BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003200
(840 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 168 bits (426), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 191/671 (28%), Positives = 289/671 (43%), Gaps = 85/671 (12%)
Query: 230 GLQNLTSLKHLDLDSNHFNSSIPDW--LYKFSPLECLNLRNNSLQ--GTISDAIGNLTSV 285
G + SL LDL N + + L S L+ LN+ +N+L G +S + L S+
Sbjct: 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSL 153
Query: 286 SWLDLSIN-IGLQGRIPRSMANFC-NLKSVNLRGVHLSQEIS-------EILDIFSGCVS 336
LDLS N I + +++ C LK + + G +S ++ E LD+ S S
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFS 213
Query: 337 NG---------LESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTL 387
G L+ LD+ + + G + + L LN+++N VG IP L +L
Sbjct: 214 TGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSL 271
Query: 388 RELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPF------QLVALGL 441
+ L + +NK G + +F L+ + GN + +PPF
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF-----YGAVPPFFGSCSLLESLALS 326
Query: 442 HNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKI-S 500
N + G L + L+ L+L + S P ++ L LD+ N F G I
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386
Query: 501 NLTKNTQ--LLFLSVNSNNMSGPLPLVSSN---LVYLDFSNNSFSGSISHFLCYRVNETK 555
NL +N + L L + +N +G +P SN LV L S N SG+I L
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL----GSLS 442
Query: 556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRL 615
L LKL N L+GEIP M + L+ L L N +G +P+ L + T+L W+ L NRL
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502
Query: 616 SGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDL 675
+G+IP + LA L + N F GNIP G+ S ++ L L +N F+G +P +
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFNGTIPAAM--- 558
Query: 676 AFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSV-----VYREILPLVS-------- 722
F Q +A N ++G I N GM G++ + E L +S
Sbjct: 559 -FKQSGKIAANFIAGKRYVYIKN-DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616
Query: 723 -------------------LLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESI 763
LD+S N SG I E+ ++ L +N N +G IP+ +
Sbjct: 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676
Query: 764 GTMRALESVDFSVNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPLSTQLQSFNASSFAG 823
G +R L +D S N+L G IPQ+M +G IP Q ++F + F
Sbjct: 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736
Query: 824 N-DLCGAPLPK 833
N LCG PLP+
Sbjct: 737 NPGLCGYPLPR 747
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 200/784 (25%), Positives = 334/784 (42%), Gaps = 100/784 (12%)
Query: 32 LETERRALLRFKQDLQDPSNRLASWTGDGDCCTWAGVACGNVTGHILELNLRNPSTSNPR 91
L E L+ FK L D N L W+ + + CT+ GV C + ++L +S P
Sbjct: 10 LYREIHQLISFKDVLPD-KNLLPDWSSNKNPCTFDGVTCRDDKVTSIDL------SSKPL 62
Query: 92 SMLVGKVNPAXXXXXXXXXXXXXXNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPP-- 149
++ V+ + + G + F S +L L+LS G +
Sbjct: 63 NVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSA-SLTSLDLSRNSLSGPVTTLT 120
Query: 150 QLGNLSDLQFLDLSSNYL-YVDNVWWLSGLSFLEHLDLRSVNLSKAS--DWLMATNTLPS 206
LG+ S L+FL++SSN L + V L+ LE LDL + ++S A+ W+++
Sbjct: 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC--- 177
Query: 207 LLELRLSNCSLHHFPTLASPIPRGLQ--NLTSLKHLDLDSNHFNSSIPDWLYKFSPLECL 264
L H + I + +L+ LD+ SN+F++ IP +L S L+ L
Sbjct: 178 --------GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHL 228
Query: 265 NLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEI 324
++ N L G S AI T + L++S N G IP LKS+ + ++
Sbjct: 229 DISGNKLSGDFSRAISTCTELKLLNISSN-QFVGPIPP-----LPLKSLQYLSLAENKFT 282
Query: 325 SEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIP-ESFGQ 383
EI D SG + L LD+ + YG + G L +L L++N+ G +P ++ +
Sbjct: 283 GEIPDFLSGAC-DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341
Query: 384 LSTLRELQIYDNKLNGTLSEFHFANLTK-LSWFRVGGNQLTFEVKHDWI--PPFQLVALG 440
+ L+ L + N+ +G L E NL+ L + N + + + P L L
Sbjct: 342 MRGLKVLDLSFNEFSGELPE-SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 441 LHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKI- 499
L N + P L + L L+L + +S P L S S+L+ L + LN G+I
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIP 459
Query: 500 SNLTKNTQLLFLSVNSNNMSGPLPLVSS---NLVYLDFSNNSFSGSISHFLCYRVNETKS 556
L L L ++ N+++G +P S NL ++ SNN +G I + + ++
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW----IGRLEN 515
Query: 557 LEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLS 616
L LKL++N G IP ++L L L+ N F+G +P ++ + + N ++
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI----AANFIA 571
Query: 617 GKIPISLKN------CTALASL--------------------DVDENEFVGNIPTWFGER 650
GK + +KN C +L ++ + G+ F
Sbjct: 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631
Query: 651 FSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTG 710
S M+ L + N G +PK I + +L IL+L N++SG+IP + +L G+
Sbjct: 632 GS-MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL-------- 682
Query: 711 SVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALE 770
++LD+S N G I ++ L L I+ S N +G IPE +G
Sbjct: 683 -----------NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFP 730
Query: 771 SVDF 774
F
Sbjct: 731 PAKF 734
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 191/671 (28%), Positives = 289/671 (43%), Gaps = 85/671 (12%)
Query: 230 GLQNLTSLKHLDLDSNHFNSSIPDW--LYKFSPLECLNLRNNSLQ--GTISDAIGNLTSV 285
G + SL LDL N + + L S L+ LN+ +N+L G +S + L S+
Sbjct: 92 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSL 150
Query: 286 SWLDLSIN-IGLQGRIPRSMANFC-NLKSVNLRGVHLSQEIS-------EILDIFSGCVS 336
LDLS N I + +++ C LK + + G +S ++ E LD+ S S
Sbjct: 151 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFS 210
Query: 337 NG---------LESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTL 387
G L+ LD+ + + G + + L LN+++N VG IP L +L
Sbjct: 211 TGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSL 268
Query: 388 RELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPF------QLVALGL 441
+ L + +NK G + +F L+ + GN + +PPF
Sbjct: 269 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF-----YGAVPPFFGSCSLLESLALS 323
Query: 442 HNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKI-S 500
N + G L + L+ L+L + S P ++ L LD+ N F G I
Sbjct: 324 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 383
Query: 501 NLTKNTQ--LLFLSVNSNNMSGPLPLVSSN---LVYLDFSNNSFSGSISHFLCYRVNETK 555
NL +N + L L + +N +G +P SN LV L S N SG+I L
Sbjct: 384 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL----GSLS 439
Query: 556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRL 615
L LKL N L+GEIP M + L+ L L N +G +P+ L + T+L W+ L NRL
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 499
Query: 616 SGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDL 675
+G+IP + LA L + N F GNIP G+ S ++ L L +N F+G +P +
Sbjct: 500 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFNGTIPAAM--- 555
Query: 676 AFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSV-----VYREILPLVS-------- 722
F Q +A N ++G I N GM G++ + E L +S
Sbjct: 556 -FKQSGKIAANFIAGKRYVYIKN-DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 613
Query: 723 -------------------LLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESI 763
LD+S N SG I E+ ++ L +N N +G IP+ +
Sbjct: 614 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 673
Query: 764 GTMRALESVDFSVNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPLSTQLQSFNASSFAG 823
G +R L +D S N+L G IPQ+M +G IP Q ++F + F
Sbjct: 674 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 733
Query: 824 N-DLCGAPLPK 833
N LCG PLP+
Sbjct: 734 NPGLCGYPLPR 744
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 200/784 (25%), Positives = 333/784 (42%), Gaps = 100/784 (12%)
Query: 32 LETERRALLRFKQDLQDPSNRLASWTGDGDCCTWAGVACGNVTGHILELNLRNPSTSNPR 91
L E L+ FK L D N L W+ + + CT+ GV C + ++L +S P
Sbjct: 7 LYREIHQLISFKDVLPD-KNLLPDWSSNKNPCTFDGVTCRDDKVTSIDL------SSKPL 59
Query: 92 SMLVGKVNPAXXXXXXXXXXXXXXNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPP-- 149
++ V+ + + G + F S +L L+LS G +
Sbjct: 60 NVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSA-SLTSLDLSRNSLSGPVTTLT 117
Query: 150 QLGNLSDLQFLDLSSNYL-YVDNVWWLSGLSFLEHLDLRSVNLSKAS--DWLMATNTLPS 206
LG+ S L+FL++SSN L + V L+ LE LDL + ++S A+ W+++
Sbjct: 118 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC--- 174
Query: 207 LLELRLSNCSLHHFPTLASPIPRGLQ--NLTSLKHLDLDSNHFNSSIPDWLYKFSPLECL 264
L H + I + +L+ LD+ SN+F++ IP +L S L+ L
Sbjct: 175 --------GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHL 225
Query: 265 NLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEI 324
++ N L G S AI T + L++S N G IP LKS+ + ++
Sbjct: 226 DISGNKLSGDFSRAISTCTELKLLNISSN-QFVGPIPP-----LPLKSLQYLSLAENKFT 279
Query: 325 SEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIP-ESFGQ 383
EI D SG L LD+ + YG + G L +L L++N+ G +P ++ +
Sbjct: 280 GEIPDFLSGACDT-LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 338
Query: 384 LSTLRELQIYDNKLNGTLSEFHFANLTK-LSWFRVGGNQLTFEVKHDWI--PPFQLVALG 440
+ L+ L + N+ +G L E NL+ L + N + + + P L L
Sbjct: 339 MRGLKVLDLSFNEFSGELPE-SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 441 LHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKI- 499
L N + P L + L L+L + +S P L S S+L+ L + LN G+I
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIP 456
Query: 500 SNLTKNTQLLFLSVNSNNMSGPLPLVSS---NLVYLDFSNNSFSGSISHFLCYRVNETKS 556
L L L ++ N+++G +P S NL ++ SNN +G I + + ++
Sbjct: 457 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW----IGRLEN 512
Query: 557 LEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLS 616
L LKL++N G IP ++L L L+ N F+G +P ++ + + N ++
Sbjct: 513 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI----AANFIA 568
Query: 617 GKIPISLKN------CTALASL--------------------DVDENEFVGNIPTWFGER 650
GK + +KN C +L ++ + G+ F
Sbjct: 569 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 628
Query: 651 FSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTG 710
S M+ L + N G +PK I + +L IL+L N++SG+IP + +L G+
Sbjct: 629 GS-MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL-------- 679
Query: 711 SVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALE 770
++LD+S N G I ++ L L I+ S N +G IPE +G
Sbjct: 680 -----------NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFP 727
Query: 771 SVDF 774
F
Sbjct: 728 PAKF 731
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 118/274 (43%), Gaps = 49/274 (17%)
Query: 565 NYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLK 624
N L G IP L L +++ SG +P+ L I +LV L N LSG +P S+
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 625 NCTALASLDVDENEFVGNIPTWFGERFSRMLV-LILRSNQFHGPLPKTICDLAFLQILDL 683
+ L + D N G IP +G FS++ + + N+ G +P T +L L +DL
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGS-FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204
Query: 684 ADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLK 743
+ N L G SV++ + +++N+ + + L +V K
Sbjct: 205 SRNMLEG------------------DASVLFGSD-KNTQKIHLAKNSLAFD-LGKVGLSK 244
Query: 744 ALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMXXXXXXXXXXXXXXXX 803
L ++ N G +P+ + ++ L S++ S N L GEIPQ
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ------------------ 286
Query: 804 TGKIPLSTQLQSFNASSFAGND-LCGAPLPKNCT 836
LQ F+ S++A N LCG+PLP CT
Sbjct: 287 ------GGNLQRFDVSAYANNKCLCGSPLPA-CT 313
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 113/270 (41%), Gaps = 36/270 (13%)
Query: 517 NMSGPLPLVSS--NLVYLDFSNNSFSGSISHF---LCYRVNETKSLEGLKLTDNYLQGEI 571
N+ P P+ SS NL YL+F + G I++ + + + L L +T + G I
Sbjct: 61 NLPKPYPIPSSLANLPYLNFL---YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI 117
Query: 572 PDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTAL-A 630
PD + L L S N SG LP S+ S+ +LV + NR+SG IP S + + L
Sbjct: 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177
Query: 631 SLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSG 690
S+ + N G IP F + + L N G Q + LA N+L+
Sbjct: 178 SMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235
Query: 691 AIPKC--ISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSI 748
+ K NL G LD+ N G + +T LK L S+
Sbjct: 236 DLGKVGLSKNLNG----------------------LDLRNNRIYGTLPQGLTQLKFLHSL 273
Query: 749 NFSFNTFTGRIPESIGTMRALESVDFSVNQ 778
N SFN G IP+ G ++ + ++ N+
Sbjct: 274 NVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 105/241 (43%), Gaps = 48/241 (19%)
Query: 181 LEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHL 240
+ +LDL +NL K + LP L L + + L PIP + LT L +L
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN-----NLVGPIPPAIAKLTQLHYL 106
Query: 241 DLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLT----------------- 283
+ + + +IPD+L + L L+ N+L GT+ +I +L
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 284 ----SVSWLDLSINIG---LQGRIPRSMAN----FCNLKSVNLRG--------------V 318
S S L S+ I L G+IP + AN F +L L G +
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 319 HLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIP 378
HL++ S D+ +S L LD+R++ IYG L L Q + L +LN++ N++ G IP
Sbjct: 227 HLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Query: 379 E 379
+
Sbjct: 286 Q 286
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 20/121 (16%)
Query: 667 PLPKTICDLAFLQILDLAD-NNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLD 725
P+P ++ +L +L L + NNL G IP I+ LT + L
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL-------------------HYLY 107
Query: 726 ISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQ 785
I+ N SG I ++ +K L +++FS+N +G +P SI ++ L + F N++SG IP
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 786 S 786
S
Sbjct: 168 S 168
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 28/162 (17%)
Query: 31 CLETERRALLRFKQDLQDPSNRLASWTGDGDCC--TWAGVACGNVTG-------HILELN 81
C +++ALL+ K+DL +P+ L+SW DCC TW GV C T + LN
Sbjct: 3 CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 82 LRNPSTSNPRSM----------------LVGKVNPAXXXXXXXXXXXXXXNDFQGVQIPR 125
L P P S+ LVG + PA + G IP
Sbjct: 62 LPKPYPI-PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPD 119
Query: 126 FIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYL 167
F+ ++ L L+ S G +PP + +L +L + N +
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 33/229 (14%)
Query: 371 NSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDW 430
N++VG IP + +L+ L L I ++G + +F LS +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-------LSQIKT------------- 126
Query: 431 IPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDV 490
LV L + P + S +L + +RIS P + + + +
Sbjct: 127 -----LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 491 GLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLV---SSNLVYLDFSNNSFSGSISHFL 547
N+ GKI N L F+ ++ N + G ++ N + + NS + F
Sbjct: 182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA-----FD 236
Query: 548 CYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLP 596
+V +K+L GL L +N + G +P + L L +S N G +P
Sbjct: 237 LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 718 LPLVSLLDISR-NNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSV 776
LP ++ L I NN G I + L L + + +G IP+ + ++ L ++DFS
Sbjct: 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134
Query: 777 NQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIP 808
N LSG +P S+ +G IP
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 147/342 (42%), Gaps = 62/342 (18%)
Query: 190 NLSKASDWLMATNTLPSLLEL-RLSNCS-LHHFPTLASPIPRGLQNLTSLKHLDLDSNHF 247
