Query 003200
Match_columns 840
No_of_seqs 752 out of 4233
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 16:55:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.5E-93 5.1E-98 850.4 55.5 710 29-837 7-750 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.9E-71 6.7E-76 660.4 46.9 618 98-806 92-743 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 8.8E-60 3E-64 556.1 53.0 587 106-809 25-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-58 6.3E-63 544.8 51.2 583 74-784 24-626 (680)
5 3t6q_A CD180 antigen; protein- 100.0 7.9E-55 2.7E-59 506.8 43.7 530 96-808 25-564 (606)
6 3t6q_A CD180 antigen; protein- 100.0 1.9E-53 6.6E-58 495.2 44.2 529 75-784 33-564 (606)
7 4eco_A Uncharacterized protein 100.0 2.8E-54 9.7E-59 500.8 27.8 509 31-805 27-601 (636)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-52 5.5E-57 487.4 42.1 520 106-809 32-563 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 3.4E-52 1.2E-56 484.6 37.1 521 74-784 31-562 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 8.5E-51 2.9E-55 488.1 41.3 524 105-808 23-564 (844)
11 4ecn_A Leucine-rich repeat pro 100.0 2.2E-51 7.7E-56 482.6 32.5 309 29-402 264-635 (876)
12 3j0a_A TOLL-like receptor 5; m 100.0 4.6E-49 1.6E-53 473.0 38.5 530 109-827 7-561 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 8.7E-48 3E-52 444.6 38.1 231 556-812 305-539 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 4E-48 1.4E-52 447.4 33.5 499 106-785 28-536 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 2.4E-46 8.2E-51 430.1 35.4 199 580-809 311-515 (549)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-45 5.1E-50 423.5 36.3 496 62-644 3-514 (549)
17 4g8a_A TOLL-like receptor 4; l 100.0 3.4E-44 1.1E-48 420.7 42.1 515 107-805 53-581 (635)
18 2z7x_B TOLL-like receptor 1, v 100.0 8.7E-45 3E-49 413.9 24.7 463 209-808 4-485 (520)
19 2z7x_B TOLL-like receptor 1, v 100.0 3.1E-44 1.1E-48 409.3 25.6 467 109-784 3-485 (520)
20 4g8a_A TOLL-like receptor 4; l 100.0 1.1E-42 3.9E-47 407.6 38.0 138 75-221 52-189 (635)
21 4eco_A Uncharacterized protein 100.0 2.8E-44 9.5E-49 417.0 21.6 367 346-824 192-597 (636)
22 4ecn_A Leucine-rich repeat pro 100.0 7.8E-43 2.7E-47 410.1 27.6 355 347-807 435-843 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.5E-42 1.9E-46 393.8 26.7 161 625-809 351-515 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.5E-41 1.9E-45 385.5 28.3 462 109-784 34-514 (562)
25 1ogq_A PGIP-2, polygalacturona 100.0 3.8E-40 1.3E-44 347.8 18.5 293 30-421 2-302 (313)
26 3v47_A TOLL-like receptor 5B a 100.0 1.5E-38 5.2E-43 356.1 31.4 374 361-813 30-417 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 8.5E-39 2.9E-43 354.3 22.3 389 338-810 12-417 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 2.1E-38 7.3E-43 351.0 24.1 422 234-810 10-435 (454)
29 3v47_A TOLL-like receptor 5B a 100.0 1.3E-36 4.5E-41 340.4 31.7 386 237-693 12-412 (455)
30 1ogq_A PGIP-2, polygalacturona 100.0 4.2E-36 1.4E-40 316.8 20.1 259 555-836 50-313 (313)
31 3bz5_A Internalin-J, INLJ; leu 100.0 6.7E-35 2.3E-39 323.3 29.5 364 349-810 30-393 (457)
32 3bz5_A Internalin-J, INLJ; leu 100.0 3.7E-35 1.3E-39 325.4 26.9 366 321-789 31-396 (457)
33 1o6v_A Internalin A; bacterial 100.0 9.2E-34 3.2E-38 317.3 32.5 346 359-805 44-389 (466)
34 1o6v_A Internalin A; bacterial 100.0 3.6E-33 1.2E-37 312.5 34.0 344 76-498 47-390 (466)
35 2id5_A Lingo-1, leucine rich r 100.0 1.8E-34 6.1E-39 324.8 23.5 321 364-781 14-334 (477)
36 2id5_A Lingo-1, leucine rich r 100.0 3E-33 1E-37 314.8 28.6 312 97-426 25-336 (477)
37 3o6n_A APL1; leucine-rich repe 100.0 1.5E-32 5.2E-37 300.3 28.4 238 554-830 140-378 (390)
38 3o6n_A APL1; leucine-rich repe 100.0 6.2E-33 2.1E-37 303.3 23.8 211 52-292 2-214 (390)
39 3oja_B Anopheles plasmodium-re 100.0 2.1E-32 7.3E-37 315.6 28.6 238 554-830 146-384 (597)
40 3oja_B Anopheles plasmodium-re 100.0 1E-31 3.6E-36 309.8 25.8 209 51-292 7-220 (597)
41 4fcg_A Uncharacterized protein 100.0 8.6E-33 3E-37 293.2 14.5 272 27-320 20-313 (328)
42 4fmz_A Internalin; leucine ric 100.0 5.2E-31 1.8E-35 283.5 28.0 305 432-804 42-346 (347)
43 4fmz_A Internalin; leucine ric 100.0 4E-30 1.4E-34 276.5 31.1 307 102-471 40-346 (347)
44 1z7x_W Ribonuclease inhibitor; 100.0 1.4E-33 4.8E-38 316.4 -2.0 385 361-805 3-441 (461)
45 1z7x_W Ribonuclease inhibitor; 100.0 1.7E-32 5.7E-37 307.7 1.4 217 556-786 200-446 (461)
46 1xku_A Decorin; proteoglycan, 100.0 7.2E-29 2.5E-33 264.4 27.6 271 106-420 52-329 (330)
47 2ft3_A Biglycan; proteoglycan, 100.0 3.3E-29 1.1E-33 267.2 24.4 289 107-421 34-331 (332)
48 2ft3_A Biglycan; proteoglycan, 100.0 4.5E-29 1.6E-33 266.1 24.9 246 527-804 54-307 (332)
49 1xku_A Decorin; proteoglycan, 100.0 1.7E-28 5.8E-33 261.6 28.4 268 506-804 31-306 (330)
50 4fcg_A Uncharacterized protein 100.0 1.5E-28 5.2E-33 260.5 19.1 227 554-804 80-314 (328)
51 2z66_A Variable lymphocyte rec 100.0 6.9E-28 2.4E-32 254.0 21.0 232 555-807 28-264 (306)
52 2z80_A TOLL-like receptor 2, v 100.0 1.6E-28 5.5E-33 264.3 16.4 276 508-809 33-319 (353)
53 2z80_A TOLL-like receptor 2, v 100.0 2.4E-27 8.2E-32 255.1 21.5 288 56-424 23-315 (353)
54 2z66_A Variable lymphocyte rec 100.0 5.4E-28 1.9E-32 254.8 16.0 277 509-810 10-293 (306)
55 3ogk_B Coronatine-insensitive 100.0 2E-29 6.7E-34 292.2 4.9 131 257-393 110-251 (592)
56 3ogk_B Coronatine-insensitive 99.9 2.9E-29 9.8E-34 290.9 4.5 364 60-493 39-446 (592)
57 3zyi_A Leucine-rich repeat-con 99.9 1.2E-26 4.1E-31 258.4 25.4 228 555-804 75-303 (452)
58 1ozn_A Reticulon 4 receptor; N 99.9 4.6E-27 1.6E-31 244.8 20.3 235 555-810 32-267 (285)
59 1ozn_A Reticulon 4 receptor; N 99.9 2.5E-27 8.6E-32 246.8 18.2 254 510-788 15-269 (285)
60 3zyj_A Leucine-rich repeat-con 99.9 1.1E-26 3.8E-31 257.7 24.4 227 555-803 64-291 (440)
61 3zyi_A Leucine-rich repeat-con 99.9 2.8E-26 9.5E-31 255.5 24.4 249 508-781 56-304 (452)
62 3zyj_A Leucine-rich repeat-con 99.9 4.8E-26 1.7E-30 252.6 24.3 248 508-780 45-292 (440)
63 1wwl_A Monocyte differentiatio 99.9 2.5E-28 8.5E-33 257.5 5.6 244 528-805 44-310 (312)
64 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-26 3.9E-31 245.5 11.5 245 527-809 34-281 (317)
65 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-24 4.1E-29 247.8 28.3 261 459-808 41-301 (622)
66 3g06_A SSPH2 (leucine-rich rep 99.9 9.8E-25 3.3E-29 248.5 25.4 268 435-791 41-308 (622)
67 1wwl_A Monocyte differentiatio 99.9 3.2E-27 1.1E-31 249.1 4.0 246 553-827 41-309 (312)
68 3oja_A Leucine-rich immune mol 99.9 5.6E-26 1.9E-30 254.1 14.2 222 553-808 32-255 (487)
69 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-26 3.8E-31 245.5 8.0 241 531-809 14-256 (317)
70 2z62_A TOLL-like receptor 4, v 99.9 1E-24 3.5E-29 225.8 20.6 226 561-810 13-243 (276)
71 2p1m_B Transport inhibitor res 99.9 8.5E-27 2.9E-31 270.2 2.1 236 553-808 287-548 (594)
72 3oja_A Leucine-rich immune mol 99.9 1.5E-25 5.3E-30 250.5 11.0 236 526-799 33-270 (487)
73 2o6q_A Variable lymphocyte rec 99.9 7.3E-24 2.5E-28 218.4 22.3 213 60-292 2-214 (270)
74 2p1m_B Transport inhibitor res 99.9 3E-26 1E-30 265.7 1.4 95 230-324 61-172 (594)
75 2z62_A TOLL-like receptor 4, v 99.9 8.7E-24 3E-28 218.8 19.5 212 555-784 28-241 (276)
76 2o6q_A Variable lymphocyte rec 99.9 3.6E-23 1.2E-27 213.2 22.1 202 556-780 17-218 (270)
77 3rfs_A Internalin B, repeat mo 99.9 2.8E-24 9.7E-29 221.6 13.2 222 556-810 20-241 (272)
78 2ca6_A RAN GTPase-activating p 99.9 2.1E-25 7.2E-30 243.1 2.3 242 548-808 25-320 (386)
79 1p9a_G Platelet glycoprotein I 99.9 7.6E-23 2.6E-27 212.4 20.7 201 553-780 8-208 (290)
80 3rfs_A Internalin B, repeat mo 99.9 1.7E-23 6E-28 215.7 15.5 209 553-792 39-247 (272)
81 3goz_A Leucine-rich repeat-con 99.9 1.5E-24 5.1E-29 233.8 4.5 236 556-806 23-299 (362)
82 1p9a_G Platelet glycoprotein I 99.9 1.5E-22 5E-27 210.2 19.2 203 575-804 6-208 (290)
83 4glp_A Monocyte differentiatio 99.9 1.8E-23 6.1E-28 220.2 11.0 205 555-805 91-308 (310)
84 4glp_A Monocyte differentiatio 99.9 4E-23 1.4E-27 217.5 11.6 197 603-824 91-304 (310)
85 3m19_A Variable lymphocyte rec 99.9 2.4E-22 8E-27 204.6 16.1 179 580-781 15-193 (251)
86 3goz_A Leucine-rich repeat-con 99.9 4.5E-24 1.5E-28 230.0 3.6 242 527-786 22-303 (362)
87 2ca6_A RAN GTPase-activating p 99.9 8.5E-24 2.9E-28 230.4 4.2 239 526-784 31-320 (386)
88 2ast_B S-phase kinase-associat 99.9 1.4E-23 4.9E-28 224.3 4.7 240 59-318 33-282 (336)
89 2xwt_C Thyrotropin receptor; s 99.9 5.5E-22 1.9E-26 200.4 15.4 196 580-801 32-236 (239)
90 2ast_B S-phase kinase-associat 99.9 3.7E-23 1.3E-27 221.1 6.4 251 528-810 48-312 (336)
91 2xwt_C Thyrotropin receptor; s 99.9 1.2E-21 4E-26 198.0 14.6 198 555-778 31-237 (239)
92 3m19_A Variable lymphocyte rec 99.9 6.4E-21 2.2E-25 194.0 19.2 180 556-758 15-194 (251)
93 1h6u_A Internalin H; cell adhe 99.9 2.7E-21 9.3E-26 202.8 16.5 191 554-780 40-230 (308)
94 1h6u_A Internalin H; cell adhe 99.9 3E-21 1E-25 202.6 16.4 191 526-756 40-230 (308)
95 4ay9_X Follicle-stimulating ho 99.8 6E-20 2.1E-24 196.6 18.0 122 509-634 12-135 (350)
96 3cvr_A Invasion plasmid antige 99.8 4E-20 1.4E-24 207.8 17.0 189 555-791 59-254 (571)
97 3cvr_A Invasion plasmid antige 99.8 4.3E-20 1.5E-24 207.6 16.8 196 528-768 60-255 (571)
98 2o6s_A Variable lymphocyte rec 99.8 8.7E-20 3E-24 179.9 15.5 127 559-689 11-137 (208)
99 2o6s_A Variable lymphocyte rec 99.8 5.9E-20 2E-24 181.1 13.7 175 582-810 10-184 (208)
100 4ay9_X Follicle-stimulating ho 99.8 1.2E-19 4.2E-24 194.2 15.6 241 529-802 11-257 (350)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 9.1E-20 3.1E-24 180.9 10.8 155 631-808 15-170 (220)
102 3e6j_A Variable lymphocyte rec 99.8 1.8E-18 6E-23 172.8 18.5 165 55-275 11-175 (229)
103 1h6t_A Internalin B; cell adhe 99.8 1.6E-18 5.3E-23 180.1 14.6 190 556-781 25-214 (291)
104 2v9t_B SLIT homolog 2 protein 99.8 2.1E-18 7.2E-23 171.0 14.9 151 631-804 15-165 (220)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 2.6E-18 8.8E-23 170.4 14.8 135 630-783 35-169 (220)
106 1h6t_A Internalin B; cell adhe 99.8 1.5E-18 5.2E-23 180.1 13.0 188 531-758 28-215 (291)
107 3e6j_A Variable lymphocyte rec 99.8 6.2E-18 2.1E-22 168.9 15.5 154 631-808 23-176 (229)
108 2xot_A Amphoterin-induced prot 99.8 2.3E-18 8E-23 185.0 13.2 177 582-781 21-203 (361)
109 2xot_A Amphoterin-induced prot 99.7 6E-18 2.1E-22 181.8 14.6 181 557-757 20-203 (361)
110 1m9s_A Internalin B; cell inva 99.7 3.7E-18 1.3E-22 194.3 13.4 126 554-690 42-167 (605)
111 1m9s_A Internalin B; cell inva 99.7 7.4E-18 2.5E-22 191.8 15.7 186 511-734 26-212 (605)
112 2v9t_B SLIT homolog 2 protein 99.7 1.3E-17 4.5E-22 165.3 14.8 153 582-781 14-166 (220)
113 4ezg_A Putative uncharacterize 99.7 1.3E-17 4.3E-22 162.6 13.1 153 626-805 43-195 (197)
114 1dce_A Protein (RAB geranylger 99.7 1.2E-20 4.1E-25 213.5 -10.3 202 554-809 348-551 (567)
115 1dce_A Protein (RAB geranylger 99.7 2.2E-20 7.4E-25 211.4 -9.9 187 601-830 347-549 (567)
116 1xeu_A Internalin C; cellular 99.7 1.2E-17 4.2E-22 170.4 10.2 169 578-781 18-186 (263)
117 1w8a_A SLIT protein; signaling 99.7 1.3E-17 4.5E-22 161.4 9.8 130 630-782 11-141 (192)
118 4b8c_D Glucose-repressible alc 99.7 3.2E-18 1.1E-22 200.0 6.3 185 594-808 215-408 (727)
119 4ezg_A Putative uncharacterize 99.7 3.7E-17 1.3E-21 159.2 11.6 155 576-781 41-195 (197)
120 1xeu_A Internalin C; cellular 99.7 8.6E-18 3E-22 171.5 6.2 170 554-758 18-187 (263)
121 4b8c_D Glucose-repressible alc 99.7 7.1E-18 2.4E-22 197.1 4.6 192 560-781 206-405 (727)
122 3sb4_A Hypothetical leucine ri 99.7 5E-17 1.7E-21 172.4 8.9 96 338-436 227-323 (329)
123 1w8a_A SLIT protein; signaling 99.7 1.9E-16 6.5E-21 153.3 10.7 132 655-808 11-143 (192)
124 3sb4_A Hypothetical leucine ri 99.6 2.6E-16 8.8E-21 166.9 9.7 220 554-798 100-328 (329)
125 2ell_A Acidic leucine-rich nuc 99.6 1.3E-15 4.5E-20 144.1 11.0 133 652-805 24-161 (168)
126 2ell_A Acidic leucine-rich nuc 99.6 1.3E-15 4.6E-20 144.1 10.6 137 627-786 24-165 (168)
127 2je0_A Acidic leucine-rich nuc 99.6 1E-15 3.4E-20 141.7 9.4 129 651-800 16-149 (149)
128 2wfh_A SLIT homolog 2 protein 99.6 5E-15 1.7E-19 143.1 13.6 110 676-805 31-140 (193)
129 2o6r_A Variable lymphocyte rec 99.6 7.1E-15 2.4E-19 140.3 12.8 132 655-808 10-141 (177)
130 2je0_A Acidic leucine-rich nuc 99.6 4.6E-15 1.6E-19 137.2 10.1 129 554-685 16-149 (149)
131 2wfh_A SLIT homolog 2 protein 99.6 1.8E-14 6.1E-19 139.2 12.5 127 631-781 14-140 (193)
132 2o6r_A Variable lymphocyte rec 99.6 2E-14 6.8E-19 137.2 12.5 132 630-784 10-141 (177)
133 1ds9_A Outer arm dynein; leuci 99.5 2.3E-16 7.8E-21 153.7 -4.2 151 627-804 18-185 (198)
134 1a9n_A U2A', U2A'; complex (nu 99.5 4E-14 1.4E-18 134.9 9.8 82 722-805 67-154 (176)
135 1ds9_A Outer arm dynein; leuci 99.5 9.9E-16 3.4E-20 149.2 -3.1 133 622-781 43-186 (198)
136 1a9n_A U2A', U2A'; complex (nu 99.5 7.5E-14 2.6E-18 132.9 9.7 135 622-781 14-154 (176)
137 4fdw_A Leucine rich hypothetic 99.5 1.3E-12 4.4E-17 141.2 19.8 219 556-803 158-382 (401)
138 3g39_A Variable lymphocyte rec 99.5 2E-13 6.9E-18 128.8 11.2 109 678-808 11-119 (170)
139 4fdw_A Leucine rich hypothetic 99.5 3.3E-12 1.1E-16 137.9 21.6 266 105-423 112-383 (401)
140 4fs7_A Uncharacterized protein 99.4 5.4E-12 1.9E-16 137.1 21.0 66 351-419 61-126 (394)
141 2r9u_A Variable lymphocyte rec 99.4 6E-13 2.1E-17 125.9 11.4 107 679-807 15-121 (174)
142 4fs7_A Uncharacterized protein 99.4 8.4E-12 2.9E-16 135.6 21.1 312 100-468 65-376 (394)
143 3g39_A Variable lymphocyte rec 99.4 2.5E-12 8.6E-17 121.3 11.3 106 655-782 12-117 (170)
144 3un9_A NLR family member X1; l 99.4 4E-14 1.4E-18 151.4 -1.4 158 628-804 102-283 (372)
145 2r9u_A Variable lymphocyte rec 99.3 5.3E-12 1.8E-16 119.4 11.2 104 656-781 16-119 (174)
146 3un9_A NLR family member X1; l 99.3 5E-13 1.7E-17 142.9 0.8 166 626-805 71-253 (372)
147 2ifg_A High affinity nerve gro 99.2 4.2E-11 1.4E-15 127.8 11.3 82 722-804 34-116 (347)
148 4gt6_A Cell surface protein; l 99.2 8.8E-10 3E-14 119.6 21.7 108 356-467 58-169 (394)
149 4gt6_A Cell surface protein; l 99.1 4.3E-09 1.5E-13 114.1 23.9 304 127-468 59-367 (394)
150 2ifg_A High affinity nerve gro 99.1 1.3E-10 4.4E-15 124.0 10.8 110 63-194 8-118 (347)
151 2ra8_A Uncharacterized protein 98.9 1.1E-09 3.9E-14 115.7 5.5 83 718-802 251-341 (362)
152 2ra8_A Uncharacterized protein 98.8 1.5E-09 5E-14 114.8 5.0 203 555-778 107-341 (362)
153 4h09_A Hypothetical leucine ri 98.8 2.7E-07 9.2E-12 99.4 22.8 82 355-442 40-121 (379)
154 4h09_A Hypothetical leucine ri 98.8 6.3E-07 2.2E-11 96.5 23.4 118 356-478 235-352 (379)
155 1io0_A Tropomodulin; LRR prote 98.4 6E-08 2.1E-12 92.4 2.8 83 722-804 68-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 5.1E-08 1.8E-12 92.8 1.2 90 576-665 62-164 (185)
157 3rw6_A Nuclear RNA export fact 98.4 7.9E-08 2.7E-12 96.0 2.0 78 718-797 169-257 (267)
158 3rw6_A Nuclear RNA export fact 98.3 2.6E-07 8.8E-12 92.3 3.9 84 724-809 148-238 (267)
159 3e4g_A ATP synthase subunit S, 97.9 5.5E-06 1.9E-10 76.4 3.8 86 235-320 61-151 (176)
160 3e4g_A ATP synthase subunit S, 97.9 4E-06 1.4E-10 77.3 2.0 83 720-802 62-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.4 4.2E-05 1.4E-09 71.9 1.5 87 527-613 41-136 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00028 9.5E-09 66.3 2.0 70 197-268 62-135 (197)
163 3rfe_A Platelet glycoprotein I 96.7 0.0024 8.2E-08 56.0 6.1 57 722-780 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.6 0.003 1E-07 55.4 6.1 57 746-804 11-68 (130)
165 2lz0_A Uncharacterized protein 42.5 28 0.00097 28.0 4.4 45 567-612 8-52 (100)
166 2lz0_A Uncharacterized protein 40.7 46 0.0016 26.8 5.5 41 377-419 12-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-93 Score=850.42 Aligned_cols=710 Identities=30% Similarity=0.445 Sum_probs=555.3
Q ss_pred CCCcHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCccccceecCCCCCCEEEEEcCCCCCCCCCcccccc---ccccccCC
Q 003200 29 VGCLETERRALLRFKQDLQDPSNRLASWTGDGDCCTWAGVACGNVTGHILELNLRNPSTSNPRSMLVGK---VNPALLDL 105 (840)
Q Consensus 29 ~~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~---~~~~~~~l 105 (840)
+.+.++|++||++||+++.||. .+++|+.+++||.|+||+|+ +|||++|+|++. .+.|. +++++.++
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~-------~l~g~~~~l~~~l~~L 76 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSK-------PLNVGFSAVSSSLLSL 76 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTS-------CCCEEHHHHHHHTTTC
T ss_pred ccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCC-------CcCCccCccChhHhcc
Confidence 4557899999999999999988 89999888899999999998 689999999996 77888 99999999
Q ss_pred CCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCC--CCCCCCCCCeEeccCccccCCCcccc-cCCCCCC
Q 003200 106 KHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPP--QLGNLSDLQFLDLSSNYLYVDNVWWL-SGLSFLE 182 (840)
Q Consensus 106 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~--~l~~l~~L~~L~Ls~n~~~~~~~~~~-~~l~~L~ 182 (840)
++|+.++++.+.+. .+|..++.+++|++|+|++|.+.+.+|. .++++++|++|++++|.+....+..+ .++++|+
T Consensus 77 ~~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 154 (768)
T 3rgz_A 77 TGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154 (768)
T ss_dssp TTCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCS
T ss_pred CcccccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCC
Confidence 99999999999875 4678999999999999999999999998 99999999999999999876666554 8999999
Q ss_pred EEEccCcCCCCCcchh-hhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCC
Q 003200 183 HLDLRSVNLSKASDWL-MATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPL 261 (840)
Q Consensus 183 ~L~Ls~n~l~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 261 (840)
+|++++|++++..... ..+.++++|++|++++|.+.+..+ +..+++|++|++++|.+.+.+|. ++++++|
T Consensus 155 ~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L 225 (768)
T 3rgz_A 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--------VSRCVNLEFLDVSSNNFSTGIPF-LGDCSAL 225 (768)
T ss_dssp EEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--------CTTCTTCCEEECCSSCCCSCCCB-CTTCCSC
T ss_pred EEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--------cccCCcCCEEECcCCcCCCCCcc-cccCCCC
Confidence 9999999998754322 237889999999999999987643 47899999999999999988887 9999999
Q ss_pred cEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhh-ccCCCCCCC
Q 003200 262 ECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIF-SGCVSNGLE 340 (840)
Q Consensus 262 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~~~L~ 340 (840)
++|++++|.+++.+|..+..+++|++|++++ +.+.+.+|.. .+++|++|++++|.+.+.+|..+... + +|+
T Consensus 226 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~-----~L~ 297 (768)
T 3rgz_A 226 QHLDISGNKLSGDFSRAISTCTELKLLNISS-NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD-----TLT 297 (768)
T ss_dssp CEEECCSSCCCSCHHHHTTTCSSCCEEECCS-SCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCT-----TCS
T ss_pred CEEECcCCcCCCcccHHHhcCCCCCEEECCC-CcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcC-----cCC
Confidence 9999999999999999999999999999999 5777777664 66777777777776666555544332 2 566
Q ss_pred EEEccCCcccccCccccCCCCCCCEEEccCCccccccccc-ccCCCCCCEEEccCCccccccChhhhccCC-CCCEEEcc
Q 003200 341 SLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPES-FGQLSTLRELQIYDNKLNGTLSEFHFANLT-KLSWFRVG 418 (840)
Q Consensus 341 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~-~L~~L~L~ 418 (840)
+|++++|++++.+|..++.+++|++|++++|.+.+.+|.. +.++++|++|++++|.+.+.+|. .+.+++ +|++|+++
T Consensus 298 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~~L~~L~Ls 376 (768)
T 3rgz_A 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE-SLTNLSASLLTLDLS 376 (768)
T ss_dssp EEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT-THHHHTTTCSEEECC
T ss_pred EEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH-HHHhhhcCCcEEEcc
Confidence 6666666666666666666666666666666665544443 55566666666666666555554 344444 56666666
Q ss_pred CcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccc
Q 003200 419 GNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGK 498 (840)
Q Consensus 419 ~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 498 (840)
+|.+.+.....+.. ..+++|++|++++|++++..|..+ ..+++|++|++++|.+.+.
T Consensus 377 ~N~l~~~~~~~~~~----------------------~~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~ 433 (768)
T 3rgz_A 377 SNNFSGPILPNLCQ----------------------NPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGT 433 (768)
T ss_dssp SSEEEEECCTTTTC----------------------STTCCCCEEECCSSEEEEECCGGG-GGCTTCCEEECCSSEEESC
T ss_pred CCCcCCCcChhhhh----------------------cccCCccEEECCCCccccccCHHH-hcCCCCCEEECcCCcccCc
Confidence 66555444333332 004455555555555554444433 3344455555555544443
Q ss_pred ccc-ccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccC
Q 003200 499 ISN-LTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMS 577 (840)
Q Consensus 499 ~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 577 (840)
++. +...+ +|++|++++|.+.+.+|..+ ..+++|++|++++|++++.+|..+.+
T Consensus 434 ~p~~l~~l~---------------------~L~~L~L~~n~l~~~~p~~~----~~l~~L~~L~L~~N~l~~~~p~~l~~ 488 (768)
T 3rgz_A 434 IPSSLGSLS---------------------KLRDLKLWLNMLEGEIPQEL----MYVKTLETLILDFNDLTGEIPSGLSN 488 (768)
T ss_dssp CCGGGGGCT---------------------TCCEEECCSSCCCSCCCGGG----GGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ccHHHhcCC---------------------CCCEEECCCCcccCcCCHHH----cCCCCceEEEecCCcccCcCCHHHhc
Confidence 332 22222 33444444444444444332 33678888888888888888888888
Q ss_pred CCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEE
Q 003200 578 YQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVL 657 (840)
Q Consensus 578 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L 657 (840)
+++|++|++++|++++.+|..++.+++|++|++++|++++.+|..+.++++|++|++++|+++|.+|.+++ ....+..+
T Consensus 489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~~~~~~~~ 567 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF-KQSGKIAA 567 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG-TTTTCBCC
T ss_pred CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh-cccchhhh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888776 34444333
Q ss_pred EccC---------C-------------cccccCCccccCccccceeecccccccccCCccccccccCcccccccCccccc
Q 003200 658 ILRS---------N-------------QFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYR 715 (840)
Q Consensus 658 ~l~~---------n-------------~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~ 715 (840)
++.. + .+.+..+..+..++.++.++++.|.+.|.+|..+..+++|
T Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L------------- 634 (768)
T 3rgz_A 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM------------- 634 (768)
T ss_dssp STTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC-------------
T ss_pred hccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc-------------
Confidence 3222 1 2445666777778888889999999999999999888877
Q ss_pred ccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCe
Q 003200 716 EILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNH 795 (840)
Q Consensus 716 ~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 795 (840)
+.|||++|+++|.+|..++++++|+.|+|++|+++|.+|..|+++++|++|||++|+++|.+|+.+..+++|++
T Consensus 635 ------~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 635 ------MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708 (768)
T ss_dssp ------CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred ------cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCcccccCCCCCcCCCcCcCCCCCC-CCCCCCCCCCCCC
Q 003200 796 LNLSNNNLTGKIPLSTQLQSFNASSFAGN-DLCGAPLPKNCTM 837 (840)
Q Consensus 796 L~ls~N~l~g~ip~~~~~~~~~~~~~~gn-~lcg~~~~~~c~~ 837 (840)
||+++|+++|.||+.++|++|+..+|.|| +|||.|+. +|..
T Consensus 709 L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~ 750 (768)
T 3rgz_A 709 IDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDP 750 (768)
T ss_dssp EECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCS
T ss_pred EECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCC
Confidence 99999999999999999999999999999 99999997 8974
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.9e-71 Score=660.40 Aligned_cols=618 Identities=28% Similarity=0.392 Sum_probs=513.0
Q ss_pred ccccccCCCCCCEEeCCCCCCCCCCccc--cccCCCCCcEEeccCCcccCCCCCCC-CCCCCCCeEeccCccccCCCccc
Q 003200 98 VNPALLDLKHLSYLDLSSNDFQGVQIPR--FIGSMRNLRYLNLSDTQFVGMIPPQL-GNLSDLQFLDLSSNYLYVDNVWW 174 (840)
Q Consensus 98 ~~~~~~~l~~L~~L~Ls~n~~~~~~~p~--~l~~l~~L~~L~Ls~n~i~~~~p~~l-~~l~~L~~L~Ls~n~~~~~~~~~ 174 (840)
+++.++++++|++|||++|.+.+. +|. .++++++|++|+|++|.+.+.+|..+ .++++|++|++++|.+....+..
T Consensus 92 l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 170 (768)
T 3rgz_A 92 SVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170 (768)
T ss_dssp CCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHH
T ss_pred CchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChh
Confidence 457899999999999999999874 787 89999999999999999999988876 89999999999999998777766
Q ss_pred ---ccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCC
Q 003200 175 ---LSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSI 251 (840)
Q Consensus 175 ---~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~ 251 (840)
+.++++|++|++++|.+.+... +..+++|++|++++|.+.+.++ . ++.+++|++|++++|.+++.+
T Consensus 171 ~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~------~-l~~l~~L~~L~Ls~n~l~~~~ 239 (768)
T 3rgz_A 171 WVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIP------F-LGDCSALQHLDISGNKLSGDF 239 (768)
T ss_dssp HHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCC------B-CTTCCSCCEEECCSSCCCSCH
T ss_pred hhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCCc------c-cccCCCCCEEECcCCcCCCcc
Confidence 8999999999999999987543 3789999999999999988654 4 899999999999999999999
Q ss_pred cccccCCCCCcEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCC-CCCcEEEcCCCcccccchHHHHh
Q 003200 252 PDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANF-CNLKSVNLRGVHLSQEISEILDI 330 (840)
Q Consensus 252 p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~ 330 (840)
|..+.++++|++|++++|.+++.+|.. .+++|++|++++ +.+.+.+|..+... ++|++|++++|.+.+.+|..+..
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~-n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 316 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAE-NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCS-SEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG
T ss_pred cHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcC-CccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc
Confidence 999999999999999999999888765 899999999999 78899999998875 99999999999999999999988
Q ss_pred hccCCCCCCCEEEccCCcccccCccc-cCCCCCCCEEEccCCcccccccccccCCC-CCCEEEccCCccccccChhhhcc
Q 003200 331 FSGCVSNGLESLDMRSSSIYGHLTDQ-LGQFRNLVTLNLANNSIVGLIPESFGQLS-TLRELQIYDNKLNGTLSEFHFAN 408 (840)
Q Consensus 331 ~~~~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~i~~~~~~~ 408 (840)
++ +|++|++++|.+.+.+|.. +..+++|++|++++|++++.+|..+.+++ +|++|++++|.+.+.++. .+..
T Consensus 317 l~-----~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~-~~~~ 390 (768)
T 3rgz_A 317 CS-----LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP-NLCQ 390 (768)
T ss_dssp CT-----TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT-TTTC
T ss_pred CC-----CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh-hhhh
Confidence 88 9999999999999888876 99999999999999999999999999987 999999999999988776 3444
Q ss_pred --CCCCCEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCcc
Q 003200 409 --LTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLK 486 (840)
Q Consensus 409 --l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~ 486 (840)
+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++++..|..+ ..+++
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~-- 467 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-MYVKT-- 467 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-GGCTT--
T ss_pred cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHH-cCCCC--
Confidence 7889999999998887666656566666666666666665566666666666666666666555544433 22333
Q ss_pred EEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCc
Q 003200 487 FLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNY 566 (840)
Q Consensus 487 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 566 (840)
|++|++++|++++.+|.. +..+++|++|++++|+
T Consensus 468 ------------------------------------------L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~L~~N~ 501 (768)
T 3rgz_A 468 ------------------------------------------LETLILDFNDLTGEIPSG----LSNCTNLNWISLSNNR 501 (768)
T ss_dssp ------------------------------------------CCEEECCSSCCCSCCCGG----GGGCTTCCEEECCSSC
T ss_pred ------------------------------------------ceEEEecCCcccCcCCHH----HhcCCCCCEEEccCCc
Confidence 333333334444333332 2336777777777777
Q ss_pred CccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCC---------
Q 003200 567 LQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDEN--------- 637 (840)
Q Consensus 567 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N--------- 637 (840)
+++.+|..++.+++|++|++++|++++.+|..++.+++|++|++++|+++|.+|..+..+..+..+++..+
T Consensus 502 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (768)
T 3rgz_A 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECC
T ss_pred cCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccc
Confidence 77777777777777777777777777777777777777777777777777777777766665555444331
Q ss_pred -------------cccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcc
Q 003200 638 -------------EFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVT 704 (840)
Q Consensus 638 -------------~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 704 (840)
.+.+..+..+. .++.+..++++.|.+.|.+|..+..+++|+.||+++|+++|.+|..+++++.|
T Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L-- 658 (768)
T 3rgz_A 582 GMKKECHGAGNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL-- 658 (768)
T ss_dssp SCCTTCCSSEEEEECTTCCGGGGG-GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC--
T ss_pred cccccccccccccccccccchhhh-ccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC--
Confidence 23445555555 57778888999999999999999999999999999999999999999998888
Q ss_pred cccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCC
Q 003200 705 VKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIP 784 (840)
Q Consensus 705 l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 784 (840)
+.|+|++|+++|.+|..++++++|++|||++|+++|.+|..++++++|++||+++|+++|.||
T Consensus 659 -----------------~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 659 -----------------FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp -----------------CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred -----------------CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCeEeccCCc-cccc
Q 003200 785 QSMSSLTFLNHLNLSNNN-LTGK 806 (840)
Q Consensus 785 ~~l~~l~~L~~L~ls~N~-l~g~ 806 (840)
+. ..+..+....+.+|+ +.|.
T Consensus 722 ~~-~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 722 EM-GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp SS-SSGGGSCGGGGCSCTEEEST
T ss_pred Cc-hhhccCCHHHhcCCchhcCC
Confidence 76 345556667778886 7774
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.8e-60 Score=556.06 Aligned_cols=587 Identities=19% Similarity=0.202 Sum_probs=380.4
Q ss_pred CCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEE
Q 003200 106 KHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLD 185 (840)
Q Consensus 106 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 185 (840)
+++++|+|++|.++++ .+..++++++|++|++++|.+++..|.+|+++++|++|++++|.+.......|+++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 4566666666666543 334455666666666666666655555566666666666666655544444455555555555
Q ss_pred ccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcEEE
Q 003200 186 LRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLN 265 (840)
Q Consensus 186 Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 265 (840)
+++|++ .++++ ..++++++|++|++++|.+++..|..++++++|++|+
T Consensus 104 L~~n~l--------------------------~~~~~------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 151 (680)
T 1ziw_A 104 LMSNSI--------------------------QKIKN------NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL 151 (680)
T ss_dssp CCSSCC--------------------------CCCCS------CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE
T ss_pred CCCCcc--------------------------CccCh------hHccccCCCCEEECCCCcccccCchhhcccccCCEEE
Confidence 555544 44333 4566666777777777766666666666677777777
Q ss_pred cccCccccccchhhh--cCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEE
Q 003200 266 LRNNSLQGTISDAIG--NLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLD 343 (840)
Q Consensus 266 L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 343 (840)
+++|.+++..+..+. .+++|++|++++ +.+.+..|..+..+++|+.+++.++.+.......+.... ..++|+.|+
T Consensus 152 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l--~~~~L~~L~ 228 (680)
T 1ziw_A 152 LSNNKIQALKSEELDIFANSSLKKLELSS-NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL--ANTSIRNLS 228 (680)
T ss_dssp CCSSCCCCBCHHHHGGGTTCEESEEECTT-CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH--TTSCCCEEE
T ss_pred ccCCcccccCHHHhhccccccccEEECCC-CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh--hhccccEEE
Confidence 777766665555543 346677777776 466666666677777777777777766543333222111 113788888
Q ss_pred ccCCcccccCccccCCCCC--CCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcc
Q 003200 344 MRSSSIYGHLTDQLGQFRN--LVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQ 421 (840)
Q Consensus 344 l~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~ 421 (840)
+++|.+.+..|.++..++. |++|++++|.+.+..|..|+.+++|++|++++|.+.+..+. .|.++++|+++++++|.
T Consensus 229 L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~~~ 307 (680)
T 1ziw_A 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH-SLHGLFNVRYLNLKRSF 307 (680)
T ss_dssp CTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT-TTTTCTTCCEEECTTCB
T ss_pred ccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh-hhcCCCCccEEeccchh
Confidence 8888888777777776644 88888888888877777788888888888888887754443 67778888888877654
Q ss_pred cceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCccccccccc
Q 003200 422 LTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISN 501 (840)
Q Consensus 422 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 501 (840)
....... ..+.......+..+++|++|++++|++++..+..| ..+++|++|++++|.+......
T Consensus 308 ~~~~~~~---------------~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~l~ 371 (680)
T 1ziw_A 308 TKQSISL---------------ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF-TGLINLKYLSLSNSFTSLRTLT 371 (680)
T ss_dssp CCC---------------------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT-TTCTTCCEEECTTCBSCCCEEC
T ss_pred hhccccc---------------ccccccChhhcccCCCCCEEECCCCccCCCChhHh-ccccCCcEEECCCCchhhhhcc
Confidence 3321100 00000111245566777777777777776655443 4455666666665544311000
Q ss_pred ccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCc
Q 003200 502 LTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNL 581 (840)
Q Consensus 502 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 581 (840)
. ..+. -...++|+.|++++|++++..|.+|..+++|
T Consensus 372 ~------------------------------------------~~f~--~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 407 (680)
T 1ziw_A 372 N------------------------------------------ETFV--SLAHSPLHILNLTKNKISKIESDAFSWLGHL 407 (680)
T ss_dssp T------------------------------------------TTTG--GGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred h------------------------------------------hhhc--ccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence 0 0000 0012467777777777776667777777777
Q ss_pred CEEEccCCcCCCCCC-cccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCccc--ccCChhhhhccCCccEEE
Q 003200 582 KVLKLSNNKFSGNLP-NSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFV--GNIPTWFGERFSRMLVLI 658 (840)
Q Consensus 582 ~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~--~~~p~~~~~~l~~L~~L~ 658 (840)
++|++++|++++.+| ..|..+++|++|++++|++.+..+..+..+++|+.|++++|.+. +.+|..+. .+++|++|+
T Consensus 408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~ 486 (680)
T 1ziw_A 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILD 486 (680)
T ss_dssp CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEE
T ss_pred CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEE
Confidence 777777777766544 56677777777777777777666777777777777777777765 45666665 677777777
Q ss_pred ccCCcccccCCccccCccccceeecccccccccCCcc--------ccccccCcccccccCcccccccCCcceEEeCCCCc
Q 003200 659 LRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKC--------ISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNN 730 (840)
Q Consensus 659 l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--------~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~ 730 (840)
+++|++++..|..+..+++|+.|++++|++++..+.. +.++ ++|+.|+|++|+
T Consensus 487 Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l-------------------~~L~~L~L~~N~ 547 (680)
T 1ziw_A 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL-------------------SHLHILNLESNG 547 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTC-------------------TTCCEEECCSSC
T ss_pred CCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCC-------------------CCCCEEECCCCC
Confidence 7777777777777777888888888888777432221 3333 344888888888
Q ss_pred ccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCcccc-CCCCCCeEeccCCcccccCCC
Q 003200 731 FSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMS-SLTFLNHLNLSNNNLTGKIPL 809 (840)
Q Consensus 731 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~g~ip~ 809 (840)
++...+..|.++++|+.|+|++|++++..+..|..+++|++|++++|++++..|..+. .+++|++|++++|++...-+.
T Consensus 548 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 548 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 8844444578888888888888888866666778888888888888888877666666 678888888888888776553
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.8e-58 Score=544.81 Aligned_cols=583 Identities=21% Similarity=0.200 Sum_probs=392.1
Q ss_pred CCCEEEEEcCCCCCCCCCccccccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCC
Q 003200 74 TGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGN 153 (840)
Q Consensus 74 ~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~ 153 (840)
..++++|+++++ .+.+..+..|.++++|++|+|++|.+.+. .|..++++++|++|++++|.+++..+.+|++
T Consensus 24 ~~~l~~L~Ls~n-------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 24 PTNITVLNLTHN-------QLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp CTTCSEEECCSS-------CCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCcEEECCCC-------CCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence 357999999997 66666667899999999999999999975 6888999999999999999999766668999
Q ss_pred CCCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccC
Q 003200 154 LSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQN 233 (840)
Q Consensus 154 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~ 233 (840)
+++|++|++++|.+....+..|.++++|++|++++|.+++... ..+..
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------------------------------~~~~~ 143 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL--------------------------------GTQVQ 143 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC--------------------------------CSSSC
T ss_pred CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc--------------------------------hhhcc
Confidence 9999999999999988888888989999998888888766421 33444
Q ss_pred CCCCCEEECcCCCCCCCCccccc--CCCCCcEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccc---cCCC
Q 003200 234 LTSLKHLDLDSNHFNSSIPDWLY--KFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSM---ANFC 308 (840)
Q Consensus 234 l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l---~~l~ 308 (840)
+++|++|++++|.+++..+..+. .+++|++|++++|.+++..|..+..+++|+.|++.+ +.+.+.....+ ...+
T Consensus 144 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~~~l~~~ 222 (680)
T 1ziw_A 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN-VQLGPSLTEKLCLELANT 222 (680)
T ss_dssp CTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTT-CCCHHHHHHHHHHHHTTS
T ss_pred cccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccc-cccChhhHHHHHHHhhhc
Confidence 55555555555555544444332 334555555555555555555555555555555554 22222111111 1235
Q ss_pred CCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCC
Q 003200 309 NLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLR 388 (840)
Q Consensus 309 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 388 (840)
+|+.|++++|.+.+..+..+..+. .++|++|++++|++.+..+..++.+++|++|++++|.+.+..|..|.++++|+
T Consensus 223 ~L~~L~L~~n~l~~~~~~~~~~l~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 299 (680)
T 1ziw_A 223 SIRNLSLSNSQLSTTSNTTFLGLK---WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTGGGG---GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCC
T ss_pred cccEEEccCCcccccChhHhhccC---cCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCcc
Confidence 677777777777666666555443 12588888888888888888889999999999999999988888899999999
Q ss_pred EEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCC
Q 003200 389 ELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNS 468 (840)
Q Consensus 389 ~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n 468 (840)
+|++++|...+.++.. .++ ......+..+++|+.|++++|.+.+..+.++..+++|++|++++|
T Consensus 300 ~L~L~~~~~~~~~~~~---~lp-------------~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 300 YLNLKRSFTKQSISLA---SLP-------------KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp EEECTTCBCCC---------CC-------------EECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred EEeccchhhhcccccc---ccc-------------ccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence 9999887655432210 011 111123334455555555555555566677777888888888887
Q ss_pred CCCCC--cchHHHh-ccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCc
Q 003200 469 RISDI--FPIRFLK-SASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISH 545 (840)
Q Consensus 469 ~i~~~--~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~ 545 (840)
.+... ....|.. ..++|+.|++++|++. +..+.
T Consensus 364 ~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~--------------------------------------------~~~~~ 399 (680)
T 1ziw_A 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKIS--------------------------------------------KIESD 399 (680)
T ss_dssp BSCCCEECTTTTGGGTTSCCCEEECTTSCCC--------------------------------------------EECTT
T ss_pred chhhhhcchhhhcccccCcCceEECCCCCCC--------------------------------------------eEChh
Confidence 65432 1111110 0123344444333333 22221
Q ss_pred hhhhccCCCCcccEEeccCCcCccccC-ccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCc--CCCCcc
Q 003200 546 FLCYRVNETKSLEGLKLTDNYLQGEIP-DCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLS--GKIPIS 622 (840)
Q Consensus 546 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~p~~ 622 (840)
. +..+++|++|++++|.+++.+| ..|.++++|++|++++|++++..+..|..+++|++|++++|.+. +..|..
T Consensus 400 ~----~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~ 475 (680)
T 1ziw_A 400 A----FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475 (680)
T ss_dssp T----TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCT
T ss_pred h----hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcc
Confidence 1 2234556666666666554443 45556666666666666666555556666666666666666554 345556
Q ss_pred cccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccC--------CccccCccccceeecccccccccCCc
Q 003200 623 LKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPL--------PKTICDLAFLQILDLADNNLSGAIPK 694 (840)
Q Consensus 623 l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~--------p~~l~~l~~L~~L~Ls~N~l~~~~p~ 694 (840)
+.++++|++|++++|++++..|..+. .+++|++|++++|++++.. +..+.++++|+.|++++|+++...+.
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~i~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~ 554 (680)
T 1ziw_A 476 FQPLRNLTILDLSNNNIANINDDMLE-GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cccCCCCCEEECCCCCCCcCChhhhc-cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHH
Confidence 66666666666666666644443343 5666666666666665432 23478889999999999999843344
Q ss_pred cccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchh-ccCCCCeEe
Q 003200 695 CISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIG-TMRALESVD 773 (840)
Q Consensus 695 ~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ 773 (840)
.+.++++| +.|++++|++++..+..|.++++|+.|++++|++++..|..++ .+++|+.|+
T Consensus 555 ~~~~l~~L-------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~ 615 (680)
T 1ziw_A 555 VFKDLFEL-------------------KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD 615 (680)
T ss_dssp TTTTCTTC-------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEE
T ss_pred HcccccCc-------------------ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEE
Confidence 67777777 8999999999977777788999999999999999988888887 799999999
Q ss_pred CCCCcccccCC
Q 003200 774 FSVNQLSGEIP 784 (840)
Q Consensus 774 Ls~N~l~~~~p 784 (840)
+++|++...-+
T Consensus 616 l~~N~~~c~c~ 626 (680)
T 1ziw_A 616 MRFNPFDCTCE 626 (680)
T ss_dssp CTTCCCCBCCC
T ss_pred ccCCCcccCCc
Confidence 99999987544
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.9e-55 Score=506.83 Aligned_cols=530 Identities=19% Similarity=0.228 Sum_probs=311.2
Q ss_pred ccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccc
Q 003200 96 GKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWL 175 (840)
Q Consensus 96 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~ 175 (840)
..+|..+.. ++++|||++|.++++ .|..++.+++|++|+|++|++.+..|.+|+++++|++|++++|.+....+..|
T Consensus 25 ~~iP~~l~~--~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 101 (606)
T 3t6q_A 25 NEIPGTLPN--STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL 101 (606)
T ss_dssp SSCCTTSCT--TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT
T ss_pred ccCcCCCCC--cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhh
Confidence 355555543 688999999988864 57788888999999999998888888888999999999999988887777788
Q ss_pred cCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccc
Q 003200 176 SGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWL 255 (840)
Q Consensus 176 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l 255 (840)
+++++|++|++++|+++.... ..++.+++|++|++++|.+.+.+. ..+..+++|++|++++|.+.+..|..+
T Consensus 102 ~~l~~L~~L~L~~n~i~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~ 173 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSIDF--IPLHNQKTLESLYLGSNHISSIKL------PKGFPTEKLKVLDFQNNAIHYLSKEDM 173 (606)
T ss_dssp SSCTTCCEEECTTSCCSCGGG--SCCTTCTTCCEEECCSSCCCCCCC------CTTCCCTTCCEEECCSSCCCEECHHHH
T ss_pred cccccccEeeccccCcccCCc--chhccCCcccEEECCCCcccccCc------ccccCCcccCEEEcccCcccccChhhh
Confidence 888888888888888776532 234556666666666666655432 222335566666666666555555555
Q ss_pred cCCCCCc--EEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhcc
Q 003200 256 YKFSPLE--CLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSG 333 (840)
Q Consensus 256 ~~l~~L~--~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 333 (840)
+.+++|+ +|++++|.+++..|..+.. .+|+.|++++ |. ..+..+..+..
T Consensus 174 ~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~-------------------------~~---~~~~~~~~l~~ 224 (606)
T 3t6q_A 174 SSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGG-------------------------TQ---NLLVIFKGLKN 224 (606)
T ss_dssp HTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTT-------------------------CS---CHHHHHHHTTT
T ss_pred hhhcccceeEEecCCCccCccChhHhhh-ccccccccCC-------------------------ch---hHHHHhhhccc
Confidence 5555555 5555555555444433322 3455555544 43 22222222220
Q ss_pred CCCCCCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCC--CCCEEEccCCccccccChhhhccCCC
Q 003200 334 CVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLS--TLRELQIYDNKLNGTLSEFHFANLTK 411 (840)
Q Consensus 334 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~i~~~~~~~l~~ 411 (840)
..++.+.+.. +..+....+. +..+.++. +|+.|++++|.+. .++...|.++++
T Consensus 225 ---~~l~~l~~~~-------------~~~~~~~~i~--------~~~~~~l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~ 279 (606)
T 3t6q_A 225 ---STIQSLWLGT-------------FEDMDDEDIS--------PAVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSG 279 (606)
T ss_dssp ---CEEEEEECCC-------------CTTSCCCCCC--------GGGGGGGGGSEEEEEECTTCCCS-SCCTTTTTTCTT
T ss_pred ---cchhheechh-------------hccccccccC--------hhHhchhhcCceeEEEeecCccC-ccCHHHhccccC
Confidence 0111121111 0111111111 11111111 3444444444443 222223444444
Q ss_pred CCEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEcc
Q 003200 412 LSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVG 491 (840)
Q Consensus 412 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~ 491 (840)
|++|++++|.++ .+|.++..+++|++|++++|++++..+..+ .
