Query 003200
Match_columns 840
No_of_seqs 752 out of 4233
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 18:58:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003200.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003200hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.5E-71 5.4E-76 677.8 46.6 583 32-830 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.3E-55 2.7E-60 539.5 37.5 495 229-826 87-583 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 1E-40 2.2E-45 327.6 -17.9 492 106-780 45-541 (565)
4 KOG4194 Membrane glycoprotein 100.0 7.3E-37 1.6E-41 313.8 8.2 371 337-776 78-448 (873)
5 KOG4194 Membrane glycoprotein 100.0 1.7E-36 3.7E-41 311.1 9.4 357 262-699 81-439 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 2E-38 4.4E-43 311.5 -13.5 181 601-809 360-544 (565)
7 KOG0618 Serine/threonine phosp 100.0 4.6E-36 9.9E-41 324.7 -6.1 243 527-802 241-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.3E-34 2.7E-39 313.6 -4.2 356 231-689 87-443 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.1E-32 2.3E-37 284.8 -3.0 202 554-780 172-375 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 3E-31 6.6E-36 274.2 -0.5 182 554-760 196-379 (1255)
11 KOG4237 Extracellular matrix p 99.9 8E-26 1.7E-30 223.0 -2.3 290 132-447 68-359 (498)
12 KOG4237 Extracellular matrix p 99.9 2.2E-25 4.8E-30 219.9 -4.8 405 338-801 68-498 (498)
13 PLN03210 Resistant to P. syrin 99.9 3.1E-21 6.7E-26 236.2 27.9 198 401-612 549-756 (1153)
14 PLN03210 Resistant to P. syrin 99.9 4.5E-21 9.7E-26 234.8 25.9 339 428-803 552-905 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 1E-21 2.2E-26 221.9 17.9 154 459-640 202-355 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 1.6E-21 3.5E-26 220.2 17.5 262 484-809 202-463 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1.3E-19 2.9E-24 206.5 13.7 204 556-804 221-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.1E-19 2.4E-24 207.2 11.5 246 459-780 179-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2E-19 4.3E-24 191.9 0.6 257 527-803 23-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.1E-18 4.4E-23 184.1 1.4 215 551-779 77-319 (319)
21 KOG0617 Ras suppressor protein 99.7 4.8E-19 1E-23 155.0 -4.4 182 577-808 31-216 (264)
22 KOG0617 Ras suppressor protein 99.7 8.7E-19 1.9E-23 153.4 -3.5 185 553-786 31-218 (264)
23 PLN03150 hypothetical protein; 99.5 7.3E-14 1.6E-18 159.6 12.4 149 30-189 368-525 (623)
24 PLN03150 hypothetical protein; 99.4 6E-13 1.3E-17 152.2 8.5 116 721-836 420-538 (623)
25 KOG0532 Leucine-rich repeat (L 99.4 3.9E-14 8.5E-19 147.4 -3.3 213 559-802 54-271 (722)
26 KOG0532 Leucine-rich repeat (L 99.3 7.5E-14 1.6E-18 145.3 -3.8 195 554-778 74-271 (722)
27 COG4886 Leucine-rich repeat (L 99.3 4.6E-12 1E-16 139.0 7.2 200 558-786 96-296 (394)
28 COG4886 Leucine-rich repeat (L 99.2 8.5E-12 1.8E-16 136.9 7.5 200 531-763 97-297 (394)
29 KOG1909 Ran GTPase-activating 99.2 1.1E-12 2.3E-17 129.3 -4.2 170 100-271 24-225 (382)
30 KOG3207 Beta-tubulin folding c 99.1 6.4E-12 1.4E-16 127.3 -0.7 224 536-780 102-339 (505)
31 KOG1259 Nischarin, modulator o 99.1 2.3E-11 5.1E-16 116.9 3.1 131 652-807 284-415 (490)
32 PF14580 LRR_9: Leucine-rich r 99.1 2E-11 4.4E-16 113.5 1.9 112 102-219 15-127 (175)
33 KOG1259 Nischarin, modulator o 99.1 2.1E-11 4.5E-16 117.2 1.3 137 622-785 279-416 (490)
34 KOG1909 Ran GTPase-activating 99.1 1.9E-11 4E-16 120.7 0.2 235 526-779 29-310 (382)
35 KOG3207 Beta-tubulin folding c 99.0 3E-11 6.6E-16 122.5 -0.5 219 152-398 118-339 (505)
36 PF14580 LRR_9: Leucine-rich r 99.0 4E-10 8.8E-15 104.9 5.0 125 554-683 18-147 (175)
37 PF08263 LRRNT_2: Leucine rich 98.9 2.1E-09 4.7E-14 74.7 4.2 39 33-71 2-43 (43)
38 KOG4658 Apoptotic ATPase [Sign 98.9 1.3E-09 2.9E-14 127.2 5.0 162 101-273 566-731 (889)
39 PF13855 LRR_8: Leucine rich r 98.8 3.4E-09 7.4E-14 81.0 3.6 60 744-803 2-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.8 3.4E-09 7.3E-14 81.0 3.4 61 719-779 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.8 1E-09 2.2E-14 120.4 0.6 228 551-808 91-322 (414)
42 KOG0531 Protein phosphatase 1, 98.8 8E-10 1.7E-14 121.2 -1.7 241 526-805 48-291 (414)
43 KOG4658 Apoptotic ATPase [Sign 98.7 4.6E-09 1E-13 122.8 3.2 278 106-398 523-807 (889)
44 KOG2120 SCF ubiquitin ligase, 98.5 2.2E-09 4.8E-14 103.6 -6.8 180 236-420 186-373 (419)
45 KOG2120 SCF ubiquitin ligase, 98.5 3.6E-09 7.8E-14 102.1 -6.3 182 133-319 187-374 (419)
46 KOG1859 Leucine-rich repeat pr 98.5 5.6E-09 1.2E-13 112.5 -5.6 196 578-804 83-292 (1096)
47 KOG2982 Uncharacterized conser 98.4 1.3E-07 2.8E-12 91.6 2.0 110 154-269 44-156 (418)
48 KOG1859 Leucine-rich repeat pr 98.4 5.2E-09 1.1E-13 112.7 -8.6 160 99-272 102-292 (1096)
49 KOG4579 Leucine-rich repeat (L 98.3 4.2E-08 9E-13 83.8 -2.7 86 722-810 80-165 (177)
50 KOG4579 Leucine-rich repeat (L 98.3 2.8E-08 6.1E-13 84.8 -3.8 113 677-810 28-141 (177)
51 COG5238 RNA1 Ran GTPase-activa 98.2 8.3E-08 1.8E-12 91.7 -2.7 92 102-193 26-134 (388)
52 KOG2982 Uncharacterized conser 98.2 2.7E-07 5.9E-12 89.4 0.6 207 554-799 70-287 (418)
53 PRK15386 type III secretion pr 98.2 9E-06 2E-10 85.4 10.2 57 575-637 48-104 (426)
54 KOG1644 U2-associated snRNP A' 98.0 9.7E-06 2.1E-10 74.7 5.8 84 131-217 42-125 (233)
55 COG5238 RNA1 Ran GTPase-activa 98.0 9.4E-07 2E-11 84.6 -1.1 36 129-164 28-67 (388)
56 PF12799 LRR_4: Leucine Rich r 98.0 5.9E-06 1.3E-10 57.4 2.9 36 744-780 2-37 (44)
57 KOG4341 F-box protein containi 97.8 5.1E-07 1.1E-11 91.9 -5.9 283 107-397 139-438 (483)
58 PF12799 LRR_4: Leucine Rich r 97.8 1.3E-05 2.8E-10 55.7 2.7 38 767-805 1-38 (44)
59 PRK15386 type III secretion pr 97.8 7.8E-05 1.7E-09 78.5 9.1 76 551-639 48-124 (426)
60 KOG3665 ZYG-1-like serine/thre 97.7 1.9E-05 4E-10 90.6 2.3 97 152-251 170-266 (699)
61 KOG3665 ZYG-1-like serine/thre 97.6 1.1E-05 2.5E-10 92.3 0.2 140 130-278 121-269 (699)
62 KOG1644 U2-associated snRNP A' 97.6 0.00012 2.7E-09 67.6 6.4 105 155-268 42-149 (233)
63 KOG4341 F-box protein containi 97.6 6.9E-06 1.5E-10 83.9 -2.6 261 231-494 160-437 (483)
64 KOG2739 Leucine-rich acidic nu 97.4 5E-05 1.1E-09 73.4 1.6 96 96-194 33-131 (260)
65 PF13306 LRR_5: Leucine rich r 97.1 0.0012 2.6E-08 59.4 6.8 121 551-678 8-128 (129)
66 KOG2739 Leucine-rich acidic nu 97.0 0.00021 4.5E-09 69.2 0.6 68 124-193 36-105 (260)
67 PF13306 LRR_5: Leucine rich r 97.0 0.0018 3.8E-08 58.2 6.3 58 127-186 8-65 (129)
68 KOG2123 Uncharacterized conser 96.4 0.0002 4.3E-09 69.4 -4.0 100 555-658 19-123 (388)
69 KOG1947 Leucine rich repeat pr 96.2 0.00048 1E-08 78.1 -3.4 35 363-397 403-439 (482)
70 KOG2123 Uncharacterized conser 96.0 0.00028 6.1E-09 68.4 -5.3 83 104-191 17-100 (388)
71 KOG1947 Leucine rich repeat pr 95.9 0.0016 3.4E-08 73.8 -0.8 136 178-315 187-328 (482)
72 PF00560 LRR_1: Leucine Rich R 95.7 0.0042 9E-08 35.7 0.8 18 769-787 2-19 (22)
73 PF00560 LRR_1: Leucine Rich R 95.4 0.0062 1.4E-07 35.0 0.8 20 745-765 2-21 (22)
74 KOG4308 LRR-containing protein 93.7 0.00046 9.9E-09 75.9 -12.3 83 485-567 89-184 (478)
75 KOG4308 LRR-containing protein 93.6 0.00055 1.2E-08 75.2 -11.9 182 508-689 89-303 (478)
76 PF13504 LRR_7: Leucine rich r 92.6 0.065 1.4E-06 28.5 1.1 13 768-780 2-14 (17)
77 KOG0473 Leucine-rich repeat pr 92.1 0.0067 1.5E-07 57.5 -5.2 83 720-805 43-125 (326)
78 PF13504 LRR_7: Leucine rich r 91.3 0.12 2.5E-06 27.5 1.1 13 744-756 2-14 (17)
79 KOG0473 Leucine-rich repeat pr 89.4 0.015 3.2E-07 55.3 -5.7 89 670-780 36-124 (326)
80 smart00370 LRR Leucine-rich re 88.9 0.33 7.1E-06 29.1 1.9 19 766-785 1-19 (26)
81 smart00369 LRR_TYP Leucine-ric 88.9 0.33 7.1E-06 29.1 1.9 19 766-785 1-19 (26)
82 PF13516 LRR_6: Leucine Rich r 86.0 0.22 4.8E-06 29.2 -0.1 11 745-755 4-14 (24)
83 PF13516 LRR_6: Leucine Rich r 85.2 0.15 3.2E-06 30.0 -1.1 18 767-784 2-19 (24)
84 smart00370 LRR Leucine-rich re 84.7 0.69 1.5E-05 27.7 1.7 16 742-757 1-16 (26)
85 smart00369 LRR_TYP Leucine-ric 84.7 0.69 1.5E-05 27.7 1.7 16 742-757 1-16 (26)
86 KOG3864 Uncharacterized conser 82.2 0.2 4.4E-06 47.0 -2.0 84 236-319 102-187 (221)
87 KOG3864 Uncharacterized conser 82.0 0.24 5.2E-06 46.6 -1.7 34 235-268 151-185 (221)
88 smart00364 LRR_BAC Leucine-ric 75.9 1.8 4E-05 25.8 1.3 17 768-785 3-19 (26)
89 smart00365 LRR_SD22 Leucine-ri 74.3 2.6 5.6E-05 25.3 1.7 15 766-780 1-15 (26)
90 KOG4242 Predicted myosin-I-bin 72.9 24 0.00052 38.1 9.5 60 557-616 415-481 (553)
91 smart00368 LRR_RI Leucine rich 60.4 6.8 0.00015 23.9 1.7 14 767-780 2-15 (28)
92 KOG4242 Predicted myosin-I-bin 51.8 60 0.0013 35.2 7.9 60 338-397 414-480 (553)
93 KOG3763 mRNA export factor TAP 47.3 9.1 0.0002 42.1 1.2 69 202-274 215-285 (585)
94 KOG3763 mRNA export factor TAP 31.2 28 0.0006 38.5 1.8 67 176-250 215-285 (585)
95 smart00367 LRR_CC Leucine-rich 29.3 36 0.00079 20.2 1.3 11 155-165 2-12 (26)
96 PF08093 Toxin_23: Magi 5 toxi 22.2 67 0.0014 19.8 1.5 15 53-67 4-20 (30)
97 TIGR00864 PCC polycystin catio 21.4 51 0.0011 44.2 1.8 33 725-757 1-33 (2740)
98 TIGR00864 PCC polycystin catio 20.1 57 0.0012 43.7 1.9 33 749-781 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.5e-71 Score=677.77 Aligned_cols=583 Identities=36% Similarity=0.572 Sum_probs=417.2
Q ss_pred cHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCccccceecCCCCCCEEEEEcCCCCCCCCCccccccccccccCCCCCCEE
Q 003200 32 LETERRALLRFKQDLQDPSNRLASWTGDGDCCTWAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYL 111 (840)
Q Consensus 32 ~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 111 (840)
.++|+.||++||+++.+|.+.+.+|..+.+||.|.||+|+. .++|+.|+|+++ .+.|.+++++..+++|++|
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~-------~i~~~~~~~~~~l~~L~~L 98 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGK-------NISGKISSAIFRLPYIQTI 98 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCC-------CccccCChHHhCCCCCCEE
Confidence 56899999999999988888899998778999999999985 579999999997 7788889999999999999
Q ss_pred eCCCCCCCCCCcccccc-CCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCcC
Q 003200 112 DLSSNDFQGVQIPRFIG-SMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVN 190 (840)
Q Consensus 112 ~Ls~n~~~~~~~p~~l~-~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~ 190 (840)
+|++|.+.+. +|..+. .+++|++|+|++|++++.+|. +.+++|++|++++|.+....+..++++++|++|++++|.
T Consensus 99 ~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 99 NLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175 (968)
T ss_pred ECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc
Confidence 9999999874 777654 899999999999999988875 467788888888877654444444444444444444443
Q ss_pred CCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccCc
Q 003200 191 LSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNS 270 (840)
Q Consensus 191 l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 270 (840)
+.+ .. |..++++++|++|++++|.+.+.+|..++++++|++|++++|.
T Consensus 176 l~~--------------------------~~------p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 176 LVG--------------------------KI------PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred ccc--------------------------cC------ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence 322 11 1445555555555555555555555555555555555555555
Q ss_pred cccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEccCCccc
Q 003200 271 LQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIY 350 (840)
Q Consensus 271 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 350 (840)
+++.+|..++++++|++|++++ +.+.+.+|..++++++|+.|+++ +|.+.
T Consensus 224 l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~-----------------------------~n~l~ 273 (968)
T PLN00113 224 LSGEIPYEIGGLTSLNHLDLVY-NNLTGPIPSSLGNLKNLQYLFLY-----------------------------QNKLS 273 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcC-ceeccccChhHhCCCCCCEEECc-----------------------------CCeee
Confidence 5555555555555555555555 34444445444444444444444 44444
Q ss_pred ccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCC
Q 003200 351 GHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDW 430 (840)
Q Consensus 351 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 430 (840)
+.+|..+..+++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+.++. .+..+
T Consensus 274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l--------------------- 331 (968)
T PLN00113 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV-ALTSL--------------------- 331 (968)
T ss_pred ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh-hHhcC---------------------
Confidence 44555555566666666666666666666666666777777766666544433 22222
Q ss_pred CCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccE
Q 003200 431 IPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLF 510 (840)
Q Consensus 431 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~ 510 (840)
++|+.|++++|++.+..|..+
T Consensus 332 ---------------------------~~L~~L~L~~n~l~~~~p~~l-------------------------------- 352 (968)
T PLN00113 332 ---------------------------PRLQVLQLWSNKFSGEIPKNL-------------------------------- 352 (968)
T ss_pred ---------------------------CCCCEEECcCCCCcCcCChHH--------------------------------
Confidence 223333333333222222111
Q ss_pred EEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCc
Q 003200 511 LSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNK 590 (840)
Q Consensus 511 L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 590 (840)
..+++|+.|++++|.+++.+|..+..+++|+.|++++|+
T Consensus 353 -----------------------------------------~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 391 (968)
T PLN00113 353 -----------------------------------------GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391 (968)
T ss_pred -----------------------------------------hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence 112345555555555555555555556666666666666
Q ss_pred CCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCc
Q 003200 591 FSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPK 670 (840)
Q Consensus 591 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~ 670 (840)
+.+.+|..+..+++|+.|++++|++++..|..+.++++|+.|++++|.+++.+|..+. .+++|+.|++++|++.+.+|.
T Consensus 392 l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~ 470 (968)
T PLN00113 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPD 470 (968)
T ss_pred ecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecCc
Confidence 6666666666666666666666666666666666666777777777777666666655 567777777777777766666
Q ss_pred cccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeC
Q 003200 671 TICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINF 750 (840)
Q Consensus 671 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 750 (840)
.+ ..++|+.|++++|++++.+|..+.++++| +.|++++|++++.+|..+.++++|++|+|
T Consensus 471 ~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L-------------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 530 (968)
T PLN00113 471 SF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL-------------------MQLKLSENKLSGEIPDELSSCKKLVSLDL 530 (968)
T ss_pred cc-ccccceEEECcCCccCCccChhhhhhhcc-------------------CEEECcCCcceeeCChHHcCccCCCEEEC
Confidence 54 35788999999999998888888887777 89999999999999999999999999999
Q ss_pred CCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCCCCcCCCcCcCCCCCC-CCCCC
Q 003200 751 SFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFNASSFAGN-DLCGA 829 (840)
Q Consensus 751 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn-~lcg~ 829 (840)
++|.+++.+|..++.+++|++|||++|+++|.+|..+..+++|++|++++|+++|.+|..++|.++.+++|.|| ++||.
T Consensus 531 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~ 610 (968)
T PLN00113 531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG 610 (968)
T ss_pred CCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99986
Q ss_pred C
Q 003200 830 P 830 (840)
Q Consensus 830 ~ 830 (840)
+
T Consensus 611 ~ 611 (968)
T PLN00113 611 D 611 (968)
T ss_pred c
Confidence 5
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-55 Score=539.46 Aligned_cols=495 Identities=32% Similarity=0.529 Sum_probs=352.0
Q ss_pred CcccCCCCCCEEECcCCCCCCCCccccc-CCCCCcEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCC
Q 003200 229 RGLQNLTSLKHLDLDSNHFNSSIPDWLY-KFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANF 307 (840)
Q Consensus 229 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l 307 (840)
..+..+++|++|++++|++.+.+|..+. .+++|++|++++|.+++.+|. +.+++|++|++++ +.+.+.+|..++.+
T Consensus 87 ~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~-n~~~~~~p~~~~~l 163 (968)
T PLN00113 87 SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSN-NMLSGEIPNDIGSF 163 (968)
T ss_pred hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcC-CcccccCChHHhcC
Confidence 3444455555555555555444444332 445555555555555444442 2344455555544 34444444444444
Q ss_pred CCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCC
Q 003200 308 CNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTL 387 (840)
Q Consensus 308 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 387 (840)
++|++|++++|.+.+.+|..+..+. +|+.|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..++++++|
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~-----~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 238 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLT-----SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCc-----CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCC
Confidence 4444444444444444444444443 45555555555555555555555555555555555555555555555555
Q ss_pred CEEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccC
Q 003200 388 RELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLN 467 (840)
Q Consensus 388 ~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~ 467 (840)
++|++++|.+.+.+|. .+.++++|++|++++|.+. +..|..+..+++|++|++++
T Consensus 239 ~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~------------------------~~~p~~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 239 NHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLS------------------------GPIPPSIFSLQKLISLDLSD 293 (968)
T ss_pred CEEECcCceeccccCh-hHhCCCCCCEEECcCCeee------------------------ccCchhHhhccCcCEEECcC
Confidence 5555555555544444 4555555555555444443 34455555666666666666
Q ss_pred CCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchh
Q 003200 468 SRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFL 547 (840)
Q Consensus 468 n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 547 (840)
|++.+..|..+ ..+++|+.|++++|.+. +..|..