NL+K D LM N + + L L+N + L F + I L+NLT+L L+L SN
Sbjct: 83 NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTI 141
Query: 248 NSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANF 307
S L + L+ LN +N Q T + NLT++ LD+S N + +A
Sbjct: 142 --SDISALSGLTSLQQLNFSSN--QVTDLKPLANLTTLERLDISSNKVSDISV---LAKL 194
Query: 308 CNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLN 367
NL+S+ + + +IS+I + G ++N L+ L + + + T L NL L+
Sbjct: 195 TNLESL----IATNNQISDITPL--GILTN-LDELSLNGNQLKDIGT--LASLTNLTDLD 245
Query: 368 LANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVK 427
LANN I L P + LTKL+ ++G NQ++
Sbjct: 246 LANNQISNLAP---------------------------LSGLTKLTELKLGANQISN--- 275
Query: 428 HDWIPPF----QLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSAS 483
I P L L L+ + P + + K+L YL L + ISDI P+ L
Sbjct: 276 ---ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQ 330
Query: 484 QLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLV 525
+L F N +S+L T + +LS N +S PL
Sbjct: 331 RLFF----YNNKVSDVSSLANLTNINWLSAGHNQISDLTPLA 368
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 108/249 (43%), Gaps = 42/249 (16%)
Query: 557 LEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLS 616
L GL L +N + D + NL L+LS+N S ++L +TSL L N+++
Sbjct: 109 LTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVT 164
Query: 617 GKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLP------- 669
P L N T L LD+ N+ V +I + + + LI +NQ P
Sbjct: 165 DLKP--LANLTTLERLDISSNK-VSDISVL--AKLTNLESLIATNNQISDITPLGILTNL 219
Query: 670 -------------KTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYRE 716
T+ L L LDLA+N +S P +S LT + +K G+
Sbjct: 220 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK--LGANQISN 275
Query: 717 ILPLVSL-----LDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALES 771
I PL L L+++ N E +S ++NLK L + FN + P + ++ L+
Sbjct: 276 ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 331
Query: 772 VDFSVNQLS 780
+ F N++S
Sbjct: 332 LFFYNNKVS 340
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 117/297 (39%), Gaps = 81/297 (27%)
Query: 127 IGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDL 186
+ + +L+ LN S Q + P L NL+ L+ LD+SSN V ++ L+ L+ LE L
Sbjct: 147 LSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSN--KVSDISVLAKLTNLESLIA 202
Query: 187 RSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNH 246
+ +S + + TN L EL L+ L TLAS LT+L LDL +N
Sbjct: 203 TNNQISDITPLGILTN----LDELSLNGNQLKDIGTLAS--------LTNLTDLDLANNQ 250
Query: 247 FNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMAN 306
++ P L + L L L N I N++ ++ L N+ L ++
Sbjct: 251 ISNLAP--LSGLTKLTELKLGANQ--------ISNISPLAGLTALTNLELNENQLEDISP 300
Query: 307 FCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTL 366
NLK NL L
Sbjct: 301 ISNLK--------------------------------------------------NLTYL 310
Query: 367 NLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLT 423
L N+I + P S L+ L+ L Y+NK++ S ANLT ++W G NQ++
Sbjct: 311 TLYFNNISDISPVS--SLTKLQRLFFYNNKVSDVSS---LANLTNINWLSAGHNQIS 362
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 126/298 (42%), Gaps = 26/298 (8%)
Query: 339 LESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPES-FGQLSTLRELQIYDNKL 397
LE L++ + + NL TL L +N + LIP F LS L +L I +NK+
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISENKI 116
Query: 398 NGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQ 457
L ++ F +L L VG N L + + L L L C + S + L
Sbjct: 117 -VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL--- 172
Query: 458 KHLQYLNLLNSRISDIFPIR--FLKSASQLKFLDVGLNQFHGKIS-NLTKNTQLLFLSVN 514
HL L +L R +I IR K +LK L++ + ++ N L LS+
Sbjct: 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232
Query: 515 SNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDC 574
N++ L +LVYL F N S++ IS ++E L+ ++L L P
Sbjct: 233 HCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291
Query: 575 WMSYQNLKVLKLSNNKFS----------GNLP------NSLGSITSLVWLYLRKNRLS 616
+ L+VL +S N+ + GNL N L L+W++ R+ RL+
Sbjct: 292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLN 349
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 86/179 (48%), Gaps = 11/179 (6%)
Query: 116 NDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWL 175
N + + + F G + NL L++S+ + V ++ +L +L+ L++ N L +
Sbjct: 90 NRLKLIPLGVFTG-LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF 148
Query: 176 SGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLT 235
SGL+ LE L L NL+ A + L L+ LRL + +++ + + L
Sbjct: 149 SGLNSLEQLTLEKCNLTSIPT--EALSHLHGLIVLRLRHLNINAIRDYS------FKRLY 200
Query: 236 SLKHLDLDS-NHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSIN 293
LK L++ + ++ P+ LY + L L++ + +L A+ +L + +L+LS N
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 146/342 (42%), Gaps = 63/342 (18%)
Query: 190 NLSKASDWLMATNTLPSLLEL-RLSNCS-LHHFPTLASPIPRGLQNLTSLKHLDLDSNHF 247
NL+K D LM N + + L L+N + L F + I L+NLT+L L+L SN
Sbjct: 83 NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTI 141
Query: 248 NSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANF 307
S L + L+ LN N Q T + NLT++ LD+S N + +A
Sbjct: 142 --SDISALSGLTSLQQLNFGN---QVTDLKPLANLTTLERLDISSNKVSDISV---LAKL 193
Query: 308 CNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLN 367
NL+S+ + + +IS+I + G ++N L+ L + + + T L NL L+
Sbjct: 194 TNLESL----IATNNQISDITPL--GILTN-LDELSLNGNQLKDIGT--LASLTNLTDLD 244
Query: 368 LANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVK 427
LANN I L P + LTKL+ ++G NQ++
Sbjct: 245 LANNQISNLAP---------------------------LSGLTKLTELKLGANQISN--- 274
Query: 428 HDWIPPF----QLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSAS 483
I P L L L+ + P + + K+L YL L + ISDI P+ L
Sbjct: 275 ---ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQ 329
Query: 484 QLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLV 525
+L F N +S+L T + +LS N +S PL
Sbjct: 330 RLFF----YNNKVSDVSSLANLTNINWLSAGHNQISDLTPLA 367
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 35/205 (17%)
Query: 605 LVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQF 664
L + N+L+ P LKN T L + ++ N+ P + + L L +NQ
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL---ANLTNLTGLTLFNNQI 119
Query: 665 HGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSL- 723
P + +L L L+L+ N +S IS L+G+ +++ ++ PL +L
Sbjct: 120 TDIDP--LKNLTNLNRLELSSNTISD-----ISALSGLTSLQQLNFGNQVTDLKPLANLT 172
Query: 724 ----LDISRNNFSG-EILSEVTNLKALQSINFSFNTFT--------------GRIPESIG 764
LDIS N S +L+++TNL++L + N + T G + IG
Sbjct: 173 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 232
Query: 765 TMRALES---VDFSVNQLSGEIPQS 786
T+ +L + +D + NQ+S P S
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPLS 257
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 108/249 (43%), Gaps = 43/249 (17%)
Query: 557 LEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLS 616
L GL L +N + D + NL L+LS+N S ++L +TSL L N+++
Sbjct: 109 LTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNF-GNQVT 163
Query: 617 GKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLP------- 669
P L N T L LD+ N+ V +I + + + LI +NQ P
Sbjct: 164 DLKP--LANLTTLERLDISSNK-VSDISVL--AKLTNLESLIATNNQISDITPLGILTNL 218
Query: 670 -------------KTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYRE 716
T+ L L LDLA+N +S P +S LT + +K G+
Sbjct: 219 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK--LGANQISN 274
Query: 717 ILPLVSL-----LDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALES 771
I PL L L+++ N E +S ++NLK L + FN + P + ++ L+
Sbjct: 275 ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 330
Query: 772 VDFSVNQLS 780
+ F N++S
Sbjct: 331 LFFYNNKVS 339
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 117/297 (39%), Gaps = 82/297 (27%)
Query: 127 IGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDL 186
+ + +L+ LN + Q + P L NL+ L+ LD+SSN V ++ L+ L+ LE L
Sbjct: 147 LSGLTSLQQLNFGN-QVTDLKP--LANLTTLERLDISSN--KVSDISVLAKLTNLESLIA 201
Query: 187 RSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNH 246
+ +S + + TN L EL L+ L TLAS LT+L LDL +N
Sbjct: 202 TNNQISDITPLGILTN----LDELSLNGNQLKDIGTLAS--------LTNLTDLDLANNQ 249
Query: 247 FNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMAN 306
++ P L + L L L N I N++ ++ L N+ L ++
Sbjct: 250 ISNLAP--LSGLTKLTELKLGANQ--------ISNISPLAGLTALTNLELNENQLEDISP 299
Query: 307 FCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTL 366
NLK NL L
Sbjct: 300 ISNLK--------------------------------------------------NLTYL 309
Query: 367 NLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLT 423
L N+I + P S L+ L+ L Y+NK++ S ANLT ++W G NQ++
Sbjct: 310 TLYFNNISDISPVS--SLTKLQRLFFYNNKVSDVSS---LANLTNINWLSAGHNQIS 361
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 94/212 (44%), Gaps = 36/212 (16%)
Query: 209 ELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRN 268
L L NC FPTL L SLK L SN ++ + LE L+L
Sbjct: 308 HLELVNCKFGQFPTLK---------LKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSR 356
Query: 269 N--SLQGTISDAIGNLTSVSWLDLSIN---------IGLQGRIPRSMANFCNLKSVNLRG 317
N S +G S + TS+ +LDLS N +GL+ ++ NLK ++
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE-QLEHLDFQHSNLKQMSEFS 415
Query: 318 VHLSQEISEILDI--------FSGCVSNGLESLD---MRSSSIYGH-LTDQLGQFRNLVT 365
V LS LDI F+G + NGL SL+ M +S + L D + RNL
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 366 LNLANNSIVGLIPESFGQLSTLRELQIYDNKL 397
L+L+ + L P +F LS+L+ L + N+L
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 126/523 (24%), Positives = 196/523 (37%), Gaps = 102/523 (19%)
Query: 129 SMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRS 188
S L+ L+LS + + +LS L L L+ N + + SGLS L+ L
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 189 VNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFN 248
NL+ ++ + L +L EL +++ + F +P NLT+L+HLDL SN
Sbjct: 110 TNLASLENFPIGH--LKTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSN--- 159
Query: 249 SSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFC 308
K + C +LR + + L P +
Sbjct: 160 --------KIQSIYCTDLR----------------VLHQMPLLNLSLDLSLNPMNFIQPG 195
Query: 309 NLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNL 368
K + L + L L++ C+ GL L++ LG+FRN L
Sbjct: 196 AFKEIRLHKLTLRNNFDS-LNVMKTCI-QGLAGLEVHRLV--------LGEFRNEGNLEK 245
Query: 369 ANNS----IVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTF 424
+ S + L E F L D L+ + F+ LT +S F + +T
Sbjct: 246 FDKSALEGLCNLTIEEF-------RLAYLDYYLDDIIDLFNC--LTNVSSFSLVS--VTI 294
Query: 425 EVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIF------PIRF 478
E D+ F L L NC G +FP K L+ L +++ + F + F
Sbjct: 295 ERVKDFSYNFGWQHLELVNCKFG-QFPTL--KLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351
Query: 479 LK-----------------SASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSG- 520
L + LK+LD+ N SN QL L +N+
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411
Query: 521 ---PLPLVSSNLVYLDFSNN----SFSGSISHFLCYRVNETKSLEGLKLTDNYLQGE-IP 572
+ L NL+YLD S+ +F+G N SLE LK+ N Q +P
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIF--------NGLSSLEVLKMAGNSFQENFLP 463
Query: 573 DCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRL 615
D + +NL L LS + P + S++SL L + N+L
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 116 NDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYL 167
N FQ +P +RNL +L+LS Q + P +LS LQ L+++SN L
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 77/200 (38%), Gaps = 40/200 (20%)
Query: 116 NDFQGVQIPRFIGSMRNLRYLNLSDT--QFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVW 173
N F V +P +L +L+LS F G + L++LDLS N + +
Sbjct: 339 NAFSEVDLP-------SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391
Query: 174 WLSGLSFLEHLDLRSVNLSKASDWLM-----------------------ATNTLPSLLEL 210
+L GL LEHLD + NL + S++ + N L SL L
Sbjct: 392 FL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450
Query: 211 RLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNS 270
+++ S + +P L +L LDL P S L+ LN+ +N
Sbjct: 451 KMAGNSFQE-----NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505
Query: 271 LQGTISDAIGNLTSVS--WL 288
L+ LTS+ WL
Sbjct: 506 LKSVPDGIFDRLTSLQKIWL 525
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 146/342 (42%), Gaps = 63/342 (18%)
Query: 190 NLSKASDWLMATNTLPSLLEL-RLSNCS-LHHFPTLASPIPRGLQNLTSLKHLDLDSNHF 247
NL+K D LM N + + L L+N + L F + I L+NLT+L L+L SN
Sbjct: 83 NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTI 141
Query: 248 NSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANF 307
S L + L+ LN N Q T + NLT++ LD+S N + +A
Sbjct: 142 --SDISALSGLTSLQQLNFGN---QVTDLKPLANLTTLERLDISSNKVSDISV---LAKL 193
Query: 308 CNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLN 367
NL+S+ + + +IS+I + G ++N L+ L + + + T L NL L+
Sbjct: 194 TNLESL----IATNNQISDITPL--GILTN-LDELSLNGNQLKDIGT--LASLTNLTDLD 244
Query: 368 LANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVK 427
LANN I L P + LTKL+ ++G NQ++
Sbjct: 245 LANNQISNLAP---------------------------LSGLTKLTELKLGANQISN--- 274
Query: 428 HDWIPPF----QLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSAS 483
I P L L L+ + P + + K+L YL L + ISDI P+ L
Sbjct: 275 ---ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQ 329
Query: 484 QLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLV 525
+L F N +S+L T + +LS N +S PL
Sbjct: 330 RLFF----SNNKVSDVSSLANLTNINWLSAGHNQISDLTPLA 367
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 109/249 (43%), Gaps = 43/249 (17%)
Query: 557 LEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLS 616
L GL L +N + D + NL L+LS+N S ++L +TSL L N+++
Sbjct: 109 LTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNF-GNQVT 163
Query: 617 GKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLP------- 669
P L N T L LD+ N+ V +I + + + LI +NQ P
Sbjct: 164 DLKP--LANLTTLERLDISSNK-VSDISVL--AKLTNLESLIATNNQISDITPLGILTNL 218
Query: 670 -------------KTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYRE 716
T+ L L LDLA+N +S P +S LT + +K G+
Sbjct: 219 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK--LGANQISN 274
Query: 717 ILPLVSL-----LDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALES 771
I PL L L+++ N E +S ++NLK L + FN + P + ++ L+
Sbjct: 275 ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 330
Query: 772 VDFSVNQLS 780
+ FS N++S
Sbjct: 331 LFFSNNKVS 339
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 35/205 (17%)
Query: 605 LVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQF 664
L + N+L+ P LKN T L + ++ N+ P + + L L +NQ
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL---ANLTNLTGLTLFNNQI 119
Query: 665 HGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSL- 723
P + +L L L+L+ N +S IS L+G+ +++ ++ PL +L
Sbjct: 120 TDIDP--LKNLTNLNRLELSSNTISD-----ISALSGLTSLQQLNFGNQVTDLKPLANLT 172
Query: 724 ----LDISRNNFSG-EILSEVTNLKALQSINFSFNTFT--------------GRIPESIG 764
LDIS N S +L+++TNL++L + N + T G + IG
Sbjct: 173 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 232
Query: 765 TMRALES---VDFSVNQLSGEIPQS 786
T+ +L + +D + NQ+S P S
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPLS 257
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 18/137 (13%)
Query: 127 IGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDL 186
+ + +L+ LN + Q + P L NL+ L+ LD+SSN V ++ L+ L+ LE L
Sbjct: 147 LSGLTSLQQLNFGN-QVTDLKP--LANLTTLERLDISSN--KVSDISVLAKLTNLESLIA 201
Query: 187 RSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNH 246
