 003195 593 K 593 (840)
Q Consensus 593 ~ 593 (840)
.
T Consensus 338 ~ 338 (354)
T 3nmw_A 338 A 338 (354)
T ss_dssp G
T ss_pred H
Confidence 4
No 94
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.70 E-value=0.0009 Score=79.74 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=50.1
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHH-HHHHhccccHHHHHHHHHHHHHHH
Q 003195 157 LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTA-AFRAMDDIKETVRTAGDKLCRSVT 227 (840)
Q Consensus 157 ~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~-l~~~ldD~~~~VR~aA~~~~~~l~ 227 (840)
.|+| +++.+.+.+++.|+.||.|+.+|++......+.-+- .++.. +.+++.|....||.+|..++++|+
T Consensus 35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~-~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~ 104 (684)
T 4gmo_A 35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLRE-QVVHIVLTETLTDNNIDSRAAGWEILKVLA 104 (684)
T ss_dssp TTHH-HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHT-THHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred hHHH-HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHc-CCHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3455 556688999999999999999999753332332222 34444 455689999999999988888875
No 95
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.69 E-value=0.0019 Score=79.35 Aligned_cols=367 Identities=12% Similarity=0.063 Sum_probs=203.6
Q ss_pred hHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhc----cccccchHHHHHHHHHhcc-CchhHhHHHHHHhhhhcc
Q 003195 246 QSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAG----IAIRPHLSDLVSCMLESLS-SLEDQGLNYIELHAANAG 320 (840)
Q Consensus 246 ~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g----~~l~p~lp~Lv~~Ll~~ls-~~ep~~~~~l~~~a~~~~ 320 (840)
..++.+.|.+- +=..++++.-+..+.+++..++.+.. +.......-+.|.|...+. +..|+...+-.
T Consensus 504 ~~l~~l~~~~e-~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~------- 575 (997)
T 1vsy_5 504 LNMSDLFELCE-SYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWS------- 575 (997)
T ss_dssp CCGGGHHHHHH-HTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHH-------
T ss_pred hhHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHH-------
Confidence 34566777654 21234555667788899888877532 2334455567777777777 46555433211
Q ss_pred cchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhHhhHHHHHHHHHhc----cCCCc-hHhHHHHHHHHHHHHhccCccc
Q 003195 321 IQTEKLENLRISIAKGSPMWDTLDLCINVVDTESLDQLVPHLARLVRS----GIGLN-TRVGVASFISLLVQKIGMDIKP 395 (840)
Q Consensus 321 ~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~----~~~~~-~r~~a~~~l~~L~~~~~~~~~p 395 (840)
.++.-+....|...+..++..+.. ++. +.+.. ....-+.++..+....+-.+..
T Consensus 576 --------------------~~i~~~~~~~DprR~~~L~e~l~~-~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~ 634 (997)
T 1vsy_5 576 --------------------TLAWWLPAVVDLRRSKTFFCHFIN-ADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD 634 (997)
T ss_dssp --------------------HHHHHHHHHSCGGGCHHHHHHHTC-CCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC
T ss_pred --------------------HHHHHHhcCCChhhhHHHHHHHHH-hhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc
Confidence 123334444554444433333311 010 00111 1112345555556666666554
Q ss_pred cHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCC---H-------------------------HHHHHHHHHHHHhh
Q 003195 396 YTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT---P-------------------------SQAQKLIEETAALH 447 (840)
Q Consensus 396 ~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~---~-------------------------~~~~~li~~l~~~~ 447 (840)
.++++..++ + +++...||++....+..+....- . +.+...+..+.+..
T Consensus 635 -~~~~l~~~~--l-~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l 710 (997)
T 1vsy_5 635 -VGKLFDELV--F-DHPYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEII 710 (997)
T ss_dssp -CHHHHHHCC--S-CCSCHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHH--h-CCChHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHH
Confidence 778887777 6 78899999999999887776541 1 11111111111111
Q ss_pred c---C---C--h------hhh---HHHHHHHH-HHHhhchhhhhhhHhh-HhHHHHHhhcCCch-HHHHH-HHHHHHHhc
Q 003195 448 I---D---D--K------NSQ---ISCAILLK-SYSSVASDVLSGYHAV-IVPVIFISRFEDDK-YVSDL-FEELWEENT 506 (840)
Q Consensus 448 ~---~---d--~------~~r---~~~~~~i~-ai~~~~~~~f~~~~~~-llP~l~~~~~d~d~-~vr~~-~~~i~~~~~ 506 (840)
. . + + +.. .++..-+. .+.....-.+.++... ++|+++....+.+. ++... +..++..+.
T Consensus 711 ~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls 790 (997)
T 1vsy_5 711 KNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLG 790 (997)
T ss_dssp TGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTS
T ss_pred HHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHh
Confidence 1 0 0 0 111 12222222 2222223346677776 88877654444433 45443 334444333
Q ss_pred CCChhhHHhhHHHHHHHHHhhhc-CCCHHHHHHHHHHHHHHHHHhCcchh-hhHHHHHHHHHHhcCCCC-chhHHHHHHH
Q 003195 507 SGDRVTLQLYLGEIVSLICEGIA-SSSWSSKRKSAKAICKLGEILGESLS-NYHHVLLESIMKEVPGRL-WEGKDALLYA 583 (840)
Q Consensus 507 ~~~~~~i~~yl~~Il~~l~~~L~-d~s~~vR~~Aa~~L~~La~~~~~~l~-~~l~~llp~L~~~l~~r~-~~~Ke~vl~a 583 (840)
... --..+++.++..+.+... +++| +|.++...+..+.-.---.+. .....++..+.+.|.+.. -++|+.+-.+
T Consensus 791 ~~~--~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~t 867 (997)
T 1vsy_5 791 YMP--IRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASI 867 (997)
T ss_dssp SSC--CCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHH
T ss_pred cCC--CCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 221 123567778888877666 6899 999988888877743211222 234678899999999998 9999999999
Q ss_pred HHHHHHhc-ccccccCCCCchHHHHHHHHHHH------------hhcCHHHHHHHHHHHHHHHHHcCCcc-hHHhHHHHH
Q 003195 584 IGSISTSC-HKDISAEDPTTPFAIVDMVSSAC------------RKKIKKYREAAFSCLEQVIKAFRDPK-FFNIIFPLL 649 (840)
Q Consensus 584 L~~l~~~~-~~~~~~~~~~~~~~i~~~l~~~~------------~~~~~~~R~~Al~~L~~l~~~~~~~~-l~~~v~~i~ 649 (840)
|+.++... .... ...++..+.+.+ .+++..-|-+|+-.|+.++.++|-+. +.+-+++++
T Consensus 868 Lsgll~c~~~~~~-------~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l 940 (997)
T 1vsy_5 868 LSDIVHNWKEEQP-------LLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNL 940 (997)
T ss_dssp HHHHHHSCCSHHH-------HHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHH
T ss_pred HHHHHHcCCchhh-------HHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHH
Confidence 99998754 2010 111111111111 01122567888899999999999743 367777787
Q ss_pred Hhhccc
Q 003195 650 FEMCGS 655 (840)
Q Consensus 650 ~~l~~~ 655 (840)
..++..
T Consensus 941 ~~La~~ 946 (997)
T 1vsy_5 941 SNLSSW 946 (997)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 777644
No 96
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.63 E-value=1e-05 Score=74.93 Aligned_cols=120 Identities=13% Similarity=0.127 Sum_probs=77.9
Q ss_pred hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhh
Q 003195 115 RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVG 194 (840)
Q Consensus 115 ~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~ 194 (840)
+.-+|.|...+.|+++.||..+...+..+-. + . ++.|+..+.|++|.||..++.+|+.+-.
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-~------~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-E------A----FEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS-T------T----HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-h------H----HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 3456777777899999999987655544322 1 1 2557778889999999999999988631
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHH
Q 003195 195 KHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGV 274 (840)
Q Consensus 195 ~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~ 274 (840)
+..++.+.+.++|..+.||.+|..++..++ + ...+|.|.. .+.+++..||..+..+
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~-------~-------------~~a~~~L~~-~l~d~~~~vr~~A~~a 127 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIG-------G-------------ERVRAAMEK-LAETGTGFARKVAVNY 127 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC-------S-------------HHHHHHHHH-HTTSCCTHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------c-------------HHHHHHHHH-HHhCCCHHHHHHHHHH
Confidence 244666777788999999999866655441 1 123555543 3556678899999888
Q ss_pred HHH
Q 003195 275 VMK 277 (840)
Q Consensus 275 L~~ 277 (840)
|.+
T Consensus 128 L~~ 130 (131)
T 1te4_A 128 LET 130 (131)
T ss_dssp GGG
T ss_pred HHh
Confidence 754
No 97
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.51 E-value=0.018 Score=70.76 Aligned_cols=127 Identities=10% Similarity=-0.014 Sum_probs=86.0
Q ss_pred hhhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccc-cHHHHHHHHHHhHhhcCc-HHHHHHHHHHHHHhhh
Q 003195 352 TESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKP-YTSMLLRLLFPVVKEEKS-AAAKRAFASACASVLK 429 (840)
Q Consensus 352 ~~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p-~~~~lL~~Ll~~l~~d~~-~~Vr~~a~~Alg~l~~ 429 (840)
.+.++.++..+.+..+.+..| .|..++.++..+.-+.--.+.+ ....++..++..| .|++ .+||+.|+.+++.+++
T Consensus 796 ~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L-~D~q~~EVRe~Aa~tLsgll~ 873 (997)
T 1vsy_5 796 KNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNL-YNEQFVEVRVRAASILSDIVH 873 (997)
T ss_dssp HHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTT-TCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHHH
Confidence 334455555555555544578 9999999987776554444433 3457888888888 7999 9999999999999998
Q ss_pred cC-CHHHHHHHHHHHHHhhcC--C-----------hhhhHHHHHHHHHHHhhchhhh--hhhHhhHh
Q 003195 430 YA-TPSQAQKLIEETAALHID--D-----------KNSQISCAILLKSYSSVASDVL--SGYHAVIV 480 (840)
Q Consensus 430 ~~-~~~~~~~li~~l~~~~~~--d-----------~~~r~~~~~~i~ai~~~~~~~f--~~~~~~ll 480 (840)
+. ....+..++..+.+.+.. . ...|-++...++++....|-.+ -++++.++
T Consensus 874 c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l 940 (997)
T 1vsy_5 874 NWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNL 940 (997)
T ss_dssp SCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHH
T ss_pred cCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHH
Confidence 87 656666777777666522 1 1345677788888877765433 24444444
No 98
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.46 E-value=0.06 Score=61.89 Aligned_cols=506 Identities=13% Similarity=0.145 Sum_probs=246.9
Q ss_pred hHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhchh-hhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChH---
Q 003195 74 DLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALKPH-LRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKR--- 149 (840)
Q Consensus 74 ~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~~~-l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~--- 149 (840)
+-|.++.+-..+.....-||+|..||-+..++.+..+..+ ++.++-.|-+...|+ ..|+.+.......+..+...
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~-e~v~~~LetL~~l~~~~~~~~~~ 99 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDS-EIIGYALDTLYNIISNDEEEEVE 99 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCH-HHHHHHHHHHHHHHCCC------
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccH-HHHHHHHHHHHHHhCCCCccccc
Confidence 3456666655555567889999999988877765555443 666777775444333 55666555555666544321
Q ss_pred --------HHHH-HH------HHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHH---HHHHHHHHHhccc
Q 003195 150 --------TIDE-HL------DLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLR---RIWTAAFRAMDDI 211 (840)
Q Consensus 150 --------~i~~-~~------~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~---~l~~~l~~~ldD~ 211 (840)
.+.. +- +.-++.|+..+.+.+..+|..+...|..|+.+++. .+..++. .-++.+..+|+|.
T Consensus 100 ~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~-~~Q~~Il~~p~gi~~Lv~lL~d~ 178 (651)
T 3grl_A 100 ENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGP-QVQQIILVSPMGVSRLMDLLADS 178 (651)
T ss_dssp --------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHH-HHHHHHHHSTTHHHHHHGGGGCS
T ss_pred ccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcH-HHHHHHHhCcccHHHHHHHHhCc
Confidence 0111 11 23466788888999999999999999999987753 2444433 4678888999999
Q ss_pred cHHHHHHHHHHHHHHHHHH--HHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhc---ccc
Q 003195 212 KETVRTAGDKLCRSVTSLT--IRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAG---IAI 286 (840)
Q Consensus 212 ~~~VR~aA~~~~~~l~~~~--ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g---~~l 286 (840)
++.+|..|.-++..+++-. ++.+ ...+..++.++-.+-++|.. +...+-.-|+..+.++.+.-. ..|
T Consensus 179 rE~iRneallLL~~Lt~~n~~iQkl-------VAFEnaFe~Lf~Ii~~Eg~~-~Ggivv~DCL~ll~nLLr~N~sNQ~~F 250 (651)
T 3grl_A 179 REVIRNDGVLLLQALTRSNGAIQKI-------VAFENAFERLLDIITEEGNS-DGGIVVEDCLILLQNLLKNNNSNQNFF 250 (651)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHH-------HHHTTHHHHHHHHHHHHTGG-GSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHH-------HHHhccHHHHHHHHHhcCCC-ccchhHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999988887764210 1111 01223445555555445543 344677778888888887421 112
Q ss_pred c--cchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChhhH--hhHHHHH
Q 003195 287 R--PHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTESL--DQLVPHL 362 (840)
Q Consensus 287 ~--p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~~l--~~lvp~L 362 (840)
+ .++|.+.+. +... ++...+..++..+. .-.++-.|.-...++++...-. + ...+ ..+++.+
T Consensus 251 rEt~~i~~L~~L----L~~~-~~~~~W~~Qk~~N~---~~~L~iIrlLv~~~~~~~~t~~-n-----Q~~~~~~g~l~~L 316 (651)
T 3grl_A 251 KEGSYIQRMKPW----FEVG-DENSGWSAQKVTNL---HLMLQLVRVLVSPNNPPGATSS-C-----QKAMFQCGLLQQL 316 (651)
T ss_dssp HHTTCGGGGGGG----GCCC-SCSSCCCHHHHHHH---HHHHHHHHHHTCTTSCHHHHHH-H-----HHHHHHTTHHHHH
T ss_pred HHcCCHHHHHHH----hCCC-ccccccHHHHHHHH---HHHHHHHHHHhCCCCCCCCCHH-H-----HHHHHHCCCHHHH
Confidence 1 233333322 2211 11000000010000 0011122222222222110000 0 0001 1356667
Q ss_pred HHHHhcc-CCCchHhHHHHHHHHHHHHh---ccCcc----c---cHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcC
Q 003195 363 ARLVRSG-IGLNTRVGVASFISLLVQKI---GMDIK----P---YTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYA 431 (840)
Q Consensus 363 ~~~lk~~-~~~~~r~~a~~~l~~L~~~~---~~~~~----p---~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~ 431 (840)
++.+..+ +...+|..|+.+++++++.. +..|. | -.+.++..++..+.+.....+|-+++.++...+...