T Consensus 280 L~~L~l~~n~l~-------------------------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~-~----------- 322 (606)
T 3t6q_A 280 LQELDLTATHLS-------------------------ELPSGLVGLSTLKKLVLSANKFENLCQISA-S----------- 322 (606)
T ss_dssp CSEEECTTSCCS-------------------------CCCSSCCSCTTCCEEECTTCCCSBGGGGCG-G-----------
T ss_pred CCEEeccCCccC-------------------------CCChhhcccccCCEEECccCCcCcCchhhh-h-----------
Confidence 444444433332 223334445555555555555554433222 1
Q ss_pred CcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCcccc
Q 003200 492 LNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEI 571 (840)
Q Consensus 492 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 571 (840)
.+++|++|++++|.+.+.+
T Consensus 323 -------------------------------------------------------------~l~~L~~L~l~~n~~~~~~ 341 (606)
T 3t6q_A 323 -------------------------------------------------------------NFPSLTHLSIKGNTKRLEL 341 (606)
T ss_dssp -------------------------------------------------------------GCTTCSEEECCSCSSCCBC
T ss_pred -------------------------------------------------------------ccCcCCEEECCCCCccccc
Confidence 1234444444444444333
Q ss_pred Cc-cccCCCCcCEEEccCCcCCCCC--CcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhh
Q 003200 572 PD-CWMSYQNLKVLKLSNNKFSGNL--PNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFG 648 (840)
Q Consensus 572 ~~-~~~~l~~L~~L~Ls~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~ 648 (840)
|. .+..+++|++|++++|++++.. +..+..+++|++|++++|++.+..|..+..+++|++|++++|++.+..|....
T Consensus 342 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 421 (606)
T 3t6q_A 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421 (606)
T ss_dssp CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTT
T ss_pred chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhh
Confidence 22 2445555555555555555433 44555556666666666666555555666666666666666666655544423
Q ss_pred hccCCccEEEccCCcccccCCccccCccccceeecccccccccC---CccccccccCcccccccCcccccccCCcceEEe
Q 003200 649 ERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAI---PKCISNLTGMVTVKSFTGSVVYREILPLVSLLD 725 (840)
Q Consensus 649 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~ 725 (840)
..+++|++|++++|.+++..|..+..+++|+.|++++|++.+.. +..+..+++| +.|+
T Consensus 422 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L-------------------~~L~ 482 (606)
T 3t6q_A 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL-------------------EILV 482 (606)
T ss_dssp TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC-------------------CEEE
T ss_pred hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc-------------------cEEE
Confidence 35666666666666666666666667777777777777776521 2344554444 7777
Q ss_pred CCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccc
Q 003200 726 ISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTG 805 (840)
Q Consensus 726 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 805 (840)
+++|++++..|..++++++|+.|++++|++++.+|+.+.++++| +|++++|++++.+|..+..+++|++|++++|++++
T Consensus 483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred CCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 77777777777777778888888888888887777778888888 88888888887777777777788888888888777
Q ss_pred cCC
Q 003200 806 KIP 808 (840)
Q Consensus 806 ~ip 808 (840)
..+
T Consensus 562 ~c~ 564 (606)
T 3t6q_A 562 TCS 564 (606)
T ss_dssp SGG
T ss_pred cCC
Confidence 555
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.9e-53 Score=495.15 Aligned_cols=529 Identities=18% Similarity=0.223 Sum_probs=363.6
Q ss_pred CCEEEEEcCCCCCCCCCccccccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCC
Q 003200 75 GHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNL 154 (840)
Q Consensus 75 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l 154 (840)
..+++|+++++ .+.+..+.+|.++++|++|+|++|.+.++ .|..++.+++|++|++++|++++..|..|+++
T Consensus 33 ~~l~~L~Ls~n-------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 33 NSTECLEFSFN-------VLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp TTCCEEECTTC-------CCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred CcCcEEEccCC-------ccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhccc
Confidence 47899999997 67777788999999999999999999875 68889999999999999999999999999999
Q ss_pred CCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCC
Q 003200 155 SDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNL 234 (840)
Q Consensus 155 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l 234 (840)
++|++|++++|.+....+..|.++++|++|++++|++.+.+. ..+..+++|++|++++|.+++.++ ..++.+
T Consensus 105 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l 176 (606)
T 3t6q_A 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL--PKGFPTEKLKVLDFQNNAIHYLSK------EDMSSL 176 (606)
T ss_dssp TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCC--CTTCCCTTCCEEECCSSCCCEECH------HHHHTT
T ss_pred ccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCc--ccccCCcccCEEEcccCcccccCh------hhhhhh
Confidence 999999999999998888889999999999999999987632 123348999999999999998765 778999
Q ss_pred CCCC--EEECcCCCCCCCCcccccCCCCCcEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcE
Q 003200 235 TSLK--HLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKS 312 (840)
Q Consensus 235 ~~L~--~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~ 312 (840)
++|+ +|++++|.+.+..|..+.. ..|++|++++|. .++..+..+.+++...+... .+. .+..
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~-~~~-----------~~~~ 240 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLG-TFE-----------DMDD 240 (606)
T ss_dssp TTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECC-CCT-----------TSCC
T ss_pred cccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheech-hhc-----------cccc
Confidence 9999 9999999999877776654 689999999986 45566666766655554431 111 1111
Q ss_pred EEcCCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEc
Q 003200 313 VNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQI 392 (840)
Q Consensus 313 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 392 (840)
..+.. ..+..+. ..+++.|++++|.+++..+..++.+++|++|++++|.++ .+|..+.++++|++|++
T Consensus 241 ~~i~~--------~~~~~l~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l 308 (606)
T 3t6q_A 241 EDISP--------AVFEGLC---EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVL 308 (606)
T ss_dssp CCCCG--------GGGGGGG---GSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEEC
T ss_pred cccCh--------hHhchhh---cCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEEC
Confidence 11111 1111111 115667777777777766666777777777777777776 45666777777777777
Q ss_pred cCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCC
Q 003200 393 YDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISD 472 (840)
Q Consensus 393 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~ 472 (840)
++|.+.+..+ ..+.++++|++|++++|.+.... .+..+..+++|++|++++|++++
T Consensus 309 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~-----------------------~~~~~~~l~~L~~L~l~~n~l~~ 364 (606)
T 3t6q_A 309 SANKFENLCQ-ISASNFPSLTHLSIKGNTKRLEL-----------------------GTGCLENLENLRELDLSHDDIET 364 (606)
T ss_dssp TTCCCSBGGG-GCGGGCTTCSEEECCSCSSCCBC-----------------------CSSTTTTCTTCCEEECCSSCCCE
T ss_pred ccCCcCcCch-hhhhccCcCCEEECCCCCccccc-----------------------chhhhhccCcCCEEECCCCcccc
Confidence 7777663322 24444444444444444332110 01112222222222222222211
Q ss_pred CcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccC
Q 003200 473 IFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVN 552 (840)
Q Consensus 473 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 552 (840)
... ....+.
T Consensus 365 ~~~-----------------------------------------------------------------------~~~~~~ 373 (606)
T 3t6q_A 365 SDC-----------------------------------------------------------------------CNLQLR 373 (606)
T ss_dssp EEE-----------------------------------------------------------------------STTTTT
T ss_pred ccC-----------------------------------------------------------------------cchhcc
Confidence 100 000122
Q ss_pred CCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCc-ccCCCCcccEEEccCCcCcCCCCcccccCCCCcE
Q 003200 553 ETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPN-SLGSITSLVWLYLRKNRLSGKIPISLKNCTALAS 631 (840)
Q Consensus 553 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 631 (840)
.+++|++|++++|.+++..|..+..+++|++|++++|++++..+. .+..+++|++|++++|.+++..|..+..+++|++
T Consensus 374 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 453 (606)
T 3t6q_A 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453 (606)
T ss_dssp TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCE
T ss_pred cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCE
Confidence 345566666666666555555555556666666666655544332 2555555555555555555555555555555555
Q ss_pred EeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCc
Q 003200 632 LDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGS 711 (840)
Q Consensus 632 L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~ 711 (840)
|++++|++.+... ..+..+..+++|+.|++++|++++..|..+.++++|
T Consensus 454 L~L~~n~l~~~~~----------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------- 502 (606)
T 3t6q_A 454 LNLQGNHFPKGNI----------------------QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM--------- 502 (606)
T ss_dssp EECTTCBCGGGEE----------------------CSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC---------
T ss_pred EECCCCCCCcccc----------------------ccchhhccCCCccEEECCCCccCccChhhhccccCC---------
Confidence 5555555442100 123456777888888888888887777788777766
Q ss_pred ccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCC
Q 003200 712 VVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIP 784 (840)
Q Consensus 712 ~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 784 (840)
+.|++++|++++.+|..+.+++.| .|++++|++++.+|..++.+++|++|++++|++.+..+
T Consensus 503 ----------~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 503 ----------NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp ----------CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ----------CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 888999999988888899999999 99999999998888889999999999999999987554
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.8e-54 Score=500.84 Aligned_cols=509 Identities=18% Similarity=0.232 Sum_probs=295.2
Q ss_pred CcHHHHHHHHHhhhcCCCCCC--------CCCCCCCCCCCccc---cceecCCCCCCEEEEEcCCCCCCCCCcccccccc
Q 003200 31 CLETERRALLRFKQDLQDPSN--------RLASWTGDGDCCTW---AGVACGNVTGHILELNLRNPSTSNPRSMLVGKVN 99 (840)
Q Consensus 31 ~~~~~~~~ll~~k~~~~~~~~--------~l~~W~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~ 99 (840)
....|+.||.+||+++.++.. ..++|..+.+||.| +||+|+. .|||++|+|+++ .+.|.+|
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~-------~l~g~lp 98 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGF-------GASGRVP 98 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTTS-------CCEEEEC
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecCc-------ccCCcCC
Confidence 345799999999999875421 24589988999999 9999985 489999999997 8899999
Q ss_pred ccccCCCCCCEEeCCCCCCC------C-----CCccccccCCCCCcEEeccCCcccCCCCCCCCCC-CCCCeEeccCccc
Q 003200 100 PALLDLKHLSYLDLSSNDFQ------G-----VQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNL-SDLQFLDLSSNYL 167 (840)
Q Consensus 100 ~~~~~l~~L~~L~Ls~n~~~------~-----~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l-~~L~~L~Ls~n~~ 167 (840)
++++++++|++|||++|.+. + ..+|... +.+|+ ++++++.+.+.+|..+..+ ..+..+++....+
T Consensus 99 ~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~ 175 (636)
T 4eco_A 99 DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175 (636)
T ss_dssp GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCC
T ss_pred hHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccc
Confidence 99999999999999999752 1 0233333 45666 7777777777666555421 1222222221111
Q ss_pred cCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEEC--cCC
Q 003200 168 YVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDL--DSN 245 (840)
Q Consensus 168 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~L--s~n 245 (840)
. . .....++.+.+ ..|
T Consensus 176 ~------------------------~--------------------------------------~~~~~l~~l~l~~~~n 193 (636)
T 4eco_A 176 K------------------------K--------------------------------------SSRITLKDTQIGQLSN 193 (636)
T ss_dssp C------------------------C--------------------------------------CCCCCCCTTTTTCCSC
T ss_pred c------------------------c--------------------------------------ccccchhhhhhccccC
Confidence 0 0 00001111111 234
Q ss_pred CCCCCCcccccCCCCCcEEEcccCccccc-----------------cchhhh--cCCCCcEEecccccCccccCcccccC
Q 003200 246 HFNSSIPDWLYKFSPLECLNLRNNSLQGT-----------------ISDAIG--NLTSVSWLDLSINIGLQGRIPRSMAN 306 (840)
Q Consensus 246 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----------------~~~~l~--~l~~L~~L~L~~n~~~~~~~~~~l~~ 306 (840)
++++ +|..++++++|++|++++|.+++. +|..++ ++++|++|++++ +.+.+.+|..+++
T Consensus 194 ~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~-n~l~~~~p~~l~~ 271 (636)
T 4eco_A 194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN-CPNLTKLPTFLKA 271 (636)
T ss_dssp EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC-CTTCSSCCTTTTT
T ss_pred CCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecC-CcCCccChHHHhc
Confidence 5555 555566666666666666666553 666666 777777777777 5666777777777
Q ss_pred CCCCcEEEcCCCc-ccc-cchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccc--ccc
Q 003200 307 FCNLKSVNLRGVH-LSQ-EISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPE--SFG 382 (840)
Q Consensus 307 l~~L~~L~l~~~~-~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~--~l~ 382 (840)
+++|++|++++|+ +++ .+|..+..+. .+..+++|++|++++|+++ .+|. .++
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~-----------------------~~~~l~~L~~L~L~~n~l~-~ip~~~~l~ 327 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALA-----------------------DAPVGEKIQIIYIGYNNLK-TFPVETSLQ 327 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHH-----------------------HSGGGGTCCEEECCSSCCS-SCCCHHHHT
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhh-----------------------ccccCCCCCEEECCCCcCC-ccCchhhhc
Confidence 7777777777777 777 7777766541 0112244555555555554 3444 455
Q ss_pred CCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcE
Q 003200 383 QLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQY 462 (840)
Q Consensus 383 ~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 462 (840)
++++|++|++++|.+.|.+| .+..+++|++|++++|.++ .+|.++..+
T Consensus 328 ~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-------------------------~lp~~l~~l----- 375 (636)
T 4eco_A 328 KMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-------------------------EIPANFCGF----- 375 (636)
T ss_dssp TCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-------------------------ECCTTSEEE-----
T ss_pred cCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-------------------------cccHhhhhh-----
Confidence 55555555555555554444 2333333333333333222 011111111
Q ss_pred EEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCccc
Q 003200 463 LNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGS 542 (840)
Q Consensus 463 L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~ 542 (840)
T Consensus 376 -------------------------------------------------------------------------------- 375 (636)
T 4eco_A 376 -------------------------------------------------------------------------------- 375 (636)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCchhhhccCCCCc-ccEEeccCCcCccccCccccCCC--CcCEEEccCCcCCCCCCcccC-------CCCcccEEEccC
Q 003200 543 ISHFLCYRVNETKS-LEGLKLTDNYLQGEIPDCWMSYQ--NLKVLKLSNNKFSGNLPNSLG-------SITSLVWLYLRK 612 (840)
Q Consensus 543 ~~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~l~-------~l~~L~~L~L~~ 612 (840)
++ |++|++++|.++ .+|..+...+ +|++|++++|++++..|..+. .+++|++|++++
T Consensus 376 ------------~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~ 442 (636)
T 4eco_A 376 ------------TEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442 (636)
T ss_dssp ------------CTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCS
T ss_pred ------------cccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcC
Confidence 22 333333333333 2333333222 444444444544444444444 445566666666
Q ss_pred CcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccC
Q 003200 613 NRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAI 692 (840)
Q Consensus 613 n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 692 (840)
|++++..+..+..+++|++|++++|+++ .+|...+.... ..+.++++|+.|++++|+++ .+
T Consensus 443 N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~-----------------~~~~~l~~L~~L~Ls~N~l~-~l 503 (636)
T 4eco_A 443 NQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN-----------------ENFKNTYLLTSIDLRFNKLT-KL 503 (636)
T ss_dssp SCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT-----------------EECTTGGGCCEEECCSSCCC-BC
T ss_pred CccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc-----------------ccccccCCccEEECcCCcCC-cc
Confidence 6665322223444566666666666665 45544332111 01122335555555555555 44
Q ss_pred Ccccc--ccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeC------CCCcccccCCcchh
Q 003200 693 PKCIS--NLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINF------SFNTFTGRIPESIG 764 (840)
Q Consensus 693 p~~~~--~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L------s~N~l~~~~p~~l~ 764 (840)
|..+. .+++| +.|+|++|++++ +|..+.++++|+.|+| ++|++.+.+|..++
T Consensus 504 p~~~~~~~l~~L-------------------~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~ 563 (636)
T 4eco_A 504 SDDFRATTLPYL-------------------VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563 (636)
T ss_dssp CGGGSTTTCTTC-------------------CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG
T ss_pred ChhhhhccCCCc-------------------CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHh
Confidence 54443 44333 555666665554 5555555666666666 56778888888888
Q ss_pred ccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccc
Q 003200 765 TMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTG 805 (840)
Q Consensus 765 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 805 (840)
++++|++|+|++|++ +.+|..+. ++|++|++++|++.-
T Consensus 564 ~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 564 LCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp GCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred cCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 888888888888888 57887766 788888888887653
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.6e-52 Score=487.41 Aligned_cols=520 Identities=21% Similarity=0.247 Sum_probs=288.7
Q ss_pred CCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEE
Q 003200 106 KHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLD 185 (840)
Q Consensus 106 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 185 (840)
+++++|+|++|.++++ .+..+.++++|++|++++|++++..|.+|+++++|++|++++|.+....+..|+++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 5666666666666643 344566666666666666666666666666666666666666666655555566565555555
Q ss_pred ccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCC-CCcccccCCCCCcEE
Q 003200 186 LRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNS-SIPDWLYKFSPLECL 264 (840)
Q Consensus 186 Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L 264 (840)
+++|.+.+. ++ ..++++++|++|++++|.+.+ .+|..++++++|++|
T Consensus 111 L~~n~l~~~--------------------------~~------~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L 158 (606)
T 3vq2_A 111 AVETKLASL--------------------------ES------FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158 (606)
T ss_dssp CTTSCCCCS--------------------------SS------SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEE
T ss_pred ccCCccccc--------------------------cc------cccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEE
Confidence 555555443 32 446666666666666666654 456666666666666
Q ss_pred EcccCccccccchhhhcCCCCc----EEecccccCccccCcccccCCCCCcEEEcCCCccc-ccchHHHHhhccCCCCCC
Q 003200 265 NLRNNSLQGTISDAIGNLTSVS----WLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLS-QEISEILDIFSGCVSNGL 339 (840)
Q Consensus 265 ~L~~n~l~~~~~~~l~~l~~L~----~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~L 339 (840)
++++|.+++..+..++.+++|+ +|++++ +.+.+..+..+... +|+.|++++|.+. +..+..+..+. .+
T Consensus 159 ~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~-n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~-----~L 231 (606)
T 3vq2_A 159 DLSYNYIQTITVNDLQFLRENPQVNLSLDMSL-NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLA-----GL 231 (606)
T ss_dssp ECCSSCCCEECTTTTHHHHHCTTCCCEEECTT-CCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTT-----TC
T ss_pred EccCCcceecChhhhhhhhccccccceeeccC-CCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccc-----cc
Confidence 6666666665555555555443 566666 44444333333333 6666666666655 33444444444 44
Q ss_pred CEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEc-cCCccccccChhhhccCCCCCEEEcc
Q 003200 340 ESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQI-YDNKLNGTLSEFHFANLTKLSWFRVG 418 (840)
Q Consensus 340 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~i~~~~~~~l~~L~~L~L~ 418 (840)
+.+++..+.+.+. ..+.. +....+..+..+ .++.+++ ..+.+.+.++. +..+++|+.++++
T Consensus 232 ~~l~l~~~~~~~~--------~~l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~ 293 (606)
T 3vq2_A 232 HVHRLILGEFKDE--------RNLEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLA 293 (606)
T ss_dssp EEEEEEEECCTTS--------CCCSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEE
T ss_pred ccccccccccccC--------Ccccc-------cChHHhhhhhhc-cHhheeccccccccccccc--cccCCCCCEEEec
Confidence 4444433222110 00000 011111122222 3445555 44445444433 4455555555554
Q ss_pred CcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccc
Q 003200 419 GNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGK 498 (840)
Q Consensus 419 ~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 498 (840)
+|.+.. ++ ++..+++|++|++++|++.. +|. + .+
T Consensus 294 ~~~~~~-------------------------l~-~l~~~~~L~~L~l~~n~l~~-lp~-~--~l---------------- 327 (606)
T 3vq2_A 294 GVSIKY-------------------------LE-DVPKHFKWQSLSIIRCQLKQ-FPT-L--DL---------------- 327 (606)
T ss_dssp SCCCCC-------------------------CC-CCCTTCCCSEEEEESCCCSS-CCC-C--CC----------------
T ss_pred Cccchh-------------------------hh-hccccccCCEEEcccccCcc-ccc-C--CC----------------
Confidence 444321 11 23334444444444444421 111 0 22
Q ss_pred cccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCC
Q 003200 499 ISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSY 578 (840)
Q Consensus 499 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 578 (840)
++|++|++++|...+.. .+..+
T Consensus 328 --------------------------------------------------------~~L~~L~l~~n~~~~~~--~~~~l 349 (606)
T 3vq2_A 328 --------------------------------------------------------PFLKSLTLTMNKGSISF--KKVAL 349 (606)
T ss_dssp --------------------------------------------------------SSCCEEEEESCSSCEEC--CCCCC
T ss_pred --------------------------------------------------------CccceeeccCCcCccch--hhccC
Confidence 22333333333222111 22333
Q ss_pred CCcCEEEccCCcCCCC--CCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCC-hhhhhccCCcc
Q 003200 579 QNLKVLKLSNNKFSGN--LPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIP-TWFGERFSRML 655 (840)
Q Consensus 579 ~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p-~~~~~~l~~L~ 655 (840)
++|++|++++|++++. .|..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+..| ..+. .+++|+
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~ 427 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFL-SLEKLL 427 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTT-TCTTCC
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhh-ccccCC
Confidence 4444444444444332 13344444444444444444442 33444555555555555555554444 2232 455666
Q ss_pred EEEccCCcccccCCccccCccccceeecccccccc-cCCccccccccCcccccccCcccccccCCcceEEeCCCCccccc
Q 003200 656 VLILRSNQFHGPLPKTICDLAFLQILDLADNNLSG-AIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGE 734 (840)
Q Consensus 656 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 734 (840)
+|++++|.+++..|..+..+++|++|++++|++++ .+|..+..+++| +.|++++|++++.
T Consensus 428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-------------------~~L~Ls~n~l~~~ 488 (606)
T 3vq2_A 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL-------------------TFLDLSKCQLEQI 488 (606)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-------------------CEEECTTSCCCEE
T ss_pred EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC-------------------CEEECCCCcCCcc
Confidence 66666666666666666667777777777777776 356667666666 7778888887777
Q ss_pred CcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCC-CCCeEeccCCcccccCCC
Q 003200 735 ILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLT-FLNHLNLSNNNLTGKIPL 809 (840)
Q Consensus 735 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~ip~ 809 (840)
.|..+.++++|++|++++|++++.+|..|+++++|++||+++|+++ .+|..+..++ +|++|++++|++.+..|.
T Consensus 489 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 489 SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred ChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 7777888888888888888888777888888888888888888887 6777777776 588888888888776553
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.4e-52 Score=484.63 Aligned_cols=521 Identities=18% Similarity=0.190 Sum_probs=354.0
Q ss_pred CCCEEEEEcCCCCCCCCCccccccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCC
Q 003200 74 TGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGN 153 (840)
Q Consensus 74 ~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~ 153 (840)
..++++|+++++ .+.+..+..|.++++|++|+|++|.++++ .|..++.+++|++|+|++|.+++..|..|++
T Consensus 31 ~~~l~~L~Ls~n-------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 31 PSSTKNIDLSFN-------PLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp CTTCCEEECTTS-------CCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred CCCcCEEECCCC-------CcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence 357999999997 67776677999999999999999999965 5778999999999999999999888999999
Q ss_pred CCCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccC
Q 003200 154 LSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQN 233 (840)
Q Consensus 154 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~ 233 (840)
+++|++|++++|.+....+..++++++|++|++++|.+.+.. .+..++++++|++|++++|.+++.++ ..++.
T Consensus 103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~------~~~~~ 175 (606)
T 3vq2_A 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK-LPAYFSNLTNLVHVDLSYNYIQTITV------NDLQF 175 (606)
T ss_dssp CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC-CCGGGGTCTTCCEEECCSSCCCEECT------TTTHH
T ss_pred cccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee-chHhHhhcCCCCEEEccCCcceecCh------hhhhh
Confidence 999999999999999888888999999999999999998642 34567788999999999998888765 55666
Q ss_pred CCCCC----EEECcCCCCCCCCcccccCCCCCcEEEcccCccc-cccchhhhcCCCCcEEecccccCccccCcccccCCC
Q 003200 234 LTSLK----HLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQ-GTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFC 308 (840)
Q Consensus 234 l~~L~----~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~ 308 (840)
+++|+ +|++++|.+++..+..+... +|++|++++|.+. +..|..+.+++.|+.+++..+ .+.+. .
T Consensus 176 l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~-~~~~~--------~ 245 (606)
T 3vq2_A 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG-EFKDE--------R 245 (606)
T ss_dssp HHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEE-CCTTS--------C
T ss_pred hhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccccc-ccccC--------C
Confidence 65554 79999998886555555444 8899999988876 466777888888888887652 22110 0
Q ss_pred CCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEc-cCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCC
Q 003200 309 NLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDM-RSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTL 387 (840)
Q Consensus 309 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l-~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 387 (840)
.+.. +.. ..+..+. ...++.+++ ..+.+.+.+|. +..+++|++|++++|.+... | .+..+++|
T Consensus 246 ~l~~-------~~~---~~~~~l~---~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l-~-~l~~~~~L 309 (606)
T 3vq2_A 246 NLEI-------FEP---SIMEGLC---DVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYL-E-DVPKHFKW 309 (606)
T ss_dssp CCSC-------CCG---GGGTTGG---GSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCC-C-CCCTTCCC
T ss_pred cccc-------cCh---HHhhhhh---hccHhheeccccccccccccc-cccCCCCCEEEecCccchhh-h-hccccccC
Confidence 0100 000 0111110 003444444 44455555554 55556666666666665432 3 55555666
Q ss_pred CEEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccC
Q 003200 388 RELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLN 467 (840)
Q Consensus 388 ~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~ 467 (840)
++|++++|.+ +.+|. + .+ ++|++|++++
T Consensus 310 ~~L~l~~n~l-~~lp~--~-~l------------------------------------------------~~L~~L~l~~ 337 (606)
T 3vq2_A 310 QSLSIIRCQL-KQFPT--L-DL------------------------------------------------PFLKSLTLTM 337 (606)
T ss_dssp SEEEEESCCC-SSCCC--C-CC------------------------------------------------SSCCEEEEES
T ss_pred CEEEcccccC-ccccc--C-CC------------------------------------------------CccceeeccC
Confidence 6666666655 34442 2 34 4444444444
Q ss_pred CCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchh
Q 003200 468 SRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFL 547 (840)
Q Consensus 468 n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 547 (840)
|+..+..+
T Consensus 338 n~~~~~~~------------------------------------------------------------------------ 345 (606)
T 3vq2_A 338 NKGSISFK------------------------------------------------------------------------ 345 (606)
T ss_dssp CSSCEECC------------------------------------------------------------------------
T ss_pred CcCccchh------------------------------------------------------------------------
Confidence 42211100
Q ss_pred hhccCCCCcccEEeccCCcCccc--cCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCC-cccc
Q 003200 548 CYRVNETKSLEGLKLTDNYLQGE--IPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIP-ISLK 624 (840)
Q Consensus 548 ~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~ 624 (840)
+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+..| ..+.
T Consensus 346 ---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 346 ---KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp ---CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred ---hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhh
Confidence 00123344444444444332 24444455555555555555543 33445555555555555555555444 4555
Q ss_pred cCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccc-cCCccccCccccceeecccccccccCCccccccccCc
Q 003200 625 NCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHG-PLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMV 703 (840)
Q Consensus 625 ~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 703 (840)
++++|++|++++|++.+..|..+. .+++|++|++++|++++ .+|..+..+++|+.|++++|++++..|..+.++++|
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L- 499 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL- 499 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC-
T ss_pred ccccCCEEECcCCCCCccchhhhc-CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC-
Confidence 566666666666666655555554 56666666666666665 356777778888888888888887777778777766
Q ss_pred ccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccC-CCCeEeCCCCccccc
Q 003200 704 TVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMR-ALESVDFSVNQLSGE 782 (840)
Q Consensus 704 ~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~ 782 (840)
+.|++++|++++.+|..+.++++|++|++++|+++ .+|..+..++ +|++|++++|++.+.
T Consensus 500 ------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 500 ------------------QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp ------------------CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred ------------------CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence 88888888888888888888999999999999988 6777788886 599999999998865
Q ss_pred CC
Q 003200 783 IP 784 (840)
Q Consensus 783 ~p 784 (840)
.+
T Consensus 561 c~ 562 (606)
T 3vq2_A 561 CE 562 (606)
T ss_dssp ST
T ss_pred Cc
Confidence 44
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.5e-51 Score=488.11 Aligned_cols=524 Identities=21% Similarity=0.217 Sum_probs=316.2
Q ss_pred CCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCC-CCCCCCCCCCCeEeccCccccCCCcccccCCCCCCE
Q 003200 105 LKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMI-PPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEH 183 (840)
Q Consensus 105 l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~-p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~ 183 (840)
.+++++|||++|.++++ .|..+..+++|++|+|++|...+.+ |.+|+++++|++|+|++|.+....+.+|.++++|++
T Consensus 23 p~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 35666666666666643 4555666666666666666444333 556666666666666666666555556666666666
Q ss_pred EEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCc-ccccCCCCCc
Q 003200 184 LDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIP-DWLYKFSPLE 262 (840)
Q Consensus 184 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~ 262 (840)
|+|++|.+++..... ..+..+++|++|++++|.+.+..+ ..|+++++|+
T Consensus 102 L~Ls~n~l~~~~~~~------------------------------~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKD------------------------------GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151 (844)
T ss_dssp EECTTCCCSSCCSTT------------------------------CCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred eeCcCCCCCcccccC------------------------------ccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence 666555554421111 235556666666666666655433 3556666666
Q ss_pred EEEcccCccccccchhhhcC--CCCcEEecccccCccccCcccccCCCC------CcEEEcCCCcccccchHHHHhhccC
Q 003200 263 CLNLRNNSLQGTISDAIGNL--TSVSWLDLSINIGLQGRIPRSMANFCN------LKSVNLRGVHLSQEISEILDIFSGC 334 (840)
Q Consensus 263 ~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~~~~~~~~ 334 (840)
+|++++|.+++..+..+..+ ++|+.|+++. +.+.+..|..++.+++ |+.|++++|.+.+..+..+....
T Consensus 152 ~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l-- 228 (844)
T 3j0a_A 152 SIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA-NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI-- 228 (844)
T ss_dssp EEEEESSCCCCCCSGGGHHHHHCSSCCCEECC-SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS--
T ss_pred EEECCCCcCCeeCHHHcccccCCccceEECCC-CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhc--
Confidence 66666666665555555555 5666666666 4555555555544443 66666666666555544443221
Q ss_pred CCCCCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCC--CCCCEEEccCCccccccChhhhccCCCC
Q 003200 335 VSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQL--STLRELQIYDNKLNGTLSEFHFANLTKL 412 (840)
Q Consensus 335 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~i~~~~~~~l~~L 412 (840)
....++.+.+..+..... +..+.+.+..+..|.++ ++|+.|++++|.+.+..+ ..|..+++|
T Consensus 229 ~~~~l~~L~l~~~~~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L 292 (844)
T 3j0a_A 229 SKSQAFSLILAHHIMGAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS-RVFETLKDL 292 (844)
T ss_dssp CSCCBSEEECCSSCCBCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS-CCSSSCCCC
T ss_pred Ccccccceeccccccccc---------------ccccccCCCChhhhhccccCCccEEECCCCcccccCh-hhhhcCCCC
Confidence 112455555553322110 11122222223333333 456666666666553322 245555555
Q ss_pred CEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccC
Q 003200 413 SWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGL 492 (840)
Q Consensus 413 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~ 492 (840)
+.|++++|.+.... +..+..+++|++|++++|++++..+..
T Consensus 293 ~~L~L~~n~i~~~~------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------------- 333 (844)
T 3j0a_A 293 KVLNLAYNKINKIA------------------------DEAFYGLDNLQVLNLSYNLLGELYSSN--------------- 333 (844)
T ss_dssp CEEEEESCCCCEEC------------------------TTTTTTCSSCCEEEEESCCCSCCCSCS---------------
T ss_pred CEEECCCCcCCCCC------------------------hHHhcCCCCCCEEECCCCCCCccCHHH---------------
Confidence 55555555544322 222333344444444444433322211
Q ss_pred cccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccC
Q 003200 493 NQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIP 572 (840)
Q Consensus 493 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 572 (840)
+..+++|+.|++++|.+++..+
T Consensus 334 ----------------------------------------------------------~~~l~~L~~L~L~~N~i~~~~~ 355 (844)
T 3j0a_A 334 ----------------------------------------------------------FYGLPKVAYIDLQKNHIAIIQD 355 (844)
T ss_dssp ----------------------------------------------------------CSSCTTCCEEECCSCCCCCCCS
T ss_pred ----------------------------------------------------------hcCCCCCCEEECCCCCCCccCh
Confidence 1224556666666666665555
Q ss_pred ccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccC
Q 003200 573 DCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFS 652 (840)
Q Consensus 573 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~ 652 (840)
..|..+++|++|++++|.+++. ..+++|+.|++++|+++ .+|.. ..+++.|++++|++++.-...+...++
T Consensus 356 ~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~ 426 (844)
T 3j0a_A 356 QTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVP 426 (844)
T ss_dssp SCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCT
T ss_pred hhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCC
Confidence 5666677777777777776632 22566777777777776 34432 356777778877777543333333678
Q ss_pred CccEEEccCCcccccCCc-cccCccccceeecccccccc-----cCCccccccccCcccccccCcccccccCCcceEEeC
Q 003200 653 RMLVLILRSNQFHGPLPK-TICDLAFLQILDLADNNLSG-----AIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDI 726 (840)
Q Consensus 653 ~L~~L~l~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~L 726 (840)
+|++|++++|++++..+. .+..+++|+.|++++|.+++ ..|..+.++++| +.|+|
T Consensus 427 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L-------------------~~L~L 487 (844)
T 3j0a_A 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL-------------------QVLYL 487 (844)
T ss_dssp TCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCE-------------------ECCCC
T ss_pred ccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccc-------------------cEEEC
Confidence 888888888888765443 34567888999999998873 333445555444 88999
Q ss_pred CCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCccccc
Q 003200 727 SRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGK 806 (840)
Q Consensus 727 s~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 806 (840)
++|++++.+|..+.++++|+.|+|++|++++..|..+. ++|+.|||++|++++.+|+.+. +|+.|++++|++...
T Consensus 488 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICE 562 (844)
T ss_dssp CHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCS
T ss_pred CCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccc
Confidence 99999988888899999999999999999977777665 8999999999999998887764 788999999999876
Q ss_pred CC
Q 003200 807 IP 808 (840)
Q Consensus 807 ip 808 (840)
.+
T Consensus 563 c~ 564 (844)
T 3j0a_A 563 CE 564 (844)
T ss_dssp SS
T ss_pred cc
Confidence 65
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.2e-51 Score=482.56 Aligned_cols=309 Identities=20% Similarity=0.254 Sum_probs=195.6
Q ss_pred CCCcHHHHHHHHHhhhcCCCCCCCCCCCCCC-----CCC--ccc------------cceecCCCCCCEEEEEcCCCCCCC
Q 003200 29 VGCLETERRALLRFKQDLQDPSNRLASWTGD-----GDC--CTW------------AGVACGNVTGHILELNLRNPSTSN 89 (840)
Q Consensus 29 ~~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~-----~~~--c~w------------~gv~c~~~~~~v~~L~L~~~~~~~ 89 (840)
+.+..+|+.||++||+++.+| +|+.+ .+| |.| .||+|+. .+||++|+|+++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~---- 333 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF---- 333 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT----
T ss_pred cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccC----
Confidence 345678999999999999876 78733 355 999 9999986 689999999997
Q ss_pred CCccccccccccccCCCCCCEEeC-CCCCCCCCCccccccCC----C-----CCcE------Eec-cCCccc--------
Q 003200 90 PRSMLVGKVNPALLDLKHLSYLDL-SSNDFQGVQIPRFIGSM----R-----NLRY------LNL-SDTQFV-------- 144 (840)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~L~~L~L-s~n~~~~~~~p~~l~~l----~-----~L~~------L~L-s~n~i~-------- 144 (840)
.+.|.+|++++++++|++||| ++|.+.|. .|...... . .++. ++. ....+.
T Consensus 334 ---~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~ 409 (876)
T 4ecn_A 334 ---GAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN 409 (876)
T ss_dssp ---CCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHH
T ss_pred ---CCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhh
Confidence 899999999999999999999 88877653 22110000 0 0000 000 000000
Q ss_pred ---CCCCCCCCCCCCCCeEeccC--ccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCc
Q 003200 145 ---GMIPPQLGNLSDLQFLDLSS--NYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHH 219 (840)
Q Consensus 145 ---~~~p~~l~~l~~L~~L~Ls~--n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 219 (840)
...+........++.+.+.. |.+.. .+..|.++++|++|+|++|++++... +..+ +..+.|.+.+
T Consensus 410 ~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i-~~~~--------~~~s~n~~~g 479 (876)
T 4ecn_A 410 RNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNI-AVDW--------EDANSDYAKQ 479 (876)
T ss_dssp TCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGB-SSSC--------SCTTSHHHHH
T ss_pred hCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcc-cccc--------cccccccccc
Confidence 00111112222333333333 44443 23345555555555555555443100 0000 0000000000
Q ss_pred CCCCCCCCCCccc--CCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccCc-ccc-ccchhhhcCC-------CCcEE
Q 003200 220 FPTLASPIPRGLQ--NLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNS-LQG-TISDAIGNLT-------SVSWL 288 (840)
Q Consensus 220 ~~~~~~~l~~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~-------~L~~L 288 (840)
.+|..++ ++++|++|+|++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.++ +|++|
T Consensus 480 ------~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 480 ------YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp ------HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred ------cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence 1346666 88889999999988888888888888899999999887 887 7887776665 66666
Q ss_pred ecccccCccccCcc--cccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCCCCCEE
Q 003200 289 DLSINIGLQGRIPR--SMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTL 366 (840)
Q Consensus 289 ~L~~n~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 366 (840)
++++ +.+. .+|. .+++++ +|+.|++++|+++ .+| .++.+++|++|
T Consensus 554 ~Ls~-N~L~-~ip~~~~l~~L~-----------------------------~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L 600 (876)
T 4ecn_A 554 YMGY-NNLE-EFPASASLQKMV-----------------------------KLGLLDCVHNKVR-HLE-AFGTNVKLTDL 600 (876)
T ss_dssp ECCS-SCCC-BCCCHHHHTTCT-----------------------------TCCEEECTTSCCC-BCC-CCCTTSEESEE
T ss_pred EeeC-CcCC-ccCChhhhhcCC-----------------------------CCCEEECCCCCcc-cch-hhcCCCcceEE
Confidence 6665 3444 4444 444444 5555555555555 456 67788889999
Q ss_pred EccCCcccccccccccCCCC-CCEEEccCCccccccC
Q 003200 367 NLANNSIVGLIPESFGQLST-LRELQIYDNKLNGTLS 402 (840)
Q Consensus 367 ~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~i~ 402 (840)
++++|++. .+|..+.++++ |+.|++++|.+. .+|
T Consensus 601 ~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp 635 (876)
T 4ecn_A 601 KLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP 635 (876)
T ss_dssp ECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred ECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence 99999888 67777888888 999999999886 444
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.6e-49 Score=473.02 Aligned_cols=530 Identities=18% Similarity=0.206 Sum_probs=365.4
Q ss_pred CEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccc-cCCCcccccCCCCCCEEEcc
Q 003200 109 SYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYL-YVDNVWWLSGLSFLEHLDLR 187 (840)
Q Consensus 109 ~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~-~~~~~~~~~~l~~L~~L~Ls 187 (840)
+..|.++++++ .+|. ..++|++|+|++|.+++..|.+|.++++|++|++++|.. ....+..|.++++|++|+|+
T Consensus 7 ~~~dcs~~~L~--~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLT--QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSS--CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCC--CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 46777888888 4676 357899999999999888888888999899888888843 22223344444444444444
Q ss_pred CcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCccc--ccCCCCCcEEE
Q 003200 188 SVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDW--LYKFSPLECLN 265 (840)
Q Consensus 188 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~ 265 (840)
+| .+.+..+ ..|.++++|++|+|++|.+.+.+|.. +.++++|++|+
T Consensus 82 ~N--------------------------~l~~~~p------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~ 129 (844)
T 3j0a_A 82 SS--------------------------KIYFLHP------DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129 (844)
T ss_dssp TC--------------------------CCCEECT------TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE
T ss_pred CC--------------------------cCcccCH------hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE
Confidence 43 3333322 66777777777777777777655544 67777777777
Q ss_pred cccCccccccc-hhhhcCCCCcEEecccccCccccCcccccCC--CCCcEEEcCCCcccccchHHHHhhccCCCCCCCEE
Q 003200 266 LRNNSLQGTIS-DAIGNLTSVSWLDLSINIGLQGRIPRSMANF--CNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESL 342 (840)
Q Consensus 266 L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L 342 (840)
+++|.+++..+ ..++++++|++|++++ +.+.+..+..+..+ + +|+.|
T Consensus 130 Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~-N~i~~~~~~~l~~l~~~-----------------------------~L~~L 179 (844)
T 3j0a_A 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSS-NQIFLVCEHELEPLQGK-----------------------------TLSFF 179 (844)
T ss_dssp EESCCCCCCCCCGGGGTCSSCCEEEEES-SCCCCCCSGGGHHHHHC-----------------------------SSCCC
T ss_pred CCCCcccccccchhHhhCCCCCEEECCC-CcCCeeCHHHcccccCC-----------------------------ccceE
Confidence 77777765433 4566666666666665 34444444443333 3 55555
Q ss_pred EccCCcccccCccccCCCCC------CCEEEccCCcccccccccccCC---CCCCEEEccCCccccccChhhhccCCCCC
Q 003200 343 DMRSSSIYGHLTDQLGQFRN------LVTLNLANNSIVGLIPESFGQL---STLRELQIYDNKLNGTLSEFHFANLTKLS 413 (840)
Q Consensus 343 ~l~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~i~~~~~~~l~~L~ 413 (840)
+++.|.+.+..|..++.+++ |++|++++|.+.+..+..+... .+++.+.+..+......
T Consensus 180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~------------ 247 (844)
T 3j0a_A 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF------------ 247 (844)
T ss_dssp EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS------------
T ss_pred ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc------------
Confidence 55555555555554444433 7777777776666555554432 44555555533321100
Q ss_pred EEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccC--CCCCcEEEccCCCCCCCcchHHHhccCCccEEEcc
Q 003200 414 WFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHS--QKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVG 491 (840)
Q Consensus 414 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~--l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~ 491 (840)
..+.+ .......+.. .++|++|++++|.+.+..+..+ ..+++|+.|+++
T Consensus 248 ----~~~~l------------------------~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~ 298 (844)
T 3j0a_A 248 ----GFHNI------------------------KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF-ETLKDLKVLNLA 298 (844)
T ss_dssp ----SCSSS------------------------TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS-SSCCCCCEEEEE
T ss_pred ----ccccc------------------------CCCChhhhhccccCCccEEECCCCcccccChhhh-hcCCCCCEEECC
Confidence 00111 1111122222 2556666666666655443322 223333333333
Q ss_pred CcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCcccc
Q 003200 492 LNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEI 571 (840)
Q Consensus 492 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 571 (840)
+|.+. +..+. .+..+++|++|++++|.+++..
T Consensus 299 ~n~i~--------------------------------------------~~~~~----~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 299 YNKIN--------------------------------------------KIADE----AFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp SCCCC--------------------------------------------EECTT----TTTTCSSCCEEEEESCCCSCCC
T ss_pred CCcCC--------------------------------------------CCChH----HhcCCCCCCEEECCCCCCCccC
Confidence 33332 22222 1334688999999999999888
Q ss_pred CccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhcc
Q 003200 572 PDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERF 651 (840)
Q Consensus 572 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l 651 (840)
|..|..+++|++|++++|++.+..+..|..+++|++|++++|.+++. + .+++|+.|++++|+++ .+|.. .
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N~l~-~l~~~----~ 400 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-H----FIPSIPDIFLSGNKLV-TLPKI----N 400 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-S----SCCSCSEEEEESCCCC-CCCCC----C
T ss_pred HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-c----CCCCcchhccCCCCcc-ccccc----c
Confidence 99999999999999999999988888899999999999999999843 2 3789999999999998 66653 5
Q ss_pred CCccEEEccCCcccccCC-ccccCccccceeecccccccccCCc-cccccccCcccccccCcccccccCCcceEEeCCCC
Q 003200 652 SRMLVLILRSNQFHGPLP-KTICDLAFLQILDLADNNLSGAIPK-CISNLTGMVTVKSFTGSVVYREILPLVSLLDISRN 729 (840)
Q Consensus 652 ~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N 729 (840)
.+++.|++++|++++... ..+..+++|+.|++++|++++..+. .+..++ +|+.|++++|
T Consensus 401 ~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~-------------------~L~~L~Ls~N 461 (844)
T 3j0a_A 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP-------------------SLEQLFLGEN 461 (844)
T ss_dssp TTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCT-------------------TCCBCEEESC
T ss_pred cccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCC-------------------ccccccCCCC
Confidence 689999999999987532 3456899999999999999865443 233344 4499999999
Q ss_pred ccc-----ccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCccc
Q 003200 730 NFS-----GEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLT 804 (840)
Q Consensus 730 ~l~-----~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 804 (840)
.++ +..+..+.++++|+.|+|++|++++.+|..|..+++|++|+|++|++++..|..+. ++|++|++++|+++
T Consensus 462 ~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~ 539 (844)
T 3j0a_A 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLL 539 (844)
T ss_dssp CCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCC
T ss_pred ccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCC
Confidence 997 44556788999999999999999999999999999999999999999987777666 89999999999999
Q ss_pred ccCCCCCcCCCcCcCCCCCC-CCC
Q 003200 805 GKIPLSTQLQSFNASSFAGN-DLC 827 (840)
Q Consensus 805 g~ip~~~~~~~~~~~~~~gn-~lc 827 (840)
|.+|.. |..+....+.|| ..|
T Consensus 540 ~~~~~~--~~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 540 APNPDV--FVSLSVLDITHNKFIC 561 (844)
T ss_dssp CCCSCC--CSSCCEEEEEEECCCC
T ss_pred CCChhH--hCCcCEEEecCCCccc
Confidence 999965 556665666677 555
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.7e-48 Score=444.57 Aligned_cols=231 Identities=21% Similarity=0.247 Sum_probs=175.9
Q ss_pred cccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCC--CcccccCCCCcEEe
Q 003200 556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKI--PISLKNCTALASLD 633 (840)
Q Consensus 556 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~ 633 (840)
+|++|++++|.+. .+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|++++.. |..+.++++|++|+
T Consensus 305 ~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ 379 (570)
T 2z63_A 305 GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379 (570)
T ss_dssp CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEE
T ss_pred CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEE
Confidence 4555555555554 3332 2455666666666666554443 45666777777777666443 56677777777777
Q ss_pred CCCCcccccCChhhhhccCCccEEEccCCcccccCC-ccccCccccceeecccccccccCCccccccccCcccccccCcc
Q 003200 634 VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLP-KTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSV 712 (840)
Q Consensus 634 ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~ 712 (840)
+++|.+.+..+. +. .+++|+.|++++|.+.+..| ..+..+++|+.|++++|++.+..|..+..+++|
T Consensus 380 l~~n~l~~~~~~-~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L---------- 447 (570)
T 2z63_A 380 LSFNGVITMSSN-FL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL---------- 447 (570)
T ss_dssp CCSCSEEEEEEE-EE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC----------
T ss_pred CCCCcccccccc-cc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC----------
Confidence 777777644333 44 67778888888887777655 467788888889999888888888888777766
Q ss_pred cccccCCcceEEeCCCCccc-ccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCC
Q 003200 713 VYREILPLVSLLDISRNNFS-GEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLT 791 (840)
Q Consensus 713 ~~~~~~~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 791 (840)
+.|++++|+++ +.+|..+..+++|++|++++|++++..|..|+.+++|++|++++|++++..|..+..++
T Consensus 448 ---------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 518 (570)
T 2z63_A 448 ---------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518 (570)
T ss_dssp ---------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred ---------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhccc
Confidence 88999999987 57888899999999999999999988899999999999999999999988888899999
Q ss_pred CCCeEeccCCcccccCCCCCc
Q 003200 792 FLNHLNLSNNNLTGKIPLSTQ 812 (840)
Q Consensus 792 ~L~~L~ls~N~l~g~ip~~~~ 812 (840)
+|++|++++|++++.+|....
T Consensus 519 ~L~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 519 SLQKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp TCCEEECCSSCBCCCTTTTHH
T ss_pred CCcEEEecCCcccCCCcchHH
Confidence 999999999999999887543
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4e-48 Score=447.36 Aligned_cols=499 Identities=21% Similarity=0.224 Sum_probs=289.3
Q ss_pred CCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEE
Q 003200 106 KHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLD 185 (840)
Q Consensus 106 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 185 (840)
+++++|||++|.++++ .+..+..+++|++|++++|++++..|.+|+++++|++|++++|.+....+..|.++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 4688888888888754 455677788888888888888877777788888888888888887777777777777777777
Q ss_pred ccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCC----
Q 003200 186 LRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPL---- 261 (840)
Q Consensus 186 Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L---- 261 (840)
+++|+++..+.. .++.+++|++|++++|.+.+.. +|..++++++|++|++++|.+++..+..++.+++|
T Consensus 107 L~~n~l~~l~~~--~~~~l~~L~~L~L~~n~l~~~~-----lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 107 AVETNLASLENF--PIGHLKTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp CTTSCCCCSTTC--SCTTCTTCCEEECCSSCCCCCC-----CCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCC
T ss_pred ccccccccCCCc--cccccccccEEecCCCccceec-----ChhhhcccCCCCEEeCcCCccceecHHHccchhccchhh
Confidence 777777665431 2444555555555555444321 12445555555555555555544444444444444
Q ss_pred cEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCE
Q 003200 262 ECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLES 341 (840)
Q Consensus 262 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 341 (840)
++|++++|.+++..+..+..+ +|+.|++++|......++..+..++.++..
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~---------------------------- 230 (570)
T 2z63_A 180 LSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVH---------------------------- 230 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEE----------------------------
T ss_pred hhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCcccccee----------------------------
Confidence 445555555444444433333 444444444211111222223333333222
Q ss_pred EEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCC--CCCEEEccCC-ccccccChhhhccCCCCCEEEcc
Q 003200 342 LDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLS--TLRELQIYDN-KLNGTLSEFHFANLTKLSWFRVG 418 (840)
Q Consensus 342 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n-~l~~~i~~~~~~~l~~L~~L~L~ 418 (840)
.+....+. ....++ ......+.+++ .++.++++++ .+.+.++. .+..+++|+.++++
T Consensus 231 -~l~~~~~~--------~~~~l~----------~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~~l~~L~~L~l~ 290 (570)
T 2z63_A 231 -RLVLGEFR--------NEGNLE----------KFDKSALEGLCNLTIEEFRLAYLDYYLDDIID-LFNCLTNVSSFSLV 290 (570)
T ss_dssp -EEEEEECC--------CCSSCE----------ECCTTTTGGGGGSEEEEEEEEETTEEESCSTT-TTGGGTTCSEEEEE
T ss_pred -eecccccc--------Cchhhh----------hcchhhhccccccchhhhhhhcchhhhhhchh-hhcCcCcccEEEec
Confidence 22111110 001111 01111111111 1344444444 33322222 34444444444444
Q ss_pred CcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccc
Q 003200 419 GNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGK 498 (840)
Q Consensus 419 ~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 498 (840)
+|.+. .+|.++..+ +|++|++++|++..... ..
T Consensus 291 ~~~l~-------------------------~l~~~~~~~-~L~~L~l~~n~~~~l~~----~~----------------- 323 (570)
T 2z63_A 291 SVTIE-------------------------RVKDFSYNF-GWQHLELVNCKFGQFPT----LK----------------- 323 (570)
T ss_dssp SCEEC-------------------------SCCBCCSCC-CCSEEEEESCBCSSCCB----CB-----------------
T ss_pred Cccch-------------------------hhhhhhccC-CccEEeeccCcccccCc----cc-----------------
Confidence 44332 122333333 44445444444432211 01
Q ss_pred cccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCC
Q 003200 499 ISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSY 578 (840)
Q Consensus 499 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 578 (840)
+++|+.|++++|.+.+..+. ..+
T Consensus 324 -------------------------------------------------------l~~L~~L~l~~n~~~~~~~~--~~~ 346 (570)
T 2z63_A 324 -------------------------------------------------------LKSLKRLTFTSNKGGNAFSE--VDL 346 (570)
T ss_dssp -------------------------------------------------------CSSCCEEEEESCBSCCBCCC--CBC
T ss_pred -------------------------------------------------------ccccCEEeCcCCcccccccc--ccC
Confidence 23344444444443333322 344
Q ss_pred CCcCEEEccCCcCCCCC--CcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccE
Q 003200 579 QNLKVLKLSNNKFSGNL--PNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLV 656 (840)
Q Consensus 579 ~~L~~L~Ls~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~ 656 (840)
++|++|++++|++++.. +..+..+++|++|++++|++.+..+ .+..+++|++|++++|.+.+..|......+++|++
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 55555555555554332 3445555666666666666654333 36666777777777777765555333336777777
Q ss_pred EEccCCcccccCCccccCccccceeeccccccc-ccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccC
Q 003200 657 LILRSNQFHGPLPKTICDLAFLQILDLADNNLS-GAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEI 735 (840)
Q Consensus 657 L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 735 (840)
|++++|.+.+..|..+..+++|+.|++++|+++ +.+|..+..+++| +.|++++|++++..