+ +S + + TN L EL L+ L TLAS LT+L LDL +N
Sbjct: 202 TNNQISDITPLGILTN----LDELSLNGNQLKDIGTLAS--------LTNLTDLDLANNQ 249
Query: 247 FNSSIP-DWLYKFSPLE 262
++ P L K + L+
Sbjct: 250 ISNLAPLSGLTKLTELK 266
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 136/318 (42%), Gaps = 53/318 (16%)
Query: 231 LQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDL 290
L+NLT L + +++N P L + L L L NN Q T D + NLT+++ L+L
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN--QITDIDPLKNLTNLNRLEL 136
Query: 291 SINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIY 350
S N ++ L S+ LS +++ D+ LE LD+ S+ +
Sbjct: 137 SSNT------ISDISALSGLTSLQ----QLSFSSNQVTDLKPLANLTTLERLDISSNKVS 186
Query: 351 GHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLN--GTL------S 402
L + NL +L NN I + P G L+ L EL + N+L GTL +
Sbjct: 187 D--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLT 242
Query: 403 EFHFAN-----------LTKLSWFRVGGNQLTFEVKHDWIPPF----QLVALGLHNCYVG 447
+ AN LTKL+ ++G NQ++ I P L L L+ +
Sbjct: 243 DLDLANNQISNLAPLSGLTKLTELKLGANQISN------ISPLAGLTALTNLELNENQLE 296
Query: 448 SRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQ 507
P + + K+L YL L + ISDI P+ L +L F N +S+L T
Sbjct: 297 DISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF----YNNKVSDVSSLANLTN 350
Query: 508 LLFLSVNSNNMSGPLPLV 525
+ +LS N +S PL
Sbjct: 351 INWLSAGHNQISDLTPLA 368
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 108/249 (43%), Gaps = 42/249 (16%)
Query: 557 LEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLS 616
L GL L +N + D + NL L+LS+N S ++L +TSL L N+++
Sbjct: 109 LTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVT 164
Query: 617 GKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLP------- 669
P L N T L LD+ N+ V +I + + + LI +NQ P
Sbjct: 165 DLKP--LANLTTLERLDISSNK-VSDISVL--AKLTNLESLIATNNQISDITPLGILTNL 219
Query: 670 -------------KTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYRE 716
T+ L L LDLA+N +S P +S LT + +K G+
Sbjct: 220 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK--LGANQISN 275
Query: 717 ILPLVSL-----LDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALES 771
I PL L L+++ N E +S ++NLK L + FN + P + ++ L+
Sbjct: 276 ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 331
Query: 772 VDFSVNQLS 780
+ F N++S
Sbjct: 332 LFFYNNKVS 340
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 117/297 (39%), Gaps = 81/297 (27%)
Query: 127 IGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDL 186
+ + +L+ L+ S Q + P L NL+ L+ LD+SSN V ++ L+ L+ LE L
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSN--KVSDISVLAKLTNLESLIA 202
Query: 187 RSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNH 246
+ +S + + TN L EL L+ L TLAS LT+L LDL +N
Sbjct: 203 TNNQISDITPLGILTN----LDELSLNGNQLKDIGTLAS--------LTNLTDLDLANNQ 250
Query: 247 FNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMAN 306
++ P L + L L L N I N++ ++ L N+ L ++
Sbjct: 251 ISNLAP--LSGLTKLTELKLGANQ--------ISNISPLAGLTALTNLELNENQLEDISP 300
Query: 307 FCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTL 366
NLK NL L
Sbjct: 301 ISNLK--------------------------------------------------NLTYL 310
Query: 367 NLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLT 423
L N+I + P S L+ L+ L Y+NK++ S ANLT ++W G NQ++
Sbjct: 311 TLYFNNISDISPVS--SLTKLQRLFFYNNKVSDVSS---LANLTNINWLSAGHNQIS 362
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 138/321 (42%), Gaps = 60/321 (18%)
Query: 231 LQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDL 290
L+NLT L + +++N P L + L L L NN Q T D + NLT+++ L+L
Sbjct: 85 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN--QITDIDPLKNLTNLNRLEL 140
Query: 291 SINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEIS---EILDIFSGCVSNGLESLDMRSS 347
S N ++ + L G+ Q++S ++ D+ LE LD+ S+
Sbjct: 141 SSNT------------ISDISA--LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 186
Query: 348 SIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLN--GTL---- 401
+ L + NL +L NN I + P G L+ L EL + N+L GTL
Sbjct: 187 KVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLT 242
Query: 402 --SEFHFAN-----------LTKLSWFRVGGNQLTFEVKHDWIPPF----QLVALGLHNC 444
++ AN LTKL+ ++G NQ++ I P L L L+
Sbjct: 243 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN------ISPLAGLTALTNLELNEN 296
Query: 445 YVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTK 504
+ P + + K+L YL L + ISDI P+ L +L F N +S+L
Sbjct: 297 QLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF----ANNKVSDVSSLAN 350
Query: 505 NTQLLFLSVNSNNMSGPLPLV 525
T + +LS N +S PL
Sbjct: 351 LTNINWLSAGHNQISDLTPLA 371
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 109/249 (43%), Gaps = 43/249 (17%)
Query: 557 LEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLS 616
L GL L +N + D + NL L+LS+N S ++L +TSL L N+++
Sbjct: 113 LTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVT 167
Query: 617 GKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLP------- 669
P L N T L LD+ N+ V +I + + + LI +NQ P
Sbjct: 168 DLKP--LANLTTLERLDISSNK-VSDISVL--AKLTNLESLIATNNQISDITPLGILTNL 222
Query: 670 -------------KTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYRE 716
T+ L L LDLA+N +S P +S LT + +K G+
Sbjct: 223 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK--LGANQISN 278
Query: 717 ILPLVSL-----LDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALES 771
I PL L L+++ N E +S ++NLK L + FN + P + ++ L+
Sbjct: 279 ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 334
Query: 772 VDFSVNQLS 780
+ F+ N++S
Sbjct: 335 LFFANNKVS 343
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 35/205 (17%)
Query: 605 LVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQF 664
L + N+L+ P LKN T L + ++ N+ P + + L L +NQ
Sbjct: 69 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL---ANLTNLTGLTLFNNQI 123
Query: 665 HGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSL- 723
P + +L L L+L+ N +S IS L+G+ +++ + ++ PL +L
Sbjct: 124 TDIDP--LKNLTNLNRLELSSNTISD-----ISALSGLTSLQQLSFGNQVTDLKPLANLT 176
Query: 724 ----LDISRNNFSG-EILSEVTNLKALQSINFSFNTFT--------------GRIPESIG 764
LDIS N S +L+++TNL++L + N + T G + IG
Sbjct: 177 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 236
Query: 765 TMRALES---VDFSVNQLSGEIPQS 786
T+ +L + +D + NQ+S P S
Sbjct: 237 TLASLTNLTDLDLANNQISNLAPLS 261
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 15/113 (13%)
Query: 151 LGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLEL 210
L NL+ L+ LD+SSN V ++ L+ L+ LE L + +S + + TN L EL
Sbjct: 172 LANLTTLERLDISSN--KVSDISVLAKLTNLESLIATNNQISDITPLGILTN----LDEL 225
Query: 211 RLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIP-DWLYKFSPLE 262
L+ L TLAS LT+L LDL +N ++ P L K + L+
Sbjct: 226 SLNGNQLKDIGTLAS--------LTNLTDLDLANNQISNLAPLSGLTKLTELK 270
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 138/321 (42%), Gaps = 60/321 (18%)
Query: 231 LQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDL 290
L+NLT L + +++N P L + L L L NN Q T D + NLT+++ L+L
Sbjct: 86 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN--QITDIDPLKNLTNLNRLEL 141
Query: 291 SINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEIS---EILDIFSGCVSNGLESLDMRSS 347
S N ++ + L G+ Q++S ++ D+ LE LD+ S+
Sbjct: 142 SSNT------------ISDISA--LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 187
Query: 348 SIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLN--GTL---- 401
+ L + NL +L NN I + P G L+ L EL + N+L GTL
Sbjct: 188 KVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLT 243
Query: 402 --SEFHFAN-----------LTKLSWFRVGGNQLTFEVKHDWIPPF----QLVALGLHNC 444
++ AN LTKL+ ++G NQ++ I P L L L+
Sbjct: 244 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN------ISPLAGLTALTNLELNEN 297
Query: 445 YVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTK 504
+ P + + K+L YL L + ISDI P+ L +L F N +S+L
Sbjct: 298 QLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF----YNNKVSDVSSLAN 351
Query: 505 NTQLLFLSVNSNNMSGPLPLV 525
T + +LS N +S PL
Sbjct: 352 LTNINWLSAGHNQISDLTPLA 372
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 35/205 (17%)
Query: 605 LVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQF 664
L + N+L+ P LKN T L + ++ N+ P + + L L +NQ
Sbjct: 70 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL---ANLTNLTGLTLFNNQI 124
Query: 665 HGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSL- 723
P + +L L L+L+ N +S IS L+G+ +++ + ++ PL +L
Sbjct: 125 TDIDP--LKNLTNLNRLELSSNTISD-----ISALSGLTSLQQLSFGNQVTDLKPLANLT 177
Query: 724 ----LDISRNNFSG-EILSEVTNLKALQSINFSFNTFT--------------GRIPESIG 764
LDIS N S +L+++TNL++L + N + T G + IG
Sbjct: 178 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 237
Query: 765 TMRALES---VDFSVNQLSGEIPQS 786
T+ +L + +D + NQ+S P S
Sbjct: 238 TLASLTNLTDLDLANNQISNLAPLS 262
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 108/249 (43%), Gaps = 43/249 (17%)
Query: 557 LEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLS 616
L GL L +N + D + NL L+LS+N S ++L +TSL L N+++
Sbjct: 114 LTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVT 168
Query: 617 GKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLP------- 669
P L N T L LD+ N+ V +I + + + LI +NQ P
Sbjct: 169 DLKP--LANLTTLERLDISSNK-VSDISVL--AKLTNLESLIATNNQISDITPLGILTNL 223
Query: 670 -------------KTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYRE 716
T+ L L LDLA+N +S P +S LT + +K G+
Sbjct: 224 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK--LGANQISN 279
Query: 717 ILPLVSL-----LDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALES 771
I PL L L+++ N E +S ++NLK L + FN + P + ++ L+
Sbjct: 280 ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335
Query: 772 VDFSVNQLS 780
+ F N++S
Sbjct: 336 LFFYNNKVS 344
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 106/273 (38%), Gaps = 79/273 (28%)
Query: 151 LGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLEL 210
L NL+ L+ LD+SSN V ++ L+ L+ LE L + +S + + TN L EL
Sbjct: 173 LANLTTLERLDISSN--KVSDISVLAKLTNLESLIATNNQISDITPLGILTN----LDEL 226
Query: 211 RLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNS 270
L+ L TLAS LT+L LDL +N ++ P L + L L L N
Sbjct: 227 SLNGNQLKDIGTLAS--------LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 276
Query: 271 LQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDI 330
I N++ ++ L N+ L ++ NLK
Sbjct: 277 --------ISNISPLAGLTALTNLELNENQLEDISPISNLK------------------- 309
Query: 331 FSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLREL 390
NL L L N+I + P S L+ L+ L
Sbjct: 310 -------------------------------NLTYLTLYFNNISDISPVS--SLTKLQRL 336
Query: 391 QIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLT 423
Y+NK++ S ANLT ++W G NQ++
Sbjct: 337 FFYNNKVSDVSS---LANLTNINWLSAGHNQIS 366
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 136/318 (42%), Gaps = 53/318 (16%)
Query: 231 LQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDL 290
L+NLT L + +++N P L + L L L NN Q T D + NLT+++ L+L
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN--QITDIDPLKNLTNLNRLEL 136
Query: 291 SINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIY 350
S N ++ L S+ LS +++ D+ LE LD+ S+ +
Sbjct: 137 SSNT------ISDISALSGLTSLQ----QLSFSSNQVTDLKPLANLTTLERLDISSNKVS 186
Query: 351 GHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLN--GTL------S 402
L + NL +L NN I + P G L+ L EL + N+L GTL +
Sbjct: 187 D--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLT 242
Query: 403 EFHFAN-----------LTKLSWFRVGGNQLTFEVKHDWIPPF----QLVALGLHNCYVG 447
+ AN LTKL+ ++G NQ++ I P L L L+ +
Sbjct: 243 DLDLANNQISNLAPLSGLTKLTELKLGANQISN------ISPLAGLTALTNLELNENQLE 296
Query: 448 SRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQ 507
P + + K+L YL L + ISDI P+ L +L F N +S+L T
Sbjct: 297 DISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF----SNNKVSDVSSLANLTN 350
Query: 508 LLFLSVNSNNMSGPLPLV 525
+ +LS N +S PL
Sbjct: 351 INWLSAGHNQISDLTPLA 368
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 109/249 (43%), Gaps = 42/249 (16%)
Query: 557 LEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLS 616
L GL L +N + D + NL L+LS+N S ++L +TSL L N+++
Sbjct: 109 LTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVT 164
Query: 617 GKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLP------- 669
P L N T L LD+ N+ V +I + + + LI +NQ P
Sbjct: 165 DLKP--LANLTTLERLDISSNK-VSDISVL--AKLTNLESLIATNNQISDITPLGILTNL 219
Query: 670 -------------KTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYRE 716
T+ L L LDLA+N +S P +S LT + +K G+
Sbjct: 220 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK--LGANQISN 275
Query: 717 ILPLVSL-----LDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALES 771
I PL L L+++ N E +S ++NLK L + FN + P + ++ L+
Sbjct: 276 ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 331
Query: 772 VDFSVNQLS 780
+ FS N++S
Sbjct: 332 LFFSNNKVS 340
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 127 IGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDL 186
+ + +L+ L+ S Q + P L NL+ L+ LD+SSN V ++ L+ L+ LE L
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSN--KVSDISVLAKLTNLESLIA 202
Query: 187 RSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNH 246
+ +S + + TN L EL L+ L TLAS LT+L LDL +N
Sbjct: 203 TNNQISDITPLGILTN----LDELSLNGNQLKDIGTLAS--------LTNLTDLDLANNQ 250
Query: 247 FNSSIP-DWLYKFSPLE 262
++ P L K + L+
Sbjct: 251 ISNLAPLSGLTKLTELK 267
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 137/572 (23%), Positives = 209/572 (36%), Gaps = 102/572 (17%)
Query: 129 SMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRS 188
S L+ L+LS + + +LS L L L+ N + + SGLS L+ L
Sbjct: 74 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 133
Query: 189 VNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFN 248
NL+ ++ + L +L EL +++ + F +P NLT+L+HLDL SN
Sbjct: 134 TNLASLENFPIGH--LKTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSN--- 183
Query: 249 SSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFC 308
K + C +LR + + L P +
Sbjct: 184 --------KIQSIYCTDLR----------------VLHQMPLLNLSLDLSLNPMNFIQPG 219
Query: 309 NLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNL 368
K + L + L L++ C+ GL L++ LG+FRN L
Sbjct: 220 AFKEIRLHKLTLRNNFDS-LNVMKTCI-QGLAGLEVHRLV--------LGEFRNEGNLEK 269
Query: 369 ANNS----IVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTF 424
+ S + L E F L D L+G + F+ LT +S F + +T
Sbjct: 270 FDKSALEGLCNLTIEEF-------RLAYLDYYLDGIIDLFNC--LTNVSSFSLVS--VTI 318
Query: 425 EVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFP--------- 475
E D+ F L L NC G +FP K L+ L +++ + F
Sbjct: 319 ERVKDFSYNFGWQHLELVNCKFG-QFPTL--KLKSLKRLTFTSNKGGNAFSEVDLPSLEF 375
Query: 476 -------IRFLKSASQ-------LKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSG- 520
+ F SQ LK+LD+ N SN QL L +N+
Sbjct: 376 LDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 435
Query: 521 ---PLPLVSSNLVYLDFSNN----SFSGSISHFLCYRVNETKSLEGLKLTDNYLQGE-IP 572
+ L NL+YLD S+ +F+G N SLE LK+ N Q +P
Sbjct: 436 SEFSVFLSLRNLIYLDISHTHTRVAFNGIF--------NGLSSLEVLKMAGNSFQENFLP 487
Query: 573 DCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASL 632
D + +NL L LS + P + S++SL L + N K +L L
Sbjct: 488 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 547
Query: 633 DVDENEFVGNIPTWFGERFSRMLVLILRSNQF 664
D N + + S + L L N F
Sbjct: 548 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%)
Query: 116 NDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWL 175