T Consensus 317 l~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N 396 (651)
T 3grl_A 317 CTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKN 396 (651)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCC
Confidence 7776543 23446678888888876421 11111 1 123466666666634456889988888887766443
Q ss_pred CHHHHHHHHHHHHHhhcCChhhhHHHHH-HHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCCh
Q 003195 432 TPSQAQKLIEETAALHIDDKNSQISCAI-LLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDR 510 (840)
Q Consensus 432 ~~~~~~~li~~l~~~~~~d~~~r~~~~~-~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~ 510 (840)
.+. -..+..++...-.+......+.+. ..+++.. .|.+..++..+ ++.-.-.++++-++....+-.. .. .+
T Consensus 397 ~~~-Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s--~d~~~~wfAav---il~hll~~n~~~K~~~l~v~l~-~~-~g 468 (651)
T 3grl_A 397 QKG-QGEIVSTLLPSTIDATGNTVSAGQLLCGGLFS--TDSLSNWCAAV---ALAHALQENATQKEQLLRVQLA-TS-IG 468 (651)
T ss_dssp HHH-HHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTS--SCHHHHHHHHH---HHHHHHTTCHHHHHHHTTCBCC-CC-TT
T ss_pred HHH-HHHHHHhcCCcccccCCCCCCcchhhhhhhcc--CchHHHHHHHH---HHHHHHcCCHHHHHHHHhCccc-cc-CC
Confidence 221 112222221111111111122232 2334332 34444444332 2333334455555543322111 11 11
Q ss_pred hhHHhhHHHHHHHHHhhhcC-CCHHHHHHHHHHHHHHHHHhC---cchhhhHH--HHHHHHHHhcCCCCchhHHHHHHHH
Q 003195 511 VTLQLYLGEIVSLICEGIAS-SSWSSKRKSAKAICKLGEILG---ESLSNYHH--VLLESIMKEVPGRLWEGKDALLYAI 584 (840)
Q Consensus 511 ~~i~~yl~~Il~~l~~~L~d-~s~~vR~~Aa~~L~~La~~~~---~~l~~~l~--~llp~L~~~l~~r~~~~Ke~vl~aL 584 (840)
.... .+++.+...|.. .+.+++- .-|--|+.-+- ..+..|+. .-++.|++.+.... ..-+.+++.|
T Consensus 469 e~~v----tliq~~~~~L~~~~~~ri~v---gyL~LL~~WL~e~p~AV~dFL~~~s~l~~L~~~i~~~~-~~~~~lvqGL 540 (651)
T 3grl_A 469 NPPV----SLLQQCTNILSQGSKIQTRV---GLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENL-GEEEQLVQGL 540 (651)
T ss_dssp CCCC----BHHHHHHHHTTTTCCHHHHH---HHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHHHSCC-CHHHHHHHHH
T ss_pred CCcc----cHHHHHHHHHhcCCchhHHH---HHHHHHHHHHhCChHHHHHHHcCCchHHHHHHHHHhcc-CcchHHHHHH
Confidence 1111 223333333432 2333322 22333333322 23344442 24566666553221 1235678888
Q ss_pred HHHHHhcccccccCCC-Cc-hHHHHHHHHHHHhhcCH
Q 003195 585 GSISTSCHKDISAEDP-TT-PFAIVDMVSSACRKKIK 619 (840)
Q Consensus 585 ~~l~~~~~~~~~~~~~-~~-~~~i~~~l~~~~~~~~~ 619 (840)
.++.-|....+...+. |+ ...+.+.+.+.+.+.++
T Consensus 541 ~a~LLGi~yef~~~~~~~~~R~~l~~ll~~riG~d~y 577 (651)
T 3grl_A 541 CALLLGISIYFNDNSLETYMKEKLKQLIEKRIGKENF 577 (651)
T ss_dssp HHHHHHHHHHTCCSCCGGGCHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHhhccCCCcCccCHHHHHHHHHHhcCHHHH
Confidence 8888777655543332 32 34555566555544443
No 99
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.33 E-value=0.0007 Score=67.86 Aligned_cols=166 Identities=13% Similarity=0.059 Sum_probs=105.1
Q ss_pred HHHHHHHHhhhhhch-hhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH-hhCCCChhHHH
Q 003195 98 GFSKIAKQAGDALKP-HLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLI-QSGSRLWRSRE 175 (840)
Q Consensus 98 ~l~~I~~~~~~~l~~-~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~-~l~~~~wrvR~ 175 (840)
||--|...+..-+.. -+..+++...+...|+.-.||-.+...+..+ . ....+++.+.. ..+|+.||||+
T Consensus 52 gf~~~~~~a~~~~~~~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre 122 (240)
T 3l9t_A 52 GFKEEEQRALTDYKSNDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQE 122 (240)
T ss_dssp --CHHHHHHHHHHHHSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHH
T ss_pred ccHHHHHHHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHH
Confidence 444444444333322 2445566666667999999999988887776 3 12456666666 66799999999
Q ss_pred HHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHH
Q 003195 176 ASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFL 255 (840)
Q Consensus 176 aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~L 255 (840)
.++.++.+++....++. .++.+..-..|.++-||++|...+.. |+.+ + ......+.++|.|
T Consensus 123 ~lA~a~~~~~~~~~pe~-------~l~~~~~W~~d~n~~VRR~Ase~~rp---W~~~---~------~~k~dp~~ll~iL 183 (240)
T 3l9t_A 123 VLAKAFDEFCKKIEYKK-------ALPIIDEWLKSSNLHTRRAATEGLRI---WTNR---P------YFKENPNEAIRRI 183 (240)
T ss_dssp HHHHHHHHHHHHHCTTT-------THHHHHHHHHCSSHHHHHHHHHHTCS---GGGS---T------TTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHH-------HHHHHHHHhcCCCHHHHHHHHHhhHH---Hhcc---c------hhhcCHHHHHHHH
Confidence 99999999986333332 33344455789999999998655432 2211 0 0122335578876
Q ss_pred HhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHh
Q 003195 256 LAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLES 300 (840)
Q Consensus 256 l~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ 300 (840)
- .-..+++.=||......|.+++|.- |+.|-.+++.
T Consensus 184 ~-~L~~D~s~yVrKSVan~LrD~SK~~--------Pd~V~~~~~~ 219 (240)
T 3l9t_A 184 A-DLKEDVSEYVRKSVGNALRDISKKF--------PDLVKIELKN 219 (240)
T ss_dssp H-TTTTCSCHHHHHHHHHHHHHHHTTC--------HHHHHHHHHT
T ss_pred H-HhcCChHHHHHHHHHHHHHHHhhhC--------HHHHHHHHHH
Confidence 4 2233466789999899998887643 4555555553
No 100
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.28 E-value=0.0041 Score=67.19 Aligned_cols=312 Identities=13% Similarity=0.109 Sum_probs=147.9
Q ss_pred HHHHHHhhcCCC--CHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhh
Q 003195 117 LIPKLVRFQYDP--DKN-VQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQV 193 (840)
Q Consensus 117 lvP~L~~~~~Dp--~~~-VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l 193 (840)
++.- -|.+.+| ++. .|+++..++-.+.... ..-+.-...++.++++.+.+++...|+..-.++..+... +.+.+
T Consensus 27 v~qe-~r~fn~~~~~~~kc~~~l~kll~l~~~G~-~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i 103 (355)
T 3tjz_B 27 VLQE-ARVFNETPINPRKCAHILTKILYLINQGE-HLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI 103 (355)
T ss_dssp HHHH-GGGTTSSSCCHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG
T ss_pred HHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHCCC-CCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH
Confidence 5555 4777887 433 3447777776665432 111222446778889999999999999999988777654 22211
Q ss_pred hHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHH
Q 003195 194 GKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIG 273 (840)
Q Consensus 194 ~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~ 273 (840)
-....+.+=++|..+.+|..|.+++..+ . + .++++.+.|.+. +++.+.++-||..|+-
T Consensus 104 -----Lv~Nsl~kDl~~~N~~iR~lALRtL~~I---~----~---------~~m~~~l~~~lk-~~L~d~~pyVRk~A~l 161 (355)
T 3tjz_B 104 -----IVTSSLTKDMTGKEDSYRGPAVRALCQI---T----D---------STMLQAIERYMK-QAIVDKVPSVSSSALV 161 (355)
T ss_dssp -----GGHHHHHHHHHSSCHHHHHHHHHHHHHH---C----C---------TTTHHHHHHHHH-HHHTCSSHHHHHHHHH
T ss_pred -----HHHHHHHhhcCCCcHhHHHHHHHHHhcC---C----C---------HHHHHHHHHHHH-HHcCCCCHHHHHHHHH
Confidence 2334455557899999999885555443 1 2 246677888775 4788899999999999
Q ss_pred HHHHHHHhhccccccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcChh
Q 003195 274 VVMKLVKGAGIAIRPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVDTE 353 (840)
Q Consensus 274 ~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d~~ 353 (840)
+..++....++.++.| ++.+.+++.+..|.++ |-+.. ++..+. ..|..
T Consensus 162 ~~~kL~~~~pe~v~~~----~~~l~~ll~d~n~~V~-~~Al~--------------------------lL~ei~-~~d~~ 209 (355)
T 3tjz_B 162 SSLHLLKCSFDVVKRW----VNEAQEAASSDNIMVQ-YHALG--------------------------LLYHVR-KNDRL 209 (355)
T ss_dssp HHHHHTTTCHHHHHTT----HHHHHHHTTCSSHHHH-HHHHH--------------------------HHHHHH-TTCHH
T ss_pred HHHHHhccCHHHHHHH----HHHHHHHhcCCCccHH-HHHHH--------------------------HHHHHH-hhchH
Confidence 9888776555444333 3445555665555443 21100 111111 11222
Q ss_pred hHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCc-cccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCC
Q 003195 354 SLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDI-KPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYAT 432 (840)
Q Consensus 354 ~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~-~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~ 432 (840)
.+.++++.+.+ . +...--+-+.++ .++...+..= ....+++++.+.+.+ ++.+++|.=+++.++-.+-. .+
T Consensus 210 a~~kLv~~l~~----~-~l~~~~~q~~ll-r~l~~~~~~d~~~~~~~~~~~l~~~L-~~~~~aVvyEa~k~I~~l~~-~~ 281 (355)
T 3tjz_B 210 AVSKMISKFTR----H-GLKSPFAYCMMI-RVASRQLEDEDGSRDSPLFDFIESCL-RNKHEMVVYEAASAIVNLPG-CS 281 (355)
T ss_dssp HHHHHHHHHHS----S-CCSCHHHHHHHH-HHHTCC-----------------CCC-CCSSHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHhc----C-CCcChHHHHHHH-HHHHHhccccchhhHHHHHHHHHHHH-cCCChHHHHHHHHHHHhccC-CC
Confidence 34445554422 1 121122223322 1122222111 123467788888888 78889998888877766533 22
Q ss_pred HHHHHHHHHHHHHhh-cCChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHH
Q 003195 433 PSQAQKLIEETAALH-IDDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDL 497 (840)
Q Consensus 433 ~~~~~~li~~l~~~~-~~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~ 497 (840)
.......+..+...+ ..|++.|-++...+..+....|+.+..+...+..++ .|++..++..
T Consensus 282 ~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li----~d~n~sI~t~ 343 (355)
T 3tjz_B 282 AKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLV----TDANRSIATL 343 (355)
T ss_dssp ------CCCTHHHHHHSSSSSSHHHHHHCC------------------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHc----cCCcHhHHHH
Confidence 222222222222223 257788988888888888877877777777666644 5666666544
No 101
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.22 E-value=0.0072 Score=65.32 Aligned_cols=241 Identities=12% Similarity=0.078 Sum_probs=101.7
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhH
Q 003195 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGK 195 (840)
Q Consensus 116 ~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~ 195 (840)
-.+..|-.=+.||||.||-.+.+....+.... .++.+.+.+.+.+.|+++-||.+|+.+...++... ++.+.
T Consensus 104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~------m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~-pe~v~- 175 (355)
T 3tjz_B 104 IVTSSLTKDMTGKEDSYRGPAVRALCQITDST------MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCS-FDVVK- 175 (355)
T ss_dssp GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT------THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC-HHHHH-
T ss_pred HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC-HHHHH-
Confidence 45666666678899999988888877776432 35566666788888889999998888888877543 23332
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHH
Q 003195 196 HLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVV 275 (840)
Q Consensus 196 ~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L 275 (840)
..+..+-.+++|.++.|.-.|..++..+. .. ....+..+++.+-..++.++ ++.-.+
T Consensus 176 ---~~~~~l~~ll~d~n~~V~~~Al~lL~ei~-------~~-------d~~a~~kLv~~l~~~~l~~~------~~q~~l 232 (355)
T 3tjz_B 176 ---RWVNEAQEAASSDNIMVQYHALGLLYHVR-------KN-------DRLAVSKMISKFTRHGLKSP------FAYCMM 232 (355)
T ss_dssp ---TTHHHHHHHTTCSSHHHHHHHHHHHHHHH-------TT-------CHHHHHHHHHHHHSSCCSCH------HHHHHH
T ss_pred ---HHHHHHHHHhcCCCccHHHHHHHHHHHHH-------hh-------chHHHHHHHHHHhcCCCcCh------HHHHHH
Confidence 34445555678888888765544443331 10 11244556666532123222 111112
Q ss_pred HHHHHhhcccc-ccchHHHHHHHHHhccCchhHhHHHHHHhhhhcccchhhhHHHHHhhccCCcHHHHHHHHHhhcC--h
Q 003195 276 MKLVKGAGIAI-RPHLSDLVSCMLESLSSLEDQGLNYIELHAANAGIQTEKLENLRISIAKGSPMWDTLDLCINVVD--T 352 (840)
Q Consensus 276 ~~la~~~g~~l-~p~lp~Lv~~Ll~~ls~~ep~~~~~l~~~a~~~~~~~~~~d~~R~~~~~~s~l~eal~~~~~~~d--~ 352 (840)
.+++...++.= ...-..+++.+...++...+.+ ++||+..++..-+ .
T Consensus 233 lr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aV------------------------------vyEa~k~I~~l~~~~~ 282 (355)
T 3tjz_B 233 IRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMV------------------------------VYEAASAIVNLPGCSA 282 (355)
T ss_dssp HHHHTCC-----------------CCCCCSSHHH------------------------------HHHHHHHHTC------
T ss_pred HHHHHHhccccchhhHHHHHHHHHHHHcCCChHH------------------------------HHHHHHHHHhccCCCH
Confidence 23222222110 1112334444444454333222 2333333322211 1
Q ss_pred hhHhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHH
Q 003195 353 ESLDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASA 423 (840)
Q Consensus 353 ~~l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~A 423 (840)
..+...++.+...+.++ +.+.|-.|++.|..++...+..+..+-..+.+++ +|.|..++..|+.+
T Consensus 283 ~~~~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li-----~d~n~sI~t~Aitt 347 (355)
T 3tjz_B 283 KELAPAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTACNLDLENLV-----TDANRSIATLAITT 347 (355)
T ss_dssp -----CCCTHHHHHHSS-SSSSHHHHHHCC-----------------------------------------
T ss_pred HHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHc-----cCCcHhHHHHHHHH
Confidence 12222233444445544 6788999999999999998888877666665554 67777776555443
No 102
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.10 E-value=0.0053 Score=62.39 Aligned_cols=174 Identities=11% Similarity=0.004 Sum_probs=108.9
Q ss_pred HHHHHHhhcCCCCH--hHHHHHHHHHHHhccCChHHHHHHHH-HHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhh
Q 003195 117 LIPKLVRFQYDPDK--NVQDAMAHIWKSLVADPKRTIDEHLD-LIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQV 193 (840)
Q Consensus 117 lvP~L~~~~~Dp~~--~VR~a~~~iw~~Lv~d~~~~i~~~~~-~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l 193 (840)
-+|.|..++..+++ .|+..+......+....+........ -.+|.|+..+.+++..+|+.|+.||.+|..+.+....
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 47778888887777 88766655666666322222222221 2467788888888999999999999999864321111
Q ss_pred hHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHh------cccC-----
Q 003195 194 GKHLRRIWTAAFRAMDD-IKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLA------EGIL----- 261 (840)
Q Consensus 194 ~~~L~~l~~~l~~~ldD-~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~------~gL~----- 261 (840)
.-.-..-++.+.+.|.+ .+..+|+.|..++++++.. +. .-..+...-+|.|.+ .|..
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-----~~------~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~ 157 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-----DK------LKNLMITEALLTLTENIIIPFSGWPEGDYP 157 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-----GG------GHHHHHHHHHHHHCCCCCHHHHCCCGGGCC
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-----hh------hHHHHHhccHHHHHHHHhccccCCcccccc
Confidence 11112467777777864 5788999988888888531 11 112344455666653 1322
Q ss_pred ----CchhHHHHHHHHHHHHHHHhh---ccccccchHHHHHHHHHhcc
Q 003195 262 ----SKVDSISKASIGVVMKLVKGA---GIAIRPHLSDLVSCMLESLS 302 (840)
Q Consensus 262 ----s~~~evr~~al~~L~~la~~~---g~~l~p~lp~Lv~~Ll~~ls 302 (840)
+.+.+++..+..+|.+++... .+.++.+ +.+|+.|+..+.