T Consensus 294 n~l~~~~p~~~-~~l~~L~~L~l~~n~~~--------------------------------------------~~~~~~- 327 (968)
T PLN00113 294 NSLSGEIPELV-IQLQNLEILHLFSNNFT--------------------------------------------GKIPVA- 327 (968)
T ss_pred CeeccCCChhH-cCCCCCcEEECCCCccC--------------------------------------------CcCChh-
Confidence 66666555443 23333444433333332 222222
Q ss_pred hhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCC
Q 003200 548 CYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCT 627 (840)
Q Consensus 548 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 627 (840)
+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+..++
T Consensus 328 ---~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 404 (968)
T PLN00113 328 ---LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR 404 (968)
T ss_pred ---HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCC
Confidence 23367899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCccccc
Q 003200 628 ALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKS 707 (840)
Q Consensus 628 ~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~ 707 (840)
+|+.|++++|++++.+|..+. .+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+. .++|
T Consensus 405 ~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L----- 477 (968)
T PLN00113 405 SLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRL----- 477 (968)
T ss_pred CCCEEECcCCEeeeECChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-cccc-----
Confidence 999999999999999999887 799999999999999999999999999999999999999988887653 2444
Q ss_pred ccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccc
Q 003200 708 FTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSM 787 (840)
Q Consensus 708 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 787 (840)
+.||+++|++++.+|..+.++++|+.|++++|++.+.+|..++++++|++|+|++|++++.+|..+
T Consensus 478 --------------~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 543 (968)
T PLN00113 478 --------------ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF 543 (968)
T ss_pred --------------eEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCeEeccCCcccccCCCC-CcCCCcCcCCCCCCCC
Q 003200 788 SSLTFLNHLNLSNNNLTGKIPLS-TQLQSFNASSFAGNDL 826 (840)
Q Consensus 788 ~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~gn~l 826 (840)
..+++|++|++++|+++|.+|.. ..+..+....+.+|.+
T Consensus 544 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 544 SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred hCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence 99999999999999999999975 3344455555566633
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1e-40 Score=327.64 Aligned_cols=492 Identities=24% Similarity=0.331 Sum_probs=251.7
Q ss_pred CCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEE
Q 003200 106 KHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLD 185 (840)
Q Consensus 106 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 185 (840)
..++.|++++|.+. .+...+.++..|.+|++++|+++ .+|.+++.+.+++.++.++|.+..
T Consensus 45 v~l~~lils~N~l~--~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~---------------- 105 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE--VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSE---------------- 105 (565)
T ss_pred cchhhhhhccCchh--hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhh----------------
Confidence 34566677777766 34555666777777777777766 556667777666666666664431
Q ss_pred ccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcEEE
Q 003200 186 LRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLN 265 (840)
Q Consensus 186 Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 265 (840)
.+..++.+.+|..+++++|.+...+ +.++.+-.|..++..+|+++ ..|..+..+.+|..++
T Consensus 106 -----------lp~~i~s~~~l~~l~~s~n~~~el~-------~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~ 166 (565)
T KOG0472|consen 106 -----------LPEQIGSLISLVKLDCSSNELKELP-------DSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLD 166 (565)
T ss_pred -----------ccHHHhhhhhhhhhhccccceeecC-------chHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhh
Confidence 1112222222222222222222221 34444445555555555544 3344444444444444
Q ss_pred cccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEcc
Q 003200 266 LRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMR 345 (840)
Q Consensus 266 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 345 (840)
+.+|.+....| ..-+++.|+++|.-.
T Consensus 167 ~~~n~l~~l~~-~~i~m~~L~~ld~~~----------------------------------------------------- 192 (565)
T KOG0472|consen 167 LEGNKLKALPE-NHIAMKRLKHLDCNS----------------------------------------------------- 192 (565)
T ss_pred ccccchhhCCH-HHHHHHHHHhcccch-----------------------------------------------------
Confidence 44444442222 222244444444333
Q ss_pred CCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCccccee
Q 003200 346 SSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFE 425 (840)
Q Consensus 346 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~ 425 (840)
|-+ +.+|+.++.+.+|..|++..|++.. .| .|.+|..|++++++.|++. .+|+....+++++..||+.+|+++
T Consensus 193 -N~L-~tlP~~lg~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-- 265 (565)
T KOG0472|consen 193 -NLL-ETLPPELGGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-- 265 (565)
T ss_pred -hhh-hcCChhhcchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc--
Confidence 222 2244455556666666666666653 33 5666666666666666664 556555556666666666666655
Q ss_pred ccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCC
Q 003200 426 VKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKN 505 (840)
Q Consensus 426 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 505 (840)
..|+.+.-+.+|++||+++|.|++..+.. +.+ .|+.|.+.+|.+...-..+...
T Consensus 266 -----------------------e~Pde~clLrsL~rLDlSNN~is~Lp~sL--gnl-hL~~L~leGNPlrTiRr~ii~~ 319 (565)
T KOG0472|consen 266 -----------------------EVPDEICLLRSLERLDLSNNDISSLPYSL--GNL-HLKFLALEGNPLRTIRREIISK 319 (565)
T ss_pred -----------------------cCchHHHHhhhhhhhcccCCccccCCccc--ccc-eeeehhhcCCchHHHHHHHHcc
Confidence 34444444555555555555555544321 222 3444444444443221111100
Q ss_pred ---CcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcC
Q 003200 506 ---TQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLK 582 (840)
Q Consensus 506 ---~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 582 (840)
.-|++|.= ++...-+.... ++-.-.+..+.. ..| ......+.+
T Consensus 320 gT~~vLKyLrs---~~~~dglS~se-------~~~e~~~t~~~~-----------------------~~~-~~~~~i~tk 365 (565)
T KOG0472|consen 320 GTQEVLKYLRS---KIKDDGLSQSE-------GGTETAMTLPSE-----------------------SFP-DIYAIITTK 365 (565)
T ss_pred cHHHHHHHHHH---hhccCCCCCCc-------ccccccCCCCCC-----------------------ccc-chhhhhhhh
Confidence 00010000 00000000000 000000000000 011 111233444
Q ss_pred EEEccCCcCCCCCCcccCCC--CcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEcc
Q 003200 583 VLKLSNNKFSGNLPNSLGSI--TSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILR 660 (840)
Q Consensus 583 ~L~Ls~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~ 660 (840)
.|+++.-+++....+.|..- .-....++++|++. ++|..+..++.+.+.-+..|+..+.+|..+. .+++|..|+++
T Consensus 366 iL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~-~l~kLt~L~L~ 443 (565)
T KOG0472|consen 366 ILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELS-QLQKLTFLDLS 443 (565)
T ss_pred hhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHH-hhhcceeeecc
Confidence 55555555552222222211 11455556666655 5555555444443332222233335555554 46666666666
Q ss_pred CCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCccccc
Q 003200 661 SNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVT 740 (840)
Q Consensus 661 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~ 740 (840)
+|-+. .+|..++.+..||+||+|.|+|. .+|+++..+..+ +.+-.++|++....|+.+.
T Consensus 444 NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l-------------------Etllas~nqi~~vd~~~l~ 502 (565)
T KOG0472|consen 444 NNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL-------------------ETLLASNNQIGSVDPSGLK 502 (565)
T ss_pred cchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH-------------------HHHHhccccccccChHHhh
Confidence 66555 55666677777888888888887 778777766555 5666677888766666688
Q ss_pred CCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCccc
Q 003200 741 NLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLS 780 (840)
Q Consensus 741 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 780 (840)
++.+|++|||.+|.+. .+|..+++|++|++|++++|++.
T Consensus 503 nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 503 NMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 8888888888888888 67777888888888888888886
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7.3e-37 Score=313.83 Aligned_cols=371 Identities=21% Similarity=0.220 Sum_probs=302.6
Q ss_pred CCCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEE
Q 003200 337 NGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFR 416 (840)
Q Consensus 337 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~ 416 (840)
+..+.|++++|.+...-+..|.++++|+++++.+|.++ .+|...+...+|+.|+|.+|.+. ++....+..++.|+.||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLD 155 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhh
Confidence 36677888888888877778888888888888888887 44654444555888888888886 66666788888888888
Q ss_pred ccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccc
Q 003200 417 VGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFH 496 (840)
Q Consensus 417 L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~ 496 (840)
|+.|.|+......|....++++|++++|.++......|..+.+|..|.++.|+++.+.+..| +.+++|+.|++..|++.
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~F-k~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSF-KRLPKLESLDLNRNRIR 234 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHh-hhcchhhhhhcccccee
Confidence 88888888777777777888888888888888888888888889999999999888877665 66778888877777765
Q ss_pred cccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCcccc
Q 003200 497 GKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWM 576 (840)
Q Consensus 497 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 576 (840)
.. -...|.++++|+.|.+..|.+......+|.
T Consensus 235 iv------------------------------------------------e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy 266 (873)
T KOG4194|consen 235 IV------------------------------------------------EGLTFQGLPSLQNLKLQRNDISKLDDGAFY 266 (873)
T ss_pred ee------------------------------------------------hhhhhcCchhhhhhhhhhcCcccccCccee
Confidence 21 012345678889999999998877778899
Q ss_pred CCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccE
Q 003200 577 SYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLV 656 (840)
Q Consensus 577 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~ 656 (840)
.+.++++|+|+.|++...-..++-++++|+.|+++.|.|..+.+.++..+++|++|+|++|+++..-+..|. .+..|++
T Consensus 267 ~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~-~L~~Le~ 345 (873)
T KOG4194|consen 267 GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR-VLSQLEE 345 (873)
T ss_pred eecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH-HHHHhhh
Confidence 999999999999999987778888999999999999999988889999999999999999999855555554 7899999
Q ss_pred EEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCc
Q 003200 657 LILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEIL 736 (840)
Q Consensus 657 L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~ 736 (840)
|+|++|++...-..+|..+++|++|||++|.+++.+.+.-.-... +++|+.|++.+|++....-
T Consensus 346 LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g----------------l~~LrkL~l~gNqlk~I~k 409 (873)
T KOG4194|consen 346 LNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG----------------LPSLRKLRLTGNQLKSIPK 409 (873)
T ss_pred hcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhcc----------------chhhhheeecCceeeecch
Confidence 999999999888888999999999999999998776653222211 3555899999999986666
Q ss_pred ccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCC
Q 003200 737 SEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSV 776 (840)
Q Consensus 737 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 776 (840)
.+|..+.+|+.|||.+|.+..+.|++|..+ .|+.|-+..
T Consensus 410 rAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 410 RAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 789999999999999999998999999988 888886643
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-36 Score=311.11 Aligned_cols=357 Identities=25% Similarity=0.268 Sum_probs=231.2
Q ss_pred cEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCE
Q 003200 262 ECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLES 341 (840)
Q Consensus 262 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 341 (840)
+.|++++|.+....+..|.++++|+++++.. |.+ ..+|...+...+++.|+|.+|.++..-.+.+..++ .|++
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~L-t~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~-----alrs 153 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NEL-TRIPRFGHESGHLEKLDLRHNLISSVTSEELSALP-----ALRS 153 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeecc-chh-hhcccccccccceeEEeeeccccccccHHHHHhHh-----hhhh
Confidence 4466666666666666666677777776665 333 35666555666788888888888877777777777 8899
Q ss_pred EEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcc
Q 003200 342 LDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQ 421 (840)
Q Consensus 342 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~ 421 (840)
||++.|.++...-..|..-.++++|+|++|.|+..-...|.++.+|..|.|++|+++ .+|...|.++++|+.|+|..|.
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccc
Confidence 999999888876667777788999999999999888888999999999999999997 8888899999999999999999
Q ss_pred cceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCccccccccc
Q 003200 422 LTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISN 501 (840)
Q Consensus 422 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 501 (840)
|.......|.++++|+.|.+..|.+.......|..+.++++|+++.|+++..-..+++
T Consensus 233 irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf---------------------- 290 (873)
T KOG4194|consen 233 IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF---------------------- 290 (873)
T ss_pred eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc----------------------
Confidence 8876666666666666666666666655555566666666666666555544333321
Q ss_pred ccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCc
Q 003200 502 LTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNL 581 (840)
Q Consensus 502 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 581 (840)
++++|+.|++|+|.|...-++.+.-+++|
T Consensus 291 ---------------------------------------------------gLt~L~~L~lS~NaI~rih~d~WsftqkL 319 (873)
T KOG4194|consen 291 ---------------------------------------------------GLTSLEQLDLSYNAIQRIHIDSWSFTQKL 319 (873)
T ss_pred ---------------------------------------------------ccchhhhhccchhhhheeecchhhhcccc
Confidence 23445555555555554445555555555
Q ss_pred CEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCCh--hhhhccCCccEEEc
Q 003200 582 KVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPT--WFGERFSRMLVLIL 659 (840)
Q Consensus 582 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~--~~~~~l~~L~~L~l 659 (840)
++|+|++|+++...++.|..+..|++|+|++|++...-...|..+++|++|||++|.++..+.+ ..+.++++|+.|.+
T Consensus 320 ~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 320 KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL 399 (873)
T ss_pred eeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence 5555555555544445555555555555555555544444455555555555555555444332 12224555555555
Q ss_pred cCCcccccCCccccCccccceeecccccccccCCcccccc
Q 003200 660 RSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNL 699 (840)
Q Consensus 660 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 699 (840)
.+|++..+...+|.++..|+.|||.+|.+....|.+|..+
T Consensus 400 ~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 400 TGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred cCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 5555554444555555555555555555554445555443
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2e-38 Score=311.52 Aligned_cols=181 Identities=24% Similarity=0.424 Sum_probs=150.8
Q ss_pred CCCcccEEEccCCcCcCCCCcccccCCC---CcEEeCCCCcccccCChhhhhccCCccE-EEccCCcccccCCccccCcc
Q 003200 601 SITSLVWLYLRKNRLSGKIPISLKNCTA---LASLDVDENEFVGNIPTWFGERFSRMLV-LILRSNQFHGPLPKTICDLA 676 (840)
Q Consensus 601 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~ls~N~l~~~~p~~~~~~l~~L~~-L~l~~n~l~~~~p~~l~~l~ 676 (840)
...+.+.|++++-+++ .+|........ ....+++.|++. ++|..+. .+..+.+ +.+++|.++ .+|..++.++
T Consensus 360 ~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~-~lkelvT~l~lsnn~is-fv~~~l~~l~ 435 (565)
T KOG0472|consen 360 AIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLV-ELKELVTDLVLSNNKIS-FVPLELSQLQ 435 (565)
T ss_pred hhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhH-HHHHHHHHHHhhcCccc-cchHHHHhhh
Confidence 3457888999998888 66665544333 788999999997 8898776 3455544 455555554 7888999999
Q ss_pred ccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCccc
Q 003200 677 FLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFT 756 (840)
Q Consensus 677 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 756 (840)
.|..|++++|.+. .+|..++.+..| +.||+|.|+|. .+|..+..+..|+.+-.++|++.
T Consensus 436 kLt~L~L~NN~Ln-~LP~e~~~lv~L-------------------q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~ 494 (565)
T KOG0472|consen 436 KLTFLDLSNNLLN-DLPEEMGSLVRL-------------------QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIG 494 (565)
T ss_pred cceeeecccchhh-hcchhhhhhhhh-------------------heecccccccc-cchHHHhhHHHHHHHHhcccccc
Confidence 9999999999887 899988888777 89999999998 78888888888888888889999
Q ss_pred ccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCC
Q 003200 757 GRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPL 809 (840)
Q Consensus 757 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 809 (840)
...|+.+.+|.+|.+|||.+|.+. .+|..+++|++|++|++++|++. .|.
T Consensus 495 ~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr 544 (565)
T KOG0472|consen 495 SVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPR 544 (565)
T ss_pred ccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCH
Confidence 766777999999999999999998 89999999999999999999998 454
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-36 Score=324.73 Aligned_cols=243 Identities=26% Similarity=0.411 Sum_probs=151.2
Q ss_pred CCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCccc
Q 003200 527 SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLV 606 (840)
Q Consensus 527 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 606 (840)
.+++++++++|++++.. .++ ..+.+|+.++..+|.++ .+|..+...++|+.|.+.+|.+. .+|.......+|+
T Consensus 241 ~nl~~~dis~n~l~~lp-~wi----~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~ 313 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLP-EWI----GACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLR 313 (1081)
T ss_pred ccceeeecchhhhhcch-HHH----HhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceee
Confidence 34555555555555432 333 33667777777777775 55666666677777777777776 4455566677777
Q ss_pred EEEccCCcCcCCCCccc-ccCC-CCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecc
Q 003200 607 WLYLRKNRLSGKIPISL-KNCT-ALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLA 684 (840)
Q Consensus 607 ~L~L~~n~l~~~~p~~l-~~l~-~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls 684 (840)
+|+|..|++. ..|..+ .-.. +|+.|+.+.|++. ..|..-....+.|+.|.+.+|.++...-..+.+...|+.|+|+
T Consensus 314 tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLs 391 (1081)
T KOG0618|consen 314 TLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLS 391 (1081)
T ss_pred eeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeec
Confidence 7777777776 444432 2222 2566666666665 4443333345566777777777776666666667777777777
Q ss_pred cccccccCC-ccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcch
Q 003200 685 DNNLSGAIP-KCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESI 763 (840)
Q Consensus 685 ~N~l~~~~p-~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l 763 (840)
+|++. .+| ..+.++..| +.|+||+|+++ .+|..+.++..|++|...+|++. ..| .+
T Consensus 392 yNrL~-~fpas~~~kle~L-------------------eeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~ 448 (1081)
T KOG0618|consen 392 YNRLN-SFPASKLRKLEEL-------------------EELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-EL 448 (1081)
T ss_pred ccccc-cCCHHHHhchHHh-------------------HHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hh
Confidence 77776 333 344444444 67777777776 56677777777777777777777 556 56
Q ss_pred hccCCCCeEeCCCCccccc-CCccccCCCCCCeEeccCCc
Q 003200 764 GTMRALESVDFSVNQLSGE-IPQSMSSLTFLNHLNLSNNN 802 (840)
Q Consensus 764 ~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~ls~N~ 802 (840)
.++++|+.+|+|.|+++.. +|..... ++|++||+++|.