N FQ +P +RNL +L+LS Q + P +LS LQ L++S N + + +
Sbjct: 479 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 538
Query: 176 SGLSFLEHLD 185
L+ L+ LD
Sbjct: 539 KCLNSLQVLD 548
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 120/486 (24%), Positives = 203/486 (41%), Gaps = 90/486 (18%)
Query: 233 NLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGT-ISDAIGNLTSVSWLDLS 291
+L SL+HLDL NH +S W S L+ LNL N Q ++ NLT++ L +
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131
Query: 292 INIGLQGRIPR------SMANFCNLKSVNLRGV------------HLSQEISE---ILDI 330
N+ I R + N +K+++LR HL+ +SE +L+I
Sbjct: 132 -NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI 190
Query: 331 FSGCVSNGLESLDMRSSSI----YGHL-TDQLGQ------FRNLVTLNLANNSIVGLIPE 379
F+ +S+ + L++R +++ + L D++ FR V + + N ++ L+
Sbjct: 191 FADILSS-VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL-- 247
Query: 380 SFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVAL 439
+ L E++ D LNG L +F+ + +S G T ++ IP F L
Sbjct: 248 --RYILELSEVEFDDCTLNG-LGDFNPSESDVVSEL---GKVETVTIRRLHIPQFYLF-- 299
Query: 440 GLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKI 499
Y S L K + + NS++ + P F + L+FLD+ N +
Sbjct: 300 -----YDLSTVYSLLEKVKR---ITVENSKVF-LVPCSFSQHLKSLEFLDLSENLM---V 347
Query: 500 SNLTKNT---------QLLFLSVN---SNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFL 547
KN+ Q L LS N S +G + L NL LD S N+F H +
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-----HPM 402
Query: 548 CYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNN---KFSGNLPNSLGSITS 604
+ + L L+ ++ + C Q L+VL +SNN FS LP
Sbjct: 403 PDSCQWPEKMRFLNLSSTGIRV-VKTCIP--QTLEVLDVSNNNLDSFSLFLPR------- 452
Query: 605 LVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQF 664
L LY+ +N+L SL L + + N+ + ++P +R + + + L +N +
Sbjct: 453 LQELYISRNKLKTLPDASL--FPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 509
Query: 665 HGPLPK 670
P+
Sbjct: 510 DCSCPR 515
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 118/524 (22%), Positives = 196/524 (37%), Gaps = 98/524 (18%)
Query: 128 GSMR---NLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHL 184
G +R NL+ L L ++ + +L L+ LDLS N+L + W LS L++L
Sbjct: 44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103
Query: 185 DLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDS 244
+L + L T+ P+L L+ + + T + LTSL L++ +
Sbjct: 104 NL----MGNPYQTLGVTSLFPNLTNLQ--TLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157
Query: 245 NHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDL-SINIGLQGRIPRS 303
+ L + L L + + L+SV +L+L N+ P
Sbjct: 158 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLP 217
Query: 304 MANFCN-LKSVNLRGVHLSQE-ISEILDI-----------FSGCVSNGLESLDMRSSSIY 350
+ + +K + RG L+ E +E+L + F C NGL + S +
Sbjct: 218 VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVV 277
Query: 351 GHL------------TDQLGQFRNLVTLN---------LANNSIVGLIPESFGQLSTLRE 389
L Q F +L T+ NS V L+P SF Q L+
Sbjct: 278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQ--HLKS 335
Query: 390 LQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSR 449
L+ D N + E+ + K +W P Q + L
Sbjct: 336 LEFLDLSENLMVEEYLKNSACKGAW-----------------PSLQTLVL---------- 368
Query: 450 FPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLL 509
SQ HL+ + + +I L + L LD+ N FH + ++
Sbjct: 369 ------SQNHLRSMQ----KTGEI-----LLTLKNLTSLDISRNTFHPMPDSCQWPEKMR 413
Query: 510 FLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQG 569
FL+++S + + L LD SNN+ S S FL L+ L ++ N L+
Sbjct: 414 FLNLSSTGIRVVKTCIPQTLEVLDVSNNNL-DSFSLFL-------PRLQELYISRNKLKT 465
Query: 570 EIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKN 613
+PD + + L V+K+S N+ +TSL ++L N
Sbjct: 466 -LPDASL-FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 89/219 (40%), Gaps = 35/219 (15%)
Query: 548 CYRVNETKSLEGLKLTDNYLQGEI---PDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITS 604
C KSLE L L++N + E C ++ +L+ L LS N
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN--------------- 371
Query: 605 LVWLYLRKNRLSGKIPISLKNCTALASLDVDENEF--VGNIPTWFGERFSRMLVLILRSN 662
+LR + +G+I ++LKN L SLD+ N F + + W +M L L S
Sbjct: 372 ----HLRSMQKTGEILLTLKN---LTSLDISRNTFHPMPDSCQW----PEKMRFLNLSST 420
Query: 663 QFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVS 722
G C L++LD+++NNL + + L + ++ ++ + P++
Sbjct: 421 ---GIRVVKTCIPQTLEVLDVSNNNL-DSFSLFLPRLQELYISRNKLKTLPDASLFPVLL 476
Query: 723 LLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPE 761
++ ISRN L +LQ I N + P
Sbjct: 477 VMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 83/204 (40%), Gaps = 22/204 (10%)
Query: 562 LTDNYLQG----EIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSG 617
LT YL G E+P + NL+VL LS+N+ + +LP LGS L + Y N ++
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT- 306
Query: 618 KIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAF 677
+P N L L V+ N E+ L+ LR N+ PLP + F
Sbjct: 307 TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH---ERRF 363
Query: 678 LQI-LDLADNNLSGAIPKCISNLTGMVTVKSFT------------GSVVYREILPLVSLL 724
++I D ++ + +L + ++FT +YR
Sbjct: 364 IEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYATPKMYRYTPSWALSW 423
Query: 725 DISRNNFSGEILSEVTNLKALQSI 748
D RN +ILS ++L LQ +
Sbjct: 424 DYRRNKLKEQILSYDSDLLCLQEV 447
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 121/492 (24%), Positives = 203/492 (41%), Gaps = 96/492 (19%)
Query: 230 GLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGT-ISDAIGNLTSVSWL 288
+L SL+HLDL NH +S W S L+ LNL N Q ++ NLT++ L
Sbjct: 95 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 154
Query: 289 DLSINIGLQGRIPR------SMANFCNLKSVNLRGV------------HLSQEISE---I 327
+ N+ I R + N +K+++LR HL+ +SE +
Sbjct: 155 RIG-NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 213
Query: 328 LDIFSGCVSNGLESLDMRSSSI----YGHL-TDQLGQ------FRNLVTLNLANNSIVGL 376
L+IF+ +S+ + L++R +++ + L D++ FR V + + N ++ L
Sbjct: 214 LEIFADILSS-VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 272
Query: 377 IPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQL 436
+ + L E++ D LNG L +F+ + +S G T ++ IP F L
Sbjct: 273 L----RYILELSEVEFDDCTLNG-LGDFNPSESDVVSEL---GKVETVTIRRLHIPQFYL 324
Query: 437 VALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFH 496
Y S L K + + NS++ + P F + L+FLD+ N
Sbjct: 325 F-------YDLSTVYSLLEKVKR---ITVENSKVF-LVPCSFSQHLKSLEFLDLSENLM- 372
Query: 497 GKISNLTKNT---------QLLFLSVN---SNNMSGPLPLVSSNLVYLDFSNNSFSGSIS 544
+ KN+ Q L LS N S +G + L NL LD S N+F
Sbjct: 373 --VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF----- 425
Query: 545 HFLCYRVNETKSLEGLKLTDN---YLQGEIPDCWMSYQNLKVLKLSNN---KFSGNLPNS 598
H + + + L L+ ++ IP Q L+VL +SNN FS LP
Sbjct: 426 HPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP------QTLEVLDVSNNNLDSFSLFLPR- 478
Query: 599 LGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLI 658
L LY+ +N+L SL L + + N+ + ++P +R + + +
Sbjct: 479 ------LQELYISRNKLKTLPDASL--FPVLLVMKIASNQ-LKSVPDGIFDRLTSLQKIW 529
Query: 659 LRSNQFHGPLPK 670
L +N + P+
Sbjct: 530 LHTNPWDCSCPR 541
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 117/524 (22%), Positives = 197/524 (37%), Gaps = 98/524 (18%)
Query: 128 GSMR---NLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHL 184
G +R NL+ L L ++ + +L L+ LDLS N+L + W LS L++L
Sbjct: 70 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 129
Query: 185 DLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDS 244
+L + L T+ P+L L+ + + T + LTSL L++ +
Sbjct: 130 NL----MGNPYQTLGVTSLFPNLTNLQ--TLRIGNVETFSEIRRIDFAGLTSLNELEIKA 183
Query: 245 NHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDL-SINIGLQGRIPRS 303
+ L + L L + + L+SV +L+L N+ P
Sbjct: 184 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLP 243
Query: 304 MANFCN-LKSVNLRGVHLSQE-ISEILDI-----------FSGCVSNGLESLDMRSSSIY 350
+ + +K + RG L+ E +E+L + F C NGL + S +
Sbjct: 244 VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVV 303
Query: 351 GHL------------TDQLGQFRNLVTLN---------LANNSIVGLIPESFGQLSTLRE 389
L Q F +L T+ NS V L+P SF Q L+
Sbjct: 304 SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQ--HLKS 361
Query: 390 LQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSR 449
L+ D N + E+ + K +W P Q + L
Sbjct: 362 LEFLDLSENLMVEEYLKNSACKGAW-----------------PSLQTLVL---------- 394
Query: 450 FPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLL 509
SQ HL+ + + +I L + L LD+ N FH + ++
Sbjct: 395 ------SQNHLRSMQ----KTGEI-----LLTLKNLTSLDISRNTFHPMPDSCQWPEKMR 439
Query: 510 FLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQG 569
FL+++S + + L LD SNN+ S S FL L+ L ++ N L+
Sbjct: 440 FLNLSSTGIRVVKTCIPQTLEVLDVSNNNL-DSFSLFL-------PRLQELYISRNKLKT 491
Query: 570 EIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKN 613
+PD + + L V+K+++N+ +TSL ++L N
Sbjct: 492 -LPDASL-FPVLLVMKIASNQLKSVPDGIFDRLTSLQKIWLHTN 533
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 135/572 (23%), Positives = 208/572 (36%), Gaps = 102/572 (17%)
Query: 129 SMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRS 188
S L+ L+LS + + +LS L L L+ N + + SGLS L+ L
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 189 VNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFN 248
NL+ ++ + L +L EL +++ + F +P NLT+L+HLDL SN
Sbjct: 110 TNLASLENFPIGH--LKTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSN--- 159
Query: 249 SSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFC 308
K + C +LR + + L P +
Sbjct: 160 --------KIQSIYCTDLR----------------VLHQMPLLNLSLDLSLNPMNFIQPG 195
Query: 309 NLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNL 368
K + L + L L++ C+ GL L++ LG+FRN L
Sbjct: 196 AFKEIRLHKLTLRNNFDS-LNVMKTCIQ-GLAGLEVHRLV--------LGEFRNEGNLEK 245
Query: 369 ANNS----IVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTF 424
+ S + L E F L D L+ + F+ LT +S F + +T
Sbjct: 246 FDKSALEGLCNLTIEEF-------RLAYLDYYLDDIIDLFNC--LTNVSSFSLVS--VTI 294
Query: 425 EVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIF------PIRF 478
E D+ F L L NC G +FP K L+ L +++ + F + F
Sbjct: 295 ERVKDFSYNFGWQHLELVNCKFG-QFPTL--KLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351
Query: 479 LK-----------------SASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSG- 520
L + LK+LD+ N SN QL L +N+
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411
Query: 521 ---PLPLVSSNLVYLDFSNN----SFSGSISHFLCYRVNETKSLEGLKLTDNYLQGE-IP 572
+ L NL+YLD S+ +F+G N SLE LK+ N Q +P
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIF--------NGLSSLEVLKMAGNSFQENFLP 463
Query: 573 DCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASL 632
D + +NL L LS + P + S++SL L + N K +L L
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523
Query: 633 DVDENEFVGNIPTWFGERFSRMLVLILRSNQF 664
D N + + S + L L N F
Sbjct: 524 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%)
Query: 116 NDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWL 175
N FQ +P +RNL +L+LS Q + P +LS LQ L++S N + + +
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514
Query: 176 SGLSFLEHLD 185
L+ L+ LD
Sbjct: 515 KCLNSLQVLD 524
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 110/266 (41%), Gaps = 38/266 (14%)
Query: 151 LGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLEL 210
L L +LQ LDLS + + + L L L HL + +NLS + +L
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQ-LKNLRHL--QYLNLSYNEPLGLEDQAFKECPQL 401
Query: 211 RLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNS 270
L + + H A P QNL L+ L+L ++S L L LNL+ NS
Sbjct: 402 ELLDVAFTHLHVKAPHSP--FQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNS 459
Query: 271 LQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDI 330
Q G+++ + L + G + + + CNL S++ + H + ++
Sbjct: 460 FQD------GSISKTNLLQMV------GSLEILILSSCNLLSIDQQAFHGLRNVNH---- 503
Query: 331 FSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLREL 390
LD+ +S+ G D L + L LN+A+N+I + P LS +
Sbjct: 504 -----------LDLSHNSLTGDSMDALSHLKGLY-LNMASNNIRIIPPHLLPALSQQSII 551
Query: 391 QIYDNKLNGTLSEFHFANLTKLSWFR 416
+ N L+ T S HF ++W++
Sbjct: 552 NLSHNPLDCTCSNIHF-----ITWYK 572
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 88/387 (22%), Positives = 151/387 (39%), Gaps = 50/387 (12%)
Query: 406 FANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNL 465
F + +L+ + GN L F + P L L L + + +H+ ++L+ L+L
Sbjct: 76 FQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHL 135
Query: 466 LNSRISDI-FPIRFLKSASQLKFLDVGLNQFH---GKISNLTKNTQLLFLSVNSNNMSGP 521
++ IS I P F LK LD N H K +N + L L+ N N++ G
Sbjct: 136 GSNHISSINLPENF--PTQNLKVLDFQNNAIHYISRKDTNSLEQATNLSLNFNGNDIKGI 193
Query: 522 LPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNL 581
P + F + F GS++ F+ ++ + +L+ L L G D Y
Sbjct: 194 EP---GAFISKIFQSLKFGGSLNLFIIFKGLQNSTLQSLWL------GTFEDTDDQY--- 241
Query: 582 KVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVG 641
L++ F G S+ SI L+K+R S + + T + LD+ G
Sbjct: 242 ----LTSATFEGLCDMSVESIN------LQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG 291
Query: 642 NIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTG 701
+P+ E + + L+L +N F +C + L D + G + K
Sbjct: 292 -LPSGI-EGMNSLKKLVLNANSF-----DQLCQINAASFPSLRDLYIKGNMRK------- 337
Query: 702 MVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILS--EVTNLKALQSINFSFNTFTGRI 759
E L + LD+S ++ ++ NL+ LQ +N S+N G
Sbjct: 338 ------LDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLE 391
Query: 760 PESIGTMRALESVDFSVNQLSGEIPQS 786
++ LE +D + L + P S
Sbjct: 392 DQAFKECPQLELLDVAFTHLHVKAPHS 418
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 37/195 (18%)
Query: 127 IGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVD---------------- 170
+ ++R+L+YLNLS + +G+ L+ LD++ +L+V
Sbjct: 371 LKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLN 430
Query: 171 ---------NVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLP---SLLELRLSNCSLH 218
N L+GL L HL+L+ + S + TN L SL L LS+C+
Sbjct: 431 LSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGS--ISKTNLLQMVGSLEILILSSCN-- 486
Query: 219 HFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDA 278
L S + L ++ HLDL N D L L LN+ +N+++
Sbjct: 487 ----LLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLY-LNMASNNIRIIPPHL 541
Query: 279 IGNLTSVSWLDLSIN 293
+ L+ S ++LS N
Sbjct: 542 LPALSQQSIINLSHN 556
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 91/209 (43%), Gaps = 37/209 (17%)
Query: 214 NCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQG 273
+CS + S IP K LDL SN +S ++ + L L L +N LQ
Sbjct: 22 DCSSKKLTAIPSNIP------ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT 75
Query: 274 TISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSG 333
+ L ++ L ++ N LQ +P + F L VNL + L +
Sbjct: 76 LPAGIFKELKNLETLWVTDN-KLQA-LP--IGVFDQL--VNLAELRLDR----------- 118
Query: 334 CVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIY 393
N L+SL R ++ LT L L+L N + L F +L++L+EL++Y
Sbjct: 119 ---NQLKSLPPR---VFDSLT-------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165
Query: 394 DNKLNGTLSEFHFANLTKLSWFRVGGNQL 422
+N+L + E F LT+L ++ NQL
Sbjct: 166 NNQLK-RVPEGAFDKLTELKTLKLDNNQL 193
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 6/170 (3%)
Query: 525 VSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVL 584
+ ++ LD +N S S+ +R+ + L L L DN LQ + +NL+ L
Sbjct: 35 IPADTKKLDLQSNKLS-SLPSKAFHRLTK---LRLLYLNDNKLQTLPAGIFKELKNLETL 90
Query: 585 KLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIP 644
+++NK + +L L L +N+L P + T L L + NE + ++P