T Consensus 158 ~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~-~Gli~~Lv~~l~ 204 (233)
T 3tt9_A 158 KANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRC-DGLIDSLVHYVR 204 (233)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTS-TTHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHC-CCcHHHHHHHHH
Confidence 125689999999999998632 3344443 446777776554
No 103
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.05 E-value=0.022 Score=56.69 Aligned_cols=201 Identities=16% Similarity=0.089 Sum_probs=141.0
Q ss_pred chHHHHHHHHhccccchhhhhhHHhHHHHHHHHhhhhhc-hhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHH
Q 003195 73 PDLIYKFMDLANYQVSLNSKRGAAFGFSKIAKQAGDALK-PHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTI 151 (840)
Q Consensus 73 p~lv~~fm~la~~~~~w~sr~gA~~~l~~I~~~~~~~l~-~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i 151 (840)
++-+.-+.++.... +-.-+--+.|+++.+.++.++.++ ..+.+++|.+.+...++|..|.=-+..|.+.|..+-+ .-
T Consensus 32 e~~l~~L~~LL~dk-D~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp-L~ 109 (265)
T 3b2a_A 32 KRALFLILELAGED-DETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVP-MG 109 (265)
T ss_dssp HHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC-BC
T ss_pred hhHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC-CC
Confidence 34566666666332 234455678999999998755555 4578999999999999999999999999999997643 23
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Q 003195 152 DEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDKLCRSVTSLTI 231 (840)
Q Consensus 152 ~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~~~~i 231 (840)
++.|..+...+..-+.+++.=.|+-+...++-+ . .....+.+...+++.+...+..|+.+|.+++..++.
T Consensus 110 ~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-k------v~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~--- 179 (265)
T 3b2a_A 110 SKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-Q------PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLN--- 179 (265)
T ss_dssp HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-C------BSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGG---
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-C------cccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhc---
Confidence 456777788888888888888888888888776 2 122234667777777888889999999888776642
Q ss_pred HhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhc
Q 003195 232 RLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESL 301 (840)
Q Consensus 232 r~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~l 301 (840)
+.-++ +....++.. +|.|+ .+.++.++..+++.+-.+.+. |-..++++.+...+
T Consensus 180 ~S~D~-----~i~~~I~~e-I~elL----~~eD~~l~e~aLd~Le~ils~------pi~~~~~~~~~~~~ 233 (265)
T 3b2a_A 180 SSADS-----GHLTLILDE-IPSLL----QNDNEFIVELALDVLEKALSF------PLLENVKIELLKIS 233 (265)
T ss_dssp GCSSC-----CCGGGTTTT-HHHHH----TCSCHHHHHHHHHHHHHHTTS------CCCSCCHHHHHHHH
T ss_pred ccCCH-----HHHHHHHHH-HHHHH----cCCCHHHHHHHHHHHHHHHcC------cccHhHHHHHHHHH
Confidence 11121 123445555 56664 345789999999999888864 33334455555443
No 104
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=96.70 E-value=1.6 Score=52.18 Aligned_cols=362 Identities=9% Similarity=0.035 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHhhCCC-C-hhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHH
Q 003195 154 HLDLIFDDLLIQSGSR-L-WRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDD-IKETVRTAGDKLCRSVTSLT 230 (840)
Q Consensus 154 ~~~~Il~~Ll~~l~~~-~-wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD-~~~~VR~aA~~~~~~l~~~~ 230 (840)
.++.|+..++..+++. . .+. .+.+.-+...+.+...+....||..++..+-...-= ....--..-.+.+..+....
T Consensus 229 q~~~iFt~~lr~l~~~~~~~~~-~~~a~~IV~sl~~~~~~~~~~~L~~Li~~iesy~HPSN~G~Wt~~L~~Fl~~L~~~f 307 (799)
T 1vsy_4 229 QMTFMFNRLQGHLRTDGQIHSY-SRTVKPFVYAINGSKKDRFFEKLVSLAKAIETFIHPSNNGFWTKPNAKFVHAFIKSY 307 (799)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSH-HHHHHHHHTTCCTTSCTTTHHHHHHHHHHHHHHHSTTCCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcCCccch-HHHHHHHHHHcCCCCchHHHHHHHHHHHHHhcccCCCCCCccHHHHHHHHHHHHHHH
Confidence 3777777777766531 1 111 122333444444432345677888887776544321 00001111223333433332
Q ss_pred HHhhhcc-------c-----cccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHH
Q 003195 231 IRLCDVT-------L-----TEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCML 298 (840)
Q Consensus 231 ir~~~~~-------~-----~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll 298 (840)
.+....+ . -.....+..+..++|.++ .|+-+.+..+...+..++..++--.+..-.-.+|.++..+.
T Consensus 308 ~kR~~~Er~~~~~~~p~~~~Lt~~~~~~fV~~l~p~~~-~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y 386 (799)
T 1vsy_4 308 HGRVKYEEDICARGVTNGICLTSFCHEEIVEIFLNIIS-LGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLY 386 (799)
T ss_dssp HHHHHHHTTTTTTTCCCSSSCCHHHHHHHHHHHHHHHH-HHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccCCCchhhcCCHHHHHHHHHHHHHHHH-HHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHH
Confidence 3221110 0 022345678899999887 58999888999999999999997555111124555666666
Q ss_pred HhccC---chhHhHH-HHHHhhhhcccchhhhHHHHHhhccC----CcHHHHHHHHHhhcChhhHhhHHHHHHHHHhccC
Q 003195 299 ESLSS---LEDQGLN-YIELHAANAGIQTEKLENLRISIAKG----SPMWDTLDLCINVVDTESLDQLVPHLARLVRSGI 370 (840)
Q Consensus 299 ~~ls~---~ep~~~~-~l~~~a~~~~~~~~~~d~~R~~~~~~----s~l~eal~~~~~~~d~~~l~~lvp~L~~~lk~~~ 370 (840)
.+|.+ .++-... .+..-.. -.|. ++.. .-+...+..+++.+|.+...+-
T Consensus 387 ~sLe~~~l~e~Hrl~~aL~~l~~----------~~r~-lv~~~~yr~hl~~lL~l~LpgID~ND~~KT------------ 443 (799)
T 1vsy_4 387 DTLADQFINSRHRIISSLKQFTR----------VIRF-IVMDKLYRVHITNVLSMLVSKLDMNDTNLT------------ 443 (799)
T ss_dssp HHHTTTTTTCHHHHHHHHHHHHT----------THHH-HTTSTTGGGHHHHHHHHHHHTCCSSCHHHH------------
T ss_pred HHhccccccchhHHHHHHHHHHH----------HHHH-HhcCcccHHHHHHHHHHHhccCCcccHHHH------------
Confidence 66654 2332110 0000000 0000 0000 1233445555666665443321
Q ss_pred CCchHhHHHHHHHHHHH----------------------------------------------------HhccCccccHH
Q 003195 371 GLNTRVGVASFISLLVQ----------------------------------------------------KIGMDIKPYTS 398 (840)
Q Consensus 371 ~~~~r~~a~~~l~~L~~----------------------------------------------------~~~~~~~p~~~ 398 (840)
..+.+++..++. .....|..+..
T Consensus 444 -----~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~sT~~f~~~v~ 518 (799)
T 1vsy_4 444 -----SNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTFRVDDELLNNAFKASTTVFQSMLK 518 (799)
T ss_dssp -----HHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSCCCCTTHHHHHHHHHTSTHHHHHH
T ss_pred -----HHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccccccccHHHHHHHHHHHHhhHHHHHH
Confidence 112222222221 11233445566
Q ss_pred HHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCC--hhhhHHHHHH----HHHHHhhchhhh
Q 003195 399 MLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDD--KNSQISCAIL----LKSYSSVASDVL 472 (840)
Q Consensus 399 ~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~d--~~~r~~~~~~----i~ai~~~~~~~f 472 (840)
.++.-++..+.++....+-.....++..++..++++.+...+.++.+...++ ......++.+ +.++++..|+.|
T Consensus 519 ~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k~~~fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P~~~ 598 (799)
T 1vsy_4 519 VYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASLLNRNFWSNDSFKEKDPNYELVTIPLAALVRRNNGLS 598 (799)
T ss_dssp HHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHSCSCCCSSSCCTHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 6666777766433445555667778888889999998888888877655322 2233445555 788888888743
Q ss_pred hhhHhhHhHHHHHhh-----cC--------C-c-hHHHHH-HHHHHHHhcCCChhhHHhhHHHHHHHHHhhhc-CCCHHH
Q 003195 473 SGYHAVIVPVIFISR-----FE--------D-D-KYVSDL-FEELWEENTSGDRVTLQLYLGEIVSLICEGIA-SSSWSS 535 (840)
Q Consensus 473 ~~~~~~llP~l~~~~-----~d--------~-d-~~vr~~-~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~-d~s~~v 535 (840)
+.++|.+.... +. + . .+..-. ...++.+.+...+..+-+|.+++++++...+. ..+..+
T Consensus 599 ----~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~g~~lL~y~deL~~il~~~~~~~k~~~~ 674 (799)
T 1vsy_4 599 ----KELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNCHESLLEYSDELITFMKYLYDNVTNPPL 674 (799)
T ss_dssp ----HHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTTGGGGGTTHHHHHHHHHHHHHSCCCHHH
T ss_pred ----HHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHccHHHHHHHHHHHHHHhcCcch
Confidence 34555443210 00 0 0 112222 34777888877777888999999998887764 445544
Q ss_pred HHHHHHHHHHHHHH
Q 003195 536 KRKSAKAICKLGEI 549 (840)
Q Consensus 536 R~~Aa~~L~~La~~ 549 (840)
-..+++.+..+...
T Consensus 675 ~~~~~~ll~~lL~s 688 (799)
T 1vsy_4 675 DVITSIVIHSALAT 688 (799)
T ss_dssp HHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666555543
No 105
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.30 E-value=0.21 Score=49.70 Aligned_cols=147 Identities=12% Similarity=-0.022 Sum_probs=100.2
Q ss_pred HhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchh
Q 003195 476 HAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLS 555 (840)
Q Consensus 476 ~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~ 555 (840)
.+.++|-+.....+.++-+.--+.++..-+..+.+-+- .-...+...+...+.+++.-++..|+..+|.+ ...
T Consensus 73 ~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~-~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~ 145 (265)
T 3b2a_A 73 LERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS-KTFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPL 145 (265)
T ss_dssp HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH-HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBS
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------Ccc
Confidence 34455555433344555443333355555444432221 22344677777778889999999999999988 222
Q ss_pred hhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 003195 556 NYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKA 635 (840)
Q Consensus 556 ~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~ 635 (840)
...+.+...+.+-+.++....|...+.+|..++..++ +......|+.-+...++.+++.++..|+..+-+++..
T Consensus 146 ~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~------D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 146 EDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA------DSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp CCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS------SCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC------CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 2345666777777788888999999999999986554 3356677777778888888999999999999888763
No 106
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.08 E-value=0.13 Score=51.46 Aligned_cols=139 Identities=9% Similarity=0.027 Sum_probs=94.7
Q ss_pred HhhHHHHHHHHHhccCCCchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHH
Q 003195 355 LDQLVPHLARLVRSGIGLNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS 434 (840)
Q Consensus 355 l~~lvp~L~~~lk~~~~~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~ 434 (840)
.+.+++....+.+++. -.+|..|+..|+.+ . ....+++.+.+.+..|.+-.||+-++.+++.++...+++
T Consensus 69 ~~~~~~la~~L~~~~~-deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe 138 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDV-YQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK 138 (240)
T ss_dssp HHHHHHHHHHHHTCSS-HHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCcc-hHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH
Confidence 3455565556666653 46788888866544 1 337788888885657999999999999999998633333
Q ss_pred HHHHHHHHHHHhhc-CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCC
Q 003195 435 QAQKLIEETAALHI-DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSG 508 (840)
Q Consensus 435 ~~~~li~~l~~~~~-~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~ 508 (840)
. .++.+..+.. +|..+|+.++....-+++. ..++...+.++|.+-..+.|++..||......+.++.-.
T Consensus 139 ~---~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~--~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 139 K---ALPIIDEWLKSSNLHTRRAATEGLRIWTNR--PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp T---THHHHHHHHHCSSHHHHHHHHHHTCSGGGS--TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred H---HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc--chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 2 2333444443 4677899988877656543 245566666888887778888999998877777665443
No 107
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.95 E-value=0.0034 Score=64.33 Aligned_cols=39 Identities=13% Similarity=-0.105 Sum_probs=21.8
Q ss_pred cCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q 003195 125 QYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLS 180 (840)
Q Consensus 125 ~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~A 180 (840)
..||++.||.++... +. . ..+...+.|++|+||..++.+
T Consensus 59 l~d~~~~VR~~AA~~---l~---~-----------~~l~~L~~D~~~~VR~~aA~~ 97 (244)
T 1lrv_A 59 LADPFWERRAIAVRY---SP---V-----------EALTPLIRDSDEVVRRAVAYR 97 (244)
T ss_dssp TTCSSHHHHHHHHTT---SC---G-----------GGGGGGTTCSSHHHHHHHHTT
T ss_pred hcCCCHHHHHHHHHh---CC---H-----------HHHHHHccCcCHHHHHHHHHH
Confidence 477777777766442 11 0 013334467777777766643
No 108
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=94.30 E-value=1 Score=51.74 Aligned_cols=197 Identities=11% Similarity=0.063 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhhc--CChhhhHHHHHHHHHHHhhchhhhhhhHhhHhHHHHH-hhcC-CchH-HHHHHHHHHHHhcCCCh
Q 003195 436 AQKLIEETAALHI--DDKNSQISCAILLKSYSSVASDVLSGYHAVIVPVIFI-SRFE-DDKY-VSDLFEELWEENTSGDR 510 (840)
Q Consensus 436 ~~~li~~l~~~~~--~d~~~r~~~~~~i~ai~~~~~~~f~~~~~~llP~l~~-~~~d-~d~~-vr~~~~~i~~~~~~~~~ 510 (840)
..+.++.|.+++. .-.+.|+.+...+.++++.++..+... -+|.+.. ...| +|.+ ++...+-+..-+.+...
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~---~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQ---AMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHH---THHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhh---hHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 4555666666653 124568888888899888776544332 2332222 2333 3444 44433322222332211
Q ss_pred -----------hhHH-hhH------HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH---HHHHHHHHHhc
Q 003195 511 -----------VTLQ-LYL------GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH---HVLLESIMKEV 569 (840)
Q Consensus 511 -----------~~i~-~yl------~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l---~~llp~L~~~l 569 (840)
..+. .+. ++-++.+...|++.+..+|..+.++|..++...++.....+ +.-+|.|+..|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 0111 111 34578888999999999999999999999998877555432 35788999999
Q ss_pred CCCCchhHHHHHHHHHHHHHhcccccc-cCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 003195 570 PGRLWEGKDALLYAIGSISTSCHKDIS-AEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKA 635 (840)
Q Consensus 570 ~~r~~~~Ke~vl~aL~~l~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~ 635 (840)
.++....|.+.+..|..+..+..+-.. -.+..-.+.++..+..+-.-+.-.+-+.|+.++..+++.
T Consensus 176 ~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~ 242 (651)
T 3grl_A 176 ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN 242 (651)
T ss_dssp GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT
T ss_pred hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc
Confidence 998888999999999999876543110 001123466666666554334557888899999998874
No 109
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=93.69 E-value=0.51 Score=55.83 Aligned_cols=73 Identities=19% Similarity=0.130 Sum_probs=52.7
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH-hhCCCChhHHHHHHHHHHHHHccCC
Q 003195 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLI-QSGSRLWRSREASCLSLADIIQGRK 189 (840)
Q Consensus 116 ~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~-~l~~~~wrvR~aac~Al~~Ll~~~~ 189 (840)
+++|.| ..+..|++.+|..++.++..|+.|+....--....++..++. .+.|++-.||++|+.||.+|....+
T Consensus 35 ~i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 35 KILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp TTHHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 355543 346899999999999999999987643222223345555544 5789999999999999999976543
No 110
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.61 E-value=8.4 Score=42.50 Aligned_cols=226 Identities=12% Similarity=0.065 Sum_probs=134.9
Q ss_pred hHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhccccc
Q 003195 516 YLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDI 595 (840)
Q Consensus 516 yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~ 595 (840)
..++-++.....+.|.+..||.+|.+.|..+|+. .+++.+..+|.+-|+.........+=.+|.++...-.
T Consensus 62 l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dp--- 132 (507)
T 3u0r_A 62 LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDA--- 132 (507)
T ss_dssp GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCH---
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcCh---
Confidence 4455677777888999999999999999999964 4578899999999987777778888889988887443
Q ss_pred ccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCcc----hHHhHHHHHHhhcccccccCCCCCCCCCCcc
Q 003195 596 SAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPK----FFNIIFPLLFEMCGSTALNKSGQVPLPSDAS 671 (840)
Q Consensus 596 ~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~~----l~~~v~~i~~~l~~~~~~~~~~~~~~~~~~~ 671 (840)
...+..+..++...+..+|..++.-|..-+..++.+. +...+...+.++-.+ +.