T Consensus 449 ~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 7777777777777777632 3333332 667777777775
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.3e-34 Score=313.61 Aligned_cols=356 Identities=24% Similarity=0.266 Sum_probs=168.6
Q ss_pred ccCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCC
Q 003200 231 LQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNL 310 (840)
Q Consensus 231 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L 310 (840)
..++.+|+++.|.+|.+. ..|..+..+++|++|+++.|.+. .+|..+..++.++.+..++| .....++ ... +
T Consensus 87 ~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N-~~~~~lg----~~~-i 158 (1081)
T KOG0618|consen 87 CSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNN-EKIQRLG----QTS-I 158 (1081)
T ss_pred hhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcc-hhhhhhc----ccc-c
Confidence 344444444444444433 34444444444444444444443 34444444444444444442 1111111 111 5
Q ss_pred cEEEcCCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEE
Q 003200 311 KSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLREL 390 (840)
Q Consensus 311 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 390 (840)
+.+++..+.+.+.++..++.+. . .|++.+|.+. -..+..+.+|+.+....|++.... ..-++|+.|
T Consensus 159 k~~~l~~n~l~~~~~~~i~~l~-----~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L 224 (1081)
T KOG0618|consen 159 KKLDLRLNVLGGSFLIDIYNLT-----H--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE----ISGPSLTAL 224 (1081)
T ss_pred hhhhhhhhhcccchhcchhhhh-----e--eeecccchhh---hhhhhhccchhhhhhhhcccceEE----ecCcchhee
Confidence 5555555555555555554332 2 4667776665 123456777888888888776431 123678888
Q ss_pred EccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCC
Q 003200 391 QIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRI 470 (840)
Q Consensus 391 ~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i 470 (840)
+.+.|.++ ++.. -..-.+|+++++++|+++ ..|.|+..+.+|+.+++.+|++
T Consensus 225 ~a~~n~l~-~~~~--~p~p~nl~~~dis~n~l~-------------------------~lp~wi~~~~nle~l~~n~N~l 276 (1081)
T KOG0618|consen 225 YADHNPLT-TLDV--HPVPLNLQYLDISHNNLS-------------------------NLPEWIGACANLEALNANHNRL 276 (1081)
T ss_pred eeccCcce-eecc--ccccccceeeecchhhhh-------------------------cchHHHHhcccceEecccchhH
Confidence 88888776 2211 111123344444444333 2335555555555555555555
Q ss_pred CCCcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhc
Q 003200 471 SDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYR 550 (840)
Q Consensus 471 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 550 (840)
+......+ ...+|+.+.+.+|.+.-..+...
T Consensus 277 ~~lp~ri~--~~~~L~~l~~~~nel~yip~~le----------------------------------------------- 307 (1081)
T KOG0618|consen 277 VALPLRIS--RITSLVSLSAAYNELEYIPPFLE----------------------------------------------- 307 (1081)
T ss_pred HhhHHHHh--hhhhHHHHHhhhhhhhhCCCccc-----------------------------------------------
Confidence 33322211 12333333333333332222211
Q ss_pred cCCCCcccEEeccCCcCccccCccccCCC-CcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCC
Q 003200 551 VNETKSLEGLKLTDNYLQGEIPDCWMSYQ-NLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTAL 629 (840)
Q Consensus 551 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 629 (840)
..++|++|+|..|++....+..+.... +|+.|+.+.|++....-..=...+.|+.|++.+|+++...-..+.+.++|
T Consensus 308 --~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hL 385 (1081)
T KOG0618|consen 308 --GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHL 385 (1081)
T ss_pred --ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccce
Confidence 134444444444444422211122221 14444445555442211111123456666666666665555556666666
Q ss_pred cEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeeccccccc
Q 003200 630 ASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLS 689 (840)
Q Consensus 630 ~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 689 (840)
+.|++++|++. .+|+.....+..|+.|+|++|+++ .+|..+..+..|++|...+|.+.
T Consensus 386 KVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 386 KVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL 443 (1081)
T ss_pred eeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee
Confidence 66666666664 555555445555555555555554 33445555555555555555554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.1e-32 Score=284.84 Aligned_cols=202 Identities=26% Similarity=0.366 Sum_probs=120.2
Q ss_pred CCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCC-CCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEE
Q 003200 554 TKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFS-GNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASL 632 (840)
Q Consensus 554 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 632 (840)
+..|+.|+|++|.+...--..+..+++|++|.+++.+-+ ..+|.++..+.+|..++++.|.+. .+|+++.++++|+.|
T Consensus 172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrL 250 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRL 250 (1255)
T ss_pred HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhhee
Confidence 345666666666554332233444556666666665433 245666666666777777777665 666666666777777
Q ss_pred eCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeeccccccc-ccCCccccccccCcccccccCc
Q 003200 633 DVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLS-GAIPKCISNLTGMVTVKSFTGS 711 (840)
Q Consensus 633 ~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~l~~~~~~ 711 (840)
++|+|+++ .+..... ...+|++|+++.|+++ .+|.+++.++.|+.|++.+|+++ .-+|..|+.+..|
T Consensus 251 NLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L--------- 318 (1255)
T KOG0444|consen 251 NLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL--------- 318 (1255)
T ss_pred ccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh---------
Confidence 77777666 4443333 3456666666666666 55666666666666666666654 2345555555554
Q ss_pred ccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCccc
Q 003200 712 VVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLS 780 (840)
Q Consensus 712 ~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 780 (840)
+.+..++|.+. ..|+.+..+..|+.|.|++|++. .+|+.+.-++.|+.||+..|.-.
T Consensus 319 ----------evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 319 ----------EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred ----------HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 55555555554 55666666666666666666665 56666666666666666666544
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=3e-31 Score=274.18 Aligned_cols=182 Identities=20% Similarity=0.334 Sum_probs=132.2
Q ss_pred CCcccEEeccCCcCc-cccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEE
Q 003200 554 TKSLEGLKLTDNYLQ-GEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASL 632 (840)
Q Consensus 554 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 632 (840)
+++|++|.+++.+-+ ..+|..+..+.+|..+|+|.|.+. ..|+++-.+.+|+.|+|++|+|+ .+......-.+|++|
T Consensus 196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtL 273 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETL 273 (1255)
T ss_pred chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhh
Confidence 466777777775433 356777777777888888888777 67777777778888888888776 444455555677778
Q ss_pred eCCCCcccccCChhhhhccCCccEEEccCCcccc-cCCccccCccccceeecccccccccCCccccccccCcccccccCc
Q 003200 633 DVDENEFVGNIPTWFGERFSRMLVLILRSNQFHG-PLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGS 711 (840)
Q Consensus 633 ~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~ 711 (840)
++|+|+++ .+|+.++ .+++|+.|.+.+|+++. -+|..++.+.+|+.+..++|++. .+|+.+..+..|
T Consensus 274 NlSrNQLt-~LP~avc-KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL--------- 341 (1255)
T KOG0444|consen 274 NLSRNQLT-VLPDAVC-KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL--------- 341 (1255)
T ss_pred ccccchhc-cchHHHh-hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHH---------
Confidence 88888877 7777777 67777777777777653 36777777777887777777776 777777777666
Q ss_pred ccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCC
Q 003200 712 VVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIP 760 (840)
Q Consensus 712 ~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 760 (840)
+.|.|++|++. .+|+.+.-++.|+.||+..|.-..-.|
T Consensus 342 ----------~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 342 ----------QKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ----------HHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 67777888776 677777777788888887776553333
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=8e-26 Score=222.99 Aligned_cols=290 Identities=23% Similarity=0.179 Sum_probs=156.7
Q ss_pred CCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccC-cCCCCCcchhhhcCCCCCCCEE
Q 003200 132 NLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRS-VNLSKASDWLMATNTLPSLLEL 210 (840)
Q Consensus 132 ~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~l~~L~~L 210 (840)
.-..++|..|+|+.+.|.+|+.+++|+.||||+|.|+.+.+.+|.+++.|..|-+.+ |+|+.++. ..|+.+..|+.|
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k--~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK--GAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh--hHhhhHHHHHHH
Confidence 344555666666655555666666666666666666666666666666555554433 55555432 122223333333
Q ss_pred EcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccCccccccchhhhcCCCCcEEec
Q 003200 211 RLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDL 290 (840)
Q Consensus 211 ~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 290 (840)
.+.-|.+..+.. +.|..+++|..|.+.+|.+...--..|..+..++.+.+..|.+.. ..+++.+...
T Consensus 146 llNan~i~Cir~------~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~-- 212 (498)
T KOG4237|consen 146 LLNANHINCIRQ------DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADD-- 212 (498)
T ss_pred hcChhhhcchhH------HHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhhH--
Confidence 333333332222 445555555555555555542222245555555555555554321 1111111111
Q ss_pred ccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCc-cccCCCCCCCEEEcc
Q 003200 291 SINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLT-DQLGQFRNLVTLNLA 369 (840)
Q Consensus 291 ~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~ 369 (840)
....|..++.........+...++....+..+... ...+.+-..+.+...+..| ..|..+++|++|+++
T Consensus 213 ------~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~----~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls 282 (498)
T KOG4237|consen 213 ------LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS----LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS 282 (498)
T ss_pred ------HhhchhhcccceecchHHHHHHHhcccchhhhhhh----HHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence 11122223333333333333333332222221110 0011111112222222233 367888889999999
Q ss_pred CCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEecccccCC
Q 003200 370 NNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVG 447 (840)
Q Consensus 370 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~ 447 (840)
+|+++++-+.+|.+..++++|.|..|++. .+....|.++..|+.|+|.+|+|+...+..|.+...|.+|.+-.|.+.
T Consensus 283 nN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 283 NNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred CCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 99988888888888888899999888886 677778888888888888888888888777777777777777666543
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=2.2e-25 Score=219.91 Aligned_cols=405 Identities=19% Similarity=0.206 Sum_probs=228.7
Q ss_pred CCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccC-CccccccChhhhccCCCCCEEE
Q 003200 338 GLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYD-NKLNGTLSEFHFANLTKLSWFR 416 (840)
Q Consensus 338 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~i~~~~~~~l~~L~~L~ 416 (840)
....++|..|+|+...+.+|+.+++|+.|||++|.|+.+-|.+|.++++|..|.+.+ |+|+ .++...|.++.+|+.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence 455666666666666666666666666666666666666666666666666665555 5554 56666666666666666
Q ss_pred ccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCC------------cchHHHhccCC
Q 003200 417 VGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDI------------FPIRFLKSASQ 484 (840)
Q Consensus 417 L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~------------~~~~~~~~l~~ 484 (840)
+.-|++.......+..++.+..|.+.+|.+....-..|..+..++.+.+..|.+... .+..+ +....
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet-sgarc 225 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET-SGARC 225 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc-cccee
Confidence 666666666666666666666666666666555555666666666666666652211 00000 11111
Q ss_pred ccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccC
Q 003200 485 LKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTD 564 (840)
Q Consensus 485 L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 564 (840)
..-..+.+.++...-+.-+.. .++.+ ..--.+.+...+..|. ..+..+++|+.|++++
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c-~~esl------------------~s~~~~~d~~d~~cP~---~cf~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLC-SLESL------------------PSRLSSEDFPDSICPA---KCFKKLPNLRKLNLSN 283 (498)
T ss_pred cchHHHHHHHhcccchhhhhh-hHHhH------------------HHhhccccCcCCcChH---HHHhhcccceEeccCC
Confidence 111112222222111100000 00000 0000111112222222 1256688899999999
Q ss_pred CcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccC-
Q 003200 565 NYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNI- 643 (840)
Q Consensus 565 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~- 643 (840)
|+++++-+.+|.+...+++|.|..|++...-...|.++..|+.|+|++|+|+...|.+|..+.+|.+|++-.|.+...-
T Consensus 284 N~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~ 363 (498)
T KOG4237|consen 284 NKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCR 363 (498)
T ss_pred CccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccc
Confidence 9999888888999999999999999988766677888889999999999999888888988889999998888765321
Q ss_pred ChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccc---cCCcc---------ccccccCcccccccCc
Q 003200 644 PTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSG---AIPKC---------ISNLTGMVTVKSFTGS 711 (840)
Q Consensus 644 p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~---~~p~~---------~~~l~~L~~l~~~~~~ 711 (840)
-.|+++.+ +.+...|..|- +....++.++++++.+.. ..|+. -..++.+.
T Consensus 364 l~wl~~Wl--------r~~~~~~~~~C--q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~-------- 425 (498)
T KOG4237|consen 364 LAWLGEWL--------RKKSVVGNPRC--QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLD-------- 425 (498)
T ss_pred hHHHHHHH--------hhCCCCCCCCC--CCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhh--------
Confidence 23333221 11222222221 122335555555554331 12221 12222222
Q ss_pred ccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCC
Q 003200 712 VVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLT 791 (840)
Q Consensus 712 ~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 791 (840)
++...|+..+. .+|..+. ..-++|++.+|.++ .+|.+ .+.+| .+|+|+|+++..--..|++|+
T Consensus 426 ----------tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~t 488 (498)
T KOG4237|consen 426 ----------TVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMT 488 (498)
T ss_pred ----------hhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchh
Confidence 22333444333 4444332 13455667777777 56655 55666 777777777644445677777
Q ss_pred CCCeEeccCC
Q 003200 792 FLNHLNLSNN 801 (840)
Q Consensus 792 ~L~~L~ls~N 801 (840)
.|.+|-+|||
T Consensus 489 ql~tlilsyn 498 (498)
T KOG4237|consen 489 QLSTLILSYN 498 (498)
T ss_pred hhheeEEecC
Confidence 7777777765
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=3.1e-21 Score=236.17 Aligned_cols=198 Identities=20% Similarity=0.237 Sum_probs=97.1
Q ss_pred cChhhhccCCCCCEEEccCccc------ceeccCCCCC-ccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCC
Q 003200 401 LSEFHFANLTKLSWFRVGGNQL------TFEVKHDWIP-PFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDI 473 (840)
Q Consensus 401 i~~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~ 473 (840)
+....|.++++|+.|.+..+.. ....+..+.. +.+|+.|.+.++.+. ..|..+ ...+|++|++.+|++...
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccccc
Confidence 3444567777777777654432 1122222222 234666666665543 334444 356777777777776654
Q ss_pred cchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCC---CCCCcEEEccCCcCcccCCchhhhc
Q 003200 474 FPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLV---SSNLVYLDFSNNSFSGSISHFLCYR 550 (840)
Q Consensus 474 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~ 550 (840)
... ...+++|+.++++++.....+|.+...++|+.|++.+|.....+|.. +++|+.|++++|.....+|...
T Consensus 627 ~~~--~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--- 701 (1153)
T PLN03210 627 WDG--VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--- 701 (1153)
T ss_pred ccc--cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC---
Confidence 332 13566677777776655555555555566666666655544444433 3444555555443333333211
Q ss_pred cCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccC
Q 003200 551 VNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRK 612 (840)
Q Consensus 551 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 612 (840)
.+++|+.|++++|...+.+|.. ..+|++|++++|.+. .+|..+ .+++|+.|++.+
T Consensus 702 --~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~ 756 (1153)
T PLN03210 702 --NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCE 756 (1153)
T ss_pred --CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccc
Confidence 2344555555544433333321 234444555554443 233322 234444444443
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=4.5e-21 Score=234.75 Aligned_cols=339 Identities=17% Similarity=0.167 Sum_probs=225.6
Q ss_pred CCCCCccCccEEecccccC------CCCCCccccCC-CCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccc
Q 003200 428 HDWIPPFQLVALGLHNCYV------GSRFPQWLHSQ-KHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKIS 500 (840)
Q Consensus 428 ~~~~~~~~L~~L~l~~~~~------~~~~~~~l~~l-~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 500 (840)
..|..+.+|+.|.+..+.. ...+|..+..+ .+|+.|++.++.+...+.. | .+.+|+.|++.+|++.....
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-f--~~~~L~~L~L~~s~l~~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-F--RPENLVKLQMQGSKLEKLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc-C--CccCCcEEECcCcccccccc
Confidence 3455667777777754422 22345555554 3577777777776555432 2 34677777777777765555
Q ss_pred cccCCCcccEEEcccCcCCCCCCCC--CCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCC
Q 003200 501 NLTKNTQLLFLSVNSNNMSGPLPLV--SSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSY 578 (840)
Q Consensus 501 ~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 578 (840)
.....++|+.++++++...+.+|.. +++|+.|++++|.....+|.. +..+++|+.|++++|...+.+|..+ ++
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~s----i~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSS----IQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchh----hhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 5556677777777776555555543 567777777777655555543 3446777777777765444566544 56
Q ss_pred CCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccc------cCChhhhhccC
Q 003200 579 QNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVG------NIPTWFGERFS 652 (840)
Q Consensus 579 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~------~~p~~~~~~l~ 652 (840)
++|+.|++++|...+.+|.. ..+|++|++++|.+. .+|..+ .+++|+.|++.++.... .++.......+
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccc
Confidence 77777777777655555532 346777777777765 455544 45667777776543210 11111111346
Q ss_pred CccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCccc
Q 003200 653 RMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFS 732 (840)
Q Consensus 653 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 732 (840)
+|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ ++++ |+.|++++|...
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~s-------------------L~~L~Ls~c~~L 838 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLES-------------------LESLDLSGCSRL 838 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Cccc-------------------cCEEECCCCCcc
Confidence 78888888887777778888888888888888876555666654 3444 489999998765
Q ss_pred ccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcc
Q 003200 733 GEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNL 803 (840)
Q Consensus 733 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 803 (840)
..+|.. .++|+.|+|++|.++ .+|.++..+++|+.|++++|+-...+|..+..++.|+.+++++|.-
T Consensus 839 ~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 839 RTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred cccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 555543 367899999999998 7899999999999999999655557888889999999999998853
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1e-21 Score=221.89 Aligned_cols=154 Identities=22% Similarity=0.307 Sum_probs=71.9
Q ss_pred CCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCc
Q 003200 459 HLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNS 538 (840)
Q Consensus 459 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~ 538 (840)
.-..|+++++.++.+++ .+ .++++.|++++|+++..+ . ..++|++|++++|+++. +|..+++|+.|++++|.
T Consensus 202 ~~~~LdLs~~~LtsLP~-~l---~~~L~~L~L~~N~Lt~LP-~--lp~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~ 273 (788)
T PRK15387 202 GNAVLNVGESGLTTLPD-CL---PAHITTLVIPDNNLTSLP-A--LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNP 273 (788)
T ss_pred CCcEEEcCCCCCCcCCc-ch---hcCCCEEEccCCcCCCCC-C--CCCCCcEEEecCCccCc-ccCcccccceeeccCCc
Confidence 35567777777775433 22 135667777777666432 1 12455555555555553 23344455555555555
Q ss_pred CcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCC
Q 003200 539 FSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGK 618 (840)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 618 (840)
+..... . .++|+.|++++|+++. +|.. .++|++|++++|++++ +|.. ..+|+.|++++|++++
T Consensus 274 L~~Lp~-l-------p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 274 LTHLPA-L-------PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS- 336 (788)
T ss_pred hhhhhh-c-------hhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-
Confidence 443211 0 1344455555555542 2221 2345555555555543 2221 1234444555555442
Q ss_pred CCcccccCCCCcEEeCCCCccc
Q 003200 619 IPISLKNCTALASLDVDENEFV 640 (840)
Q Consensus 619 ~p~~l~~l~~L~~L~ls~N~l~ 640 (840)
+|.. ..+|+.|++++|+++
T Consensus 337 LP~l---p~~Lq~LdLS~N~Ls 355 (788)
T PRK15387 337 LPTL---PSGLQELSVSDNQLA 355 (788)
T ss_pred cccc---ccccceEecCCCccC
Confidence 3321 124444555555444
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.6e-21 Score=220.25 Aligned_cols=262 Identities=24% Similarity=0.284 Sum_probs=148.0
Q ss_pred CccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEecc
Q 003200 484 QLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLT 563 (840)
Q Consensus 484 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls 563 (840)
.-..|+++.+.++..++.+. .+++.|++.+|+++. +|..+++|++|++++|+++.. |.. .++|+.|+++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~LtsL-P~l-------p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSL-PVL-------PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCC-CCCCCCCCcEEEecCCccCcc-cCc-------ccccceeecc
Confidence 34566666666664333232 356666666666664 444556666666666666643 221 2456666666
Q ss_pred CCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccC
Q 003200 564 DNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNI 643 (840)
Q Consensus 564 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ 643 (840)
+|.++ .+|.. ..+|+.|++++|+++. +|.. .++|+.|++++|++++ +|.. ..+|+.|++++|.++ .+
T Consensus 271 ~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~L 337 (788)
T PRK15387 271 SNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SL 337 (788)
T ss_pred CCchh-hhhhc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc-cc
Confidence 66665 23332 2456666666666663 3331 3556666666666663 3332 134566666666665 34
Q ss_pred ChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceE
Q 003200 644 PTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSL 723 (840)
Q Consensus 644 p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~ 723 (840)
|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|.+. .+|... . .|+.