Sbjct: 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLP 149
Query: 645 TWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPK 694
++ + + L L +NQ L L+ L L DNN +P+
Sbjct: 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL-DNNQLKRVPE 198
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 227 IPRGL-QNLTSLKHLDLDSNHFNSSIPDWLY-KFSPLECLNLRNNSLQGTISDAIGNLTS 284
+P+G+ LTSLK L L +N +P+ + K + L+ L L NN L+ A +L
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206
Query: 285 VSWLDLSIN 293
+ L L N
Sbjct: 207 LKMLQLQEN 215
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 152/562 (27%), Positives = 215/562 (38%), Gaps = 103/562 (18%)
Query: 220 FPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKF-SPLECLNLRNNSLQGTISDA 278
F T++ P Q L LK L+L N S + D + F + L L+L +NS+Q ++
Sbjct: 68 FNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDKTFAFCTNLTELHLMSNSIQKIKNNP 126
Query: 279 IGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNG 338
++ LDLS N GL + NL+ + L + SE LDIF+ +
Sbjct: 127 FVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN---SS 182
Query: 339 LESLDMRSSSI-------YGHLTDQLGQFRNLVTL----------NLANNSIVGLIPESF 381
L+ L++ S+ I + + G F N V L LAN SI L S
Sbjct: 183 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL-SLSN 241
Query: 382 GQLSTLRELQIYDNKLNGTLSEFHFANLTKLSW----FRVGGNQLTFEVKHDWIPPFQLV 437
QLST N T + NLT L V GN W+P +
Sbjct: 242 SQLSTTS---------NTTFLGLKWTNLTMLDLSYNNLNVVGND-----SFAWLPQLEYF 287
Query: 438 ALGLHNCYVGSRFPQWLHSQKHLQYLNLLNS------------RISDIFPIRFLKSASQL 485
L +N + F LH +++YLNL S +I D F ++LK L
Sbjct: 288 FLEYNN--IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD-FSFQWLKCLEHL 344
Query: 486 KFLDVGLNQFHGKISNL-TKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSN----NSFS 540
D N G SN+ T L +LS+ SN+ + L + V L S N
Sbjct: 345 NMED---NDIPGIKSNMFTGLINLKYLSL-SNSFTSLRTLTNETFVSLAHSPLHILNLTK 400
Query: 541 GSISHFLCYRVNETKSLEGLKLTDNYLQGEIP-DCWMSYQNLKVLKLSNNKFSGNLPNSL 599
IS + LE L L N + E+ W +N+ + LS NK+ NS
Sbjct: 401 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 460
Query: 600 GSITSLVWLYLR----KNRLSGKIPIS-LKNCT---------------------ALASLD 633
+ SL L LR KN S P L+N T L LD
Sbjct: 461 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILD 520
Query: 634 VDENEFVG-------NIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADN 686
+ N P +F + S + +L L SN F + DL L+I+DL N
Sbjct: 521 LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 580
Query: 687 NLSGAIPKCISNLTGMVTVKSF 708
NL +P + N V++KS
Sbjct: 581 NL-NTLPASVFN--NQVSLKSL 599
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 120/478 (25%), Positives = 192/478 (40%), Gaps = 110/478 (23%)
Query: 129 SMRNLRYLN-----LSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYV---DNVWWLSGLSF 180
S+RNL N S+T F+G+ ++L LDLS N L V D+ WL L +
Sbjct: 233 SIRNLSLSNSQLSTTSNTTFLGL------KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY 286
Query: 181 -------LEHL---------DLRSVNLSKA-SDWLMATNTLPSLLELRLS--NCSLHHFP 221
++HL ++R +NL ++ + ++ +LP + + C L H
Sbjct: 287 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC-LEHLN 345
Query: 222 TLASPIPRGLQN----LTSLKHLDLDSNHFNS--SIPDWLY---KFSPLECLNLRNNSLQ 272
+ IP N L +LK+L L SN F S ++ + + SPL LNL N +
Sbjct: 346 MEDNDIPGIKSNMFTGLINLKYLSL-SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 404
Query: 273 GTISDAIGNLTSVSWLDLSIN-IG--LQGRIPRSMANFCNLKSVNLRGVHLSQEISEILD 329
SDA L + LDL +N IG L G+ R + N+ ++LS L
Sbjct: 405 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE--------NIFEIYLSYNKYLQLT 456
Query: 330 IFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRE 389
S + L+ L +R ++ ++ F+ L L + + S + + L L +
Sbjct: 457 RNSFALVPSLQRLMLRRVAL-KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 515
Query: 390 LQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSR 449
L+I D + N + AN GG P + L L
Sbjct: 516 LEILDLQHNNLARLWKHAN--------PGG------------PIYFLKGLS--------- 546
Query: 450 FPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQ--------FHGKISN 501
HL LNL ++ +I P+ K +LK +D+GLN F+ ++S
Sbjct: 547 ---------HLHILNLESNGFDEI-PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 596
Query: 502 LTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFS---GSISHFLCYRVNETKS 556
+ N Q ++ + GP NL LD N F SI+ F+ + +NET +
Sbjct: 597 KSLNLQKNLITSVEKKVFGP---AFRNLTELDMRFNPFDCTCESIAWFVNW-INETHT 650
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 152/562 (27%), Positives = 215/562 (38%), Gaps = 103/562 (18%)
Query: 220 FPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKF-SPLECLNLRNNSLQGTISDA 278
F T++ P Q L LK L+L N S + D + F + L L+L +NS+Q ++
Sbjct: 63 FNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDKTFAFCTNLTELHLMSNSIQKIKNNP 121
Query: 279 IGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNG 338
++ LDLS N GL + NL+ + L + SE LDIF+ +
Sbjct: 122 FVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN---SS 177
Query: 339 LESLDMRSSSI-------YGHLTDQLGQFRNLVTL----------NLANNSIVGLIPESF 381
L+ L++ S+ I + + G F N V L LAN SI L S
Sbjct: 178 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL-SLSN 236
Query: 382 GQLSTLRELQIYDNKLNGTLSEFHFANLTKLSW----FRVGGNQLTFEVKHDWIPPFQLV 437
QLST N T + NLT L V GN W+P +
Sbjct: 237 SQLSTTS---------NTTFLGLKWTNLTMLDLSYNNLNVVGND-----SFAWLPQLEYF 282
Query: 438 ALGLHNCYVGSRFPQWLHSQKHLQYLNLLNS------------RISDIFPIRFLKSASQL 485
L +N + F LH +++YLNL S +I D F ++LK L
Sbjct: 283 FLEYNN--IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD-FSFQWLKCLEHL 339
Query: 486 KFLDVGLNQFHGKISNL-TKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSN----NSFS 540
D N G SN+ T L +LS+ SN+ + L + V L S N
Sbjct: 340 NMED---NDIPGIKSNMFTGLINLKYLSL-SNSFTSLRTLTNETFVSLAHSPLHILNLTK 395
Query: 541 GSISHFLCYRVNETKSLEGLKLTDNYLQGEIP-DCWMSYQNLKVLKLSNNKFSGNLPNSL 599
IS + LE L L N + E+ W +N+ + LS NK+ NS
Sbjct: 396 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 455
Query: 600 GSITSLVWLYLR----KNRLSGKIPIS-LKNCT---------------------ALASLD 633
+ SL L LR KN S P L+N T L LD
Sbjct: 456 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILD 515
Query: 634 VDENEFVG-------NIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADN 686
+ N P +F + S + +L L SN F + DL L+I+DL N
Sbjct: 516 LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 575
Query: 687 NLSGAIPKCISNLTGMVTVKSF 708
NL +P + N V++KS
Sbjct: 576 NL-NTLPASVFN--NQVSLKSL 594
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 120/478 (25%), Positives = 192/478 (40%), Gaps = 110/478 (23%)
Query: 129 SMRNLRYLN-----LSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYV---DNVWWLSGLSF 180
S+RNL N S+T F+G+ ++L LDLS N L V D+ WL L +
Sbjct: 228 SIRNLSLSNSQLSTTSNTTFLGL------KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY 281
Query: 181 -------LEHL---------DLRSVNLSKA-SDWLMATNTLPSLLELRLS--NCSLHHFP 221
++HL ++R +NL ++ + ++ +LP + + C L H
Sbjct: 282 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC-LEHLN 340
Query: 222 TLASPIPRGLQN----LTSLKHLDLDSNHFNS--SIPDWLY---KFSPLECLNLRNNSLQ 272
+ IP N L +LK+L L SN F S ++ + + SPL LNL N +
Sbjct: 341 MEDNDIPGIKSNMFTGLINLKYLSL-SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 399
Query: 273 GTISDAIGNLTSVSWLDLSIN-IG--LQGRIPRSMANFCNLKSVNLRGVHLSQEISEILD 329
SDA L + LDL +N IG L G+ R + N+ ++LS L
Sbjct: 400 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE--------NIFEIYLSYNKYLQLT 451
Query: 330 IFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRE 389
S + L+ L +R ++ ++ F+ L L + + S + + L L +
Sbjct: 452 RNSFALVPSLQRLMLRRVAL-KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 510
Query: 390 LQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSR 449
L+I D + N + AN GG P + L L
Sbjct: 511 LEILDLQHNNLARLWKHAN--------PGG------------PIYFLKGLS--------- 541
Query: 450 FPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQ--------FHGKISN 501
HL LNL ++ +I P+ K +LK +D+GLN F+ ++S
Sbjct: 542 ---------HLHILNLESNGFDEI-PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 591
Query: 502 LTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFS---GSISHFLCYRVNETKS 556
+ N Q ++ + GP NL LD N F SI+ F+ + +NET +
Sbjct: 592 KSLNLQKNLITSVEKKVFGP---AFRNLTELDMRFNPFDCTCESIAWFVNW-INETHT 645
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 152/562 (27%), Positives = 215/562 (38%), Gaps = 103/562 (18%)
Query: 220 FPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKF-SPLECLNLRNNSLQGTISDA 278
F T++ P Q L LK L+L N S + D + F + L L+L +NS+Q ++
Sbjct: 58 FNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDKTFAFCTNLTELHLMSNSIQKIKNNP 116
Query: 279 IGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNG 338
++ LDLS N GL + NL+ + L + SE LDIF+ +
Sbjct: 117 FVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN---SS 172
Query: 339 LESLDMRSSSI-------YGHLTDQLGQFRNLVTL----------NLANNSIVGLIPESF 381
L+ L++ S+ I + + G F N V L LAN SI L S
Sbjct: 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL-SLSN 231
Query: 382 GQLSTLRELQIYDNKLNGTLSEFHFANLTKLSW----FRVGGNQLTFEVKHDWIPPFQLV 437
QLST N T + NLT L V GN W+P +
Sbjct: 232 SQLSTTS---------NTTFLGLKWTNLTMLDLSYNNLNVVGND-----SFAWLPQLEYF 277
Query: 438 ALGLHNCYVGSRFPQWLHSQKHLQYLNLLNS------------RISDIFPIRFLKSASQL 485
L +N + F LH +++YLNL S +I D F ++LK L
Sbjct: 278 FLEYNN--IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD-FSFQWLKCLEHL 334
Query: 486 KFLDVGLNQFHGKISNL-TKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSN----NSFS 540
D N G SN+ T L +LS+ SN+ + L + V L S N
Sbjct: 335 NMED---NDIPGIKSNMFTGLINLKYLSL-SNSFTSLRTLTNETFVSLAHSPLHILNLTK 390
Query: 541 GSISHFLCYRVNETKSLEGLKLTDNYLQGEIP-DCWMSYQNLKVLKLSNNKFSGNLPNSL 599
IS + LE L L N + E+ W +N+ + LS NK+ NS
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450
Query: 600 GSITSLVWLYLR----KNRLSGKIPIS-LKNCT---------------------ALASLD 633
+ SL L LR KN S P L+N T L LD
Sbjct: 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILD 510
Query: 634 VDENEFVG-------NIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADN 686
+ N P +F + S + +L L SN F + DL L+I+DL N
Sbjct: 511 LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 570
Query: 687 NLSGAIPKCISNLTGMVTVKSF 708
NL +P + N V++KS
Sbjct: 571 NL-NTLPASVFN--NQVSLKSL 589
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 120/478 (25%), Positives = 192/478 (40%), Gaps = 110/478 (23%)
Query: 129 SMRNLRYLN-----LSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYV---DNVWWLSGLSF 180
S+RNL N S+T F+G+ ++L LDLS N L V D+ WL L +
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGL------KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY 276
Query: 181 -------LEHL---------DLRSVNLSKA-SDWLMATNTLPSLLELRLS--NCSLHHFP 221
++HL ++R +NL ++ + ++ +LP + + C L H
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC-LEHLN 335
Query: 222 TLASPIPRGLQN----LTSLKHLDLDSNHFNS--SIPDWLY---KFSPLECLNLRNNSLQ 272
+ IP N L +LK+L L SN F S ++ + + SPL LNL N +
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSL-SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394
Query: 273 GTISDAIGNLTSVSWLDLSIN-IG--LQGRIPRSMANFCNLKSVNLRGVHLSQEISEILD 329
SDA L + LDL +N IG L G+ R + N+ ++LS L
Sbjct: 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE--------NIFEIYLSYNKYLQLT 446
Query: 330 IFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRE 389
S + L+ L +R ++ ++ F+ L L + + S + + L L +
Sbjct: 447 RNSFALVPSLQRLMLRRVAL-KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505
Query: 390 LQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSR 449
L+I D + N + AN GG P + L L
Sbjct: 506 LEILDLQHNNLARLWKHAN--------PGG------------PIYFLKGLS--------- 536
Query: 450 FPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQ--------FHGKISN 501
HL LNL ++ +I P+ K +LK +D+GLN F+ ++S
Sbjct: 537 ---------HLHILNLESNGFDEI-PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586
Query: 502 LTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFS---GSISHFLCYRVNETKS 556
+ N Q ++ + GP NL LD N F SI+ F+ + +NET +
Sbjct: 587 KSLNLQKNLITSVEKKVFGP---AFRNLTELDMRFNPFDCTCESIAWFVNW-INETHT 640
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%)
Query: 116 NDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWL 175
N FQ +P +RNL +L+LS Q + P +LS LQ L++S N + + +
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219
Query: 176 SGLSFLEHLD 185
L+ L+ LD
Sbjct: 220 KCLNSLQVLD 229
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 74/192 (38%), Gaps = 17/192 (8%)
Query: 482 ASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSG----PLPLVSSNLVYLDFSNN 537
+ LK+LD+ N SN QL L +N+ + L NL+YLD S+
Sbjct: 77 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136
Query: 538 ----SFSGSISHFLCYRVNETKSLEGLKLTDNYLQGE-IPDCWMSYQNLKVLKLSNNKFS 592
+F+G N SLE LK+ N Q +PD + +NL L LS +
Sbjct: 137 HTRVAFNGIF--------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188
Query: 593 GNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFS 652
P + S++SL L + N K +L LD N + + S
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248
Query: 653 RMLVLILRSNQF 664
+ L L N F
Sbjct: 249 SLAFLNLTQNDF 260
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 137/555 (24%), Positives = 214/555 (38%), Gaps = 109/555 (19%)
Query: 153 NLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRL 212
NL +L+ LDL S+ +Y + GL L L L LS A L +L L L
Sbjct: 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130
Query: 213 SN---CSLHHFPTLASPIPRGLQNLTSLKHLDLDSNH------------------FNSSI 251
S SL+ P+ L SLK +D SN F S
Sbjct: 131 SKNQIRSLYLHPSFGK--------LNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182
Query: 252 PDWLYKFSPLE---CLN-LRNNSLQ-------GTISDAIGNLTSVSWLDLSINIGLQGRI 300
+ LY ++ C+N RN L+ G D GN ++ + ++ L I
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242
Query: 301 PRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQF 360
+ F N+K + + F+G + + LD+ ++ +
Sbjct: 243 MGAGFGFHNIKDPDQ-------------NTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289
Query: 361 RNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGN 420
++L LNLA N I + E+F L L+ L + N L G L +F L K+++ + N
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL-GELYSSNFYGLPKVAYIDLQKN 348
Query: 421 QLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLK 480
+ + D + K L+ L L+ R + + I F+
Sbjct: 349 HIA--IIQD-------------------------QTFKFLEKLQTLDLRDNALTTIHFIP 381
Query: 481 SASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNS-NNMSGPLPLVS-SNLVYLDFSNNS 538
S + FL KI NLT N L+ LS N N+ L+ +L L + N
Sbjct: 382 SIPDI-FLSGNKLVTLPKI-NLTAN--LIHLSENRLENLDILYFLLRVPHLQILILNQNR 437
Query: 539 FSGSISHFLCYRVNETKSLEGLKLTDNYLQ--GEIPDCWMSYQ---NLKVLKLSNNKFSG 593
FS +E SLE L L +N LQ E CW ++ +L+VL L++N +
Sbjct: 438 FSSCSGD---QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494
Query: 594 NLPNSLGSITSLVWLYLRKNRLS----GKIPISLKNCTALASLDVDENEFVGNIPTWFGE 649
P +T+L L L NRL+ +P +L+ LD+ N+ + P +
Sbjct: 495 LPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLE------ILDISRNQLLAPNP----D 544
Query: 650 RFSRMLVLILRSNQF 664
F + VL + N+F
Sbjct: 545 VFVSLSVLDITHNKF 559
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 80/354 (22%), Positives = 132/354 (37%), Gaps = 48/354 (13%)
Query: 339 LESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPES--FGQLSTLRELQIYDNK 396
L LD+ SS IY D +L L L + + + F L L L + N+
Sbjct: 75 LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134
Query: 397 LNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHS 456
+ F L L NQ+ +H+ + P Q L + S L+S