T Consensus 133 --------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~D-VT------------- 190 (507)
T 3u0r_A 133 --------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLED-VT------------- 190 (507)
T ss_dssp --------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTS-CC-------------
T ss_pred --------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhcc-cc-------------
Confidence 3344455555555678999999999988887777643 334444433333322 11
Q ss_pred chhhhccccCCchhHHHhhhhhhHHhhchhhHHHhhhhhHHHHHhhcCCCCChH--------HHHHHHHhhhc-CCCCCC
Q 003195 672 KEESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQEKNLVQLFTISLSPGFPWT--------ELCSRLQKTLD-DSAGTS 742 (840)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~l~-~~~~~~ 742 (840)
.+|+ . .++++|. ....+..+ .....|++.+..-..-..+|. ++.+=+...+- -+...
T Consensus 191 ----~~EF--~---L~m~lL~-~lkl~~t~---~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v- 256 (507)
T 3u0r_A 191 ----GEEF--V---LFMKILS-GLKSLQTV---SGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNV- 256 (507)
T ss_dssp ----HHHH--H---HHHHHHH-TSGGGSSH---HHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTB-
T ss_pred ----HHHH--H---HHHHHHH-hcccccCc---hHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCC-
Confidence 3344 2 2334331 11122221 113467777766321223333 33332222222 12222
Q ss_pred CccchhHHHHHHHhhhhhhhhhhcccchhh-hhhHhhhHHHHHHHHHhh
Q 003195 743 PHAGISSLIQELFHTVSPKVVECISTVKIA-QVHISASECLLEICKLFR 790 (840)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-~vr~~a~~~l~~i~~~~~ 790 (840)
.-..+|.=+.+.+.|.+- .+...-.. +.|..-+-+++|+..+.+
T Consensus 257 ---~StkFv~y~~~kIlP~l~-~L~e~~~~~~~kL~LLK~lAE~s~~~~ 301 (507)
T 3u0r_A 257 ---HSTRFVTYFCEQVLPNLG-TLTTPVEGLDIQLEVLKLLAEMSSFCG 301 (507)
T ss_dssp ---CCHHHHHHHHHHTGGGTT-CCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred ---ChHHHHHHHHHhhccchh-hccccccchHHHHHHHHHHHHHccCCC
Confidence 224566666667777653 33111112 378888888888887766
No 111
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=92.77 E-value=3.8 Score=39.87 Aligned_cols=88 Identities=14% Similarity=0.165 Sum_probs=63.7
Q ss_pred HHHHHhcCCChhhHHhhHHHHHHHHHhhhcCC---CHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCC--CCc
Q 003195 500 ELWEENTSGDRVTLQLYLGEIVSLICEGIASS---SWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPG--RLW 574 (840)
Q Consensus 500 ~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~---s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~--r~~ 574 (840)
++...+..+..-.+.+|+.+++|.+..++-.. ...+|..||..++.++..++.......+.++..+.+.+.+ ++.
T Consensus 68 ~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l 147 (196)
T 4atg_A 68 ALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSE 147 (196)
T ss_dssp HHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCH
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCCh
Confidence 44444444433467899999999999887332 2289999999999999999987666678899999999865 445
Q ss_pred hhHHHHHHHHHHH
Q 003195 575 EGKDALLYAIGSI 587 (840)
Q Consensus 575 ~~Ke~vl~aL~~l 587 (840)
...-.++.+|.++
T Consensus 148 ~t~YGAi~GL~~l 160 (196)
T 4atg_A 148 DSQYGALYCLSIL 160 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555544
No 112
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=92.73 E-value=3.4 Score=41.54 Aligned_cols=111 Identities=16% Similarity=0.054 Sum_probs=69.6
Q ss_pred HHHHHHHhccccch--hhhhhHHhHHHHHHHHhhhhhchh-hhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHH
Q 003195 76 IYKFMDLANYQVSL--NSKRGAAFGFSKIAKQAGDALKPH-LRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTID 152 (840)
Q Consensus 76 v~~fm~la~~~~~w--~sr~gA~~~l~~I~~~~~~~l~~~-l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~ 152 (840)
+..++.+..+.. . .-+..|+..+..++.+..+.-... -...||.|.+.+..+++.||+.+..+...|..+.++...
T Consensus 10 i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 10 LERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp HHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 455666655442 2 333455566777765542211111 124689999999999999999999999988875332111
Q ss_pred HHHH-HHHHHHHHhhC-CCChhHHHHHHHHHHHHHcc
Q 003195 153 EHLD-LIFDDLLIQSG-SRLWRSREASCLSLADIIQG 187 (840)
Q Consensus 153 ~~~~-~Il~~Ll~~l~-~~~wrvR~aac~Al~~Ll~~ 187 (840)
...+ --+|.|+..+. ++++.+|+.++.||-+|...
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~ 125 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence 1111 14455555664 46899999999999998643
No 113
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=91.49 E-value=6.4 Score=40.10 Aligned_cols=110 Identities=11% Similarity=0.151 Sum_probs=74.0
Q ss_pred hhhhHHHHHHhhcCCCCHhHHHHHHHHHH-HhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcc----
Q 003195 113 HLRLLIPKLVRFQYDPDKNVQDAMAHIWK-SLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQG---- 187 (840)
Q Consensus 113 ~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~-~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~---- 187 (840)
++++++|.++.+..|++..||+-....+. +...+ .++...+++.|..-+.|++..|-+.+..+.+.+...
T Consensus 50 ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-----~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~ 124 (257)
T 3gs3_A 50 LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK-----VELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQY 124 (257)
T ss_dssp GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888899999999999866554 33332 235666666677777788888888777777666541
Q ss_pred -CCchhhhHHHHHHHHH-------HHHHhccccHHHHHHHHHHHHHHH
Q 003195 188 -RKFDQVGKHLRRIWTA-------AFRAMDDIKETVRTAGDKLCRSVT 227 (840)
Q Consensus 188 -~~~~~l~~~L~~l~~~-------l~~~ldD~~~~VR~aA~~~~~~l~ 227 (840)
...+...+...+.|.. +++..+.....||-.+.+.+..+.
T Consensus 125 i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 125 LCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 1111223344556655 445566778899999887777664
No 114
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=90.73 E-value=12 Score=38.18 Aligned_cols=118 Identities=10% Similarity=0.026 Sum_probs=81.4
Q ss_pred hHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhccccc
Q 003195 516 YLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDI 595 (840)
Q Consensus 516 yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~ 595 (840)
+++++++-+.....|++.++|+..+..|+..+..-. .+...+++.|..-+++.+..+-..++.+.+.+-...=..+
T Consensus 50 ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~----~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i 125 (257)
T 3gs3_A 50 LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV----ELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYL 125 (257)
T ss_dssp GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666778999999999999999986532 2567788888888888777776666666666543221111
Q ss_pred ccCCC---------CchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcC
Q 003195 596 SAEDP---------TTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFR 637 (840)
Q Consensus 596 ~~~~~---------~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~ 637 (840)
..... ..+..+...+.+.....|.++|.+|++.+..++-+..
T Consensus 126 ~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT 176 (257)
T 3gs3_A 126 CSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQS 176 (257)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTS
T ss_pred hcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhc
Confidence 11000 1355666666666666799999999999999887653
No 115
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=90.57 E-value=13 Score=36.02 Aligned_cols=131 Identities=10% Similarity=0.103 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHH
Q 003195 149 RTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRA-MDDIKETVRTAGDKLCRSVT 227 (840)
Q Consensus 149 ~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~-ldD~~~~VR~aA~~~~~~l~ 227 (840)
+....||+.|...++. +.|+. |+..|-...+..++-||+-+.+..-.+. ++|.. .. ....+.++++.
T Consensus 7 ~Elq~yf~~It~a~~~-------~~r~~---aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~-~L-~~lm~~~~ALl 74 (196)
T 4atg_A 7 KELQLYFDKILSMIKS-------DMKDI---AIECLEKESGLQQLVPYFIQHISELILKSFKEAE-VL-KTCIALYFSLI 74 (196)
T ss_dssp HHHHHHHHHHHHHHTS-------TTHHH---HHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHH-HH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-------HHHHH---HHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHH-HH-HHHHHHHHHHH
Confidence 4567788887776665 23544 4566666677778888887766554332 33211 11 11122222221
Q ss_pred HHHHHhhhccccccchHHhHHHhHHHHHHh----cccCCchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhccC
Q 003195 228 SLTIRLCDVTLTEISDARQSMDIVLPFLLA----EGILSKVDSISKASIGVVMKLVKGAGIAIRPHLSDLVSCMLESLSS 303 (840)
Q Consensus 228 ~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~----~gL~s~~~evr~~al~~L~~la~~~g~~l~p~lp~Lv~~Ll~~ls~ 303 (840)
+... -.-+.++..++|.++. +.+... .+|.+|...+..+++.+|..-..--|.++..+...+.+
T Consensus 75 -------~N~~---l~lepYlH~LipsvLtCll~k~l~~~--~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~d 142 (196)
T 4atg_A 75 -------KNKH---VFIDPYLHQILPSLLTCVIGKSIVDD--DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMD 142 (196)
T ss_dssp -------HCTT---CCCGGGHHHHHHHHHHHHHCTTCCCH--HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTC
T ss_pred -------cCCC---CChHHHHHHHHHHHHHHHHhcccCHH--HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcC
Confidence 2111 1234556666666554 333332 89999999999999999875444446667777776654
No 116
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=90.51 E-value=8.6 Score=41.55 Aligned_cols=108 Identities=14% Similarity=0.182 Sum_probs=73.5
Q ss_pred hhhhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHc------
Q 003195 113 HLRLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQ------ 186 (840)
Q Consensus 113 ~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~------ 186 (840)
.+++++|.++.+..|++..||+.+...+.-.... -.++...+++.|..-+.|++..|-+.+..+.+.+..
T Consensus 60 Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i 135 (386)
T 3o2t_A 60 LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWM 135 (386)
T ss_dssp GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999987766544422 123456666667777778888888777777777663
Q ss_pred --cCCchhhhHHHHHHHHH-------HHHHhccccHHHHHHHHHHHHHHH
Q 003195 187 --GRKFDQVGKHLRRIWTA-------AFRAMDDIKETVRTAGDKLCRSVT 227 (840)
Q Consensus 187 --~~~~~~l~~~L~~l~~~-------l~~~ldD~~~~VR~aA~~~~~~l~ 227 (840)
... ......+.|.. +++..+.....||-.+.+.+..+.
T Consensus 136 ~~~~~---~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 136 VKSRV---ISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHC-C---CCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred hcCCC---cchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 111 11123344544 445566778899999888777664
No 117
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=88.05 E-value=0.28 Score=50.02 Aligned_cols=40 Identities=25% Similarity=0.194 Sum_probs=23.5
Q ss_pred HHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHhccccHHHHHHHHH
Q 003195 163 LIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAMDDIKETVRTAGDK 221 (840)
Q Consensus 163 l~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~ldD~~~~VR~aA~~ 221 (840)
...+.|++|+||+++..+++ .+.+ ..|+|....||.+|..
T Consensus 200 ~~Ll~D~d~~VR~~aa~~l~------------------~~~L-~~L~D~~~~VR~aa~~ 239 (244)
T 1lrv_A 200 LELLHDPDWTVRLAAVEHAS------------------LEAL-RELDEPDPEVRLAIAG 239 (244)
T ss_dssp GGGGGCSSHHHHHHHHHHSC------------------HHHH-HHCCCCCHHHHHHHHC
T ss_pred HHHHcCCCHHHHHHHHHcCC------------------HHHH-HHccCCCHHHHHHHHH
Confidence 33346666666666665532 1222 3348888888887743
No 118
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=87.67 E-value=38 Score=37.43 Aligned_cols=117 Identities=12% Similarity=0.127 Sum_probs=81.8
Q ss_pred CchHhHHHHHHHHHHHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc-CC
Q 003195 372 LNTRVGVASFISLLVQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DD 450 (840)
Q Consensus 372 ~~~r~~a~~~l~~L~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~-~d 450 (840)
...|.-|+++|..+.. .|-...+.-+.+++... .|.+..||+.++..+..+++- +.+.++.+-|.+++. +|
T Consensus 42 ~k~K~LaaQ~I~kffk----~FP~l~~~Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~---~~i~kiaDvL~QlLqtdd 113 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFK----HFPELADSAINAQLDLC-EDEDVSIRRQAIKELPQFATG---ENLPRVADILTQLLQTDD 113 (507)
T ss_dssp HHHHHHHHHHHHHHGG----GCGGGHHHHHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT---TCHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHh----hChhhHHHHHHHHHHHH-hcccHHHHHHHHHhhHHHhhh---hhhhhHHHHHHHHHhccc
Confidence 3456678888765544 45567888899999998 789999999999998888765 668888888888886 45
Q ss_pred hhhhHHHHHHHHHHHhhchh-hhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHH
Q 003195 451 KNSQISCAILLKSYSSVASD-VLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEE 504 (840)
Q Consensus 451 ~~~r~~~~~~i~ai~~~~~~-~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~ 504 (840)
+..+.++-..+.++.+.-+. .+...+.++.+ .++.+|+-+.+...+
T Consensus 114 ~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~--------~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 114 SAEFNLVNNALLSIFKMDAKGTLGGLFSQILQ--------GEDIVRERAIKFLST 160 (507)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcChHHHHHHHHHHHcc--------cchHHHHHHHHHHHH
Confidence 66677777777777766542 34444444433 246677655544433
No 119
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=84.97 E-value=71 Score=38.02 Aligned_cols=201 Identities=9% Similarity=0.047 Sum_probs=116.8
Q ss_pred Ccccc-------HHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHh---hc--CC-hhhhHHHH
Q 003195 392 DIKPY-------TSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAAL---HI--DD-KNSQISCA 458 (840)
Q Consensus 392 ~~~p~-------~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~---~~--~d-~~~r~~~~ 458 (840)
++.|| .+.+...++..+.++.+..--..++..+.+.+.....+.+.+.++.+++. |. .+ -.+-...+
T Consensus 218 dw~~~gift~~q~~~iFt~~lr~l~~~~~~~~~~~~a~~IV~sl~~~~~~~~~~~L~~Li~~iesy~HPSN~G~Wt~~L~ 297 (799)
T 1vsy_4 218 EFGEFGIFTDDQMTFMFNRLQGHLRTDGQIHSYSRTVKPFVYAINGSKKDRFFEKLVSLAKAIETFIHPSNNGFWTKPNA 297 (799)
T ss_dssp CCCSSTTCCHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHTTCCTTSCTTTHHHHHHHHHHHHHHHSTTCCSTTHHHHH
T ss_pred chHhhCcccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHcCCCCchHHHHHHHHHHHHHhcccCCCCCCccHHHHH
Confidence 57888 88888888888843332222234555555554322122333344444332 21 12 22333334
Q ss_pred HHHHHHHhhc----------------------hhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhh
Q 003195 459 ILLKSYSSVA----------------------SDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLY 516 (840)
Q Consensus 459 ~~i~ai~~~~----------------------~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~y 516 (840)
..+..+.... .+.-..+.+.+.|+++.|++..+..+...+..+...++--.+..-...
T Consensus 298 ~Fl~~L~~~f~kR~~~Er~~~~~~~p~~~~Lt~~~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lV 377 (799)
T 1vsy_4 298 KFVHAFIKSYHGRVKYEEDICARGVTNGICLTSFCHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLI 377 (799)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTTTCCCSSSCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCchhhcCCHHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCcccee
Confidence 4444443321 112245667789999999999888877666555544433111112356
Q ss_pred HHHHHHHHHhhhcC---CCHHHHHHHHHHHHHHHHHh--CcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhc
Q 003195 517 LGEIVSLICEGIAS---SSWSSKRKSAKAICKLGEIL--GESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSC 591 (840)
Q Consensus 517 l~~Il~~l~~~L~d---~s~~vR~~Aa~~L~~La~~~--~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~ 591 (840)
+|.+++.+...|.. .....-.+|.+++..++..+ +..+.+|+..++..++.++.--..+-=-..+..+..++...