T Consensus 338 P~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l~---~-------------------~L~~ 386 (788)
T PRK15387 338 PTL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP---S-------------------GLKE 386 (788)
T ss_pred ccc----ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCcccc---c-------------------ccce
Confidence 431 2456666666666664 3332 245666666666666 344322 1 2256
Q ss_pred EeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcc
Q 003200 724 LDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNL 803 (840)
Q Consensus 724 L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 803 (840)
|++++|++++ +|.. .++|+.|++++|+++ .+|... .+|+.|++++|+++ .+|..+.++++|+.|++++|+|
T Consensus 387 LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 387 LIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred EEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCC
Confidence 6666666663 4432 245666666666666 355432 34566666666666 5666666666666677777766
Q ss_pred cccCCC
Q 003200 804 TGKIPL 809 (840)
Q Consensus 804 ~g~ip~ 809 (840)
+|.+|.
T Consensus 458 s~~~~~ 463 (788)
T PRK15387 458 SERTLQ 463 (788)
T ss_pred CchHHH
Confidence 666554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=1.3e-19 Score=206.49 Aligned_cols=204 Identities=26% Similarity=0.429 Sum_probs=88.8
Q ss_pred cccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCC
Q 003200 556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVD 635 (840)
Q Consensus 556 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls 635 (840)
+|+.|++++|+++ .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|+++
T Consensus 221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls 291 (754)
T PRK15370 221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVY 291 (754)
T ss_pred CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECC
Confidence 4444444444444 2233221 23444555555444 3333332 24455555555444 2333332 245555555
Q ss_pred CCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccccc
Q 003200 636 ENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYR 715 (840)
Q Consensus 636 ~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~ 715 (840)
+|+++ .+|..+. ++|+.|++++|+++. +|..+ .++|+.|++++|.++ .+|..+.
T Consensus 292 ~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~------------------ 345 (754)
T PRK15370 292 DNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALT-SLPASLP------------------ 345 (754)
T ss_pred CCccc-cCcccch---hhHHHHHhcCCcccc-CCccc--cccceeccccCCccc-cCChhhc------------------
Confidence 55544 2333221 234445555555543 22222 134555555555554 2333221
Q ss_pred ccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCcccc----CCC
Q 003200 716 EILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMS----SLT 791 (840)
Q Consensus 716 ~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~----~l~ 791 (840)
++|+.|++++|+++ .+|..+. +.|+.|++++|+++ .+|..+. .+|+.|++++|+++ .+|..+. .++
T Consensus 346 ---~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~ 415 (754)
T PRK15370 346 ---PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGP 415 (754)
T ss_pred ---CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCC
Confidence 12255555555554 2343332 34555555555555 3444333 24555555555554 3343322 224
Q ss_pred CCCeEeccCCccc
Q 003200 792 FLNHLNLSNNNLT 804 (840)
Q Consensus 792 ~L~~L~ls~N~l~ 804 (840)
.+..+++.+|+++
T Consensus 416 ~l~~L~L~~Npls 428 (754)
T PRK15370 416 QPTRIIVEYNPFS 428 (754)
T ss_pred CccEEEeeCCCcc
Confidence 4555555555553
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=1.1e-19 Score=207.21 Aligned_cols=246 Identities=24% Similarity=0.376 Sum_probs=144.0
Q ss_pred CCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCc
Q 003200 459 HLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNS 538 (840)
Q Consensus 459 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~ 538 (840)
+...|++++++++.++.. + .+.++.|++++|+++..... .+++|++|++++|+
T Consensus 179 ~~~~L~L~~~~LtsLP~~-I---p~~L~~L~Ls~N~LtsLP~~-----------------------l~~nL~~L~Ls~N~ 231 (754)
T PRK15370 179 NKTELRLKILGLTTIPAC-I---PEQITTLILDNNELKSLPEN-----------------------LQGNIKTLYANSNQ 231 (754)
T ss_pred CceEEEeCCCCcCcCCcc-c---ccCCcEEEecCCCCCcCChh-----------------------hccCCCEEECCCCc
Confidence 456677777766654321 1 24566666666666543222 23445555555555
Q ss_pred CcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCC
Q 003200 539 FSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGK 618 (840)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 618 (840)
++.. |..+ ..+|+.|++++|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++ .
T Consensus 232 LtsL-P~~l------~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~ 297 (754)
T PRK15370 232 LTSI-PATL------PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-T 297 (754)
T ss_pred cccC-Chhh------hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-c
Confidence 5432 2211 135666666666666 4454442 35667777777666 3454443 46777777777666 3
Q ss_pred CCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccc
Q 003200 619 IPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISN 698 (840)
Q Consensus 619 ~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 698 (840)
+|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+.
T Consensus 298 LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp- 366 (754)
T PRK15370 298 LPAHLP--SGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP- 366 (754)
T ss_pred Ccccch--hhHHHHHhcCCccc-cCCccc---cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc-
Confidence 444332 35667777777776 355443 2567777777777764 454442 56777777777776 4554332
Q ss_pred cccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchh----ccCCCCeEeC
Q 003200 699 LTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIG----TMRALESVDF 774 (840)
Q Consensus 699 l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~----~l~~L~~L~L 774 (840)
+.|+.|++++|+++ .+|..+. ..|+.|++++|+++ .+|..+. .++.+..|++
T Consensus 367 --------------------~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L 422 (754)
T PRK15370 367 --------------------PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIV 422 (754)
T ss_pred --------------------CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEe
Confidence 23377777777777 4555554 35777778888777 5555443 3467777888
Q ss_pred CCCccc
Q 003200 775 SVNQLS 780 (840)
Q Consensus 775 s~N~l~ 780 (840)
.+|+++
T Consensus 423 ~~Npls 428 (754)
T PRK15370 423 EYNPFS 428 (754)
T ss_pred eCCCcc
Confidence 888776
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=2e-19 Score=191.93 Aligned_cols=257 Identities=21% Similarity=0.234 Sum_probs=142.9
Q ss_pred CCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCcc------ccCccccCCCCcCEEEccCCcCCCCCCcccC
Q 003200 527 SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQG------EIPDCWMSYQNLKVLKLSNNKFSGNLPNSLG 600 (840)
Q Consensus 527 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~ 600 (840)
..++.++++++.++......++..+...+.++.++++++.+.+ .++..+..+++|++|++++|.+.+..+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 3466666666665543333344444455667777777766552 2233455566777777777777654444444
Q ss_pred CCCc---ccEEEccCCcCcC----CCCcccccC-CCCcEEeCCCCcccccCC----hhhhhccCCccEEEccCCccccc-
Q 003200 601 SITS---LVWLYLRKNRLSG----KIPISLKNC-TALASLDVDENEFVGNIP----TWFGERFSRMLVLILRSNQFHGP- 667 (840)
Q Consensus 601 ~l~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~ls~N~l~~~~p----~~~~~~l~~L~~L~l~~n~l~~~- 667 (840)
.+.. |+.|++++|++++ .+...+..+ ++|+.|++++|.+++... ..+. .+++|++|++++|.+++.
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR-ANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH-hCCCcCEEECcCCCCchHH
Confidence 4443 7777777777652 222334455 677777777777664322 2222 345677777777766632
Q ss_pred ---CCccccCccccceeecccccccccCCc----cccccccCcccccccCcccccccCCcceEEeCCCCcccccCccccc
Q 003200 668 ---LPKTICDLAFLQILDLADNNLSGAIPK----CISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVT 740 (840)
Q Consensus 668 ---~p~~l~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~ 740 (840)
++..+..+++|+.|++++|.+.+.... .+..+ ++|+.|++++|.+++..+..+.
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~-------------------~~L~~L~ls~n~l~~~~~~~l~ 242 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL-------------------KSLEVLNLGDNNLTDAGAAALA 242 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc-------------------CCCCEEecCCCcCchHHHHHHH
Confidence 223344455677777777766532221 22222 3346777777776643333222
Q ss_pred -----CCCCCCeEeCCCCccc----ccCCcchhccCCCCeEeCCCCccccc----CCccccCC-CCCCeEeccCCcc
Q 003200 741 -----NLKALQSINFSFNTFT----GRIPESIGTMRALESVDFSVNQLSGE----IPQSMSSL-TFLNHLNLSNNNL 803 (840)
Q Consensus 741 -----~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~ls~N~l 803 (840)
..+.|+.|++++|.++ ..++..+..+++|+++|+++|+++.. +...+... +.|+++++.+|++
T Consensus 243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 1356777777777765 22334455566777777777777643 33333334 5677777766653
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=2.1e-18 Score=184.08 Aligned_cols=215 Identities=25% Similarity=0.295 Sum_probs=138.0
Q ss_pred cCCCCcccEEeccCCcCccccCccccCCCC---cCEEEccCCcCCC----CCCcccCCC-CcccEEEccCCcCcCC----
Q 003200 551 VNETKSLEGLKLTDNYLQGEIPDCWMSYQN---LKVLKLSNNKFSG----NLPNSLGSI-TSLVWLYLRKNRLSGK---- 618 (840)
Q Consensus 551 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~Ls~n~l~~----~~~~~l~~l-~~L~~L~L~~n~l~~~---- 618 (840)
+..+++|+.|++++|.+.+..+..+..+.. |++|++++|++++ .+...+..+ ++|+.|++++|.+++.
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 334566777777777666444444444433 7777777777663 122234445 6777777777777632
Q ss_pred CCcccccCCCCcEEeCCCCcccccCChhhhh---ccCCccEEEccCCccccc----CCccccCccccceeeccccccccc
Q 003200 619 IPISLKNCTALASLDVDENEFVGNIPTWFGE---RFSRMLVLILRSNQFHGP----LPKTICDLAFLQILDLADNNLSGA 691 (840)
Q Consensus 619 ~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~---~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ 691 (840)
++..+..+++|++|++++|.+.+.....+.. ..++|+.|++++|.+++. ++..+..+++|+.|++++|++++.
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 3334566677888888888777432222221 345788888888877643 234556778899999999988753
Q ss_pred CCccccccccCcccccccCcccccccCCcceEEeCCCCccc----ccCcccccCCCCCCeEeCCCCccccc----CCcch
Q 003200 692 IPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFS----GEILSEVTNLKALQSINFSFNTFTGR----IPESI 763 (840)
Q Consensus 692 ~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~----~~~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l 763 (840)
....+... + ....+.|+.|++++|.++ ..+...+..+++|+.+++++|.++.. ....+
T Consensus 237 ~~~~l~~~--~------------~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~ 302 (319)
T cd00116 237 GAAALASA--L------------LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL 302 (319)
T ss_pred HHHHHHHH--H------------hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHH
Confidence 33222211 0 001245599999999987 23445667778999999999999955 44555
Q ss_pred hcc-CCCCeEeCCCCcc
Q 003200 764 GTM-RALESVDFSVNQL 779 (840)
Q Consensus 764 ~~l-~~L~~L~Ls~N~l 779 (840)
... +.|++||+.+|++
T Consensus 303 ~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 303 LEPGNELESLWVKDDSF 319 (319)
T ss_pred hhcCCchhhcccCCCCC
Confidence 555 7899999999874
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=4.8e-19 Score=155.02 Aligned_cols=182 Identities=25% Similarity=0.433 Sum_probs=107.5
Q ss_pred CCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccE
Q 003200 577 SYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLV 656 (840)
Q Consensus 577 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~ 656 (840)
+++..+.|.+|+|+++ .+|..++.+.+|+.|++.+|+++ .+|..++.+++|+.|+++-|++. .+|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lp------------ 95 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILP------------ 95 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCc------------
Confidence 4455566666666666 44445666666666666666665 55556666666666666555554 444
Q ss_pred EEccCCcccccCCccccCccccceeecccccccc-cCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccC
Q 003200 657 LILRSNQFHGPLPKTICDLAFLQILDLADNNLSG-AIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEI 735 (840)
Q Consensus 657 L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 735 (840)
..|+.++.|+.||+.+|++.. .+|..|..++.| +.|+|+.|.+. .+
T Consensus 96 -------------rgfgs~p~levldltynnl~e~~lpgnff~m~tl-------------------ralyl~dndfe-~l 142 (264)
T KOG0617|consen 96 -------------RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTL-------------------RALYLGDNDFE-IL 142 (264)
T ss_pred -------------cccCCCchhhhhhccccccccccCCcchhHHHHH-------------------HHHHhcCCCcc-cC
Confidence 444555555555555555442 334444444444 45555566555 56
Q ss_pred cccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCC---CCCeEeccCCcccccCC
Q 003200 736 LSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLT---FLNHLNLSNNNLTGKIP 808 (840)
Q Consensus 736 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~---~L~~L~ls~N~l~g~ip 808 (840)
|.+++++++||.|.+..|.+. ++|..++.++.|++|.+.+|+++ .+|..++.+. +=+.+.+.+|+...+|-
T Consensus 143 p~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIa 216 (264)
T KOG0617|consen 143 PPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIA 216 (264)
T ss_pred ChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence 666677777777777777766 66777777777777777777776 5666655543 22445566777665553
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=8.7e-19 Score=153.42 Aligned_cols=185 Identities=26% Similarity=0.437 Sum_probs=146.3
Q ss_pred CCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEE
Q 003200 553 ETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASL 632 (840)
Q Consensus 553 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 632 (840)
.+..++.|.+|+|+++ .+|..+..+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 4678889999999999 77788999999999999999999 67889999999999999999997 899999999999999
Q ss_pred eCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcc
Q 003200 633 DVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSV 712 (840)
Q Consensus 633 ~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~ 712 (840)
|+.+|.+... ..|..|..++.|+.|++++|.+. .+|..++++++|
T Consensus 108 dltynnl~e~------------------------~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l---------- 152 (264)
T KOG0617|consen 108 DLTYNNLNEN------------------------SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL---------- 152 (264)
T ss_pred hccccccccc------------------------cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce----------
Confidence 9999987621 34455556677777777777776 777777777766
Q ss_pred cccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccC---CCCeEeCCCCcccccCCcc
Q 003200 713 VYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMR---ALESVDFSVNQLSGEIPQS 786 (840)
Q Consensus 713 ~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~---~L~~L~Ls~N~l~~~~p~~ 786 (840)
+.|.+..|.+- +.|.+++.++.|++|++.+|+++ .+|..++++. +=+.+.+.+|.....|.+.
T Consensus 153 ---------qil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQ 218 (264)
T KOG0617|consen 153 ---------QILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAEQ 218 (264)
T ss_pred ---------eEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHHH
Confidence 67777777776 67888888888888888888888 6666666653 2234556677765555444
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.51 E-value=7.3e-14 Score=159.61 Aligned_cols=149 Identities=32% Similarity=0.491 Sum_probs=120.4
Q ss_pred CCcHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCc----cccceecCC--CCC--CEEEEEcCCCCCCCCCcccccccccc
Q 003200 30 GCLETERRALLRFKQDLQDPSNRLASWTGDGDCC----TWAGVACGN--VTG--HILELNLRNPSTSNPRSMLVGKVNPA 101 (840)
Q Consensus 30 ~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c----~w~gv~c~~--~~~--~v~~L~L~~~~~~~~~~~~~~~~~~~ 101 (840)
.+.++|..||+++|+++.++.. .+|. +..|| .|.||.|.. ..+ +|+.|+|+++ .+.|.+|+.
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n-------~L~g~ip~~ 437 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLR--FGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ-------GLRGFIPND 437 (623)
T ss_pred ccCchHHHHHHHHHHhcCCccc--CCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCC-------CccccCCHH
Confidence 4567899999999999876542 4896 43443 799999952 222 5899999997 888999999
Q ss_pred ccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCC-CC
Q 003200 102 LLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGL-SF 180 (840)
Q Consensus 102 ~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l-~~ 180 (840)
+.++++|++|+|++|.+.+. +|..++.+++|++|+|++|++++.+|..++++++|++|++++|.+....+..+... .+
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~ 516 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLH 516 (623)
T ss_pred HhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhcccc
Confidence 99999999999999999985 89999999999999999999999999999999999999999998876665555432 34
Q ss_pred CCEEEccCc
Q 003200 181 LEHLDLRSV 189 (840)
Q Consensus 181 L~~L~Ls~n 189 (840)
+..+++.+|
T Consensus 517 ~~~l~~~~N 525 (623)
T PLN03150 517 RASFNFTDN 525 (623)
T ss_pred CceEEecCC
Confidence 445555544
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.38 E-value=6e-13 Score=152.16 Aligned_cols=116 Identities=37% Similarity=0.656 Sum_probs=104.6
Q ss_pred ceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccC
Q 003200 721 VSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSN 800 (840)
Q Consensus 721 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 800 (840)
++.|+|++|.++|.+|..++.+++|+.|+|++|++.|.+|..++.+++|+.|||++|+++|.+|+.+.++++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCC--CcCCCcCcCCCCCC-CCCCCCCCCCCC
Q 003200 801 NNLTGKIPLS--TQLQSFNASSFAGN-DLCGAPLPKNCT 836 (840)
Q Consensus 801 N~l~g~ip~~--~~~~~~~~~~~~gn-~lcg~~~~~~c~ 836 (840)
|+++|.+|.. ..+.......+.|| ++||.|-...|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999975 22223345678999 999987656784
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.35 E-value=3.9e-14 Score=147.39 Aligned_cols=213 Identities=27% Similarity=0.422 Sum_probs=173.4
Q ss_pred EEeccCCcCccccCcc-c-cCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCC
Q 003200 559 GLKLTDNYLQGEIPDC-W-MSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDE 636 (840)
Q Consensus 559 ~L~Ls~n~l~~~~~~~-~-~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~ 636 (840)
.|.|++-++. ..|.. . ..+.--...|++.|++. ++|..++.+..|+.+.++.|.+. .+|.++.++..|.++|++.