Sbjct: 135 IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTLSFFSLAANS-----LYS 188
Query: 457 QKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLN----QFHGKISNLTKNTQLLFLS 512
+ + + +N P R + L+ LDV N G SN +Q L
Sbjct: 189 RVSVDWGKCMN-------PFRNMV----LEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237
Query: 513 VNSNNMSGPLPLVSSNLVYLDFSNNSFSG---------SISHFLCY----RVNET-KSLE 558
+ + M + D N+F+G +SH + RV ET K L+
Sbjct: 238 LAHHIMGAGFGFHNIK----DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK 293
Query: 559 GLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGK 618
L L N + + + NL+VL LS N ++ + + ++ L+KN ++
Sbjct: 294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353
Query: 619 IPISLKNCTALASLDVDEN-----EFVGNIPTWF--GERFSRMLVLILRSNQFH 665
+ K L +LD+ +N F+ +IP F G + + + L +N H
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIH 407
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 331 FSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLREL 390
F G ++G+++ D+ S I+ L F +L L LA N I + +F L+ L+EL
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKEL 328
Query: 391 QIYDNKL 397
+ N+L
Sbjct: 329 ALDTNQL 335
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 108/273 (39%), Gaps = 33/273 (12%)
Query: 151 LGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLEL 210
L L +LQ LDLS N + + L L L HL +++NLS + + +L
Sbjct: 343 LEKLGNLQTLDLSHNDIEASDCCSLQ-LKNLSHL--QTLNLSHNEPLGLQSQAFKECPQL 399
Query: 211 RLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNS 270
L + + A P QNL L+ L+L ++S L L LNL+ N
Sbjct: 400 ELLDLAFTRLHINAPQSP--FQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNH 457
Query: 271 LQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDI 330
Q G +T + L G + + + C L S++ + H ++S +
Sbjct: 458 FQD------GTITKTNLLQTV------GSLEVLILSSCGLLSIDQQAFHSLGKMSHV--- 502
Query: 331 FSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLREL 390
D+ +S+ D L + + LNLA NSI + P LS +
Sbjct: 503 ------------DLSHNSLTCDSIDSLSHLKG-IYLNLAANSINIISPRLLPILSQQSTI 549
Query: 391 QIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLT 423
+ N L+ T S HF K + ++ G++ T
Sbjct: 550 NLSHNPLDCTCSNIHFLTWYKENLHKLEGSEET 582
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 103/240 (42%), Gaps = 52/240 (21%)
Query: 127 IGSMRNLRYLNLSDTQFVGMIP------PQL-------------------GNLSDLQFLD 161
+ ++ +L+ LNLS + +G+ PQL NL LQ L+
Sbjct: 369 LKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLN 428
Query: 162 LSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATN---TLPSLLELRLSNCSL- 217
L+ +L N L+GL L HL+L+ + + + TN T+ SL L LS+C L
Sbjct: 429 LTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGT--ITKTNLLQTVGSLEVLILSSCGLL 486
Query: 218 ----HHFPTLA----------SPIPRGLQNLTSLK--HLDLDSNHFNSSIPDWLYKFSPL 261
F +L S + +L+ LK +L+L +N N P L S
Sbjct: 487 SIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGIYLNLAANSINIISPRLLPILSQQ 546
Query: 262 ECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLS 321
+NL +N L T S N+ ++W +++ L+G + AN +L+ V L V LS
Sbjct: 547 STINLSHNPLDCTCS----NIHFLTWYKENLH-KLEGSEETTCANPPSLRGVKLSDVKLS 601
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 137/324 (42%), Gaps = 26/324 (8%)
Query: 480 KSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNS-NNMSGPLPLVSSNLVYLDFSNNS 538
KS L + G++ + +N + L+L N +++ P + NL LDF NN+
Sbjct: 102 KSLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNA 161
Query: 539 FSGSISHFLCYRVNETKSLE-GLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLP- 596
H++ + +SLE + L+ N+ + + + + + N + NL
Sbjct: 162 I-----HYISRE--DMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQSLNFGGTPNLSV 214
Query: 597 --NSL-GSITSLVWLYLRKNRLSGKIPISLKN--CT-ALASLDVDENEFVGNIPTWFGER 650
N L S T +WL ++ I ++ C ++ SL++ E+ F T F +
Sbjct: 215 IFNGLQNSTTQSLWLGTFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTF-QC 273
Query: 651 FSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNN------LSGAIPKCISNLTGMVT 704
F+++ L L + G LP + L L+ L L+ N+ +S A +++L
Sbjct: 274 FTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN 332
Query: 705 VKSFTGSVVYREILPLVSLLDISRNNFSGEILS--EVTNLKALQSINFSFNTFTGRIPES 762
VK V E L + LD+S N+ ++ NL LQ++N S N G ++
Sbjct: 333 VKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQA 392
Query: 763 IGTMRALESVDFSVNQLSGEIPQS 786
LE +D + +L PQS
Sbjct: 393 FKECPQLELLDLAFTRLHINAPQS 416
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 73/182 (40%), Gaps = 36/182 (19%)
Query: 532 LDFSNNSFSG-SISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNK 590
L+ + FS S + F C+ L+ L LT +L+G +P LK L LS N
Sbjct: 256 LNLQEHRFSDISSTTFQCF-----TQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNH 309
Query: 591 FSGNLPNSLGSITSLVWLYLRKN---------------------------RLSGKIPISL 623
F S + SL LY+R N S + L
Sbjct: 310 FDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQL 369
Query: 624 KNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKT-ICDLAFLQILD 682
KN + L +L++ NE +G F E ++ +L L + H P++ +L FLQ+L+
Sbjct: 370 KNLSHLQTLNLSHNEPLGLQSQAFKE-CPQLELLDLAFTRLHINAPQSPFQNLHFLQVLN 428
Query: 683 LA 684
L
Sbjct: 429 LT 430
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 332 SGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQ 391
S C +G ++D RS H + G N L L +N I L P F L L+EL
Sbjct: 15 SQCSCSG-TTVDCRSKR---HASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELY 70
Query: 392 IYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTF 424
+ N+L G L F +LT+L+ +G NQLT
Sbjct: 71 LGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTV 102
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 128 GSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLR 187
G N + L L D Q + P +L +L+ L L SN L V L+ L LDL
Sbjct: 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96
Query: 188 SVNLSKASDWLMATNTLPSLLELRLSNC-SLHHFPTLASPIPRGLQNLTSLKHLDLDSNH 246
+ L+ LPS + RL + L + +PRG++ LT L HL LD N
Sbjct: 97 TNQLT----------VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ 146
Query: 247 FNS 249
S
Sbjct: 147 LKS 149
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 580 NLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISL-KNCTALASLDVDENE 638
N ++L L +N+ + P S+ +L LYL N+L G +P+ + + T L LD+ N+
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ 99
Query: 639 FVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIP 693
+P+ +R + L + N+ LP+ I L L L L N L +IP
Sbjct: 100 LT-VLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLK-SIP 151
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 8/107 (7%)
Query: 357 LGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFR 416
G+ +LV L L N + G+ P +F S ++ELQ+ +NK+ +S F L +L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLN 108
Query: 417 VGGNQLTFEVKHDWIPPFQLVALGLH------NCYVGSRFPQWLHSQ 457
+ NQ++ + + L +L L NC++ + F +WL +
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL-AWFAEWLRKK 154
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 599 LGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLI 658
G + LV L L++N+L+G P + + + + L + EN+ + I ++ L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLN 108
Query: 659 LRSNQFHGPLPKTICDLAFLQILDLADN 686
L NQ +P + L L L+LA N
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 128/539 (23%), Positives = 202/539 (37%), Gaps = 101/539 (18%)
Query: 132 NLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNL 191
N+ LNL+ Q + P S L LD N + L L+ L+L+ L
Sbjct: 26 NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL 85
Query: 192 SKASD--WLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNS 249
S+ SD ++ TN L EL L + S+H + +N +L LDL N +S
Sbjct: 86 SQISDQTFVFCTN----LTELDLMSNSIHKIKS------NPFKNQKNLIKLDLSHNGLSS 135
Query: 250 S--------IPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIP 301
+ + + L LR+ L+ +GN +S+ LDLS N L+ P
Sbjct: 136 TKLGTGVQLENLQELLLAKNKILALRSEELE-----FLGN-SSLRKLDLSSN-PLKEFSP 188
Query: 302 RSMANFCNLKSVNLRGVHLSQEISEIL------------------------DIFSGCVSN 337
L ++ L L+ ++E L FSG
Sbjct: 189 GCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWT 248
Query: 338 GLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKL 397
L LD+ ++++ +L L+L N+I L P SF LS LR L +
Sbjct: 249 NLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFT 308
Query: 398 NGTLS--------EFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVG-- 447
++S +F F L L + + N + + + L L L +
Sbjct: 309 KQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQ 368
Query: 448 ----SRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLT 503
F HS L LNL + IS I F QL+ LD+GLN+ K+S
Sbjct: 369 TLTNETFVSLAHSP--LLTLNLTKNHISKIANGTF-SWLGQLRILDLGLNEIEQKLSGQE 425
Query: 504 ----KNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFS--GSISHFLCYRVNETKSL 557
+N ++LS N YL S +SF+ S+ + RV +L
Sbjct: 426 WRGLRNIFEIYLSYNK---------------YLQLSTSSFALVPSLQRLMLRRV----AL 466
Query: 558 EGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLS 616
+ + ++ P + +NL +L LSNN + + L + +L L + N L+
Sbjct: 467 KNVDIS--------PSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLA 517
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 111/272 (40%), Gaps = 38/272 (13%)
Query: 151 LGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLEL 210
L NL +L+ LDLS + + + L L L HL +S+NLS + T +L
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQ-LRNLSHL--QSLNLSYNEPLSLKTEAFKECPQL 402
Query: 211 RLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNS 270
L + + + P QNL LK L+L + + S L+ LNL+ N
Sbjct: 403 ELLDLAFTRLKVKDAQSP--FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460
Query: 271 LQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDI 330
GN+ + L GR+ + +FC+L S++ + ++ +
Sbjct: 461 FPK------GNIQKTNSLQT------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508
Query: 331 FSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLREL 390
+ S+ +E+L S + G + LNLA+N I ++P LS R +
Sbjct: 509 HNRLTSSSIEAL----SHLKG------------IYLNLASNHISIILPSLLPILSQQRTI 552
Query: 391 QIYDNKLNGTLSEFHFANLTKLSWFRVGGNQL 422
+ N L+ T S +F L W++ +L
Sbjct: 553 NLRQNPLDCTCSNIYF-----LEWYKENMQKL 579
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 128/285 (44%), Gaps = 19/285 (6%)
Query: 116 NDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWL 175
ND G++ F ++ + LN TQ + +I L N S +Q L L + D
Sbjct: 189 NDIAGIEPGAFDSAV--FQSLNFGGTQNLLVIFKGLKN-STIQSLWLGTFEDMDDEDISP 245
Query: 176 SGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLT 235
+ L + + S+NL K + +++NT L+ + + H S +P GL L+
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL----SELPSGLVGLS 301
Query: 236 SLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTI-SDAIGNLTSVSWLDLS-IN 293
+LK L L +N F + F L L+++ N+ + + + + NL ++ LDLS +
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361
Query: 294 IGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHL 353
I + N +L+S+NL ++ +S + F C LE LD+ + + +
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLS---YNEPLSLKTEAFKECPQ--LELLDLAFTRL--KV 414
Query: 354 TDQLGQFRNLVTLNLAN--NSIVGLIPES-FGQLSTLRELQIYDN 395
D F+NL L + N +S++ + E F L L+ L + N
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 100/233 (42%), Gaps = 28/233 (12%)
Query: 187 RSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNH 246
R +NL + ++ N+ L L + S +H T+ GL NL +L+ D N
Sbjct: 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD---NR 123
Query: 247 FNSSIPDWLYKF-SPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMA 305
++IP+ + + S L+ L LRNN ++ S A + S+ LDL L +
Sbjct: 124 L-TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182
Query: 306 NFCNLKSVNLRGVHLSQEISEI--------LDI------------FSGCVSNGLESLDMR 345
NL+ +NL +L +EI + LD+ F G + L+ L M
Sbjct: 183 GLSNLRYLNLAMCNL-REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMH--LQKLWMI 239
Query: 346 SSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLN 398
S I + ++LV +NLA+N++ L + F L L + ++ N N
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
Query: 335 VSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYD 394
+S L++ + I + R+L L L+ N I + +F L+ L L+++D
Sbjct: 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121
Query: 395 NKLNGTLSEFHFANLTKLS--WFRVGGNQLTFEVKHDWIPPFQLVALG 440
N+L T+ F L+KL W R + + IP + + LG
Sbjct: 122 NRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 25/204 (12%)
Query: 555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPN-SLGSITSLVWLYLRKN 613
+ LE L+L+ N+++ + NL L+L +N+ + +PN + ++ L L+LR N
Sbjct: 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNN 146
Query: 614 RLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTIC 673
+ + +L LD+ E + + I E S + L L +P +
Sbjct: 147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LT 204
Query: 674 DLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLD-ISRNNFS 732
L L LDL+ N+LS P SF G + +++ + S + I RN F
Sbjct: 205 PLIKLDELDLSGNHLSAIRP------------GSFQGLMHLQKLWMIQSQIQVIERNAFD 252
Query: 733 GEILSEVTNLKALQSINFSFNTFT 756
NL++L IN + N T
Sbjct: 253 --------NLQSLVEINLAHNNLT 268
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 14/182 (7%)
Query: 360 FRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGG 419
NL+ L L +N I L P L+ + EL++ N L + A L + +
Sbjct: 62 LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA---IAGLQSIKTLDLTS 116
Query: 420 NQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFL 479
Q+T + Q++ L L+ S L +LQYL++ N+++SD+ P+ L
Sbjct: 117 TQITDVTPLAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQVSDLTPLANL 172
Query: 480 KSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLV-SSNLVYLDFSNNS 538
+ LK D ++ IS L L+ + + +N +S PL +SNL + +N +
Sbjct: 173 SKLTTLKADDNKISD----ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT 228
Query: 539 FS 540
+
Sbjct: 229 IT 230
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
Query: 551 VNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSL-GSITSLVWLY 609
+ E +L L LT N LQ + NLK L L N+ LP+ + +T+L +LY
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLY 139
Query: 610 LRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLP 669
L N+L T L LD+D N+ + ++P ++ +++ L L NQ +P
Sbjct: 140 LYHNQLQSLPKGVFDKLTNLTRLDLDNNQ-LQSLPEGVFDKLTQLKQLSLNDNQLKS-VP 197
Query: 670 KTICD 674
+ D
Sbjct: 198 DGVFD 202
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 21/177 (11%)
Query: 117 DFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLS 176
D + VQ I + N+RYL L + + L L++L +L L+ N L
Sbjct: 52 DIKSVQ---GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFD 106
Query: 177 GLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCS-LHHFPTLASPIPRGL-QNL 234
L+ L+ L L L +LP + +L+N + L+ + +P+G+ L
Sbjct: 107 KLTNLKELVLVENQLQ----------SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKL 156
Query: 235 TSLKHLDLDSNHFNSSIPDWLY-KFSPLECLNLRNNSLQGTISDAIGNLTSVS--WL 288
T+L LDLD+N S+P+ ++ K + L+ L+L +N L+ LTS++ WL
Sbjct: 157 TNLTRLDLDNNQL-QSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWL 212
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 335 VSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYD 394
V N L+SL ++ LT NL LNLA+N + L F +L+ L EL +
Sbjct: 117 VENQLQSL---PDGVFDKLT-------NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166
Query: 395 NKLNGTLSEFHFANLTKLSWFRVGGNQL 422
N+L +L E F LT+L R+ NQL
Sbjct: 167 NQLQ-SLPEGVFDKLTQLKDLRLYQNQL 193
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 227 IPRGL-QNLTSLKHLDLDSNHFNSSIPDWLY-KFSPLECLNLRNNSLQGTISDAIGNLTS 284
+P G+ LT+LK L L N S+PD ++ K + L LNL +N LQ LT+