T Consensus 378 lP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~i 457 (799)
T 1vsy_4 378 YDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFI 457 (799)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhc
Confidence 78888888888877 34444445568888888654 33566788888888888887655443345677777776644
Q ss_pred c
Q 003195 592 H 592 (840)
Q Consensus 592 ~ 592 (840)
+
T Consensus 458 p 458 (799)
T 1vsy_4 458 P 458 (799)
T ss_dssp C
T ss_pred c
Confidence 3
No 120
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=84.86 E-value=19 Score=38.88 Aligned_cols=114 Identities=10% Similarity=-0.036 Sum_probs=79.9
Q ss_pred hHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhc----
Q 003195 516 YLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSC---- 591 (840)
Q Consensus 516 yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~---- 591 (840)
.++++++-+.....|++.++|+..+..|+..+..-. .++..+++.|..-+.+++..+-..++.+.+.+-...
T Consensus 60 Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~----el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i 135 (386)
T 3o2t_A 60 LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDI----ELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWM 135 (386)
T ss_dssp GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666778899999999999999987532 245777788777787777776666666666553211
Q ss_pred ---cc------ccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcC
Q 003195 592 ---HK------DISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFR 637 (840)
Q Consensus 592 ---~~------~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~ 637 (840)
+. ..| ..+..+...+.......|.++|..|++.+..++-+..
T Consensus 136 ~~~~~~~~~~e~~W----~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS 186 (386)
T 3o2t_A 136 VKSRVISELQEACW----DMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLS 186 (386)
T ss_dssp HHC-CCCHHHHHHH----HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTS
T ss_pred hcCCCcchhHHHHH----HHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhC
Confidence 11 223 2355666677776766799999999999999997764
No 121
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=82.90 E-value=9.3 Score=40.07 Aligned_cols=124 Identities=8% Similarity=0.185 Sum_probs=91.4
Q ss_pred HhhHHHHHHHHHhhhcCCCHHHHHHHH-HHHHHHHHHhCcchhhhHHHHHHHHHHhc----C---CCCchhHHHHHHHHH
Q 003195 514 QLYLGEIVSLICEGIASSSWSSKRKSA-KAICKLGEILGESLSNYHHVLLESIMKEV----P---GRLWEGKDALLYAIG 585 (840)
Q Consensus 514 ~~yl~~Il~~l~~~L~d~s~~vR~~Aa-~~L~~La~~~~~~l~~~l~~llp~L~~~l----~---~r~~~~Ke~vl~aL~ 585 (840)
..++|++++.++..-.+..++.|..-. .++..++.++++.+.+.++.++..+.++- . ...++.|..-+.-|.
T Consensus 68 ~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ 147 (321)
T 1w9c_A 68 ENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQ 147 (321)
T ss_dssp HHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHH
Confidence 455677776666555555566666444 66788889999989888888877765443 3 235788999999999
Q ss_pred HHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcC
Q 003195 586 SISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFR 637 (840)
Q Consensus 586 ~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~ 637 (840)
++...|-+.+..-.++....++..++=.+|.....+-..++.++-++++.+.
T Consensus 148 ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 148 AVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp HHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 9998886655432223456677777778989999999999999999998885
No 122
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=78.90 E-value=43 Score=31.34 Aligned_cols=129 Identities=18% Similarity=0.128 Sum_probs=83.9
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccC-
Q 003195 520 IVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAE- 598 (840)
Q Consensus 520 Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~- 598 (840)
|-.+....+.+++|..=. -|++++..-.. .-...+..|.++++.++..+.-..|.-|-.++++|+..+..+
T Consensus 20 IekATs~~~~~~Dw~~~l----eicD~I~~~~~----~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~ev 91 (163)
T 1x5b_A 20 VEKATNEYNTTEDWSLIM----DICDKVGSTPN----GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEV 91 (163)
T ss_dssp HHHHTCTTCSSCCHHHHH----HHHHHHHHSSS----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHcCCCCCCcCHHHHH----HHHHHHhCCCc----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333334445677887533 45566655322 235677889999998888777778888888899998755311
Q ss_pred -CCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCcchHHhHHHHHHhhccccccc
Q 003195 599 -DPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTALN 659 (840)
Q Consensus 599 -~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~~l~~~~~~~ 659 (840)
...|++.+++.+- +..++.+|..++.++......++++.=...+......+..+++..
T Consensus 92 as~~Fl~el~~l~~---~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G~~F 150 (163)
T 1x5b_A 92 CSRDFATEVRAVIK---NKAHPKVCEKLKSLMVEWSEEFQKDPQFSLISATIKSMKEEGITF 150 (163)
T ss_dssp TSHHHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHHTTTCSTTHHHHHHHHHHHTTTCCC
T ss_pred hhHHHHHHHHHHHc---cCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHcCCCC
Confidence 1135555555432 235789999999999999999987532344455556666665543
No 123
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=78.51 E-value=25 Score=31.98 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=77.6
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccC--C
Q 003195 522 SLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAE--D 599 (840)
Q Consensus 522 ~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~--~ 599 (840)
.+-...+.+++|.. ..-|++++..-+. .-...+..|.+++..++....-..|.-|-.++++|+..+..+ .
T Consensus 12 kAT~~~l~~~dw~~----ileicD~I~~~~~----~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas 83 (140)
T 3ldz_A 12 KATSEMNTAEDWGL----ILDICDKVGQSRT----GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCS 83 (140)
T ss_dssp HHTCTTSSSCCHHH----HHHHHHHHTTSTT----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSS
T ss_pred HHcCCCCCCcCHHH----HHHHHHHHHCCCc----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 33344556778864 2234555443221 236678889999988887777777777888889998755311 1
Q ss_pred CCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCcchHHhHHHHHHhhccc
Q 003195 600 PTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGS 655 (840)
Q Consensus 600 ~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~~l~~~ 655 (840)
..|+..+++.+ ++.++.+|..++.++......++++.=...+......+..+
T Consensus 84 ~~Fl~el~~l~----~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~ 135 (140)
T 3ldz_A 84 RDFASEVSNVL----NKGHPKVCEKLKALMVEWTDEFKNDPQLSLISAMIKNLKEQ 135 (140)
T ss_dssp HHHHHHHHHHH----HHSCHHHHHHHHHHHHHHHHHHTTCGGGTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh----ccCCHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHc
Confidence 13455554433 45788999999999999999998753233334444444433
No 124
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=77.11 E-value=24 Score=36.91 Aligned_cols=145 Identities=17% Similarity=0.241 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHhcc---CChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHH-HHHHHccCCchhhhHHHHHHHHHHHH
Q 003195 131 NVQDAMAHIWKSLVA---DPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLS-LADIIQGRKFDQVGKHLRRIWTAAFR 206 (840)
Q Consensus 131 ~VR~a~~~iw~~Lv~---d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~A-l~~Ll~~~~~~~l~~~L~~l~~~l~~ 206 (840)
.|++.+..+....++ |++.+.....++++..++..-.+..+..|++-... +..++... .+.+.++++.|+..+|.
T Consensus 44 ~vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl-~~~i~~~vp~Il~~VFe 122 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKL-GGHITAEIPQIFDAVFE 122 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHH-GGGGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHH
Confidence 466666666666664 33334555677777777776666566777654332 23333322 23577888888888876
Q ss_pred Hh----c---cccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHH
Q 003195 207 AM----D---DIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLV 279 (840)
Q Consensus 207 ~l----d---D~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la 279 (840)
+- + ..-|..|..=.++++++...|-..+- .-+.+.+..++-.++. |...+..+|...++.++..+.
T Consensus 123 ~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~------~lp~~~fklvidsiiW-a~kH~~r~V~e~gL~il~~ll 195 (321)
T 1w9c_A 123 CTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFL------AIPPTQFKLVLDSIIW-AFKHTMRNVADTGLQILFTLL 195 (321)
T ss_dssp HHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHH------HSCHHHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHH------cCCHHHHHHHHHHHHH-HcCCCCchHHHHHHHHHHHHH
Confidence 53 2 25588999888888887554432211 0123445555665553 677888899999999998888
Q ss_pred Hhhc
Q 003195 280 KGAG 283 (840)
Q Consensus 280 ~~~g 283 (840)
+...
T Consensus 196 ~n~~ 199 (321)
T 1w9c_A 196 QNVA 199 (321)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7764
No 125
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=76.23 E-value=81 Score=33.12 Aligned_cols=219 Identities=13% Similarity=0.094 Sum_probs=127.4
Q ss_pred cHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHH---HH------HHHHHHHHHhhcCChhhhHHHHHHHHHHHh
Q 003195 396 YTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPS---QA------QKLIEETAALHIDDKNSQISCAILLKSYSS 466 (840)
Q Consensus 396 ~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~---~~------~~li~~l~~~~~~d~~~r~~~~~~i~ai~~ 466 (840)
|...++..++..+ ..=..+.||.++..+..+++.-... .+ .+++..++..| ++++.-..+|..+....+
T Consensus 75 ~~~dll~~Li~~l-~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY-e~~diAl~~G~mLRecir 152 (341)
T 1upk_A 75 YNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY-ESPEIALNCGIMLRECIR 152 (341)
T ss_dssp HHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG-GSTTTHHHHHHHHHHHHT
T ss_pred HHhCHHHHHHHhc-ccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh-ccchhHhHHHHHHHHHHH
Confidence 6667788888887 4567889999999888888754321 11 12333444444 456666666666666554
Q ss_pred hchhhhhhh---HhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhh----HHhhHHHHHHHHHhhhcCCCHHHHHHH
Q 003195 467 VASDVLSGY---HAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVT----LQLYLGEIVSLICEGIASSSWSSKRKS 539 (840)
Q Consensus 467 ~~~~~f~~~---~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~----i~~yl~~Il~~l~~~L~d~s~~vR~~A 539 (840)
+-. +..+ -+.|-. +|.....+.=++..-+...+.++....... +..+.+.++....+.+.+++.-+||++
T Consensus 153 ~e~--la~~iL~~~~f~~-fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 153 HEP--LAKIILWSEQFYD-FFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp SHH--HHHHHHHSGGGGH-HHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred hHH--HHHHHhccHHHHH-HHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 311 1100 011111 122222233233322223333333332222 334456788888889999999999999
Q ss_pred HHHHHHHHHHhCc--chhhhH--HHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHh
Q 003195 540 AKAICKLGEILGE--SLSNYH--HVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACR 615 (840)
Q Consensus 540 a~~L~~La~~~~~--~l~~~l--~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 615 (840)
.+.||++...... -...|+ +.-+..+..-|++++-+.+-.+++.+--++.+-. -.+.|.+++.+
T Consensus 230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~---------K~~~I~~IL~~--- 297 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN---------KTQPILDILLK--- 297 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS---------CCHHHHHHHHH---
T ss_pred HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC---------CChHHHHHHHH---
Confidence 9999999975432 122232 4556677788889888888777877776664321 13566666654
Q ss_pred hcCHHHHHHHHHHHHHHHHHc
Q 003195 616 KKIKKYREAAFSCLEQVIKAF 636 (840)
Q Consensus 616 ~~~~~~R~~Al~~L~~l~~~~ 636 (840)
| |..-+..|..+...-
T Consensus 298 --N---r~kLl~fl~~f~~d~ 313 (341)
T 1upk_A 298 --N---QAKLIEFLSKFQNDR 313 (341)
T ss_dssp --T---HHHHHHHHHHTTTTC
T ss_pred --H---HHHHHHHHHhCCCCC
Confidence 2 455555666665444
No 126
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=70.76 E-value=1.2e+02 Score=32.70 Aligned_cols=254 Identities=13% Similarity=0.102 Sum_probs=139.7
Q ss_pred HhhHHH-HHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH-HHHHHHHHHhc-CCCCchhHHHHHHHHHHHHHh
Q 003195 514 QLYLGE-IVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH-HVLLESIMKEV-PGRLWEGKDALLYAIGSISTS 590 (840)
Q Consensus 514 ~~yl~~-Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l-~~llp~L~~~l-~~r~~~~Ke~vl~aL~~l~~~ 590 (840)
+.|++. ++--+...+.+++.+=|...-..|-.+-.+.. ...+++ ..+-..+.+-. .....+|=..+|+.+++++.|
T Consensus 123 k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~-~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinG 201 (403)
T 3fga_B 123 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFL-GLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIING 201 (403)
T ss_dssp TTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcc
Confidence 344432 44445667788888888765555544433321 122332 22223333332 344578888999999999999
Q ss_pred cccccccCCCCchHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHcCCcchHHhHH-HHHHhhcccccccCCCCCCCCC
Q 003195 591 CHKDISAEDPTTPFAIVDMVSSACRKKI-KKYREAAFSCLEQVIKAFRDPKFFNIIF-PLLFEMCGSTALNKSGQVPLPS 668 (840)
Q Consensus 591 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~R~~Al~~L~~l~~~~~~~~l~~~v~-~i~~~l~~~~~~~~~~~~~~~~ 668 (840)
+...+.+ .+..-+.+++...-+-++ ..|-+.-..|+..+++. +..+...+. .++. - -| .+
T Consensus 202 fa~PLke---ehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eK--Dp~L~~~vi~~LLk-~----WP--------~t 263 (403)
T 3fga_B 202 FALPLKE---EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTEPVVMALLK-Y----WP--------KT 263 (403)
T ss_dssp CCSSCCH---HHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHH--CGGGHHHHHHHHHH-T----CC--------SS
T ss_pred cCCCchH---HHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHh--CchhHHHHHHHHHH-h----CC--------CC
Confidence 8643332 233334455555544333 36777777888888864 334444333 3332 1 11 11
Q ss_pred CccchhhhccccCCchhHHHhhhhhhHHhhchhhHHHh-hhhhHHHHHhhcCCCCChHHHHH-------HHHhhhcCCCC
Q 003195 669 DASKEESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQ-EKNLVQLFTISLSPGFPWTELCS-------RLQKTLDDSAG 740 (840)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~ 740 (840)
+++++. .|++-+...+. .-+|.-|.+ ...|...+..|+++.+......+ .+.+++.
T Consensus 264 ns~Kev-----------lFL~Ele~iLe-~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~---- 327 (403)
T 3fga_B 264 HSPKEV-----------MFLNELEEILD-VIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLIS---- 327 (403)
T ss_dssp CHHHHH-----------HHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHH----
T ss_pred CcHHHH-----------HHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHH----
Confidence 221111 23333322222 234555666 45888889999866665544433 2222221
Q ss_pred CCCccchhHHHHHHHhhhhhhhhhhcccchhhhhhHhhhHHHHHHHHHhhhcccccccccchhhhhHHHHHhhhhHhHHH
Q 003195 741 TSPHAGISSLIQELFHTVSPKVVECISTVKIAQVHISASECLLEICKLFRQISSVYSSNIGIKGELVHQCEMEKNMEAKS 820 (840)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (840)
..-..++..+.|.+..+.++.=.+.||..|..++..+ .++++.+-++.++.|..++.++++.
T Consensus 328 --------~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l----------~e~d~~lF~~~~~~~~~~~~~~~~~ 389 (403)
T 3fga_B 328 --------DNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLF----------MEMNQKLFDDCTQQFKAEKLKEKLK 389 (403)
T ss_dssp --------TTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHH----------HTTSCCCCCTTHHHHHHHHHHHHHH
T ss_pred --------HhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH----------HHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 1245566666666655554555678887777766542 2456667888999998887655544
No 127
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=68.00 E-value=34 Score=42.35 Aligned_cols=180 Identities=11% Similarity=0.037 Sum_probs=96.7
Q ss_pred CCchHHHHHHHHhcccc---chhhhhhHHhHHHHHHHHhhhh--h--chhhhhHHHHHHhhcCCCCHhHHHHHHHHHHHh
Q 003195 71 GQPDLIYKFMDLANYQV---SLNSKRGAAFGFSKIAKQAGDA--L--KPHLRLLIPKLVRFQYDPDKNVQDAMAHIWKSL 143 (840)
Q Consensus 71 g~p~lv~~fm~la~~~~---~w~sr~gA~~~l~~I~~~~~~~--l--~~~l~~lvP~L~~~~~Dp~~~VR~a~~~iw~~L 143 (840)
++++++-.|..++.+.. .+.-|+.+..|+|+++.+.... . ...+..+...|.......+..-+......++-+
T Consensus 388 Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 388 ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 45578888888886532 2445678899999888654211 0 112233333333223333444444444445444
Q ss_pred ccCChHHHHHHHHHHHHHHHHhh----CCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHh--ccccHHHHH
Q 003195 144 VADPKRTIDEHLDLIFDDLLIQS----GSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAM--DDIKETVRT 217 (840)
Q Consensus 144 v~d~~~~i~~~~~~Il~~Ll~~l----~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~l--dD~~~~VR~ 217 (840)
-. + .. ++.+++ ++.+. .+..-|+|.+|+.||..+.... ++ .+-+.+++.. .+....||.