T Consensus 54 ~l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 54 RLLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSS 130 (722)
T ss_pred ccccccchhh-cCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhcc
Confidence 3455555554 22221 1 23444567899999999 78888888999999999999998 8899999999999999999
Q ss_pred CcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccc
Q 003200 637 NEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYRE 716 (840)
Q Consensus 637 N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~ 716 (840)
|+++ .+|..++ .--|+.|.+++|+++ .+|..++....|..||.+.|.+. .+|..++++.++
T Consensus 131 NqlS-~lp~~lC--~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl-------------- 191 (722)
T KOG0532|consen 131 NQLS-HLPDGLC--DLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL-------------- 191 (722)
T ss_pred chhh-cCChhhh--cCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH--------------
Confidence 9998 8888887 345999999999998 67888888899999999999998 888888888887
Q ss_pred cCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCcccc---CCCCC
Q 003200 717 ILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMS---SLTFL 793 (840)
Q Consensus 717 ~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L 793 (840)
+.|.+..|++. ..|+++..| .|..||+|.|+++ .||-.|.+|+.|++|-|.+|.+. +.|..+. ...--
T Consensus 192 -----r~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIF 262 (722)
T KOG0532|consen 192 -----RDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIF 262 (722)
T ss_pred -----HHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeee
Confidence 78889999988 667777755 5888999999999 89999999999999999999998 6676654 33445
Q ss_pred CeEeccCCc
Q 003200 794 NHLNLSNNN 802 (840)
Q Consensus 794 ~~L~ls~N~ 802 (840)
++|+..-++
T Consensus 263 KyL~~qA~q 271 (722)
T KOG0532|consen 263 KYLSTQACQ 271 (722)
T ss_pred eeecchhcc
Confidence 777877775
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.31 E-value=7.5e-14 Score=145.33 Aligned_cols=195 Identities=23% Similarity=0.358 Sum_probs=170.1
Q ss_pred CCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEe
Q 003200 554 TKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLD 633 (840)
Q Consensus 554 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 633 (840)
+..-...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..++++..|++|+|+.|+++ .+|..++.|+ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344567889999998 78888888999999999999998 78889999999999999999998 8888898887 99999
Q ss_pred CCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccc
Q 003200 634 VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVV 713 (840)
Q Consensus 634 ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 713 (840)
+++|+++ .+|..++ ....|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|+.+..++ |
T Consensus 150 ~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-L----------- 213 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-L----------- 213 (722)
T ss_pred EecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-e-----------
Confidence 9999998 8999998 8899999999999998 67888999999999999999998 7777776543 3
Q ss_pred ccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchh---ccCCCCeEeCCCCc
Q 003200 714 YREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIG---TMRALESVDFSVNQ 778 (840)
Q Consensus 714 ~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~ 778 (840)
..||+|+|+++ .||-.|.+|+.|++|-|.+|.++ ..|..+. ...--++|+..-++
T Consensus 214 --------i~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 214 --------IRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred --------eeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 78999999999 89999999999999999999999 7777663 34456778887775
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.27 E-value=4.6e-12 Score=138.99 Aligned_cols=200 Identities=30% Similarity=0.485 Sum_probs=133.5
Q ss_pred cEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCC-cccEEEccCCcCcCCCCcccccCCCCcEEeCCC
Q 003200 558 EGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSIT-SLVWLYLRKNRLSGKIPISLKNCTALASLDVDE 636 (840)
Q Consensus 558 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~ 636 (840)
..++++.+.+...+ ..+..++.++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..+++|+.|++++
T Consensus 96 ~~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 96 PSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred ceeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 35777777764332 23445577888888888888 4444455553 7888888888887 5566777888888888888
Q ss_pred CcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccc
Q 003200 637 NEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYRE 716 (840)
Q Consensus 637 N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~ 716 (840)
|+++ .+|.... ..+.|+.|++++|++. .+|..+.....|++|++++|++. ..+..+.+++.+
T Consensus 173 N~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l-------------- 234 (394)
T COG4886 173 NDLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL-------------- 234 (394)
T ss_pred chhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc--------------
Confidence 8887 5565543 4677777778877777 44444444556777777777544 445555555555
Q ss_pred cCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCcc
Q 003200 717 ILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQS 786 (840)
Q Consensus 717 ~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 786 (840)
..+.+++|++. .++..++.++.++.|++++|.++ .++. ++.+.+++.||+++|.++..+|..
T Consensus 235 -----~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 235 -----SGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred -----cccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence 55667777765 33556667777777777777777 4444 677777777777777777554443
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.25 E-value=8.5e-12 Score=136.88 Aligned_cols=200 Identities=32% Similarity=0.457 Sum_probs=134.6
Q ss_pred EEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCC-CcCEEEccCCcCCCCCCcccCCCCcccEEE
Q 003200 531 YLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQ-NLKVLKLSNNKFSGNLPNSLGSITSLVWLY 609 (840)
Q Consensus 531 ~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 609 (840)
.++...+.+...+... ...+.++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..++.|+.|+
T Consensus 97 ~l~~~~~~~~~~~~~~-----~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~ 169 (394)
T COG4886 97 SLDLNLNRLRSNISEL-----LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLD 169 (394)
T ss_pred eeeccccccccCchhh-----hcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccc
Confidence 4666666653333222 22366788888888877 4445555553 7888888888877 4445577778888888
Q ss_pred ccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeeccccccc
Q 003200 610 LRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLS 689 (840)
Q Consensus 610 L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 689 (840)
+++|+++ .+|......+.|+.|++++|++. .+|.... ....|+++.+++|.+. ..+..+..+..+..+.+++|++.
T Consensus 170 l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~-~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~ 245 (394)
T COG4886 170 LSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE-LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE 245 (394)
T ss_pred cCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhh-hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee
Confidence 8888887 55655556778888888888887 6666543 3455888888888533 34556677777777777777776
Q ss_pred ccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcch
Q 003200 690 GAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESI 763 (840)
Q Consensus 690 ~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l 763 (840)
..+..++.+.++ +.|++++|.++. ++. ++.+..++.|++++|.+....|...
T Consensus 246 -~~~~~~~~l~~l-------------------~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 246 -DLPESIGNLSNL-------------------ETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred -eccchhcccccc-------------------ceeccccccccc-ccc-ccccCccCEEeccCccccccchhhh
Confidence 335555555544 778888888873 333 7777888888888888876555443
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.17 E-value=1.1e-12 Score=129.34 Aligned_cols=170 Identities=28% Similarity=0.321 Sum_probs=75.0
Q ss_pred ccccCCCCCCEEeCCCCCCCCC---CccccccCCCCCcEEeccCCc---ccCCCCC-------CCCCCCCCCeEeccCcc
Q 003200 100 PALLDLKHLSYLDLSSNDFQGV---QIPRFIGSMRNLRYLNLSDTQ---FVGMIPP-------QLGNLSDLQFLDLSSNY 166 (840)
Q Consensus 100 ~~~~~l~~L~~L~Ls~n~~~~~---~~p~~l~~l~~L~~L~Ls~n~---i~~~~p~-------~l~~l~~L~~L~Ls~n~ 166 (840)
+.+.....+++++||+|.|... .+...+.+.++|+..++|+-- ....+|. ++..+++|++||||+|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 4445555666666666655321 122334445566666655421 1112222 33444566666666665
Q ss_pred ccCCCccc----ccCCCCCCEEEccCcCCCCCcc-----------hhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcc
Q 003200 167 LYVDNVWW----LSGLSFLEHLDLRSVNLSKASD-----------WLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGL 231 (840)
Q Consensus 167 ~~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l 231 (840)
+....++. +.++..|++|.|.+|.+..... .....+.-++|+++...+|.+...+.. .+...|
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~--~~A~~~ 181 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT--ALAEAF 181 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHH--HHHHHH
Confidence 55444432 2344555555555554432211 111223344555555555554443321 111334
Q ss_pred cCCCCCCEEECcCCCCCCC----CcccccCCCCCcEEEcccCcc
Q 003200 232 QNLTSLKHLDLDSNHFNSS----IPDWLYKFSPLECLNLRNNSL 271 (840)
Q Consensus 232 ~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l 271 (840)
..++.|+.+.++.|.|... +...+..+++|++||+.+|.+
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf 225 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF 225 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh
Confidence 4445555555555544311 112233444444444444444
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=6.4e-12 Score=127.31 Aligned_cols=224 Identities=21% Similarity=0.188 Sum_probs=129.9
Q ss_pred CCcCcccCCchhhhccCCCCcccEEeccCCcCccccC-ccccCCCCcCEEEccCCcCCCCC--CcccCCCCcccEEEccC
Q 003200 536 NNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIP-DCWMSYQNLKVLKLSNNKFSGNL--PNSLGSITSLVWLYLRK 612 (840)
Q Consensus 536 ~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--~~~l~~l~~L~~L~L~~ 612 (840)
+-.+.+..-..+...-.++.+|+++.|.++.+..... +....|++++.|||+.|-+.... -.....+++|+.|+++.
T Consensus 102 nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~ 181 (505)
T KOG3207|consen 102 NKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS 181 (505)
T ss_pred CceeEEecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc
Confidence 3333333333344444556677777777776652211 34566778888888887766421 12235677788888888
Q ss_pred CcCcCCCCcc-cccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeeccccccccc
Q 003200 613 NRLSGKIPIS-LKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGA 691 (840)
Q Consensus 613 n~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 691 (840)
|++....... -..++.|+.|.++.|.++-.--.++...+|+|+.|++..|.....-.....-+..|++|||++|++. .
T Consensus 182 Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~ 260 (505)
T KOG3207|consen 182 NRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-D 260 (505)
T ss_pred ccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-c
Confidence 8775322211 1245677788888887775555566667788888888777533333333344667778888887776 2
Q ss_pred CC--ccccccccCcccccccCcccccccCCcceEEeCCCCcccccC-ccc-----ccCCCCCCeEeCCCCcccccCC--c
Q 003200 692 IP--KCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEI-LSE-----VTNLKALQSINFSFNTFTGRIP--E 761 (840)
Q Consensus 692 ~p--~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~-~~~-----l~~l~~L~~L~Ls~N~l~~~~p--~ 761 (840)
.+ ...+.++ .|..|+++.+.+++.- |+. ...+++|+.|+++.|++. .++ .
T Consensus 261 ~~~~~~~~~l~-------------------~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~ 320 (505)
T KOG3207|consen 261 FDQGYKVGTLP-------------------GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLN 320 (505)
T ss_pred ccccccccccc-------------------chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccc
Confidence 22 2233333 3366677777665322 221 245667777777777764 232 2
Q ss_pred chhccCCCCeEeCCCCccc
Q 003200 762 SIGTMRALESVDFSVNQLS 780 (840)
Q Consensus 762 ~l~~l~~L~~L~Ls~N~l~ 780 (840)
.+..+.+|+.|.+-.|.++
T Consensus 321 ~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 321 HLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhccchhhhhhccccccc
Confidence 3444556666666666665
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.13 E-value=2.3e-11 Score=116.85 Aligned_cols=131 Identities=23% Similarity=0.348 Sum_probs=84.3
Q ss_pred CCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcc
Q 003200 652 SRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNF 731 (840)
Q Consensus 652 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l 731 (840)
..|+++++++|.|+ .+.+++.-.+.++.|++|+|.+. .++++..| ++|+.||||+|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-----~v~nLa~L----------------~~L~~LDLS~N~L 341 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-----TVQNLAEL----------------PQLQLLDLSGNLL 341 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-----eehhhhhc----------------ccceEeecccchh
Confidence 34667777777766 34455566677777777777776 22222222 4447777777777
Q ss_pred cccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccC-CccccCCCCCCeEeccCCcccccC
Q 003200 732 SGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEI-PQSMSSLTFLNHLNLSNNNLTGKI 807 (840)
Q Consensus 732 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~g~i 807 (840)
+ .+...-..+-+.+.|+|+.|.+.. + ..++.+-+|..||+++|++...- -..+++++.|+.+.+.+|++.+.+
T Consensus 342 s-~~~Gwh~KLGNIKtL~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 342 A-ECVGWHLKLGNIKTLKLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred H-hhhhhHhhhcCEeeeehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 6 333333456667777888887762 2 34677778888888888876432 235777888888888888887643
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=2e-11 Score=113.54 Aligned_cols=112 Identities=26% Similarity=0.319 Sum_probs=34.0
Q ss_pred ccCCCCCCEEeCCCCCCCCCCcccccc-CCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCC
Q 003200 102 LLDLKHLSYLDLSSNDFQGVQIPRFIG-SMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSF 180 (840)
Q Consensus 102 ~~~l~~L~~L~Ls~n~~~~~~~p~~l~-~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~ 180 (840)
+.+...+++|+|++|.|+.+ +.++ .+.+|+.|++++|.|+.. +.+..+++|++|++++|.++.........+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPN 89 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT
T ss_pred cccccccccccccccccccc---cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCc
Confidence 33445678888888887743 2344 467788888888887743 24677777888888888777654332345677
Q ss_pred CCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCc
Q 003200 181 LEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHH 219 (840)
Q Consensus 181 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 219 (840)
|++|++++|++..+.+ ...+..+++|+.|++.+|.+..
T Consensus 90 L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 90 LQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp --EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGGG
T ss_pred CCEEECcCCcCCChHH-hHHHHcCCCcceeeccCCcccc
Confidence 7777777777766544 2334455555555555555543
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=2.1e-11 Score=117.23 Aligned_cols=137 Identities=25% Similarity=0.314 Sum_probs=106.4
Q ss_pred ccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCcccccccc
Q 003200 622 SLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTG 701 (840)
Q Consensus 622 ~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 701 (840)
.....+.|+++|+|+|.|+ .+.+.+- -.|.++.|++++|.+.... .++.+++|+.||||+|.++ .+..+-..
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~K--- 350 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLK--- 350 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhh-hccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhh---
Confidence 3344467888999999887 6666655 5789999999999987543 3788999999999999987 33333223
Q ss_pred CcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccC-CcchhccCCCCeEeCCCCccc
Q 003200 702 MVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRI-PESIGTMRALESVDFSVNQLS 780 (840)
Q Consensus 702 L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~ 780 (840)
+.+++.|.|++|.+.. ...++.+-+|..||+++|++...- -..+|+++.|+.+.|.+|++.
T Consensus 351 ----------------LGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 351 ----------------LGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ----------------hcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 3445899999999863 457888999999999999998432 357899999999999999998
Q ss_pred ccCCc
Q 003200 781 GEIPQ 785 (840)
Q Consensus 781 ~~~p~ 785 (840)
+ +|+
T Consensus 413 ~-~vd 416 (490)
T KOG1259|consen 413 G-SVD 416 (490)
T ss_pred c-cch
Confidence 4 443
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.08 E-value=1.9e-11 Score=120.71 Aligned_cols=235 Identities=22% Similarity=0.262 Sum_probs=139.1
Q ss_pred CCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCC---cCccccCc-------cccCCCCcCEEEccCCcCCCCC
Q 003200 526 SSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDN---YLQGEIPD-------CWMSYQNLKVLKLSNNKFSGNL 595 (840)
Q Consensus 526 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n---~l~~~~~~-------~~~~l~~L~~L~Ls~n~l~~~~ 595 (840)
...++.+++++|.|...-...++..+...+.|+..++++- +....+|+ ++..++.|++||||+|.+.-..
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 3567888888888887777778888888888888888763 22223443 3456778999999999887655
Q ss_pred Cccc----CCCCcccEEEccCCcCcCCCCcc-------------cccCCCCcEEeCCCCcccccCCh---hhhhccCCcc
Q 003200 596 PNSL----GSITSLVWLYLRKNRLSGKIPIS-------------LKNCTALASLDVDENEFVGNIPT---WFGERFSRML 655 (840)
Q Consensus 596 ~~~l----~~l~~L~~L~L~~n~l~~~~p~~-------------l~~l~~L~~L~ls~N~l~~~~p~---~~~~~l~~L~ 655 (840)
++.| ..+..|+.|+|.+|.+.-.--.. ...-+.|+++..++|++...--. ..++..+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 5443 55788999999998775111111 12335677777777776532211 1222446677
Q ss_pred EEEccCCccccc----CCccccCccccceeecccccccccCC----ccccccccCcccccccCcccccccCCcceEEeCC
Q 003200 656 VLILRSNQFHGP----LPKTICDLAFLQILDLADNNLSGAIP----KCISNLTGMVTVKSFTGSVVYREILPLVSLLDIS 727 (840)
Q Consensus 656 ~L~l~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls 727 (840)
.+.+..|.|... +..++..++.|+.|||.+|.++..-. ..++.+ |+|+.|+++
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~-------------------~~L~El~l~ 249 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW-------------------PHLRELNLG 249 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc-------------------chheeeccc
Confidence 777777766421 22345666777777777776652221 122222 333666666
Q ss_pred CCcccccCcccc-----cCCCCCCeEeCCCCccccc----CCcchhccCCCCeEeCCCCcc
Q 003200 728 RNNFSGEILSEV-----TNLKALQSINFSFNTFTGR----IPESIGTMRALESVDFSVNQL 779 (840)
Q Consensus 728 ~N~l~~~~~~~l-----~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l 779 (840)
+|.+...-...+ ...++|++|.+.+|.++.. +...+...+.|+.|+|++|++
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 666653332222 2245666666666665532 223334455566666666665
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3e-11 Score=122.47 Aligned_cols=219 Identities=25% Similarity=0.225 Sum_probs=133.6
Q ss_pred CCCCCCCeEeccCccccCCCc-ccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCc
Q 003200 152 GNLSDLQFLDLSSNYLYVDNV-WWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRG 230 (840)
Q Consensus 152 ~~l~~L~~L~Ls~n~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~ 230 (840)
.++++|+...|.++.+..... .....+++++.|||+.|-+..+.........+|+|+.|+++.|.+...... ..
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s-----~~ 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS-----NT 192 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-----cc
Confidence 345566666666655544333 345567777777777777777766666777788888888888877665432 12
Q ss_pred ccCCCCCCEEECcCCCCCCC-CcccccCCCCCcEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCC
Q 003200 231 LQNLTSLKHLDLDSNHFNSS-IPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCN 309 (840)
Q Consensus 231 l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~ 309 (840)
-..+++|+.|.|+.|.++.. +...+..+++|+.|++..|............+..|++|+|++|+.+.-..-...+.++.
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence 23567788888888877743 22234567788888888875333334445567777888888765554444455666677
Q ss_pred CcEEEcCCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccc-cccccCCCCCC
Q 003200 310 LKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLI-PESFGQLSTLR 388 (840)
Q Consensus 310 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~ 388 (840)
|+.|+++.+.+... ....+. ..+....+++|+.|++..|++.... -..+..+++|+
T Consensus 273 L~~Lnls~tgi~si-------------------~~~d~~----s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk 329 (505)
T KOG3207|consen 273 LNQLNLSSTGIASI-------------------AEPDVE----SLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLK 329 (505)
T ss_pred hhhhhccccCcchh-------------------cCCCcc----chhhhcccccceeeecccCccccccccchhhccchhh
Confidence 77776666654321 100000 0011235678888888888875331 12344467777
Q ss_pred EEEccCCccc
Q 003200 389 ELQIYDNKLN 398 (840)
Q Consensus 389 ~L~L~~n~l~ 398 (840)
.|.+..|.+.
T Consensus 330 ~l~~~~n~ln 339 (505)
T KOG3207|consen 330 HLRITLNYLN 339 (505)
T ss_pred hhhccccccc
Confidence 7777777775
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=4e-10 Score=104.93 Aligned_cols=125 Identities=27% Similarity=0.263 Sum_probs=38.9
Q ss_pred CCcccEEeccCCcCccccCcccc-CCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCccc-ccCCCCcE
Q 003200 554 TKSLEGLKLTDNYLQGEIPDCWM-SYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISL-KNCTALAS 631 (840)
Q Consensus 554 ~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~ 631 (840)
...+++|+|.+|.|+.+ +.+. .+.+|+.|++++|.++.. +.+..++.|+.|++++|+|+. ++..+ ..+++|++
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCE
Confidence 34567777777777632 2344 456777777777777743 246666777777777777763 33333 35677777
Q ss_pred EeCCCCcccccCChhhhhccCCccEEEccCCcccccCC---ccccCccccceeec
Q 003200 632 LDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLP---KTICDLAFLQILDL 683 (840)
Q Consensus 632 L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~L 683 (840)
|++++|++...-.-.....+++|++|++.+|.++...- -.+..+|+|+.||-
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 77777777543221222256666677777666653311 13445666666664
No 37
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.88 E-value=2.1e-09 Score=74.68 Aligned_cols=39 Identities=49% Similarity=1.049 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhhcCC-CCCCCCCCCCCC--CCCccccceecC
Q 003200 33 ETERRALLRFKQDLQ-DPSNRLASWTGD--GDCCTWAGVACG 71 (840)
Q Consensus 33 ~~~~~~ll~~k~~~~-~~~~~l~~W~~~--~~~c~w~gv~c~ 71 (840)
++|++||++||+++. +|.+.+.+|+.. .+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 689999999999999 577899999965 799999999995
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.88 E-value=1.3e-09 Score=127.25 Aligned_cols=162 Identities=28% Similarity=0.328 Sum_probs=108.4
Q ss_pred cccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCC
Q 003200 101 ALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSF 180 (840)
Q Consensus 101 ~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~ 180 (840)
.|..++.|++|||++|.- +.++|..++.+-+||||+++++.+. .+|..+++|++|.+|++..+......+.....+.+
T Consensus 566 ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~ 643 (889)
T KOG4658|consen 566 FFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQS 643 (889)
T ss_pred HHhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccc
Confidence 366799999999998743 3369999999999999999999988 88999999999999999988655555667777999
Q ss_pred CCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCC----EEECcCCCCCCCCccccc
Q 003200 181 LEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLK----HLDLDSNHFNSSIPDWLY 256 (840)
Q Consensus 181 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~----~L~Ls~n~l~~~~p~~l~ 256 (840)
||+|.+..............+.++.+|+.+.......... ..+..+..|. .+.+.++... ..+..+.