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L-------------------~~L~l~~n~l~~~~ 486 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-------------------TFLDLSQCQLEQLS 486 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-------------------CEEECTTSCCCEEC
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC-------------------CEEECCCCccccCC
Confidence 777777777777778888888888888888887 5678888777766 88999999999888
Q ss_pred cccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCc
Q 003200 736 LSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQ 785 (840)
Q Consensus 736 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 785 (840)
|..+.++++|++|++++|++++..|..|.++++|++|++++|++++..|.
T Consensus 487 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 88899999999999999999988888899999999999999999987764
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.4e-46 Score=430.11 Aligned_cols=199 Identities=23% Similarity=0.303 Sum_probs=129.7
Q ss_pred CcCEEEccCCcCCCCCCccc-CCCCcccEEEccCCcCcCCCC---cccccCCCCcEEeCCCCcccccCC--hhhhhccCC
Q 003200 580 NLKVLKLSNNKFSGNLPNSL-GSITSLVWLYLRKNRLSGKIP---ISLKNCTALASLDVDENEFVGNIP--TWFGERFSR 653 (840)
Q Consensus 580 ~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~ls~N~l~~~~p--~~~~~~l~~ 653 (840)
+|++|++++|++. .+|..+ ..+++|++|++++|++++.+| ..+..+++|++|++++|++++..+ ..+. .+++
T Consensus 311 ~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-~l~~ 388 (549)
T 2z81_A 311 KVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL-TLKN 388 (549)
T ss_dssp TCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGG-GCTT
T ss_pred cceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhh-cCCC
Confidence 3444444444443 223222 234444444444444443332 124445555555555555543221 1222 4566
Q ss_pred ccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccc
Q 003200 654 MLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSG 733 (840)
Q Consensus 654 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 733 (840)
|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|..+. ++|+.|++++|++++
T Consensus 389 L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~---------------------~~L~~L~Ls~N~l~~ 445 (549)
T 2z81_A 389 LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP---------------------QTLEVLDVSNNNLDS 445 (549)
T ss_dssp CCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC---------------------TTCSEEECCSSCCSC
T ss_pred CCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc---------------------CCceEEECCCCChhh
Confidence 666666666666 45666667777888888888776 4443321 234888999998886
Q ss_pred cCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCC
Q 003200 734 EILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPL 809 (840)
Q Consensus 734 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 809 (840)
.+ ..+++|++|+|++|+++ .+|. .+.+++|++|||++|++++.+|..+..+++|++|++++|++++..|.
T Consensus 446 ~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 446 FS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp CC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred hc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 43 57888999999999998 6776 57889999999999999988888899999999999999999988874
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.5e-45 Score=423.49 Aligned_cols=496 Identities=20% Similarity=0.229 Sum_probs=367.3
Q ss_pred CccccceecCCCCCCEEEEEcCCCCCCCCCccccccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCC
Q 003200 62 CCTWAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDT 141 (840)
Q Consensus 62 ~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n 141 (840)
.|.|.|+ |+.... -...+|+.+. ++|++|+|++|.+++. .|..++.+++|++|++++|
T Consensus 3 ~C~~~~~-c~~~~~------------------~l~~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n 60 (549)
T 2z81_A 3 SCDASGV-CDGRSR------------------SFTSIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSS 60 (549)
T ss_dssp EECTTSE-EECTTS------------------CCSSCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTS
T ss_pred cCCCCce-EECCCC------------------ccccccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCC
Confidence 4999998 863221 2234565554 7899999999999865 5778999999999999999
Q ss_pred cccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCC-CCcC
Q 003200 142 QFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCS-LHHF 220 (840)
Q Consensus 142 ~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~ 220 (840)
++++..|.+|+++++|++|++++|.+....+..|+++++|++|++++|++++.+ .+..++++++|++|++++|. +..+
T Consensus 61 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~ 139 (549)
T 2z81_A 61 RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG-VTSLFPNLTNLQTLRIGNVETFSEI 139 (549)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSC-SSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred CcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccc-hhhhhhccCCccEEECCCCcccccc
Confidence 999988899999999999999999999888888999999999999999998642 23467889999999999998 5555
Q ss_pred CCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccCccccccchhhhcCCCCcEEecccccCccccC
Q 003200 221 PTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRI 300 (840)
Q Consensus 221 ~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~ 300 (840)
++ ..+..+++|++|++++|.+.+..|..++.+++|++|++++|.+.......+..+++|++|++++ +.+.+..
T Consensus 140 ~~------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~ 212 (549)
T 2z81_A 140 RR------IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD-TNLARFQ 212 (549)
T ss_dssp CT------TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEES-CBCTTCC
T ss_pred CH------hhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccC-Ccccccc
Confidence 44 6789999999999999999999999999999999999999988743333456799999999999 5666532
Q ss_pred --c-ccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEccCCcccccC------ccccCCCCCCCEEEccCC
Q 003200 301 --P-RSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHL------TDQLGQFRNLVTLNLANN 371 (840)
Q Consensus 301 --~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~l~~l~~L~~L~L~~n 371 (840)
+ .....+++|+.|++++|.+.+..+..+..... ..++++.+++++|.+.+.. ...+..+++|+.|++.++
T Consensus 213 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 291 (549)
T 2z81_A 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLR-YILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291 (549)
T ss_dssp CCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGG-GCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESC
T ss_pred ccccchhhhhhcccceeccccccchhHHHHHHHHhh-hhccccccccccccccccccccccchhhhhhhccccccccccc
Confidence 1 22345788999999999988876665543221 1238889999988876632 123456778888888887
Q ss_pred cccccc-----cccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEecccccC
Q 003200 372 SIVGLI-----PESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYV 446 (840)
Q Consensus 372 ~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~ 446 (840)
.+.... +..+...++|++|++++|.+. .+|...+.++++|++|++++|++....+..
T Consensus 292 ~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~----------------- 353 (549)
T 2z81_A 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKN----------------- 353 (549)
T ss_dssp BCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHH-----------------
T ss_pred ccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccc-----------------
Confidence 765321 112233567888888888875 677655667888888888877766432110
Q ss_pred CCCCCccccCCCCCcEEEccCCCCCCCcc-hHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCC
Q 003200 447 GSRFPQWLHSQKHLQYLNLLNSRISDIFP-IRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLV 525 (840)
Q Consensus 447 ~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 525 (840)
+..+..+++|++|++++|++++..+ ...+..+++|++|++++|++++.+..+...++|++|++++|.++......
T Consensus 354 ----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~ 429 (549)
T 2z81_A 354 ----SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI 429 (549)
T ss_dssp ----HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTS
T ss_pred ----hhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchh
Confidence 1224566777788888887776643 23346677777777777777744334444445555555554443221111
Q ss_pred CCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcc
Q 003200 526 SSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSL 605 (840)
Q Consensus 526 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 605 (840)
.++|++|++++|++++.+ ..+++|++|++++|+++ .+|. ...+++|
T Consensus 430 ----------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L 475 (549)
T 2z81_A 430 ----------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVL 475 (549)
T ss_dssp ----------------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTC
T ss_pred ----------------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccC
Confidence 146777777777777542 46778888888888888 5555 4567889
Q ss_pred cEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCC
Q 003200 606 VWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIP 644 (840)
Q Consensus 606 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 644 (840)
++|++++|++++..|..+..+++|+.|++++|++.+..|
T Consensus 476 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 476 LVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 999999999988888888889999999999999888776
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.4e-44 Score=420.65 Aligned_cols=515 Identities=20% Similarity=0.223 Sum_probs=297.7
Q ss_pred CCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEc
Q 003200 107 HLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDL 186 (840)
Q Consensus 107 ~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 186 (840)
++++|||++|.|+++ .+..|.++++|++|+|++|+|++..|.+|+++++|++|+|++|+++...+.+|.++++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 567777777777643 2345666777777777777776666666666777777766666665555555555555555554
Q ss_pred cCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCC-CCcccccCCCCCcEEE
Q 003200 187 RSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNS-SIPDWLYKFSPLECLN 265 (840)
Q Consensus 187 s~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~ 265 (840)
++|++++ +++ ..|+.+++|++|++++|.+.+ ..|..++.+++|++|+
T Consensus 132 s~N~l~~--------------------------l~~------~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 179 (635)
T 4g8a_A 132 VETNLAS--------------------------LEN------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 179 (635)
T ss_dssp TTSCCCC--------------------------STT------CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred CCCcCCC--------------------------CCh------hhhhcCcccCeeccccCccccCCCchhhccchhhhhhc
Confidence 4444433 332 457777778888887777764 3566667777777777
Q ss_pred cccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEcc
Q 003200 266 LRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMR 345 (840)
Q Consensus 266 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 345 (840)
+++|.+++..+..+..+.+++. ....++++
T Consensus 180 L~~N~l~~~~~~~l~~L~~l~~--------------------------------------------------~~~~~~ls 209 (635)
T 4g8a_A 180 LSSNKIQSIYCTDLRVLHQMPL--------------------------------------------------LNLSLDLS 209 (635)
T ss_dssp CCSSCCCEECGGGGHHHHTCTT--------------------------------------------------CCCEEECT
T ss_pred ccCccccccccccccchhhhhh--------------------------------------------------hhhhhhcc
Confidence 7777776655555544333221 12233333
Q ss_pred CCcccccCccccCCCCCCCEEEccCCcccc-cccccccCCCCCCEEEccCCccccc-----cChhhhccCCCCCEEEccC
Q 003200 346 SSSIYGHLTDQLGQFRNLVTLNLANNSIVG-LIPESFGQLSTLRELQIYDNKLNGT-----LSEFHFANLTKLSWFRVGG 419 (840)
Q Consensus 346 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~-----i~~~~~~~l~~L~~L~L~~ 419 (840)
.|.+....+..+ ....++.+++.+|.... ..+..+..+..++...+..+..... .....+..+..+..
T Consensus 210 ~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~----- 283 (635)
T 4g8a_A 210 LNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI----- 283 (635)
T ss_dssp TCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEE-----
T ss_pred cCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhh-----
Confidence 333333222222 22345556666654432 2233455566665555433322110 01111122222222
Q ss_pred cccceeccCCCCCccCccEEecccccCCC---CCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccc
Q 003200 420 NQLTFEVKHDWIPPFQLVALGLHNCYVGS---RFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFH 496 (840)
Q Consensus 420 n~l~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~ 496 (840)
..+..+.... .....+....+++.+++.++.+....+
T Consensus 284 -------------------~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--------------------- 323 (635)
T 4g8a_A 284 -------------------EEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--------------------- 323 (635)
T ss_dssp -------------------EEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG---------------------
T ss_pred -------------------hhhhhhhhcccccchhhhhhhhcccccccccccccccccc---------------------
Confidence 2222111110 111222333444444444444333222
Q ss_pred cccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCcccc
Q 003200 497 GKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWM 576 (840)
Q Consensus 497 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 576 (840)
+.....++.|++.+|.+.+..+..+ +.|+.++++.|...... ...
T Consensus 324 -----~~~~~~L~~L~l~~~~~~~~~~~~l----------------------------~~L~~l~l~~n~~~~~~--~~~ 368 (635)
T 4g8a_A 324 -----FSYNFGWQHLELVNCKFGQFPTLKL----------------------------KSLKRLTFTSNKGGNAF--SEV 368 (635)
T ss_dssp -----GGSCCCCSEEEEESCEESSCCCCBC----------------------------TTCCEEEEESCCSCCBC--CCC
T ss_pred -----cccchhhhhhhcccccccCcCcccc----------------------------hhhhhcccccccCCCCc--ccc
Confidence 2222333444444443333322223 34445555555443221 223
Q ss_pred CCCCcCEEEccCCcCCC--CCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCc
Q 003200 577 SYQNLKVLKLSNNKFSG--NLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRM 654 (840)
Q Consensus 577 ~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L 654 (840)
.+++|+.|++++|.+.. ..+..+..+.+|+.+++..|.+. ..+..+..+++|+.+++++|......+...+..+.++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccccccc
Confidence 45566666666665542 23334445566666666666655 3344566667777777777766665555545567777
Q ss_pred cEEEccCCcccccCCccccCccccceeeccccccc-ccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccc
Q 003200 655 LVLILRSNQFHGPLPKTICDLAFLQILDLADNNLS-GAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSG 733 (840)
Q Consensus 655 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 733 (840)
+.++++.|.+.+..+..+..+++|+.|++++|++. +..|..+..+++| ++|||++|++++
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L-------------------~~L~Ls~N~L~~ 508 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-------------------TFLDLSQCQLEQ 508 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-------------------CEEECTTSCCCE
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc-------------------CEEECCCCccCC
Confidence 77777777777777777777888888888888744 3456677776666 788888888888
Q ss_pred cCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCC-CCCCeEeccCCcccc
Q 003200 734 EILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSL-TFLNHLNLSNNNLTG 805 (840)
Q Consensus 734 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g 805 (840)
.+|..|+++++|++|+|++|++++..|..|+.+++|++|||++|++++..|+.+..+ ++|++|++++|+++.
T Consensus 509 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 509 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 888888888888888888888887778888888888888888888888888888877 578888888888764
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.7e-45 Score=413.86 Aligned_cols=463 Identities=19% Similarity=0.215 Sum_probs=241.3
Q ss_pred EEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccCccccccchhhhcCCCCcEE
Q 003200 209 ELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWL 288 (840)
Q Consensus 209 ~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 288 (840)
+|++++|.++.+|. .+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..+..+++|++|
T Consensus 4 ~l~ls~n~l~~ip~-------~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 74 (520)
T 2z7x_B 4 LVDRSKNGLIHVPK-------DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYL 74 (520)
T ss_dssp EEECTTSCCSSCCC-------SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred eEecCCCCcccccc-------ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEE
Confidence 45566666555442 222 667777777777776666667777777777777777776666667777777777
Q ss_pred ecccccCccccCcccccCCCCCcEEEcCCCcccc-cchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCCCC--CE
Q 003200 289 DLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQ-EISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNL--VT 365 (840)
Q Consensus 289 ~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~ 365 (840)
++++ +.+. .+|.. .+++|++|++++|.+.+ .+|..+..++ +|++|++++|.+.+ ..+..+++| ++
T Consensus 75 ~Ls~-N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~-----~L~~L~L~~n~l~~---~~~~~l~~L~L~~ 142 (520)
T 2z7x_B 75 DLSH-NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMS-----QLKFLGLSTTHLEK---SSVLPIAHLNISK 142 (520)
T ss_dssp ECCS-SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCT-----TCCEEEEEESSCCG---GGGGGGTTSCEEE
T ss_pred ecCC-Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCC-----cceEEEecCcccch---hhccccccceeeE
Confidence 7776 3444 34433 45555555555555443 2333333333 44444444444433 123333344 55
Q ss_pred EEccCCcc--cccccccccCCC-CCCEEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEecc
Q 003200 366 LNLANNSI--VGLIPESFGQLS-TLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLH 442 (840)
Q Consensus 366 L~L~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 442 (840)
|++++|.+ .+..|..+..+. ....+++++|.+.+.++...+.++++|+.+++++|.......
T Consensus 143 L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--------------- 207 (520)
T 2z7x_B 143 VLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS--------------- 207 (520)
T ss_dssp EEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH---------------
T ss_pred EEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc---------------
Confidence 55555554 444444443332 122334444444444443334444444444443332000000
Q ss_pred cccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCC
Q 003200 443 NCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPL 522 (840)
Q Consensus 443 ~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 522 (840)
.+.+..+ .+..+++|+.|++++|.+++.....+..
T Consensus 208 --~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~------------------------------------------ 242 (520)
T 2z7x_B 208 --YFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQ------------------------------------------ 242 (520)
T ss_dssp --HHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHH------------------------------------------
T ss_pred --eeecchh-hhccccchhhccccccccCHHHHHHHHH------------------------------------------
Confidence 0000111 2333333444443333332211111100
Q ss_pred CCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccc-----cCCCCcCEEEccCCcCCCCCC-
Q 003200 523 PLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCW-----MSYQNLKVLKLSNNKFSGNLP- 596 (840)
Q Consensus 523 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~- 596 (840)
.. ..++|++|++++|.+++.+|..+ ..+++|+.+++++|.+ .+|
T Consensus 243 ---------------------------~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~ 292 (520)
T 2z7x_B 243 ---------------------------LV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQ 292 (520)
T ss_dssp ---------------------------HH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCT
T ss_pred ---------------------------Hh-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecch
Confidence 00 01234444444444444444433 4444444444444444 222
Q ss_pred cccCCC---CcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccc--cCCcc
Q 003200 597 NSLGSI---TSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHG--PLPKT 671 (840)
Q Consensus 597 ~~l~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~--~~p~~ 671 (840)
..+..+ .+|+.|++++|.+.... .+..+++|++|++++|++++.+|.++. .+++|++|++++|++++ .+|..
T Consensus 293 ~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~ 369 (520)
T 2z7x_B 293 SYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEM 369 (520)
T ss_dssp HHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHH
T ss_pred hhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCccccchHH
Confidence 222222 33455555554443211 113445555555555555544454443 45555555555555554 33455
Q ss_pred ccCccccceeecccccccccCCcc-ccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeC
Q 003200 672 ICDLAFLQILDLADNNLSGAIPKC-ISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINF 750 (840)
Q Consensus 672 l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 750 (840)
+..+++|++|++++|++++.+|.. +..+++| +.|++++|++++.+|..+. ++|+.|++
T Consensus 370 ~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L-------------------~~L~Ls~N~l~~~~~~~l~--~~L~~L~L 428 (520)
T 2z7x_B 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL-------------------LSLNMSSNILTDTIFRCLP--PRIKVLDL 428 (520)
T ss_dssp HTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC-------------------CEEECCSSCCCGGGGGSCC--TTCCEEEC
T ss_pred HhhCCCCCEEECCCCcCCcccccchhccCccC-------------------CEEECcCCCCCcchhhhhc--ccCCEEEC
Confidence 666777777777777777545543 4444444 7778888877777666654 67888888
Q ss_pred CCCcccccCCcchhccCCCCeEeCCCCcccccCCcc-ccCCCCCCeEeccCCcccccCC
Q 003200 751 SFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQS-MSSLTFLNHLNLSNNNLTGKIP 808 (840)
Q Consensus 751 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip 808 (840)
++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++++..|
T Consensus 429 s~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 429 HSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 888888 77777778888888888888888 46655 7888888888888888887654
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.1e-44 Score=409.30 Aligned_cols=467 Identities=21% Similarity=0.240 Sum_probs=285.9
Q ss_pred CEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccC
Q 003200 109 SYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRS 188 (840)
Q Consensus 109 ~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~ 188 (840)
++||+++|.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+....+..|.++++|++|++++
T Consensus 3 ~~l~ls~n~l~--~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI--HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS--SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc--ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 56788888887 4666655 7888888888888777667788888888888888888777777788888888888888
Q ss_pred cCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCC--cEEEc
Q 003200 189 VNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPL--ECLNL 266 (840)
Q Consensus 189 n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L--~~L~L 266 (840)
|+++.++.. .+++|++|++++|.+++.+ +|..++.+++|++|++++|.+.+ ..+..+++| ++|++
T Consensus 79 N~l~~lp~~-----~l~~L~~L~L~~N~l~~~~-----~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 79 NKLVKISCH-----PTVNLKHLDLSFNAFDALP-----ICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLL 145 (520)
T ss_dssp SCCCEEECC-----CCCCCSEEECCSSCCSSCC-----CCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEE
T ss_pred CceeecCcc-----ccCCccEEeccCCcccccc-----chhhhccCCcceEEEecCcccch---hhccccccceeeEEEe
Confidence 877765432 6777888888888776642 23678888888888888888765 346666666 88888
Q ss_pred ccCcc--ccccchhhhcCC-CCcEEecccccCccccC-cccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEE
Q 003200 267 RNNSL--QGTISDAIGNLT-SVSWLDLSINIGLQGRI-PRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESL 342 (840)
Q Consensus 267 ~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L 342 (840)
++|.+ .+..|..+..+. +...+++++| ...+.+ +..+..+++|+.+++++|........
T Consensus 146 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~---------------- 208 (520)
T 2z7x_B 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTN-KEFHFILDVSVKTVANLELSNIKCVLEDNKCSY---------------- 208 (520)
T ss_dssp EECTTTTSSCCTTTTTTCCEEEEEEECCSS-SCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH----------------
T ss_pred ecccccccccccccccccccceEEEEeccC-cchhhhhhhhhhcccceeeccccccccccccce----------------
Confidence 88887 667777766665 2334555663 333333 34566677777777776651111111
Q ss_pred EccCCcccccCccccCCCCCCCEEEccCCccccccccccc---CCCCCCEEEccCCccccccChhhh----ccCCCCCEE
Q 003200 343 DMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFG---QLSTLRELQIYDNKLNGTLSEFHF----ANLTKLSWF 415 (840)
Q Consensus 343 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~i~~~~~----~~l~~L~~L 415 (840)
+.+.++ .++.+++|++|++++|.+.+..+..+. ..++|++|++++|.+.|.+|...+ ..+++|+.+
T Consensus 209 ------~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l 281 (520)
T 2z7x_B 209 ------FLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH 281 (520)
T ss_dssp ------HHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEE
T ss_pred ------eecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEec
Confidence 122222 355566677777766666543222211 135777777777777766665322 555555554
Q ss_pred EccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCccc
Q 003200 416 RVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQF 495 (840)
Q Consensus 416 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l 495 (840)
++++|.+. .....+...+
T Consensus 282 ~l~~n~~~-------------------------------------------------~p~~~~~~~~------------- 299 (520)
T 2z7x_B 282 QVVSDVFG-------------------------------------------------FPQSYIYEIF------------- 299 (520)
T ss_dssp EEEECCCC-------------------------------------------------SCTHHHHHHH-------------
T ss_pred ccccccee-------------------------------------------------cchhhhhccc-------------
Confidence 44443321 0001110000
Q ss_pred ccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccc
Q 003200 496 HGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCW 575 (840)
Q Consensus 496 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 575 (840)
..++|+.|++++|.+.+.. .+
T Consensus 300 ---------------------------------------------------------~~~~L~~L~l~~n~l~~~~--~~ 320 (520)
T 2z7x_B 300 ---------------------------------------------------------SNMNIKNFTVSGTRMVHML--CP 320 (520)
T ss_dssp ---------------------------------------------------------HTCCCSEEEEESSCCCCCC--CC
T ss_pred ---------------------------------------------------------ccCceeEEEcCCCcccccc--ch
Confidence 0123444444444443211 11
Q ss_pred cCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcC--CCCcccccCCCCcEEeCCCCcccccCChhhhhccCC
Q 003200 576 MSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSG--KIPISLKNCTALASLDVDENEFVGNIPTWFGERFSR 653 (840)
Q Consensus 576 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~ 653 (840)
..+++|++|++++|++++..|..++.+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~------- 393 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG------- 393 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC-------
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc-------
Confidence 345556666666666665555556666666666666666654 33445555666666666666655434432
Q ss_pred ccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccc
Q 003200 654 MLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSG 733 (840)
Q Consensus 654 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 733 (840)
.+..+++|+.|++++|++++.+|..+. ++| +.|++++|+++
T Consensus 394 -----------------~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L-------------------~~L~Ls~N~l~- 434 (520)
T 2z7x_B 394 -----------------DCSWTKSLLSLNMSSNILTDTIFRCLP--PRI-------------------KVLDLHSNKIK- 434 (520)
T ss_dssp -----------------SCCCCTTCCEEECCSSCCCGGGGGSCC--TTC-------------------CEEECCSSCCC-
T ss_pred -----------------hhccCccCCEEECcCCCCCcchhhhhc--ccC-------------------CEEECCCCccc-
Confidence 233455566666666666555554432 233 67777777777
Q ss_pred cCcccccCCCCCCeEeCCCCcccccCCcc-hhccCCCCeEeCCCCcccccCC
Q 003200 734 EILSEVTNLKALQSINFSFNTFTGRIPES-IGTMRALESVDFSVNQLSGEIP 784 (840)
Q Consensus 734 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p 784 (840)
.+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++++..+
T Consensus 435 ~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 435 SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 67777778888888888888888 45554 7788888888888888876543
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.1e-42 Score=407.64 Aligned_cols=138 Identities=20% Similarity=0.129 Sum_probs=112.0
Q ss_pred CCEEEEEcCCCCCCCCCccccccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCC
Q 003200 75 GHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNL 154 (840)
Q Consensus 75 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l 154 (840)
..+++|||+++ .+.+..+.+|.++++|++|||++|.++++ .|..|+.+++|++|+|++|++++..+..|.++
T Consensus 52 ~~~~~LdLs~N-------~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L 123 (635)
T 4g8a_A 52 FSTKNLDLSFN-------PLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 123 (635)
T ss_dssp TTCCEEECTTS-------CCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred cCCCEEEeeCC-------CCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence 46899999997 66655567899999999999999999964 45678999999999999999998777889999
Q ss_pred CCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCC
Q 003200 155 SDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFP 221 (840)
Q Consensus 155 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 221 (840)
++|++|++++|++.......|+++++|++|++++|.+...+ .+..++.+++|++|++++|.+++.+
T Consensus 124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCC-CchhhccchhhhhhcccCccccccc
Confidence 99999999999999888888999999999999999887642 1233444555555555555555443
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.8e-44 Score=417.00 Aligned_cols=367 Identities=18% Similarity=0.274 Sum_probs=237.6
Q ss_pred CCcccccCccccCCCCCCCEEEccCCccccc-----------------cccccc--CCCCCCEEEccCCccccccChhhh
Q 003200 346 SSSIYGHLTDQLGQFRNLVTLNLANNSIVGL-----------------IPESFG--QLSTLRELQIYDNKLNGTLSEFHF 406 (840)
Q Consensus 346 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~~~~l~--~l~~L~~L~L~~n~l~~~i~~~~~ 406 (840)
.|++++ +|..++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.+|. .+
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l 269 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FL 269 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT-TT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH-HH
Confidence 455556 566666666666666666666664 566666 666666666666666666664 56
Q ss_pred ccCCCCCEEEccCcc-cce-eccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCC
Q 003200 407 ANLTKLSWFRVGGNQ-LTF-EVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQ 484 (840)
Q Consensus 407 ~~l~~L~~L~L~~n~-l~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~ 484 (840)
.++++|++|++++|+ +++ ..+..+..+ ..+..+++|++|++++|+++.+.....+..+++
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L------------------~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~ 331 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQAL------------------ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK 331 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHH------------------HHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTT
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhh------------------hccccCCCCCEEECCCCcCCccCchhhhccCCC
Confidence 666666666666665 543 222211111 001223566666666666663322112233333
Q ss_pred ccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccC
Q 003200 485 LKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTD 564 (840)
Q Consensus 485 L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 564 (840)
|++|++++|.+.|. +| .+..+++|++|++++
T Consensus 332 L~~L~L~~N~l~g~--------------------------------------------ip-----~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 332 LGMLECLYNQLEGK--------------------------------------------LP-----AFGSEIKLASLNLAY 362 (636)
T ss_dssp CCEEECCSCCCEEE--------------------------------------------CC-----CCEEEEEESEEECCS
T ss_pred CCEEeCcCCcCccc--------------------------------------------hh-----hhCCCCCCCEEECCC
Confidence 44433333333322 22 122346777777777
Q ss_pred CcCccccCccccCCCC-cCEEEccCCcCCCCCCcccCCCC--cccEEEccCCcCcCCCCcccc-------cCCCCcEEeC
Q 003200 565 NYLQGEIPDCWMSYQN-LKVLKLSNNKFSGNLPNSLGSIT--SLVWLYLRKNRLSGKIPISLK-------NCTALASLDV 634 (840)
Q Consensus 565 n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~p~~l~-------~l~~L~~L~l 634 (840)
|.++ .+|..+..+++ |++|++++|+++ .+|..+.... +|++|++++|++++..|..+. .+++|++|++
T Consensus 363 N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L 440 (636)
T 4eco_A 363 NQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440 (636)
T ss_dssp SEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred Cccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence 7777 66777777777 888888888887 6676666544 778888888888777777666 5556666666
Q ss_pred CCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccc
Q 003200 635 DENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVY 714 (840)
Q Consensus 635 s~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 714 (840)
++|+++ .+|..++..+ ++|+.|++++|+++ .+|..+..... ..
T Consensus 441 s~N~l~-~lp~~~~~~l------------------------~~L~~L~Ls~N~l~-~i~~~~~~~~~-----------~~ 483 (636)
T 4eco_A 441 SNNQIS-KFPKELFSTG------------------------SPLSSINLMGNMLT-EIPKNSLKDEN-----------EN 483 (636)
T ss_dssp CSSCCC-SCCTHHHHTT------------------------CCCSEEECCSSCCS-BCCSSSSEETT-----------EE
T ss_pred cCCccC-cCCHHHHccC------------------------CCCCEEECCCCCCC-CcCHHHhcccc-----------cc
Confidence 666665 4555444334 44555555555554 33332211100 00
Q ss_pred cccCCcceEEeCCCCcccccCccccc--CCCCCCeEeCCCCcccccCCcchhccCCCCeEeC------CCCcccccCCcc
Q 003200 715 REILPLVSLLDISRNNFSGEILSEVT--NLKALQSINFSFNTFTGRIPESIGTMRALESVDF------SVNQLSGEIPQS 786 (840)
Q Consensus 715 ~~~~~~L~~L~Ls~N~l~~~~~~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~~p~~ 786 (840)
...+++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..++++++|++|++ ++|++.+.+|..
T Consensus 484 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~ 561 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561 (636)
T ss_dssp CTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT
T ss_pred ccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHH
Confidence 001224499999999999 7888887 99999999999999997 9999999999999999 568889999999
Q ss_pred ccCCCCCCeEeccCCcccccCCCCCcCCCcCcCCCCCC
Q 003200 787 MSSLTFLNHLNLSNNNLTGKIPLSTQLQSFNASSFAGN 824 (840)
Q Consensus 787 l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn 824 (840)
+..+++|++|++++|++ +.||..- +..+....+.+|
T Consensus 562 l~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N 597 (636)
T 4eco_A 562 ITLCPSLTQLQIGSNDI-RKVNEKI-TPNISVLDIKDN 597 (636)
T ss_dssp GGGCSSCCEEECCSSCC-CBCCSCC-CTTCCEEECCSC
T ss_pred HhcCCCCCEEECCCCcC-CccCHhH-hCcCCEEECcCC
Confidence 99999999999999999 8899762 245555555666
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.8e-43 Score=410.13 Aligned_cols=355 Identities=19% Similarity=0.279 Sum_probs=229.4
Q ss_pred CcccccCccccCCCCCCCEEEccCCcccc-----------------ccccccc--CCCCCCEEEccCCccccccChhhhc
Q 003200 347 SSIYGHLTDQLGQFRNLVTLNLANNSIVG-----------------LIPESFG--QLSTLRELQIYDNKLNGTLSEFHFA 407 (840)
Q Consensus 347 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----------------~~~~~l~--~l~~L~~L~L~~n~l~~~i~~~~~~ 407 (840)
|++++ +|..++++++|++|+|++|.+++ .+|..++ ++++|++|++++|.+.+.+|. .+.
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~ 512 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLY 512 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH-HHh
Confidence 66666 67777777777777777777776 2666666 777888888888777777775 677
Q ss_pred cCCCCCEEEccCcc-cce-eccC-------CCCCccCccEEecccccCCCCCCc--cccCCCCCcEEEccCCCCCCCcch
Q 003200 408 NLTKLSWFRVGGNQ-LTF-EVKH-------DWIPPFQLVALGLHNCYVGSRFPQ--WLHSQKHLQYLNLLNSRISDIFPI 476 (840)
Q Consensus 408 ~l~~L~~L~L~~n~-l~~-~~~~-------~~~~~~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~Ls~n~i~~~~~~ 476 (840)
++++|+.|++++|+ +++ ..+. .+..+++|+.|++++|.+. .+|. .+..+++|++|++++|+++ .+|
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp- 589 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE- 589 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-
Confidence 77888888888776 665 3433 2334458888888888888 7777 8999999999999999887 333
Q ss_pred HHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCc
Q 003200 477 RFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKS 556 (840)
Q Consensus 477 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~ 556 (840)
. +..+ ++
T Consensus 590 ~-~~~L------------------------------------------------------------------------~~ 596 (876)
T 4ecn_A 590 A-FGTN------------------------------------------------------------------------VK 596 (876)
T ss_dssp C-CCTT------------------------------------------------------------------------SE
T ss_pred h-hcCC------------------------------------------------------------------------Cc
Confidence 1 1223 34
Q ss_pred ccEEeccCCcCccccCccccCCCC-cCEEEccCCcCCCCCCcccCCCCc--ccEEEccCCcCcCCCCcc---cc--cCCC
Q 003200 557 LEGLKLTDNYLQGEIPDCWMSYQN-LKVLKLSNNKFSGNLPNSLGSITS--LVWLYLRKNRLSGKIPIS---LK--NCTA 628 (840)
Q Consensus 557 L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~p~~---l~--~l~~ 628 (840)
|+.|++++|.++ .+|..+..+++ |++|++++|+++ .+|..+..+.. |+.|++++|++.+.+|.. +. .+++
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 444444444444 34444444444 444444444444 34444433322 555555555544433321 11 2235
Q ss_pred CcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCcccc--------CccccceeecccccccccCCcccc--c
Q 003200 629 LASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTIC--------DLAFLQILDLADNNLSGAIPKCIS--N 698 (840)
Q Consensus 629 L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~--------~l~~L~~L~Ls~N~l~~~~p~~~~--~ 698 (840)
|+.|++++|+++ .+|..++..+++|+.|++++|+++ .+|..+. ++++|+.|+|++|+++ .+|..+. .
T Consensus 675 L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~ 751 (876)
T 4ecn_A 675 ASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT 751 (876)
T ss_dssp EEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred cCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc
Confidence 555555555555 455554444555555555555555 3333222 2337777777777777 6666554 5
Q ss_pred cccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCC------CcccccCCcchhccCCCCeE
Q 003200 699 LTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSF------NTFTGRIPESIGTMRALESV 772 (840)
Q Consensus 699 l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~------N~l~~~~p~~l~~l~~L~~L 772 (840)
+++| +.|+|++|++++ +|..+.++++|+.|+|++ |++.+.+|..|+++++|+.|
T Consensus 752 l~~L-------------------~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L 811 (876)
T 4ecn_A 752 LPYL-------------------SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811 (876)
T ss_dssp CTTC-------------------CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred CCCc-------------------CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEE
Confidence 5444 777777777775 677777777777777765 77888888888888889999
Q ss_pred eCCCCcccccCCccccCCCCCCeEeccCCcccccC
Q 003200 773 DFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKI 807 (840)
Q Consensus 773 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i 807 (840)
+|++|++ +.+|..+. ++|+.|+|++|++...-
T Consensus 812 ~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 812 QIGSNDI-RKVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp ECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred ECCCCCC-CccCHhhc--CCCCEEECCCCCCCccC
Confidence 9998888 68888766 58888999988876543
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.5e-42 Score=393.82 Aligned_cols=161 Identities=20% Similarity=0.326 Sum_probs=99.7
Q ss_pred cCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCccccc--CCccccCccccceeecccccccccCCc-ccccccc
Q 003200 625 NCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGP--LPKTICDLAFLQILDLADNNLSGAIPK-CISNLTG 701 (840)
Q Consensus 625 ~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~ 701 (840)
.+++|++|++++|++++.+|..+. .+++|++|++++|++++. +|..+..+++|+.|++++|++++.+|. .+..+++
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred CCCCceEEECCCCccccchhhhhc-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 344444444444444444444443 344455555555544432 234455666677777777776654444 2444444
Q ss_pred CcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccc
Q 003200 702 MVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSG 781 (840)
Q Consensus 702 L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 781 (840)
| +.|++++|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 430 L-------------------~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~- 486 (562)
T 3a79_B 430 I-------------------LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK- 486 (562)
T ss_dssp C-------------------CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-
T ss_pred C-------------------CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-
Confidence 4 6777777777766665544 57777777777777 66766667778888888888877
Q ss_pred cCCcc-ccCCCCCCeEeccCCcccccCCC
Q 003200 782 EIPQS-MSSLTFLNHLNLSNNNLTGKIPL 809 (840)
Q Consensus 782 ~~p~~-l~~l~~L~~L~ls~N~l~g~ip~ 809 (840)
.+|.. +..+++|++|++++|++.+..|.
T Consensus 487 ~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 487 SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 45555 77777888888888887776553
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.5e-41 Score=385.54 Aligned_cols=462 Identities=22% Similarity=0.274 Sum_probs=245.9
Q ss_pred CEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccC
Q 003200 109 SYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRS 188 (840)
Q Consensus 109 ~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~ 188 (840)
+++|+++|.++ .+|..+. ++|++|++++|.+++..|.+|.++++|++|++++|.++...+..|.++++|++|++++
T Consensus 34 ~~l~ls~~~L~--~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLT--HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCC--SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCc--cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 55555555555 2444332 5566666666665555555556666666666666655555555556666666666666
Q ss_pred cCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCC--cEEEc
Q 003200 189 VNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPL--ECLNL 266 (840)
Q Consensus 189 n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L--~~L~L 266 (840)
|+++.++.. .+++|++|++++|.+++.+. |..++++++|++|++++|.+.+. .+..+++| ++|++
T Consensus 110 N~l~~lp~~-----~l~~L~~L~Ls~N~l~~l~~-----p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L 176 (562)
T 3a79_B 110 NRLQNISCC-----PMASLRHLDLSFNDFDVLPV-----CKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILL 176 (562)
T ss_dssp SCCCEECSC-----CCTTCSEEECCSSCCSBCCC-----CGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEE
T ss_pred CcCCccCcc-----ccccCCEEECCCCCccccCc-----hHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEe
Confidence 665544332 46666666666666665431 25677777777777777776653 23334444 77777
Q ss_pred ccCcc--ccccchhhhcCC--CCcEEecccccCccccCc-ccccCCCCCcEEEcCCCccc-ccchHHHHhhccCCCCCCC
Q 003200 267 RNNSL--QGTISDAIGNLT--SVSWLDLSINIGLQGRIP-RSMANFCNLKSVNLRGVHLS-QEISEILDIFSGCVSNGLE 340 (840)
Q Consensus 267 ~~n~l--~~~~~~~l~~l~--~L~~L~L~~n~~~~~~~~-~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~L~ 340 (840)
++|.+ ++..|..+..+. .+ .++++. +.+.+.++ ..+..+++|+.+++++|... ..++..+
T Consensus 177 ~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~-n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~------------ 242 (562)
T 3a79_B 177 DLVSYHIKGGETESLQIPNTTVL-HLVFHP-NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL------------ 242 (562)
T ss_dssp EESSCCCCSSSCCEEEECCEEEE-EEEECS-SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH------------
T ss_pred ecccccccccCcccccccCcceE-EEEecC-ccchhhhhhhcccccceEEEecccccccccchHHHHH------------
Confidence 77777 666666665544 22 345555 33333333 33556666777777666421 0111111
Q ss_pred EEEccCCcccccCccccCCCCCCCEEEccCCcccccc----cccccCCCCCCEEEccCCccccccChhhh----ccCCCC
Q 003200 341 SLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLI----PESFGQLSTLRELQIYDNKLNGTLSEFHF----ANLTKL 412 (840)
Q Consensus 341 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~i~~~~~----~~l~~L 412 (840)
..+..+++|+.+++.++.+.+.. +..+ ..++|++|++++|.+.|.+|...| .+++.|
T Consensus 243 --------------~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L 307 (562)
T 3a79_B 243 --------------SELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSL 307 (562)
T ss_dssp --------------HHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEE
T ss_pred --------------HHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchhe
Confidence 12333445555555554443221 1111 234677777777777766665332 233333
Q ss_pred CEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccC
Q 003200 413 SWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGL 492 (840)
Q Consensus 413 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~ 492 (840)
+.+++..+.+ ......+...+
T Consensus 308 ~~~~~~~~~~-------------------------------------------------~~p~~~~~~~~---------- 328 (562)
T 3a79_B 308 MIEHVKNQVF-------------------------------------------------LFSKEALYSVF---------- 328 (562)
T ss_dssp EEEEEEECCC-------------------------------------------------SSCHHHHHHHH----------
T ss_pred ehhhccccee-------------------------------------------------ecChhhhhhhh----------
Confidence 2222222211 00001110000
Q ss_pred cccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccC
Q 003200 493 NQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIP 572 (840)
Q Consensus 493 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 572 (840)
...+|++|++++|.+....
T Consensus 329 ------------------------------------------------------------~~~~L~~L~l~~n~~~~~~- 347 (562)
T 3a79_B 329 ------------------------------------------------------------AEMNIKMLSISDTPFIHMV- 347 (562)
T ss_dssp ------------------------------------------------------------HTCCCSEEEEESSCCCCCC-
T ss_pred ------------------------------------------------------------ccCcceEEEccCCCccccc-
Confidence 0123444444444443211
Q ss_pred ccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCC--CCcccccCCCCcEEeCCCCcccccCChhhhhc
Q 003200 573 DCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGK--IPISLKNCTALASLDVDENEFVGNIPTWFGER 650 (840)
Q Consensus 573 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~ 650 (840)
....+++|++|++++|++++..|..++.+++|++|++++|++++. +|..+.++++|++|++++|++++.+|..
T Consensus 348 -~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~---- 422 (562)
T 3a79_B 348 -CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR---- 422 (562)
T ss_dssp -CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC----
T ss_pred -CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh----
Confidence 113455566666666666555555555556666666666655532 2334555555555555555555434432
Q ss_pred cCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCc
Q 003200 651 FSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNN 730 (840)
Q Consensus 651 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~ 730 (840)
.+..+++|+.|++++|++++.+|..+. ++| +.|++++|+
T Consensus 423 --------------------~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L-------------------~~L~L~~N~ 461 (562)
T 3a79_B 423 --------------------TCAWAESILVLNLSSNMLTGSVFRCLP--PKV-------------------KVLDLHNNR 461 (562)
T ss_dssp --------------------CCCCCTTCCEEECCSSCCCGGGGSSCC--TTC-------------------SEEECCSSC
T ss_pred --------------------hhcCcccCCEEECCCCCCCcchhhhhc--CcC-------------------CEEECCCCc
Confidence 233445555556666655554444332 233 667777777
Q ss_pred ccccCcccccCCCCCCeEeCCCCcccccCCcc-hhccCCCCeEeCCCCcccccCC
Q 003200 731 FSGEILSEVTNLKALQSINFSFNTFTGRIPES-IGTMRALESVDFSVNQLSGEIP 784 (840)
Q Consensus 731 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p 784 (840)
++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++.+..|
T Consensus 462 l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 462 IM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred Cc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 76 56666667777888888888887 45554 7778888888888888876544
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.8e-40 Score=347.81 Aligned_cols=293 Identities=30% Similarity=0.491 Sum_probs=209.4
Q ss_pred CCcHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCcc--ccceecCCCC--CCEEEEEcCCCCCCCCCccccc--ccccccc
Q 003200 30 GCLETERRALLRFKQDLQDPSNRLASWTGDGDCCT--WAGVACGNVT--GHILELNLRNPSTSNPRSMLVG--KVNPALL 103 (840)
Q Consensus 30 ~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~~~--~~~~~~~ 103 (840)
.|.++|++||++||+++.||. .+++|..+.+||. |+||+|+..+ ++|++|+++++ .+.| .+|+.+.
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~-------~l~~~~~~~~~l~ 73 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL-------NLPKPYPIPSSLA 73 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC-------CCSSCEECCGGGG
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCC-------CccCCcccChhHh
Confidence 599999999999999998886 7899987889998 9999998655 89999999997 6777 7888888
Q ss_pred CCCCCCEEeCCC-CCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCC
Q 003200 104 DLKHLSYLDLSS-NDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLE 182 (840)
Q Consensus 104 ~l~~L~~L~Ls~-n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~ 182 (840)
++++|++|++++ |.+.+. +|..++.+++|++|++++|.+++.+|..|.++++|++|++++|.+....+
T Consensus 74 ~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p---------- 142 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP---------- 142 (313)
T ss_dssp GCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC----------
T ss_pred CCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCC----------
Confidence 999999999985 888764 78888888899999998888888888888888888888887776543222
Q ss_pred EEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCC-CC
Q 003200 183 HLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFS-PL 261 (840)
Q Consensus 183 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L 261 (840)
..+..+++|++|++++|.+++.+|..+..++ +|
T Consensus 143 ----------------------------------------------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L 176 (313)
T 1ogq_A 143 ----------------------------------------------PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176 (313)
T ss_dssp ----------------------------------------------GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred ----------------------------------------------hHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC
Confidence 4455566666666666666666666666665 66
Q ss_pred cEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCE
Q 003200 262 ECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLES 341 (840)
Q Consensus 262 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 341 (840)
++|++++|.+++.+|..+..++ |++|++++ +.+.+..|..+..+++|+.|++++|.+.+.++.
T Consensus 177 ~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------------- 239 (313)
T 1ogq_A 177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSR-NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--------------- 239 (313)
T ss_dssp CEEECCSSEEEEECCGGGGGCC-CSEEECCS-SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG---------------
T ss_pred cEEECcCCeeeccCChHHhCCc-ccEEECcC-CcccCcCCHHHhcCCCCCEEECCCCceeeecCc---------------
Confidence 7777777766666666666665 66666666 455556666666666666666666555443322
Q ss_pred EEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcc
Q 003200 342 LDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQ 421 (840)
Q Consensus 342 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~ 421 (840)
+..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|.. ..+++|+.+++++|+
T Consensus 240 ---------------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 240 ---------------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK 302 (313)
T ss_dssp ---------------CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSS
T ss_pred ---------------ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCC
Confidence 334455666666666665555556666666666666666666555542 555666666666665
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.5e-38 Score=356.08 Aligned_cols=374 Identities=20% Similarity=0.210 Sum_probs=250.4
Q ss_pred CCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEe
Q 003200 361 RNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALG 440 (840)
Q Consensus 361 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 440 (840)
++|++|++++|.+++..|..|.++++|++|++++|.+.+.++...|.++++|++|++++|.++...+..+..+.+|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 56777777777777766777777777777777777776666655677777777777777766654444444444444444
Q ss_pred cccccCCCCCCc--cccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcC
Q 003200 441 LHNCYVGSRFPQ--WLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNM 518 (840)
Q Consensus 441 l~~~~~~~~~~~--~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l 518 (840)
+++|.+.+..+. .+..+++|++|++++|++++..+..++..+++|++|++++|.+.+..+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------------ 171 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE------------------ 171 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT------------------
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh------------------
Confidence 444444432222 245555555555555555555444433344444444444433332211
Q ss_pred CCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccc--------cCCCCcCEEEccCCc
Q 003200 519 SGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCW--------MSYQNLKVLKLSNNK 590 (840)
Q Consensus 519 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~--------~~l~~L~~L~Ls~n~ 590 (840)
..+.. + ...+++.|++++|.+.+..+..+ ..+++|++|++++|+
T Consensus 172 --------------------------~~l~~-l-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 223 (455)
T 3v47_A 172 --------------------------EDLLN-F-QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223 (455)
T ss_dssp --------------------------TTSGG-G-TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC
T ss_pred --------------------------hhhhc-c-ccccccccccccCcccccchhhccccccccccccceeeeEecCCCc
Confidence 11110 0 01456667777776665433322 234556666666666
Q ss_pred CCCCCCcccCCC---CcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhh-hccCCccEEEccCCcccc
Q 003200 591 FSGNLPNSLGSI---TSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFG-ERFSRMLVLILRSNQFHG 666 (840)
Q Consensus 591 l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~-~~l~~L~~L~l~~n~l~~ 666 (840)
+++..|..+... ++|+.|++++|.+.+... ..+.+.+..+..+. -..++|+.|++++|.+++
T Consensus 224 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 289 (455)
T 3v47_A 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA 289 (455)
T ss_dssp CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred ccccchhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccc
Confidence 655444443322 555666666555442211 11111111111111 124689999999999999
Q ss_pred cCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCC
Q 003200 667 PLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQ 746 (840)
Q Consensus 667 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 746 (840)
..|..+..+++|+.|++++|++++..|..+.++++| +.|++++|++++..|..++++++|+
T Consensus 290 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------------~~L~Ls~N~l~~~~~~~~~~l~~L~ 350 (455)
T 3v47_A 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL-------------------LKLNLSQNFLGSIDSRMFENLDKLE 350 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC-------------------CEEECCSSCCCEECGGGGTTCTTCC
T ss_pred cchhhcccCCCCCEEECCCCcccccChhHhcCcccC-------------------CEEECCCCccCCcChhHhcCcccCC
Confidence 999999999999999999999998888888888777 9999999999988899999999999
Q ss_pred eEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCCCCcC
Q 003200 747 SINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQL 813 (840)
Q Consensus 747 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~ 813 (840)
+|+|++|++++..|..|+.+++|++|++++|++++..+..+..+++|++|++++|++++.+|....+
T Consensus 351 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred EEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence 9999999999998999999999999999999999766677899999999999999999999965443
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=8.5e-39 Score=354.27 Aligned_cols=389 Identities=21% Similarity=0.283 Sum_probs=206.2
Q ss_pred CCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEc
Q 003200 338 GLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRV 417 (840)
Q Consensus 338 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L 417 (840)
.|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++++++|+.+++.+|.. .++++|++
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------~~l~~L~l 78 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------RQAHELEL 78 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------HTCSEEEC
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------cCCCEEEe
Confidence 566666666666 56666677777777777777777777777666666542222221110 12333333
Q ss_pred cCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCccccc
Q 003200 418 GGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHG 497 (840)
Q Consensus 418 ~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~ 497 (840)
++|.++.... .+++|+.|++++|.+.+ +|.. .++|++|++++|+++++.. ..++|++|++++|.+++
T Consensus 79 ~~~~l~~lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~-----~~~~L~~L~L~~n~l~~ 145 (454)
T 1jl5_A 79 NNLGLSSLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD-----LPPLLEYLGVSNNQLEK 145 (454)
T ss_dssp TTSCCSCCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS-----CCTTCCEEECCSSCCSS
T ss_pred cCCccccCCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC-----CCCCCCEEECcCCCCCC
Confidence 3333322111 11334444444444443 2221 2556666666666655322 12466666666666665
Q ss_pred ccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccC
Q 003200 498 KISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMS 577 (840)
Q Consensus 498 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 577 (840)
+|.+...++|++|++++|++++ +|..+++|++|++++|.+.+ +| .+..+++|++|++++|.+++ +|..
T Consensus 146 -lp~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~-l~-----~~~~l~~L~~L~l~~N~l~~-l~~~--- 213 (454)
T 1jl5_A 146 -LPELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEE-LP-----ELQNLPFLTAIYADNNSLKK-LPDL--- 213 (454)
T ss_dssp -CCCCTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSS-CC-----CCTTCTTCCEEECCSSCCSS-CCCC---
T ss_pred -CcccCCCCCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCc-Cc-----cccCCCCCCEEECCCCcCCc-CCCC---
Confidence 3455555666677777766665 45555677777777777766 22 14556777777777777774 3332
Q ss_pred CCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEE
Q 003200 578 YQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVL 657 (840)
Q Consensus 578 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L 657 (840)
.++|++|++++|+++ .+|. ++.+++|++|++++|++++ +|.. +++|++|++++|++++ +|.. .++|+.|
T Consensus 214 ~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~----~~~L~~L 282 (454)
T 1jl5_A 214 PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL----PQSLTFL 282 (454)
T ss_dssp CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC----CTTCCEE
T ss_pred cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc----cCcCCEE
Confidence 246777777777777 4553 7777777777777777764 4432 3677777777777764 5542 3677777
Q ss_pred EccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcc
Q 003200 658 ILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILS 737 (840)
Q Consensus 658 ~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~ 737 (840)
++++|++++.. .. .++|+.|++++|++++ ++. + +++|+.|++++|++++ +|.