Sbjct: 100 LPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158
Query: 285 VSWLDLSIN 293
++ LDLS N
Sbjct: 159 LTELDLSYN 167
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 352 HLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTK 411
H L + NL L L N + L F +L+ L+EL + +N+L +L + F LT
Sbjct: 76 HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTN 134
Query: 412 LSWFRVGGNQL 422
L++ + NQL
Sbjct: 135 LTYLNLAHNQL 145
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 5/138 (3%)
Query: 551 VNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSL-GSITSLVWLY 609
+ E +L L LT N LQ + NLK L L N+ +LP+ + +T+L +L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLN 139
Query: 610 LRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLP 669
L N+L T L LD+ N+ ++P ++ +++ L L NQ +P
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQLKS-VP 197
Query: 670 KTICD-LAFLQILDLADN 686
+ D L LQ + L DN
Sbjct: 198 DGVFDRLTSLQYIWLHDN 215
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 129 SMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRS 188
S L+ L+LS + + +LS L L L+ N + + SGLS L+ L
Sbjct: 51 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 110
Query: 189 VNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFN 248
NL+ ++ + L +L EL +++ + F +P NLT+L+HLDL SN
Sbjct: 111 TNLASLENFPIGH--LKTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSNKIQ 163
Query: 249 S 249
S
Sbjct: 164 S 164
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 129 SMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRS 188
S L+ L+LS + + +LS L L L+ N + + SGLS L+ L
Sbjct: 52 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALE 111
Query: 189 VNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFN 248
NL+ ++ + L +L EL +++ + F +P NLT+L+HLDL SN
Sbjct: 112 TNLASLENFPIGH--LKTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSNKIQ 164
Query: 249 S 249
S
Sbjct: 165 S 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 129 SMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRS 188
S L+ L+LS + + +LS L L L+ N + + SGLS L+ L
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 189 VNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFN 248
NL+ ++ + L +L EL +++ + F +P NLT+L+HLDL SN
Sbjct: 110 TNLASLENFPIGH--LKTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSNKIQ 162
Query: 249 S 249
S
Sbjct: 163 S 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 129 SMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRS 188
S L+ L+LS + + +LS L L L+ N + + SGLS L+ L
Sbjct: 51 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 110
Query: 189 VNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFN 248
NL+ ++ + L +L EL +++ + F +P NLT+L+HLDL SN
Sbjct: 111 TNLASLENFPIGH--LKTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSNKIQ 163
Query: 249 S 249
S
Sbjct: 164 S 164
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 129 SMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRS 188
S L+ L+LS + + +LS L L L+ N + + SGLS L+ L
Sbjct: 52 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 111
Query: 189 VNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFN 248
NL+ ++ + L +L EL +++ + F +P NLT+L+HLDL SN
Sbjct: 112 TNLASLENFPIGH--LKTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSNKIQ 164
Query: 249 S 249
S
Sbjct: 165 S 165
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 88/323 (27%), Positives = 141/323 (43%), Gaps = 55/323 (17%)
Query: 229 RGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGT--ISD--AIGNLTS 284
+G++ LT+L++L+L+ N + SPL L N GT I+D A+ NLT+
Sbjct: 60 QGIEYLTNLEYLNLNGNQ--------ITDISPLSNLVKLTNLYIGTNKITDISALQNLTN 111
Query: 285 VSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDM 344
+ L L+ + + P +AN S+NL H ++S + + GL L +
Sbjct: 112 LRELYLNED-NISDISP--LANLTKXYSLNLGANHNLSDLSPLSN------XTGLNYLTV 162
Query: 345 RSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEF 404
S + + +L +L+L N I E L++L L + +N
Sbjct: 163 TESKVKD--VTPIANLTDLYSLSLNYNQI-----EDISPLASLTSLHYFTAYVNQITDIT 215
Query: 405 HFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLN 464
AN T+L+ ++G N++T D P L L +G+ +++ K L L
Sbjct: 216 PVANXTRLNSLKIGNNKIT-----DLSPLANLSQLTW--LEIGTNQISDINAVKDLTKLK 268
Query: 465 LLN---SRISDIFPIRFLKSASQLKFLDVGLNQFH-------GKISNLTKNTQLLFLSVN 514
LN ++ISD I L + SQL L + NQ G ++NLT LFLS
Sbjct: 269 XLNVGSNQISD---ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTT----LFLS-- 319
Query: 515 SNNMSGPLPLVS-SNLVYLDFSN 536
N+++ PL S S DF+N
Sbjct: 320 QNHITDIRPLASLSKXDSADFAN 342
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 17/157 (10%)
Query: 469 RISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVS-S 527
+I DI P L S + L + +NQ I+ + T+L L + +N ++ PL + S
Sbjct: 188 QIEDISP---LASLTSLHYFTAYVNQI-TDITPVANXTRLNSLKIGNNKITDLSPLANLS 243
Query: 528 NLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWM--SYQNLKVLK 585
L +L+ N S +N K L LK N +I D + + L L
Sbjct: 244 QLTWLEIGTNQISD---------INAVKDLTKLKXL-NVGSNQISDISVLNNLSQLNSLF 293
Query: 586 LSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPIS 622
L+NN+ +G +T+L L+L +N ++ P++
Sbjct: 294 LNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPLA 330
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 105/260 (40%), Gaps = 41/260 (15%)
Query: 342 LDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTL 401
L+++ +SI TD R+L L L+ N + + +F L +L L+++DN+L T+
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT-TV 98
Query: 402 SEFHFANLTKLS--WFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKH 459
F L+KL W R + + +P + + LG K
Sbjct: 99 PTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLG---------------ELKR 143
Query: 460 LQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMS 519
L+Y IS+ + L++L++G+ I NLT +L L ++ N +
Sbjct: 144 LEY-------ISEA----AFEGLVNLRYLNLGMCNL-KDIPNLTALVRLEELELSGNRLD 191
Query: 520 GPLP-----LVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDC 574
P L S ++L ++ ++ KSLE L L+ N L D
Sbjct: 192 LIRPGSFQGLTSLRKLWL------MHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDL 245
Query: 575 WMSYQNLKVLKLSNNKFSGN 594
+ L+ + L++N + N
Sbjct: 246 FTPLHRLERVHLNHNPWHCN 265
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 32/156 (20%)
Query: 264 LNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQE 323
LNL+ NS+Q +D +L + L LS N+ +R + +
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNL--------------------VRKIEVGA- 78
Query: 324 ISEILDIFSGCVS-NGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFG 382
F+G S N LE D R +++ + L + R L L NN I + +F
Sbjct: 79 -------FNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELW---LRNNPIESIPSYAFN 128
Query: 383 QLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVG 418
++ +LR L + + K +SE F L L + +G
Sbjct: 129 RVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLG 164
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 98/231 (42%), Gaps = 24/231 (10%)
Query: 184 LDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQN-LTSLKHLDL 242
++ R +NL + S ++ T+T L L + S L I G N L SL L+L
Sbjct: 35 VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLS----KNLVRKIEVGAFNGLPSLNTLEL 90
Query: 243 DSNHFNSSIPDWLYKF-SPLECLNLRNNSLQGTISDAIGNLTSVSWLDLS--------IN 293
N +++P +++ S L L LRNN ++ S A + S+ LDL
Sbjct: 91 FDNRL-TTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISE 149
Query: 294 IGLQGRIPRSMANF--CNLKSV-NLRGVHLSQEIS---EILDIFSGCVSNGLESLD---M 344
+G + N CNLK + NL + +E+ LD+ GL SL +
Sbjct: 150 AAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWL 209
Query: 345 RSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDN 395
+ + + ++L LNL++N+++ L + F L L + + N
Sbjct: 210 MHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 8/111 (7%)
Query: 132 NLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNL 191
N RYLNL + + +L L+ L LS N + V +GL L L+L L
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 192 SKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDL 242
+ A L L EL L N + P+ A + SL+ LDL
Sbjct: 96 TTVPT--QAFEYLSKLRELWLRNNPIESIPSYA------FNRVPSLRRLDL 138
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 342 LDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTL 401
L+++ +SI TD R+L L L+ N + + +F L +L L+++DN+L T+
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT-TV 98
Query: 402 SEFHFANLTKLS--WFR 416
F L+KL W R
Sbjct: 99 PTQAFEYLSKLRELWLR 115
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 32/156 (20%)
Query: 264 LNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQE 323
LNL+ NS+Q +D +L + L LS N+ +R + +
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNL--------------------VRKIEVGA- 78
Query: 324 ISEILDIFSGCVS-NGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFG 382
F+G S N LE D R +++ + L + R L L NN I + +F
Sbjct: 79 -------FNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELW---LRNNPIESIPSYAFN 128
Query: 383 QLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVG 418
++ +LR L + + K +SE F L L + +G
Sbjct: 129 RVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLG 164
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 98/231 (42%), Gaps = 24/231 (10%)
Query: 184 LDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQN-LTSLKHLDL 242
++ R +NL + S ++ T+T L L + L L I G N L SL L+L
Sbjct: 35 VNTRYLNLQENSIQVIRTDTFKHLRHLEI----LQLSKNLVRKIEVGAFNGLPSLNTLEL 90
Query: 243 DSNHFNSSIPDWLYKF-SPLECLNLRNNSLQGTISDAIGNLTSVSWLDLS--------IN 293
N +++P +++ S L L LRNN ++ S A + S+ LDL
Sbjct: 91 FDNRL-TTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISE 149
Query: 294 IGLQGRIPRSMANF--CNLKSV-NLRGVHLSQEIS---EILDIFSGCVSNGLESLD---M 344
+G + N CNLK + NL + +E+ LD+ GL SL +
Sbjct: 150 AAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWL 209
Query: 345 RSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDN 395
+ + + ++L LNL++N+++ L + F L L + + N
Sbjct: 210 MHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 8/111 (7%)
Query: 132 NLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNL 191
N RYLNL + + +L L+ L LS N + V +GL L L+L L
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 192 SKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDL 242
+ A L L EL L N + P+ A + SL+ LDL
Sbjct: 96 TTVPT--QAFEYLSKLRELWLRNNPIESIPSYA------FNRVPSLRRLDL 138
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 77/184 (41%), Gaps = 28/184 (15%)
Query: 127 IGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSG-LSFLEHLD 185
I S N++ +S T+ V M+ P +S LD S+N L D V+ G L+ LE L
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCP--SKISPFLHLDFSNNLL-TDTVFENCGHLTELETLI 354
Query: 186 LRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPT-------------------LASP 226
L+ L + S T + SL +L +S S+ + L
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414
Query: 227 IPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVS 286
I R L +K LDL SN S IP + K L+ LN+ +N L+ LTS+
Sbjct: 415 IFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471
Query: 287 --WL 288
WL
Sbjct: 472 KIWL 475
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 70/158 (44%), Gaps = 20/158 (12%)
Query: 257 KFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSIN-IGLQGRIPRSMANFCNLKSVNL 315
K SP L+ NN L T+ + G+LT + L L +N + +I +L+ +++
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381
Query: 316 RGVHLSQEISE------------------ILDIFSGCVSNGLESLDMRSSSIYGHLTDQL 357
+S + + + D C+ ++ LD+ S+ I + Q+
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQV 440
Query: 358 GQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDN 395
+ L LN+A+N + + F +L++L+++ ++ N
Sbjct: 441 VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 143/340 (42%), Gaps = 48/340 (14%)
Query: 456 SQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNS 515
S +QYL+ I K +L++LD+ N+ + T N + L LS N+
Sbjct: 53 SHNRIQYLD-----------ISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNA 101
Query: 516 NNMSGPLPLVS-----SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGE 570
+ LP+ S L +L S S S +N +K L L L + Y + E
Sbjct: 102 FD---ALPICKEFGNMSQLKFLGLSTTHLEKS-SVLPIAHLNISKVL--LVLGETYGEKE 155
Query: 571 IPDCWMSY--QNLKVLKLSNNKFSGNLPNSLGSITSL----VWLYLRKNRLSGKIPI--S 622
P+ + ++L ++ +N +F L S+ ++ +L + L N+ S + I
Sbjct: 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAK 215
Query: 623 LKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILD 682
L+ L++L ++ E TW F R+L L+ + ++ +I ++ LD
Sbjct: 216 LQTNPKLSNLTLNNIE-----TTW--NSFIRILQLVWHTTVWYF----SISNVKLQGQLD 264
Query: 683 LADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEV--- 739
D + SG K +S + V F S +Y + S ++I SG + +
Sbjct: 265 FRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE----IFSNMNIKNFTVSGTRMVHMLCP 320
Query: 740 TNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQL 779
+ + ++FS N T + E+ G + LE++ +NQL
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 20/141 (14%)
Query: 570 EIPDC-WMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTA 628
EI D + + +NL L L NNK S P + + L LYL KN+L ++P +
Sbjct: 66 EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KT 122
Query: 629 LASLDVDENEFVGNIPTWFGERFSRMLVLILRSN----------QFHGPLPKTICDLAFL 678
L L V ENE + F ++M+V+ L +N F G + L+++
Sbjct: 123 LQELRVHENEITKVRKSVFN-GLNQMIVVELGTNPLKSSGIENGAFQG-----MKKLSYI 176
Query: 679 QILDLADNNLSGAIPKCISNL 699
+I D + +P ++ L
Sbjct: 177 RIADTNITTIPQGLPPSLTEL 197
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 98/254 (38%), Gaps = 35/254 (13%)
Query: 342 LDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTL 401
LD++++ I +NL TL L NN I + P +F L L L + N+ L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ----L 112
Query: 402 SEFHFANLTKLSWFRVGGNQLTFEVKH--DWIPPFQLVALGLHNCYVGSRFPQWLHSQKH 459
E L RV N++T K + + +V LG + K
Sbjct: 113 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 460 LQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMS 519
L Y+ + ++ I+ I + L L + H + +TK V++ ++
Sbjct: 173 LSYIRIADTNITTI-----------PQGLPPSLTELHLDGNKITK--------VDAASLK 213
Query: 520 GPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQ 579
G +NL L S NS S + L T L L L +N L ++P ++
Sbjct: 214 G-----LNNLAKLGLSFNSISAVDNGSLA----NTPHLRELHLNNNKLV-KVPGGLADHK 263
Query: 580 NLKVLKLSNNKFSG 593
++V+ L NN S
Sbjct: 264 YIQVVYLHNNNISA 277
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 713 VYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESV 772
V +++ P +LLD+ N + + NLK L ++ N + P + + LE +
Sbjct: 46 VPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105
Query: 773 DFSVNQLSGEIPQSM 787
S NQL E+P+ M
Sbjct: 106 YLSKNQLK-ELPEKM 119
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 20/141 (14%)
Query: 570 EIPDC-WMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTA 628
EI D + + +NL L L NNK S P + + L LYL KN+L ++P +
Sbjct: 66 EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KT 122
Query: 629 LASLDVDENEFVGNIPTWFGERFSRMLVLILRSN----------QFHGPLPKTICDLAFL 678
L L V ENE + F ++M+V+ L +N F G + L+++
Sbjct: 123 LQELRVHENEITKVRKSVFN-GLNQMIVVELGTNPLKSSGIENGAFQG-----MKKLSYI 176
Query: 679 QILDLADNNLSGAIPKCISNL 699
+I D + +P ++ L
Sbjct: 177 RIADTNITTIPQGLPPSLTEL 197
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 98/254 (38%), Gaps = 35/254 (13%)
Query: 342 LDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTL 401
LD++++ I +NL TL L NN I + P +F L L L + N+ L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ----L 112
Query: 402 SEFHFANLTKLSWFRVGGNQLTFEVKH--DWIPPFQLVALGLHNCYVGSRFPQWLHSQKH 459