T Consensus 644 Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~--------e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~ 714 (889)
T KOG4658|consen 644 LRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLL--------EDLLGMTRLRSLLQSLSIEGCSKR-TLISSLG 714 (889)
T ss_pred ccEEEeeccccccchhhHHhhhcccchhhheeecchhHhH--------hhhhhhHHHHHHhHhhhhcccccc-eeecccc
Confidence 9999987766444444444555666666666544433100 1122222222 2222222221 3344566
Q ss_pred CCCCCcEEEcccCcccc
Q 003200 257 KFSPLECLNLRNNSLQG 273 (840)
Q Consensus 257 ~l~~L~~L~L~~n~l~~ 273 (840)
.+.+|+.|.+.++.+..
T Consensus 715 ~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 715 SLGNLEELSILDCGISE 731 (889)
T ss_pred cccCcceEEEEcCCCch
Confidence 67777777777776653
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.81 E-value=3.4e-09 Score=80.95 Aligned_cols=60 Identities=40% Similarity=0.557 Sum_probs=33.4
Q ss_pred CCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcc
Q 003200 744 ALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNL 803 (840)
Q Consensus 744 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 803 (840)
+|++|++++|+++...+..|..+++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555555544445555555555555555555544445555555555555555543
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.80 E-value=3.4e-09 Score=80.98 Aligned_cols=61 Identities=28% Similarity=0.434 Sum_probs=56.8
Q ss_pred CcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcc
Q 003200 719 PLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQL 779 (840)
Q Consensus 719 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 779 (840)
|+|++|++++|+++...+..|.++++|++|++++|+++...|..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5679999999999977778899999999999999999988889999999999999999986
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=1e-09 Score=120.44 Aligned_cols=228 Identities=26% Similarity=0.210 Sum_probs=139.2
Q ss_pred cCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCc
Q 003200 551 VNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALA 630 (840)
Q Consensus 551 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 630 (840)
+..+++++.|++.+|.+.... ..+..+++|++|++++|.|+... .+..++.|+.|++.+|.|+.. ..+..++.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhcc-cchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhh
Confidence 334567777777777776432 22566777777777777777553 355666677777777777622 3444467777
Q ss_pred EEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccC
Q 003200 631 SLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTG 710 (840)
Q Consensus 631 ~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~ 710 (840)
.+++++|.+...-+.. ...+.+++.+.+.+|.+... ..+..+..+..+++..|.++..-+ +..+..
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~--------- 231 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVM--------- 231 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchh---------
Confidence 7777777776443311 12567777777777777543 223334445555667776652111 000000
Q ss_pred cccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCccccc---CCcc-
Q 003200 711 SVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGE---IPQS- 786 (840)
Q Consensus 711 ~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~---~p~~- 786 (840)
.+|+.+++++|++. .++..+..+..+..|++++|++...- .+...+.+..+....|.+... ....
T Consensus 232 --------~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (414)
T KOG0531|consen 232 --------LHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYI 300 (414)
T ss_pred --------HHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhcccc
Confidence 02467788888876 33456677777888888888877322 245566777777777776522 1121
Q ss_pred ccCCCCCCeEeccCCcccccCC
Q 003200 787 MSSLTFLNHLNLSNNNLTGKIP 808 (840)
Q Consensus 787 l~~l~~L~~L~ls~N~l~g~ip 808 (840)
......+....+.+|+.....+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 301 TSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccccccccccccccCccccccc
Confidence 4556777888888887766554
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.76 E-value=8e-10 Score=121.21 Aligned_cols=241 Identities=25% Similarity=0.303 Sum_probs=165.0
Q ss_pred CCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcc
Q 003200 526 SSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSL 605 (840)
Q Consensus 526 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 605 (840)
.+..+.++...+.+.+.... . ..+..++.+.+..|.+.. +-..+..+.+|+.|++.+|+|... ...+..+++|
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~-~----~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L 120 (414)
T KOG0531|consen 48 PSDLEEIDLIFNLDGSDEDL-V----ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNL 120 (414)
T ss_pred cchhhhhcchhccccchhhh-H----HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcc
Confidence 34555556555543321111 0 235677788888888874 334467788899999999998854 3336778899
Q ss_pred cEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCC-ccccCccccceeecc
Q 003200 606 VWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLP-KTICDLAFLQILDLA 684 (840)
Q Consensus 606 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~Ls 684 (840)
++|++++|+|+... .+..++.|+.|++++|.++ .+.. +. .+..|+.+++++|++....+ . ...+.+++.+++.
T Consensus 121 ~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~~~-~~-~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 121 QVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DISG-LE-SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLG 194 (414)
T ss_pred hheecccccccccc--chhhccchhhheeccCcch-hccC-Cc-cchhhhcccCCcchhhhhhhhh-hhhccchHHHhcc
Confidence 99999999987443 4566677899999999887 3332 22 37888888999998886655 2 4667888888888
Q ss_pred cccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCC--CCeEeCCCCcccccCCcc
Q 003200 685 DNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKA--LQSINFSFNTFTGRIPES 762 (840)
Q Consensus 685 ~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~--L~~L~Ls~N~l~~~~p~~ 762 (840)
+|.+.. ...+..+..+ ..+++..|.++..- .+..+.. |+.+++++|++. .++..
T Consensus 195 ~n~i~~--i~~~~~~~~l-------------------~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~-~~~~~ 250 (414)
T KOG0531|consen 195 GNSIRE--IEGLDLLKKL-------------------VLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRIS-RSPEG 250 (414)
T ss_pred CCchhc--ccchHHHHHH-------------------HHhhcccccceecc--CcccchhHHHHHHhcccCccc-ccccc
Confidence 888761 1122222222 45688888887322 2333333 899999999999 55567
Q ss_pred hhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccc
Q 003200 763 IGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTG 805 (840)
Q Consensus 763 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 805 (840)
+..++.+..||+++|++... +.+.....+..+....|++..
T Consensus 251 ~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~ 291 (414)
T KOG0531|consen 251 LENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLAL 291 (414)
T ss_pred ccccccccccchhhcccccc--ccccccchHHHhccCcchhcc
Confidence 78889999999999999743 345566777888888887763
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.73 E-value=4.6e-09 Score=122.77 Aligned_cols=278 Identities=20% Similarity=0.173 Sum_probs=119.2
Q ss_pred CCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCc--ccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCE
Q 003200 106 KHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQ--FVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEH 183 (840)
Q Consensus 106 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~--i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~ 183 (840)
...|...+-+|.+. .++.... .++|++|-+..|. +....+..|..++.|++||+++|.-....|..++.+-+||+
T Consensus 523 ~~~rr~s~~~~~~~--~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE--HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchh--hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 34444555444443 1222221 2345555555553 33222233445555555555554433344444555555555
Q ss_pred EEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCC--CCCcccccCCCCC
Q 003200 184 LDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFN--SSIPDWLYKFSPL 261 (840)
Q Consensus 184 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L 261 (840)
|++++..+.. +|..+.++.+|.+|++..+.....++ .....+++|++|.+...... ...-..+.++.+|
T Consensus 600 L~L~~t~I~~---LP~~l~~Lk~L~~Lnl~~~~~l~~~~------~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L 670 (889)
T KOG4658|consen 600 LDLSDTGISH---LPSGLGNLKKLIYLNLEVTGRLESIP------GILLELQSLRVLRLPRSALSNDKLLLKELENLEHL 670 (889)
T ss_pred ccccCCCccc---cchHHHHHHhhheecccccccccccc------chhhhcccccEEEeeccccccchhhHHhhhcccch
Confidence 5555555443 23344455555555555554332221 34444666666666544311 1122223344444
Q ss_pred cEEEcccCccccccchhhhcCCCCcEEecccc--cCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCC-CCC
Q 003200 262 ECLNLRNNSLQGTISDAIGNLTSVSWLDLSIN--IGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCV-SNG 338 (840)
Q Consensus 262 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~ 338 (840)
+.+....... .+-..+..++.|..+...-. .......+..+..+.+|+.|.+.++................. +++
T Consensus 671 ~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~ 748 (889)
T KOG4658|consen 671 ENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPN 748 (889)
T ss_pred hhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHH
Confidence 4444432221 11112222333321111110 011223455566777777777777776543222111100000 002
Q ss_pred CCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccc
Q 003200 339 LESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLN 398 (840)
Q Consensus 339 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 398 (840)
+..+...++... ..+.+....++|+.|.+..+.....+.+....+..++.+.+..+.+.
T Consensus 749 l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 749 LSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred HHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 222222222111 12223334577777777777655554444555555555555554444
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.2e-09 Score=103.57 Aligned_cols=180 Identities=22% Similarity=0.288 Sum_probs=118.6
Q ss_pred CCCEEECcCCCCCCC-CcccccCCCCCcEEEcccCccccccchhhhcCCCCcEEecccccCccccC-cccccCCCCCcEE
Q 003200 236 SLKHLDLDSNHFNSS-IPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRI-PRSMANFCNLKSV 313 (840)
Q Consensus 236 ~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~l~~l~~L~~L 313 (840)
.|++||||...++.. .-..++.|.+|+.|.+.++++.+.+...+..-.+|+.|+++.++.++..- .--+..++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 588888888776632 22345678888888888888888888888888889999988876655432 2236778889999
Q ss_pred EcCCCcccccchHHHHhhccCCCCCCCEEEccCCccc---ccCccccCCCCCCCEEEccCCc-ccccccccccCCCCCCE
Q 003200 314 NLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIY---GHLTDQLGQFRNLVTLNLANNS-IVGLIPESFGQLSTLRE 389 (840)
Q Consensus 314 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~ 389 (840)
++++|.+..+.....- .....+|+.|+++++.-. ..+..-...+++|.+|||++|. ++......|.+++.|++
T Consensus 266 NlsWc~l~~~~Vtv~V---~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAV---AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred CchHhhccchhhhHHH---hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 9998887665433221 122237888888876421 1122223467888888888873 44333445667888888
Q ss_pred EEccCCccccccCh--hhhccCCCCCEEEccCc
Q 003200 390 LQIYDNKLNGTLSE--FHFANLTKLSWFRVGGN 420 (840)
Q Consensus 390 L~L~~n~l~~~i~~--~~~~~l~~L~~L~L~~n 420 (840)
|.++.|.. .+|+ ..+...+.|.+|++.++
T Consensus 343 lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 343 LSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 88888873 3333 13455566666665544
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=3.6e-09 Score=102.15 Aligned_cols=182 Identities=19% Similarity=0.149 Sum_probs=88.5
Q ss_pred CcEEeccCCcccCC-CCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEE
Q 003200 133 LRYLNLSDTQFVGM-IPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELR 211 (840)
Q Consensus 133 L~~L~Ls~n~i~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~ 211 (840)
|++||||+..|+.. +-.-+..+.+|+.|.+.++++.+.....+++-.+|+.|+++.+.--........+.+|+.|.+|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 44555554444321 11122344455555555554444444444555555555555443322222333455667777777
Q ss_pred cCCCCCCcCCCCCCCCCCcccC-CCCCCEEECcCCCC--C-CCCcccccCCCCCcEEEcccCc-cccccchhhhcCCCCc
Q 003200 212 LSNCSLHHFPTLASPIPRGLQN-LTSLKHLDLDSNHF--N-SSIPDWLYKFSPLECLNLRNNS-LQGTISDAIGNLTSVS 286 (840)
Q Consensus 212 L~~n~l~~~~~~~~~l~~~l~~-l~~L~~L~Ls~n~l--~-~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~ 286 (840)
++||.+....- . ..+.. -.+|+.|+++++.- . ..+..-...+++|..|||++|. ++......|.+++.|+
T Consensus 267 lsWc~l~~~~V--t---v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 267 LSWCFLFTEKV--T---VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred chHhhccchhh--h---HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 77776554221 0 01111 13566666666531 1 1111222456677777776653 3434445566677777
Q ss_pred EEecccccCccccCcccccCCCCCcEEEcCCCc
Q 003200 287 WLDLSINIGLQGRIPRSMANFCNLKSVNLRGVH 319 (840)
Q Consensus 287 ~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~ 319 (840)
+|.++.|-.+....--.+...+.|.+|++.++-
T Consensus 342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 777766532222222234556667777776654
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.46 E-value=5.6e-09 Score=112.45 Aligned_cols=196 Identities=27% Similarity=0.303 Sum_probs=115.6
Q ss_pred CCCcCEEEccCCcCCCCC-CcccCCCCcccEEEccCCcCcCCCCcccccC-CCCcEEeCCCCccc----------ccCCh
Q 003200 578 YQNLKVLKLSNNKFSGNL-PNSLGSITSLVWLYLRKNRLSGKIPISLKNC-TALASLDVDENEFV----------GNIPT 645 (840)
Q Consensus 578 l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~ls~N~l~----------~~~p~ 645 (840)
+++++.|.+-.-.-.+.. |-.+..+.+|++|.+.+|.+.. -..+..+ ..|+.|-.. |.+. |.+..
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhcccccc
Confidence 344444544333222222 4456667899999999998863 1111111 223333221 1111 11111
Q ss_pred hhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEe
Q 003200 646 WFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLD 725 (840)
Q Consensus 646 ~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~ 725 (840)
.+ ....|...+.++|++. ....++.-++.++.|+|++|++... . .+.. ++.|+.||
T Consensus 160 s~--~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v-~-~Lr~-------------------l~~LkhLD 215 (1096)
T KOG1859|consen 160 SP--VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV-D-NLRR-------------------LPKLKHLD 215 (1096)
T ss_pred ch--hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh-H-HHHh-------------------cccccccc
Confidence 11 1235667777788776 4456677778888888888888721 1 2222 34458888
Q ss_pred CCCCcccccCcc-cccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCC-ccccCCCCCCeEeccCCcc
Q 003200 726 ISRNNFSGEILS-EVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIP-QSMSSLTFLNHLNLSNNNL 803 (840)
Q Consensus 726 Ls~N~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ls~N~l 803 (840)
|++|.+. .+|. ....+. |+.|++++|.++. +- .+.+|.+|+.||+++|-+.+--. .-+..|..|+.|+|.+|++
T Consensus 216 lsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t-L~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 216 LSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT-LR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccchhc-cccccchhhhh-heeeeecccHHHh-hh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 8888887 3332 233444 8888888888873 32 46788888888888888765311 2245567788888888887
Q ss_pred c
Q 003200 804 T 804 (840)
Q Consensus 804 ~ 804 (840)
.
T Consensus 292 ~ 292 (1096)
T KOG1859|consen 292 C 292 (1096)
T ss_pred c
Confidence 4
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=1.3e-07 Score=91.58 Aligned_cols=110 Identities=24% Similarity=0.256 Sum_probs=67.7
Q ss_pred CCCCCeEeccCccccCCCcc-cc-cCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcc
Q 003200 154 LSDLQFLDLSSNYLYVDNVW-WL-SGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGL 231 (840)
Q Consensus 154 l~~L~~L~Ls~n~~~~~~~~-~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l 231 (840)
...++.|-+.++.|...... .| ...+.++.+||.+|.+++++++...+.++|.|+.|+++.|++...+. .+|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~---~lp--- 117 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK---SLP--- 117 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc---cCc---
Confidence 33455555666655443322 22 34678888999999999988888888888999999999888876542 111
Q ss_pred cCCCCCCEEECcCCCCCCC-CcccccCCCCCcEEEcccC
Q 003200 232 QNLTSLKHLDLDSNHFNSS-IPDWLYKFSPLECLNLRNN 269 (840)
Q Consensus 232 ~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n 269 (840)
....+|++|-|.+..+.-. ....+..++.++.|.++.|
T Consensus 118 ~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 118 LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 3456677777766555422 1222334444444444444
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.36 E-value=5.2e-09 Score=112.67 Aligned_cols=160 Identities=29% Similarity=0.376 Sum_probs=86.9
Q ss_pred cccccCCCCCCEEeCCCCCCCCCC--------ccccc----------------cCC------CCCcEEeccCCcccCCCC
Q 003200 99 NPALLDLKHLSYLDLSSNDFQGVQ--------IPRFI----------------GSM------RNLRYLNLSDTQFVGMIP 148 (840)
Q Consensus 99 ~~~~~~l~~L~~L~Ls~n~~~~~~--------~p~~l----------------~~l------~~L~~L~Ls~n~i~~~~p 148 (840)
|-.|..++.||+|.|.++.+.... +-..| +.. ..|.+.+.++|.+. .+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHH
Confidence 556778888888888888765210 00000 000 13444455555554 344
Q ss_pred CCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCC
Q 003200 149 PQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIP 228 (840)
Q Consensus 149 ~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~ 228 (840)
.++.-++.|+.|||++|++.... .+..+++|++|||+.|.+..++.+... .+. |+.|.+++|.++..
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~--gc~-L~~L~lrnN~l~tL-------- 247 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMV--GCK-LQLLNLRNNALTTL-------- 247 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchh--hhh-heeeeecccHHHhh--------
Confidence 45555566666666666655433 556666666666666666655443222 122 66666666666554
Q ss_pred CcccCCCCCCEEECcCCCCCCCC-cccccCCCCCcEEEcccCccc
Q 003200 229 RGLQNLTSLKHLDLDSNHFNSSI-PDWLYKFSPLECLNLRNNSLQ 272 (840)
Q Consensus 229 ~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~ 272 (840)
..+.++++|+.||+++|-+.+.- -..++.+..|+.|.|.+|.+.
T Consensus 248 ~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 248 RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 34566666666666666554321 122334455666666666554
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.31 E-value=4.2e-08 Score=83.83 Aligned_cols=86 Identities=23% Similarity=0.366 Sum_probs=47.5
Q ss_pred eEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCC
Q 003200 722 SLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNN 801 (840)
Q Consensus 722 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 801 (840)
+.+++++|.|+ .+|.++..++.|+.|+++.|.+. ..|..+..|.++-+||...|.+. .||..+-.-+.....++.++
T Consensus 80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgne 156 (177)
T KOG4579|consen 80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNE 156 (177)
T ss_pred hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCC
Confidence 55666666665 45555666666666666666666 45555555666666666666655 45544332233333344555
Q ss_pred cccccCCCC
Q 003200 802 NLTGKIPLS 810 (840)
Q Consensus 802 ~l~g~ip~~ 810 (840)
++.|.-|..
T Consensus 157 pl~~~~~~k 165 (177)
T KOG4579|consen 157 PLGDETKKK 165 (177)
T ss_pred cccccCccc
Confidence 555555544
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.30 E-value=2.8e-08 Score=84.83 Aligned_cols=113 Identities=23% Similarity=0.365 Sum_probs=90.3
Q ss_pred ccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccc-cCCCCCCeEeCCCCcc
Q 003200 677 FLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEV-TNLKALQSINFSFNTF 755 (840)
Q Consensus 677 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~Ls~N~l 755 (840)
.+..+||++|.+. .++.....+... ..|+..+|++|.+.. .|+.| ...+..+.|++++|.+
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~----------------~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~nei 89 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKG----------------YELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEI 89 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCC----------------ceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhh
Confidence 3567888888886 666655555443 234789999999984 45555 5567899999999999
Q ss_pred cccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCCC
Q 003200 756 TGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLS 810 (840)
Q Consensus 756 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 810 (840)
. .+|..+..++.|+.|+++.|.+. ..|+-+..|.++-.|+.-.|.+. +||..