T Consensus 468 g~-p-~~----l~~l~~-~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-p~-------~v~~il~~i~~n~~e~~EvRi 532 (1056)
T 1lsh_A 468 GQ-P-NS----IKKIQR-FLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PR-------KVQEIVLPIFLNVAIKSELRI 532 (1056)
T ss_dssp TC-G-GG----HHHHHT-TSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HH-------HHHHHHHHHHHCTTSCHHHHH
T ss_pred CC-h-hH----HHHHHH-hhcCccccccccchHHHHHHHHHHHHhhhhc-hH-------HHHHHHHHHhcCCCCChHHHH
Confidence 32 1 11 222222 22221 2224599999999987765321 11 2233344445 346678999
Q ss_pred HHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHHhhcc
Q 003195 218 AGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVKGAGI 284 (840)
Q Consensus 218 aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~~~g~ 284 (840)
+|...+ ++.. | ....+..+.-.+. .+.+.+|+.+....|-.+++...+
T Consensus 533 aA~~~L-------m~t~-P-------~~~~l~~ia~~l~----~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 533 RSCIVF-------FESK-P-------SVALVSMVAVRLR----REPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHH-------HHTC-C-------CHHHHHHHHHHHT----TCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHH-------HHHC-c-------CHHHHHHHHHHHh----hCchHHHHHHHHHHHHHHHhcCCc
Confidence 985443 2222 1 2235566665542 336789999999999998876544
No 128
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=67.30 E-value=37 Score=31.09 Aligned_cols=96 Identities=10% Similarity=-0.032 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhh-HHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhccc
Q 003195 515 LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNY-HHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHK 593 (840)
Q Consensus 515 ~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~-l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~ 593 (840)
.+.+.|++.+.+.+.......|-.+.+.+.++++..|..+... -+.+.+.+......-..+.|..+.+-+...-+....
T Consensus 39 ~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~~~~ 118 (144)
T 1sz9_A 39 SCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNPNDT 118 (144)
T ss_dssp GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSGGGC
T ss_pred HHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCcccC
Confidence 4778899999999988889999999999999999998766543 333444444444444567777777655544332111
Q ss_pred ccccCCCCchHHHHHHHHHHH
Q 003195 594 DISAEDPTTPFAIVDMVSSAC 614 (840)
Q Consensus 594 ~~~~~~~~~~~~i~~~l~~~~ 614 (840)
+ ..-|-+.++..+-+.+
T Consensus 119 ~----~~vF~~~~l~~i~~~l 135 (144)
T 1sz9_A 119 G----LPLFEGSALEKIEQFL 135 (144)
T ss_dssp S----SCSSCHHHHHHHHHHH
T ss_pred C----CCCCCHHHHHHHHHHH
Confidence 1 1234455655555444
No 129
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=64.88 E-value=1.7e+02 Score=32.12 Aligned_cols=251 Identities=14% Similarity=0.111 Sum_probs=135.1
Q ss_pred HhhHH-HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH-HHHHHHHHHhc-CCCCchhHHHHHHHHHHHHHh
Q 003195 514 QLYLG-EIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH-HVLLESIMKEV-PGRLWEGKDALLYAIGSISTS 590 (840)
Q Consensus 514 ~~yl~-~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l-~~llp~L~~~l-~~r~~~~Ke~vl~aL~~l~~~ 590 (840)
+.|++ .++--++..+.+++.+=|..--..|-.+-.+.. ...+++ ..+-..+.+-. .....+|=..+|+-+++++.|
T Consensus 156 k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~-~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinG 234 (449)
T 2npp_B 156 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFL-GLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIING 234 (449)
T ss_dssp GGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCT-TTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSS
T ss_pred hhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhc
Confidence 34443 355556667778888777765555543333321 223333 22323333333 344578888999999999988
Q ss_pred cccccccCCCCchHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHcCCcchHHhHH-HHHHhhcccccccCCCCCCCCC
Q 003195 591 CHKDISAEDPTTPFAIVDMVSSACRKKI-KKYREAAFSCLEQVIKAFRDPKFFNIIF-PLLFEMCGSTALNKSGQVPLPS 668 (840)
Q Consensus 591 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~R~~Al~~L~~l~~~~~~~~l~~~v~-~i~~~l~~~~~~~~~~~~~~~~ 668 (840)
+.-.+.+ .+..-+.+++....+-+. ..|-+.-..|+..++.. +..+...+. .++. - -| .+
T Consensus 235 fa~PLKe---ehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK--Dp~L~~~vi~~LLk-~----WP--------~t 296 (449)
T 2npp_B 235 FALPLKE---EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTEPVVMALLK-Y----WP--------KT 296 (449)
T ss_dssp CCSSCCH---HHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHH--CGGGHHHHHHHHHH-T----CC--------SS
T ss_pred cCCCCcH---HHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhc--CcHhHHHHHHHHHH-h----CC--------CC
Confidence 7543332 233334445555544333 36777777888888764 334444333 3332 1 11 11
Q ss_pred CccchhhhccccCCchhHHHhhhhhhHHhhchhhHHHh-hhhhHHHHHhhcCCCCChHHHHH-------HHHhhhcCCCC
Q 003195 669 DASKEESADESVSAPLDKVLDCVSSCIHVAHVNDIIEQ-EKNLVQLFTISLSPGFPWTELCS-------RLQKTLDDSAG 740 (840)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~ 740 (840)
+++++. .|++-+...+- .-+|.-|.+ ...|...+..|+++.+......+ .+.+++.+
T Consensus 297 ns~Kev-----------lFL~eleeile-~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~--- 361 (449)
T 2npp_B 297 HSPKEV-----------MFLNELEEILD-VIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD--- 361 (449)
T ss_dssp CHHHHH-----------HHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHT---
T ss_pred CchHHH-----------HHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHh---
Confidence 221111 23333322222 235555666 45888889999866655443333 22222211
Q ss_pred CCCccchhHHHHHHHhhhhhhhhhhcccchhhhhhHhhhHHHHHHHHHhhhcccccccccchhhhhHHHHHhhhhHh
Q 003195 741 TSPHAGISSLIQELFHTVSPKVVECISTVKIAQVHISASECLLEICKLFRQISSVYSSNIGIKGELVHQCEMEKNME 817 (840)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (840)
.-..++..+.|.+..+.++.=.+.||..|..++--+ .++.+.+-++.++.|+.|+..+
T Consensus 362 ---------n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l----------~e~d~~lf~~c~~~~~~~~~~~ 419 (449)
T 2npp_B 362 ---------NAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLF----------MEMNQKLFDDCTQQFKAEKLKE 419 (449)
T ss_dssp ---------THHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHH----------HTTCHHHHHHHHHHHHHHHHHH
T ss_pred ---------chhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHH----------HHHCHHHHHHHHHHHHHHHHHH
Confidence 134455555555544444444577888887777632 2456667788999998877554
No 130
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=62.64 E-value=44 Score=33.11 Aligned_cols=124 Identities=17% Similarity=0.181 Sum_probs=81.6
Q ss_pred HhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccC--CCCc
Q 003195 525 CEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAE--DPTT 602 (840)
Q Consensus 525 ~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~--~~~~ 602 (840)
...+.+++|.. ..-|.+++..-.. .-...+..|.++++.++..+.-..|..|-.++++|+..+..+ ...|
T Consensus 18 ~~~~~~~dw~~----ileicD~I~~~~~----~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~f 89 (226)
T 3zyq_A 18 SQLLLETDWES----ILQICDLIRQGDT----QAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQT 89 (226)
T ss_dssp CTTCSSCCHHH----HHHHHHHHHTTSS----CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHH
T ss_pred CCCCCCcCHHH----HHHHHHHHhCCCc----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHH
Confidence 34456678864 3345666654222 236788889999998888888788888888899998754311 1235
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCcchHHhHHHHHHhhccccccc
Q 003195 603 PFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTALN 659 (840)
Q Consensus 603 ~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~~l~~~~~~~ 659 (840)
++.+.+.+- +..+..+|..++..+.....+++++.=...+..+...+..+++..
T Consensus 90 l~~l~~l~~---~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G~~F 143 (226)
T 3zyq_A 90 MEELKDLLK---RQVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVF 143 (226)
T ss_dssp HHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCCc
Confidence 555555431 235789999999999999999987532344555556665555443
No 131
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=59.73 E-value=52 Score=32.36 Aligned_cols=121 Identities=14% Similarity=0.113 Sum_probs=78.6
Q ss_pred HhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccC--CCCc
Q 003195 525 CEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAE--DPTT 602 (840)
Q Consensus 525 ~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~--~~~~ 602 (840)
...+.+++|..- .-|.+++..-.. .-...+..|.+++..++..+..-.|.-|-.++.+|+..+..+ ...+
T Consensus 15 ~~~~~~~dw~~~----leicd~i~~~~~----~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~f 86 (220)
T 1dvp_A 15 SHLRLEPDWPSI----LLICDEINQKDV----TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKEN 86 (220)
T ss_dssp CTTCSSCCHHHH----HHHHHHHHTTSS----CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHH
T ss_pred CCCCCCcCHHHH----HHHHHhhcCCCc----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHH
Confidence 344567888753 346666653322 235677888999998888877777888888899998754211 1235
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHcCCcchHHhHHHHHHhhcccc
Q 003195 603 PFAIVDMVSSACRKKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGST 656 (840)
Q Consensus 603 ~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~~l~~~~ 656 (840)
++.+++.+.+ ..+..+|..++..+.....+++++.-...+......+...+
T Consensus 87 l~~l~~l~~~---~~~~~Vk~kil~li~~W~~~f~~~~~~~~i~~~y~~Lk~~G 137 (220)
T 1dvp_A 87 CEMFSSFLES---TPHENVRQKMLELVQTWAYAFRSSDKYQAIKDTMTILKAKG 137 (220)
T ss_dssp HHHHHHHHHH---CSCHHHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC---CCcHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcC
Confidence 6666554422 35789999999999999999987432223344444444443
No 132
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=54.40 E-value=2.1e+02 Score=29.96 Aligned_cols=133 Identities=11% Similarity=0.130 Sum_probs=93.9
Q ss_pred HHhHHHHHHHHhh--hhhchhh--hhHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChH----HHHHHHHHHHHHHHHhh
Q 003195 95 AAFGFSKIAKQAG--DALKPHL--RLLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKR----TIDEHLDLIFDDLLIQS 166 (840)
Q Consensus 95 A~~~l~~I~~~~~--~~l~~~l--~~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~----~i~~~~~~Il~~Ll~~l 166 (840)
.|.--|.|+..|- +.+..++ ...+-++|.|..-|+=.|..-+-..++-+...-+. .+..+++.+....-..+
T Consensus 139 iAl~~G~mLRecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll 218 (341)
T 1upk_A 139 IALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL 218 (341)
T ss_dssp THHHHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred hHhHHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3444577777762 3333332 13455788999999999988877777766554333 45667788888888888
Q ss_pred CCCChhHHHHHHHHHHHHHccCCch-hhhHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 003195 167 GSRLWRSREASCLSLADIIQGRKFD-QVGKHL--RRIWTAAFRAMDDIKETVRTAGDKLCRSVT 227 (840)
Q Consensus 167 ~~~~wrvR~aac~Al~~Ll~~~~~~-~l~~~L--~~l~~~l~~~ldD~~~~VR~aA~~~~~~l~ 227 (840)
.+.++-+|.-|..-|++++-.++-- .+..|+ ++-+..+...|.|....++-.|....+-++
T Consensus 219 ~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFV 282 (341)
T 1upk_A 219 HSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFV 282 (341)
T ss_dssp TCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeee
Confidence 9999999999999999999765422 233332 234445566689999999999988888663
No 133
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=53.91 E-value=57 Score=29.59 Aligned_cols=77 Identities=4% Similarity=-0.109 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhccc
Q 003195 517 LGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH--HVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHK 593 (840)
Q Consensus 517 l~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l--~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~ 593 (840)
..+.+..+.+.|.+.+..+...|...|..+++.+|..|...+ ..++..|.+.++.....+|+.+++.+......++.
T Consensus 40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 345677888888999999999999999999999998765321 23333333333334568999999988888776653
No 134
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=53.51 E-value=96 Score=31.25 Aligned_cols=117 Identities=18% Similarity=0.189 Sum_probs=71.9
Q ss_pred HHHHHHHhhhcCCchHHHHHHHHhccccchhhhhhHHhHH-HHHHHHhh---hhhchhhh-hHHHHHHhhcC-CCCHhHH
Q 003195 60 YKELCNLANEMGQPDLIYKFMDLANYQVSLNSKRGAAFGF-SKIAKQAG---DALKPHLR-LLIPKLVRFQY-DPDKNVQ 133 (840)
Q Consensus 60 yk~l~~lA~~~g~p~lv~~fm~la~~~~~w~sr~gA~~~l-~~I~~~~~---~~l~~~l~-~lvP~L~~~~~-Dp~~~VR 133 (840)
..||.++---+..|.+-.. -..|--.+.++ ..++++.. ..++.+++ -++|.|=..-. .|...+|
T Consensus 50 LQEIisiYp~lspp~Lt~~----------~SnRVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LR 119 (268)
T 2fv2_A 50 LQEIVNIYPSINPPTLTAH----------QSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLR 119 (268)
T ss_dssp HHHHHHTGGGBTTBCCCHH----------HHHHHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHH
T ss_pred HHHHHHHcccCCCcccCHH----------HHhHHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhh
Confidence 4566666666655532111 12333455666 77777551 24444544 57777654333 3567899
Q ss_pred HHHHHHHHHhccCChHHHHHHH--HHHHHHHHHhhCCCChhHHHHHHHHHHHHHc
Q 003195 134 DAMAHIWKSLVADPKRTIDEHL--DLIFDDLLIQSGSRLWRSREASCLSLADIIQ 186 (840)
Q Consensus 134 ~a~~~iw~~Lv~d~~~~i~~~~--~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~ 186 (840)
=+...++++|++.....+-.++ .+|+|-.+..|...+--.+..|..-+.-++.
T Consensus 120 LtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~ 174 (268)
T 2fv2_A 120 LTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILL 174 (268)
T ss_dssp HHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhc
Confidence 9999999999964333343343 4588989998877776777777766655553
No 135
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=53.41 E-value=2.9e+02 Score=34.66 Aligned_cols=163 Identities=9% Similarity=0.003 Sum_probs=92.5
Q ss_pred HHHhccCccccHHHHHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhc-CChhhhHHHHHHHHHH
Q 003195 386 VQKIGMDIKPYTSMLLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHI-DDKNSQISCAILLKSY 464 (840)
Q Consensus 386 ~~~~~~~~~p~~~~lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~-~d~~~r~~~~~~i~ai 464 (840)
...+...+..|.+.++...-..+ ..+++.|+.-+...-..+.+..+.-.-+.++..+.+... +....-.++..++..+
T Consensus 387 f~~h~~vL~~~f~siL~La~~Ll-~S~~~~v~~Fg~~lY~~lF~~fd~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L 465 (1323)
T 3s4w_B 387 FSTHYLVLKDICPSILLLAQTLF-HSQDQRIILFGSLLYKYAFKFFDTYCQQEVVGALVTHVCSGTEAEVDTALDVLLEL 465 (1323)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHH-TSSSHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Confidence 34455667888888888877777 567888988877777777777654323444444443322 3333344566777888
Q ss_pred HhhchhhhhhhHhhHhHHHHHhhcC-CchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHH
Q 003195 465 SSVASDVLSGYHAVIVPVIFISRFE-DDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAI 543 (840)
Q Consensus 465 ~~~~~~~f~~~~~~llP~l~~~~~d-~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L 543 (840)
+...+..+.++...+.++ +-...+ ....+|..|.=+-.-..+....+-...-+++.=.+.+.+.+++.+.|+.+.-+-
T Consensus 466 ~~~~~~~l~~~a~~l~gi-LD~l~~l~~~QiRklf~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGa 544 (1323)
T 3s4w_B 466 IVLNASAMRLNAAFVKGI-LDYLENMSPQQIRKIFCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGA 544 (1323)
T ss_dssp HHHCHHHHHHTHHHHHGG-GGGGGGCCHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HhcCHHHHhHHHHHHHHH-HHhhcCCCHHHHHHHHHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhhhhHHHH
Confidence 877777776665533332 222222 445677765322111111000000012355555667788888888888766554
Q ss_pred HHHHHHh
Q 003195 544 CKLGEIL 550 (840)
Q Consensus 544 ~~La~~~ 550 (840)
-.++...