T Consensus 283 ~ls~N~l~~l~-~~---~~~L~~L~l~~N~l~~-i~~----~------------------~~~L~~L~Ls~N~l~~-lp~ 334 (454)
T 1jl5_A 283 DVSENIFSGLS-EL---PPNLYYLNASSNEIRS-LCD----L------------------PPSLEELNVSNNKLIE-LPA 334 (454)
T ss_dssp ECCSSCCSEES-CC---CTTCCEEECCSSCCSE-ECC----C------------------CTTCCEEECCSSCCSC-CCC
T ss_pred ECcCCccCccc-Cc---CCcCCEEECcCCcCCc-ccC----C------------------cCcCCEEECCCCcccc-ccc
Confidence 77777777521 11 2567777777777763 221 1 1233777777777775 554
Q ss_pred cccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccc--cCCccccCC-------------CCCCeEeccCCc
Q 003200 738 EVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSG--EIPQSMSSL-------------TFLNHLNLSNNN 802 (840)
Q Consensus 738 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l-------------~~L~~L~ls~N~ 802 (840)
. +++|++|++++|+++ .+|. .+++|++|++++|++++ .+|.++..+ ++|++|++++|+
T Consensus 335 ~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 335 L---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp C---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred c---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 3 467777777777777 4665 36777777777777777 677777666 788899999999
Q ss_pred ccc--cCCCC
Q 003200 803 LTG--KIPLS 810 (840)
Q Consensus 803 l~g--~ip~~ 810 (840)
++| .||..
T Consensus 408 l~~~~~iP~s 417 (454)
T 1jl5_A 408 LREFPDIPES 417 (454)
T ss_dssp ----------
T ss_pred CCccccchhh
Confidence 887 77764
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.1e-38 Score=351.05 Aligned_cols=422 Identities=21% Similarity=0.278 Sum_probs=200.4
Q ss_pred CCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEE
Q 003200 234 LTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSV 313 (840)
Q Consensus 234 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L 313 (840)
.+.|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++.+++|+.+++..|. ..++++|
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~------------~~~l~~L 76 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL------------DRQAHEL 76 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH------------HHTCSEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh------------ccCCCEE
Confidence 46777777777777 6777777777777777777777777777777777777666666531 0234444
Q ss_pred EcCCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEcc
Q 003200 314 NLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIY 393 (840)
Q Consensus 314 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 393 (840)
++++|.++ + +|.. .++|++|++++|.+++ +|.. +++|++|+++
T Consensus 77 ~l~~~~l~-----------------------------~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~ 119 (454)
T 1jl5_A 77 ELNNLGLS-----------------------------S-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVD 119 (454)
T ss_dssp ECTTSCCS-----------------------------C-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECC
T ss_pred EecCCccc-----------------------------c-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECC
Confidence 44444443 3 1111 2345555555555554 2321 2445555555
Q ss_pred CCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCC
Q 003200 394 DNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDI 473 (840)
Q Consensus 394 ~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~ 473 (840)
+|.+.+ ++.. .++|++|++++|.++ + +| .+..+++|++|++++|+++++
T Consensus 120 ~n~l~~-l~~~----~~~L~~L~L~~n~l~------------------------~-lp-~~~~l~~L~~L~l~~N~l~~l 168 (454)
T 1jl5_A 120 NNNLKA-LSDL----PPLLEYLGVSNNQLE------------------------K-LP-ELQNSSFLKIIDVDNNSLKKL 168 (454)
T ss_dssp SSCCSC-CCSC----CTTCCEEECCSSCCS------------------------S-CC-CCTTCTTCCEEECCSSCCSCC
T ss_pred CCccCc-ccCC----CCCCCEEECcCCCCC------------------------C-Cc-ccCCCCCCCEEECCCCcCccc
Confidence 555442 1110 023333333333332 1 22 244445555555555555542
Q ss_pred cchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCC
Q 003200 474 FPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNE 553 (840)
Q Consensus 474 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 553 (840)
.. ..++|++|++++|.+++ ++.+...++|+.|++++|.+++ +|..+++|++|++++|.+. .+|. +..
T Consensus 169 p~-----~~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~-~lp~-----~~~ 235 (454)
T 1jl5_A 169 PD-----LPPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILE-ELPE-----LQN 235 (454)
T ss_dssp CC-----CCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCS-SCCC-----CTT
T ss_pred CC-----CcccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCC-cccc-----cCC
Confidence 21 12356666666666555 3345555666666666666665 3444567777777777776 3332 345
Q ss_pred CCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEe
Q 003200 554 TKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLD 633 (840)
Q Consensus 554 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 633 (840)
+++|++|++++|++++ +|.. .++|++|++++|++++ +|.. .++|++|++++|++++. |.. .++|+.|+
T Consensus 236 l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~ 303 (454)
T 1jl5_A 236 LPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLN 303 (454)
T ss_dssp CTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEE
T ss_pred CCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEE
Confidence 7778888888888774 4432 3678888888888775 4432 36778888888877752 211 15777888
Q ss_pred CCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccc
Q 003200 634 VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVV 713 (840)
Q Consensus 634 ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 713 (840)
+++|++++ ++. ..++|++|++++|++++ +|.. +++|+.|++++|+++ .+|. .+++|
T Consensus 304 l~~N~l~~-i~~----~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L----------- 359 (454)
T 1jl5_A 304 ASSNEIRS-LCD----LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNL----------- 359 (454)
T ss_dssp CCSSCCSE-ECC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTC-----------
T ss_pred CcCCcCCc-ccC----CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhc-----------
Confidence 88887764 222 12477777887777775 4443 467777778777777 4554 23333
Q ss_pred ccccCCcceEEeCCCCcccc--cCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccc--cCCccccC
Q 003200 714 YREILPLVSLLDISRNNFSG--EILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSG--EIPQSMSS 789 (840)
Q Consensus 714 ~~~~~~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~ 789 (840)
+.|++++|++++ .+|..++. ++.|.+.+.+|.. +++|++||+++|++++ .+|.+
T Consensus 360 --------~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s--- 417 (454)
T 1jl5_A 360 --------KQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES--- 417 (454)
T ss_dssp --------CEEECCSSCCSSCCCCCTTCCE--------EECCC-------------------------------------
T ss_pred --------cEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccchhh---
Confidence 777777777776 55654432 2346666667663 4899999999999997 66654
Q ss_pred CCCCCeEeccCCcccccCCCC
Q 003200 790 LTFLNHLNLSNNNLTGKIPLS 810 (840)
Q Consensus 790 l~~L~~L~ls~N~l~g~ip~~ 810 (840)
++.|.+.+|.+.+.+|..
T Consensus 418 ---l~~L~~~~~~~~~~~~~~ 435 (454)
T 1jl5_A 418 ---VEDLRMNSERVVDPYEFA 435 (454)
T ss_dssp ---------------------
T ss_pred ---HhheeCcCcccCCccccC
Confidence 566778999999988754
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-36 Score=340.38 Aligned_cols=386 Identities=17% Similarity=0.180 Sum_probs=265.7
Q ss_pred CCEEECcCCCCCCCCcccccCCCCCcEEEcccCccccccchhhhcCCCCcEEecccccCccccC-cccccCCCCCcEEEc
Q 003200 237 LKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRI-PRSMANFCNLKSVNL 315 (840)
Q Consensus 237 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~l~~l~~L~~L~l 315 (840)
-+.++.+++.++ .+|. + .++|++|++++|.+++..|..+.++++|++|++++ +.+.+.+ +..+.++++|++|++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQ-QTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCC-CSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcC-CcccceECcccccccccCCEEeC
Confidence 356788888776 5555 2 26799999999999887788888899999999888 4555444 455677776666666
Q ss_pred CCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCCCCCEEEccCCccccccccc--ccCCCCCCEEEcc
Q 003200 316 RGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPES--FGQLSTLRELQIY 393 (840)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~ 393 (840)
++|.+.+..|. .++.+++|++|++++|.+++..+.. +.++++|++|+++
T Consensus 87 s~n~l~~~~~~-----------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 137 (455)
T 3v47_A 87 DYNQFLQLETG-----------------------------AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137 (455)
T ss_dssp TTCTTCEECTT-----------------------------TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECC
T ss_pred CCCccCccChh-----------------------------hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECC
Confidence 66665554444 4444455555555555554433222 4445555555555
Q ss_pred CCccccccChhhhccCCCCCEEEccCcccceeccCCCCCc--cCccEEecccccCCCCCCcc--------ccCCCCCcEE
Q 003200 394 DNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPP--FQLVALGLHNCYVGSRFPQW--------LHSQKHLQYL 463 (840)
Q Consensus 394 ~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~--------l~~l~~L~~L 463 (840)
+|.+.+..+...+.++++|++|++++|.+.......+... .+++.+++++|.+....+.+ +..+++|++|
T Consensus 138 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L 217 (455)
T 3v47_A 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL 217 (455)
T ss_dssp SSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEE
T ss_pred CCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeE
Confidence 5555433333334555555555555555544433333322 34555555555555444333 2355778888
Q ss_pred EccCCCCCCCcchHHHhcc--CCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcc
Q 003200 464 NLLNSRISDIFPIRFLKSA--SQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSG 541 (840)
Q Consensus 464 ~Ls~n~i~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~ 541 (840)
++++|++++..+..+.... ++++.+++++|...+..... +.+.+
T Consensus 218 ~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------------------------------~~~~~ 263 (455)
T 3v47_A 218 DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH----------------------------------TNFKD 263 (455)
T ss_dssp ECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC----------------------------------CSSCC
T ss_pred ecCCCcccccchhhhhccccccceeeEeeccccccccccch----------------------------------hhhcc
Confidence 8888888877776664432 56777777666554321111 11111
Q ss_pred cCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCc
Q 003200 542 SISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPI 621 (840)
Q Consensus 542 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 621 (840)
..+..+. -...++|+.|++++|.+++..|..+..+++|++|++++|++++..|..|..+++|++|++++|++++..|.
T Consensus 264 ~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 341 (455)
T 3v47_A 264 PDNFTFK--GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341 (455)
T ss_dssp CCTTTTG--GGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG
T ss_pred Ccccccc--cccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh
Confidence 1110000 01236899999999999988899999999999999999999988888999999999999999999888888
Q ss_pred ccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCC
Q 003200 622 SLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIP 693 (840)
Q Consensus 622 ~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 693 (840)
.+.++++|++|++++|++++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 342 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 342 MFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred HhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999999999999988888887 78999999999999998777788899999999999999998777
No 30
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.2e-36 Score=316.85 Aligned_cols=259 Identities=30% Similarity=0.569 Sum_probs=244.3
Q ss_pred CcccEEeccCCcCcc--ccCccccCCCCcCEEEccC-CcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcE
Q 003200 555 KSLEGLKLTDNYLQG--EIPDCWMSYQNLKVLKLSN-NKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALAS 631 (840)
Q Consensus 555 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 631 (840)
.+++.|++++|.+++ .+|..+.++++|++|++++ |.+.+.+|..|+.+++|++|++++|++++.+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578999999999998 8999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred EeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCcc-ccceeecccccccccCCccccccccCcccccccC
Q 003200 632 LDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLA-FLQILDLADNNLSGAIPKCISNLTGMVTVKSFTG 710 (840)
Q Consensus 632 L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~ 710 (840)
|++++|.+++.+|..+. .+++|++|++++|++++.+|..+..++ +|+.|++++|++++.+|..+..++ |
T Consensus 130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L-------- 199 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L-------- 199 (313)
T ss_dssp EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C--------
T ss_pred EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c--------
Confidence 99999999999999987 799999999999999999999999998 999999999999999999888775 6
Q ss_pred cccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCC
Q 003200 711 SVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSL 790 (840)
Q Consensus 711 ~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 790 (840)
+.|++++|++++.+|..+..+++|+.|++++|++++.+|. +..+++|++|++++|++++.+|..+..+
T Consensus 200 -----------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 267 (313)
T 1ogq_A 200 -----------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQL 267 (313)
T ss_dssp -----------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred -----------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcC
Confidence 9999999999999999999999999999999999977776 8899999999999999999999999999
Q ss_pred CCCCeEeccCCcccccCCCCCcCCCcCcCCCCCC-CCCCCCCCCCCC
Q 003200 791 TFLNHLNLSNNNLTGKIPLSTQLQSFNASSFAGN-DLCGAPLPKNCT 836 (840)
Q Consensus 791 ~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn-~lcg~~~~~~c~ 836 (840)
++|++|++++|+++|.+|..+++.++....+.|| .+||.|+. +|+
T Consensus 268 ~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C~ 313 (313)
T 1ogq_A 268 KFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-ACT 313 (313)
T ss_dssp TTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CCC
T ss_pred cCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CCC
Confidence 9999999999999999999989999999999999 89999987 784
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.7e-35 Score=323.33 Aligned_cols=364 Identities=20% Similarity=0.216 Sum_probs=238.8
Q ss_pred ccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcccceeccC
Q 003200 349 IYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKH 428 (840)
Q Consensus 349 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 428 (840)
..+..+..++.+++|++|++++|.+++. | .++.+++|++|++++|.+.+ ++ +..+++|++|++++|.++..
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~--- 100 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL--- 100 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC---
T ss_pred cCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee---
Confidence 3344455677788999999999988875 4 68888999999999998875 33 77888888888888887753
Q ss_pred CCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcc
Q 003200 429 DWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQL 508 (840)
Q Consensus 429 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L 508 (840)
.+..+++|++|++++|.+++. + +..+++|++|++++|++++.. ...+++|++|++++|...+.+ .+.
T Consensus 101 ~~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~-~~~----- 167 (457)
T 3bz5_A 101 DVTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKL-DVT----- 167 (457)
T ss_dssp CCTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCC-CCT-----
T ss_pred ecCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCccccc-ccc-----
Confidence 244555555555555555542 1 455555555555555555531 233444444444444332222 122
Q ss_pred cEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccC
Q 003200 509 LFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSN 588 (840)
Q Consensus 509 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 588 (840)
.+++|++|++++|++++. + +..+++|+.|++++|.+++. .+..+++|++|++++
T Consensus 168 ----------------~l~~L~~L~ls~n~l~~l-~------l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~ 221 (457)
T 3bz5_A 168 ----------------PQTQLTTLDCSFNKITEL-D------VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSS 221 (457)
T ss_dssp ----------------TCTTCCEEECCSSCCCCC-C------CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCS
T ss_pred ----------------cCCcCCEEECCCCcccee-c------cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcC
Confidence 245555666666655552 1 33456677777777776654 256667777777777
Q ss_pred CcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccC
Q 003200 589 NKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPL 668 (840)
Q Consensus 589 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~ 668 (840)
|++++ +| ++.+++|++|++++|++++.. +..+++|+.|++++| +|+.|++++|.+.+.+
T Consensus 222 N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~ 280 (457)
T 3bz5_A 222 NKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYF 280 (457)
T ss_dssp SCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEE
T ss_pred Ccccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC---------------CCCEEECCCCccCCcc
Confidence 77765 34 666677777777777776543 334556666666554 3445666666666655
Q ss_pred CccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeE
Q 003200 669 PKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSI 748 (840)
Q Consensus 669 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 748 (840)
| +..+++|+.|++++|+..+.+|....+++.+. ....++|+.|++++|++++. .++++++|+.|
T Consensus 281 ~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~-----------l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L 344 (457)
T 3bz5_A 281 Q--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD-----------LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSL 344 (457)
T ss_dssp E--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC-----------CTTCTTCCEEECTTCCCSCC---CCTTCTTCSEE
T ss_pred c--ccccccCCEEECCCCcccceeccCCCcceEec-----------hhhcccCCEEECCCCccccc---ccccCCcCcEE
Confidence 5 35667777777777777777765444443331 12346779999999999973 38899999999
Q ss_pred eCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCCC
Q 003200 749 NFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLS 810 (840)
Q Consensus 749 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 810 (840)
++++|++++ ++.|+.|++++|++.|. ..+..|..+++++|+++|.||..
T Consensus 345 ~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 345 SCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp ECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred ECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 999999985 24677788999999876 34566888899999999999864
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.7e-35 Score=325.38 Aligned_cols=366 Identities=21% Similarity=0.204 Sum_probs=269.0
Q ss_pred cccchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccc
Q 003200 321 SQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGT 400 (840)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 400 (840)
.+..+..+..++ +|++|++++|.+++. | .++.+++|++|++++|.+++. | ++.+++|++|++++|.+.+
T Consensus 31 ~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~- 99 (457)
T 3bz5_A 31 QATDTISEEQLA-----TLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN- 99 (457)
T ss_dssp CTTSEEEHHHHT-----TCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-
T ss_pred CcccccChhHcC-----CCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-
Confidence 333344455566 999999999999985 4 689999999999999999986 3 8899999999999999985
Q ss_pred cChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHh
Q 003200 401 LSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLK 480 (840)
Q Consensus 401 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 480 (840)
++ +.++++|++|++++|+++.. .+..+++|+.|++++|.+++. .+..+++|++|++++|+..+..+ +.
T Consensus 100 ~~---~~~l~~L~~L~L~~N~l~~l---~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~---~~ 167 (457)
T 3bz5_A 100 LD---VTPLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD---VT 167 (457)
T ss_dssp CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC---CT
T ss_pred ee---cCCCCcCCEEECCCCcCCee---cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc---cc
Confidence 33 88999999999999999874 377889999999999999875 27889999999999996555443 35
Q ss_pred ccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEE
Q 003200 481 SASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGL 560 (840)
Q Consensus 481 ~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L 560 (840)
.+++|++|++++|++++. + +...++|+.|++++|.+++.....+++|++|++++|++++ +| +..+++|+.|
T Consensus 168 ~l~~L~~L~ls~n~l~~l-~-l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip------~~~l~~L~~L 238 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITEL-D-VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID------VTPLTQLTYF 238 (457)
T ss_dssp TCTTCCEEECCSSCCCCC-C-CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC------CTTCTTCSEE
T ss_pred cCCcCCEEECCCCcccee-c-cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cC------ccccCCCCEE
Confidence 688999999999999874 3 5556777777777777766533345566666666666655 22 2335566666
Q ss_pred eccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCccc
Q 003200 561 KLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFV 640 (840)
Q Consensus 561 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 640 (840)
++++|++++.. +..+++|+.|++++| +|+.|++++|.+.+.+| +..+++|+.|++++|+..
T Consensus 239 ~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l 299 (457)
T 3bz5_A 239 DCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQL 299 (457)
T ss_dssp ECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTC
T ss_pred EeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCccc
Confidence 66666665432 234455555555443 34556666776666655 456777888888887777
Q ss_pred ccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCc
Q 003200 641 GNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPL 720 (840)
Q Consensus 641 ~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~ 720 (840)
+.+|. ..++|+.|++++ +++|+.|++++|++++ ++ +.++++|
T Consensus 300 ~~l~~----~~~~L~~L~l~~-------------~~~L~~L~L~~N~l~~-l~--l~~l~~L------------------ 341 (457)
T 3bz5_A 300 YLLDC----QAAGITELDLSQ-------------NPKLVYLYLNNTELTE-LD--VSHNTKL------------------ 341 (457)
T ss_dssp CEEEC----TTCCCSCCCCTT-------------CTTCCEEECTTCCCSC-CC--CTTCTTC------------------
T ss_pred ceecc----CCCcceEechhh-------------cccCCEEECCCCcccc-cc--cccCCcC------------------
Confidence 66664 234555554443 3678888999998886 33 6666655
Q ss_pred ceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccC
Q 003200 721 VSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSS 789 (840)
Q Consensus 721 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 789 (840)
+.|++++|++++ ++.|+.|++++|++.|. +++..|+.+++++|+++|.+|..+..
T Consensus 342 -~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 342 -KSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp -SEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred -cEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence 888999998885 35677778888888875 35677888889999999888876543
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.2e-34 Score=317.26 Aligned_cols=346 Identities=28% Similarity=0.376 Sum_probs=178.8
Q ss_pred CCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccE
Q 003200 359 QFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVA 438 (840)
Q Consensus 359 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 438 (840)
.++++++|+++++.+... | .+..+++|++|++++|.+.+ ++. +.++++|++|++++|.+.....
T Consensus 44 ~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~----------- 107 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP----------- 107 (466)
T ss_dssp HHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG-----------
T ss_pred HhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh-----------
Confidence 356888999998888754 3 47788899999999998874 333 7788888888888877664322
Q ss_pred EecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcC
Q 003200 439 LGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNM 518 (840)
Q Consensus 439 L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l 518 (840)
+..+++|++|++++|++++..+ +..+++|++|++++|.+.+. +.+...++|+.|++. +.+
T Consensus 108 ---------------~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~-~~~ 167 (466)
T 1o6v_A 108 ---------------LANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFG-NQV 167 (466)
T ss_dssp ---------------GTTCTTCCEEECCSSCCCCCGG---GTTCTTCSEEEEEEEEECCC-GGGTTCTTCSEEEEE-ESC
T ss_pred ---------------hcCCCCCCEEECCCCCCCCChH---HcCCCCCCEEECCCCccCCC-hhhccCCcccEeecC-Ccc
Confidence 4555666666666666655543 34556666666666665542 234444555555543 222
Q ss_pred CCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcc
Q 003200 519 SGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNS 598 (840)
Q Consensus 519 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 598 (840)
.+..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+++..|
T Consensus 168 ~~~~~---------------------------~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-- 216 (466)
T 1o6v_A 168 TDLKP---------------------------LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-- 216 (466)
T ss_dssp CCCGG---------------------------GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred cCchh---------------------------hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--
Confidence 21111 22234444444444444322 124444444444444444443322
Q ss_pred cCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCcccc
Q 003200 599 LGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFL 678 (840)
Q Consensus 599 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 678 (840)
++.+++|+.|++++|++++. ..+..+++|+.|++++|.+.+..| +. .+++|+.|++++|.+++..+ +..+++|
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L 289 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS-GLTKLTELKLGANQISNISP--LAGLTAL 289 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh-cCCCCCEEECCCCccCcccc--ccCCCcc
Confidence 33444444444444444421 234444445555555554443322 22 34445555555555443322 4445555
Q ss_pred ceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCccccc
Q 003200 679 QILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGR 758 (840)
Q Consensus 679 ~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 758 (840)
+.|++++|++.+..| +..+++| +.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 290 ~~L~L~~n~l~~~~~--~~~l~~L-------------------~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 290 TNLELNENQLEDISP--ISNLKNL-------------------TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTC-------------------SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred CeEEcCCCcccCchh--hcCCCCC-------------------CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc
Confidence 555555555543222 2222222 555555555554333 44555555555555555532
Q ss_pred CCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccc
Q 003200 759 IPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTG 805 (840)
Q Consensus 759 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 805 (840)
..++.+++|+.|++++|++++..| +..+++|++|++++|++++
T Consensus 347 --~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 347 --SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp --GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred --hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 234555555555555555554444 4455555555555555554
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.6e-33 Score=312.48 Aligned_cols=344 Identities=25% Similarity=0.345 Sum_probs=197.3
Q ss_pred CEEEEEcCCCCCCCCCccccccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCC
Q 003200 76 HILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLS 155 (840)
Q Consensus 76 ~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~ 155 (840)
+++.|++.++ .+ ..++ .+..+++|++||+++|.+.+ +|. ++.+++|++|++++|.+.+..| +++++
T Consensus 47 ~l~~L~l~~~-------~i-~~l~-~~~~l~~L~~L~Ls~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~ 112 (466)
T 1o6v_A 47 QVTTLQADRL-------GI-KSID-GVEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADITP--LANLT 112 (466)
T ss_dssp TCCEEECCSS-------CC-CCCT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCT
T ss_pred cccEEecCCC-------CC-ccCc-chhhhcCCCEEECCCCccCC--chh-hhccccCCEEECCCCccccChh--hcCCC
Confidence 5677777664 22 2233 36667777777777777774 343 6777777777777777765443 77777
Q ss_pred CCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCC
Q 003200 156 DLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLT 235 (840)
Q Consensus 156 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~ 235 (840)
+|++|++++|.+....+ +.++++|++|++++|.+...+ .+..+++|++|+++ +.+... ..+..++
T Consensus 113 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~-~~~~~~--------~~~~~l~ 177 (466)
T 1o6v_A 113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS----ALSGLTSLQQLSFG-NQVTDL--------KPLANLT 177 (466)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG----GGTTCTTCSEEEEE-ESCCCC--------GGGTTCT
T ss_pred CCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh----hhccCCcccEeecC-CcccCc--------hhhccCC
Confidence 77777777777665433 677777777777777776643 35667777777775 333322 2366667
Q ss_pred CCCEEECcCCCCCCCCcccccCCCCCcEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEc
Q 003200 236 SLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNL 315 (840)
Q Consensus 236 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l 315 (840)
+|++|++++|.+.+. ..+..+++|++|++++|.+++..+ ++.+++|++|++++ +.+.+. ..+..+++|+.|++
T Consensus 178 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~-n~l~~~--~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 178 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG-NQLKDI--GTLASLTNLTDLDL 250 (466)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCS-SCCCCC--GGGGGCTTCSEEEC
T ss_pred CCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCC-CCcccc--hhhhcCCCCCEEEC
Confidence 777777777766543 236666777777777776665444 55666666666666 333321 23445555555555
Q ss_pred CCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCC
Q 003200 316 RGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDN 395 (840)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 395 (840)
++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 251 ~~n~l~~~~~-------------------------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n 297 (466)
T 1o6v_A 251 ANNQISNLAP-------------------------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 297 (466)
T ss_dssp CSSCCCCCGG-------------------------------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred CCCccccchh-------------------------------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCC
Confidence 5555444332 3444445555555554444322 444445555555555
Q ss_pred ccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcc
Q 003200 396 KLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFP 475 (840)
Q Consensus 396 ~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~ 475 (840)
.+.+. +. +..+++|+.|++++|++....+ +..+++|+.|++++|.+.+. ..+..+++|++|++++|++++..|
T Consensus 298 ~l~~~-~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 298 QLEDI-SP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp CCSCC-GG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred cccCc-hh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence 44422 11 3444444444444444443222 22333444444444444332 345666777777777777766655
Q ss_pred hHHHhccCCccEEEccCcccccc
Q 003200 476 IRFLKSASQLKFLDVGLNQFHGK 498 (840)
Q Consensus 476 ~~~~~~l~~L~~L~l~~n~l~~~ 498 (840)
...+++|+.|++++|.+++.
T Consensus 371 ---~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 371 ---LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp ---GTTCTTCCEEECCCEEEECC
T ss_pred ---hhcCCCCCEEeccCCcccCC
Confidence 35566677777777666653
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=324.78 Aligned_cols=321 Identities=18% Similarity=0.192 Sum_probs=194.1
Q ss_pred CEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEeccc
Q 003200 364 VTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHN 443 (840)
Q Consensus 364 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 443 (840)
+.++.+++.++.+ |..+. ++++.|++++|.+.+ ++...|.++++|++|++++|.++..
T Consensus 14 ~~v~c~~~~l~~i-p~~~~--~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~------------------ 71 (477)
T 2id5_A 14 RAVLCHRKRFVAV-PEGIP--TETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAV------------------ 71 (477)
T ss_dssp TEEECCSCCCSSC-CSCCC--TTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEE------------------
T ss_pred CEEEeCCCCcCcC-CCCCC--CCCcEEECCCCccce-ECHhHccCCCCCCEEECCCCccCEe------------------
Confidence 4677777776643 44332 467777777777763 3333566666666666666655543
Q ss_pred ccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCC
Q 003200 444 CYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLP 523 (840)
Q Consensus 444 ~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 523 (840)
.|..|..+++|++|++++|+++++.+..| ..+++|+
T Consensus 72 ------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~------------------------------------- 107 (477)
T 2id5_A 72 ------EPGAFNNLFNLRTLGLRSNRLKLIPLGVF-TGLSNLT------------------------------------- 107 (477)
T ss_dssp ------CTTTTTTCTTCCEEECCSSCCCSCCTTSS-TTCTTCC-------------------------------------
T ss_pred ------ChhhhhCCccCCEEECCCCcCCccCcccc-cCCCCCC-------------------------------------
Confidence 33344445555555555555444332211 1122222
Q ss_pred CCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCC
Q 003200 524 LVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSIT 603 (840)
Q Consensus 524 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 603 (840)
+|++++|.+.+..+. .+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..++
T Consensus 108 -------~L~Ls~n~i~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 176 (477)
T 2id5_A 108 -------KLDISENKIVILLDY----MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176 (477)
T ss_dssp -------EEECTTSCCCEECTT----TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCT
T ss_pred -------EEECCCCccccCChh----HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccC
Confidence 222222222222221 123356777777777777766677777777777777777777765555677777
Q ss_pred cccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeec
Q 003200 604 SLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDL 683 (840)
Q Consensus 604 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L 683 (840)
+|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|.... ...+|+.|++++|++++..+..+..+++|+.|++
T Consensus 177 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 255 (477)
T 2id5_A 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL 255 (477)
T ss_dssp TCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeEC
Confidence 777777777777766666777777777777777776666666555 3446677777777666544455666666666666
Q ss_pred ccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcch
Q 003200 684 ADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESI 763 (840)
Q Consensus 684 s~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l 763 (840)
++|++++..+..+..+++| +.|+|++|++++..|..+.++++|+.|+|++|++++..+..|
T Consensus 256 s~n~l~~~~~~~~~~l~~L-------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 316 (477)
T 2id5_A 256 SYNPISTIEGSMLHELLRL-------------------QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF 316 (477)
T ss_dssp CSSCCCEECTTSCTTCTTC-------------------CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGB
T ss_pred CCCcCCccChhhccccccC-------------------CEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHc
Confidence 6666665555555555544 666666666666666666666666666666666665555556
Q ss_pred hccCCCCeEeCCCCcccc
Q 003200 764 GTMRALESVDFSVNQLSG 781 (840)
Q Consensus 764 ~~l~~L~~L~Ls~N~l~~ 781 (840)
..+++|++|++++|++..
T Consensus 317 ~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 317 HSVGNLETLILDSNPLAC 334 (477)
T ss_dssp SCGGGCCEEECCSSCEEC
T ss_pred CCCcccCEEEccCCCccC
Confidence 666666666666666653
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3e-33 Score=314.80 Aligned_cols=312 Identities=22% Similarity=0.236 Sum_probs=276.3
Q ss_pred cccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCccccc
Q 003200 97 KVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLS 176 (840)
Q Consensus 97 ~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~ 176 (840)
.+|..+. +++++|||++|.++++ .|..+..+++|++|+|++|.+++..|.+|.++++|++|++++|.+.......|.
T Consensus 25 ~ip~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 101 (477)
T 2id5_A 25 AVPEGIP--TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101 (477)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSST
T ss_pred cCCCCCC--CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccccc
Confidence 3444443 5899999999999975 567899999999999999999998899999999999999999999988888899
Q ss_pred CCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCccccc
Q 003200 177 GLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLY 256 (840)
Q Consensus 177 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 256 (840)
++++|++|++++|++.... +..+..+++|++|++++|.+....+ ..|..+++|++|++++|.+++..+..+.
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 173 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILL--DYMFQDLYNLKSLEVGDNDLVYISH------RAFSGLNSLEQLTLEKCNLTSIPTEALS 173 (477)
T ss_dssp TCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEEECCTTCCEECT------TSSTTCTTCCEEEEESCCCSSCCHHHHT
T ss_pred CCCCCCEEECCCCccccCC--hhHccccccCCEEECCCCccceeCh------hhccCCCCCCEEECCCCcCcccChhHhc
Confidence 9999999999999998753 3567889999999999999988876 7899999999999999999987778899
Q ss_pred CCCCCcEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCC
Q 003200 257 KFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVS 336 (840)
Q Consensus 257 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 336 (840)
.+++|++|++++|.+.+..+..+..+++|++|++++ +...+.++.......+|+.|++++|.+.+..+..+..++
T Consensus 174 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~---- 248 (477)
T 2id5_A 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH-WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV---- 248 (477)
T ss_dssp TCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC-CTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT----
T ss_pred ccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC-CccccccCcccccCccccEEECcCCcccccCHHHhcCcc----
Confidence 999999999999999988888899999999999999 456666777766777999999999999977767777776
Q ss_pred CCCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEE
Q 003200 337 NGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFR 416 (840)
Q Consensus 337 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~ 416 (840)
+|+.|++++|.+.+..+..+..+++|++|++++|++.+..|..|.++++|++|++++|.++ .++...|..+++|+.|+
T Consensus 249 -~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~ 326 (477)
T 2id5_A 249 -YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLI 326 (477)
T ss_dssp -TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS-CCCGGGBSCGGGCCEEE
T ss_pred -ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc-eeCHhHcCCCcccCEEE
Confidence 9999999999999888888999999999999999999998999999999999999999997 56666889999999999
Q ss_pred ccCcccceec
Q 003200 417 VGGNQLTFEV 426 (840)
Q Consensus 417 L~~n~l~~~~ 426 (840)
+++|++.+..
T Consensus 327 l~~N~l~c~c 336 (477)
T 2id5_A 327 LDSNPLACDC 336 (477)
T ss_dssp CCSSCEECSG
T ss_pred ccCCCccCcc
Confidence 9999987543
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.5e-32 Score=300.28 Aligned_cols=238 Identities=20% Similarity=0.224 Sum_probs=181.8
Q ss_pred CCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEe
Q 003200 554 TKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLD 633 (840)
Q Consensus 554 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 633 (840)
+++|++|++++|.+++..|..+..+++|++|++++|++++. .+..+++|+.|++++|.+++ +...++|++|+
T Consensus 140 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~ 211 (390)
T 3o6n_A 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELD 211 (390)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEE
T ss_pred CCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEE
Confidence 45677777777777666666677777777777777777754 24556777777777777763 23345788888
Q ss_pred CCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccc
Q 003200 634 VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVV 713 (840)
Q Consensus 634 ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 713 (840)
+++|.+... |.. ..++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|..+..+++|
T Consensus 212 l~~n~l~~~-~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----------- 274 (390)
T 3o6n_A 212 ASHNSINVV-RGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL----------- 274 (390)
T ss_dssp CCSSCCCEE-ECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC-----------
T ss_pred CCCCeeeec-ccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC-----------
Confidence 888887643 443 346788888888888764 567888899999999999988778888877776
Q ss_pred ccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCC
Q 003200 714 YREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFL 793 (840)
Q Consensus 714 ~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 793 (840)
+.|++++|++++ +|..+..+++|++|++++|+++ .+|..++.+++|++|++++|++++ +| +..+++|
T Consensus 275 --------~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L 341 (390)
T 3o6n_A 275 --------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTL 341 (390)
T ss_dssp --------CEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCC
T ss_pred --------CEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chhhccC
Confidence 889999999985 5667788999999999999999 678889999999999999999985 44 7788999
Q ss_pred CeEeccCCcccccCCCCCcCCCcCcCCCCCC-CCCCCC
Q 003200 794 NHLNLSNNNLTGKIPLSTQLQSFNASSFAGN-DLCGAP 830 (840)
Q Consensus 794 ~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn-~lcg~~ 830 (840)
++|++++|++.+.-. ...+..+....+.++ ..|+.+
T Consensus 342 ~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 342 KNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp SEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCCTT
T ss_pred CEEEcCCCCccchhH-HHHHHHHHhhcccccCceeccc
Confidence 999999999987422 233555666677788 788754
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.2e-33 Score=303.35 Aligned_cols=211 Identities=20% Similarity=0.188 Sum_probs=137.8
Q ss_pred CCCCCCCCCCCcc-ccceecCCCCCCEEEEEcCCCCCCCCCccccccccccccCCCCCCEEeCCCCCCCCCCccc-cccC
Q 003200 52 RLASWTGDGDCCT-WAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPR-FIGS 129 (840)
Q Consensus 52 ~l~~W~~~~~~c~-w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~-~l~~ 129 (840)
.+++|..+.+||. |.++.|.... +.+... .........-..++++++|+++++.+.. +|. .+..
T Consensus 2 ~~~~~~~~~~C~~~~~~~~c~~~~-----~~i~~~-------~~~~~~~~~~~~l~~l~~l~l~~~~l~~--l~~~~~~~ 67 (390)
T 3o6n_A 2 NVKPRQPEYKCIDSNLQYDCVFYD-----VHIDMQ-------TQDVYFGFEDITLNNQKIVTFKNSTMRK--LPAALLDS 67 (390)
T ss_dssp -----CCEECBCC------EEEES-----CEECSS-------CCCCEESCSSGGGCCCSEEEEESCEESE--ECTHHHHH
T ss_pred CcCCCCCccceehhhhhhccceee-----eeeecc-------cccccccccccccCCceEEEecCCchhh--CChhHhcc
Confidence 3678987788874 5555553111 111111 1111122223457899999999999884 555 4688
Q ss_pred CCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCE
Q 003200 130 MRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLE 209 (840)
Q Consensus 130 l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~ 209 (840)
+++|++|++++|.+.+..+..|.++++|++|++++|.+....+..|.++++|++|++++|+++.++. ..+..+++|++
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--~~~~~l~~L~~ 145 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR--GIFHNTPKLTT 145 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCH--HHhcCCCCCcE
Confidence 9999999999999998888899999999999999999988888888889999999998888876543 22456677777
Q ss_pred EEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccCccccccchhhhcCCCCcEEe
Q 003200 210 LRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLD 289 (840)
Q Consensus 210 L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 289 (840)
|++++|.+.+.++ ..+..+++|++|++++|.+++. .+..+++|++|++++|.+++ +...++|++|+
T Consensus 146 L~L~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~ 211 (390)
T 3o6n_A 146 LSMSNNNLERIED------DTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELD 211 (390)
T ss_dssp EECCSSCCCBCCT------TTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEE
T ss_pred EECCCCccCccCh------hhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEE
Confidence 7777777666554 5566667777777777766643 24455666666666666553 12234556666
Q ss_pred ccc
Q 003200 290 LSI 292 (840)
Q Consensus 290 L~~ 292 (840)
+++
T Consensus 212 l~~ 214 (390)
T 3o6n_A 212 ASH 214 (390)
T ss_dssp CCS
T ss_pred CCC
Confidence 655
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.1e-32 Score=315.57 Aligned_cols=238 Identities=20% Similarity=0.210 Sum_probs=192.3
Q ss_pred CCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEe
Q 003200 554 TKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLD 633 (840)
Q Consensus 554 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 633 (840)
+++|++|++++|.+++..|..|..+++|++|++++|.+++.. ++.+++|+.|++++|.+++ +...++|+.|+
T Consensus 146 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ 217 (597)
T 3oja_B 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELD 217 (597)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEE
T ss_pred CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheee
Confidence 567777777777777777777888888888888888887642 4556778888888887763 33456788888
Q ss_pred CCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccc
Q 003200 634 VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVV 713 (840)
Q Consensus 634 ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 713 (840)
+++|.+... |.. ..++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|..+..+++|
T Consensus 218 ls~n~l~~~-~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L----------- 280 (597)
T 3oja_B 218 ASHNSINVV-RGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL----------- 280 (597)
T ss_dssp CCSSCCCEE-ECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC-----------
T ss_pred ccCCccccc-ccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC-----------
Confidence 888888743 333 24688899999998886 3678889999999999999998888888887777
Q ss_pred ccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCC
Q 003200 714 YREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFL 793 (840)
Q Consensus 714 ~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 793 (840)
+.|+|++|.+++ +|..+..+++|+.|+|++|+++ .+|..++.+++|++|+|++|++++. | +..+++|
T Consensus 281 --------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L 347 (597)
T 3oja_B 281 --------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTL 347 (597)
T ss_dssp --------CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCC
T ss_pred --------CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCC
Confidence 899999999985 5777888999999999999999 7888899999999999999999854 3 6778899
Q ss_pred CeEeccCCcccccCCCCCcCCCcCcCCCCCC-CCCCCC
Q 003200 794 NHLNLSNNNLTGKIPLSTQLQSFNASSFAGN-DLCGAP 830 (840)
Q Consensus 794 ~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn-~lcg~~ 830 (840)
++|++++|++++..+ ...+..+....+.++ ..|+.+
T Consensus 348 ~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 348 KNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp SEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCCCCCTT
T ss_pred CEEEeeCCCCCChhH-HHHHHHHhhhccccccccCCcc
Confidence 999999999988643 234666777788899 999864
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1e-31 Score=309.80 Aligned_cols=209 Identities=20% Similarity=0.218 Sum_probs=135.4
Q ss_pred CCCCCCCCCCCCcc----ccceecCCCCCCEEEEEcCCCCCCCCCccccccccccccCCCCCCEEeCCCCCCCCCCccc-
Q 003200 51 NRLASWTGDGDCCT----WAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPR- 125 (840)
Q Consensus 51 ~~l~~W~~~~~~c~----w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~- 125 (840)
..+++|..+.+||. |.++.|+. .++-... .. .....-..+++++.|++++|.+.. +|.
T Consensus 7 ~~l~~~~~~~~C~~~~~~~~c~~~~~------~i~~~~~-------~~--~~~~~~l~l~~l~~l~l~~~~l~~--lp~~ 69 (597)
T 3oja_B 7 YNVKPRQPEYKCIDSNLQYDCVFYDV------HIDMQTQ-------DV--YFGFEDITLNNQKIVTFKNSTMRK--LPAA 69 (597)
T ss_dssp ----CCCSEECCCCC--CCSEEECSC------EECSSCC-------CC--EESCSSGGGCCCSEEEESSCEESE--ECTH
T ss_pred ccccCCCCCCcCcccCcCceeEecCc------eeccccc-------cc--ccCcccccCCCceEEEeeCCCCCC--cCHH
Confidence 35788987778874 66665541 1111110 11 111122347889999999999884 444
Q ss_pred cccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCC
Q 003200 126 FIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLP 205 (840)
Q Consensus 126 ~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~ 205 (840)
.++.+++|++|+|++|.+++..|..|+.+++|++|++++|.+....+..|+++++|++|+|++|.++.++. ..++.++
T Consensus 70 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--~~~~~l~ 147 (597)
T 3oja_B 70 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR--GIFHNTP 147 (597)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCT
T ss_pred HHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCH--HHhccCC
Confidence 56889999999999999998888899999999999999999988888888888888888888888876543 2235566
Q ss_pred CCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccCccccccchhhhcCCCC
Q 003200 206 SLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSV 285 (840)
Q Consensus 206 ~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 285 (840)
+|++|++++|.+.+.++ ..+..+++|++|++++|.+++.. +..+++|++|++++|.+++ +...++|
T Consensus 148 ~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L 213 (597)
T 3oja_B 148 KLTTLSMSNNNLERIED------DTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAV 213 (597)
T ss_dssp TCCEEECCSSCCCBCCT------TTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTC
T ss_pred CCCEEEeeCCcCCCCCh------hhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchh
Confidence 66666666666655544 45566666666666666655432 3344555666666555543 1223345
Q ss_pred cEEeccc
Q 003200 286 SWLDLSI 292 (840)
Q Consensus 286 ~~L~L~~ 292 (840)
+.|++++
T Consensus 214 ~~L~ls~ 220 (597)
T 3oja_B 214 EELDASH 220 (597)
T ss_dssp SEEECCS
T ss_pred heeeccC
Confidence 5555554
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.98 E-value=8.6e-33 Score=293.17 Aligned_cols=272 Identities=20% Similarity=0.231 Sum_probs=225.6
Q ss_pred CcCCCcHHHHHHHHHhhhcCC-CCCCCCCCC----CCCCCCccccceecCC--------CCCCEEEEEcCCCCCCCCCcc
Q 003200 27 YHVGCLETERRALLRFKQDLQ-DPSNRLASW----TGDGDCCTWAGVACGN--------VTGHILELNLRNPSTSNPRSM 93 (840)
Q Consensus 27 ~~~~~~~~~~~~ll~~k~~~~-~~~~~l~~W----~~~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~~~~~~~~ 93 (840)
+...+..+|+.||++||+++. |+.+...+| ....++|.|.|+.|+. ...+|++|+|+++ .
T Consensus 20 ~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n-------~ 92 (328)
T 4fcg_A 20 QGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV-------P 92 (328)
T ss_dssp C--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS-------C
T ss_pred eccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC-------C
Confidence 345567789999999999984 776777889 4567899999999942 3468999999996 4
Q ss_pred ccccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcc
Q 003200 94 LVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVW 173 (840)
Q Consensus 94 ~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~ 173 (840)
+. .+|+.++++++|++|+|++|.+. .+|..++.+++|++|+|++|.++ .+|..++++++|++|++++|.+....+.
T Consensus 93 l~-~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~ 168 (328)
T 4fcg_A 93 LP-QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE 168 (328)
T ss_dssp CS-SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCS
T ss_pred ch-hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccCh
Confidence 43 78888999999999999999998 58999999999999999999998 7898999999999999999877666555
Q ss_pred ccc---------CCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcC
Q 003200 174 WLS---------GLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDS 244 (840)
Q Consensus 174 ~~~---------~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~ 244 (840)
.+. ++++|++|++++|+++.++ ..+..+++|++|++++|.+++++ ..+..+++|++|++++
T Consensus 169 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp---~~l~~l~~L~~L~L~~N~l~~l~-------~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 169 PLASTDASGEHQGLVNLQSLRLEWTGIRSLP---ASIANLQNLKSLKIRNSPLSALG-------PAIHHLPKLEELDLRG 238 (328)
T ss_dssp CSEEEC-CCCEEESTTCCEEEEEEECCCCCC---GGGGGCTTCCEEEEESSCCCCCC-------GGGGGCTTCCEEECTT
T ss_pred hHhhccchhhhccCCCCCEEECcCCCcCcch---HhhcCCCCCCEEEccCCCCCcCc-------hhhccCCCCCEEECcC
Confidence 443 4899999999999888654 45677888888888888887654 5688888888888888
Q ss_pred CCCCCCCcccccCCCCCcEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcc
Q 003200 245 NHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHL 320 (840)
Q Consensus 245 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~ 320 (840)
|.+.+.+|..++++++|++|++++|.+.+.+|..+..+++|++|++++ |.+.+.+|..++.+++|+.+++..+.+
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~-n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG-CVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTT-CTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCC-CCchhhccHHHhhccCceEEeCCHHHH
Confidence 888888888888888888888888888888888888888888888888 567788888888888888888876544
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=5.2e-31 Score=283.48 Aligned_cols=305 Identities=24% Similarity=0.332 Sum_probs=220.4
Q ss_pred CccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccEE
Q 003200 432 PPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFL 511 (840)
Q Consensus 432 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L 511 (840)
.+.++++|++++|.+... + .+..+++|++|++++|++++..+ +..+++|++|++++|.+++. +.+..
T Consensus 42 ~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i~~~-~~~~~------- 108 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDI-SALQN------- 108 (347)
T ss_dssp HHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCC-GGGTT-------
T ss_pred hcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCcccCc-hHHcC-------
Confidence 344566666666655433 1 25556666666666666655443 34455555555555555432 22222
Q ss_pred EcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcC
Q 003200 512 SVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKF 591 (840)
Q Consensus 512 ~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 591 (840)
+++|++|++++|.+.+..+ +..+++|+.|++++|.....++ .+..+++|++|++++|.+
T Consensus 109 --------------l~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~ 167 (347)
T 4fmz_A 109 --------------LTNLRELYLNEDNISDISP------LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKV 167 (347)
T ss_dssp --------------CTTCSEEECTTSCCCCCGG------GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred --------------CCcCCEEECcCCcccCchh------hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCc
Confidence 4566666666666654322 4457888888888886654443 478888899999999888
Q ss_pred CCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCcc
Q 003200 592 SGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKT 671 (840)
Q Consensus 592 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~ 671 (840)
.+..+ +..+++|++|++++|++.+..+ +..+++|+.|++++|.+.+..+ +. .+++|++|++++|.+++..+
T Consensus 168 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~-~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 168 KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VA-NMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GG-GCTTCCEEECCSSCCCCCGG--
T ss_pred CCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hh-cCCcCCEEEccCCccCCCcc--
Confidence 85543 7788889999999998875433 7888899999999998875444 33 68899999999999886544
Q ss_pred ccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCC
Q 003200 672 ICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFS 751 (840)
Q Consensus 672 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls 751 (840)
+..+++|++|++++|.+++ + ..+..+++| +.|++++|++++. ..+..+++|+.|+++
T Consensus 239 ~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L-------------------~~L~l~~n~l~~~--~~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISD-I-NAVKDLTKL-------------------KMLNVGSNQISDI--SVLNNLSQLNSLFLN 295 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC-------------------CEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred hhcCCCCCEEECCCCccCC-C-hhHhcCCCc-------------------CEEEccCCccCCC--hhhcCCCCCCEEECc
Confidence 7888999999999998874 2 244444444 8999999999864 468889999999999
Q ss_pred CCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCccc
Q 003200 752 FNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLT 804 (840)
Q Consensus 752 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 804 (840)
+|++++..|..++.+++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 296 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 999998888999999999999999999997666 888999999999999875
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=4e-30 Score=276.54 Aligned_cols=307 Identities=24% Similarity=0.314 Sum_probs=181.5
Q ss_pred ccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCC
Q 003200 102 LLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFL 181 (840)
Q Consensus 102 ~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L 181 (840)
+..+++|++|+++++.+.. +|. +..+++|++|++++|++++. |. +.++++|++|++++|.+... ..+.++++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~--~~~-~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS--IQG-IEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred chhcccccEEEEeCCcccc--chh-hhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence 3456777777777777763 343 66677777777777777644 33 77777777777777776653 357777777
Q ss_pred CEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCC
Q 003200 182 EHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPL 261 (840)
Q Consensus 182 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 261 (840)
++|++++|.+...+. +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+ +..+++|
T Consensus 113 ~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~-------~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L 179 (347)
T 4fmz_A 113 RELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDL-------SPLSNMTGLNYLTVTESKVKDVTP--IANLTDL 179 (347)
T ss_dssp SEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCC-------GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTC
T ss_pred CEEECcCCcccCchh----hccCCceeEEECCCCCCcccc-------cchhhCCCCcEEEecCCCcCCchh--hccCCCC
Confidence 777777777766533 556677777777777443332 336667777777777777664433 6667777
Q ss_pred cEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCE
Q 003200 262 ECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLES 341 (840)
Q Consensus 262 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 341 (840)
++|++++|.+.+..+ +..+++|+.|++++ +.+.+..+ +..+++|++|++++|.+.+..+ +..++ +|++
T Consensus 180 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~-n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~-----~L~~ 247 (347)
T 4fmz_A 180 YSLSLNYNQIEDISP--LASLTSLHYFTAYV-NQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLS-----QLTW 247 (347)
T ss_dssp SEEECTTSCCCCCGG--GGGCTTCCEEECCS-SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCT-----TCCE
T ss_pred CEEEccCCccccccc--ccCCCccceeeccc-CCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCC-----CCCE
Confidence 777777776664322 66666666666666 34443322 5555666666666665554332 22222 5555
Q ss_pred EEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcc
Q 003200 342 LDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQ 421 (840)
Q Consensus 342 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~ 421 (840)
|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|+
T Consensus 248 L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 248 LEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDM-EVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGH-HHHHTCTTCSEEECCSSS
T ss_pred EECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcCh-hHhhccccCCEEEccCCc
Confidence 55555555442 2345555555555555555543 234555555555555555543222 245555555555555554
Q ss_pred cceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCC
Q 003200 422 LTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRIS 471 (840)
Q Consensus 422 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~ 471 (840)
++ +..| +..+++|++|++++|.++
T Consensus 323 l~------------------------~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 323 IT------------------------DIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CC------------------------CCGG--GGGCTTCSEESSSCC---
T ss_pred cc------------------------cccC--hhhhhccceeehhhhccc
Confidence 43 3333 566777788888777764
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.4e-33 Score=316.41 Aligned_cols=385 Identities=17% Similarity=0.123 Sum_probs=219.2
Q ss_pred CCCCEEEccCCccccccccc-ccCCCCCCEEEccCCcccccc---ChhhhccCCCCCEEEccCcccceeccCCCCCccCc
Q 003200 361 RNLVTLNLANNSIVGLIPES-FGQLSTLRELQIYDNKLNGTL---SEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQL 436 (840)
Q Consensus 361 ~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~i---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 436 (840)
++|++|++++|.++...... +..+++|++|++++|.+.+.. -...+..+++|++|++++|.+......