T Consensus 90 s-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 90 S-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD 141 (177)
T ss_pred h-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence 9 89999999999999999999999 78888888999999998888764 46654
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.24 E-value=8.3e-08 Score=91.68 Aligned_cols=92 Identities=29% Similarity=0.269 Sum_probs=48.9
Q ss_pred ccCCCCCCEEeCCCCCCCCC---CccccccCCCCCcEEeccCCcc---cCCCC-------CCCCCCCCCCeEeccCcccc
Q 003200 102 LLDLKHLSYLDLSSNDFQGV---QIPRFIGSMRNLRYLNLSDTQF---VGMIP-------PQLGNLSDLQFLDLSSNYLY 168 (840)
Q Consensus 102 ~~~l~~L~~L~Ls~n~~~~~---~~p~~l~~l~~L~~L~Ls~n~i---~~~~p-------~~l~~l~~L~~L~Ls~n~~~ 168 (840)
+..+..+..+|||+|.|... .+...|.+-++|+..++++-.. ...+| .++-+|++|+..+||+|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34466667777777766431 1223344456666666665311 11111 23456666666677666665
Q ss_pred CCCcc----cccCCCCCCEEEccCcCCCC
Q 003200 169 VDNVW----WLSGLSFLEHLDLRSVNLSK 193 (840)
Q Consensus 169 ~~~~~----~~~~l~~L~~L~Ls~n~l~~ 193 (840)
...+. .+++-+.|+||.+++|.+..
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCc
Confidence 44443 34455666666666665543
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=2.7e-07 Score=89.42 Aligned_cols=207 Identities=20% Similarity=0.190 Sum_probs=108.0
Q ss_pred CCcccEEeccCCcCcc--ccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCC-CCcccccCCCCc
Q 003200 554 TKSLEGLKLTDNYLQG--EIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGK-IPISLKNCTALA 630 (840)
Q Consensus 554 ~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~ 630 (840)
++.++++||.+|.++. .+...+.+++.|+.|+++.|.+...+...=....+|+.|.|.+..+.-. ....+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4567777777777663 2333355667777777777776643321102345666666666554321 222334455555
Q ss_pred EEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccC
Q 003200 631 SLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTG 710 (840)
Q Consensus 631 ~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~ 710 (840)
+|.+|.|.+ +.+++..|.+...- +.+++|..-.|... -|..
T Consensus 150 elHmS~N~~---------------rq~n~Dd~c~e~~s-------~~v~tlh~~~c~~~-----------------~w~~ 190 (418)
T KOG2982|consen 150 ELHMSDNSL---------------RQLNLDDNCIEDWS-------TEVLTLHQLPCLEQ-----------------LWLN 190 (418)
T ss_pred hhhhccchh---------------hhhccccccccccc-------hhhhhhhcCCcHHH-----------------HHHH
Confidence 555554432 12222222222111 12223332222211 0011
Q ss_pred cccccccCCcceEEeCCCCccccc-CcccccCCCCCCeEeCCCCccccc-CCcchhccCCCCeEeCCCCcccccCCcc--
Q 003200 711 SVVYREILPLVSLLDISRNNFSGE-ILSEVTNLKALQSINFSFNTFTGR-IPESIGTMRALESVDFSVNQLSGEIPQS-- 786 (840)
Q Consensus 711 ~~~~~~~~~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-- 786 (840)
.....+.+|++..+-+..|.+... ..+....++.+-.|+|+.|++..- --+++..+++|.-|.+++|++...+...
T Consensus 191 ~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~er 270 (418)
T KOG2982|consen 191 KNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGER 270 (418)
T ss_pred HHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcc
Confidence 112223466667777777766432 233455566777888888887731 1245677788888888888876544322
Q ss_pred ----ccCCCCCCeEecc
Q 003200 787 ----MSSLTFLNHLNLS 799 (840)
Q Consensus 787 ----l~~l~~L~~L~ls 799 (840)
++.+++++.||=+
T Consensus 271 r~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 271 RFLLIARLTKVQVLNGS 287 (418)
T ss_pred eEEEEeeccceEEecCc
Confidence 5677888877743
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.17 E-value=9e-06 Score=85.37 Aligned_cols=57 Identities=18% Similarity=0.143 Sum_probs=34.2
Q ss_pred ccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCC
Q 003200 575 WMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDEN 637 (840)
Q Consensus 575 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N 637 (840)
+..+.+++.|++++|.++ .+|. + ..+|+.|.+++|.-...+|..+. ++|+.|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 344677888888888776 3442 2 24577777777543335554332 45666666665
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.01 E-value=9.7e-06 Score=74.70 Aligned_cols=84 Identities=20% Similarity=0.177 Sum_probs=47.8
Q ss_pred CCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEE
Q 003200 131 RNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLEL 210 (840)
Q Consensus 131 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L 210 (840)
.+...+||++|++... ..|..++.|.+|.+++|+|+.+.+.--..+++|+.|.|.+|.+..+.+. ..+..||+|++|
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCcccee
Confidence 4556777777776532 3466677777777777777766666555566666666666666554321 222333444444
Q ss_pred EcCCCCC
Q 003200 211 RLSNCSL 217 (840)
Q Consensus 211 ~L~~n~l 217 (840)
.+-+|..
T Consensus 119 tll~Npv 125 (233)
T KOG1644|consen 119 TLLGNPV 125 (233)
T ss_pred eecCCch
Confidence 4444433
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.99 E-value=9.4e-07 Score=84.63 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=18.4
Q ss_pred CCCCCcEEeccCCcccCC----CCCCCCCCCCCCeEeccC
Q 003200 129 SMRNLRYLNLSDTQFVGM----IPPQLGNLSDLQFLDLSS 164 (840)
Q Consensus 129 ~l~~L~~L~Ls~n~i~~~----~p~~l~~l~~L~~L~Ls~ 164 (840)
.+..++.++||+|.|... +...+.+-.+|+..+++.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd 67 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD 67 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence 355666666666665432 222334445555555544
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=5.9e-06 Score=57.43 Aligned_cols=36 Identities=28% Similarity=0.536 Sum_probs=18.7
Q ss_pred CCCeEeCCCCcccccCCcchhccCCCCeEeCCCCccc
Q 003200 744 ALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLS 780 (840)
Q Consensus 744 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 780 (840)
+|++|++++|+++ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555555
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.84 E-value=5.1e-07 Score=91.92 Aligned_cols=283 Identities=16% Similarity=0.128 Sum_probs=126.0
Q ss_pred CCCEEeCCCCCCCCC-CccccccCCCCCcEEeccCCcc-cCCCCCCC-CCCCCCCeEeccCc-cccCCCcc-cccCCCCC
Q 003200 107 HLSYLDLSSNDFQGV-QIPRFIGSMRNLRYLNLSDTQF-VGMIPPQL-GNLSDLQFLDLSSN-YLYVDNVW-WLSGLSFL 181 (840)
Q Consensus 107 ~L~~L~Ls~n~~~~~-~~p~~l~~l~~L~~L~Ls~n~i-~~~~p~~l-~~l~~L~~L~Ls~n-~~~~~~~~-~~~~l~~L 181 (840)
.|+.|.++++.-.+. .+-.+..+++++++|++.++.- ++..-..+ ..+++|++|++..| .++..... ...++++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 466666666542221 2233444566666666666542 11111111 35566666666664 22222222 23456666
Q ss_pred CEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCC-CCCCCc-ccccCCC
Q 003200 182 EHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNH-FNSSIP-DWLYKFS 259 (840)
Q Consensus 182 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~-l~~~~p-~~l~~l~ 259 (840)
++++++++.-..-.........+..++.+.+.+|.=..... +-..=+.+..+.++++..+. ++...- ..=..+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~----l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEA----LLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHH----HHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 66666665332222222223344445555444432111100 00001122233344433332 111110 0112345
Q ss_pred CCcEEEcccCcccc-ccchhh-hcCCCCcEEecccccCccccCcccc-cCCCCCcEEEcCCCcccccchHHHHhh-ccCC
Q 003200 260 PLECLNLRNNSLQG-TISDAI-GNLTSVSWLDLSINIGLQGRIPRSM-ANFCNLKSVNLRGVHLSQEISEILDIF-SGCV 335 (840)
Q Consensus 260 ~L~~L~L~~n~l~~-~~~~~l-~~l~~L~~L~L~~n~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~ 335 (840)
.||+|+.+++.-.+ ..-..+ .+..+|+.+.++.+..++..--..+ .+++.|+.+++..+...... .+..+ ..|+
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sls~~C~ 372 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASLSRNCP 372 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhhccCCc
Confidence 55666665553321 111122 2455666666665443333222222 23455666666555432211 11111 1111
Q ss_pred CCCCCEEEccCCcccccC-----ccccCCCCCCCEEEccCCccc-ccccccccCCCCCCEEEccCCcc
Q 003200 336 SNGLESLDMRSSSIYGHL-----TDQLGQFRNLVTLNLANNSIV-GLIPESFGQLSTLRELQIYDNKL 397 (840)
Q Consensus 336 ~~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l 397 (840)
.++++.++.+...... ...-..+..|+.+.+++++.. +..-+.+..+++|+.+++..++-
T Consensus 373 --~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 373 --RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred --hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 5666666655432211 122234567888888888643 33445567788999988888764
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.83 E-value=1.3e-05 Score=55.73 Aligned_cols=38 Identities=42% Similarity=0.695 Sum_probs=33.0
Q ss_pred CCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccc
Q 003200 767 RALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTG 805 (840)
Q Consensus 767 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 805 (840)
++|++|++++|+++ .+|..+++|++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 57999999999999 678789999999999999999874
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.80 E-value=7.8e-05 Score=78.47 Aligned_cols=76 Identities=20% Similarity=0.303 Sum_probs=48.0
Q ss_pred cCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCC-cCcCCCCcccccCCCC
Q 003200 551 VNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKN-RLSGKIPISLKNCTAL 629 (840)
Q Consensus 551 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L 629 (840)
+..+..++.|++++|.++ .+|. -..+|++|.++++.-...+|+.+. .+|+.|++++| .+. .+| .+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------ccc
Confidence 334577888888888776 3442 134588888877554446665553 57888888888 443 445 346
Q ss_pred cEEeCCCCcc
Q 003200 630 ASLDVDENEF 639 (840)
Q Consensus 630 ~~L~ls~N~l 639 (840)
+.|+++.+..
T Consensus 115 e~L~L~~n~~ 124 (426)
T PRK15386 115 RSLEIKGSAT 124 (426)
T ss_pred ceEEeCCCCC
Confidence 6677665543
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.67 E-value=1.9e-05 Score=90.57 Aligned_cols=97 Identities=21% Similarity=0.204 Sum_probs=44.4
Q ss_pred CCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcc
Q 003200 152 GNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGL 231 (840)
Q Consensus 152 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l 231 (840)
.++++|..||+|+.+++.. ..++.+++|+.|.+.+-.+....++ ..+-++++|+.||+|.......+......-+.-
T Consensus 170 ~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l-~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~ 246 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDL-IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECG 246 (699)
T ss_pred hccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhH-HHHhcccCCCeeeccccccccchHHHHHHHHhc
Confidence 3444444445544444332 3344444444444444444433222 222345555555555554433321100000222
Q ss_pred cCCCCCCEEECcCCCCCCCC
Q 003200 232 QNLTSLKHLDLDSNHFNSSI 251 (840)
Q Consensus 232 ~~l~~L~~L~Ls~n~l~~~~ 251 (840)
..+++|+.||.|+..+.+.+
T Consensus 247 ~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 247 MVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred ccCccccEEecCCcchhHHH
Confidence 34678888888877766443
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.65 E-value=1.1e-05 Score=92.31 Aligned_cols=140 Identities=21% Similarity=0.300 Sum_probs=103.3
Q ss_pred CCCCcEEeccCCccc-CCCCCCC-CCCCCCCeEeccCccccCCC-cccccCCCCCCEEEccCcCCCCCcchhhhcCCCCC
Q 003200 130 MRNLRYLNLSDTQFV-GMIPPQL-GNLSDLQFLDLSSNYLYVDN-VWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPS 206 (840)
Q Consensus 130 l~~L~~L~Ls~n~i~-~~~p~~l-~~l~~L~~L~Ls~n~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~ 206 (840)
-.+|++||+++...- ..-|..+ ..+|.|++|.+++-.+...+ .....++++|+.||+|+.+++.+ ..++++++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISRLKN 196 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----HHHhcccc
Confidence 368999999886432 1222233 46899999999987665554 33567899999999999999886 56789999
Q ss_pred CCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCC--c----ccccCCCCCcEEEcccCccccccchh
Q 003200 207 LLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSI--P----DWLYKFSPLECLNLRNNSLQGTISDA 278 (840)
Q Consensus 207 L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~--p----~~l~~l~~L~~L~L~~n~l~~~~~~~ 278 (840)
|+.|.+.+-.+...... ..+..+++|++||+|........ . +.-..+++|+.||.+++.+...+-+.
T Consensus 197 Lq~L~mrnLe~e~~~~l-----~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ 269 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDL-----IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE 269 (699)
T ss_pred HHHHhccCCCCCchhhH-----HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence 99999999888764332 56788999999999987654321 1 11235789999999998887654443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.62 E-value=0.00012 Score=67.59 Aligned_cols=105 Identities=27% Similarity=0.299 Sum_probs=66.3
Q ss_pred CCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCC
Q 003200 155 SDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNL 234 (840)
Q Consensus 155 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l 234 (840)
.....+||++|.+. ....|.+++.|.+|.+++|+|+.+...... .+++|..|.|.+|++..+... ..+..|
T Consensus 42 d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~--~~p~l~~L~LtnNsi~~l~dl-----~pLa~~ 112 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDT--FLPNLKTLILTNNSIQELGDL-----DPLASC 112 (233)
T ss_pred cccceecccccchh--hcccCCCccccceEEecCCcceeeccchhh--hccccceEEecCcchhhhhhc-----chhccC
Confidence 35678889988764 344577888888888888888877443322 356777777777777665443 446666
Q ss_pred CCCCEEECcCCCCCCCC---cccccCCCCCcEEEccc
Q 003200 235 TSLKHLDLDSNHFNSSI---PDWLYKFSPLECLNLRN 268 (840)
Q Consensus 235 ~~L~~L~Ls~n~l~~~~---p~~l~~l~~L~~L~L~~ 268 (840)
++|++|.+-+|..+..- --.+..+++|++||+..
T Consensus 113 p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 113 PKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 67777777666654221 11234455555555543
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.57 E-value=6.9e-06 Score=83.88 Aligned_cols=261 Identities=15% Similarity=0.049 Sum_probs=121.7
Q ss_pred ccCCCCCCEEECcCCCC-CCCCcccc-cCCCCCcEEEcccCc-cccccch-hhhcCCCCcEEecccccCcccc-Cccccc
Q 003200 231 LQNLTSLKHLDLDSNHF-NSSIPDWL-YKFSPLECLNLRNNS-LQGTISD-AIGNLTSVSWLDLSINIGLQGR-IPRSMA 305 (840)
Q Consensus 231 l~~l~~L~~L~Ls~n~l-~~~~p~~l-~~l~~L~~L~L~~n~-l~~~~~~-~l~~l~~L~~L~L~~n~~~~~~-~~~~l~ 305 (840)
-..++++++|.+.++.. +...-..+ ..+++|++|++..|. ++...-. -...+++|++++++++..+.+. +.....
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r 239 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR 239 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence 34455555555555541 11111112 245666666666643 3332222 2345677777777776555542 223344
Q ss_pred CCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCcc--ccCCCCCCCEEEccCCccc-cccccc-c
Q 003200 306 NFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTD--QLGQFRNLVTLNLANNSIV-GLIPES-F 381 (840)
Q Consensus 306 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~-~~~~~~-l 381 (840)
++..++.+.+.+|.-.+ .+.+..... .-..+.++++..|.......- .-..+..|+.++.+++.-. ...-.. -
T Consensus 240 G~~~l~~~~~kGC~e~~--le~l~~~~~-~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg 316 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELE--LEALLKAAA-YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG 316 (483)
T ss_pred cchhhhhhhhccccccc--HHHHHHHhc-cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh
Confidence 55556666555543221 111111110 001344455444422111110 0123556777777766432 211112 2
Q ss_pred cCCCCCCEEEccCCccccccChhh-hccCCCCCEEEccCcccceec--cCCCCCccCccEEecccccCCCCC-----Ccc
Q 003200 382 GQLSTLRELQIYDNKLNGTLSEFH-FANLTKLSWFRVGGNQLTFEV--KHDWIPPFQLVALGLHNCYVGSRF-----PQW 453 (840)
Q Consensus 382 ~~l~~L~~L~L~~n~l~~~i~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~l~~~~~~~~~-----~~~ 453 (840)
.++++|+.|.++.++.-+...... -.+.+.|+.+++.++...... .......+.|+++.++.|+..... ...
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~ 396 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS 396 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence 346777777777776322222112 234566777776665543222 222234556666666666432211 112
Q ss_pred ccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcc
Q 003200 454 LHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQ 494 (840)
Q Consensus 454 l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~ 494 (840)
-.....|+.+.++++.........+...+++|+.+++.+++
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 23355566666666665554444445555566665555544
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.45 E-value=5e-05 Score=73.43 Aligned_cols=96 Identities=22% Similarity=0.272 Sum_probs=59.0
Q ss_pred ccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCC--cccCCCCCCCCCCCCCCeEeccCccccC-CCc
Q 003200 96 GKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDT--QFVGMIPPQLGNLSDLQFLDLSSNYLYV-DNV 172 (840)
Q Consensus 96 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n--~i~~~~p~~l~~l~~L~~L~Ls~n~~~~-~~~ 172 (840)
|.+..-.-.+..|+.|++.+..++.. ..+-.+++|++|.+|.| .+++.++.....+++|++|++++|++.. ...
T Consensus 33 g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl 109 (260)
T KOG2739|consen 33 GKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL 109 (260)
T ss_pred CCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc
Confidence 33444444555666666666665532 23445778888888888 6666666555666788888888887763 233
Q ss_pred ccccCCCCCCEEEccCcCCCCC
Q 003200 173 WWLSGLSFLEHLDLRSVNLSKA 194 (840)
Q Consensus 173 ~~~~~l~~L~~L~Ls~n~l~~~ 194 (840)
..+..+.+|..|++.+|..+..
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~l 131 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTNL 131 (260)
T ss_pred chhhhhcchhhhhcccCCcccc
Confidence 4455556666666666655544
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.12 E-value=0.0012 Score=59.37 Aligned_cols=121 Identities=16% Similarity=0.192 Sum_probs=56.9
Q ss_pred cCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCc
Q 003200 551 VNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALA 630 (840)
Q Consensus 551 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 630 (840)
+.++++|+.+.+.. .+......+|.++++|+.+.+.++ +.......|..+++++.+.+.+ .+.......|..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 44566777777764 455555667777777888887775 5555556677777788887765 44334445666677777
Q ss_pred EEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCcccc
Q 003200 631 SLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFL 678 (840)
Q Consensus 631 ~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 678 (840)
.+++..+ +. .++...+... +++.+.+.. .+.......|.++++|
T Consensus 85 ~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 7777654 33 3343333344 666666654 3333444555555544
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.00 E-value=0.00021 Score=69.22 Aligned_cols=68 Identities=16% Similarity=0.180 Sum_probs=38.6
Q ss_pred cccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCc--cccCCCcccccCCCCCCEEEccCcCCCC
Q 003200 124 PRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSN--YLYVDNVWWLSGLSFLEHLDLRSVNLSK 193 (840)
Q Consensus 124 p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n--~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 193 (840)
......+..|+.|++.+..++.. ..+-.|++|++|+++.| ++......-...+++|++|++++|++..