E L RV N++T K + + +V LG + K
Sbjct: 113 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 460 LQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMS 519
L Y+ + ++ I+ I + L L + H + +TK V++ ++
Sbjct: 173 LSYIRIADTNITTI-----------PQGLPPSLTELHLDGNKITK--------VDAASLK 213
Query: 520 GPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQ 579
G +NL L S NS S + L T L L L +N L ++P ++
Sbjct: 214 G-----LNNLAKLGLSFNSISAVDNGSLA----NTPHLRELHLNNNKLV-KVPGGLADHK 263
Query: 580 NLKVLKLSNNKFSG 593
++V+ L NN S
Sbjct: 264 YIQVVYLHNNNISA 277
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 713 VYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESV 772
V +++ P +LLD+ N + + NLK L ++ N + P + + LE +
Sbjct: 46 VPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105
Query: 773 DFSVNQLSGEIPQSM 787
S NQL E+P+ M
Sbjct: 106 YLSKNQLK-ELPEKM 119
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 11/202 (5%)
Query: 261 LECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHL 320
L L L +N+L G + A LT + LDLS N L+ P + +L +++L L
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL 116
Query: 321 SQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPES 380
QE+ +F G + L+ L ++ +++ + NL L L N I + +
Sbjct: 117 -QELGP--GLFRGLAA--LQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHA 171
Query: 381 FGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALG 440
F L +L L ++ N + + F +L +L + N L+ +P L L
Sbjct: 172 FRGLHSLDRLLLHQNHV-ARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLR 230
Query: 441 LHN----CYVGSRFPQWLHSQK 458
L++ C +R P W QK
Sbjct: 231 LNDNPWVCDCRAR-PLWAWLQK 251
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 49/192 (25%)
Query: 574 CWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSG--KIPISLKNCTALAS 631
C S + L + N F+ ++ ++ L L L++N L K+ + KN ++L +
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET 407
Query: 632 LDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGA 691
LDV N L S+ + +T + +L+L+ N L+G+
Sbjct: 408 LDVSLNS--------------------LNSHAYD----RTCAWAESILVLNLSSNMLTGS 443
Query: 692 IPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFS 751
+ +C+ P V +LD+ NN I +VT+L+ALQ +N +
Sbjct: 444 VFRCLP---------------------PKVKVLDL-HNNRIMSIPKDVTHLQALQELNVA 481
Query: 752 FNTFTGRIPESI 763
N +P+ +
Sbjct: 482 SNQLKS-VPDGV 492
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 76/168 (45%), Gaps = 10/168 (5%)
Query: 235 TSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAI--GNLTSVSWLDLSI 292
+S L+ N F S+ L+ L L+ N L+ A+ N++S+ LD+S+
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 293 NIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGH 352
N R+ A ++ +NL L+ + C+ ++ LD+ ++ I
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR-------CLPPKVKVLDLHNNRIMS- 464
Query: 353 LTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGT 400
+ + + L LN+A+N + + F +L++L+ + ++DN + T
Sbjct: 465 IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512
>pdb|1LJ2|A Chain A, Recognition Of Eif4g By Rotavirus Nsp3 Reveals A Basis For
Mrna Circularization
pdb|1LJ2|B Chain B, Recognition Of Eif4g By Rotavirus Nsp3 Reveals A Basis For
Mrna Circularization
Length = 110
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
Query: 567 LQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPI----- 621
LQ IP ++ L++ NNK +L N +GS+TS + YLR L +I
Sbjct: 4 LQNVIP---QQQAHIAELQVYNNKLERDLQNKIGSLTSSIEWYLRSMELDPEIKADIEQQ 60
Query: 622 --SLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSN 662
S+ L + D D + N+ + + + F LI RSN
Sbjct: 61 INSIDAINPLHAFD-DLESVIRNLISDYDKLFLMFKGLIQRSN 102
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 342 LDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTL 401
L S+ ++ LT+ L TL LANN + L F L+ L +L + N+L +L
Sbjct: 71 LQTLSAGVFDDLTE-------LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SL 122
Query: 402 SEFHFANLTKLSWFRVGGNQL 422
F LTKL R+ NQL
Sbjct: 123 PSGVFDRLTKLKELRLNTNQL 143
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 342 LDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTL 401
L S+ ++ LT+ L TL LANN + L F L+ L +L + N+L +L
Sbjct: 71 LQTLSAGVFDDLTE-------LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SL 122
Query: 402 SEFHFANLTKLSWFRVGGNQL 422
F LTKL R+ NQL
Sbjct: 123 PSGVFDRLTKLKELRLNTNQL 143
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 89/200 (44%), Gaps = 38/200 (19%)
Query: 344 MRSSSIYGHLTDQLGQ--FRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTL 401
+++++ ++TD + Q + TL+ N + + E L+ L L++ DN++
Sbjct: 28 VKTATGKSNVTDAVTQADLDGIATLSAFNTGVTTI--EGIQYLNNLIGLELKDNQITDL- 84
Query: 402 SEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQ 461
NLTK++ + GN P + V+ + + ++
Sbjct: 85 --TPLKNLTKITELELSGN------------PLKNVS--------------AIAGLQSIK 116
Query: 462 YLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGP 521
L+L +++I+D+ P+ L S L+ L + LNQ IS L T L +LS+ +N ++
Sbjct: 117 TLDLTSTQITDVTPLAGL---SNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNNQVNDL 172
Query: 522 LPLVS-SNLVYLDFSNNSFS 540
PL + S L L +N S
Sbjct: 173 TPLANLSKLTTLRADDNKIS 192
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 115/482 (23%), Positives = 202/482 (41%), Gaps = 71/482 (14%)
Query: 334 CVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIY 393
CV L++L + S+ I D +L L+L+ N + L F LS+L L +
Sbjct: 49 CV--NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 106
Query: 394 DNKLNGTLSEFHFANLTKLSWFRVGG-NQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQ 452
N F++LTKL RVG + T + D+ L L + + S P+
Sbjct: 107 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 166
Query: 453 WLHSQKHLQYLNLLNSR---ISDIFPIRFLKSASQLKFLDVGLNQFH------GKISNLT 503
L S +++ +L L + + +IF + S L+ D L+ FH G+ ++L
Sbjct: 167 SLKSIQNVSHLILHMKQHILLLEIF-VDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 225
Query: 504 KNTQLLFLSVNSNNMSGPLPLVS--SNLVYLDFSNNSFSGSISHFLCY---RV-----NE 553
K + + ++ + L++ S L+ L+F + + +G + +F RV E
Sbjct: 226 KKFTFRNVKITDESLFQVMKLLNQISGLLELEFDDCTLNG-VGNFRASDNDRVIDPGKVE 284
Query: 554 TKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNK-------------------FSGN 594
T ++ L + YL ++ + + +K + + N+K S N
Sbjct: 285 TLTIRRLHIPRFYLFYDLSTLYSLTERVKRITVENSKVFLVPCLLSQHLKSLEYLDLSEN 344
Query: 595 ------LPNSL--GSITSLVWLYLRKNRL-----SGKIPISLKNCTALASLDVDENEFVG 641
L NS + SL L LR+N L +G+ ++LKN L ++D+ +N F
Sbjct: 345 LMVEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKN---LTNIDISKNSFHS 401
Query: 642 NIPTWFGERFSRMLVLILRSNQFH---GPLPKTICDLAFLQILDLADNNLSGAIPKCISN 698
T + +M L L S + H G +PKT L+ILD+++NNL+ +
Sbjct: 402 MPET--CQWPEKMKYLNLSSTRIHSVTGCIPKT------LEILDVSNNNLNLFSLN-LPQ 452
Query: 699 LTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGR 758
L + ++ ++ +LP++ +L ISRN L +LQ I N +
Sbjct: 453 LKELYISRNKLMTLPDASLLPMLLVLKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512
Query: 759 IP 760
P
Sbjct: 513 CP 514
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 93/201 (46%), Gaps = 41/201 (20%)
Query: 233 NLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDA-------------I 279
+L SL+HLDL N+ ++ W S L LNL N + T+ + +
Sbjct: 72 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRV 130
Query: 280 GNLTSVSWL------------DLSINIG-LQGRIPRSMANFCNLKSVNLRGVHLSQEISE 326
GN+ + + + +L I+ LQ P+S+ + N+ + L H+ Q I
Sbjct: 131 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL---HMKQHIL- 186
Query: 327 ILDIFSGCVSNGLESLDMRSSSIYG-HLTD-QLGQFRNLVT------LNLANNSIVGLIP 378
+L+IF V++ +E L++R + + H ++ G+ +L+ + + + S+ ++
Sbjct: 187 LLEIFVD-VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM- 244
Query: 379 ESFGQLSTLRELQIYDNKLNG 399
+ Q+S L EL+ D LNG
Sbjct: 245 KLLNQISGLLELEFDDCTLNG 265
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 4/158 (2%)
Query: 529 LVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSN 588
L LD S+N+ S+ + + L L L LQ P + L+ L L +
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGR---LHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 589 NKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFG 648
N ++ + +L L+L NR+S + + +L L + +N P F
Sbjct: 138 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 197
Query: 649 ERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADN 686
+ R++ L L +N + + L LQ L L DN
Sbjct: 198 D-LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 4/158 (2%)
Query: 529 LVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSN 588
L LD S+N+ S+ + + L L L LQ P + L+ L L +
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGR---LHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 589 NKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFG 648
N ++ + +L L+L NR+S + + +L L + +N P F
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198
Query: 649 ERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADN 686
+ R++ L L +N + + L LQ L L DN
Sbjct: 199 D-LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 360 FRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKL 397
++ L ++L+NN I L P++F L +L L +Y NK+
Sbjct: 55 YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 360 FRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKL 397
++ L ++L+NN I L P++F L +L L +Y NK+
Sbjct: 55 YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 359 QFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVG 418
+ +L LNL+ N + L F +L+ L+EL + N+L +L + F LT+L R+
Sbjct: 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLY 132
Query: 419 GNQL 422
NQL
Sbjct: 133 QNQL 136
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 78/190 (41%), Gaps = 33/190 (17%)
Query: 234 LTSLKHLDLDSNHFNSSIPDWLYKF-SPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSI 292
L SL L+L N + IP +++ S L L LRNN ++ S A + S+ LDL
Sbjct: 122 LASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180
Query: 293 NIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDM-------- 344
L+ + NLK +NL + I D+ + GLE L+M
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNL-------GMCNIKDMPNLTPLVGLEELEMSGNHFPEI 233
Query: 345 RSSSIYGHLT----------------DQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLR 388
R S +G + + +LV LNLA+N++ L + F L L
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293
Query: 389 ELQIYDNKLN 398
EL ++ N N
Sbjct: 294 ELHLHHNPWN 303
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 15/216 (6%)
Query: 334 CVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIY 393
CV+ L++L + S+ I D +L L+L+ N + L F LS+L L +
Sbjct: 75 CVN--LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132
Query: 394 DNKLNGTLSEFHFANLTKLSWFRVGG-NQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQ 452
N F++LTKL RVG + T + D+ L L + + S P+
Sbjct: 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192
Query: 453 WLHSQKHLQYLNLLNSR---ISDIFPIRFLKSASQLKFLDVGLNQFH------GKISNLT 503
L S +++ +L L + + +IF + S L+ D L+ FH G+ ++L
Sbjct: 193 SLKSIQNVSHLILHMKQHILLLEIF-VDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251
Query: 504 KNTQLLFLSVNSNNMSGPLPLVS--SNLVYLDFSNN 537
K + + ++ + L++ S L+ L+FS N
Sbjct: 252 KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 25/100 (25%)
Query: 356 QLGQFRNLVTLNLANNSIVGL------------------------IPESFGQLSTLRELQ 391
+L +++L ++L+NN I L P +F L +LR L
Sbjct: 49 ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108
Query: 392 IYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWI 431
++ N ++ + E F +L+ LS +G N L + W+
Sbjct: 109 LHGNDIS-VVPEGAFNDLSALSHLAIGANPLYCDCNMQWL 147
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 11/119 (9%)
Query: 128 GSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLR 187
G R++ L L QF ++P +L N L +DLS+N + LS SF L
Sbjct: 28 GIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST-----LSNQSFSNMTQLL 81
Query: 188 SVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRG-LQNLTSLKHLDLDSN 245
++ LS + T L LRL SLH S +P G +L++L HL + +N
Sbjct: 82 TLILSYNRLRCIPPRTFDGLKSLRL--LSLHG--NDISVVPEGAFNDLSALSHLAIGAN 136
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 562 LTDNYLQGE----IPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSG 617
+T+ YL G +P +Y++L ++ LSNN+ S S ++T L+ L L NRL
Sbjct: 33 VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 618 KIPISLKNCTALASLDVDENEF 639
P + +L L + N+
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDI 114
>pdb|2F98|A Chain A, Crystal Structure Of The Polyketide Cyclase Aknh With
Bound Substrate And Product Analogue: Implications For
Catalytic Mechanism And Product Stereoselectivity.
pdb|2F98|B Chain B, Crystal Structure Of The Polyketide Cyclase Aknh With
Bound Substrate And Product Analogue: Implications For
Catalytic Mechanism And Product Stereoselectivity.
pdb|2F98|C Chain C, Crystal Structure Of The Polyketide Cyclase Aknh With
Bound Substrate And Product Analogue: Implications For
Catalytic Mechanism And Product Stereoselectivity.
pdb|2F98|D Chain D, Crystal Structure Of The Polyketide Cyclase Aknh With
Bound Substrate And Product Analogue: Implications For
Catalytic Mechanism And Product Stereoselectivity.
pdb|2F99|A Chain A, Crystal Structure Of The Polyketide Cyclase Aknh With
Bound Substrate And Product Analogue: Implications For
Catalytic Mechanism And Product Stereoselectivity.
pdb|2F99|B Chain B, Crystal Structure Of The Polyketide Cyclase Aknh With
Bound Substrate And Product Analogue: Implications For
Catalytic Mechanism And Product Stereoselectivity.
pdb|2F99|C Chain C, Crystal Structure Of The Polyketide Cyclase Aknh With
Bound Substrate And Product Analogue: Implications For
Catalytic Mechanism And Product Stereoselectivity.
pdb|2F99|D Chain D, Crystal Structure Of The Polyketide Cyclase Aknh With
Bound Substrate And Product Analogue: Implications For
Catalytic Mechanism And Product Stereoselectivity
Length = 153
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 147 IPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMA 200
I P+ N L+F L L+ NV W+ +F E L V + + +DW+ A
Sbjct: 36 IHPEYMNPGTLEFTSLRGPELFAINVAWVKK-TFSEEARLEEVGIEERADWVRA 88
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 315 LRGVHLSQEISEILDIFSGCV--SNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNS 372
LR ++ S ++I DI G ++G+ + + S+ + +L TL L +N
Sbjct: 59 LRKINFSN--NKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR 116
Query: 373 IVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWI 431
I + +SF LS++R L +YDN++ T++ F L LS + N W+
Sbjct: 117 ITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPFNCNCYLAWL 174
>pdb|3ZR5|A Chain A, Structure Of Galactocerebrosidase From Mouse
pdb|3ZR6|A Chain A, Structure Of Galactocerebrosidase From Mouse In Complex
With Galactose
Length = 656
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 382 GQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHD 429
G L ++ELQ++ KL HF L L W G T E++ D
Sbjct: 387 GSLREIQELQVWYTKLGTPQQRLHFKQLDTL-WLLDGSGSFTLELEED 433
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,863,765
Number of Sequences: 62578
Number of extensions: 905294
Number of successful extensions: 2652
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1819
Number of HSP's gapped (non-prelim): 400
length of query: 840
length of database: 14,973,337
effective HSP length: 107
effective length of query: 733
effective length of database: 8,277,491
effective search space: 6067400903
effective search space used: 6067400903
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)