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~-------- 74 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH-------- 74 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH--------
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHH--------
Confidence 45777777777776543333 566777777777777765321 012355556666666666655432111
Q ss_pred cEEecccccCCCCCCccccCCC----CCcEEEccCCCCCCCc----chHHHhccCCccEEEccCccccccccc-ccCCCc
Q 003200 437 VALGLHNCYVGSRFPQWLHSQK----HLQYLNLLNSRISDIF----PIRFLKSASQLKFLDVGLNQFHGKISN-LTKNTQ 507 (840)
Q Consensus 437 ~~L~l~~~~~~~~~~~~l~~l~----~L~~L~Ls~n~i~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~ 507 (840)
.....++ +|++|++++|+++... +. .+..+++|++|++++|.+.+.... +..
T Consensus 75 ---------------~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~--- 135 (461)
T 1z7x_W 75 ---------------CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGDAGLQLLCE--- 135 (461)
T ss_dssp ---------------HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHHHHHHHHHH---
T ss_pred ---------------HHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCcCchHHHHHHHH---
Confidence 0111122 5777777777666432 22 224455666666666665432111 000
Q ss_pred ccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCcccc-----CCCCcC
Q 003200 508 LLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWM-----SYQNLK 582 (840)
Q Consensus 508 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~ 582 (840)
......++|++|++++|.+++.....+...+..+++|++|++++|.+++..+..+. ..++|+
T Consensus 136 -------------~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~ 202 (461)
T 1z7x_W 136 -------------GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202 (461)
T ss_dssp -------------HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCC
T ss_pred -------------HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCce
Confidence 00011235666666666666655444555555567777777777776654333332 245677
Q ss_pred EEEccCCcCCCC----CCcccCCCCcccEEEccCCcCcCCC-----CcccccCCCCcEEeCCCCccccc----CChhhhh
Q 003200 583 VLKLSNNKFSGN----LPNSLGSITSLVWLYLRKNRLSGKI-----PISLKNCTALASLDVDENEFVGN----IPTWFGE 649 (840)
Q Consensus 583 ~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~ls~N~l~~~----~p~~~~~ 649 (840)
+|++++|.+++. ++..+..+++|++|++++|++++.. +..+..+++|++|++++|.+++. ++..+.
T Consensus 203 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~- 281 (461)
T 1z7x_W 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR- 281 (461)
T ss_dssp EEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-
T ss_pred EEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-
Confidence 777777777653 3445556677777777777765432 22223466777777777776643 444444
Q ss_pred ccCCccEEEccCCcccccCCccccC-----ccccceeeccccccccc----CCccccccccCcccccccCcccccccCCc
Q 003200 650 RFSRMLVLILRSNQFHGPLPKTICD-----LAFLQILDLADNNLSGA----IPKCISNLTGMVTVKSFTGSVVYREILPL 720 (840)
Q Consensus 650 ~l~~L~~L~l~~n~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~l~~~~~~~~~~~~~~~ 720 (840)
.+++|++|++++|.+++..+..+.. .++|+.|++++|.+++. ++..+..+++|
T Consensus 282 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L------------------ 343 (461)
T 1z7x_W 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL------------------ 343 (461)
T ss_dssp HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC------------------
T ss_pred hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc------------------
Confidence 4677777777777765443333322 25777777777777644 23333333444
Q ss_pred ceEEeCCCCcccccCcccccC-----CCCCCeEeCCCCcccc----cCCcchhccCCCCeEeCCCCcccccCCcccc---
Q 003200 721 VSLLDISRNNFSGEILSEVTN-----LKALQSINFSFNTFTG----RIPESIGTMRALESVDFSVNQLSGEIPQSMS--- 788 (840)
Q Consensus 721 L~~L~Ls~N~l~~~~~~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~--- 788 (840)
+.|++++|++++..+..+.. .++|++|++++|++++ .+|..+..+++|++||+++|++++.-...+.
T Consensus 344 -~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l 422 (461)
T 1z7x_W 344 -LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 422 (461)
T ss_dssp -CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHH
T ss_pred -cEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHh
Confidence 77777777777655554432 5677778888877775 6677777777788888888777654111111
Q ss_pred --CCCCCCeEeccCCcccc
Q 003200 789 --SLTFLNHLNLSNNNLTG 805 (840)
Q Consensus 789 --~l~~L~~L~ls~N~l~g 805 (840)
....|+.|++.++....
T Consensus 423 ~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 423 RQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp TSTTCCCCEEECTTCCCCH
T ss_pred ccCCcchhheeecccccCH
Confidence 12356666666655443
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.7e-32 Score=307.70 Aligned_cols=217 Identities=18% Similarity=0.177 Sum_probs=136.6
Q ss_pred cccEEeccCCcCccc----cCccccCCCCcCEEEccCCcCCCCC-----CcccCCCCcccEEEccCCcCcCC----CCcc
Q 003200 556 SLEGLKLTDNYLQGE----IPDCWMSYQNLKVLKLSNNKFSGNL-----PNSLGSITSLVWLYLRKNRLSGK----IPIS 622 (840)
Q Consensus 556 ~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~----~p~~ 622 (840)
+|++|++++|.+++. ++..+..+++|++|++++|++++.. +..+..+++|++|++++|++++. ++..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 444444444444432 2344445555666666666554321 11222456677777777766643 4556
Q ss_pred cccCCCCcEEeCCCCcccccCChhhhhc----cCCccEEEccCCccccc----CCccccCccccceeecccccccccCCc
Q 003200 623 LKNCTALASLDVDENEFVGNIPTWFGER----FSRMLVLILRSNQFHGP----LPKTICDLAFLQILDLADNNLSGAIPK 694 (840)
Q Consensus 623 l~~l~~L~~L~ls~N~l~~~~p~~~~~~----l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 694 (840)
+..+++|++|++++|.+.+..+..+... .++|++|++++|.+++. ++..+..+++|+.|++++|++++..+.
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 6667777777777777765544444322 25788888888887754 455666778899999999988765444
Q ss_pred cccccccCcccccccCcccccccCCcceEEeCCCCcccc----cCcccccCCCCCCeEeCCCCcccccCCcchh-----c
Q 003200 695 CISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSG----EILSEVTNLKALQSINFSFNTFTGRIPESIG-----T 765 (840)
Q Consensus 695 ~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~----~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-----~ 765 (840)
.+...- ....+.|+.|++++|++++ .+|..+..+++|++|++++|++++.....+. .
T Consensus 360 ~l~~~l--------------~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~ 425 (461)
T 1z7x_W 360 ELCQGL--------------GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 425 (461)
T ss_dssp HHHHHH--------------TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTST
T ss_pred HHHHHH--------------cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccC
Confidence 443200 0012455899999999986 7888888899999999999998865332222 2
Q ss_pred cCCCCeEeCCCCcccccCCcc
Q 003200 766 MRALESVDFSVNQLSGEIPQS 786 (840)
Q Consensus 766 l~~L~~L~Ls~N~l~~~~p~~ 786 (840)
..+|+.|++.++.+....++.
T Consensus 426 ~~~L~~L~~~~~~~~~~~~~~ 446 (461)
T 1z7x_W 426 GCLLEQLVLYDIYWSEEMEDR 446 (461)
T ss_dssp TCCCCEEECTTCCCCHHHHHH
T ss_pred CcchhheeecccccCHHHHHH
Confidence 346888888887776554444
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=7.2e-29 Score=264.43 Aligned_cols=271 Identities=18% Similarity=0.233 Sum_probs=153.9
Q ss_pred CCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEE
Q 003200 106 KHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLD 185 (840)
Q Consensus 106 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 185 (840)
+++++|++++|.++++ .+..++.+++|++|++++|.+++..|..|+++++|++|++++|.+.......+ ++|++|+
T Consensus 52 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEE
T ss_pred CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc---ccccEEE
Confidence 4667777777777653 33456667777777777777776666677777777777777776654433322 5666666
Q ss_pred ccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcEEE
Q 003200 186 LRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLN 265 (840)
Q Consensus 186 Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 265 (840)
+++|++...+ ...+..+++|++|++++|.+..... .+..+..+++|++|++++|.++. +|..+. ++|++|+
T Consensus 128 l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~ 198 (330)
T 1xku_A 128 VHENEITKVR--KSVFNGLNQMIVVELGTNPLKSSGI----ENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELH 198 (330)
T ss_dssp CCSSCCCBBC--HHHHTTCTTCCEEECCSSCCCGGGB----CTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEE
T ss_pred CCCCcccccC--HhHhcCCccccEEECCCCcCCccCc----ChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEE
Confidence 6666665542 2334556666666666665543110 11445556666666666665552 333322 4555555
Q ss_pred cccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEcc
Q 003200 266 LRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMR 345 (840)
Q Consensus 266 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 345 (840)
+++|.+++..+..+..+++|++|++++ +.+.+..+..+..++ +|++|+++
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~-----------------------------~L~~L~L~ 248 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLAKLGLSF-NSISAVDNGSLANTP-----------------------------HLRELHLN 248 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCCEEECCS-SCCCEECTTTGGGST-----------------------------TCCEEECC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCC-CcCceeChhhccCCC-----------------------------CCCEEECC
Confidence 555555554455555555555555555 334433333344333 44455555
Q ss_pred CCcccccCccccCCCCCCCEEEccCCcccccccccccC------CCCCCEEEccCCcccc-ccChhhhccCCCCCEEEcc
Q 003200 346 SSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQ------LSTLRELQIYDNKLNG-TLSEFHFANLTKLSWFRVG 418 (840)
Q Consensus 346 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~L~~n~l~~-~i~~~~~~~l~~L~~L~L~ 418 (840)
+|+++ .+|.++..+++|++|++++|++++..+..|.. .+.++.|++++|++.. .++...|..++.++.++++
T Consensus 249 ~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~ 327 (330)
T 1xku_A 249 NNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327 (330)
T ss_dssp SSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC-
T ss_pred CCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEec
Confidence 55444 35556666777777777777777665555533 2566777777776642 2444466667777777766
Q ss_pred Cc
Q 003200 419 GN 420 (840)
Q Consensus 419 ~n 420 (840)
+|
T Consensus 328 ~N 329 (330)
T 1xku_A 328 NY 329 (330)
T ss_dssp --
T ss_pred cc
Confidence 65
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.3e-29 Score=267.19 Aligned_cols=289 Identities=17% Similarity=0.241 Sum_probs=215.2
Q ss_pred CCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEc
Q 003200 107 HLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDL 186 (840)
Q Consensus 107 ~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 186 (840)
++++++++++.+. .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+....+..|.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~--~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK--AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS--SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc--ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 6888888888887 5676654 68889999998888777778888999999999988888877888888888888888
Q ss_pred cCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCC--CCCcccccCCCCCcEE
Q 003200 187 RSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFN--SSIPDWLYKFSPLECL 264 (840)
Q Consensus 187 s~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L 264 (840)
++|++..++... .++|++|++++|.+...++ ..+..+++|++|++++|.++ +..+..+..+ +|++|
T Consensus 110 ~~n~l~~l~~~~-----~~~L~~L~l~~n~i~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 110 SKNHLVEIPPNL-----PSSLVELRIHDNRIRKVPK------GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177 (332)
T ss_dssp CSSCCCSCCSSC-----CTTCCEEECCSSCCCCCCS------GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred CCCcCCccCccc-----cccCCEEECCCCccCccCH------hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence 888888665422 2688888888888887665 56788888888888888885 3566777777 88888
Q ss_pred EcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEc
Q 003200 265 NLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDM 344 (840)
Q Consensus 265 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 344 (840)
++++|.+++ +|..+. ++|++|++++ +.+.+..+..+..+++|+.|++++|.+.+..+..+..++ +|+.|++
T Consensus 178 ~l~~n~l~~-l~~~~~--~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~L 248 (332)
T 2ft3_A 178 RISEAKLTG-IPKDLP--ETLNELHLDH-NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP-----TLRELHL 248 (332)
T ss_dssp BCCSSBCSS-CCSSSC--SSCSCCBCCS-SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT-----TCCEEEC
T ss_pred ECcCCCCCc-cCcccc--CCCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC-----CCCEEEC
Confidence 888888874 454443 6788888888 567776677778888888888888877776666666555 7777777
Q ss_pred cCCcccccCccccCCCCCCCEEEccCCcccccccccccC------CCCCCEEEccCCcccc-ccChhhhccCCCCCEEEc
Q 003200 345 RSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQ------LSTLRELQIYDNKLNG-TLSEFHFANLTKLSWFRV 417 (840)
Q Consensus 345 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~L~~n~l~~-~i~~~~~~~l~~L~~L~L 417 (840)
++|+++ .+|..+..+++|++|++++|++++..+..|.. .++|+.|++++|++.. .++...|..+++|+.+++
T Consensus 249 ~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l 327 (332)
T 2ft3_A 249 DNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327 (332)
T ss_dssp CSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC
T ss_pred CCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhc
Confidence 777776 46666777777888888888777766655554 2567777777777651 344456777777777777
Q ss_pred cCcc
Q 003200 418 GGNQ 421 (840)
Q Consensus 418 ~~n~ 421 (840)
++|+
T Consensus 328 ~~n~ 331 (332)
T 2ft3_A 328 GNYK 331 (332)
T ss_dssp ----
T ss_pred cccc
Confidence 6653
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.5e-29 Score=266.12 Aligned_cols=246 Identities=19% Similarity=0.279 Sum_probs=120.0
Q ss_pred CCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCccc
Q 003200 527 SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLV 606 (840)
Q Consensus 527 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 606 (840)
+++++|++++|.+.+..+.. +..+++|++|++++|.+++..|..|.++++|++|++++|+++ .+|..+. ++|+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~ 126 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDD----FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLV 126 (332)
T ss_dssp TTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCC
T ss_pred CCCeEEECCCCcCCccCHhH----hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCC
Confidence 34444444444444333322 233455555555555555444555555555555555555555 2333222 4555
Q ss_pred EEEccCCcCcCCCCcccccCCCCcEEeCCCCcccc--cCChhhhhccCCccEEEccCCcccccCCccccCccccceeecc
Q 003200 607 WLYLRKNRLSGKIPISLKNCTALASLDVDENEFVG--NIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLA 684 (840)
Q Consensus 607 ~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~--~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls 684 (840)
+|++++|++++..+..+.++++|++|++++|.++. ..|..+. .+ +|+.|++++|++++ +|..+. ++|+.|+++
T Consensus 127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~ 201 (332)
T 2ft3_A 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD-GL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLD 201 (332)
T ss_dssp EEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC-SC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCC
T ss_pred EEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccccc-CC-ccCEEECcCCCCCc-cCcccc--CCCCEEECC
Confidence 55555555554444445555555555555555532 3333332 22 55555555555553 233222 455555555
Q ss_pred cccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchh
Q 003200 685 DNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIG 764 (840)
Q Consensus 685 ~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 764 (840)
+|++++..|..+..+++| +.|++++|++++..+..+..+++|+.|++++|+++ .+|..++
T Consensus 202 ~n~i~~~~~~~l~~l~~L-------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 202 HNKIQAIELEDLLRYSKL-------------------YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp SSCCCCCCTTSSTTCTTC-------------------SCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred CCcCCccCHHHhcCCCCC-------------------CEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 555554444444444444 45555555555444445555555555555555555 4555555
Q ss_pred ccCCCCeEeCCCCcccccCCccccCC------CCCCeEeccCCccc
Q 003200 765 TMRALESVDFSVNQLSGEIPQSMSSL------TFLNHLNLSNNNLT 804 (840)
Q Consensus 765 ~l~~L~~L~Ls~N~l~~~~p~~l~~l------~~L~~L~ls~N~l~ 804 (840)
.+++|++|++++|++++..+..+... ..|+.|++++|++.
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 55555555555555554433333322 34555555555544
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.7e-28 Score=261.57 Aligned_cols=268 Identities=16% Similarity=0.224 Sum_probs=207.2
Q ss_pred CcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEE
Q 003200 506 TQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLK 585 (840)
Q Consensus 506 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 585 (840)
.+++.++++++.+.......++++++|++++|++++..+.. +..+++|++|++++|.+++..|..|..+++|++|+
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTT----TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhh----hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 35666777777666544445677888888888887765533 44578888888888888877788888888888888
Q ss_pred ccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccc--cCChhhhhccCCccEEEccCCc
Q 003200 586 LSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVG--NIPTWFGERFSRMLVLILRSNQ 663 (840)
Q Consensus 586 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~--~~p~~~~~~l~~L~~L~l~~n~ 663 (840)
+++|+++ .+|..+. ++|++|++++|++++..+..+.++++|++|++++|.+.. ..+..+. .+++|++|++++|.
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTN 182 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG-GCTTCCEEECCSSC
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhcc-CCCCcCEEECCCCc
Confidence 8888888 4555443 688888888888887777778888888888888888853 5555555 68888888888888
Q ss_pred ccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCC
Q 003200 664 FHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLK 743 (840)
Q Consensus 664 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~ 743 (840)
++. +|..+. ++|+.|++++|++++..|..+..+++| +.|++++|++++..+..+..++
T Consensus 183 l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------------~~L~Ls~n~l~~~~~~~~~~l~ 240 (330)
T 1xku_A 183 ITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL-------------------AKLGLSFNSISAVDNGSLANTP 240 (330)
T ss_dssp CCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC-------------------CEEECCSSCCCEECTTTGGGST
T ss_pred ccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC-------------------CEEECCCCcCceeChhhccCCC
Confidence 875 444443 788888888888887777777776666 8888888888877777888888
Q ss_pred CCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccC------CCCCCeEeccCCccc
Q 003200 744 ALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSS------LTFLNHLNLSNNNLT 804 (840)
Q Consensus 744 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~ls~N~l~ 804 (840)
+|++|++++|+++ .+|..+..+++|++|++++|++++..+..+.. .+.|+.+++++|++.
T Consensus 241 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 241 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 8888888888888 78888888888888888888888665555543 367888888888875
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.5e-28 Score=260.52 Aligned_cols=227 Identities=18% Similarity=0.228 Sum_probs=202.9
Q ss_pred CCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEe
Q 003200 554 TKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLD 633 (840)
Q Consensus 554 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 633 (840)
.+.++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|+++ .+|..+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467889999999988 67778888999999999999998 78888999999999999999998 7788899999999999
Q ss_pred CCCCcccccCChhhhh--------ccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCccc
Q 003200 634 VDENEFVGNIPTWFGE--------RFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTV 705 (840)
Q Consensus 634 ls~N~l~~~~p~~~~~--------~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l 705 (840)
+++|++.+.+|..+.. .+++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|..+..+++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L--- 231 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL--- 231 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTC---
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCC---
Confidence 9998888888887641 4899999999999998 78888999999999999999998 566677777666
Q ss_pred ccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCc
Q 003200 706 KSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQ 785 (840)
Q Consensus 706 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 785 (840)
+.|++++|++.+.+|..++++++|+.|++++|++.+.+|..++++++|++|+|++|++.+.+|+
T Consensus 232 ----------------~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 232 ----------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp ----------------CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred ----------------CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCeEeccCCccc
Q 003200 786 SMSSLTFLNHLNLSNNNLT 804 (840)
Q Consensus 786 ~l~~l~~L~~L~ls~N~l~ 804 (840)
.+.++++|+.+++..|.+.
T Consensus 296 ~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 296 LIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp GGGGSCTTCEEECCGGGSC
T ss_pred HHhhccCceEEeCCHHHHH
Confidence 9999999999999876543
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=6.9e-28 Score=253.96 Aligned_cols=232 Identities=22% Similarity=0.273 Sum_probs=182.6
Q ss_pred CcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCC--CCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEE
Q 003200 555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGN--LPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASL 632 (840)
Q Consensus 555 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 632 (840)
+++++|++++|.++...+..|.++++|++|++++|+++.. .+..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 4677777777777755555577788888888888877633 2455666788888888888877 466677888888888
Q ss_pred eCCCCcccccCC-hhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccc-cCCccccccccCcccccccC
Q 003200 633 DVDENEFVGNIP-TWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSG-AIPKCISNLTGMVTVKSFTG 710 (840)
Q Consensus 633 ~ls~N~l~~~~p-~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~~~ 710 (840)
++++|++++..+ ..+. .+++|++|++++|.+.+..|..+..+++|++|++++|.+.+ .+|..+..+++|
T Consensus 107 ~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-------- 177 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-------- 177 (306)
T ss_dssp ECTTSEEESSTTTTTTT-TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC--------
T ss_pred ECCCCcccccccchhhh-hccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC--------
Confidence 888888875544 3343 67888888888888888888888888888888888888876 567777776666
Q ss_pred cccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCC
Q 003200 711 SVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSL 790 (840)
Q Consensus 711 ~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 790 (840)
+.|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++||+++|++++..|..+..+
T Consensus 178 -----------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 178 -----------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp -----------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred -----------CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 888888888888778888888888888888888887777778888888888888888888888888888
Q ss_pred C-CCCeEeccCCcccccC
Q 003200 791 T-FLNHLNLSNNNLTGKI 807 (840)
Q Consensus 791 ~-~L~~L~ls~N~l~g~i 807 (840)
+ +|++|++++|++++..
T Consensus 247 ~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 247 PSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CTTCCEEECTTCCEECSG
T ss_pred hccCCEEEccCCCeeccc
Confidence 4 8888888888887753
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.6e-28 Score=264.32 Aligned_cols=276 Identities=20% Similarity=0.199 Sum_probs=226.7
Q ss_pred ccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEcc
Q 003200 508 LLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLS 587 (840)
Q Consensus 508 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 587 (840)
....+.+++.++.......+++++|++++|++++..+.. +..+++|++|++++|.+++..|..|.++++|++|+++
T Consensus 33 ~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 33 NGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSD----LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp TSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHH----hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 344666777777655556678999999999988765533 4568999999999999998888889999999999999
Q ss_pred CCcCCCCCCcccCCCCcccEEEccCCcCcCCCC-cccccCCCCcEEeCCCCc-ccccCChhhhhccCCccEEEccCCccc
Q 003200 588 NNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIP-ISLKNCTALASLDVDENE-FVGNIPTWFGERFSRMLVLILRSNQFH 665 (840)
Q Consensus 588 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~ls~N~-l~~~~p~~~~~~l~~L~~L~l~~n~l~ 665 (840)
+|++++..+..++.+++|++|++++|++++..+ ..+.++++|++|++++|. +.+..+..+. .+++|++|++++|+++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDASDLQ 187 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEETTCC
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc-CCCCCCEEECCCCCcC
Confidence 999997666668999999999999999985444 478899999999999995 6655555665 7899999999999999
Q ss_pred ccCCccccCccccceeecccccccccCCcc-ccccccCcccccccCcccccccCCcceEEeCCCCcccccCccccc---C
Q 003200 666 GPLPKTICDLAFLQILDLADNNLSGAIPKC-ISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVT---N 741 (840)
Q Consensus 666 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~---~ 741 (840)
+..|..+..+++|+.|++++|++. .+|.. +..++ +|+.|++++|++++..+..+. .
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~-------------------~L~~L~L~~n~l~~~~~~~l~~~~~ 247 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTS-------------------SVECLELRDTDLDTFHFSELSTGET 247 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTT-------------------TEEEEEEESCBCTTCCCC------C
T ss_pred ccCHHHHhccccCCeecCCCCccc-cchhhhhhhcc-------------------cccEEECCCCccccccccccccccc
Confidence 999999999999999999999986 44433 33344 449999999999976665543 4
Q ss_pred CCCCCeEeCCCCcccc----cCCcchhccCCCCeEeCCCCcccccCCcc-ccCCCCCCeEeccCCcccccCCC
Q 003200 742 LKALQSINFSFNTFTG----RIPESIGTMRALESVDFSVNQLSGEIPQS-MSSLTFLNHLNLSNNNLTGKIPL 809 (840)
Q Consensus 742 l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip~ 809 (840)
...++.++++++.+.+ .+|+.++.+++|++||+++|+++ .+|.. +..+++|++|++++|++++..|.
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 5678888999988876 47888999999999999999999 67766 58999999999999999998773
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.4e-27 Score=255.13 Aligned_cols=288 Identities=21% Similarity=0.215 Sum_probs=174.5
Q ss_pred CCCCCCCccccceecCCCCCCEEEEEcCCCCCCCCCccccccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcE
Q 003200 56 WTGDGDCCTWAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRY 135 (840)
Q Consensus 56 W~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~ 135 (840)
|.....+|.|.|+ |+. ++ .-...+|..+. ++|++|++++|.++++ .+..+..+++|++
T Consensus 23 ~~~~~~~C~~~~~-c~~----------~~--------~~l~~iP~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~ 80 (353)
T 2z80_A 23 SNQASLSCDRNGI-CKG----------SS--------GSLNSIPSGLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQA 80 (353)
T ss_dssp ----CCEECTTSE-EEC----------CS--------TTCSSCCTTCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCE
T ss_pred CCccCCCCCCCeE-eeC----------CC--------CCccccccccc--ccCcEEECCCCcCccc-CHHHhccCCCCCE
Confidence 4345567899987 642 22 12234454443 4788888888888743 3336777888888
Q ss_pred EeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCC
Q 003200 136 LNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNC 215 (840)
Q Consensus 136 L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n 215 (840)
|++++|++++..|..|+++++|++|++++|.++......|.++++|++|++++|++..
T Consensus 81 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---------------------- 138 (353)
T 2z80_A 81 LVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT---------------------- 138 (353)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS----------------------
T ss_pred EECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc----------------------
Confidence 8888888877777777777777777777777665444445555555555444444433
Q ss_pred CCCcCCCCCCCCCCcccCCCCCCEEECcCC-CCCCCCcccccCCCCCcEEEcccCccccccchhhhcCCCCcEEeccccc
Q 003200 216 SLHHFPTLASPIPRGLQNLTSLKHLDLDSN-HFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINI 294 (840)
Q Consensus 216 ~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 294 (840)
++.. ..+..+++|++|++++| .+.+..+..+.++++|++|++++|.+++..|..+..+++|++|++++ +
T Consensus 139 ----l~~~-----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n 208 (353)
T 2z80_A 139 ----LGET-----SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM-K 208 (353)
T ss_dssp ----SCSS-----CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC-S
T ss_pred ----cCch-----hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC-C
Confidence 2210 25677788888888887 35555566777777788888877777766677777777777777776 3
Q ss_pred CccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCCCCCEEEccCCccc
Q 003200 295 GLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIV 374 (840)
Q Consensus 295 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 374 (840)
.+.......+..+++|+.|++++|.+.+..+..+.. ....+.++.++++++.+.
T Consensus 209 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------------~~~~~~l~~l~L~~~~l~ 262 (353)
T 2z80_A 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST--------------------------GETNSLIKKFTFRNVKIT 262 (353)
T ss_dssp CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------------CCCCCCEEEEESCBCC
T ss_pred ccccchhhhhhhcccccEEECCCCcccccccccccc--------------------------ccccchhhcccccccccc
Confidence 333222222333555555555555544432221111 122445666666666655
Q ss_pred c----cccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcccce
Q 003200 375 G----LIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTF 424 (840)
Q Consensus 375 ~----~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~ 424 (840)
+ .+|..+.++++|++|++++|+++ .++...|.++++|++|++++|++.+
T Consensus 263 ~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 263 DESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence 4 24556667777777777777776 5665556677777777777776654
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=5.4e-28 Score=254.77 Aligned_cols=277 Identities=19% Similarity=0.232 Sum_probs=217.7
Q ss_pred cEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccc--cCccccCCCCcCEEEc
Q 003200 509 LFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGE--IPDCWMSYQNLKVLKL 586 (840)
Q Consensus 509 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L 586 (840)
+.++++++.++......++++++|++++|.+....+.. +..+++|++|++++|.++.. .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGV----FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhH----hhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 34566666665555445678888888888887544332 34578899999999988733 3566777889999999
Q ss_pred cCCcCCCCCCcccCCCCcccEEEccCCcCcCCCC-cccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCccc
Q 003200 587 SNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIP-ISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFH 665 (840)
Q Consensus 587 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~ 665 (840)
++|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..|..+. .+++|++|++++|.+.
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCccc
Confidence 999888 456668888999999999999886554 5788889999999999999877777766 6889999999999998
Q ss_pred c-cCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCC
Q 003200 666 G-PLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKA 744 (840)
Q Consensus 666 ~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~ 744 (840)
+ ..|..+..+++|+.|++++|++++..|..+..+++| +.|++++|++++..+..+..+++
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------------~~L~L~~N~l~~~~~~~~~~l~~ 224 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL-------------------QVLNMSHNNFFSLDTFPYKCLNS 224 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC-------------------CEEECTTSCCSBCCSGGGTTCTT
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC-------------------CEEECCCCccCccChhhccCccc
Confidence 7 678888999999999999999997778888877776 89999999999877778899999
Q ss_pred CCeEeCCCCcccccCCcchhccC-CCCeEeCCCCcccccCC--ccccCCCCCCeEeccCCcccccCCCC
Q 003200 745 LQSINFSFNTFTGRIPESIGTMR-ALESVDFSVNQLSGEIP--QSMSSLTFLNHLNLSNNNLTGKIPLS 810 (840)
Q Consensus 745 L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~ls~N~l~g~ip~~ 810 (840)
|+.|++++|++++..|..+..++ +|++|++++|++++.-+ ....-+...+.+.+..+.+....|..
T Consensus 225 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 293 (306)
T ss_dssp CCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred CCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence 99999999999998998898884 89999999999986432 11222334555666677777777754
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2e-29 Score=292.24 Aligned_cols=131 Identities=15% Similarity=0.193 Sum_probs=62.8
Q ss_pred CCCCCcEEEcccCccccccchhhhcC-C-CCcEEecccccCccc-cCcccccCCCCCcEEEcCCCcccccc----hHHHH
Q 003200 257 KFSPLECLNLRNNSLQGTISDAIGNL-T-SVSWLDLSINIGLQG-RIPRSMANFCNLKSVNLRGVHLSQEI----SEILD 329 (840)
Q Consensus 257 ~l~~L~~L~L~~n~l~~~~~~~l~~l-~-~L~~L~L~~n~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~----~~~~~ 329 (840)
.+++|++|++++|.+++..+..+... + +|++|++++|..... .++.....+++|++|++++|.+++.. +....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 56667777777776665555555542 3 377777766432211 12222335566666666666655442 22222
Q ss_pred hhccCCCCCCCEEEccCCccc----ccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEcc
Q 003200 330 IFSGCVSNGLESLDMRSSSIY----GHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIY 393 (840)
Q Consensus 330 ~~~~~~~~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 393 (840)
.++ +|++|++++|.++ +.++..+..+++|++|++++|.+.+ ++..+..+++|++|+++
T Consensus 190 ~~~-----~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 190 HNT-----SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HCC-----CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEEC
T ss_pred cCC-----CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhccc
Confidence 222 4555555444443 1122223334444444444444443 23344444444444444
No 56
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2.9e-29 Score=290.87 Aligned_cols=364 Identities=14% Similarity=0.078 Sum_probs=190.9
Q ss_pred CCCccccceecCCCCCCEEEEEcCCCCCCCCCccccccccccccCCCCCCEEeCCCCCCC---CCCcccccc--------
Q 003200 60 GDCCTWAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQ---GVQIPRFIG-------- 128 (840)
Q Consensus 60 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~---~~~~p~~l~-------- 128 (840)
.-|++|.++.+. ..+ .+.+.+ ......+..+..+++|++|+|+++... + .+|...+
T Consensus 39 ~vck~W~~~~~~--~~~--~l~~~~--------~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~~~~~~l~ 105 (592)
T 3ogk_B 39 LVCRRWFKIDSE--TRE--HVTMAL--------CYTATPDRLSRRFPNLRSLKLKGKPRAAMFN-LIPENWGGYVTPWVT 105 (592)
T ss_dssp TSCHHHHHHHHH--HCC--EEEESC--------GGGSCHHHHHHHCTTCSEEEEECSCGGGGGT-CSCTTSCCBCHHHHH
T ss_pred HHhHHHHHhhhc--ccc--EEEEee--------ccccChHHHHHhCCCCeEEEecCCcchhhcc-cccccccccchHHHH
Confidence 456689999653 222 233333 222333445667888888888775321 1 1222211
Q ss_pred ----CCCCCcEEeccCCcccCCCCCCCCC-CC-CCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcC
Q 003200 129 ----SMRNLRYLNLSDTQFVGMIPPQLGN-LS-DLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATN 202 (840)
Q Consensus 129 ----~l~~L~~L~Ls~n~i~~~~p~~l~~-l~-~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 202 (840)
.+++|++|+|++|.+++..+..+.. ++ +|++|++++|. ......+.....
T Consensus 106 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~------------------------~~~~~~l~~~~~ 161 (592)
T 3ogk_B 106 EISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS------------------------GFTTDGLLSIVT 161 (592)
T ss_dssp HHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE------------------------EEEHHHHHHHHH
T ss_pred HHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC------------------------CcCHHHHHHHHh
Confidence 4555566666555554433333332 12 25555555443 111111222233
Q ss_pred CCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCC----CcccccCCCCCcEEEcccCccccccchh
Q 003200 203 TLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSS----IPDWLYKFSPLECLNLRNNSLQGTISDA 278 (840)
Q Consensus 203 ~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~~~ 278 (840)
.+++|++|+|++|.+.+... ..++..+..+++|++|++++|.+++. ++..+.++++|++|++++|.+.+ ++..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~--~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~ 238 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDG--KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGF 238 (592)
T ss_dssp HCTTCSEEECTTCEEECCCS--HHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHH
T ss_pred hCCCCCEEECccccccCcch--hHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHH
Confidence 45566666666665543311 00112345567777777777776532 33445567778888887777764 5677
Q ss_pred hhcCCCCcEEecccccCc--cccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCc-c
Q 003200 279 IGNLTSVSWLDLSINIGL--QGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLT-D 355 (840)
Q Consensus 279 l~~l~~L~~L~L~~n~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~ 355 (840)
+..+++|++|+++..... .+..+..+..+++|+.++++++ ....++..+..++ +|++|++++|.+++... .
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~-----~L~~L~Ls~~~l~~~~~~~ 312 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAA-----QIRKLDLLYALLETEDHCT 312 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGG-----GCCEEEETTCCCCHHHHHH
T ss_pred HhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcC-----CCcEEecCCCcCCHHHHHH
Confidence 777788888887752211 1234455666777777777664 2334444444444 66667766666544332 2
Q ss_pred ccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccC-----------CccccccChhhhccCCCCCEEEccCcccce
Q 003200 356 QLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYD-----------NKLNGTLSEFHFANLTKLSWFRVGGNQLTF 424 (840)
Q Consensus 356 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-----------n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~ 424 (840)
.+..+++|++|+++++...+.++..+..+++|++|++++ +.+++......+..+++|++|+++.+.++.
T Consensus 313 ~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~ 392 (592)
T 3ogk_B 313 LIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN 392 (592)
T ss_dssp HHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH
T ss_pred HHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH
Confidence 345667777777763322222333345566777777772 344322222223446666666665555543
Q ss_pred eccCCCCCccCccEEecccccCCCCCCccccC-CCCCcEEEcc----CCCCCCCcc----hHHHhccCCccEEEccCc
Q 003200 425 EVKHDWIPPFQLVALGLHNCYVGSRFPQWLHS-QKHLQYLNLL----NSRISDIFP----IRFLKSASQLKFLDVGLN 493 (840)
Q Consensus 425 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~Ls----~n~i~~~~~----~~~~~~l~~L~~L~l~~n 493 (840)
. .+..+.. +++|++|+++ .|++++... ..+...+++|+.|++++|
T Consensus 393 ~------------------------~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~ 446 (592)
T 3ogk_B 393 E------------------------SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446 (592)
T ss_dssp H------------------------HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECC
T ss_pred H------------------------HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecC
Confidence 2 2222322 5666666664 455555321 122355677777777643
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.2e-26 Score=258.42 Aligned_cols=228 Identities=20% Similarity=0.213 Sum_probs=163.5
Q ss_pred CcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeC
Q 003200 555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDV 634 (840)
Q Consensus 555 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 634 (840)
++++.|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|+|++|++++..+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 45666777777776666666777777777777777777666666777777777777777777555556667777777777
Q ss_pred CCCcccccCChhhhhccCCccEEEccC-CcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccc
Q 003200 635 DENEFVGNIPTWFGERFSRMLVLILRS-NQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVV 713 (840)
Q Consensus 635 s~N~l~~~~p~~~~~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 713 (840)
++|++.+..+..+. .+++|+.|++++ |.+....+..+..+++|+.|++++|++++ +| .+..+++|
T Consensus 155 ~~N~l~~~~~~~~~-~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L----------- 220 (452)
T 3zyi_A 155 RNNPIESIPSYAFN-RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGL----------- 220 (452)
T ss_dssp CSCCCCEECTTTTT-TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTC-----------
T ss_pred CCCCcceeCHhHHh-cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccc-----------
Confidence 77777643333333 677777777776 34444444567777888888888888773 33 24444444
Q ss_pred ccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCC
Q 003200 714 YREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFL 793 (840)
Q Consensus 714 ~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 793 (840)
+.|+|++|++++..|..|.++++|+.|++++|++++..|..|..+++|+.|||++|++++..+..+..+++|
T Consensus 221 --------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 221 --------EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp --------CEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred --------cEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 788888888887778888888888888888888888778888888888888888888886666677888888
Q ss_pred CeEeccCCccc
Q 003200 794 NHLNLSNNNLT 804 (840)
Q Consensus 794 ~~L~ls~N~l~ 804 (840)
++|++++|++.
T Consensus 293 ~~L~L~~Np~~ 303 (452)
T 3zyi_A 293 VELHLHHNPWN 303 (452)
T ss_dssp CEEECCSSCEE
T ss_pred CEEEccCCCcC
Confidence 88888888764
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=4.6e-27 Score=244.82 Aligned_cols=235 Identities=18% Similarity=0.216 Sum_probs=171.1
Q ss_pred CcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCc-CcCCCCcccccCCCCcEEe
Q 003200 555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNR-LSGKIPISLKNCTALASLD 633 (840)
Q Consensus 555 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~ 633 (840)
+++++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|+ +....|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 467777777777776666667777777777777777776667777777777777777776 6655566777777777777
Q ss_pred CCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccc
Q 003200 634 VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVV 713 (840)
Q Consensus 634 ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 713 (840)
+++|.+++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|
T Consensus 112 l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----------- 179 (285)
T 1ozn_A 112 LDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL----------- 179 (285)
T ss_dssp CTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-----------
T ss_pred CCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc-----------
Confidence 777777765555554 67777777777777777666677778888888888888875555567666666
Q ss_pred ccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCC
Q 003200 714 YREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFL 793 (840)
Q Consensus 714 ~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 793 (840)
+.|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|++|++++|++....+.. .-...+
T Consensus 180 --------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l 250 (285)
T 1ozn_A 180 --------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWL 250 (285)
T ss_dssp --------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHH
T ss_pred --------CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHH
Confidence 78888888888777888888888888888888888766677888888888888888887543321 111234
Q ss_pred CeEeccCCcccccCCCC
Q 003200 794 NHLNLSNNNLTGKIPLS 810 (840)
Q Consensus 794 ~~L~ls~N~l~g~ip~~ 810 (840)
+.+..+.+.+.+..|..
T Consensus 251 ~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 251 QKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp HHCCSEECCCBEEESGG
T ss_pred HhcccccCccccCCchH
Confidence 55557778888777763
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.5e-27 Score=246.79 Aligned_cols=254 Identities=19% Similarity=0.164 Sum_probs=126.3
Q ss_pred EEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCC
Q 003200 510 FLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNN 589 (840)
Q Consensus 510 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 589 (840)
.++.+++.++......++++++|++++|.+++..+.. +..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 15 ~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAAS----FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp EEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred EEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHH----cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 4445555444433333445555555555555433322 223455555555555555544555555555555555555
Q ss_pred c-CCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccC
Q 003200 590 K-FSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPL 668 (840)
Q Consensus 590 ~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~ 668 (840)
+ +....|..+..+++|++|++++|++++..|..+.++++|++|++++|++++..+..+. .+++|++|++++|++++..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR-DLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhc-cCCCccEEECCCCcccccC
Confidence 4 4444444555555555555555555544455555555555555555555533333333 4555555555555555444
Q ss_pred CccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeE
Q 003200 669 PKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSI 748 (840)
Q Consensus 669 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 748 (840)
+..+..+++|+.|++++|++++..|..+..+++| +.|++++|++++..+..+..+++|+.|
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L 230 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL-------------------MTLYLFANNLSALPTEALAPLRALQYL 230 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-------------------CEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccc-------------------cEeeCCCCcCCcCCHHHcccCcccCEE
Confidence 4445555555555555555554445555444444 555555555554444445555555555
Q ss_pred eCCCCcccccCCcchhccCCCCeEeCCCCcccccCCcccc
Q 003200 749 NFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMS 788 (840)
Q Consensus 749 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 788 (840)
++++|++....+.. .-...++.++.+.+.+....|+.+.
T Consensus 231 ~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 231 RLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp ECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred eccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhC
Confidence 55555555332211 1112333344445555555555443
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.1e-26 Score=257.72 Aligned_cols=227 Identities=21% Similarity=0.194 Sum_probs=140.4
Q ss_pred CcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeC
Q 003200 555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDV 634 (840)
Q Consensus 555 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 634 (840)
++++.|++++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 34555555555555555555556666666666666665555555556666666666666665444445556666666666
Q ss_pred CCCcccccCChhhhhccCCccEEEccCC-cccccCCccccCccccceeecccccccccCCccccccccCcccccccCccc
Q 003200 635 DENEFVGNIPTWFGERFSRMLVLILRSN-QFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVV 713 (840)
Q Consensus 635 s~N~l~~~~p~~~~~~l~~L~~L~l~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 713 (840)
++|++.+..+..+. .+++|++|++++| .+....+..|.++++|+.|++++|+++ .+| .+..+++|
T Consensus 144 ~~N~i~~~~~~~~~-~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L----------- 209 (440)
T 3zyj_A 144 RNNPIESIPSYAFN-RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKL----------- 209 (440)
T ss_dssp CSCCCCEECTTTTT-TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSC-----------
T ss_pred CCCcccccCHHHhh-hCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCccc-----------
Confidence 66666533333333 5566666666653 333333445666677777777777666 444 23333333
Q ss_pred ccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCC
Q 003200 714 YREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFL 793 (840)
Q Consensus 714 ~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 793 (840)
+.|+|++|++++..|..|.++++|+.|+|++|++++..|..|.++++|++|||++|++++..+..+..+++|
T Consensus 210 --------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 210 --------DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp --------CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred --------CEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 677777777776667777777777777777777777667777777777777777777776555666777777
Q ss_pred CeEeccCCcc
Q 003200 794 NHLNLSNNNL 803 (840)
Q Consensus 794 ~~L~ls~N~l 803 (840)
+.|++++|++
T Consensus 282 ~~L~L~~Np~ 291 (440)
T 3zyj_A 282 ERIHLHHNPW 291 (440)
T ss_dssp CEEECCSSCE
T ss_pred CEEEcCCCCc
Confidence 7777777765
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=2.8e-26 Score=255.49 Aligned_cols=249 Identities=18% Similarity=0.184 Sum_probs=219.6
Q ss_pred ccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEcc
Q 003200 508 LLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLS 587 (840)
Q Consensus 508 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 587 (840)
...++..+..++......++++++|++++|++.+..+.. +..+++|++|++++|.+++..+..|.++++|++|+|+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADT----FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHH----cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 445666666666655555678999999999998876654 4568999999999999999888999999999999999
Q ss_pred CCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCccccc
Q 003200 588 NNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGP 667 (840)
Q Consensus 588 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~ 667 (840)
+|++++..+..|..+++|++|++++|++++..+..|.++++|+.|++++|...+.++...+..+++|++|++++|++++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 99999888888999999999999999999777778999999999999996666677766555899999999999999865
Q ss_pred CCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCe
Q 003200 668 LPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQS 747 (840)
Q Consensus 668 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 747 (840)
| .+..+++|+.|++++|++++..|..+.++++| +.|++++|++++..+..|..+++|+.
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------------~~L~L~~n~l~~~~~~~~~~l~~L~~ 270 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL-------------------KKLWVMNSQVSLIERNAFDGLASLVE 270 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTC-------------------CEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCC-------------------CEEEeCCCcCceECHHHhcCCCCCCE
Confidence 3 58889999999999999998888889888777 99999999999999999999999999
Q ss_pred EeCCCCcccccCCcchhccCCCCeEeCCCCcccc
Q 003200 748 INFSFNTFTGRIPESIGTMRALESVDFSVNQLSG 781 (840)
Q Consensus 748 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 781 (840)
|+|++|++++..+..|..+++|+.|+|++|++..
T Consensus 271 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 271 LNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp EECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred EECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 9999999998888889999999999999998753
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=4.8e-26 Score=252.58 Aligned_cols=248 Identities=21% Similarity=0.209 Sum_probs=218.8
Q ss_pred ccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEcc
Q 003200 508 LLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLS 587 (840)
Q Consensus 508 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 587 (840)
...++..+..++......+++++.|++++|++.+..+.. +..+++|++|++++|.+++..+..|.++++|++|+|+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNS----FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTT----TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHH----hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 456667777776655556788999999999998776544 4568999999999999998888899999999999999
Q ss_pred CCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCccccc
Q 003200 588 NNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGP 667 (840)
Q Consensus 588 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~ 667 (840)
+|++++..+..|..+++|++|++++|+++...+..|.++++|++|++++|...+.++...+..+++|++|++++|.++..
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 99999877778999999999999999999777778999999999999997666677765555899999999999999854
Q ss_pred CCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCe
Q 003200 668 LPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQS 747 (840)
Q Consensus 668 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 747 (840)
| .+..+++|+.|++++|++++..|..+.++++| +.|++++|++++..+..|.++++|+.
T Consensus 201 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------------~~L~L~~n~l~~~~~~~~~~l~~L~~ 259 (440)
T 3zyj_A 201 -P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL-------------------QKLWMIQSQIQVIERNAFDNLQSLVE 259 (440)
T ss_dssp -C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTC-------------------CEEECTTCCCCEECTTSSTTCTTCCE
T ss_pred -c-ccCCCcccCEEECCCCccCccChhhhccCccC-------------------CEEECCCCceeEEChhhhcCCCCCCE
Confidence 4 47889999999999999998888899888877 99999999999999999999999999
Q ss_pred EeCCCCcccccCCcchhccCCCCeEeCCCCccc
Q 003200 748 INFSFNTFTGRIPESIGTMRALESVDFSVNQLS 780 (840)
Q Consensus 748 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 780 (840)
|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus 260 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 260 INLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred EECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 999999999888888999999999999999975
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.5e-28 Score=257.54 Aligned_cols=244 Identities=21% Similarity=0.256 Sum_probs=163.8
Q ss_pred CCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCc-cccCcccc-------CCCCcCEEEccCCcCCCCCCccc
Q 003200 528 NLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQ-GEIPDCWM-------SYQNLKVLKLSNNKFSGNLPNSL 599 (840)
Q Consensus 528 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~l 599 (840)
+|+++++++|.+ .+|..+.. .|+.|++++|.++ ..+|..+. ++++|++|++++|++++.+|..+
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~------~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTD------IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHH------HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred CceeEeeccccc--ccHHHHHH------HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 345555555555 34433322 2666666666663 33444333 56667777777777666666654
Q ss_pred --CCCCcccEEEccCCcCcCCCCcccccC-----CCCcEEeCCCCcccccCChhhhhccCCccEEEccCCccccc--CCc
Q 003200 600 --GSITSLVWLYLRKNRLSGKIPISLKNC-----TALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGP--LPK 670 (840)
Q Consensus 600 --~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~--~p~ 670 (840)
..+++|++|++++|++++. |..+..+ ++|++|++++|++.+..|..+. .+++|++|++++|++.+. .|.
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHH
Confidence 6666777777777776655 6655555 6677777777777655555555 566777777777766543 222
Q ss_pred cc--cCccccceeecccccccc--cCC-ccccccccCcccccccCcccccccCCcceEEeCCCCcccccCc-ccccCCCC
Q 003200 671 TI--CDLAFLQILDLADNNLSG--AIP-KCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEIL-SEVTNLKA 744 (840)
Q Consensus 671 ~l--~~l~~L~~L~Ls~N~l~~--~~p-~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~-~~l~~l~~ 744 (840)
.+ ..+++|++|++++|++++ .++ ..+.++++| +.|++++|++++.+| ..+..+++
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L-------------------~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL-------------------QGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCC-------------------SEEECTTSCCCSSCCCSCCCCCTT
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCC-------------------CEEECCCCcCCcccchhhhhhcCC
Confidence 33 677888888888888772 111 122333444 888888888887765 45667889
Q ss_pred CCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccc
Q 003200 745 LQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTG 805 (840)
Q Consensus 745 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 805 (840)
|++|++++|+++ .+|..+. ++|++||+++|++++. |. +..+++|++|++++|++++
T Consensus 255 L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 255 LNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 999999999998 7887776 8899999999999865 66 8889999999999999876
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.1e-26 Score=245.45 Aligned_cols=245 Identities=21% Similarity=0.144 Sum_probs=129.1
Q ss_pred CCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCccc
Q 003200 527 SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLV 606 (840)
Q Consensus 527 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 606 (840)
++|++|++++|.+++..+.. +..+++|++|++++|.+++..+ +..+++|++|++++|++++.. ..++|+
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~ 102 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIE 102 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHH----HTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred CCCCEEECcCCccCcCCHHH----hhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcC
Confidence 45556666666555543332 2335556666666665554433 555555666666665555321 225555
Q ss_pred EEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCcccc-Cccccceeeccc
Q 003200 607 WLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTIC-DLAFLQILDLAD 685 (840)
Q Consensus 607 ~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~Ls~ 685 (840)
+|++++|++++..+.. +++|++|++++|++++..+..+. .+++|++|++++|.+++..+..+. .+++|++|++++
T Consensus 103 ~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 103 TLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp EEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred EEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 6666665555433322 34555666666655544444443 455556666666655555444442 455556666666
Q ss_pred ccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhc
Q 003200 686 NNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGT 765 (840)
Q Consensus 686 N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 765 (840)
|.+++. |.. ..+ ++|+.|++++|++++ +|..+..+++|+.|++++|+++ .+|..+..
T Consensus 179 N~l~~~-~~~-~~l-------------------~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 179 NFIYDV-KGQ-VVF-------------------AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp SCCCEE-ECC-CCC-------------------TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred CcCccc-ccc-ccc-------------------ccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhc
Confidence 555522 211 112 223566666666653 2333555666666666666665 34555556
Q ss_pred cCCCCeEeCCCCccc-ccCCccccCCCCCCeEecc-CCcccccCCC
Q 003200 766 MRALESVDFSVNQLS-GEIPQSMSSLTFLNHLNLS-NNNLTGKIPL 809 (840)
Q Consensus 766 l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls-~N~l~g~ip~ 809 (840)
+++|+.|++++|++. +.+|..+..++.|+.++++ .+.+.|..|.