T Consensus 545 v~~v~~~ 551 (1323)
T 3s4w_B 545 VTMAGIM 551 (1323)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 4444444
No 136
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=52.23 E-value=62 Score=30.20 Aligned_cols=75 Identities=5% Similarity=-0.077 Sum_probs=53.8
Q ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHHHHHhcCCC-CchhHHHHHHHHHHHHHhcc
Q 003195 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH--HVLLESIMKEVPGR-LWEGKDALLYAIGSISTSCH 592 (840)
Q Consensus 518 ~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l--~~llp~L~~~l~~r-~~~~Ke~vl~aL~~l~~~~~ 592 (840)
.+.+..+.+.|.+.+..+...|...|..+++.+|..|...+ ..++..|.+.+..+ ...+|+.+++-+......++
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 45667778888999999999999999999999998765322 23444444444332 36789999987777766554
No 137
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=50.83 E-value=21 Score=44.15 Aligned_cols=105 Identities=11% Similarity=0.056 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhCcc----hhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHH
Q 003195 531 SSWSSKRKSAKAICKLGEILGES----LSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAI 606 (840)
Q Consensus 531 ~s~~vR~~Aa~~L~~La~~~~~~----l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i 606 (840)
.++.+|+++..++|.|+..+-.. -.+.++.+...|.+.+...+.+.+-..|+||+.+.. +.+
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--------------p~~ 472 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--------------PNS 472 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--------------GGG
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--------------hhH
Confidence 57889999999999999764211 123356677777777765555566667777766531 122
Q ss_pred HHHHHHHHh-------hcCHHHHHHHHHHHHHHHHHcCCcchHHhHHHHHH
Q 003195 607 VDMVSSACR-------KKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLF 650 (840)
Q Consensus 607 ~~~l~~~~~-------~~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~ 650 (840)
++.+.+.+. .....+|.+|+.+|.++....|. .+.+++.++..
T Consensus 473 l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~-~v~~il~~i~~ 522 (1056)
T 1lsh_A 473 IKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR-KVQEIVLPIFL 522 (1056)
T ss_dssp HHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH-HHHHHHHHHHH
T ss_pred HHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH-HHHHHHHHHhc
Confidence 333333221 12356777888887777643221 34445555554
No 138
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=50.69 E-value=68 Score=29.16 Aligned_cols=73 Identities=7% Similarity=0.062 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHh-----c------cccHHHHHHHHH
Q 003195 153 EHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKHLRRIWTAAFRAM-----D------DIKETVRTAGDK 221 (840)
Q Consensus 153 ~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~L~~l~~~l~~~l-----d------D~~~~VR~aA~~ 221 (840)
+.+..||+.|++.+++++|++..-|...|.-|+..-+ +.+...+..=...+-.+. + |....||.+|..
T Consensus 45 ~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs-~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkE 123 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSG-SEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHE 123 (140)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCC-HHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHH
Confidence 3568899999999999999988888777777765332 333333322222211111 2 333678888876
Q ss_pred HHHHH
Q 003195 222 LCRSV 226 (840)
Q Consensus 222 ~~~~l 226 (840)
++..+
T Consensus 124 l~~ll 128 (140)
T 1vdy_A 124 TISAI 128 (140)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
No 139
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=50.12 E-value=74 Score=29.19 Aligned_cols=75 Identities=13% Similarity=0.073 Sum_probs=57.9
Q ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhh--HHHHHHHHHHhcCCC------CchhHHHHHHHHHHHHH
Q 003195 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNY--HHVLLESIMKEVPGR------LWEGKDALLYAIGSIST 589 (840)
Q Consensus 518 ~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~--l~~llp~L~~~l~~r------~~~~Ke~vl~aL~~l~~ 589 (840)
.+.+..+.+-+.+.+..+...|...|..+++.+|..|... -..++..|.+.+..+ ...+|+.+++.+.....
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 4567778888899999999999999999999999877432 245566677766542 35789999988888887
Q ss_pred hcc
Q 003195 590 SCH 592 (840)
Q Consensus 590 ~~~ 592 (840)
.++
T Consensus 127 ~f~ 129 (149)
T 3g2s_A 127 GLP 129 (149)
T ss_dssp HCT
T ss_pred HhC
Confidence 654
No 140
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=49.71 E-value=4.8e+02 Score=32.70 Aligned_cols=226 Identities=9% Similarity=0.041 Sum_probs=116.3
Q ss_pred HHHHHHHhHhhcCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhhcCChhhhHHH--------------HHHHHHHH
Q 003195 400 LLRLLFPVVKEEKSAAAKRAFASACASVLKYATPSQAQKLIEETAALHIDDKNSQISC--------------AILLKSYS 465 (840)
Q Consensus 400 lL~~Ll~~l~~d~~~~Vr~~a~~Alg~l~~~~~~~~~~~li~~l~~~~~~d~~~r~~~--------------~~~i~ai~ 465 (840)
++..+-.++. .+..+.++...++..+-.......++-++ |.-.|..+...|..+ .+.+....
T Consensus 312 ild~lks~l~--~~k~i~eAwlK~I~~~~~~~~hk~~Dl~v--Llii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f 387 (1323)
T 3s4w_B 312 VFDVIKSAIR--YEKTISEAWFKAIERIESAAEHKSLDVVM--LLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAF 387 (1323)
T ss_dssp HHHHHHHHHH--HCHHHHHHHHHHHHHGGGSTTCCTHHHHH--HHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred HHHHHHHHHh--cChHHHHHHHHHHhCCCcccccchhHHHH--HHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 6666666662 46778888888887765433322222211 111121112111111 12222222
Q ss_pred hhchhhhhhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHH
Q 003195 466 SVASDVLSGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICK 545 (840)
Q Consensus 466 ~~~~~~f~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~ 545 (840)
......++.|++.++-+.-...+..++.|++.....+..+-.... + -|-.+++..+...+.+.+..=-.+|...|..
T Consensus 388 ~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd-~--~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~ 464 (1323)
T 3s4w_B 388 STHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFD-T--YCQQEVVGALVTHVCSGTEAEVDTALDVLLE 464 (1323)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSC-H--HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc-c--hhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Confidence 333456677777777665555666777787654444433222221 1 2346677776666555443333347778888
Q ss_pred HHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHH
Q 003195 546 LGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAA 625 (840)
Q Consensus 546 La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~A 625 (840)
++...+..+.+|.. ++..+...+..=+...=..++.-|..++-.-+.. ......+++-=++.+++...+.+|++..
T Consensus 465 L~~~~~~~l~~~a~-~l~giLD~l~~l~~~QiRklf~iL~~laf~~~~~---~~~~i~ddl~ivIRKQLs~~~~~~KriG 540 (1323)
T 3s4w_B 465 LIVLNASAMRLNAA-FVKGILDYLENMSPQQIRKIFCILSTLAFSQQPG---TSNHIQDDMHLVIRKQLSSTVFKYKLIG 540 (1323)
T ss_dssp HHHHCHHHHHHTHH-HHHGGGGGGGGCCHHHHHHHHHHHHHHHHHHCSS---CCCHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHhcCHHHHhHHHH-HHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCC---cchhhHHhHHHHHHHHHhCCchhhhhhh
Confidence 88776666665433 3333334444333322233455555554322111 0112335555566678888888888877
Q ss_pred HHHHHHHHHHc
Q 003195 626 FSCLEQVIKAF 636 (840)
Q Consensus 626 l~~L~~l~~~~ 636 (840)
+-..-.+++.+
T Consensus 541 IIGav~~v~~~ 551 (1323)
T 3s4w_B 541 IIGAVTMAGIM 551 (1323)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 66555566555
No 141
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=49.71 E-value=81 Score=28.89 Aligned_cols=75 Identities=12% Similarity=0.014 Sum_probs=58.4
Q ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHHHHHhcCCC------CchhHHHHHHHHHHHHH
Q 003195 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH--HVLLESIMKEVPGR------LWEGKDALLYAIGSIST 589 (840)
Q Consensus 518 ~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l--~~llp~L~~~l~~r------~~~~Ke~vl~aL~~l~~ 589 (840)
.+.+..+.+-|++.+..+...|...|..+++.+|..|...+ ..++..|.+.+..+ ...+|+.+++-+.....
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45667778888999999999999999999999998775432 56777777777642 45789999988887776
Q ss_pred hcc
Q 003195 590 SCH 592 (840)
Q Consensus 590 ~~~ 592 (840)
.++
T Consensus 117 ~f~ 119 (148)
T 1mhq_A 117 WFP 119 (148)
T ss_dssp HCT
T ss_pred HcC
Confidence 654
No 142
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=45.16 E-value=47 Score=30.84 Aligned_cols=116 Identities=10% Similarity=0.153 Sum_probs=71.3
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHHHHHhcccccccC--CCCch
Q 003195 527 GIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVP-GRLWEGKDALLYAIGSISTSCHKDISAE--DPTTP 603 (840)
Q Consensus 527 ~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~-~r~~~~Ke~vl~aL~~l~~~~~~~~~~~--~~~~~ 603 (840)
.+.+++|..= .-|++++..-.. .-...+..|.++++ .++..+.--+|..|-.++++|+..+..+ ...++
T Consensus 28 ~l~~~Dw~~~----leicD~I~~~~~----~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl 99 (157)
T 1elk_A 28 SLQSEDWALN----MEICDIINETEE----GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFV 99 (157)
T ss_dssp TCSSCCHHHH----HHHHHHHHHSSS----HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHH
T ss_pred CCCCcCHHHH----HHHHHHHhCCCc----cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHH
Confidence 4456788653 345566654322 23667888999997 4677777777888888899998755321 11234
Q ss_pred HHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHcCCcchHHhHHHHHHhhc
Q 003195 604 FAIVDMVSSACRK---KIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMC 653 (840)
Q Consensus 604 ~~i~~~l~~~~~~---~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~~l~ 653 (840)
+.+ +++.+.. ....+|+.++.++......++++.-...+......+.
T Consensus 100 ~e~---Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~~p~l~~i~~~Y~~Lk 149 (157)
T 1elk_A 100 ESV---LVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPDLTGVVTIYEDLR 149 (157)
T ss_dssp HHH---THHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHH---HHHHhccCCCCcHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHH
Confidence 441 3333322 2458999999999999999986422223333444443
No 143
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=44.93 E-value=67 Score=31.48 Aligned_cols=75 Identities=12% Similarity=0.013 Sum_probs=53.6
Q ss_pred hHHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhH
Q 003195 116 LLIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGK 195 (840)
Q Consensus 116 ~lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~ 195 (840)
++.+.++.+..|++.-+||++.-.. + ..- -+.+.+.+++-+-..+.|+++=||.+..++|.++... .++.+.+
T Consensus 124 ~~~~~i~~W~~s~~~w~rR~ai~~~--l-~~~---~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~-~~~~v~~ 196 (220)
T 2b6c_A 124 ELPTIFALFYGAENFWNRRVALNLQ--L-MLK---EKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT-NPQWVEE 196 (220)
T ss_dssp GHHHHHHHHTTCSSHHHHHHHHHTT--T-TCG---GGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT-CHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH--H-HHH---HCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh-CHHHHHH
Confidence 4667888999999999999985432 2 221 1234566666566688999999999999999997544 3344555
Q ss_pred HH
Q 003195 196 HL 197 (840)
Q Consensus 196 ~L 197 (840)
|+
T Consensus 197 fl 198 (220)
T 2b6c_A 197 LM 198 (220)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 144
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=42.49 E-value=88 Score=29.42 Aligned_cols=75 Identities=15% Similarity=0.058 Sum_probs=56.3
Q ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHHHHHhcCCC------CchhHHHHHHHHHHHHH
Q 003195 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH--HVLLESIMKEVPGR------LWEGKDALLYAIGSIST 589 (840)
Q Consensus 518 ~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l--~~llp~L~~~l~~r------~~~~Ke~vl~aL~~l~~ 589 (840)
.+.+..+.+-+++.+..+...|...|..+++.+|..|...+ ..++..|.+.+..+ ...+|+.+++.+.....
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45677788888999999999999999999999998765322 34555566665432 36789999988888776
Q ss_pred hcc
Q 003195 590 SCH 592 (840)
Q Consensus 590 ~~~ 592 (840)
.++
T Consensus 129 ~f~ 131 (171)
T 1juq_A 129 ALP 131 (171)
T ss_dssp HCT
T ss_pred HcC
Confidence 654
No 145
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=39.93 E-value=93 Score=30.73 Aligned_cols=75 Identities=12% Similarity=0.017 Sum_probs=52.3
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHccCCchhhhHH
Q 003195 117 LIPKLVRFQYDPDKNVQDAMAHIWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADIIQGRKFDQVGKH 196 (840)
Q Consensus 117 lvP~L~~~~~Dp~~~VR~a~~~iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll~~~~~~~l~~~ 196 (840)
..+.++.+..|+++-+||++.-. +.... .+..+..+++.+...+.|+++-||.+..++|.++... .++.+.+|
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~---~l~~~---~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-~p~~v~~f 204 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILF---QLKYK---QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT-NPDVVWEY 204 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHT---TTTCG---GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-CHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHH---HHHHH---hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-CHHHHHHH
Confidence 56677888899999999998543 22211 1223445566666788999999999999999997543 34455555
Q ss_pred HH
Q 003195 197 LR 198 (840)
Q Consensus 197 L~ 198 (840)
+.
T Consensus 205 l~ 206 (232)
T 3jxy_A 205 VQ 206 (232)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 146
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=36.04 E-value=2.5e+02 Score=25.50 Aligned_cols=121 Identities=9% Similarity=0.037 Sum_probs=78.0
Q ss_pred HhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchH
Q 003195 525 CEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPF 604 (840)
Q Consensus 525 ~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~ 604 (840)
...+.+++|.. ..-|++++..-+. .-...+..|.++++.++..+---+|..|-.++++|+..+..+-. -.
T Consensus 11 s~~l~~~dw~~----~leicD~I~~~~~----~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~eva--s~ 80 (148)
T 1mhq_A 11 DPSMSEQDWSA----IQNFCEQVNTDPN----GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVA--KF 80 (148)
T ss_dssp CTTCSSCCHHH----HHHHHHHHHHSSH----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHT--SH
T ss_pred CCCCCCcCHHH----HHHHHHHHHcCCc----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHh--hH
Confidence 34456678854 3355566554332 23567788999999888888778888888889999875531100 12
Q ss_pred HHHHHHHHHHhh------cCHHHHHHHHHHHHHHHHHcCCcchHHhHHHHHHhhcccccc
Q 003195 605 AIVDMVSSACRK------KIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTAL 658 (840)
Q Consensus 605 ~i~~~l~~~~~~------~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~~l~~~~~~ 658 (840)
.++..+++.++. .+..+|..++.++......++++. .+......+...++.
T Consensus 81 ~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p---~i~~~y~~Lk~~G~~ 137 (148)
T 1mhq_A 81 RFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPEDI---KIRDAYQMLKKQGII 137 (148)
T ss_dssp HHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHcCCC
Confidence 334444444432 367999999999999999998742 134445555555443
No 147
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=34.65 E-value=66 Score=29.22 Aligned_cols=64 Identities=13% Similarity=-0.000 Sum_probs=39.9
Q ss_pred HhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhc
Q 003195 525 CEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSC 591 (840)
Q Consensus 525 ~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~ 591 (840)
.+..++..|..= ...+.+++...-..-..+...|++.|.++|.++.+.+|-.+|..|--++...
T Consensus 17 ~~ATs~d~~~~p---gylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~G 80 (140)
T 1vdy_A 17 DAVTSDEDKVAP---VYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKS 80 (140)
T ss_dssp HHTTCSCSSCCC---HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTS
T ss_pred HHHhcCCCCCCc---HHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhC
Confidence 445555555332 2445555554322111245889999999999999988877777776666433
No 148
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=34.19 E-value=82 Score=31.26 Aligned_cols=69 Identities=7% Similarity=-0.069 Sum_probs=52.0
Q ss_pred hhHHHHHHhhcCCCCHhHHHHHHH----HHHHhccCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 003195 115 RLLIPKLVRFQYDPDKNVQDAMAH----IWKSLVADPKRTIDEHLDLIFDDLLIQSGSRLWRSREASCLSLADII 185 (840)
Q Consensus 115 ~~lvP~L~~~~~Dp~~~VR~a~~~----iw~~Lv~d~~~~i~~~~~~Il~~Ll~~l~~~~wrvR~aac~Al~~Ll 185 (840)
+...+.++.+..|++.-+|+++.. ....+. .+..-+.+++.+++.+...+.|+++.||.+..++|.++.