T Consensus 36 ~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 36 GGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred ccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 33334456677777666665532 23556677777777777 4443333344445666666666665554
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.95 E-value=0.0018 Score=58.25 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=20.7
Q ss_pred ccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEc
Q 003200 127 IGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDL 186 (840)
Q Consensus 127 l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 186 (840)
+..+++|+.+.+.. .+...-..+|.++++|+.+.+.++ +.......|.++++|+.+.+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccc
Confidence 34444555555543 233333344455555555555443 33333334444444444444
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.0002 Score=69.43 Aligned_cols=100 Identities=29% Similarity=0.206 Sum_probs=56.9
Q ss_pred CcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCC-cccccCCCCcEEe
Q 003200 555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIP-ISLKNCTALASLD 633 (840)
Q Consensus 555 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~ 633 (840)
.+.+.|+..++.++++ .....++.|++|.||-|+|+..- .|..|+.|++|+|..|.|..... ..+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3455666666666533 23345666666777766666442 35666667777777766652211 2456667777777
Q ss_pred CCCCcccccCChh----hhhccCCccEEE
Q 003200 634 VDENEFVGNIPTW----FGERFSRMLVLI 658 (840)
Q Consensus 634 ls~N~l~~~~p~~----~~~~l~~L~~L~ 658 (840)
|..|.-.|.-+.. ....+++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777666555432 222455555554
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.19 E-value=0.00048 Score=78.08 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=18.6
Q ss_pred CCEEEccCCccccc-ccccccC-CCCCCEEEccCCcc
Q 003200 363 LVTLNLANNSIVGL-IPESFGQ-LSTLRELQIYDNKL 397 (840)
Q Consensus 363 L~~L~L~~n~l~~~-~~~~l~~-l~~L~~L~L~~n~l 397 (840)
++.|+++.+..... .-..... +..++.+++.++..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 77777777754322 1111111 55667777776654
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.00028 Score=68.39 Aligned_cols=83 Identities=23% Similarity=0.226 Sum_probs=53.5
Q ss_pred CCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCC-cccccCCCCCC
Q 003200 104 DLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDN-VWWLSGLSFLE 182 (840)
Q Consensus 104 ~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~-~~~~~~l~~L~ 182 (840)
.+.+.+.|++-++.+.++.+ ..+++.|++|.||-|.|+..- .+..|++|+.|+|..|.|.... ...+.++++|+
T Consensus 17 dl~~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCccHHHH---HHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 45566777777777776533 345677888888888777443 3677777777777777665442 34555666666
Q ss_pred EEEccCcCC
Q 003200 183 HLDLRSVNL 191 (840)
Q Consensus 183 ~L~Ls~n~l 191 (840)
.|-|..|.-
T Consensus 92 ~LWL~ENPC 100 (388)
T KOG2123|consen 92 TLWLDENPC 100 (388)
T ss_pred hHhhccCCc
Confidence 666655543
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.94 E-value=0.0016 Score=73.84 Aligned_cols=136 Identities=27% Similarity=0.249 Sum_probs=63.7
Q ss_pred CCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCC-CCCcCCCCCCCCCCcccCCCCCCEEECcCCC-CCCCCcccc
Q 003200 178 LSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNC-SLHHFPTLASPIPRGLQNLTSLKHLDLDSNH-FNSSIPDWL 255 (840)
Q Consensus 178 l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l 255 (840)
++.|+.|.+..+.-............++.|++|+++.+ ......+. ........+++|+.|+++++. ++...-..+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL--LLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh--HhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 45555555555432222223344455666666666653 11111100 001233445667777777666 443333333
Q ss_pred cC-CCCCcEEEcccCc-cccc-cchhhhcCCCCcEEecccccCcccc-CcccccCCCCCcEEEc
Q 003200 256 YK-FSPLECLNLRNNS-LQGT-ISDAIGNLTSVSWLDLSINIGLQGR-IPRSMANFCNLKSVNL 315 (840)
Q Consensus 256 ~~-l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~l~~l~~L~~L~l 315 (840)
+. +++|++|.+.+|. ++.. +......++.|++|+++++..+... +.....++++++.+.+
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 32 5677777766665 3332 2223345666777777765443221 2222333444444443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.73 E-value=0.0042 Score=35.75 Aligned_cols=18 Identities=50% Similarity=0.720 Sum_probs=7.8
Q ss_pred CCeEeCCCCcccccCCccc
Q 003200 769 LESVDFSVNQLSGEIPQSM 787 (840)
Q Consensus 769 L~~L~Ls~N~l~~~~p~~l 787 (840)
|++|||++|+++ .+|.+|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 344444444444 344333
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.41 E-value=0.0062 Score=35.01 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=11.5
Q ss_pred CCeEeCCCCcccccCCcchhc
Q 003200 745 LQSINFSFNTFTGRIPESIGT 765 (840)
Q Consensus 745 L~~L~Ls~N~l~~~~p~~l~~ 765 (840)
|++|||++|+++ .+|.+|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 556666666666 55555543
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.74 E-value=0.00046 Score=75.85 Aligned_cols=83 Identities=22% Similarity=0.184 Sum_probs=44.2
Q ss_pred ccEEEccCcccccccc-----cccCCCcccEEEcccCcCCCCC--------CCCCCCCcEEEccCCcCcccCCchhhhcc
Q 003200 485 LKFLDVGLNQFHGKIS-----NLTKNTQLLFLSVNSNNMSGPL--------PLVSSNLVYLDFSNNSFSGSISHFLCYRV 551 (840)
Q Consensus 485 L~~L~l~~n~l~~~~~-----~~~~~~~L~~L~l~~n~l~~~~--------~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 551 (840)
+..+.+.+|.+..... .+...+.|..|+++.|.+.+.- +.....+++|++..|.+++.....+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6677777777765422 2333456666666666665311 11113445555555555555555555555
Q ss_pred CCCCcccEEeccCCcC
Q 003200 552 NETKSLEGLKLTDNYL 567 (840)
Q Consensus 552 ~~~~~L~~L~Ls~n~l 567 (840)
.....++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 5555555555555554
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.64 E-value=0.00055 Score=75.22 Aligned_cols=182 Identities=23% Similarity=0.230 Sum_probs=95.8
Q ss_pred ccEEEcccCcCCCCCCC-------CCCCCcEEEccCCcCcccCCchhhhccCCC-CcccEEeccCCcCccc----cCccc
Q 003200 508 LLFLSVNSNNMSGPLPL-------VSSNLVYLDFSNNSFSGSISHFLCYRVNET-KSLEGLKLTDNYLQGE----IPDCW 575 (840)
Q Consensus 508 L~~L~l~~n~l~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~----~~~~~ 575 (840)
+..+.+.+|.+...... ..+.|..|++++|.+.+.....++..+... ..+++|++..|.+++. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55666666666543222 145666777777777655555555555554 5566677766666542 33344
Q ss_pred cCCCCcCEEEccCCcCCC----CCCcccC----CCCcccEEEccCCcCcCCC----CcccccCCC-CcEEeCCCCccccc
Q 003200 576 MSYQNLKVLKLSNNKFSG----NLPNSLG----SITSLVWLYLRKNRLSGKI----PISLKNCTA-LASLDVDENEFVGN 642 (840)
Q Consensus 576 ~~l~~L~~L~Ls~n~l~~----~~~~~l~----~l~~L~~L~L~~n~l~~~~----p~~l~~l~~-L~~L~ls~N~l~~~ 642 (840)
.....++.++++.|.+.. .++..+. ...++++|.+.+|.++... ...+...+. +..+++..|++.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 456667777777776632 1122222 3456666777776665211 112223333 55566666665533
Q ss_pred CChhhhhcc----CCccEEEccCCcccccC----CccccCccccceeeccccccc
Q 003200 643 IPTWFGERF----SRMLVLILRSNQFHGPL----PKTICDLAFLQILDLADNNLS 689 (840)
Q Consensus 643 ~p~~~~~~l----~~L~~L~l~~n~l~~~~----p~~l~~l~~L~~L~Ls~N~l~ 689 (840)
.-..+...+ ..+++++++.|.|+... ...+..++.++++.+++|.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 121111111 34456666666665432 233344556666666666654
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.62 E-value=0.065 Score=28.47 Aligned_cols=13 Identities=38% Similarity=0.639 Sum_probs=4.6
Q ss_pred CCCeEeCCCCccc
Q 003200 768 ALESVDFSVNQLS 780 (840)
Q Consensus 768 ~L~~L~Ls~N~l~ 780 (840)
+|+.|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.13 E-value=0.0067 Score=57.53 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=72.9
Q ss_pred cceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEecc
Q 003200 720 LVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLS 799 (840)
Q Consensus 720 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 799 (840)
..+.||++.|++. ..-..|+-++.|..||++.|.+. ..|..++++..+..+++..|..+ ..|.++...+.+++++.-
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 3488999999987 44556777889999999999999 89999999999999999999998 789999999999999999
Q ss_pred CCcccc
Q 003200 800 NNNLTG 805 (840)
Q Consensus 800 ~N~l~g 805 (840)
.|++..
T Consensus 120 ~~~~~~ 125 (326)
T KOG0473|consen 120 KTEFFR 125 (326)
T ss_pred cCcchH
Confidence 998653
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.34 E-value=0.12 Score=27.52 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=6.0
Q ss_pred CCCeEeCCCCccc
Q 003200 744 ALQSINFSFNTFT 756 (840)
Q Consensus 744 ~L~~L~Ls~N~l~ 756 (840)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4566666666655
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.41 E-value=0.015 Score=55.34 Aligned_cols=89 Identities=19% Similarity=0.229 Sum_probs=66.8
Q ss_pred ccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEe
Q 003200 670 KTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSIN 749 (840)
Q Consensus 670 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 749 (840)
..+......+.||++.|++- ..-..++-++.+ ..||++.|.+. ..|.+++.+..+..++
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~-------------------~rl~~sknq~~-~~~~d~~q~~e~~~~~ 94 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRL-------------------VRLDLSKNQIK-FLPKDAKQQRETVNAA 94 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHH-------------------HHHhccHhhHh-hChhhHHHHHHHHHHH
Confidence 34555667778888888765 333444444444 67888888887 6788888888888888
Q ss_pred CCCCcccccCCcchhccCCCCeEeCCCCccc
Q 003200 750 FSFNTFTGRIPESIGTMRALESVDFSVNQLS 780 (840)
Q Consensus 750 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 780 (840)
+..|... ..|.+++..+.++++++-.|.+.
T Consensus 95 ~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 95 SHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hhccchh-hCCccccccCCcchhhhccCcch
Confidence 8888888 78888888888888888888865
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.89 E-value=0.33 Score=29.14 Aligned_cols=19 Identities=42% Similarity=0.663 Sum_probs=11.9
Q ss_pred cCCCCeEeCCCCcccccCCc
Q 003200 766 MRALESVDFSVNQLSGEIPQ 785 (840)
Q Consensus 766 l~~L~~L~Ls~N~l~~~~p~ 785 (840)
+++|++|+|++|+++ .+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCCEEECCCCcCC-cCCH
Confidence 356677777777776 4443
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.89 E-value=0.33 Score=29.14 Aligned_cols=19 Identities=42% Similarity=0.663 Sum_probs=11.9
Q ss_pred cCCCCeEeCCCCcccccCCc
Q 003200 766 MRALESVDFSVNQLSGEIPQ 785 (840)
Q Consensus 766 l~~L~~L~Ls~N~l~~~~p~ 785 (840)
+++|++|+|++|+++ .+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCCEEECCCCcCC-cCCH
Confidence 356677777777776 4443
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.00 E-value=0.22 Score=29.22 Aligned_cols=11 Identities=27% Similarity=0.549 Sum_probs=3.4
Q ss_pred CCeEeCCCCcc
Q 003200 745 LQSINFSFNTF 755 (840)
Q Consensus 745 L~~L~Ls~N~l 755 (840)
|++|+|++|++
T Consensus 4 L~~L~l~~n~i 14 (24)
T PF13516_consen 4 LETLDLSNNQI 14 (24)
T ss_dssp -SEEE-TSSBE
T ss_pred CCEEEccCCcC
Confidence 33333333333
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.25 E-value=0.15 Score=29.99 Aligned_cols=18 Identities=39% Similarity=0.495 Sum_probs=10.0
Q ss_pred CCCCeEeCCCCcccccCC
Q 003200 767 RALESVDFSVNQLSGEIP 784 (840)
Q Consensus 767 ~~L~~L~Ls~N~l~~~~p 784 (840)
++|++|+|++|++++...
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 566777777777665433
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.70 E-value=0.69 Score=27.70 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=11.0
Q ss_pred CCCCCeEeCCCCcccc
Q 003200 742 LKALQSINFSFNTFTG 757 (840)
Q Consensus 742 l~~L~~L~Ls~N~l~~ 757 (840)
+++|+.|+|++|+++.
T Consensus 1 L~~L~~L~L~~N~l~~ 16 (26)
T smart00370 1 LPNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCCEEECCCCcCCc
Confidence 3567777777777773
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.70 E-value=0.69 Score=27.70 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=11.0
Q ss_pred CCCCCeEeCCCCcccc
Q 003200 742 LKALQSINFSFNTFTG 757 (840)
Q Consensus 742 l~~L~~L~Ls~N~l~~ 757 (840)
+++|+.|+|++|+++.
T Consensus 1 L~~L~~L~L~~N~l~~ 16 (26)
T smart00369 1 LPNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCCEEECCCCcCCc
Confidence 3567777777777773
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.23 E-value=0.2 Score=47.02 Aligned_cols=84 Identities=17% Similarity=0.147 Sum_probs=47.7
Q ss_pred CCCEEECcCCCCCCCCcccccCCCCCcEEEcccCccc-cccchhhh-cCCCCcEEecccccCccccCcccccCCCCCcEE
Q 003200 236 SLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQ-GTISDAIG-NLTSVSWLDLSINIGLQGRIPRSMANFCNLKSV 313 (840)
Q Consensus 236 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~~~~l~-~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L 313 (840)
.++.+|-++..|...--+.+.+++.++.|.+.+|.-- .-.-+.++ -.++|+.|++++|..++..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4555666665555444455556666666666665421 11111122 246677777777666666666666677777777
Q ss_pred EcCCCc
Q 003200 314 NLRGVH 319 (840)
Q Consensus 314 ~l~~~~ 319 (840)
.+.+-.
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 666544
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.00 E-value=0.24 Score=46.57 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=15.9
Q ss_pred CCCCEEECcCC-CCCCCCcccccCCCCCcEEEccc
Q 003200 235 TSLKHLDLDSN-HFNSSIPDWLYKFSPLECLNLRN 268 (840)
Q Consensus 235 ~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L~~ 268 (840)
++|+.|++++| +|+..--.++..+++|+.|.+.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 34555555544 23333334445555555555543
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.88 E-value=1.8 Score=25.83 Aligned_cols=17 Identities=35% Similarity=0.685 Sum_probs=10.0
Q ss_pred CCCeEeCCCCcccccCCc
Q 003200 768 ALESVDFSVNQLSGEIPQ 785 (840)
Q Consensus 768 ~L~~L~Ls~N~l~~~~p~ 785 (840)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4566666666665 4443
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.28 E-value=2.6 Score=25.32 Aligned_cols=15 Identities=33% Similarity=0.612 Sum_probs=10.7
Q ss_pred cCCCCeEeCCCCccc
Q 003200 766 MRALESVDFSVNQLS 780 (840)
Q Consensus 766 l~~L~~L~Ls~N~l~ 780 (840)
+++|+.|++++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777775
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=72.90 E-value=24 Score=38.13 Aligned_cols=60 Identities=27% Similarity=0.230 Sum_probs=31.0
Q ss_pred ccEEeccCCcCccccCc---cccCCCCcCEEEccCCcCCC----CCCcccCCCCcccEEEccCCcCc
Q 003200 557 LEGLKLTDNYLQGEIPD---CWMSYQNLKVLKLSNNKFSG----NLPNSLGSITSLVWLYLRKNRLS 616 (840)
Q Consensus 557 L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~ 616 (840)
+..+.++.+......-. ....-+.++.|++++|.-.. .+|..+..-..++....+.|...
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 55566666655422211 12334556777777766543 33444444455666666655543
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=60.37 E-value=6.8 Score=23.94 Aligned_cols=14 Identities=36% Similarity=0.548 Sum_probs=9.0
Q ss_pred CCCCeEeCCCCccc
Q 003200 767 RALESVDFSVNQLS 780 (840)
Q Consensus 767 ~~L~~L~Ls~N~l~ 780 (840)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45666777776664
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=51.76 E-value=60 Score=35.25 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=28.5
Q ss_pred CCCEEEccCCcccccCcc---ccCCCCCCCEEEccCCccccc----ccccccCCCCCCEEEccCCcc
Q 003200 338 GLESLDMRSSSIYGHLTD---QLGQFRNLVTLNLANNSIVGL----IPESFGQLSTLRELQIYDNKL 397 (840)
Q Consensus 338 ~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l 397 (840)
-+..+.++.+........ ....-+.+.+|++++|..... +|.....-..++....+.|..
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 355555555554332221 122335577777777755422 233333334455555555543
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=47.32 E-value=9.1 Score=42.06 Aligned_cols=69 Identities=41% Similarity=0.432 Sum_probs=43.9
Q ss_pred CCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCC--CCCcEEEcccCccccc
Q 003200 202 NTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKF--SPLECLNLRNNSLQGT 274 (840)
Q Consensus 202 ~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~ 274 (840)
.+.+.+..+.|++|++..+.... ..-..-++|+.|+|++|...-....++.++ ..|++|-+.+|++...
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~s----slsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALS----SLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccchhhchhhhh----HHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 45677888888888877764321 223445788899999883222222334433 4578888899887653
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=31.21 E-value=28 Score=38.50 Aligned_cols=67 Identities=21% Similarity=0.240 Sum_probs=48.8
Q ss_pred cCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCC--CCCcCCCCCCCCCCcccCC--CCCCEEECcCCCCCCC
Q 003200 176 SGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNC--SLHHFPTLASPIPRGLQNL--TSLKHLDLDSNHFNSS 250 (840)
Q Consensus 176 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~l~~~l~~l--~~L~~L~Ls~n~l~~~ 250 (840)
.+.+.+..+.|++|++..+..+.......|+|..|+|++| .+... .++.++ ..|++|-+.+|.+...
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--------~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--------SELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--------hhhhhhcCCCHHHeeecCCccccc
Confidence 3567788888999998887766666667899999999999 44433 223333 3578899999987644
No 95
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=29.33 E-value=36 Score=20.16 Aligned_cols=11 Identities=45% Similarity=0.537 Sum_probs=5.2
Q ss_pred CCCCeEeccCc
Q 003200 155 SDLQFLDLSSN 165 (840)
Q Consensus 155 ~~L~~L~Ls~n 165 (840)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 96
>PF08093 Toxin_23: Magi 5 toxic peptide family; InterPro: IPR012628 This family consists of toxic peptides (Magi 5) found in the venom of the Hexathelidae spider. Magi 5 is the first spider toxin with binding affinity to site 4 of a mammalian sodium channel and the toxin has an insecticidal effect on larvae, causing paralysis when injected into the larvae.; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1HP3_A 1G9P_A 2GX1_A.
Probab=22.22 E-value=67 Score=19.79 Aligned_cols=15 Identities=47% Similarity=1.323 Sum_probs=9.5
Q ss_pred CCCCC--CCCCCccccc
Q 003200 53 LASWT--GDGDCCTWAG 67 (840)
Q Consensus 53 l~~W~--~~~~~c~w~g 67 (840)
+..|+ .+.+||-|..
T Consensus 4 l~~~~Cssdk~CCg~tp 20 (30)
T PF08093_consen 4 LTFWRCSSDKDCCGWTP 20 (30)
T ss_dssp -SSSB-SSCCCCCTT--
T ss_pred eeceeecCCcccccCcc
Confidence 45675 5789999984
No 97
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.40 E-value=51 Score=44.20 Aligned_cols=33 Identities=36% Similarity=0.316 Sum_probs=28.6
Q ss_pred eCCCCcccccCcccccCCCCCCeEeCCCCcccc
Q 003200 725 DISRNNFSGEILSEVTNLKALQSINFSFNTFTG 757 (840)
Q Consensus 725 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 757 (840)
||++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 689999997777778899999999999998873
No 98
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.12 E-value=57 Score=43.74 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=29.0
Q ss_pred eCCCCcccccCCcchhccCCCCeEeCCCCcccc
Q 003200 749 NFSFNTFTGRIPESIGTMRALESVDFSVNQLSG 781 (840)
Q Consensus 749 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 781 (840)
||++|+|+...+..|..+++|+.|+|++|++..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 689999997777888999999999999998863
Done!