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 666666666666665 4555555566666666655 3345555544
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.2e-24 Score=247.80 Aligned_cols=261 Identities=23% Similarity=0.260 Sum_probs=122.0
Q ss_pred CCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCc
Q 003200 459 HLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNS 538 (840)
Q Consensus 459 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~ 538 (840)
+++.|++++|.++.++.. + .++|++|++++|.++.... ..++|++|++++|++++ +|..+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~-l---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDC-L---PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSC-C---CTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC-CCCCCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcCccChh-h---CCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc-CCCCCCCCCEEECcCCc
Confidence 466677777766644332 1 1456666666666653222 23455555555555443 22244445555555444
Q ss_pred CcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCC
Q 003200 539 FSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGK 618 (840)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 618 (840)
+++. |. .+++|+.|++++|++++ +|.. +++|++|++++|++++
T Consensus 113 l~~l-----------------------------~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~- 155 (622)
T 3g06_A 113 LTHL-----------------------------PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS- 155 (622)
T ss_dssp CCCC-----------------------------CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-
T ss_pred CCCC-----------------------------CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-
Confidence 4432 22 23444445555554443 2221 2444555555554442
Q ss_pred CCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccc
Q 003200 619 IPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISN 698 (840)
Q Consensus 619 ~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 698 (840)
+|. .+++|+.|++++|.++ .+|. .+++|+.|++++|.+++ +|.. +++|+.|++++|.++ .+|..+
T Consensus 156 l~~---~~~~L~~L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~~-- 220 (622)
T 3g06_A 156 LPA---LPSELCKLWAYNNQLT-SLPM----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP-- 220 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCCC--
T ss_pred cCC---ccCCCCEEECCCCCCC-CCcc----cCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCCC--
Confidence 222 1234445555555544 2331 23445555555555443 2221 244555555555554 233211
Q ss_pred cccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCc
Q 003200 699 LTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQ 778 (840)
Q Consensus 699 l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 778 (840)
++|+.|++++|++++ +| ..+++|+.|++++|+++ .+|. .+++|++|+|++|+
T Consensus 221 --------------------~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 221 --------------------SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp --------------------TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC
T ss_pred --------------------CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCC
Confidence 122455555555553 33 23345555555555555 3443 34455555555555
Q ss_pred ccccCCccccCCCCCCeEeccCCcccccCC
Q 003200 779 LSGEIPQSMSSLTFLNHLNLSNNNLTGKIP 808 (840)
Q Consensus 779 l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 808 (840)
++ .+|..+..+++|+.|++++|+++|.+|
T Consensus 273 L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 273 LT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 55 445555555555555555555555444
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=9.8e-25 Score=248.54 Aligned_cols=268 Identities=24% Similarity=0.269 Sum_probs=171.8
Q ss_pred CccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcc
Q 003200 435 QLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVN 514 (840)
Q Consensus 435 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 514 (840)
+++.|++++|.++ .+|..+. ++|++|++++|+++.+.. .+++|++|++++|++++... ..++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC-----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 5899999999998 4455444 899999999999997655 47899999999999986444 56899999999
Q ss_pred cCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCC
Q 003200 515 SNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGN 594 (840)
Q Consensus 515 ~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 594 (840)
+|.+++... .+++|+.|++++|++++..+. +++|++|++++|.+++ +|. .+++|+.|++++|++++
T Consensus 110 ~N~l~~l~~-~l~~L~~L~L~~N~l~~lp~~--------l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 110 SNPLTHLPA-LPSGLCKLWIFGNQLTSLPVL--------PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp SCCCCCCCC-CCTTCCEEECCSSCCSCCCCC--------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred CCcCCCCCC-CCCCcCEEECCCCCCCcCCCC--------CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence 999987544 666777777777766642211 2455555555555553 222 12345555555555553
Q ss_pred CCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccC
Q 003200 595 LPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICD 674 (840)
Q Consensus 595 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~ 674 (840)
+| ..+++|+.|++++|++++ +|. ..++|+.|++++|.++. +|..
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~-------------------------l~~----~~~~L~~L~L~~N~l~~-l~~~--- 219 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLAS-------------------------LPT----LPSELYKLWAYNNRLTS-LPAL--- 219 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC-------------------------CCC----CCTTCCEEECCSSCCSS-CCCC---
T ss_pred Cc---ccCCCCcEEECCCCCCCC-------------------------CCC----ccchhhEEECcCCcccc-cCCC---
Confidence 22 223444455555554442 332 12445555555555542 2221
Q ss_pred ccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCc
Q 003200 675 LAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNT 754 (840)
Q Consensus 675 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~ 754 (840)
+++|+.|++++|++++ +|. .++ +|+.|++++|+|+ .+|. .+++|+.|+|++|+
T Consensus 220 ~~~L~~L~Ls~N~L~~-lp~---~l~-------------------~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 220 PSGLKELIVSGNRLTS-LPV---LPS-------------------ELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp CTTCCEEECCSSCCSC-CCC---CCT-------------------TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC
T ss_pred CCCCCEEEccCCccCc-CCC---CCC-------------------cCcEEECCCCCCC-cCCc---ccccCcEEeCCCCC
Confidence 3556666777776663 441 122 2366777777776 3444 45677777777777
Q ss_pred ccccCCcchhccCCCCeEeCCCCcccccCCccccCCC
Q 003200 755 FTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLT 791 (840)
Q Consensus 755 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 791 (840)
++ .+|..+.++++|+.|+|++|++++.+|..+..++
T Consensus 273 L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 273 LT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 77 6677777777777777777777777777665544
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=3.2e-27 Score=249.06 Aligned_cols=246 Identities=20% Similarity=0.264 Sum_probs=205.1
Q ss_pred CCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCC-CCCCcccC-------CCCcccEEEccCCcCcCCCCccc-
Q 003200 553 ETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFS-GNLPNSLG-------SITSLVWLYLRKNRLSGKIPISL- 623 (840)
Q Consensus 553 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~-------~l~~L~~L~L~~n~l~~~~p~~l- 623 (840)
..++|+.|++++|.+ .+|..+... |++|++++|+++ ..+|..+. .+++|++|++++|++++.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 357899999999999 677766554 999999999994 45565554 68999999999999999999887
Q ss_pred -ccCCCCcEEeCCCCcccccCChhhhhcc-----CCccEEEccCCcccccCCccccCccccceeecccccccccC--Ccc
Q 003200 624 -KNCTALASLDVDENEFVGNIPTWFGERF-----SRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAI--PKC 695 (840)
Q Consensus 624 -~~l~~L~~L~ls~N~l~~~~p~~~~~~l-----~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--p~~ 695 (840)
..+++|++|++++|++++. |..+. .+ ++|++|++++|++.+..|..+..+++|++|++++|++.+.+ |..
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 8999999999999999977 87776 45 89999999999999999999999999999999999987653 333
Q ss_pred c--cccccCcccccccCcccccccCCcceEEeCCCCcccc--cCc-ccccCCCCCCeEeCCCCcccccCC-cchhccCCC
Q 003200 696 I--SNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSG--EIL-SEVTNLKALQSINFSFNTFTGRIP-ESIGTMRAL 769 (840)
Q Consensus 696 ~--~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~--~~~-~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L 769 (840)
+ ..+++| +.|++++|++++ .++ ..+.++++|++|++++|++++.+| ..+..+++|
T Consensus 195 ~~~~~l~~L-------------------~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 255 (312)
T 1wwl_A 195 LCPLKFPTL-------------------QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255 (312)
T ss_dssp SCTTSCTTC-------------------CEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred HHhccCCCC-------------------CEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence 3 555555 999999999983 233 334688999999999999998775 567778999
Q ss_pred CeEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCCCCcCCCcCcCCCCCCCCC
Q 003200 770 ESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFNASSFAGNDLC 827 (840)
Q Consensus 770 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~lc 827 (840)
++|++++|+++ .+|..+. ++|++|++++|++++. |....+..+....+.+|.+.
T Consensus 256 ~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 256 NSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred CEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence 99999999999 8888877 8999999999999987 76656666665666666443
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=5.6e-26 Score=254.08 Aligned_cols=222 Identities=18% Similarity=0.161 Sum_probs=169.5
Q ss_pred CCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEE
Q 003200 553 ETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASL 632 (840)
Q Consensus 553 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 632 (840)
.+++|+.|++++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++.. ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 34578888888888887777788888888888888888876554 777888888888888887432 23788888
Q ss_pred eCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCcccc-ccccCcccccccCc
Q 003200 633 DVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCIS-NLTGMVTVKSFTGS 711 (840)
Q Consensus 633 ~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~l~~~~~~ 711 (840)
++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|..+. .+++|
T Consensus 105 ~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L--------- 171 (487)
T 3oja_A 105 HAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL--------- 171 (487)
T ss_dssp ECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC---------
T ss_pred ECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc---------
Confidence 8888888765543 357788888888888888788888888888888888888877776664 45555
Q ss_pred ccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCC
Q 003200 712 VVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLT 791 (840)
Q Consensus 712 ~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 791 (840)
+.|+|++|.+++. | ....+++|+.|+|++|++++. |..++.+++|+.||+++|++++ +|..+..++
T Consensus 172 ----------~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~ 237 (487)
T 3oja_A 172 ----------EHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQ 237 (487)
T ss_dssp ----------CEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCT
T ss_pred ----------cEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCC
Confidence 8888888888765 2 344578888888888888854 4447888888888888888884 777788888
Q ss_pred CCCeEeccCCccc-ccCC
Q 003200 792 FLNHLNLSNNNLT-GKIP 808 (840)
Q Consensus 792 ~L~~L~ls~N~l~-g~ip 808 (840)
+|+.|++++|++. +.+|
T Consensus 238 ~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 238 NLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp TCCEEECTTCCBCHHHHH
T ss_pred CCCEEEcCCCCCcCcchH
Confidence 8888888888887 5444
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.1e-26 Score=245.49 Aligned_cols=241 Identities=17% Similarity=0.158 Sum_probs=189.0
Q ss_pred EEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEc
Q 003200 531 YLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYL 610 (840)
Q Consensus 531 ~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 610 (840)
..+++.+.+..... ..+..+++|++|++++|.+++..|..|..+++|++|++++|++++..+ +..+++|++|++
T Consensus 14 i~~ls~~~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 14 IEKVTDSSLKQALA----SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EESCCTTTHHHHHH----HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred EeeccccchhhhHH----HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 34455555433222 223346789999999999988777888899999999999999886554 888899999999
Q ss_pred cCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccc
Q 003200 611 RKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSG 690 (840)
Q Consensus 611 ~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 690 (840)
++|++++.. ..++|++|++++|++++..+. .+++|++|++++|++++..|..+..+++|+.|++++|++++
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence 999887432 348899999999998865544 36789999999999998888888888999999999999987
Q ss_pred cCCcccc-ccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCC
Q 003200 691 AIPKCIS-NLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRAL 769 (840)
Q Consensus 691 ~~p~~~~-~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 769 (840)
..|..+. .+++| +.|++++|++++. + ....+++|++|++++|++++ +|..+..+++|
T Consensus 159 ~~~~~~~~~l~~L-------------------~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L 216 (317)
T 3o53_A 159 VNFAELAASSDTL-------------------EHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGV 216 (317)
T ss_dssp EEGGGGGGGTTTC-------------------CEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTC
T ss_pred ccHHHHhhccCcC-------------------CEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcc
Confidence 6666553 45555 8899999998854 3 33458899999999999985 55558889999
Q ss_pred CeEeCCCCcccccCCccccCCCCCCeEeccCCccc-ccCCC
Q 003200 770 ESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLT-GKIPL 809 (840)
Q Consensus 770 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~-g~ip~ 809 (840)
++|++++|+++ .+|..+..+++|++|++++|+++ +.+|.
T Consensus 217 ~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred cEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence 99999999998 57888888999999999999988 55553
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1e-24 Score=225.82 Aligned_cols=226 Identities=22% Similarity=0.202 Sum_probs=164.7
Q ss_pred eccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCccc
Q 003200 561 KLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFV 640 (840)
Q Consensus 561 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 640 (840)
+..+..++ .+|..+. ++|++|++++|++++..+..|..+++|++|++++|++++..+..+.++++|++|++++|+++
T Consensus 13 ~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 13 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp ECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 33344443 3444332 45777777777777665556667777777777777776655666777777777777777777
Q ss_pred ccCChhhhhccCCccEEEccCCcccccCCccccCccccceeeccccccccc-CCccccccccCcccccccCcccccccCC
Q 003200 641 GNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGA-IPKCISNLTGMVTVKSFTGSVVYREILP 719 (840)
Q Consensus 641 ~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~l~~~~~~~~~~~~~~ 719 (840)
+..+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|++++. +|..+.++++|
T Consensus 90 ~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L----------------- 151 (276)
T 2z62_A 90 SLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL----------------- 151 (276)
T ss_dssp EECTTTTT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-----------------
T ss_pred ccChhhhc-CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC-----------------
Confidence 55555555 577777777777777776666777888888888888888753 57777776666
Q ss_pred cceEEeCCCCcccccCcccccCCCCCC----eEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCe
Q 003200 720 LVSLLDISRNNFSGEILSEVTNLKALQ----SINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNH 795 (840)
Q Consensus 720 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 795 (840)
+.|++++|++++..+..+..+++|+ .|++++|++++..+..+. ..+|++|++++|++++..+..+..+++|++
T Consensus 152 --~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 228 (276)
T 2z62_A 152 --EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQK 228 (276)
T ss_dssp --CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCE
T ss_pred --CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccE
Confidence 8888888888877777777777666 889999999966555554 458999999999999766666788999999
Q ss_pred EeccCCcccccCCCC
Q 003200 796 LNLSNNNLTGKIPLS 810 (840)
Q Consensus 796 L~ls~N~l~g~ip~~ 810 (840)
|++++|++++..|.-
T Consensus 229 L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 229 IWLHTNPWDCSCPRI 243 (276)
T ss_dssp EECCSSCBCCCTTTT
T ss_pred EEccCCcccccCCch
Confidence 999999999887754
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=8.5e-27 Score=270.25 Aligned_cols=236 Identities=14% Similarity=0.061 Sum_probs=160.4
Q ss_pred CCCcccEEeccCCcCccccC-ccccCCCCcCEEEccCCcCCCC-CCcccCCCCcccEEEccC---------CcCcCCCCc
Q 003200 553 ETKSLEGLKLTDNYLQGEIP-DCWMSYQNLKVLKLSNNKFSGN-LPNSLGSITSLVWLYLRK---------NRLSGKIPI 621 (840)
Q Consensus 553 ~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~---------n~l~~~~p~ 621 (840)
.+++|++|++++|.+++... ..+..+++|++|++++| +++. ++.....+++|++|++.+ +.+++....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 46889999999998765432 23567899999999988 4422 122223578899998843 445433333
Q ss_pred cc-ccCCCCcEEeCCCCcccccCChhhhhccCCccEEEcc--C----CcccccC-----CccccCccccceeeccccccc
Q 003200 622 SL-KNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILR--S----NQFHGPL-----PKTICDLAFLQILDLADNNLS 689 (840)
Q Consensus 622 ~l-~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~--~----n~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~ 689 (840)
.+ ..+++|+.|+++.|.+++..+..+...+++|+.|+++ + +.++... +..+..+++|+.|++++ .++
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 33 3488999998888888877777776668899999998 3 4555221 12256678899999977 565
Q ss_pred ccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccc-cCCCCCCeEeCCCCcccccCCc-chhccC
Q 003200 690 GAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEV-TNLKALQSINFSFNTFTGRIPE-SIGTMR 767 (840)
Q Consensus 690 ~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~ 767 (840)
+..+..+.. .+++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++..+. .+..++
T Consensus 445 ~~~~~~l~~------------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 445 DKVFEYIGT------------------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHHHHHHH------------------HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HHHHHHHHH------------------hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 444444433 12344899999999887666665 6789999999999998755444 445688
Q ss_pred CCCeEeCCCCcccccCCccc-cCCCCCCeEeccCCcccccCC
Q 003200 768 ALESVDFSVNQLSGEIPQSM-SSLTFLNHLNLSNNNLTGKIP 808 (840)
Q Consensus 768 ~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls~N~l~g~ip 808 (840)
+|++|++++|+++....+.+ ..++.|+...+..+.-....|
T Consensus 507 ~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~~~~ 548 (594)
T 2p1m_B 507 TMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRP 548 (594)
T ss_dssp GSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGGGSC
T ss_pred CCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcccccc
Confidence 99999999998865444444 456777776666665444333
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.5e-25 Score=250.52 Aligned_cols=236 Identities=20% Similarity=0.128 Sum_probs=193.7
Q ss_pred CCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcc
Q 003200 526 SSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSL 605 (840)
Q Consensus 526 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 605 (840)
+++|++|++++|.+.+..|.. +..+++|++|++++|.+++..| +..+++|++|++++|.+++..+ .++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L 101 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSI 101 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGG----GTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTC
T ss_pred CCCccEEEeeCCcCCCCCHHH----HhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCc
Confidence 356777778888777765543 3457899999999999987665 8889999999999999885432 3789
Q ss_pred cEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCcccc-Cccccceeecc
Q 003200 606 VWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTIC-DLAFLQILDLA 684 (840)
Q Consensus 606 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~Ls 684 (840)
++|++++|.+++..+. .+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++..|..+. .+++|+.|+++
T Consensus 102 ~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp CEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence 9999999999866554 357899999999999987787776 689999999999999988888876 78999999999
Q ss_pred cccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchh
Q 003200 685 DNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIG 764 (840)
Q Consensus 685 ~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 764 (840)
+|.+++..+ ...++ +|+.|+|++|.+++.. ..+..+++|+.|+|++|.+++ +|..++
T Consensus 178 ~N~l~~~~~--~~~l~-------------------~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~ 234 (487)
T 3oja_A 178 YNFIYDVKG--QVVFA-------------------KLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALR 234 (487)
T ss_dssp TSCCCEEEC--CCCCT-------------------TCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCC
T ss_pred CCccccccc--cccCC-------------------CCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcc-cchhhc
Confidence 999985522 22344 4499999999999654 458999999999999999995 788899
Q ss_pred ccCCCCeEeCCCCccc-ccCCccccCCCCCCeEecc
Q 003200 765 TMRALESVDFSVNQLS-GEIPQSMSSLTFLNHLNLS 799 (840)
Q Consensus 765 ~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls 799 (840)
.+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 235 ~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 9999999999999998 7788888889989888886
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=7.3e-24 Score=218.38 Aligned_cols=213 Identities=23% Similarity=0.280 Sum_probs=134.4
Q ss_pred CCCccccceecCCCCCCEEEEEcCCCCCCCCCccccccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEecc
Q 003200 60 GDCCTWAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLS 139 (840)
Q Consensus 60 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls 139 (840)
.++|.|.|+.|.- .+.++.+++++. .+. .+|..+. +++++|+|++|.++++ .+..+..+++|++|+++
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~-------~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~ 69 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSK-------KLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLN 69 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTS-------CCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCC-------CCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECC
Confidence 5789999999953 334566777774 332 3555443 5678888888887754 34467777888888888
Q ss_pred CCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCc
Q 003200 140 DTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHH 219 (840)
Q Consensus 140 ~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 219 (840)
+|.+++..+..|.++++|++|++++|.+.......|.++++|++|++++|+++..+. ..+..+++|++|++++|.+++
T Consensus 70 ~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~ 147 (270)
T 2o6q_A 70 DNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP--RVFDSLTKLTYLSLGYNELQS 147 (270)
T ss_dssp SSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCC
T ss_pred CCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH--HHhCcCcCCCEEECCCCcCCc
Confidence 888776555566777888888888887777666677777777777777777666532 234455566666666665555
Q ss_pred CCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccCccccccchhhhcCCCCcEEeccc
Q 003200 220 FPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSI 292 (840)
Q Consensus 220 ~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 292 (840)
.++ ..+..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 148 ~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 148 LPK------GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp CCT------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred cCH------hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence 443 3455555556666655555554444555555555555555555544444444455555555554
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=3e-26 Score=265.70 Aligned_cols=95 Identities=18% Similarity=0.257 Sum_probs=47.8
Q ss_pred cccCCCCCCEEECcCCCCCC---CCcc------------cccCCCCCcEEEcccCccccccchhhh-cCCCCcEEecccc
Q 003200 230 GLQNLTSLKHLDLDSNHFNS---SIPD------------WLYKFSPLECLNLRNNSLQGTISDAIG-NLTSVSWLDLSIN 293 (840)
Q Consensus 230 ~l~~l~~L~~L~Ls~n~l~~---~~p~------------~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n 293 (840)
.+..+++|++|+++++.... ..|. ....+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 35566777777777764211 1111 122455666666666666555444443 4566666666653
Q ss_pred cCcccc-CcccccCCCCCcEEEcCCCcccccc
Q 003200 294 IGLQGR-IPRSMANFCNLKSVNLRGVHLSQEI 324 (840)
Q Consensus 294 ~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~ 324 (840)
..+... ++.....+++|++|++++|.+++..
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~ 172 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVS 172 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCC
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcc
Confidence 232221 2233334555555555555544433
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=8.7e-24 Score=218.85 Aligned_cols=212 Identities=20% Similarity=0.186 Sum_probs=159.3
Q ss_pred CcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeC
Q 003200 555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDV 634 (840)
Q Consensus 555 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 634 (840)
+++++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++++|++++..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35777777777777666666777777777777777777666667777777777777777777666677777777777777
Q ss_pred CCCcccccCChhhhhccCCccEEEccCCccccc-CCccccCccccceeecccccccccCCccccccccCcccccccCccc
Q 003200 635 DENEFVGNIPTWFGERFSRMLVLILRSNQFHGP-LPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVV 713 (840)
Q Consensus 635 s~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 713 (840)
++|.+.+..+..+. .+++|++|++++|.+++. +|..+..+++|+.|++++|++++..+..+..++++.
T Consensus 108 ~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~---------- 176 (276)
T 2z62_A 108 VETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP---------- 176 (276)
T ss_dssp TTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT----------
T ss_pred CCCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc----------
Confidence 77777755444454 677888888888887764 577888888888888888888876666777666652
Q ss_pred ccccCCcce-EEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCC
Q 003200 714 YREILPLVS-LLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIP 784 (840)
Q Consensus 714 ~~~~~~~L~-~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 784 (840)
.+. .|++++|++++..+..+. ..+|+.|++++|++++..+..|..+++|++|++++|++.+..|
T Consensus 177 ------~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 177 ------LLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp ------TCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ------ccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 112 789999999865554444 4589999999999997777778899999999999999986543
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3.6e-23 Score=213.19 Aligned_cols=202 Identities=21% Similarity=0.249 Sum_probs=107.7
Q ss_pred cccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCC
Q 003200 556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVD 635 (840)
Q Consensus 556 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls 635 (840)
..+.++++++.++ .+|..+. +++++|++++|++++..+..|..+++|++|++++|+++...+..|.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4566777777776 3454432 467777777777776555566667777777777777665444455666666666666
Q ss_pred CCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccccc
Q 003200 636 ENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYR 715 (840)
Q Consensus 636 ~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~ 715 (840)
+|++++..+..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|
T Consensus 94 ~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------- 159 (270)
T 2o6q_A 94 DNKLQALPIGVFD-QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL------------- 159 (270)
T ss_dssp SSCCCCCCTTTTT-TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred CCcCCcCCHhHcc-cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc-------------
Confidence 6666533322222 45555555555555555544445555555555555555543333333333333
Q ss_pred ccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCccc
Q 003200 716 EILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLS 780 (840)
Q Consensus 716 ~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 780 (840)
+.|++++|++++..+..+.++++|++|++++|++++..+..|..+++|+.|++++|++.
T Consensus 160 ------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 160 ------KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp ------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ------ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 44444444444433333444444444444444444333333444444444444444443
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.8e-24 Score=221.59 Aligned_cols=222 Identities=18% Similarity=0.180 Sum_probs=172.5
Q ss_pred cccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCC
Q 003200 556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVD 635 (840)
Q Consensus 556 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls 635 (840)
.+..+++.++.+.... ....+++|++|++++|.++.. ..+..+++|++|++++|++++. ..+..+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCccccccc--ccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 4445556666555442 345567778888888777632 2467777888888888887752 367778888888888
Q ss_pred CCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccccc
Q 003200 636 ENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYR 715 (840)
Q Consensus 636 ~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~ 715 (840)
+|.+++..+..+. .+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus 94 ~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------------- 159 (272)
T 3rfs_A 94 GNQLQSLPNGVFD-KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL------------- 159 (272)
T ss_dssp TSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred CCccCccChhHhc-CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC-------------
Confidence 8888755555454 67888888888888887777778888889999999998886666667777666
Q ss_pred ccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCe
Q 003200 716 EILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNH 795 (840)
Q Consensus 716 ~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 795 (840)
+.|++++|++++..+..++.+++|++|++++|++++..|..++.+++|++|++++|++.+.. +.|+.
T Consensus 160 ------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~ 226 (272)
T 3rfs_A 160 ------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRY 226 (272)
T ss_dssp ------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TTTHH
T ss_pred ------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------cHHHH
Confidence 88999999998777777888999999999999999888888899999999999999988654 46888
Q ss_pred EeccCCcccccCCCC
Q 003200 796 LNLSNNNLTGKIPLS 810 (840)
Q Consensus 796 L~ls~N~l~g~ip~~ 810 (840)
|+++.|.++|.+|..
T Consensus 227 l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 227 LSEWINKHSGVVRNS 241 (272)
T ss_dssp HHHHHHHTGGGBBCT
T ss_pred HHHHHHhCCCcccCc
Confidence 999999999999975
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=2.1e-25 Score=243.12 Aligned_cols=242 Identities=15% Similarity=0.231 Sum_probs=175.2
Q ss_pred hhccCCCCcccEEeccCCcCccccC----ccccCCCCcCEEEccCCc---CCCCCCccc-------CCCCcccEEEccCC
Q 003200 548 CYRVNETKSLEGLKLTDNYLQGEIP----DCWMSYQNLKVLKLSNNK---FSGNLPNSL-------GSITSLVWLYLRKN 613 (840)
Q Consensus 548 ~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~---l~~~~~~~l-------~~l~~L~~L~L~~n 613 (840)
...+..+++|++|++++|.+++..+ ..+..+++|++|++++|. +++.+|..+ ..+++|++|+|++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 3344556778888888887776433 346677788888888753 344445444 57788888888888
Q ss_pred cCcC----CCCcccccCCCCcEEeCCCCcccccCChhhhhc---c---------CCccEEEccCCccc-ccCC---cccc
Q 003200 614 RLSG----KIPISLKNCTALASLDVDENEFVGNIPTWFGER---F---------SRMLVLILRSNQFH-GPLP---KTIC 673 (840)
Q Consensus 614 ~l~~----~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~---l---------~~L~~L~l~~n~l~-~~~p---~~l~ 673 (840)
++++ .+|..+..+++|++|++++|.+.+..+..+... + ++|++|++++|+++ +.+| ..+.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 8876 366677888888888888888865544444422 2 78888888888886 3344 4566
Q ss_pred Cccccceeecccccccc-----cCCccccccccCcccccccCcccccccCCcceEEeCCCCccc----ccCcccccCCCC
Q 003200 674 DLAFLQILDLADNNLSG-----AIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFS----GEILSEVTNLKA 744 (840)
Q Consensus 674 ~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~----~~~~~~l~~l~~ 744 (840)
.+++|++|++++|+++. ..|..+..+++| +.|+|++|.++ +.+|..+..+++
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L-------------------~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL-------------------KVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC-------------------CEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc-------------------cEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 77888888888888872 233355555555 88888888886 567778888888
Q ss_pred CCeEeCCCCccccc----CCcchhc--cCCCCeEeCCCCcccc----cCCccc-cCCCCCCeEeccCCcccccCC
Q 003200 745 LQSINFSFNTFTGR----IPESIGT--MRALESVDFSVNQLSG----EIPQSM-SSLTFLNHLNLSNNNLTGKIP 808 (840)
Q Consensus 745 L~~L~Ls~N~l~~~----~p~~l~~--l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~ls~N~l~g~ip 808 (840)
|+.|+|++|++++. +|..+.. +++|++|+|++|++++ .+|..+ .++++|++|++++|++++..|
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 88888888888866 5666643 8888889998888887 477777 567888889998888887664
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=7.6e-23 Score=212.42 Aligned_cols=201 Identities=19% Similarity=0.176 Sum_probs=108.2
Q ss_pred CCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEE
Q 003200 553 ETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASL 632 (840)
Q Consensus 553 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 632 (840)
.++++++++++++.++ .+|..+. +++++|++++|++++..+..|..+++|++|++++|.+++..+. ..+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence 4556666666666666 3343332 4566666666666655555666666666666666666533221 455566666
Q ss_pred eCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcc
Q 003200 633 DVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSV 712 (840)
Q Consensus 633 ~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~ 712 (840)
++++|+++ .+|..+. .+++|++|++++|++++..|..|..+++|+.|++++|++++..+..+..+++|
T Consensus 83 ~Ls~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---------- 150 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL---------- 150 (290)
T ss_dssp ECCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC----------
T ss_pred ECCCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC----------
Confidence 66666655 4444443 45555555555555555555555555555555555555553333334444433
Q ss_pred cccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCccc
Q 003200 713 VYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLS 780 (840)
Q Consensus 713 ~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 780 (840)
+.|+|++|++++..+..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++.
T Consensus 151 ---------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 151 ---------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ---------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ---------CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 55555555555333333444555555555555555 44444445555555555555544
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.7e-23 Score=215.68 Aligned_cols=209 Identities=22% Similarity=0.219 Sum_probs=177.7
Q ss_pred CCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEE
Q 003200 553 ETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASL 632 (840)
Q Consensus 553 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 632 (840)
.+++|+.|++++|.++.. ..+..+++|++|++++|++++. ..+..+++|++|++++|++++..+..+.++++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 357888999999888743 3578889999999999998863 468888999999999999987777778899999999
Q ss_pred eCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcc
Q 003200 633 DVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSV 712 (840)
Q Consensus 633 ~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~ 712 (840)
++++|++++..+..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|
T Consensus 115 ~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L---------- 183 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL---------- 183 (272)
T ss_dssp ECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC----------
T ss_pred ECCCCcCCccCHHHhc-cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC----------
Confidence 9999999866555555 78999999999999998888888899999999999999997777677777776
Q ss_pred cccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCC
Q 003200 713 VYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTF 792 (840)
Q Consensus 713 ~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 792 (840)
+.|++++|++++..+..+..+++|+.|++++|.+.+. +++|+.|+++.|+++|.+|..++.+..
T Consensus 184 ---------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 184 ---------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp ---------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ---------CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 8999999999988888889999999999999998854 457899999999999999999887764
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=1.5e-24 Score=233.81 Aligned_cols=236 Identities=18% Similarity=0.204 Sum_probs=105.7
Q ss_pred cccEEeccCCcCccccC----ccccCCC-CcCEEEccCCcCCCCCCcccCCC-----CcccEEEccCCcCcCCCCccc--
Q 003200 556 SLEGLKLTDNYLQGEIP----DCWMSYQ-NLKVLKLSNNKFSGNLPNSLGSI-----TSLVWLYLRKNRLSGKIPISL-- 623 (840)
Q Consensus 556 ~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~p~~l-- 623 (840)
+|++|++++|.+++..+ ..+..++ +|++|++++|++++..+..+..+ ++|++|++++|++++..+..+
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 35555555555544333 3444444 45555555555554444433332 455555555555544433322
Q ss_pred --ccC-CCCcEEeCCCCcccccCChhhhhc----cCCccEEEccCCcccccCC----ccccCcc-ccceeeccccccccc
Q 003200 624 --KNC-TALASLDVDENEFVGNIPTWFGER----FSRMLVLILRSNQFHGPLP----KTICDLA-FLQILDLADNNLSGA 691 (840)
Q Consensus 624 --~~l-~~L~~L~ls~N~l~~~~p~~~~~~----l~~L~~L~l~~n~l~~~~p----~~l~~l~-~L~~L~Ls~N~l~~~ 691 (840)
..+ ++|++|++++|++++..+..+... .++|++|++++|.+++..+ ..+..++ +|++|++++|++++.
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence 222 455555555555544433333211 1355555555555543222 2222332 555555555555544
Q ss_pred CCccccccccCcccccccCcccccccC-CcceEEeCCCCccccc----CcccccC-CCCCCeEeCCCCcccccCC----c
Q 003200 692 IPKCISNLTGMVTVKSFTGSVVYREIL-PLVSLLDISRNNFSGE----ILSEVTN-LKALQSINFSFNTFTGRIP----E 761 (840)
Q Consensus 692 ~p~~~~~l~~L~~l~~~~~~~~~~~~~-~~L~~L~Ls~N~l~~~----~~~~l~~-l~~L~~L~Ls~N~l~~~~p----~ 761 (840)
.+..+...- ... ++|+.|||++|.+++. ++..+.. .++|++|+|++|++++..+ .
T Consensus 183 ~~~~l~~~l---------------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 247 (362)
T 3goz_A 183 NCAELAKFL---------------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247 (362)
T ss_dssp CHHHHHHHH---------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred hHHHHHHHH---------------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence 333222110 001 1235555555555532 2333333 2355555555555554333 2
Q ss_pred chhccCCCCeEeCCCCccccc-------CCccccCCCCCCeEeccCCccccc
Q 003200 762 SIGTMRALESVDFSVNQLSGE-------IPQSMSSLTFLNHLNLSNNNLTGK 806 (840)
Q Consensus 762 ~l~~l~~L~~L~Ls~N~l~~~-------~p~~l~~l~~L~~L~ls~N~l~g~ 806 (840)
.+..+++|++|++++|++.+. +++.+..+++|++||+++|++.+.
T Consensus 248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 223445555555555553221 222344555555555555555443
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.5e-22 Score=210.24 Aligned_cols=203 Identities=20% Similarity=0.182 Sum_probs=158.1
Q ss_pred ccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCc
Q 003200 575 WMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRM 654 (840)
Q Consensus 575 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L 654 (840)
+.++++++++++++|.++ .+|..+. +.++.|++++|++++..+..+.++++|++|++++|.+++..+. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD---GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC---SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC---CCCCcC
Confidence 566778888888888887 4555443 6788888888888877777888888888888888888754332 267888
Q ss_pred cEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCccccc
Q 003200 655 LVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGE 734 (840)
Q Consensus 655 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 734 (840)
++|++++|+++ .+|..+..+++|+.|++++|++++..|..+..+++| +.|++++|++++.
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-------------------~~L~L~~N~l~~~ 139 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-------------------QELYLKGNELKTL 139 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC-------------------CEEECTTSCCCCC
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC-------------------CEEECCCCCCCcc
Confidence 88888888887 566777788888888888888886666677777666 7888888888876
Q ss_pred CcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCccc
Q 003200 735 ILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLT 804 (840)
Q Consensus 735 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 804 (840)
.+..|..+++|+.|+|++|++++..+..|..+++|++|++++|+++ .+|..+..+.+|+.+++++|++.
T Consensus 140 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 6666778888888888888888655566778888888888888888 67777777888888888888775
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.8e-23 Score=220.24 Aligned_cols=205 Identities=21% Similarity=0.244 Sum_probs=129.5
Q ss_pred CcccEEeccCCcCccccCccc--cCCCCcCEEEccCCcCCCCCC----cccCCCCcccEEEccCCcCcCCCCcccccCCC
Q 003200 555 KSLEGLKLTDNYLQGEIPDCW--MSYQNLKVLKLSNNKFSGNLP----NSLGSITSLVWLYLRKNRLSGKIPISLKNCTA 628 (840)
Q Consensus 555 ~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 628 (840)
++|++|++++|.+++..|..+ ..+++|++|++++|++++..+ ..+..+++|++|++++|++.+..|..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 446666666666666655555 556666666666666665433 22234555666666666665555555555555
Q ss_pred CcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCcc----ccccccCcc
Q 003200 629 LASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKC----ISNLTGMVT 704 (840)
Q Consensus 629 L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~ 704 (840)
|++|++++|++.+.... ..+..+..+++|++|++++|+++ .+|.. +..+++|
T Consensus 171 L~~L~Ls~N~l~~~~~~---------------------~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L-- 226 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGL---------------------MAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQP-- 226 (310)
T ss_dssp CCEEECCSCTTCHHHHH---------------------HTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCC--
T ss_pred CCEEECCCCCCccchhh---------------------hHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCC--
Confidence 55555555554321000 01122345677777777777775 22221 2333444
Q ss_pred cccccCcccccccCCcceEEeCCCCcccccCcccccCC---CCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccc
Q 003200 705 VKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNL---KALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSG 781 (840)
Q Consensus 705 l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 781 (840)
++|||++|++++.+|..+..+ ++|++|+|++|+++ .+|..+. ++|++|||++|++++
T Consensus 227 -----------------~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 227 -----------------HSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp -----------------SSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS
T ss_pred -----------------CEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC
Confidence 778888888887777777666 58888888888888 6777664 788888888888885
Q ss_pred cCCccccCCCCCCeEeccCCcccc
Q 003200 782 EIPQSMSSLTFLNHLNLSNNNLTG 805 (840)
Q Consensus 782 ~~p~~l~~l~~L~~L~ls~N~l~g 805 (840)
. |. +..+++|++|++++|+++.
T Consensus 287 ~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 287 A-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp C-CC-TTSCCCCSCEECSSTTTSC
T ss_pred C-ch-hhhCCCccEEECcCCCCCC
Confidence 3 43 5777888888888888864
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=4e-23 Score=217.53 Aligned_cols=197 Identities=20% Similarity=0.252 Sum_probs=146.1
Q ss_pred CcccEEEccCCcCcCCCCccc--ccCCCCcEEeCCCCcccccCC----hhhhhccCCccEEEccCCcccccCCccccCcc
Q 003200 603 TSLVWLYLRKNRLSGKIPISL--KNCTALASLDVDENEFVGNIP----TWFGERFSRMLVLILRSNQFHGPLPKTICDLA 676 (840)
Q Consensus 603 ~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~ls~N~l~~~~p----~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 676 (840)
++|++|++++|++++..|..+ ..+++|++|++++|++.+..+ ..+. .+++|++|++++|++.+..|..+..++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCCcchhhHHHhccCC
Confidence 345555555555555555555 555666666666666655444 2233 578888888888888888888899999
Q ss_pred ccceeeccccccccc--C--CccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcc----cccCCCCCCeE
Q 003200 677 FLQILDLADNNLSGA--I--PKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILS----EVTNLKALQSI 748 (840)
Q Consensus 677 ~L~~L~Ls~N~l~~~--~--p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~----~l~~l~~L~~L 748 (840)
+|++|++++|++.+. + +..+..+++| ++|++++|+++. ++. .++.+++|++|
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L-------------------~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L 229 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAI-------------------QNLALRNTGMET-PTGVCAALAAAGVQPHSL 229 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCC-------------------CSCBCCSSCCCC-HHHHHHHHHHHTCCCSSE
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCC-------------------CEEECCCCCCCc-hHHHHHHHHhcCCCCCEE
Confidence 999999999998753 2 2233555555 999999999973 333 25788999999
Q ss_pred eCCCCcccccCCcchhcc---CCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCCCCcCCCcCcCCCCCC
Q 003200 749 NFSFNTFTGRIPESIGTM---RALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFNASSFAGN 824 (840)
Q Consensus 749 ~Ls~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn 824 (840)
+|++|++++.+|..++.+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |....+..+....+.||
T Consensus 230 ~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 230 DLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGN 304 (310)
T ss_dssp ECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSST
T ss_pred ECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCC
Confidence 999999998889888887 69999999999999 7888875 7999999999999983 33344555555555555
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=2.4e-22 Score=204.60 Aligned_cols=179 Identities=18% Similarity=0.204 Sum_probs=100.4
Q ss_pred CcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEc
Q 003200 580 NLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLIL 659 (840)
Q Consensus 580 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l 659 (840)
..++++++++.++ .+|..+. +.++.|++++|++++..+..+.++++|++|++++|.+++..|..+. .+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD-DLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc-cCCcCCEEEC
Confidence 4677788888777 4555554 5677777777777776666777777777777777777654444443 4555666666
Q ss_pred cCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccc
Q 003200 660 RSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEV 739 (840)
Q Consensus 660 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l 739 (840)
++|++++..+..+..+++|++|++++|++++..+..+..+++| +.|+|++|++++..+..+
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-------------------~~L~Ls~N~l~~~~~~~~ 151 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL-------------------KELRLNTNQLQSIPAGAF 151 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------------CEEECCSSCCCCCCTTTT
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc-------------------cEEECcCCcCCccCHHHc
Confidence 6665555555555555555555555555553333333433333 445555554443333344
Q ss_pred cCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccc
Q 003200 740 TNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSG 781 (840)
Q Consensus 740 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 781 (840)
+.+++|++|+|++|++++..|..|..+++|++|++++|++.+
T Consensus 152 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 444444444444444444444444444444444444444443
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=4.5e-24 Score=230.04 Aligned_cols=242 Identities=21% Similarity=0.214 Sum_probs=175.5
Q ss_pred CCCcEEEccCCcCcccCCchhhhccCCCC-cccEEeccCCcCccccCccccCC-----CCcCEEEccCCcCCCCCCccc-
Q 003200 527 SNLVYLDFSNNSFSGSISHFLCYRVNETK-SLEGLKLTDNYLQGEIPDCWMSY-----QNLKVLKLSNNKFSGNLPNSL- 599 (840)
Q Consensus 527 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~l- 599 (840)
.+|++|++++|.+++..+..+...+..++ +|++|++++|.+++..+..+..+ ++|++|++++|++++..+..+
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 45777888888877776655556666677 88899999988887766666554 889999999998887666543
Q ss_pred ---CCC-CcccEEEccCCcCcCCCCcccc----c-CCCCcEEeCCCCcccccCChhhhh---cc-CCccEEEccCCcccc
Q 003200 600 ---GSI-TSLVWLYLRKNRLSGKIPISLK----N-CTALASLDVDENEFVGNIPTWFGE---RF-SRMLVLILRSNQFHG 666 (840)
Q Consensus 600 ---~~l-~~L~~L~L~~n~l~~~~p~~l~----~-l~~L~~L~ls~N~l~~~~p~~~~~---~l-~~L~~L~l~~n~l~~ 666 (840)
..+ ++|++|++++|++++..+..+. . .++|++|++++|.+.+..+..+.. .. ++|++|++++|++++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 334 7899999999998866655443 3 368999999999988654443321 33 389999999999987
Q ss_pred cCCcccc----Cc-cccceeeccccccccc----CCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcc
Q 003200 667 PLPKTIC----DL-AFLQILDLADNNLSGA----IPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILS 737 (840)
Q Consensus 667 ~~p~~l~----~l-~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~ 737 (840)
..+..+. .+ ++|+.||+++|.+++. ++..+... .++|+.|||++|++++..+.
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~------------------~~~L~~L~Ls~N~l~~~~~~ 243 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI------------------PNHVVSLNLCLNCLHGPSLE 243 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHS------------------CTTCCEEECCSSCCCCCCHH
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcC------------------CCCceEEECcCCCCCcHHHH
Confidence 7765444 34 5899999999998853 22233221 23458999999999876553
Q ss_pred ----cccCCCCCCeEeCCCCccccc-------CCcchhccCCCCeEeCCCCcccccCCcc
Q 003200 738 ----EVTNLKALQSINFSFNTFTGR-------IPESIGTMRALESVDFSVNQLSGEIPQS 786 (840)
Q Consensus 738 ----~l~~l~~L~~L~Ls~N~l~~~-------~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 786 (840)
.+..+++|++|++++|.+.+. ++..+..+++|+.||+++|++.+..|..
T Consensus 244 ~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence 346778999999999985433 3446778889999999999998764443
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=8.5e-24 Score=230.40 Aligned_cols=239 Identities=21% Similarity=0.306 Sum_probs=194.3
Q ss_pred CCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCC---cCccccCccc-------cCCCCcCEEEccCCcCCC--
Q 003200 526 SSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDN---YLQGEIPDCW-------MSYQNLKVLKLSNNKFSG-- 593 (840)
Q Consensus 526 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n---~l~~~~~~~~-------~~l~~L~~L~Ls~n~l~~-- 593 (840)
.++|++|++++|.+.+..+..++..+..+++|++|++++| ++++.+|..+ ..+++|++|++++|.+++
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 4678888888888887777777777788999999999996 4455556554 688999999999999997
Q ss_pred --CCCcccCCCCcccEEEccCCcCcCCCCccc----ccC---------CCCcEEeCCCCccc-ccCC---hhhhhccCCc
Q 003200 594 --NLPNSLGSITSLVWLYLRKNRLSGKIPISL----KNC---------TALASLDVDENEFV-GNIP---TWFGERFSRM 654 (840)
Q Consensus 594 --~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l----~~l---------~~L~~L~ls~N~l~-~~~p---~~~~~~l~~L 654 (840)
.++..+..+++|++|+|++|.++...+..+ ..+ ++|++|++++|++. +.+| ..+. .+++|
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L 189 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ-SHRLL 189 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH-HCTTC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH-hCCCc
Confidence 366678889999999999999975444433 344 89999999999997 3444 2343 68899
Q ss_pred cEEEccCCcccc-----cCCccccCccccceeeccccccc----ccCCccccccccCcccccccCcccccccCCcceEEe
Q 003200 655 LVLILRSNQFHG-----PLPKTICDLAFLQILDLADNNLS----GAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLD 725 (840)
Q Consensus 655 ~~L~l~~n~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~ 725 (840)
++|++++|+++. ..|..+..+++|+.|++++|.++ +.+|..+..+++| +.|+
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L-------------------~~L~ 250 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL-------------------RELG 250 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC-------------------CEEE
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc-------------------CEEE
Confidence 999999999973 34557889999999999999996 5677777776666 9999
Q ss_pred CCCCccccc----Cccccc--CCCCCCeEeCCCCcccc----cCCcch-hccCCCCeEeCCCCcccccCC
Q 003200 726 ISRNNFSGE----ILSEVT--NLKALQSINFSFNTFTG----RIPESI-GTMRALESVDFSVNQLSGEIP 784 (840)
Q Consensus 726 Ls~N~l~~~----~~~~l~--~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~Ls~N~l~~~~p 784 (840)
|++|.+++. ++..+. .+++|+.|+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 999999876 566663 49999999999999997 488888 678999999999999997764
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.4e-23 Score=224.31 Aligned_cols=240 Identities=19% Similarity=0.188 Sum_probs=165.2
Q ss_pred CCCCccccceecCCCCCCEEEEEcCCCCCCCCCccccccccccccCC--CCCCEEeCCCCCCCCCCccccccCCCCCcEE
Q 003200 59 DGDCCTWAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDL--KHLSYLDLSSNDFQGVQIPRFIGSMRNLRYL 136 (840)
Q Consensus 59 ~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l--~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L 136 (840)
...|.+|+++.|+ ...++.++++++ .+. +..+..+ +++++|++++|.+.+. .+. +..+++|++|
T Consensus 33 ~~vc~~W~~~~~~--~~~~~~l~l~~~-------~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~~-~~~~~~L~~L 98 (336)
T 2ast_B 33 SGVCKRWYRLASD--ESLWQTLDLTGK-------NLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LAE-HFSPFRVQHM 98 (336)
T ss_dssp TSSCHHHHHHHTC--STTSSEEECTTC-------BCC---HHHHHHHHHTTCSEEECTTCEECSC-CCS-CCCCBCCCEE
T ss_pred HHHHHHHHHHhcC--chhheeeccccc-------cCC---HHHHHhhhhccceEEEcCCcccccc-chh-hccCCCCCEE
Confidence 3567789999986 345778888875 333 3445666 7899999999988864 343 5678999999
Q ss_pred eccCCcccCC-CCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCc-CCCCCcchhhhcCCCCCCCEEEcCC
Q 003200 137 NLSDTQFVGM-IPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSV-NLSKASDWLMATNTLPSLLELRLSN 214 (840)
Q Consensus 137 ~Ls~n~i~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~l~~L~~L~L~~ 214 (840)
++++|.+++. +|..+.++++|++|++++|.+....+..+.++++|++|++++| .+++ ...+..+..+++|++|++++
T Consensus 99 ~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~-~~l~~~~~~~~~L~~L~l~~ 177 (336)
T 2ast_B 99 DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE-FALQTLLSSCSRLDELNLSW 177 (336)
T ss_dssp ECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH-HHHHHHHHHCTTCCEEECCC
T ss_pred EccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH-HHHHHHHhcCCCCCEEcCCC
Confidence 9999988765 7777888899999999999877666667788888888888888 4543 12344455677777777777
Q ss_pred C-CCCcCCCCCCCCCCcccCCC-CCCEEECcCC--CCC-CCCcccccCCCCCcEEEcccCc-cccccchhhhcCCCCcEE
Q 003200 215 C-SLHHFPTLASPIPRGLQNLT-SLKHLDLDSN--HFN-SSIPDWLYKFSPLECLNLRNNS-LQGTISDAIGNLTSVSWL 288 (840)
Q Consensus 215 n-~l~~~~~~~~~l~~~l~~l~-~L~~L~Ls~n--~l~-~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L 288 (840)
| .+++.. ++..+..++ +|++|++++| .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++|
T Consensus 178 ~~~l~~~~-----~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L 252 (336)
T 2ast_B 178 CFDFTEKH-----VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 252 (336)
T ss_dssp CTTCCHHH-----HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred CCCcChHH-----HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEe
Confidence 7 665421 114466677 7777777777 344 3445556667777777777776 555666667777777777
Q ss_pred ecccccCccccCcccccCCCCCcEEEcCCC
Q 003200 289 DLSINIGLQGRIPRSMANFCNLKSVNLRGV 318 (840)
Q Consensus 289 ~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~ 318 (840)
++++|..........+..+++|+.|++++|
T Consensus 253 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 253 SLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred eCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 777743333332334566666666666666
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=5.5e-22 Score=200.40 Aligned_cols=196 Identities=15% Similarity=0.237 Sum_probs=111.1
Q ss_pred CcCEEEccCCcCCCCCCcccCCCCcccEEEccCCc-CcCCCCcccccCCCCcEEeCCC-CcccccCChhhhhccCCccEE
Q 003200 580 NLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNR-LSGKIPISLKNCTALASLDVDE-NEFVGNIPTWFGERFSRMLVL 657 (840)
Q Consensus 580 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~ls~-N~l~~~~p~~~~~~l~~L~~L 657 (840)
+|++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..+. .+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~-~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK-ELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE-CCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC-CCCCCCEE
Confidence 45555555555554444445555555555555554 4433334455555555555554 555433333333 45555555
Q ss_pred EccCCcccccCCccccCccccc---eeecccc-cccccCCccccccccCcccccccCcccccccCCcce-EEeCCCCccc
Q 003200 658 ILRSNQFHGPLPKTICDLAFLQ---ILDLADN-NLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVS-LLDISRNNFS 732 (840)
Q Consensus 658 ~l~~n~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~-~L~Ls~N~l~ 732 (840)
++++|++++ +|. +..+++|+ .|++++| ++++..+..+.++++| + .|++++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L-------------------~~~L~l~~n~l~ 169 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE-------------------TLTLKLYNNGFT 169 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-------------------EEEEECCSCCCC
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-------------------eeEEEcCCCCCc
Confidence 555555554 333 55555555 6667666 6664444456655555 6 6777777776
Q ss_pred ccCcccccCCCCCCeEeCCCCc-ccccCCcchhcc-CCCCeEeCCCCcccccCCccccCCCCCCeEeccCC
Q 003200 733 GEILSEVTNLKALQSINFSFNT-FTGRIPESIGTM-RALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNN 801 (840)
Q Consensus 733 ~~~~~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 801 (840)
.+|......++|+.|++++|+ +++..+..|..+ ++|++||+++|+++ .+|.. .+++|+.|+++++
T Consensus 170 -~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 170 -SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp -EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred -ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 344433333677777777774 775556667777 77777777777777 34443 4567777777765
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=3.7e-23 Score=221.09 Aligned_cols=251 Identities=18% Similarity=0.229 Sum_probs=196.9
Q ss_pred CCcEEEccCCcCcccCCchhhhccCCC--CcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCC-CCcccCCCCc
Q 003200 528 NLVYLDFSNNSFSGSISHFLCYRVNET--KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGN-LPNSLGSITS 604 (840)
Q Consensus 528 ~L~~L~l~~n~~~~~~~~~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~ 604 (840)
.++.++++++.+.. ..+ ..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++
T Consensus 48 ~~~~l~l~~~~~~~---~~~----~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 48 LWQTLDLTGKNLHP---DVT----GRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 119 (336)
T ss_dssp TSSEEECTTCBCCH---HHH----HHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred hheeeccccccCCH---HHH----HhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence 36677787777652 222 223 6889999999999877665 55789999999999998865 6777888999
Q ss_pred ccEEEccCCcCcCCCCcccccCCCCcEEeCCCC-ccccc-CChhhhhccCCccEEEccCC-ccccc-CCccccCcc-ccc
Q 003200 605 LVWLYLRKNRLSGKIPISLKNCTALASLDVDEN-EFVGN-IPTWFGERFSRMLVLILRSN-QFHGP-LPKTICDLA-FLQ 679 (840)
Q Consensus 605 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N-~l~~~-~p~~~~~~l~~L~~L~l~~n-~l~~~-~p~~l~~l~-~L~ 679 (840)
|++|++++|++++..+..+..+++|++|++++| .+++. ++..+. .+++|++|++++| .+++. ++..+..++ +|+
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 999999999998888888999999999999999 67653 555554 7899999999999 88764 567778888 999
Q ss_pred eeecccc--ccc-ccCCccccccccCcccccccCcccccccCCcceEEeCCCCc-ccccCcccccCCCCCCeEeCCCCc-
Q 003200 680 ILDLADN--NLS-GAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNN-FSGEILSEVTNLKALQSINFSFNT- 754 (840)
Q Consensus 680 ~L~Ls~N--~l~-~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~Ls~N~- 754 (840)
.|++++| .++ +.+|..+..+++| +.|++++|. +++..+..+..+++|+.|++++|.