T Consensus 107 ~~~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~--~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~g 179 (235)
T 1t06_A 107 NIAQDVADKWIASGDELKMSAGWSCYCWLLGNRK--DNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVA 179 (235)
T ss_dssp SSHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSC--GGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhcc--ccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Confidence 446777888899999999999865 222222 112235578888888888999999999999999998764
No 149
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=32.87 E-value=1.6e+02 Score=28.95 Aligned_cols=75 Identities=9% Similarity=0.061 Sum_probs=53.2
Q ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHHHHHhcCC-CCchhHHHHHHHHHHHHHhcc
Q 003195 518 GEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSNYH--HVLLESIMKEVPG-RLWEGKDALLYAIGSISTSCH 592 (840)
Q Consensus 518 ~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l--~~llp~L~~~l~~-r~~~~Ke~vl~aL~~l~~~~~ 592 (840)
.+.+..+.+-|.+.+..+...|...|..+++..|..|...+ ..++..|.+.++. ....+|+.+++.+......++
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 121 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFR 121 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 45677888889999999999999999999999998654321 2233333333322 235789999988888877664
No 150
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=32.85 E-value=12 Score=25.41 Aligned_cols=19 Identities=42% Similarity=0.660 Sum_probs=16.4
Q ss_pred eeecCChhhHHHHHHHHHH
Q 003195 4 VYELGDASMKQNLVDALVT 22 (840)
Q Consensus 4 vy~~~~~~~~~~lv~~l~~ 22 (840)
+|+-||++.|..+.++.++
T Consensus 15 iY~~gddd~kram~KS~~e 33 (35)
T 2jtt_C 15 IYEDGDDDMKRTINKAWVE 33 (35)
T ss_dssp HHTTCCSSHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHhh
Confidence 6999999999999887654
No 151
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=32.38 E-value=2.5e+02 Score=25.71 Aligned_cols=75 Identities=11% Similarity=0.095 Sum_probs=54.9
Q ss_pred HHHHHHHHhhhc-CCCHHHHHHHHHHHHHHHHHhCcchhhhH--HHHHHH-HHHhcCCC---CchhHHHHHHHHHHHHHh
Q 003195 518 GEIVSLICEGIA-SSSWSSKRKSAKAICKLGEILGESLSNYH--HVLLES-IMKEVPGR---LWEGKDALLYAIGSISTS 590 (840)
Q Consensus 518 ~~Il~~l~~~L~-d~s~~vR~~Aa~~L~~La~~~~~~l~~~l--~~llp~-L~~~l~~r---~~~~Ke~vl~aL~~l~~~ 590 (840)
.+.+..+.+-|+ ..+..+...|...|..+++.+|..|...+ ..++.. |++.+..+ ...+|+.+++-+......
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 456677778887 47889999999999999999998775432 345555 56666433 246899999888887776
Q ss_pred cc
Q 003195 591 CH 592 (840)
Q Consensus 591 ~~ 592 (840)
++
T Consensus 132 f~ 133 (157)
T 1elk_A 132 FR 133 (157)
T ss_dssp HT
T ss_pred cC
Confidence 54
No 152
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=29.42 E-value=2.9e+02 Score=26.79 Aligned_cols=76 Identities=3% Similarity=-0.118 Sum_probs=49.4
Q ss_pred hhhHhhHhHHHHHhhcCCchHHHHHHHHHHHHhcCCChhhHHhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCc
Q 003195 473 SGYHAVIVPVIFISRFEDDKYVSDLFEELWEENTSGDRVTLQLYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE 552 (840)
Q Consensus 473 ~~~~~~llP~l~~~~~d~d~~vr~~~~~i~~~~~~~~~~~i~~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~ 552 (840)
..+-..+.+.+..-..+++..+|....... .+-. -..+.+.+++++...+.|+++=||.+.+=+|.++.+.-++
T Consensus 119 ~~~~~~~~~~i~~W~~s~~~w~rR~ai~~~---l~~~---~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~ 192 (220)
T 2b6c_A 119 ALHLTELPTIFALFYGAENFWNRRVALNLQ---LMLK---EKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQ 192 (220)
T ss_dssp HHSGGGHHHHHHHHTTCSSHHHHHHHHHTT---TTCG---GGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHH
T ss_pred HHChHHHHHHHHHHHcCCCHHHHHHHHHHH---HHHH---HCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHH
Confidence 333344556666666777777766533211 1111 1346677888888899999999999988888888776444
Q ss_pred ch
Q 003195 553 SL 554 (840)
Q Consensus 553 ~l 554 (840)
.+
T Consensus 193 ~v 194 (220)
T 2b6c_A 193 WV 194 (220)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 153
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=27.37 E-value=1.8e+02 Score=26.33 Aligned_cols=92 Identities=8% Similarity=-0.025 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCc-------chhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 003195 515 LYLGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGE-------SLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSI 587 (840)
Q Consensus 515 ~yl~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~-------~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l 587 (840)
.+.+.|+..+.+.+.....+-|-.+.+.+.++++..+. .+.+.+...++.+....-....+.|..+..-+...
T Consensus 38 ~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~~~~~~r~kl~rLl~iW 117 (145)
T 3d9j_A 38 KFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLW 117 (145)
T ss_dssp GGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 46677888887777766777888999999999987665 34433322222222222223366776666544333
Q ss_pred HHhcccccccCCCCchHHHHHHHHHHHh
Q 003195 588 STSCHKDISAEDPTTPFAIVDMVSSACR 615 (840)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 615 (840)
-+ ..-|-+.++..+...+.
T Consensus 118 ~~---------r~vF~~~~l~~l~~~l~ 136 (145)
T 3d9j_A 118 QK---------NNVFKSEIIQPLLDMAA 136 (145)
T ss_dssp HH---------TTSSCHHHHHHHHHHHH
T ss_pred cC---------CCCCCHHHHHHHHHHhc
Confidence 22 12344566665555543
No 154
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=26.21 E-value=75 Score=29.28 Aligned_cols=102 Identities=9% Similarity=0.127 Sum_probs=62.3
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCC-CCchhHHHHHHHHHHHHHhcccccccC--CCCch
Q 003195 527 GIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPG-RLWEGKDALLYAIGSISTSCHKDISAE--DPTTP 603 (840)
Q Consensus 527 ~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~-r~~~~Ke~vl~aL~~l~~~~~~~~~~~--~~~~~ 603 (840)
.+.+++|. ...-|++++..-.. .-...+..|.+++.. ++...---+|..|-.++++|+..+..+ ...|+
T Consensus 28 ~l~~~Dw~----~ileicD~In~~~~----~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl 99 (152)
T 3rru_A 28 GVQTEDWG----QFMHICDIINTTQD----GPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFV 99 (152)
T ss_dssp SCCSCCHH----HHHHHHHHHHHSTT----HHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHH
T ss_pred CCCCccHH----HHHHHHHHHhCCCc----cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhH
Confidence 45567887 33445666654322 236678888888873 344444456777778888898754210 01122
Q ss_pred HHHHHHHHHHHhhc---CHHHHHHHHHHHHHHHHHcCCc
Q 003195 604 FAIVDMVSSACRKK---IKKYREAAFSCLEQVIKAFRDP 639 (840)
Q Consensus 604 ~~i~~~l~~~~~~~---~~~~R~~Al~~L~~l~~~~~~~ 639 (840)
.. .+.+.++++ ...+|..++.++.....+|+++
T Consensus 100 ~e---~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~ 135 (152)
T 3rru_A 100 KE---NLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGG 135 (152)
T ss_dssp TT---TTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSS
T ss_pred HH---HHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 22 122223322 4589999999999999999874
No 155
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=25.36 E-value=4.1e+02 Score=24.66 Aligned_cols=118 Identities=8% Similarity=0.015 Sum_probs=77.2
Q ss_pred HhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccC--CCCc
Q 003195 525 CEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAE--DPTT 602 (840)
Q Consensus 525 ~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~--~~~~ 602 (840)
...+.+++|.. ..-|++++..-+. --...+..|.++++.++..+.--.|..|-.++++|+..+..+ ...|
T Consensus 23 s~~l~~~Dw~~----ileicD~I~~~~~----~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~F 94 (171)
T 1juq_A 23 NPSNRQEDWEY----IIGFCDQINKELE----GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRF 94 (171)
T ss_dssp CTTCSSCCHHH----HHHHHHHHHHSTT----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHH
T ss_pred CCCCCCcCHHH----HHHHHHHHHcCCc----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHH
Confidence 33455678864 3356666655332 235677889999998888887788888888899998755311 1123
Q ss_pred hHHHHHHHHHHHh------hcCHHHHHHHHHHHHHHHHHcCCcchHHhHHHHHHhhccccc
Q 003195 603 PFAIVDMVSSACR------KKIKKYREAAFSCLEQVIKAFRDPKFFNIIFPLLFEMCGSTA 657 (840)
Q Consensus 603 ~~~i~~~l~~~~~------~~~~~~R~~Al~~L~~l~~~~~~~~l~~~v~~i~~~l~~~~~ 657 (840)
++.+ ++.+. ..+..+|..++.++......++++. .+......+...++
T Consensus 95 l~eL----~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~~---~i~~~y~~Lk~~G~ 148 (171)
T 1juq_A 95 LNEL----IKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEA---KIKDAYHMLKRQGI 148 (171)
T ss_dssp HHHH----HHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHTTS
T ss_pred HHHH----HHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHCCC
Confidence 4444 44443 2368999999999999999998742 23444555555544
No 156
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=24.66 E-value=4e+02 Score=24.20 Aligned_cols=107 Identities=12% Similarity=0.062 Sum_probs=68.8
Q ss_pred HhhhcCCCHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccC--CCCc
Q 003195 525 CEGIASSSWSSKRKSAKAICKLGEILGESLSNYHHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAE--DPTT 602 (840)
Q Consensus 525 ~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~--~~~~ 602 (840)
...+.+++|..= .-|++++..-+. .-...+..|.+++..++..+--..|..|-.++++|+..+..+ ...|
T Consensus 21 s~~l~~~dw~~i----leicD~I~~~~~----~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~F 92 (149)
T 3g2s_A 21 NPLNKELDWASI----NGFCEQLNEDFE----GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRF 92 (149)
T ss_dssp CTTCSSCCHHHH----HHHHHHGGGSSS----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHH
T ss_pred CCCCCCcCHHHH----HHHHHHHHCCCC----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHH
Confidence 344566777532 234444433221 235678889999998888877777888888899998755311 1124
Q ss_pred hHHHHHHHHHHH--hhcCHHHHHHHHHHHHHHHHHcCCc
Q 003195 603 PFAIVDMVSSAC--RKKIKKYREAAFSCLEQVIKAFRDP 639 (840)
Q Consensus 603 ~~~i~~~l~~~~--~~~~~~~R~~Al~~L~~l~~~~~~~ 639 (840)
+..+++.+.... .+.+..+|...+.++......|+++
T Consensus 93 l~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~ 131 (149)
T 3g2s_A 93 LNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEE 131 (149)
T ss_dssp HHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 444433332110 1347899999999999999999874
No 157
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=23.90 E-value=3.8e+02 Score=25.94 Aligned_cols=73 Identities=8% Similarity=-0.015 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhCcchhh------hHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHh
Q 003195 517 LGEIVSLICEGIASSSWSSKRKSAKAICKLGEILGESLSN------YHHVLLESIMKEVPGRLWEGKDALLYAIGSISTS 590 (840)
Q Consensus 517 l~~Il~~l~~~L~d~s~~vR~~Aa~~L~~La~~~~~~l~~------~l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~ 590 (840)
..+.+..+.+-|.+.+..+...|...|..+++..|..|.. |++.+...+-+ .....+|+.+++-+-.....
T Consensus 40 ~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~---~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 40 PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLES---TPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHHH
Confidence 3456677788889999999999999999999998876643 34444443322 33467899888888777766
Q ss_pred cc
Q 003195 591 CH 592 (840)
Q Consensus 591 ~~ 592 (840)
++
T Consensus 117 f~ 118 (220)
T 1dvp_A 117 FR 118 (220)
T ss_dssp TT
T ss_pred hc
Confidence 54
No 158
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=22.71 E-value=6.3e+02 Score=25.83 Aligned_cols=139 Identities=9% Similarity=0.050 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHhccCChHHHHHH------HHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHccCCch-hhhHHHHHHHH
Q 003195 131 NVQDAMAHIWKSLVADPKRTIDEH------LDLIFDDLLIQSGSR-LWRSREASCLSLADIIQGRKFD-QVGKHLRRIWT 202 (840)
Q Consensus 131 ~VR~a~~~iw~~Lv~d~~~~i~~~------~~~Il~~Ll~~l~~~-~wrvR~aac~Al~~Ll~~~~~~-~l~~~L~~l~~ 202 (840)
..|-.+.++|+.++.++. ...+ ...++..++..+.++ ....|-.++..++++....... .+..+..+++.
T Consensus 117 ~~~fPvLDLlRl~~l~p~--~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~ 194 (304)
T 3ebb_A 117 DIVFPALDILRLSIKHPS--VNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMS 194 (304)
T ss_dssp TTCHHHHHHHHHHTTSHH--HHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHH
T ss_pred HhHHHHHHHHHHHHcCcc--HHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHH
Confidence 456678999999887753 2222 345676677766543 3566888899999998764332 24455677777
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhHHHhHHHHHHhcccCCchhHHHHHHHHHHHHHHH
Q 003195 203 AAFRAMDDIKETVRTAGDKLCRSVTSLTIRLCDVTLTEISDARQSMDIVLPFLLAEGILSKVDSISKASIGVVMKLVK 280 (840)
Q Consensus 203 ~l~~~ldD~~~~VR~aA~~~~~~l~~~~ir~~~~~~~~~~~~~~~l~~lLP~Ll~~gL~s~~~evr~~al~~L~~la~ 280 (840)
.+...+.+.+..+|.|+..++-+++-...+.-+ ......++..+. .+++ . ..+.|..--++.++|.++.
T Consensus 195 ~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~-----~~~~~~ll~~l~-~il~-~--~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 195 HAIELKSGSNKNIHIALATLALNYSVCFHKDHN-----IEGKAQCLSLIS-TILE-V--VQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCC-----HHHHHHHHHHHH-HHHT-T--CCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCC-----chHHHHHHHHHH-HHHh-c--cCCHHHHHHHHHHHHHHHh
Confidence 777777777889999998888888755433211 011222223222 2222 1 2345666667778888774
No 159
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=21.00 E-value=1.9e+02 Score=34.08 Aligned_cols=90 Identities=6% Similarity=0.035 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH--
Q 003195 558 HHVLLESIMKEVPGRLWEGKDALLYAIGSISTSCHKDISAEDPTTPFAIVDMVSSACRKKIKKYREAAFSCLEQVIKA-- 635 (840)
Q Consensus 558 l~~llp~L~~~l~~r~~~~Ke~vl~aL~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~Al~~L~~l~~~-- 635 (840)
-..++..+.++... -+.|..+..+|++++..-...+.. ..+..++..+.+.+++.+...-+..+..|+.++..
T Consensus 46 r~~i~~~l~~~~~~--~P~Kt~vyAaLVgllN~k~pe~G~---~lv~~l~~~f~~~l~~~~~~~~k~~lrFLa~L~n~~V 120 (771)
T 1h2v_C 46 KSKILRLLCTVARL--LPEKLTIYTTLVGLLNARNYNFGG---EFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHV 120 (771)
T ss_dssp HHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCHHHHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHh--CCCcchHHHHHHHHHHcCChhHHH---HHHHHHHHHHHHHHHccChHHHHHHHHHHHHhccCCe
Confidence 33444444444322 245666777777776533222211 12333444444455555666677778888888764
Q ss_pred cCCcchHHhHHHHHHhh
Q 003195 636 FRDPKFFNIIFPLLFEM 652 (840)
Q Consensus 636 ~~~~~l~~~v~~i~~~l 652 (840)
+.+..+.+++..++...
T Consensus 121 v~~~~il~lL~~Ll~~~ 137 (771)
T 1h2v_C 121 IAAPSMVAMFENFVSVT 137 (771)
T ss_dssp BCHHHHHHHHHHHHHGG
T ss_pred ecHHHHHHHHHHHHHhh
Confidence 44444555555555543
Done!