T Consensus 199 ~L~l~~~~~~~~~~~l~~~~~~~~~L-------------------~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTLVRRCPNL-------------------VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp EEECCSCGGGSCHHHHHHHHHHCTTC-------------------SEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred EEEeCCCcccCCHHHHHHHHhhCCCC-------------------CEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence 9999999 454 3455555555555 999999999 788888899999999999999995
Q ss_pred ccccCCcchhccCCCCeEeCCCCcccccCCccccCC-CCCCeEeccCCcccccCCCC
Q 003200 755 FTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSL-TFLNHLNLSNNNLTGKIPLS 810 (840)
Q Consensus 755 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip~~ 810 (840)
+.......++++++|++|++++| ++. +.+..+ ..++.|++++|+++|..|..
T Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 260 IIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred CCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence 33222236889999999999999 432 234444 34788889999999988864
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.2e-21 Score=197.96 Aligned_cols=198 Identities=15% Similarity=0.146 Sum_probs=160.3
Q ss_pred CcccEEeccCCcCccccCccccCCCCcCEEEccCCc-CCCCCCcccCCCCcccEEEccC-CcCcCCCCcccccCCCCcEE
Q 003200 555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNK-FSGNLPNSLGSITSLVWLYLRK-NRLSGKIPISLKNCTALASL 632 (840)
Q Consensus 555 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L 632 (840)
+++++|++++|++++..+..|.++++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 467888888888887766678888888888888886 7766666788888888888888 88887666788888888888
Q ss_pred eCCCCcccccCChhhhhccCCcc---EEEccCC-cccccCCccccCccccc-eeecccccccccCCccccccccCccccc
Q 003200 633 DVDENEFVGNIPTWFGERFSRML---VLILRSN-QFHGPLPKTICDLAFLQ-ILDLADNNLSGAIPKCISNLTGMVTVKS 707 (840)
Q Consensus 633 ~ls~N~l~~~~p~~~~~~l~~L~---~L~l~~n-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~l~~ 707 (840)
++++|++++ +|. +. .+++|+ +|++++| .+++..+..|..+++|+ .|++++|+++ .+|......++|
T Consensus 111 ~l~~n~l~~-lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L----- 181 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKL----- 181 (239)
T ss_dssp EEEEECCCS-CCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEE-----
T ss_pred eCCCCCCcc-ccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCC-----
Confidence 888888875 666 44 677777 9999999 88888888899999999 9999999998 666543332445
Q ss_pred ccCcccccccCCcceEEeCCCCc-ccccCcccccCC-CCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCc
Q 003200 708 FTGSVVYREILPLVSLLDISRNN-FSGEILSEVTNL-KALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQ 778 (840)
Q Consensus 708 ~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 778 (840)
+.|++++|+ +++..+..|.++ ++|+.|++++|+++ .+|.. .+++|+.|+++++.
T Consensus 182 --------------~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 182 --------------DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp --------------EEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred --------------CEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 899999995 987777788999 99999999999999 45554 67899999998874
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=6.4e-21 Score=193.98 Aligned_cols=180 Identities=21% Similarity=0.248 Sum_probs=103.4
Q ss_pred cccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCC
Q 003200 556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVD 635 (840)
Q Consensus 556 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls 635 (840)
..++++++++.++ .+|..+. +++++|++++|++++..+..|..+++|++|++++|++++..+..+.++++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3455666666655 3343332 456666666666665555556666666666666666665555556666666666666
Q ss_pred CCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccccc
Q 003200 636 ENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYR 715 (840)
Q Consensus 636 ~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~ 715 (840)
+|++++..+..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|
T Consensus 92 ~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------------- 157 (251)
T 3m19_A 92 NNQLASLPLGVFD-HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL------------- 157 (251)
T ss_dssp TSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred CCcccccChhHhc-ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC-------------
Confidence 6666533333333 55666666666666665555555566666666666666654444445554444
Q ss_pred ccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCccccc
Q 003200 716 EILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGR 758 (840)
Q Consensus 716 ~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 758 (840)
+.|+|++|++++..+..+..+++|+.|++++|++++.
T Consensus 158 ------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 158 ------QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ------CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 5666666666655555556666666666666666543
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2.7e-21 Score=202.85 Aligned_cols=191 Identities=20% Similarity=0.295 Sum_probs=101.5
Q ss_pred CCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEe
Q 003200 554 TKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLD 633 (840)
Q Consensus 554 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 633 (840)
+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|++++|++++. ..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 4566666666666653 33 45666666666666666664333 66666666666666666532 2456666666666
Q ss_pred CCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccc
Q 003200 634 VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVV 713 (840)
Q Consensus 634 ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 713 (840)
+++|++++ ++. +. .+++|++|++++|++++..+ +..+++|+.|++++|++++ ++. +..+++|
T Consensus 114 l~~n~l~~-~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L----------- 175 (308)
T 1h6u_A 114 LTSTQITD-VTP-LA-GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKL----------- 175 (308)
T ss_dssp CTTSCCCC-CGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTC-----------
T ss_pred CCCCCCCC-chh-hc-CCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCC-----------
Confidence 66666653 232 22 45555555555555554332 4455555555555555542 221 3333333
Q ss_pred ccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCccc
Q 003200 714 YREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLS 780 (840)
Q Consensus 714 ~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 780 (840)
+.|++++|++++..+ +..+++|+.|++++|++++..| +..+++|++|++++|+++
T Consensus 176 --------~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 176 --------TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp --------CEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred --------CEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 555555555543222 4455555555555555553221 445555555555555554
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=3e-21 Score=202.56 Aligned_cols=191 Identities=20% Similarity=0.295 Sum_probs=93.1
Q ss_pred CCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcc
Q 003200 526 SSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSL 605 (840)
Q Consensus 526 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 605 (840)
+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|++++. ..+..+++|
T Consensus 40 l~~L~~L~l~~~~i~~l-~-----~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L 109 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI-E-----GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSI 109 (308)
T ss_dssp HHTCCEEECTTSCCCCC-T-----TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTC
T ss_pred cCCcCEEEeeCCCccCc-h-----hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCC
Confidence 34555555555554432 1 12334555555555555553322 55555555555555555532 235555555
Q ss_pred cEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeeccc
Q 003200 606 VWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLAD 685 (840)
Q Consensus 606 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~ 685 (840)
++|++++|++++. + .+..+++|++|++++|++++..+ +. .+++|+.|++++|++++..+ +..+++|+.|++++
T Consensus 110 ~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 110 KTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LA-GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADD 182 (308)
T ss_dssp CEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--cc-CCCCccEEEccCCcCCCChh--hcCCCCCCEEECCC
Confidence 5555555555432 2 25555555555555555543222 22 45555555555555554322 45555555555555
Q ss_pred ccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCccc
Q 003200 686 NNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFT 756 (840)
Q Consensus 686 N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 756 (840)
|++++..+ +..+++| +.|++++|++++.. .+..+++|+.|++++|+++
T Consensus 183 n~l~~~~~--l~~l~~L-------------------~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 183 NKISDISP--LASLPNL-------------------IEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp SCCCCCGG--GGGCTTC-------------------CEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred CccCcChh--hcCCCCC-------------------CEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 55542221 3333222 55555555555332 2455555555555555554
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=6e-20 Score=196.62 Aligned_cols=122 Identities=12% Similarity=0.123 Sum_probs=53.7
Q ss_pred cEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccC-ccccCCCCcCE-EEc
Q 003200 509 LFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIP-DCWMSYQNLKV-LKL 586 (840)
Q Consensus 509 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~-L~L 586 (840)
++++.++++++......++++++|++++|+++...+. .+.++++|++|+|++|++.+.+| .+|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTT----SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHH----HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 3455555555543322334455555555554433222 12334445555555554433332 23444444433 333
Q ss_pred cCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeC
Q 003200 587 SNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDV 634 (840)
Q Consensus 587 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 634 (840)
++|+++...|..|..+++|++|++++|++++..+..+....++..+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l 135 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 135 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEE
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhh
Confidence 344444444444444455555555555444333333333344444444
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=4e-20 Score=207.78 Aligned_cols=189 Identities=28% Similarity=0.374 Sum_probs=137.0
Q ss_pred CcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeC
Q 003200 555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDV 634 (840)
Q Consensus 555 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 634 (840)
.+++.|++++|.+++ +|..+ .++|++|++++|+++ .+| ..+++|++|++++|++++ +|. +.+ +|++|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 378888888888886 56554 367888888888888 455 346788888888888886 666 554 7888888
Q ss_pred CCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccc
Q 003200 635 DENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVY 714 (840)
Q Consensus 635 s~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 714 (840)
++|++++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|++++ +|. +. ++|
T Consensus 128 s~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L------------ 182 (571)
T 3cvr_A 128 DNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESL------------ 182 (571)
T ss_dssp CSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTC------------
T ss_pred CCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCC------------
Confidence 8888875 665 36788888888888876 444 46778888888888774 565 44 444
Q ss_pred cccCCcceEEeCCCCcccccCcccccCCCCC-------CeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccc
Q 003200 715 REILPLVSLLDISRNNFSGEILSEVTNLKAL-------QSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSM 787 (840)
Q Consensus 715 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 787 (840)
+.|+|++|+|+ .+|. +.. +| +.|+|++|+++ .+|..+..+++|+.|+|++|++++.+|..+
T Consensus 183 -------~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 183 -------EALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp -------CEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred -------CEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 77888888877 5565 544 56 77888888877 577777777888888888888877777776
Q ss_pred cCCC
Q 003200 788 SSLT 791 (840)
Q Consensus 788 ~~l~ 791 (840)
..++
T Consensus 251 ~~l~ 254 (571)
T 3cvr_A 251 SQQT 254 (571)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 6554
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=4.3e-20 Score=207.60 Aligned_cols=196 Identities=24% Similarity=0.334 Sum_probs=120.3
Q ss_pred CCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccE
Q 003200 528 NLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVW 607 (840)
Q Consensus 528 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 607 (840)
+++.|++++|.+++ +|..+ .++|+.|++++|.++ .+| ..+++|++|++++|++++ +|. +.. +|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l------~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~ 124 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL------PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKH 124 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC------CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCE
T ss_pred CccEEEeCCCCCCc-cCHhH------cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCE
Confidence 66677777777665 33222 246777777777776 445 335667777777777765 454 443 6777
Q ss_pred EEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeeccccc
Q 003200 608 LYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNN 687 (840)
Q Consensus 608 L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 687 (840)
|++++|++++ +|. .+++|+.|++++|++++ +|. .+++|++|++++|++++ +|. +. ++|+.|++++|+
T Consensus 125 L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 125 LDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNL 191 (571)
T ss_dssp EECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSC
T ss_pred EECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCC
Confidence 7777777765 444 46677777777777764 554 35667777777777765 444 44 667777777777
Q ss_pred ccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccC
Q 003200 688 LSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMR 767 (840)
Q Consensus 688 l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 767 (840)
++ .+|. +.. +| ....+.++.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..++
T Consensus 192 L~-~lp~-~~~--~L------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 192 LE-SLPA-VPV--RN------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CS-SCCC-CC----------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CC-chhh-HHH--hh------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 76 5554 332 11 011233466777777776 4666666677777777777777777776666654
Q ss_pred C
Q 003200 768 A 768 (840)
Q Consensus 768 ~ 768 (840)
.
T Consensus 255 ~ 255 (571)
T 3cvr_A 255 A 255 (571)
T ss_dssp H
T ss_pred c
Confidence 4
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=8.7e-20 Score=179.86 Aligned_cols=127 Identities=21% Similarity=0.226 Sum_probs=58.0
Q ss_pred EEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCc
Q 003200 559 GLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENE 638 (840)
Q Consensus 559 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~ 638 (840)
.++.+++.++ .+|..+ .++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|+
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 3444444444 223222 2355555555555554444445555555555555555554434444555555555555555
Q ss_pred ccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeeccccccc
Q 003200 639 FVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLS 689 (840)
Q Consensus 639 l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 689 (840)
+++..+..+. .+++|++|++++|++++..+..+..+++|+.|++++|+++
T Consensus 88 l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 88 LQSLPNGVFD-KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCccCHhHhc-CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence 5422222222 3444444444444444333333344444444444444444
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=5.9e-20 Score=181.06 Aligned_cols=175 Identities=16% Similarity=0.148 Sum_probs=106.6
Q ss_pred CEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccC
Q 003200 582 KVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRS 661 (840)
Q Consensus 582 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~ 661 (840)
+.++.+++.++ .+|..+ .++|++|++++|++++..+..+.++++|++|++++|+++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------------------- 65 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ--------------------- 65 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC---------------------
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC---------------------
Confidence 45556666555 233322 245566666666655444444555555555555555554
Q ss_pred CcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccC
Q 003200 662 NQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTN 741 (840)
Q Consensus 662 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 741 (840)
+..+..+..+++|++|++++|++++..+..+..+++| +.|++++|++++..+..+..
T Consensus 66 ----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------------~~L~L~~N~l~~~~~~~~~~ 122 (208)
T 2o6s_A 66 ----SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL-------------------KELALNTNQLQSLPDGVFDK 122 (208)
T ss_dssp ----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------------CEEECCSSCCCCCCTTTTTT
T ss_pred ----ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC-------------------CEEEcCCCcCcccCHhHhcc
Confidence 3434444556666666666666664444445555544 66677777666555555677
Q ss_pred CCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCCC
Q 003200 742 LKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLS 810 (840)
Q Consensus 742 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 810 (840)
+++|++|++++|++++..+..+..+++|++|++++|++.+. ++.|++|+++.|.++|.+|..
T Consensus 123 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 123 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCT
T ss_pred CCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeecc
Confidence 77777777777777765555677777777777777777643 346777777778888877764
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=1.2e-19 Score=194.24 Aligned_cols=241 Identities=15% Similarity=0.123 Sum_probs=188.9
Q ss_pred CcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCC-cccCCCCcccE
Q 003200 529 LVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLP-NSLGSITSLVW 607 (840)
Q Consensus 529 L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~ 607 (840)
-+.++.++++++.. |..+ .+++++|+|++|+++...+.+|.++++|++|+|++|++.+.+| ..|.++++++.
T Consensus 11 ~~~v~C~~~~Lt~i-P~~l------~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 11 NRVFLCQESKVTEI-PSDL------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp TTEEEEESTTCCSC-CTTC------CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred CCEEEecCCCCCcc-CcCc------CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 35788888888854 4332 2579999999999997767789999999999999999977555 57888988765
Q ss_pred -EEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccC-CcccccCCccccCcc-ccceeecc
Q 003200 608 -LYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRS-NQFHGPLPKTICDLA-FLQILDLA 684 (840)
Q Consensus 608 -L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~-n~l~~~~p~~l~~l~-~L~~L~Ls 684 (840)
+.+..|+++...|..|..+++|++|++++|++.+..+..+. ...++..+++.+ +++....+..+..+. .++.|+++
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~ 162 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI-HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTC-CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred hhcccCCcccccCchhhhhccccccccccccccccCCchhhc-ccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence 66777999988889999999999999999999865555554 567788898865 677777777777765 68999999
Q ss_pred cccccccCCccccccccCcccccccCcccccccCCcceEEeCCC-CcccccCc-ccccCCCCCCeEeCCCCcccccCCcc
Q 003200 685 DNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISR-NNFSGEIL-SEVTNLKALQSINFSFNTFTGRIPES 762 (840)
Q Consensus 685 ~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~-N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~ 762 (840)
+|+++ .+|.......++ +.+++++ |.++ .+| ..|..+++|++||+++|+++. +|..
T Consensus 163 ~N~i~-~i~~~~f~~~~L-------------------~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~ 220 (350)
T 4ay9_X 163 KNGIQ-EIHNSAFNGTQL-------------------DELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHS-LPSY 220 (350)
T ss_dssp SSCCC-EECTTSSTTEEE-------------------EEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCC-CCSS
T ss_pred ccccc-CCChhhccccch-------------------hHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCc-cChh
Confidence 99998 566554444455 8899986 5566 555 567999999999999999994 5542
Q ss_pred hhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCc
Q 003200 763 IGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNN 802 (840)
Q Consensus 763 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 802 (840)
.+.+|+.|.+.++.-...+| .+.++++|+.++++++.
T Consensus 221 --~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 221 --GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp --SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred --hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 34566666666655555788 48899999999998764
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=9.1e-20 Score=180.86 Aligned_cols=155 Identities=17% Similarity=0.222 Sum_probs=106.0
Q ss_pred EEeCCCCcccccCChhhhhccCCccEEEccCCcccccCC-ccccCccccceeecccccccccCCccccccccCccccccc
Q 003200 631 SLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLP-KTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFT 709 (840)
Q Consensus 631 ~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~ 709 (840)
.+++++|.++ .+|..+. ..+++|++++|++++..| ..|..+++|+.|++++|++++..+..+.++++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------- 83 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------- 83 (220)
T ss_dssp EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC-------
T ss_pred EeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC-------
Confidence 4555555554 3444332 334566666666665543 345666777777777777775555566666555
Q ss_pred CcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccC
Q 003200 710 GSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSS 789 (840)
Q Consensus 710 ~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 789 (840)
++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..+..
T Consensus 84 ------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 151 (220)
T 2v70_A 84 ------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151 (220)
T ss_dssp ------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT
T ss_pred ------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcC
Confidence 77777777777666666777777888888888887777777777888888888888887777777777
Q ss_pred CCCCCeEeccCCcccccCC
Q 003200 790 LTFLNHLNLSNNNLTGKIP 808 (840)
Q Consensus 790 l~~L~~L~ls~N~l~g~ip 808 (840)
+++|++|++++|++++..+
T Consensus 152 l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 152 LHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CTTCCEEECCSCCEECSGG
T ss_pred CCCCCEEEecCcCCcCCCc
Confidence 8888888888887776554
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.8e-18 Score=172.85 Aligned_cols=165 Identities=25% Similarity=0.282 Sum_probs=117.9
Q ss_pred CCCCCCCCccccceecCCCCCCEEEEEcCCCCCCCCCccccccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCc
Q 003200 55 SWTGDGDCCTWAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLR 134 (840)
Q Consensus 55 ~W~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~ 134 (840)
.|..+...|+|++|.|... ..+.+|..+. ++|++|+|++|.++++ .|..+..+++|+
T Consensus 11 ~~~~~~~~Cs~~~v~c~~~--------------------~l~~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~ 67 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRSK--------------------RHASVPAGIP--TNAQILYLHDNQITKL-EPGVFDSLINLK 67 (229)
T ss_dssp CCCCTTCEEETTEEECTTS--------------------CCSSCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCC
T ss_pred ccCCCCCEEeCCEeEccCC--------------------CcCccCCCCC--CCCCEEEcCCCccCcc-CHHHhhCccCCc
Confidence 4445788899999999631 2234444333 7888889988888875 577788888888
Q ss_pred EEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCC
Q 003200 135 YLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSN 214 (840)
Q Consensus 135 ~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~ 214 (840)
+|+|++|++.+..+..|.++++|++|++++|.++......|..+++|++|++++|+++.++
T Consensus 68 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp------------------- 128 (229)
T 3e6j_A 68 ELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP------------------- 128 (229)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCC-------------------
T ss_pred EEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccC-------------------
Confidence 8888888887666666788888888888888877666666666666666666666655432
Q ss_pred CCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccCcccccc
Q 003200 215 CSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTI 275 (840)
Q Consensus 215 n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 275 (840)
..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..
T Consensus 129 --------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 129 --------------RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp --------------TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred --------------cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 44566677777777777776555566677777777777777766543
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.6e-18 Score=180.09 Aligned_cols=190 Identities=18% Similarity=0.284 Sum_probs=130.0
Q ss_pred cccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCC
Q 003200 556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVD 635 (840)
Q Consensus 556 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls 635 (840)
.+..+.+..+.+++.. .+..+++|++|++++|.+... + .+..+++|++|++++|++++..+ +.++++|++|+++
T Consensus 25 ~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence 3444566666666543 245678889999999988854 3 47788889999999998886544 8888888888888
Q ss_pred CCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccccc
Q 003200 636 ENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYR 715 (840)
Q Consensus 636 ~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~ 715 (840)
+|++++ +|. +. .+++|++|++++|++++. ..+..+++|+.|++++|++++. ..+..+++|
T Consensus 99 ~n~l~~-~~~-l~-~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L------------- 158 (291)
T 1h6t_A 99 ENKVKD-LSS-LK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL------------- 158 (291)
T ss_dssp SSCCCC-GGG-GT-TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTC-------------
T ss_pred CCcCCC-Chh-hc-cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCC-------------
Confidence 888874 333 43 577777777777777653 3566677777777777777633 344444444
Q ss_pred ccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccc
Q 003200 716 EILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSG 781 (840)
Q Consensus 716 ~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 781 (840)
+.|++++|++++..+ +..+++|+.|++++|++++ +|. +..+++|+.|++++|+++.
T Consensus 159 ------~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 159 ------DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ------SEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEEC
T ss_pred ------CEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcCCcccC
Confidence 667777777765433 6667777777777777763 343 6667777777777777664
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=2.1e-18 Score=171.02 Aligned_cols=151 Identities=19% Similarity=0.231 Sum_probs=86.8
Q ss_pred EEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccC
Q 003200 631 SLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTG 710 (840)
Q Consensus 631 ~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~ 710 (840)
.++++++.++ .+|..+. ++++.|++++|++++..+..|..+++|+.|++++|++++..|..|.++++|
T Consensus 15 ~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L-------- 82 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL-------- 82 (220)
T ss_dssp EEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC--------
T ss_pred EEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC--------
Confidence 3444444444 3443321 345555555555555555555556666666666666655555555555544
Q ss_pred cccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCC
Q 003200 711 SVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSL 790 (840)
Q Consensus 711 ~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 790 (840)
++|+|++|++++..+..|..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..+..+
T Consensus 83 -----------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 151 (220)
T 2v9t_B 83 -----------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151 (220)
T ss_dssp -----------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred -----------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCC
Confidence 566666666664444445566666666666666666556666666666666666666665555556666
Q ss_pred CCCCeEeccCCccc
Q 003200 791 TFLNHLNLSNNNLT 804 (840)
Q Consensus 791 ~~L~~L~ls~N~l~ 804 (840)
++|++|++++|++.
T Consensus 152 ~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 152 RAIQTMHLAQNPFI 165 (220)
T ss_dssp TTCCEEECCSSCEE
T ss_pred CCCCEEEeCCCCcC
Confidence 66666666666654
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=2.6e-18 Score=170.39 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=83.3
Q ss_pred cEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCccccccc
Q 003200 630 ASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFT 709 (840)
Q Consensus 630 ~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~ 709 (840)
++|++++|++++..|...+..+++|++|++++|++++..+..|..+++|++|++++|++++..|..+..+++|
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------- 107 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL------- 107 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC-------
T ss_pred CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC-------
Confidence 3444444444433332222244555555555555555555556666666666666666665555556555555
Q ss_pred CcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccC
Q 003200 710 GSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEI 783 (840)
Q Consensus 710 ~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 783 (840)
++|+|++|++++..|..+..+++|+.|+|++|++++..|..|..+++|++|++++|++.+..
T Consensus 108 ------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 108 ------------KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp ------------CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred ------------CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 66777777777666677777777777777777777666777777777777777777776543
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.5e-18 Score=180.14 Aligned_cols=188 Identities=23% Similarity=0.382 Sum_probs=139.7
Q ss_pred EEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEc
Q 003200 531 YLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYL 610 (840)
Q Consensus 531 ~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 610 (840)
.+.+..+.+.+..+ ...+++|+.|++++|.++.. + .+..+++|++|++++|++++..+ +..+++|++|++
T Consensus 28 ~~~l~~~~~~~~~~------~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l 97 (291)
T 1h6t_A 28 KDNLKKKSVTDAVT------QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFL 97 (291)
T ss_dssp HHHTTCSCTTSEEC------HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred HHHhcCCCcccccc------hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEEC
Confidence 34455555554332 12357788888888888754 3 47788888888888888886544 788888888888
Q ss_pred cCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccc
Q 003200 611 RKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSG 690 (840)
Q Consensus 611 ~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 690 (840)
++|++++ +| .+..+++|++|++++|++++ ++ .+. .+++|+.|++++|++++. ..+..+++|+.|++++|++++
T Consensus 98 ~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~~-~l~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 98 DENKVKD-LS-SLKDLKKLKSLSLEHNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp CSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-CG-GGG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred CCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-Ch-hhc-CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence 8888874 33 48888888888888888875 33 344 688888888888888865 567888888888888888885
Q ss_pred cCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCccccc
Q 003200 691 AIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGR 758 (840)
Q Consensus 691 ~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 758 (840)
..| +..+++| +.|++++|.+++ ++ .+..+++|+.|++++|+++..
T Consensus 171 ~~~--l~~l~~L-------------------~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 171 IVP--LAGLTKL-------------------QNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CGG--GTTCTTC-------------------CEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred chh--hcCCCcc-------------------CEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 444 5555555 888888888875 34 488888888888888888753
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=6.2e-18 Score=168.87 Aligned_cols=154 Identities=21% Similarity=0.267 Sum_probs=92.4
Q ss_pred EEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccC
Q 003200 631 SLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTG 710 (840)
Q Consensus 631 ~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~ 710 (840)
.++.+++.+. .+|..+ .++|++|++++|.+++..|..+..+++|+.|++++|++.+..+..+..+++|
T Consensus 23 ~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L-------- 90 (229)
T 3e6j_A 23 TVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL-------- 90 (229)
T ss_dssp EEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------
T ss_pred EeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc--------
Confidence 3444444443 444432 2455555555555555555556666666666666666653333444554444
Q ss_pred cccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCC
Q 003200 711 SVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSL 790 (840)
Q Consensus 711 ~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 790 (840)
+.|+|++|++++..+..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..+
T Consensus 91 -----------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 158 (229)
T 3e6j_A 91 -----------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158 (229)
T ss_dssp -----------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred -----------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCC
Confidence 66666666666555555666667777777777766 566666667777777777777765555556666
Q ss_pred CCCCeEeccCCcccccCC
Q 003200 791 TFLNHLNLSNNNLTGKIP 808 (840)
Q Consensus 791 ~~L~~L~ls~N~l~g~ip 808 (840)
++|++|++++|++.+..+
T Consensus 159 ~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 159 SSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTCCEEECTTSCBCTTBG
T ss_pred CCCCEEEeeCCCccCCcc
Confidence 777777777776665443
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=2.3e-18 Score=184.99 Aligned_cols=177 Identities=22% Similarity=0.190 Sum_probs=132.6
Q ss_pred CEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccc-cCCCCcEEeCCCCcccccCChhhhhccCCccEEEcc
Q 003200 582 KVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLK-NCTALASLDVDENEFVGNIPTWFGERFSRMLVLILR 660 (840)
Q Consensus 582 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~ 660 (840)
+.++++++.++ .+|..+. ..++.|+|++|++++..+..+. ++++|++|++++|++++..+..+. .+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV-PVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc-CCCCCCEEECC
Confidence 68899999888 4566554 4688899999998877777776 888888888888888866656565 67888888888
Q ss_pred CCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccc-
Q 003200 661 SNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEV- 739 (840)
Q Consensus 661 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l- 739 (840)
+|++++..+..|..+++|+.|+|++|++++..|..+..+++| +.|+|++|++++..+..+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L-------------------~~L~L~~N~l~~l~~~~~~ 157 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL-------------------QKLYLSQNQISRFPVELIK 157 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-------------------CEEECCSSCCCSCCGGGTC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC-------------------CEEECCCCcCCeeCHHHhc
Confidence 888887777778888888888888888876667777776666 778888888875443334
Q ss_pred --cCCCCCCeEeCCCCcccccCCcchhccCC--CCeEeCCCCcccc
Q 003200 740 --TNLKALQSINFSFNTFTGRIPESIGTMRA--LESVDFSVNQLSG 781 (840)
Q Consensus 740 --~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~ 781 (840)
..+++|+.|+|++|++++..+..+..++. ++.|+|++|++..
T Consensus 158 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp ----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 56778888888888887655566777766 3778888887763
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=6e-18 Score=181.79 Aligned_cols=181 Identities=24% Similarity=0.224 Sum_probs=152.3
Q ss_pred ccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccC-CCCcccEEEccCCcCcCCCCcccccCCCCcEEeCC
Q 003200 557 LEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLG-SITSLVWLYLRKNRLSGKIPISLKNCTALASLDVD 635 (840)
Q Consensus 557 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls 635 (840)
-+.++++++.++ .+|..+. ..+++|+|++|++++..+..+. .+++|++|+|++|++++..+..|.++++|++|+++
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 368999999998 4666553 4689999999999988888887 89999999999999998888899999999999999
Q ss_pred CCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccccc
Q 003200 636 ENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYR 715 (840)
Q Consensus 636 ~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~ 715 (840)
+|++++..+..+. .+++|++|++++|++++..|..|..+++|+.|+|++|++++..+..+..+..
T Consensus 97 ~N~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~-------------- 161 (361)
T 2xot_A 97 SNHLHTLDEFLFS-DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK-------------- 161 (361)
T ss_dssp SSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC------------------
T ss_pred CCcCCcCCHHHhC-CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCccc--------------
Confidence 9999866555555 7999999999999999999999999999999999999999543334422111
Q ss_pred ccCCcceEEeCCCCcccccCcccccCCCC--CCeEeCCCCcccc
Q 003200 716 EILPLVSLLDISRNNFSGEILSEVTNLKA--LQSINFSFNTFTG 757 (840)
Q Consensus 716 ~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~--L~~L~Ls~N~l~~ 757 (840)
+++|+.|||++|+|++..+..+..++. ++.|+|++|.+..
T Consensus 162 --l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 162 --LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp --CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred --CCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 244499999999999777778888887 4899999999874
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=3.7e-18 Score=194.25 Aligned_cols=126 Identities=25% Similarity=0.387 Sum_probs=63.2
Q ss_pred CCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEe
Q 003200 554 TKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLD 633 (840)
Q Consensus 554 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 633 (840)
+++|+.|++++|.+... + .+..+++|+.|+|++|++++..+ +..+++|+.|+|++|++.+ +| .+..+++|+.|+
T Consensus 42 L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 44555555555555532 2 35555555555555555554333 5555555555555555543 22 455555555555
Q ss_pred CCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccc
Q 003200 634 VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSG 690 (840)
Q Consensus 634 ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 690 (840)
+++|.+.+ ++ .+. .+++|+.|+|++|++++. ..+..+++|+.|+|++|.+.+
T Consensus 116 Ls~N~l~~-l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 116 LEHNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CTTSCCCC-CG-GGG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred ecCCCCCC-Cc-ccc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 55555543 22 222 345555555555555443 334444455555555554443
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=7.4e-18 Score=191.77 Aligned_cols=186 Identities=22% Similarity=0.268 Sum_probs=119.0
Q ss_pred EEcccCcCCCCCCC-CCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCC
Q 003200 511 LSVNSNNMSGPLPL-VSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNN 589 (840)
Q Consensus 511 L~l~~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 589 (840)
+.+..+.+.+..+. .+++|+.|++++|.+.... .+..+++|+.|+|++|.+++..| +..+++|++|+|++|
T Consensus 26 l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 26 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT------TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred HhccCCCcccccchhcCCCCCEEECcCCCCCCCh------HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence 33444444443332 2566777777777766532 13456777777777777775544 667777777777777
Q ss_pred cCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCC
Q 003200 590 KFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLP 669 (840)
Q Consensus 590 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p 669 (840)
.+++. + .+..+++|+.|+|++|++.+. ..+..+++|+.|++++|++++. ..+. .+++|+.|+|++|++.+..|
T Consensus 98 ~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~-~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 98 KIKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLS-RLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp CCCCC-T-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGG-SCTTCSEEECCSSCCCCCGG
T ss_pred CCCCC-h-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhc-ccCCCCEEECcCCcCCCchh
Confidence 77642 2 567777777777777777642 3567777777777777777643 3343 57777777777777776555
Q ss_pred ccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCccccc
Q 003200 670 KTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGE 734 (840)
Q Consensus 670 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 734 (840)
+..+++|+.|+|++|++++ +| .+..+++| +.|+|++|++++.
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L-------------------~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISD-LR-ALAGLKNL-------------------DVLELFSQECLNK 212 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCB-CG-GGTTCTTC-------------------SEEECCSEEEECC
T ss_pred --hccCCCCCEEECcCCCCCC-Ch-HHccCCCC-------------------CEEEccCCcCcCC
Confidence 6677777777777777764 22 34444444 6777777777654
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=1.3e-17 Score=165.27 Aligned_cols=153 Identities=16% Similarity=0.248 Sum_probs=91.4
Q ss_pred CEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccC
Q 003200 582 KVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRS 661 (840)
Q Consensus 582 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~ 661 (840)
+.++++++.++ .+|..+. ++|+.|++++|++++..+..|..+++|++|++++|+++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~--------------------- 69 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS--------------------- 69 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC---------------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC---------------------
Confidence 45666666666 3444333 45666666666665544445555555555555555554
Q ss_pred CcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccC
Q 003200 662 NQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTN 741 (840)
Q Consensus 662 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 741 (840)
+..|..|.++++|+.|+|++|++++..+..+..+++| +.|+|++|++++..|..|..
T Consensus 70 ----~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L-------------------~~L~L~~N~l~~~~~~~~~~ 126 (220)
T 2v9t_B 70 ----ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL-------------------QLLLLNANKINCLRVDAFQD 126 (220)
T ss_dssp ----EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC-------------------CEEECCSSCCCCCCTTTTTT
T ss_pred ----CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCC-------------------CEEECCCCCCCEeCHHHcCC
Confidence 4444555555666666666666653333334444444 66666666666666666666
Q ss_pred CCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccc
Q 003200 742 LKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSG 781 (840)
Q Consensus 742 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 781 (840)
+++|+.|+|++|++++..+..|..+++|++|++++|++..
T Consensus 127 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 7777777777777776666666777777777777777653
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.3e-17 Score=162.58 Aligned_cols=153 Identities=19% Similarity=0.293 Sum_probs=102.3
Q ss_pred CCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCccc
Q 003200 626 CTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTV 705 (840)
Q Consensus 626 l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l 705 (840)
+++|+.|++++|.+. .+| .+. .+++|++|++++|.++. +..+..+++|++|++++|++++..|..+..+++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--- 114 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL--- 114 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC---
T ss_pred cCCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCC---
Confidence 334444444444443 333 222 34455555555553332 2356667777788888887776667777766666
Q ss_pred ccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCc
Q 003200 706 KSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQ 785 (840)
Q Consensus 706 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 785 (840)
+.|++++|++++..|..++.+++|++|++++|++.+.+| .+..+++|++|++++|++++ ++
T Consensus 115 ----------------~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~- 175 (197)
T 4ezg_A 115 ----------------TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR- 175 (197)
T ss_dssp ----------------CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-
T ss_pred ----------------CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-
Confidence 788888888887778888888888888888888333566 58888888888888888885 44
Q ss_pred cccCCCCCCeEeccCCcccc
Q 003200 786 SMSSLTFLNHLNLSNNNLTG 805 (840)
Q Consensus 786 ~l~~l~~L~~L~ls~N~l~g 805 (840)
.+..+++|++|++++|++.+
T Consensus 176 ~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp TGGGCSSCCEEEECBC----
T ss_pred HhccCCCCCEEEeeCcccCC
Confidence 77888889999998888754
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=1.2e-20 Score=213.55 Aligned_cols=202 Identities=18% Similarity=0.161 Sum_probs=108.7
Q ss_pred CCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEe
Q 003200 554 TKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLD 633 (840)
Q Consensus 554 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 633 (840)
+++|+.|++++|.++ .+|..++.+++|++|++++|......|. .+..+...+..|..+..+++|+.|+
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~-----------ll~~~~~~~~~~~~l~~l~~L~~L~ 415 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL-----------LMRALDPLLYEKETLQYFSTLKAVD 415 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHH-----------HHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHH-----------HHHhcccccCCHHHHHHHHhcccCc
Confidence 455666666666665 4555566666666666654431100000 0001123445566666666666666
Q ss_pred -CCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcc
Q 003200 634 -VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSV 712 (840)
Q Consensus 634 -ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~ 712 (840)
++.|.+. .|..+.+.+|.++...+ ..|+.|++++|.+++ +|. +..+++|
T Consensus 416 ~l~~n~~~------------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L---------- 465 (567)
T 1dce_A 416 PMRAAYLD------------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLV---------- 465 (567)
T ss_dssp GGGHHHHH------------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTC----------
T ss_pred chhhcccc------------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccC----------
Confidence 4544332 22233334444443211 135566666666653 443 5554444
Q ss_pred cccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccC-CccccCCC
Q 003200 713 VYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEI-PQSMSSLT 791 (840)
Q Consensus 713 ~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~ 791 (840)
+.|+|++|+++ .+|..++++++|+.|+|++|++++ +| .++.+++|++|+|++|++++.+ |..+..++
T Consensus 466 ---------~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~ 533 (567)
T 1dce_A 466 ---------THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCP 533 (567)
T ss_dssp ---------CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT
T ss_pred ---------cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCC
Confidence 56666666666 556666666666666666666664 45 5666666666666666666554 66666666
Q ss_pred CCCeEeccCCcccccCCC
Q 003200 792 FLNHLNLSNNNLTGKIPL 809 (840)
Q Consensus 792 ~L~~L~ls~N~l~g~ip~ 809 (840)
+|+.|++++|++++.+|.
T Consensus 534 ~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 534 RLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp TCCEEECTTSGGGGSSSC
T ss_pred CCCEEEecCCcCCCCccH
Confidence 666666666666665554
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=2.2e-20 Score=211.43 Aligned_cols=187 Identities=19% Similarity=0.250 Sum_probs=132.3
Q ss_pred CCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCc-------------ccccCChhhhhccCCccEEE-ccCCcccc
Q 003200 601 SITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENE-------------FVGNIPTWFGERFSRMLVLI-LRSNQFHG 666 (840)
Q Consensus 601 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~-------------l~~~~p~~~~~~l~~L~~L~-l~~n~l~~ 666 (840)
.+++|+.|+|++|+++ .+|..++++++|+.|++++|. ..+..|..+. .+++|+.|+ ++.|.+
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~-~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ-YFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHH-HHHHHHHHCGGGHHHH--
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHH-HHHhcccCcchhhccc--
Confidence 3455666666666665 556666666666666665554 2333444443 344555544 333322
Q ss_pred cCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCC
Q 003200 667 PLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQ 746 (840)
Q Consensus 667 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 746 (840)
..|+.+.+++|.+++..+ ..|+.|+|++|++++ +|. ++.+++|+
T Consensus 423 ---------~~L~~l~l~~n~i~~l~~-------------------------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~ 466 (567)
T 1dce_A 423 ---------DDLRSKFLLENSVLKMEY-------------------------ADVRVLHLAHKDLTV-LCH-LEQLLLVT 466 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHHHH-------------------------TTCSEEECTTSCCSS-CCC-GGGGTTCC
T ss_pred ---------chhhhhhhhcccccccCc-------------------------cCceEEEecCCCCCC-CcC-ccccccCc
Confidence 234444455555542111 124889999999996 676 99999999
Q ss_pred eEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccC-CCC-CcCCCcCcCCCCCC
Q 003200 747 SINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKI-PLS-TQLQSFNASSFAGN 824 (840)
Q Consensus 747 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i-p~~-~~~~~~~~~~~~gn 824 (840)
.|+|++|+++ .+|..|+.+++|+.|+|++|++++ +| .+..+++|++|++++|++++.+ |.. +.+..+....+.||
T Consensus 467 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 467 HLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred EeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 9999999999 899999999999999999999996 78 8999999999999999999986 654 55666666777788
Q ss_pred CCCCCC
Q 003200 825 DLCGAP 830 (840)
Q Consensus 825 ~lcg~~ 830 (840)
.+++.|
T Consensus 544 ~l~~~~ 549 (567)
T 1dce_A 544 SLCQEE 549 (567)
T ss_dssp GGGGSS
T ss_pred cCCCCc
Confidence 776653
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.2e-17 Score=170.41 Aligned_cols=169 Identities=15% Similarity=0.227 Sum_probs=93.5
Q ss_pred CCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEE
Q 003200 578 YQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVL 657 (840)
Q Consensus 578 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L 657 (840)
+.++..+++++|.+++.. .+..+++|++|++++|.++ .+| .+..+++|++|++++|++++..+ +. .+++|+.|
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~-~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LK-DLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GT-TCSSCCEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hc-cCCCCCEE
Confidence 445666677777776432 4566677777777777776 334 56666777777777777664332 33 56666666
Q ss_pred EccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcc
Q 003200 658 ILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILS 737 (840)
Q Consensus 658 ~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~ 737 (840)
++++|++++..+ +.. ++|+.|++++|++++ ++ .+..+++| +.|++++|++++. +
T Consensus 91 ~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L-------------------~~L~Ls~N~i~~~-~- 144 (263)
T 1xeu_A 91 SVNRNRLKNLNG--IPS-ACLSRLFLDNNELRD-TD-SLIHLKNL-------------------EILSIRNNKLKSI-V- 144 (263)
T ss_dssp ECCSSCCSCCTT--CCC-SSCCEEECCSSCCSB-SG-GGTTCTTC-------------------CEEECTTSCCCBC-G-
T ss_pred ECCCCccCCcCc--ccc-CcccEEEccCCccCC-Ch-hhcCcccc-------------------cEEECCCCcCCCC-h-
Confidence 666666654322 112 555556666655553 22 23333333 5555555555532 2
Q ss_pred cccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccc
Q 003200 738 EVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSG 781 (840)
Q Consensus 738 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 781 (840)
.+..+++|+.|++++|++++. ..+..+++|+.|++++|++++
T Consensus 145 ~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 145 MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 455555555555555555543 345555555555555555553
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=1.3e-17 Score=161.43 Aligned_cols=130 Identities=19% Similarity=0.280 Sum_probs=72.2
Q ss_pred cEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCc-cccCccccceeecccccccccCCccccccccCcccccc
Q 003200 630 ASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPK-TICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSF 708 (840)
Q Consensus 630 ~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~ 708 (840)
+.+++++|.++ .+|..+. .++++|++++|++++..+. .+..+++|+.|++++|++++..|..+.++++|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------ 80 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------ 80 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence 56677777664 5555433 2556666666666555443 35555555555555555555555555554444
Q ss_pred cCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCccccc
Q 003200 709 TGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGE 782 (840)
Q Consensus 709 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 782 (840)
+.|+|++|++++..+..|.++++|++|+|++|++++.+|..|+.+++|++|++++|++.+.
T Consensus 81 -------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 81 -------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp -------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred -------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 5555555555555555555555555555555555555555555555555555555555543
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=3.2e-18 Score=200.01 Aligned_cols=185 Identities=18% Similarity=0.177 Sum_probs=85.0
Q ss_pred CCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCcccc
Q 003200 594 NLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTIC 673 (840)
Q Consensus 594 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~ 673 (840)
..+..+..+..|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..+. .+++|++|+|++|.|+ .+|..+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhc
Confidence 33455555666666666666665 45555556666666666666665 5565554 5666666666666666 4466666
Q ss_pred CccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCC-CCeEeCCC
Q 003200 674 DLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKA-LQSINFSF 752 (840)
Q Consensus 674 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~-L~~L~Ls~ 752 (840)
.+++|+.|+|++|.++ .+|..|.++++| +.|+|++|.+++.+|..+..+.. +..++|++
T Consensus 291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L-------------------~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~ 350 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNL-------------------QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRD 350 (727)
T ss_dssp GGTTCSEEECCSSCCC-CCCSSTTSCTTC-------------------CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEECCCCCCC-ccChhhhcCCCc-------------------cEEeCCCCccCCCChHHHhhcchhhhHHhhcc
Confidence 6666666666666665 555555555555 56666666666666655544321 12356666
Q ss_pred CcccccCCcchhccCCCCeEeCCCC--------cccccCCccccCCCCCCeEeccCCcccccCC
Q 003200 753 NTFTGRIPESIGTMRALESVDFSVN--------QLSGEIPQSMSSLTFLNHLNLSNNNLTGKIP 808 (840)
Q Consensus 753 N~l~~~~p~~l~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 808 (840)
|.+++.+|.. |+.|++++| .+.+.++..+..+..+....+++|-+.+...
T Consensus 351 N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~ 408 (727)
T 4b8c_D 351 NRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYA 408 (727)
T ss_dssp CCCCCCCCCC-----------------------------------------------CCCGGGC
T ss_pred CcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccccccC
Confidence 6666666543 344455555 3333334444555566666667776654433
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=3.7e-17 Score=159.19 Aligned_cols=155 Identities=17% Similarity=0.239 Sum_probs=94.1
Q ss_pred cCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCcc
Q 003200 576 MSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRML 655 (840)
Q Consensus 576 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~ 655 (840)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+.. +++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~-------------------------l~~L~ 91 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISG-------------------------LSNLE 91 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTT-------------------------CTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhc-------------------------CCCCC
Confidence 34455555555555555 233 3455555555555555433 1223333 55555
Q ss_pred EEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccC
Q 003200 656 VLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEI 735 (840)
Q Consensus 656 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 735 (840)
+|++++|++++..|..+..+++|+.|++++|++++..|..+..+++| +.|++++|++.+.+
T Consensus 92 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L-------------------~~L~L~~n~~i~~~ 152 (197)
T 4ezg_A 92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV-------------------NSIDLSYNGAITDI 152 (197)
T ss_dssp EEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC-------------------CEEECCSCTBCCCC
T ss_pred EEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC-------------------CEEEccCCCCcccc
Confidence 55555555555555566667777777777777776566666655555 77777777622244
Q ss_pred cccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccc
Q 003200 736 LSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSG 781 (840)
Q Consensus 736 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 781 (840)
| .+..+++|+.|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus 153 ~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 153 M-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp G-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred H-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 4 57778888888888888884 44 67888888888888888763
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=8.6e-18 Score=171.53 Aligned_cols=170 Identities=20% Similarity=0.277 Sum_probs=124.8
Q ss_pred CCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEe
Q 003200 554 TKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLD 633 (840)
Q Consensus 554 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 633 (840)
+..+..++++++.+++.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +.++++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 345666777777777443 46677788888888888774 34 57777888888888888875443 77788888888
Q ss_pred CCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccc
Q 003200 634 VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVV 713 (840)
Q Consensus 634 ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 713 (840)
+++|++++ +|... . ++|+.|++++|++++. ..+..+++|+.|++++|++++. | .+..+++|
T Consensus 92 L~~N~l~~-l~~~~--~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L----------- 152 (263)
T 1xeu_A 92 VNRNRLKN-LNGIP--S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKL----------- 152 (263)
T ss_dssp CCSSCCSC-CTTCC--C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTC-----------
T ss_pred CCCCccCC-cCccc--c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCC-----------
Confidence 88888874 44322 2 7788888888888764 3577888888888888888743 3 45555555
Q ss_pred ccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCccccc
Q 003200 714 YREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGR 758 (840)
Q Consensus 714 ~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 758 (840)
+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 153 --------~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 153 --------EVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --------CEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred --------CEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 8888888888865 6678888888888888888855
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=7.1e-18 Score=197.14 Aligned_cols=192 Identities=20% Similarity=0.215 Sum_probs=119.6
Q ss_pred EeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcc
Q 003200 560 LKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEF 639 (840)
Q Consensus 560 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l 639 (840)
++++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+.++++|++|+|++|++
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 334444444 55777888999999999999998 66767778899999999999998 8888899999999999999999
Q ss_pred cccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCC
Q 003200 640 VGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILP 719 (840)
Q Consensus 640 ~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~ 719 (840)
+ .+|..+. .+++|++|+|++|.++ .+|..|..+++|+.|+|++|++++.+|..+..+...
T Consensus 283 ~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~----------------- 342 (727)
T 4b8c_D 283 T-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT----------------- 342 (727)
T ss_dssp S-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHH-----------------
T ss_pred C-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchh-----------------
Confidence 8 7888887 7899999999999987 668789999999999999999998888777654321
Q ss_pred cceEEeCCCCcccccCcccccCCCCCCeEeCCCC--------cccccCCcchhccCCCCeEeCCCCcccc
Q 003200 720 LVSLLDISRNNFSGEILSEVTNLKALQSINFSFN--------TFTGRIPESIGTMRALESVDFSVNQLSG 781 (840)
Q Consensus 720 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 781 (840)
...++|++|.+++.+|.. |+.|++++| .+.+..+..+..+..++...+++|-+.+
T Consensus 343 -~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 343 -GLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp -HHHHHHHHCCCCCCCCCC-----------------------------------------------CCCG
T ss_pred -hhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence 024678888888887764 455666666 4555555566677777788888888753
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=5e-17 Score=172.36 Aligned_cols=96 Identities=16% Similarity=0.160 Sum_probs=50.4
Q ss_pred CCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCC-EEEccCCccccccChhhhccCCCCCEEE
Q 003200 338 GLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLR-ELQIYDNKLNGTLSEFHFANLTKLSWFR 416 (840)
Q Consensus 338 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~i~~~~~~~l~~L~~L~ 416 (840)
+|+.+++++|+++...+.+|..+++|+++++.+| +..+.+.+|.+|++|+ .+++.+ .+. .|+..+|.++++|+.++
T Consensus 227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEE
T ss_pred CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEE
Confidence 5555555555555555555555555666655555 4444455555555555 555555 333 44444555555555555
Q ss_pred ccCcccceeccCCCCCccCc
Q 003200 417 VGGNQLTFEVKHDWIPPFQL 436 (840)
Q Consensus 417 L~~n~l~~~~~~~~~~~~~L 436 (840)
+++|.++......|..+.+|
T Consensus 304 l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp ECSSCCCEECTTTTCTTCCC
T ss_pred eCCCccCccchhhhcCCcch
Confidence 55555544443333333333
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=1.9e-16 Score=153.26 Aligned_cols=132 Identities=20% Similarity=0.245 Sum_probs=79.7
Q ss_pred cEEEccCCcccccCCccccCccccceeecccccccccCCc-cccccccCcccccccCcccccccCCcceEEeCCCCcccc
Q 003200 655 LVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPK-CISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSG 733 (840)
Q Consensus 655 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 733 (840)
+.+++++|.++ .+|..+.. +++.|++++|++++..+. .+..+++| ++|+|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L-------------------~~L~Ls~N~l~~ 68 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHL-------------------VKLELKRNQLTG 68 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTC-------------------CEEECCSSCCCC
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCC-------------------CEEECCCCCCCC
Confidence 45666666664 34444322 566666666666644333 24454444 666666666666
Q ss_pred cCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccCC
Q 003200 734 EILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIP 808 (840)
Q Consensus 734 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 808 (840)
..|..|.++++|++|+|++|++++..|..|+.+++|++|+|++|++++.+|..+..+++|++|++++|++++..|
T Consensus 69 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 69 IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp BCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 666666666666666666666666666666666666666666666666666666666666666666666665544
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=2.6e-16 Score=166.86 Aligned_cols=220 Identities=10% Similarity=0.066 Sum_probs=154.3
Q ss_pred CCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCc----CcCCCCcccccCCCC
Q 003200 554 TKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNR----LSGKIPISLKNCTAL 629 (840)
Q Consensus 554 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~----l~~~~p~~l~~l~~L 629 (840)
+++|+.|++.+ .++.+.+.+|.+|++|+.+++++|.+..+.+.+|..+.++..+....+. .......+|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 78888888888 7877777788889999999999988887777888887777777766532 222334566777777
Q ss_pred c-EEeCCCCcccccCChhhhh---ccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCccc
Q 003200 630 A-SLDVDENEFVGNIPTWFGE---RFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTV 705 (840)
Q Consensus 630 ~-~L~ls~N~l~~~~p~~~~~---~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l 705 (840)
+ .+++.... .++..+.. ...++..+.+.++-...........+++|+.+++++|+++...+.+|.++++|
T Consensus 179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L--- 252 (329)
T 3sb4_A 179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL--- 252 (329)
T ss_dssp EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC---
T ss_pred ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC---
Confidence 7 55554332 33333322 23445555555432111111111236788888888888885545577777777
Q ss_pred ccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCC-eEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCC
Q 003200 706 KSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQ-SINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIP 784 (840)
Q Consensus 706 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 784 (840)
+.+++++| ++...+..|.++++|+ .+++.+ +++...+.+|.++++|+.+++++|+++..-+
T Consensus 253 ----------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 253 ----------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp ----------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred ----------------CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence 88888887 7766677788888898 898888 7776677888899999999998888886666
Q ss_pred ccccCCCCCCeEec
Q 003200 785 QSMSSLTFLNHLNL 798 (840)
Q Consensus 785 ~~l~~l~~L~~L~l 798 (840)
..|.++++|+.++.
T Consensus 315 ~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 315 ELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTCTTCCCCEEEC
T ss_pred hhhcCCcchhhhcc
Confidence 68888888888763
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.3e-15 Score=144.11 Aligned_cols=133 Identities=18% Similarity=0.216 Sum_probs=89.0
Q ss_pred CCccEEEccCCccc-ccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCc
Q 003200 652 SRMLVLILRSNQFH-GPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNN 730 (840)
Q Consensus 652 ~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~ 730 (840)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++| +.|++++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L-------------------~~L~Ls~N~ 82 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKL-------------------KKLELSENR 82 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSC-------------------CEEEEESCC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCC-------------------CEEECcCCc
Confidence 45666666666665 45566666667777777777776643 445544444 777777777
Q ss_pred ccccCcccccCCCCCCeEeCCCCcccccC-CcchhccCCCCeEeCCCCcccccCC---ccccCCCCCCeEeccCCcccc
Q 003200 731 FSGEILSEVTNLKALQSINFSFNTFTGRI-PESIGTMRALESVDFSVNQLSGEIP---QSMSSLTFLNHLNLSNNNLTG 805 (840)
Q Consensus 731 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~N~l~g 805 (840)
+++.+|..+.++++|++|++++|++++.. +..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+..
T Consensus 83 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 83 IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 77666666666777777777777777432 2667777777777777777775444 367777777777777777643
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1.3e-15 Score=144.06 Aligned_cols=137 Identities=20% Similarity=0.238 Sum_probs=104.8
Q ss_pred CCCcEEeCCCCccc-ccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCccc
Q 003200 627 TALASLDVDENEFV-GNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTV 705 (840)
Q Consensus 627 ~~L~~L~ls~N~l~-~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l 705 (840)
++|++|++++|.++ +.+|..+. .+++|++|++++|.+++. ..+..+++|+.|++++|++++.+|..+..+++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--- 97 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL--- 97 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC---
T ss_pred ccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC---
Confidence 56677777777766 56666544 567777777777777755 667778888888888888886677666666665
Q ss_pred ccccCcccccccCCcceEEeCCCCcccccC-cccccCCCCCCeEeCCCCcccccCC---cchhccCCCCeEeCCCCcccc
Q 003200 706 KSFTGSVVYREILPLVSLLDISRNNFSGEI-LSEVTNLKALQSINFSFNTFTGRIP---ESIGTMRALESVDFSVNQLSG 781 (840)
Q Consensus 706 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~ 781 (840)
+.|++++|++++.. +..+..+++|+.|++++|++++..+ ..+..+++|++|++++|.+.
T Consensus 98 ----------------~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~- 160 (168)
T 2ell_A 98 ----------------THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ- 160 (168)
T ss_dssp ----------------CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-
T ss_pred ----------------CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-
Confidence 88899999888542 2778899999999999999996555 47889999999999999987
Q ss_pred cCCcc
Q 003200 782 EIPQS 786 (840)
Q Consensus 782 ~~p~~ 786 (840)
.+|++
T Consensus 161 ~~~~~ 165 (168)
T 2ell_A 161 EAPDS 165 (168)
T ss_dssp BCCSS
T ss_pred hcccc
Confidence 56654
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1e-15 Score=141.66 Aligned_cols=129 Identities=19% Similarity=0.214 Sum_probs=99.2
Q ss_pred cCCccEEEccCCccc-ccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCC
Q 003200 651 FSRMLVLILRSNQFH-GPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRN 729 (840)
Q Consensus 651 l~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N 729 (840)
.++++.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++| +.|++++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L-------------------~~L~Ls~n 74 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKL-------------------KKLELSDN 74 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTC-------------------CEEECCSS
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCC-------------------CEEECCCC
Confidence 456777777777776 66777777788888888888888744 455555555 88888888
Q ss_pred cccccCcccccCCCCCCeEeCCCCccccc-CCcchhccCCCCeEeCCCCcccccCC---ccccCCCCCCeEeccC
Q 003200 730 NFSGEILSEVTNLKALQSINFSFNTFTGR-IPESIGTMRALESVDFSVNQLSGEIP---QSMSSLTFLNHLNLSN 800 (840)
Q Consensus 730 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~ 800 (840)
++++.+|..+..+++|++|++++|++++. .|..++.+++|++|++++|++++..+ ..+..+++|++|++++
T Consensus 75 ~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 75 RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred cccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 88877787777888888888888888863 34778888888888888888886555 4688888888888764
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=5e-15 Score=143.13 Aligned_cols=110 Identities=24% Similarity=0.339 Sum_probs=69.3
Q ss_pred cccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcc
Q 003200 676 AFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTF 755 (840)
Q Consensus 676 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l 755 (840)
++|+.|++++|+++ .+|..+.++++| +.|+|++|++++..+..|.++++|++|+|++|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L-------------------~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHL-------------------TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTC-------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCC-------------------CEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 35566666666665 555555555444 6666666666655555666666666666666666
Q ss_pred cccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccc
Q 003200 756 TGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTG 805 (840)
Q Consensus 756 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 805 (840)
++..|..|..+++|++|+|++|++++..+..+..+++|++|++++|++..
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 66666666666667777777776664444456666667777777776653
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=7.1e-15 Score=140.32 Aligned_cols=132 Identities=19% Similarity=0.198 Sum_probs=87.5
Q ss_pred cEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCccccc
Q 003200 655 LVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGE 734 (840)
Q Consensus 655 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 734 (840)
+.+++++|.++. +|..+ .++|+.|++++|++++..+..+..+++| ++|++++|++++.
T Consensus 10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L-------------------~~L~l~~n~l~~~ 67 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQL-------------------TKLSLSQNQIQSL 67 (177)
T ss_dssp TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTC-------------------SEEECCSSCCCCC
T ss_pred CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccc-------------------cEEECCCCcceEe
Confidence 344445554442 22222 2456666676666664444455555555 6777777777755
Q ss_pred CcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccCC
Q 003200 735 ILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIP 808 (840)
Q Consensus 735 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 808 (840)
.+..+..+++|++|++++|++++..+..++.+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 68 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 68 PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 55556777778888888888876666667778888888888888875555556777888888888888877666
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=4.6e-15 Score=137.20 Aligned_cols=129 Identities=19% Similarity=0.222 Sum_probs=108.2
Q ss_pred CCcccEEeccCCcCc-cccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEE
Q 003200 554 TKSLEGLKLTDNYLQ-GEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASL 632 (840)
Q Consensus 554 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 632 (840)
.++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|++++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467889999999988 67888888899999999999999866 678888999999999999987788888889999999
Q ss_pred eCCCCccccc-CChhhhhccCCccEEEccCCcccccCC---ccccCccccceeeccc
Q 003200 633 DVDENEFVGN-IPTWFGERFSRMLVLILRSNQFHGPLP---KTICDLAFLQILDLAD 685 (840)
Q Consensus 633 ~ls~N~l~~~-~p~~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~Ls~ 685 (840)
++++|++++. .+..+. .+++|++|++++|.+++..+ ..+..+++|+.||+++
T Consensus 94 ~ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999998853 335555 78899999999999987766 5788889999998864
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=1.8e-14 Score=139.21 Aligned_cols=127 Identities=21% Similarity=0.270 Sum_probs=80.9
Q ss_pred EEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccC
Q 003200 631 SLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTG 710 (840)
Q Consensus 631 ~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~ 710 (840)
.+++++|.++ .+|..+ .+++++|++++|+++ .+|..+..+++|+.|++++|++++..+..|.++++|
T Consensus 14 ~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L-------- 80 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL-------- 80 (193)
T ss_dssp EEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC--------
T ss_pred EEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC--------
Confidence 4455555544 444432 235555555555555 344556666666667777776665555556665555
Q ss_pred cccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccc
Q 003200 711 SVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSG 781 (840)
Q Consensus 711 ~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 781 (840)
+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++..
T Consensus 81 -----------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 81 -----------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp -----------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred -----------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 667777777776666667777777777777777775555567777777777777777753
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=2e-14 Score=137.23 Aligned_cols=132 Identities=17% Similarity=0.214 Sum_probs=94.3
Q ss_pred cEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCccccccc
Q 003200 630 ASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFT 709 (840)
Q Consensus 630 ~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~ 709 (840)
+.+++++|.++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------- 78 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL------- 78 (177)
T ss_dssp TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc-------
Confidence 45555555554 444432 3566777777777766666666777778888888888775555556666655
Q ss_pred CcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCC
Q 003200 710 GSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIP 784 (840)
Q Consensus 710 ~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 784 (840)
+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus 79 ------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 79 ------------TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp ------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ------------CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 788888888886666667888888888888888886666667888888888888888886554
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=2.3e-16 Score=153.74 Aligned_cols=151 Identities=19% Similarity=0.271 Sum_probs=86.0
Q ss_pred CCCcEEeCCCCcccccCCh------hhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccc
Q 003200 627 TALASLDVDENEFVGNIPT------WFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLT 700 (840)
Q Consensus 627 ~~L~~L~ls~N~l~~~~p~------~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 700 (840)
..++.++++.+.+.+.+|. .+. .+++|++|++++|.+++ +| .+..+++|+.|++++|+++ .+|..+..++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 3444444444444444333 443 45555555555555554 34 5555666666666666665 4454444434
Q ss_pred cCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCC-cchhccCCCCeEeCCCCcc
Q 003200 701 GMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIP-ESIGTMRALESVDFSVNQL 779 (840)
Q Consensus 701 ~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l 779 (840)
+| +.|++++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|++
T Consensus 94 ~L-------------------~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 94 TL-------------------EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HC-------------------SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred cC-------------------CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 44 666666666664 33 46666677777777777664222 3566677777777777777
Q ss_pred cccCCcc----------ccCCCCCCeEeccCCccc
Q 003200 780 SGEIPQS----------MSSLTFLNHLNLSNNNLT 804 (840)
Q Consensus 780 ~~~~p~~----------l~~l~~L~~L~ls~N~l~ 804 (840)
++.+|.. +..+++|++|| +|+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 153 YNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 6655542 66677777776 55554
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=4e-14 Score=134.87 Aligned_cols=82 Identities=11% Similarity=0.148 Sum_probs=53.6
Q ss_pred eEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCc--chhccCCCCeEeCCCCcccccCCcc----ccCCCCCCe
Q 003200 722 SLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPE--SIGTMRALESVDFSVNQLSGEIPQS----MSSLTFLNH 795 (840)
Q Consensus 722 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~ 795 (840)
+.|++++|++++..+..+..+++|++|++++|+++ .+|. .++.+++|++|++++|+++ .+|.. +..+++|++
T Consensus 67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~ 144 (176)
T 1a9n_A 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV 144 (176)
T ss_dssp CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence 66666666666443344466777777777777775 4554 6667777777777777776 45553 667777777
Q ss_pred EeccCCcccc
Q 003200 796 LNLSNNNLTG 805 (840)
Q Consensus 796 L~ls~N~l~g 805 (840)
||+++|....
T Consensus 145 Ld~~~n~~~~ 154 (176)
T 1a9n_A 145 LDFQKVKLKE 154 (176)
T ss_dssp ETTEECCHHH
T ss_pred eCCCcCCHHH
Confidence 7777776644
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=9.9e-16 Score=149.20 Aligned_cols=133 Identities=17% Similarity=0.198 Sum_probs=95.5
Q ss_pred ccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCcccccccc
Q 003200 622 SLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTG 701 (840)
Q Consensus 622 ~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 701 (840)
.+..+++|++|++++|.+++ +| .+. .+++|++|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLS-GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHH-HHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccc-cCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 66666777777777777664 55 444 5677777777777776 456666667788888888888874 44 4555555
Q ss_pred CcccccccCcccccccCCcceEEeCCCCcccccCc-ccccCCCCCCeEeCCCCcccccCCcc----------hhccCCCC
Q 003200 702 MVTVKSFTGSVVYREILPLVSLLDISRNNFSGEIL-SEVTNLKALQSINFSFNTFTGRIPES----------IGTMRALE 770 (840)
Q Consensus 702 L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~ 770 (840)
| +.|++++|++++..+ ..+..+++|++|++++|++++.+|.. +..+++|+
T Consensus 117 L-------------------~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 117 L-------------------RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp S-------------------SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred C-------------------CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcE
Confidence 5 788888888875332 46788889999999999988776653 78899999
Q ss_pred eEeCCCCcccc
Q 003200 771 SVDFSVNQLSG 781 (840)
Q Consensus 771 ~L~Ls~N~l~~ 781 (840)
.|| +|.++.
T Consensus 178 ~Ld--~~~i~~ 186 (198)
T 1ds9_A 178 KLD--GMPVDV 186 (198)
T ss_dssp EEC--CGGGTT
T ss_pred EEC--CcccCH
Confidence 887 676653
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=7.5e-14 Score=132.94 Aligned_cols=135 Identities=17% Similarity=0.171 Sum_probs=98.0
Q ss_pred ccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCcccccccc
Q 003200 622 SLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTG 701 (840)
Q Consensus 622 ~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 701 (840)
.+.++.+|++|++++|.++ .+|. +....++|++|++++|.+++. ..+..+++|++|++++|++++..|..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3445566666666666666 3343 332334777777777777765 56777888888888888888543344466665
Q ss_pred CcccccccCcccccccCCcceEEeCCCCcccccCcc--cccCCCCCCeEeCCCCcccccCCcc----hhccCCCCeEeCC
Q 003200 702 MVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILS--EVTNLKALQSINFSFNTFTGRIPES----IGTMRALESVDFS 775 (840)
Q Consensus 702 L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~--~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~Ls 775 (840)
| +.|++++|+++ .+|. .+..+++|+.|++++|+++ .+|.. +..+++|+.||++
T Consensus 90 L-------------------~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 90 L-------------------TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp C-------------------CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTE
T ss_pred C-------------------CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCC
Confidence 5 88899999886 4555 7888999999999999998 56664 8899999999999
Q ss_pred CCcccc
Q 003200 776 VNQLSG 781 (840)
Q Consensus 776 ~N~l~~ 781 (840)
+|....
T Consensus 149 ~n~~~~ 154 (176)
T 1a9n_A 149 KVKLKE 154 (176)
T ss_dssp ECCHHH
T ss_pred cCCHHH
Confidence 998764
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.47 E-value=1.3e-12 Score=141.17 Aligned_cols=219 Identities=11% Similarity=0.095 Sum_probs=168.3
Q ss_pred cccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCC
Q 003200 556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVD 635 (840)
Q Consensus 556 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls 635 (840)
+|+.+.+.. .++...+.+|.+|++|+.+++++|+++......|. +.+|+.+.+..+ ++.....+|.+|++|+.+++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 688888886 66667778899999999999999998876666776 588999999854 666677788999999999998
Q ss_pred CCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeeccccccc-----ccCCccccccccCcccccccC
Q 003200 636 ENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLS-----GAIPKCISNLTGMVTVKSFTG 710 (840)
Q Consensus 636 ~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~l~~~~~ 710 (840)
.| ++ .++...+.. .+|+.+.+ .+.++.+.+.+|.++++|+.+++.+|.+. ...+.+|.++++|
T Consensus 235 ~~-l~-~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L-------- 302 (401)
T 4fdw_A 235 EN-VS-TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL-------- 302 (401)
T ss_dssp TT-CC-EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC--------
T ss_pred CC-cc-Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC--------
Confidence 75 44 455544434 78999988 45577677888999999999999887764 2334567776666
Q ss_pred cccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCC
Q 003200 711 SVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSL 790 (840)
Q Consensus 711 ~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 790 (840)
+.+++. +.++......|.++++|+.++|..| ++..-+.+|.++ +|+.+++++|.+....+..|..+
T Consensus 303 -----------~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 303 -----------ARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp -----------CEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred -----------CeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 888888 4577666777888899999999655 665667888888 89999999998876566667777
Q ss_pred C-CCCeEeccCCcc
Q 003200 791 T-FLNHLNLSNNNL 803 (840)
Q Consensus 791 ~-~L~~L~ls~N~l 803 (840)
+ .++.+++..+.+
T Consensus 369 ~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 369 PDDITVIRVPAESV 382 (401)
T ss_dssp CTTCCEEEECGGGH
T ss_pred CCCccEEEeCHHHH
Confidence 4 678888777654
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=2e-13 Score=128.82 Aligned_cols=109 Identities=19% Similarity=0.211 Sum_probs=81.4
Q ss_pred cceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccc
Q 003200 678 LQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTG 757 (840)
Q Consensus 678 L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 757 (840)
.+.+++++|.++ .+|..+. +.+ +.|+|++|+|++..|..|.++++|++|+|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l-------------------~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 68 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTT-------------------QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTC-------------------SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCC-------------------cEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc
Confidence 467777777776 5665442 333 778888888887777778888888888888888886
Q ss_pred cCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccCC
Q 003200 758 RIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIP 808 (840)
Q Consensus 758 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 808 (840)
..|..|..+++|++|+|++|++++..|..+..+++|++|++++|++++..+
T Consensus 69 l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred cChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 666667788888888888888886666667888888888888888876554
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.45 E-value=3.3e-12 Score=137.91 Aligned_cols=266 Identities=14% Similarity=0.127 Sum_probs=168.9
Q ss_pred CCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEE
Q 003200 105 LKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHL 184 (840)
Q Consensus 105 l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L 184 (840)
+..++.+.+..+ ++.+ -...+..+ +|+.+.+..+ ++.+-..+|.++ +|+.+++.. .+..+...+|.++++|+.+
T Consensus 112 ~~~l~~i~ip~~-i~~I-~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSI-PKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTT-CCEE-CTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCc-cCEe-hHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 366677777653 4422 12344444 6888887765 555556677764 688888875 5666677778888888888
Q ss_pred EccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcEE
Q 003200 185 DLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECL 264 (840)
Q Consensus 185 ~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 264 (840)
++++|+++.++..... +.+|+.+.+..+ +..+.. ..|..+++|+.+++..+ +......+|.+ .+|+.+
T Consensus 186 ~l~~n~l~~I~~~aF~---~~~L~~l~lp~~-l~~I~~------~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i 253 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV---YAGIEEVLLPVT-LKEIGS------QAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTV 253 (401)
T ss_dssp ECTTSCCSEECTTTTT---TCCCSEEECCTT-CCEECT------TTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEE
T ss_pred ecCCCcceEechhhEe---ecccCEEEeCCc-hheehh------hHhhCCCCCCEEecCCC-ccCcccccccc-CCccEE
Confidence 8887777766543332 467777777643 555554 56777777777777654 34334445555 567777
Q ss_pred EcccCccccccchhhhcCCCCcEEecccccCcc-----ccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCC
Q 003200 265 NLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQ-----GRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGL 339 (840)
Q Consensus 265 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L 339 (840)
.+. +.++.....+|.++++|+.+++.++ ... ...+..|.++++|
T Consensus 254 ~lp-~~i~~I~~~aF~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~L----------------------------- 302 (401)
T 4fdw_A 254 KLP-NGVTNIASRAFYYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPKL----------------------------- 302 (401)
T ss_dssp EEE-TTCCEECTTTTTTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTTC-----------------------------
T ss_pred EeC-CCccEEChhHhhCCCCCCEEEeCCc-cccCCcccEECHHHhhCCccC-----------------------------
Confidence 773 3444444566677777777776652 221 1223334444444
Q ss_pred CEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCC-CCCEEEcc
Q 003200 340 ESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLT-KLSWFRVG 418 (840)
Q Consensus 340 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~-~L~~L~L~ 418 (840)
+.+.+. +.+......+|..+++|+.+.+..+ ++.+...+|.++ +|+.+++.+|... .++...|.+++ .++.+.+.
T Consensus 303 ~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 303 ARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp CEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEEC
T ss_pred CeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEEeC
Confidence 444444 2344445567788888888888655 666667788888 8888888888776 55566777774 67888887
Q ss_pred Ccccc
Q 003200 419 GNQLT 423 (840)
Q Consensus 419 ~n~l~ 423 (840)
.+.+.
T Consensus 379 ~~~~~ 383 (401)
T 4fdw_A 379 AESVE 383 (401)
T ss_dssp GGGHH
T ss_pred HHHHH
Confidence 76544
No 140
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.43 E-value=5.4e-12 Score=137.08 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=45.4
Q ss_pred ccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccC
Q 003200 351 GHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGG 419 (840)
Q Consensus 351 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~ 419 (840)
.....+|..+.+|+++.+..+ ++.+...+|.+|++|+.+++..+ +. .++...|.++++|+.+.+..
T Consensus 61 sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp EECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCT
T ss_pred EhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccC
Confidence 334456777788888888643 65566667888888888888655 33 56666788888777766543
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=6e-13 Score=125.94 Aligned_cols=107 Identities=21% Similarity=0.255 Sum_probs=71.3
Q ss_pred ceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCccccc
Q 003200 679 QILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGR 758 (840)
Q Consensus 679 ~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 758 (840)
+.+++++|.+. .+|..+. +.+ +.|+|++|++++..|..|.++++|+.|+|++|++++.
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L-------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i 72 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDK-------------------QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI 72 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTC-------------------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred cEEEeCCCCCC-ccCCCcC--CCC-------------------cEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc
Confidence 56666776665 5555443 333 6677777777766666777777777777777777755
Q ss_pred CCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccC
Q 003200 759 IPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKI 807 (840)
Q Consensus 759 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i 807 (840)
.+..|..+++|++|+|++|++++..+..+..+++|++|++++|++....
T Consensus 73 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 73 PTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 5555677777777777777777544445777777777777777776543
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.41 E-value=8.4e-12 Score=135.59 Aligned_cols=312 Identities=14% Similarity=0.074 Sum_probs=159.4
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCC
Q 003200 100 PALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLS 179 (840)
Q Consensus 100 ~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~ 179 (840)
.+|.++++|+.+++..+ ++.+ -...+..+++|+.+++.++ ++.+-..+|.++.+|+.+.+..+ +......+|.++.
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I-~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREI-GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEE-CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHhhCCCCceEEEeCCC-ccCc-chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 45777888888888643 5532 1345677888888888654 44444567778888887776543 4444555666655
Q ss_pred CCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCC
Q 003200 180 FLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFS 259 (840)
Q Consensus 180 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 259 (840)
.++..........+ ..++.++++|+.+.+..+ +..+.. ..|..+.+|+.+++..+ +.......|.++.
T Consensus 141 ~~~~~~~~~~~~i~----~~aF~~c~~L~~i~l~~~-~~~I~~------~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~ 208 (394)
T 4fs7_A 141 FKEITIPEGVTVIG----DEAFATCESLEYVSLPDS-METLHN------GLFSGCGKLKSIKLPRN-LKIIRDYCFAECI 208 (394)
T ss_dssp CSEEECCTTCCEEC----TTTTTTCTTCCEEECCTT-CCEECT------TTTTTCTTCCBCCCCTT-CCEECTTTTTTCT
T ss_pred ccccccCccccccc----hhhhcccCCCcEEecCCc-cceecc------ccccCCCCceEEEcCCC-ceEeCchhhcccc
Confidence 44333322221111 134555666666666543 222322 44566666666666544 3323334455555
Q ss_pred CCcEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCC
Q 003200 260 PLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGL 339 (840)
Q Consensus 260 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L 339 (840)
.|+.+.+..+... +.........|+.+.+... ....-...+..+..++.+.+..+..
T Consensus 209 ~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~------------------- 265 (394)
T 4fs7_A 209 LLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKL------------------- 265 (394)
T ss_dssp TCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTC-------------------
T ss_pred ccceeecCCCceE--eehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCCcc-------------------
Confidence 6665555443221 2222333445555555431 1222223344445555554443211
Q ss_pred CEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccC
Q 003200 340 ESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGG 419 (840)
Q Consensus 340 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~ 419 (840)
......|..+..++.+......+. ...|..+.+|+.+.+..+ +. .|+..+|.++++|+.+++..
T Consensus 266 -----------~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~ 329 (394)
T 4fs7_A 266 -----------RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPY 329 (394)
T ss_dssp -----------EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCT
T ss_pred -----------eeeccccccccccceeccCceeec---cccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCC
Confidence 122334445555555555443322 224555555555555443 22 44444555555555555543
Q ss_pred cccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCC
Q 003200 420 NQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNS 468 (840)
Q Consensus 420 n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n 468 (840)
+ ++.....+|..+.+|+.+.+..+ +......+|.+|++|+.+++..+
T Consensus 330 ~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 330 L-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred c-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 2 44444555555555666655544 33444556667777777776543
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=2.5e-12 Score=121.26 Aligned_cols=106 Identities=17% Similarity=0.216 Sum_probs=69.1
Q ss_pred cEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCccccc
Q 003200 655 LVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGE 734 (840)
Q Consensus 655 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 734 (840)
+.+++++|.++. +|..+ .++|+.|++++|++++..|..+..+++| ++|+|++|+|++.
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L-------------------~~L~Ls~N~l~~l 69 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQL-------------------TRLDLDNNQLTVL 69 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTC-------------------SEEECCSSCCCCC
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccC-------------------CEEECCCCCcCcc
Confidence 345555555543 33333 2556666666666665556666665555 6677777777755
Q ss_pred CcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCccccc
Q 003200 735 ILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGE 782 (840)
Q Consensus 735 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 782 (840)
.+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++...
T Consensus 70 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 70 PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 555567777777777777777766666677777788888888877644
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=4e-14 Score=151.41 Aligned_cols=158 Identities=19% Similarity=0.200 Sum_probs=80.0
Q ss_pred CCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccc-----cCccccceeeccccccccc----CCccccc
Q 003200 628 ALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTI-----CDLAFLQILDLADNNLSGA----IPKCISN 698 (840)
Q Consensus 628 ~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~----~p~~~~~ 698 (840)
+|++|++++|.+.......+...+++|+.|++++|.++......+ ...++|++|+|++|.++.. ++..+..
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~ 181 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG 181 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence 444444444444332222333333444555555554433222222 1345566677777666532 1222222
Q ss_pred cccCcccccccCcccccccCCcceEEeCCCCccccc----CcccccCCCCCCeEeCCCCccccc----CCcchhccCCCC
Q 003200 699 LTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGE----ILSEVTNLKALQSINFSFNTFTGR----IPESIGTMRALE 770 (840)
Q Consensus 699 l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~ 770 (840)
.+ .|++|||++|.+++. ++..+...++|++|+|++|.++.. ++..+...++|+
T Consensus 182 ~~-------------------~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~ 242 (372)
T 3un9_A 182 NT-------------------SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLE 242 (372)
T ss_dssp CS-------------------SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCC
T ss_pred CC-------------------CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCC
Confidence 33 336777777777643 244556667777888888877653 334455567788
Q ss_pred eEeCCCCcccccCCccccCCCC-----CCeEe--ccCCccc
Q 003200 771 SVDFSVNQLSGEIPQSMSSLTF-----LNHLN--LSNNNLT 804 (840)
Q Consensus 771 ~L~Ls~N~l~~~~p~~l~~l~~-----L~~L~--ls~N~l~ 804 (840)
+|||++|+++..-...+..+.. |+.+. +..|.++
T Consensus 243 ~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 243 LLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp EEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred EEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 8888888777554444443321 55555 5555443
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=5.3e-12 Score=119.40 Aligned_cols=104 Identities=14% Similarity=0.182 Sum_probs=65.4
Q ss_pred EEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccC
Q 003200 656 VLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEI 735 (840)
Q Consensus 656 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 735 (840)
.+++++|++. .+|..+. ++|+.|++++|++++..|..+.++++| +.|+|++|+|++..
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------------~~L~Ls~N~l~~i~ 73 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNL-------------------QQLYFNSNKLTAIP 73 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC-------------------CEEECCSSCCCCCC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCC-------------------CEEECCCCCCCccC
Confidence 4444555443 3333332 556666666666665556666665555 66777777766544
Q ss_pred cccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccc
Q 003200 736 LSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSG 781 (840)
Q Consensus 736 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 781 (840)
+..|.++++|++|+|++|++++..+..|..+++|++|+|++|++..
T Consensus 74 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 74 TGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred hhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 4456677777777777777775555557777777777777777763
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=5e-13 Score=142.90 Aligned_cols=166 Identities=14% Similarity=0.133 Sum_probs=123.0
Q ss_pred CCCCcEEeCCCCcccccCChhhhh----ccCCccEEEccCCcccccCCccc-cCccccceeecccccccccCCccccccc
Q 003200 626 CTALASLDVDENEFVGNIPTWFGE----RFSRMLVLILRSNQFHGPLPKTI-CDLAFLQILDLADNNLSGAIPKCISNLT 700 (840)
Q Consensus 626 l~~L~~L~ls~N~l~~~~p~~~~~----~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 700 (840)
++.|+.|++++|.++......+.. ..++|+.|++++|.++......+ ..+++|+.|+|++|.++......+...-
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 367888999998887554444442 23689999999999975433333 3467899999999999754443332210
Q ss_pred cCcccccccCcccccccCCcceEEeCCCCccccc----CcccccCCCCCCeEeCCCCccccc----CCcchhccCCCCeE
Q 003200 701 GMVTVKSFTGSVVYREILPLVSLLDISRNNFSGE----ILSEVTNLKALQSINFSFNTFTGR----IPESIGTMRALESV 772 (840)
Q Consensus 701 ~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L 772 (840)
....+.|+.|+|++|.++.. ++..+..+++|++|+|++|.++.. ++..+...++|++|
T Consensus 151 --------------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L 216 (372)
T 3un9_A 151 --------------LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQEL 216 (372)
T ss_dssp --------------HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEE
T ss_pred --------------HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeE
Confidence 01134569999999999753 445567889999999999999864 35677888999999
Q ss_pred eCCCCccccc----CCccccCCCCCCeEeccCCcccc
Q 003200 773 DFSVNQLSGE----IPQSMSSLTFLNHLNLSNNNLTG 805 (840)
Q Consensus 773 ~Ls~N~l~~~----~p~~l~~l~~L~~L~ls~N~l~g 805 (840)
||++|.++.. ++..+...++|++|++++|++++
T Consensus 217 ~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 217 NVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp ECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred ECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 9999999863 44556677999999999999865
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=4.2e-11 Score=127.84 Aligned_cols=82 Identities=21% Similarity=0.251 Sum_probs=42.0
Q ss_pred eEEeCCC-CcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccC
Q 003200 722 SLLDISR-NNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSN 800 (840)
Q Consensus 722 ~~L~Ls~-N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 800 (840)
+.|+|++ |+|++..+..|+++++|+.|+|++|+|++..|..|+++++|++|||++|+|++..|..+..++ |+.|++++
T Consensus 34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG 112 (347)
T ss_dssp SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence 4555553 555544444555555555555555555555555555555555555555555533333333333 55555555
Q ss_pred Cccc
Q 003200 801 NNLT 804 (840)
Q Consensus 801 N~l~ 804 (840)
|++.
T Consensus 113 N~~~ 116 (347)
T 2ifg_A 113 NPLH 116 (347)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 5543
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.20 E-value=8.8e-10 Score=119.56 Aligned_cols=108 Identities=14% Similarity=0.163 Sum_probs=48.4
Q ss_pred ccCCCC-CCCEEEccCCcccccccccccCCCCCCEEEccCCc---cccccChhhhccCCCCCEEEccCcccceeccCCCC
Q 003200 356 QLGQFR-NLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNK---LNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWI 431 (840)
Q Consensus 356 ~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~---l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 431 (840)
+|.+++ .|+++.+-++ ++.+...+|.+|++|+.+.+..|. ++ .|...+|.++.+|+.+.+..+ ++......|.
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhh
Confidence 344442 3555555432 333444455555555555554432 22 344445555555554444322 2333333444
Q ss_pred CccCccEEecccccCCCCCCccccCCCCCcEEEccC
Q 003200 432 PPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLN 467 (840)
Q Consensus 432 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~ 467 (840)
.+.+|+.+.+... +.......|..+..|+.+.+.+
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCT
T ss_pred hhcccccccccce-eeeecccceecccccccccccc
Confidence 4444444444322 1122233455555565555543
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.14 E-value=4.3e-09 Score=114.09 Aligned_cols=304 Identities=11% Similarity=0.088 Sum_probs=146.2
Q ss_pred ccCCC-CCcEEeccCCcccCCCCCCCCCCCCCCeEeccCcc---ccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcC
Q 003200 127 IGSMR-NLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNY---LYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATN 202 (840)
Q Consensus 127 l~~l~-~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~---~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 202 (840)
+..++ .|+.+.+..+ ++.+-..+|.++++|+.+.+..+. ++.+...+|.++.+|+.+.+..+ ++.+. ..++.
T Consensus 59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~--~~aF~ 134 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID--SEAFH 134 (394)
T ss_dssp TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC--TTTTT
T ss_pred ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh--hhhhh
Confidence 44443 4777777654 554556778888888888887653 55566667777777777666543 22221 12344
Q ss_pred CCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccCccccccchhhhcC
Q 003200 203 TLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNL 282 (840)
Q Consensus 203 ~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 282 (840)
.+.+|+.+.+..+ +..+.. ..+..+.+|+.+.+..+ +.......|. ...|+.+.+..+... ....++..+
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~------~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c 204 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVAD------GMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSEC 204 (394)
T ss_dssp TCTTCCEEECCTT-CCEECT------TTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTC
T ss_pred hhcccccccccce-eeeecc------cceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhc
Confidence 5556666665432 222222 44555555665555443 2212222232 234555555433211 233344445
Q ss_pred CCCcEEecccccCccccCccccc-CCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCC
Q 003200 283 TSVSWLDLSINIGLQGRIPRSMA-NFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFR 361 (840)
Q Consensus 283 ~~L~~L~L~~n~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 361 (840)
..++....... ... .+...+. ........... + .....+..+.+.. .+......+|..+.
T Consensus 205 ~~l~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~--------------~--~~~~~~~~~~ip~-~v~~i~~~aF~~c~ 265 (394)
T 4gt6_A 205 FALSTITSDSE-SYP-AIDNVLYEKSANGDYALIR--------------Y--PSQREDPAFKIPN-GVARIETHAFDSCA 265 (394)
T ss_dssp TTCCEEEECCS-SSC-BSSSCEEEECTTSCEEEEE--------------C--CTTCCCSEEECCT-TEEEECTTTTTTCS
T ss_pred cccceeccccc-ccc-cccceeecccccccccccc--------------c--ccccccceEEcCC-cceEcccceeeecc
Confidence 55544444331 100 0000000 00000000000 0 0001233333321 22233344566677
Q ss_pred CCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEec
Q 003200 362 NLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGL 441 (840)
Q Consensus 362 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 441 (840)
.|+.+.+.++.. .+...+|.++++|+.+.+.. .+. .++...|.++.+|+.+.+..+ ++......|..+.+|+.+.+
T Consensus 266 ~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 266 YLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp SCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred cccEEecccccc-eecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence 777777765433 24445667777777777753 233 566667777777777776543 44444445555555555555
Q ss_pred ccccCCCCCCccccCCCCCcEEEccCC
Q 003200 442 HNCYVGSRFPQWLHSQKHLQYLNLLNS 468 (840)
Q Consensus 442 ~~~~~~~~~~~~l~~l~~L~~L~Ls~n 468 (840)
..+ +......+|.+|++|+.+++.++
T Consensus 342 p~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 342 PSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred Ccc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 332 33333444555555555554443
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.13 E-value=1.3e-10 Score=124.04 Aligned_cols=110 Identities=22% Similarity=0.201 Sum_probs=90.0
Q ss_pred ccccceecCCCCCCEEEEEcCCCCCCCCCccccccccccccCCCCCCEEeCCC-CCCCCCCccccccCCCCCcEEeccCC
Q 003200 63 CTWAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSS-NDFQGVQIPRFIGSMRNLRYLNLSDT 141 (840)
Q Consensus 63 c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~~~~~~~p~~l~~l~~L~~L~Ls~n 141 (840)
|.|.+|.|.+. .-...+|. +..+++|++|+|++ |.+.++ .+..|+.+++|++|+|++|
T Consensus 8 C~~~~v~~~~~-------------------n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N 66 (347)
T 2ifg_A 8 HGSSGLRCTRD-------------------GALDSLHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKS 66 (347)
T ss_dssp SSSSCEECCSS-------------------CCCTTTTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSS
T ss_pred ccCCEEEcCCC-------------------CCCCccCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCC
Confidence 88888888531 01234777 88999999999996 999864 4567889999999999999
Q ss_pred cccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCC
Q 003200 142 QFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKA 194 (840)
Q Consensus 142 ~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 194 (840)
++++..|..|.++++|++|+|++|++.......|..++ |++|+|.+|.+...
T Consensus 67 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 67 GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred ccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 99998888999999999999999999887777777776 88888888887653
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=1.1e-09 Score=115.71 Aligned_cols=83 Identities=17% Similarity=0.327 Sum_probs=49.6
Q ss_pred CCcceEEeCCCCcccccCccccc---CCCCCCeEeCCCCccccc----CCcchhccCCCCeEeCCCCcccccCCccccC-
Q 003200 718 LPLVSLLDISRNNFSGEILSEVT---NLKALQSINFSFNTFTGR----IPESIGTMRALESVDFSVNQLSGEIPQSMSS- 789 (840)
Q Consensus 718 ~~~L~~L~Ls~N~l~~~~~~~l~---~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~- 789 (840)
+|.|+.|+|++|.+.+..+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++...-+.+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 45556677766666543333332 456777777777777653 3444456677777777777776543333433
Q ss_pred CCCCCeEeccCCc
Q 003200 790 LTFLNHLNLSNNN 802 (840)
Q Consensus 790 l~~L~~L~ls~N~ 802 (840)
+ ...++++.++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3557777765
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.84 E-value=1.5e-09 Score=114.84 Aligned_cols=203 Identities=18% Similarity=0.229 Sum_probs=126.9
Q ss_pred CcccEEeccCCcCcc-c-------cCccccCCCCcCEEEccCCcCC---------CCCCcccCCCCcccEEEccCCcCcC
Q 003200 555 KSLEGLKLTDNYLQG-E-------IPDCWMSYQNLKVLKLSNNKFS---------GNLPNSLGSITSLVWLYLRKNRLSG 617 (840)
Q Consensus 555 ~~L~~L~Ls~n~l~~-~-------~~~~~~~l~~L~~L~Ls~n~l~---------~~~~~~l~~l~~L~~L~L~~n~l~~ 617 (840)
..++.|.+......+ . +..+...+++|+.|.+..+... +.+...+..+++|+.|+|++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 457788887665442 1 1233456789999998765431 113334566788999999887311
Q ss_pred CCCcccccCCCCcEEeCCCCcccccCChhhhh-ccCCccEEEccC--Cccccc-----CCccc--cCccccceeeccccc
Q 003200 618 KIPISLKNCTALASLDVDENEFVGNIPTWFGE-RFSRMLVLILRS--NQFHGP-----LPKTI--CDLAFLQILDLADNN 687 (840)
Q Consensus 618 ~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~-~l~~L~~L~l~~--n~l~~~-----~p~~l--~~l~~L~~L~Ls~N~ 687 (840)
.++. +. +++|+.|++..|.+.......+.. .+++|+.|+|+. |...+. +...+ ..+++|+.|++++|.
T Consensus 186 ~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 2333 33 788999999888776444444432 578899888853 221111 11122 247889999998888
Q ss_pred ccccCCccccccccCcccccccCcccccccCCcceEEeCCCCccccc----CcccccCCCCCCeEeCCCCcccccCCcch
Q 003200 688 LSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGE----ILSEVTNLKALQSINFSFNTFTGRIPESI 763 (840)
Q Consensus 688 l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l 763 (840)
+.+..+..+.... .+|.|+.|+|+.|.+++. ++..+..+++|+.|+|++|.++...-..+
T Consensus 264 i~~~~~~~la~a~----------------~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l 327 (362)
T 2ra8_A 264 EQNVVVEMFLESD----------------ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327 (362)
T ss_dssp THHHHHHHHHHCS----------------SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHH
T ss_pred CchHHHHHHHhCc----------------cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHH
Confidence 8754433332211 245668899999988764 34445667889999999998875544444
Q ss_pred hc-cCCCCeEeCCCCc
Q 003200 764 GT-MRALESVDFSVNQ 778 (840)
Q Consensus 764 ~~-l~~L~~L~Ls~N~ 778 (840)
.. + ...+|++.++
T Consensus 328 ~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 328 QKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHC--CSEEECCSBC
T ss_pred HHHc--CCEEEecCCc
Confidence 43 2 3668888887
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.83 E-value=2.7e-07 Score=99.44 Aligned_cols=82 Identities=9% Similarity=0.081 Sum_probs=50.5
Q ss_pred cccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCcc
Q 003200 355 DQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPF 434 (840)
Q Consensus 355 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 434 (840)
.|+....+|+++.+... ++.+...+|.+|.+|+.+.+..+ ++ .|...+|.++ +|+.+.+..+ +.......|.. .
T Consensus 40 ~~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~ 113 (379)
T 4h09_A 40 PWYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-T 113 (379)
T ss_dssp TTGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-C
T ss_pred cccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceecc-C
Confidence 34555677888888653 66566678888888888888654 44 6777778776 5666665432 33333333322 2
Q ss_pred CccEEecc
Q 003200 435 QLVALGLH 442 (840)
Q Consensus 435 ~L~~L~l~ 442 (840)
+|+.+.+.
T Consensus 114 ~L~~i~lp 121 (379)
T 4h09_A 114 DLDDFEFP 121 (379)
T ss_dssp CCSEEECC
T ss_pred CcccccCC
Confidence 45555444
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.78 E-value=6.3e-07 Score=96.51 Aligned_cols=118 Identities=13% Similarity=0.143 Sum_probs=59.0
Q ss_pred ccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccC
Q 003200 356 QLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQ 435 (840)
Q Consensus 356 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 435 (840)
.+..+..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +. .++...|.++++|+.+.+.++.++......|..+.+
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCC
Confidence 3444555555555443 33333444555555555555433 22 344445555555555555555555555555555555
Q ss_pred ccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHH
Q 003200 436 LVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRF 478 (840)
Q Consensus 436 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 478 (840)
|+.+.+..+ +......+|.+|.+|+.+.+..+ ++.+....|
T Consensus 312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF 352 (379)
T 4h09_A 312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAF 352 (379)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHh
Confidence 555555432 33334455666666666666443 443333333
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.44 E-value=6e-08 Score=92.35 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=46.5
Q ss_pred eEEeCCCCccccc----CcccccCCCCCCeEeCCCCccccc----CCcchhccCCCCeEeC--CCCccccc----CCccc
Q 003200 722 SLLDISRNNFSGE----ILSEVTNLKALQSINFSFNTFTGR----IPESIGTMRALESVDF--SVNQLSGE----IPQSM 787 (840)
Q Consensus 722 ~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L--s~N~l~~~----~p~~l 787 (840)
++|+|++|.+... +...+...+.|++|+|++|.+... +...+...++|++|+| ++|.+... +.+.+
T Consensus 68 ~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L 147 (185)
T 1io0_A 68 KKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANML 147 (185)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH
T ss_pred CEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHH
Confidence 5566666655432 223334445666666666666543 3445555566666666 66666543 23334
Q ss_pred cCCCCCCeEeccCCccc
Q 003200 788 SSLTFLNHLNLSNNNLT 804 (840)
Q Consensus 788 ~~l~~L~~L~ls~N~l~ 804 (840)
...+.|++|++++|.+.
T Consensus 148 ~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 148 EKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHCSSCCEEECCCSSHH
T ss_pred HhCCCcCEEeccCCCCC
Confidence 44566777777776653
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.40 E-value=5.1e-08 Score=92.83 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=40.3
Q ss_pred cCCCCcCEEEccCCcCCCCC----CcccCCCCcccEEEccCCcCcCC----CCcccccCCCCcEEeC--CCCcccccCCh
Q 003200 576 MSYQNLKVLKLSNNKFSGNL----PNSLGSITSLVWLYLRKNRLSGK----IPISLKNCTALASLDV--DENEFVGNIPT 645 (840)
Q Consensus 576 ~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l--s~N~l~~~~p~ 645 (840)
...++|++|+|++|.+.... ...+...++|++|+|++|.|... +...+...++|++|++ ++|.+...-..
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 33444555555555444211 11223334455555555555422 2334444555555555 55555433221
Q ss_pred hhh---hccCCccEEEccCCccc
Q 003200 646 WFG---ERFSRMLVLILRSNQFH 665 (840)
Q Consensus 646 ~~~---~~l~~L~~L~l~~n~l~ 665 (840)
.+. ...++|++|++++|.+.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCcCEEeccCCCCC
Confidence 111 12355666666666553
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.38 E-value=7.9e-08 Score=96.02 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=44.3
Q ss_pred CCcceEEeCCCCcccc--cCcccccCCCCCCeEeCCCCcccccCCcchhccC--CCCeEeCCCCcccccCCc-------c
Q 003200 718 LPLVSLLDISRNNFSG--EILSEVTNLKALQSINFSFNTFTGRIPESIGTMR--ALESVDFSVNQLSGEIPQ-------S 786 (840)
Q Consensus 718 ~~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p~-------~ 786 (840)
+|.|+.|+|++|+|++ .+|..+..+++|+.|+|++|++++. ..+..+. +|++|+|++|++.+.+|. .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3444666666666665 3345555666666666666666643 2233333 666666666666655542 2
Q ss_pred ccCCCCCCeEe
Q 003200 787 MSSLTFLNHLN 797 (840)
Q Consensus 787 l~~l~~L~~L~ 797 (840)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 44556666554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.31 E-value=2.6e-07 Score=92.29 Aligned_cols=84 Identities=23% Similarity=0.275 Sum_probs=67.1
Q ss_pred EeCCCCccc---ccCcccccCCCCCCeEeCCCCcccc--cCCcchhccCCCCeEeCCCCcccccCCccccCCC--CCCeE
Q 003200 724 LDISRNNFS---GEILSEVTNLKALQSINFSFNTFTG--RIPESIGTMRALESVDFSVNQLSGEIPQSMSSLT--FLNHL 796 (840)
Q Consensus 724 L~Ls~N~l~---~~~~~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L 796 (840)
++++.|+.. +.++....+++.|++|+|++|++++ .+|..+..+++|+.|+|++|++++. +.+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 677888543 2222233678999999999999998 5667888999999999999999965 3455555 99999
Q ss_pred eccCCcccccCCC
Q 003200 797 NLSNNNLTGKIPL 809 (840)
Q Consensus 797 ~ls~N~l~g~ip~ 809 (840)
++++|++++.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999998884
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.90 E-value=5.5e-06 Score=76.40 Aligned_cols=86 Identities=14% Similarity=0.103 Sum_probs=61.1
Q ss_pred CCCCEEECcCCCCCCCCcccccCCCCCcEEEcccCc-cccccchhhhcC----CCCcEEecccccCccccCcccccCCCC
Q 003200 235 TSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNS-LQGTISDAIGNL----TSVSWLDLSINIGLQGRIPRSMANFCN 309 (840)
Q Consensus 235 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~~~~~~~~~~l~~l~~ 309 (840)
.+|++||++++.++...-..+.++++|++|+|++|. +++.--..+..+ ++|++|++++|..+++.--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467778888777766555566778888888888874 665544555554 468888888876677666666777888
Q ss_pred CcEEEcCCCcc
Q 003200 310 LKSVNLRGVHL 320 (840)
Q Consensus 310 L~~L~l~~~~~ 320 (840)
|++|++++|.-
T Consensus 141 L~~L~L~~c~~ 151 (176)
T 3e4g_A 141 LKYLFLSDLPG 151 (176)
T ss_dssp CCEEEEESCTT
T ss_pred CCEEECCCCCC
Confidence 88888887753
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.86 E-value=4e-06 Score=77.27 Aligned_cols=83 Identities=10% Similarity=0.115 Sum_probs=69.3
Q ss_pred cceEEeCCCCcccccCcccccCCCCCCeEeCCCCc-ccccCCcchhcc----CCCCeEeCCCCc-ccccCCccccCCCCC
Q 003200 720 LVSLLDISRNNFSGEILSEVTNLKALQSINFSFNT-FTGRIPESIGTM----RALESVDFSVNQ-LSGEIPQSMSSLTFL 793 (840)
Q Consensus 720 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~L 793 (840)
.|+.||+|++.++..-...+..+++|+.|+|++|. ++..--..++.+ ++|++|+|++|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 46999999999998777888999999999999996 776555556664 479999999985 776544568889999
Q ss_pred CeEeccCCc
Q 003200 794 NHLNLSNNN 802 (840)
Q Consensus 794 ~~L~ls~N~ 802 (840)
++|++++++
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999986
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.38 E-value=4.2e-05 Score=71.92 Aligned_cols=87 Identities=17% Similarity=0.173 Sum_probs=44.9
Q ss_pred CCCcEEEccCC-cCcccCCchhhhccCCCCcccEEeccCCcCccc----cCccccCCCCcCEEEccCCcCCCCC----Cc
Q 003200 527 SNLVYLDFSNN-SFSGSISHFLCYRVNETKSLEGLKLTDNYLQGE----IPDCWMSYQNLKVLKLSNNKFSGNL----PN 597 (840)
Q Consensus 527 ~~L~~L~l~~n-~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~----~~ 597 (840)
+.|+.|++++| .+.......++..+..-+.|+.|+|++|.+... +.+++..-+.|++|+|++|.|.... .+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 34555666553 555444455555555556666666666666532 2223334455666666666665321 12
Q ss_pred ccCCCCcccEEEccCC
Q 003200 598 SLGSITSLVWLYLRKN 613 (840)
Q Consensus 598 ~l~~l~~L~~L~L~~n 613 (840)
.+..-+.|++|+|++|
T Consensus 121 aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTTTCCCSEEECCCC
T ss_pred HHhhCCceeEEECCCC
Confidence 2333344555555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.91 E-value=0.00028 Score=66.34 Aligned_cols=70 Identities=13% Similarity=0.150 Sum_probs=32.7
Q ss_pred hhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCC----CcccccCCCCCcEEEccc
Q 003200 197 WLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSS----IPDWLYKFSPLECLNLRN 268 (840)
Q Consensus 197 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~ 268 (840)
+...+...+.|++|+|++|.+.+... ..+.+.+..-+.|++|+|++|.|... +.+.+..-+.|++|+|++
T Consensus 62 la~aL~~N~~L~~L~L~~n~igd~ga--~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 62 LIEAACNSKHIEKFSLANTAISDSEA--RGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHTTCSCCCEEECTTSCCBHHHH--TTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCCcCEEEccCCCCChHHH--HHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 33444455555555555555543321 11223333445566666666655532 122333344455555554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.67 E-value=0.0024 Score=55.97 Aligned_cols=57 Identities=16% Similarity=0.279 Sum_probs=42.2
Q ss_pred eEEeCCCCccc-ccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCccc
Q 003200 722 SLLDISRNNFS-GEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLS 780 (840)
Q Consensus 722 ~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 780 (840)
..++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 57888888886 45665543 36788888888888666667778888888888888774
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.59 E-value=0.003 Score=55.36 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=43.3
Q ss_pred CeEeCCCCccc-ccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCccc
Q 003200 746 QSINFSFNTFT-GRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLT 804 (840)
Q Consensus 746 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 804 (840)
..++.+++.++ ..+|..+. ++|++|||++|+|+..-+..|..+++|++|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 37888888886 45675443 47888999999988555566788888999999988763
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=42.46 E-value=28 Score=28.03 Aligned_cols=45 Identities=13% Similarity=0.097 Sum_probs=23.8
Q ss_pred CccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccC
Q 003200 567 LQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRK 612 (840)
Q Consensus 567 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 612 (840)
++.+-..+|.+|.+|+.+.|..+ ++.+...+|.+|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33344455666666666666543 3334445555555665555544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=40.74 E-value=46 Score=26.76 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=19.4
Q ss_pred ccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccC
Q 003200 377 IPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGG 419 (840)
Q Consensus 377 ~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~ 419 (840)
-..+|.+|.+|+.+.+-.+ ++ .|....|.++.+|+.+.+.+
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECC
T ss_pred cHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcC
Confidence 3344555555555555443 11 34444555555555555443
Done!