Query 003201
Match_columns 840
No_of_seqs 325 out of 1364
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 18:59:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00429 beta-adaptin; Provisi 100.0 5E-115 1E-119 1028.2 63.5 582 9-612 21-608 (746)
2 KOG1061 Vesicle coat complex A 100.0 4E-115 8E-120 987.1 47.0 584 11-612 4-588 (734)
3 KOG1060 Vesicle coat complex A 100.0 3.4E-87 7.3E-92 749.4 38.9 542 21-599 36-615 (968)
4 KOG1077 Vesicle coat complex A 100.0 3E-77 6.5E-82 661.6 54.0 544 20-588 35-619 (938)
5 PF01602 Adaptin_N: Adaptin N 100.0 1.2E-77 2.6E-82 704.0 38.1 495 40-552 19-524 (526)
6 KOG1062 Vesicle coat complex A 100.0 2.8E-73 6.1E-78 641.9 42.7 528 19-570 31-598 (866)
7 COG5096 Vesicle coat complex, 100.0 4E-69 8.8E-74 623.5 39.6 560 21-604 19-624 (757)
8 KOG1059 Vesicle coat complex A 100.0 2.4E-60 5.2E-65 529.7 36.3 508 21-551 37-576 (877)
9 KOG1058 Vesicle coat complex C 100.0 1.9E-46 4.2E-51 419.7 31.0 429 22-483 22-469 (948)
10 KOG1078 Vesicle coat complex C 100.0 7.9E-38 1.7E-42 353.7 37.8 495 22-551 24-531 (865)
11 COG5240 SEC21 Vesicle coat com 100.0 1.9E-34 4.1E-39 315.1 36.4 508 19-552 21-555 (898)
12 PF09066 B2-adapt-app_C: Beta2 99.9 1.5E-24 3.2E-29 203.0 11.9 114 721-836 1-114 (114)
13 PF01602 Adaptin_N: Adaptin N 99.4 6.1E-11 1.3E-15 139.6 23.1 129 72-206 88-223 (526)
14 PLN03200 cellulose synthase-in 99.0 1.4E-06 3.1E-11 112.8 39.7 429 120-561 170-732 (2102)
15 PRK13800 putative oxidoreducta 99.0 9.3E-08 2E-12 119.5 27.3 56 103-162 624-679 (897)
16 PRK09687 putative lyase; Provi 99.0 3.7E-08 8.1E-13 106.6 19.9 240 100-419 23-262 (280)
17 PF12717 Cnd1: non-SMC mitotic 99.0 1.6E-08 3.4E-13 102.3 15.9 146 113-273 1-158 (178)
18 PTZ00429 beta-adaptin; Provisi 99.0 3.9E-06 8.5E-11 101.5 38.5 406 108-542 76-497 (746)
19 PRK13800 putative oxidoreducta 98.9 4E-07 8.6E-12 114.0 27.0 256 115-435 609-864 (897)
20 PLN03200 cellulose synthase-in 98.8 4.8E-06 1E-10 108.1 35.4 247 69-331 410-680 (2102)
21 PF10508 Proteasom_PSMB: Prote 98.8 1.2E-05 2.6E-10 94.5 36.1 393 69-512 44-463 (503)
22 PRK09687 putative lyase; Provi 98.7 1.9E-06 4E-11 93.5 23.7 218 65-326 56-277 (280)
23 KOG0166 Karyopherin (importin) 98.5 4E-05 8.7E-10 87.6 25.2 291 92-403 77-394 (514)
24 PF10508 Proteasom_PSMB: Prote 98.5 4.8E-05 1E-09 89.3 26.9 332 44-384 54-440 (503)
25 KOG0212 Uncharacterized conser 98.5 0.00037 8.1E-09 79.1 31.8 330 98-438 40-406 (675)
26 KOG2171 Karyopherin (importin) 98.4 0.00045 9.8E-09 84.4 33.3 423 105-545 9-497 (1075)
27 KOG1060 Vesicle coat complex A 98.4 0.00053 1.1E-08 80.4 31.8 404 110-548 45-490 (968)
28 KOG0213 Splicing factor 3b, su 98.3 0.00066 1.4E-08 78.9 29.2 419 42-552 650-1139(1172)
29 KOG2171 Karyopherin (importin) 98.3 0.0053 1.2E-07 75.4 37.8 512 65-599 6-601 (1075)
30 KOG2023 Nuclear transport rece 98.2 0.00041 8.9E-09 79.9 24.3 352 129-529 84-520 (885)
31 KOG1059 Vesicle coat complex A 98.1 0.0053 1.1E-07 71.8 32.4 340 57-420 102-461 (877)
32 PF14764 SPG48: AP-5 complex s 98.1 0.0073 1.6E-07 68.6 31.1 127 432-562 291-455 (459)
33 KOG0212 Uncharacterized conser 98.0 0.0061 1.3E-07 69.6 29.6 374 56-443 73-485 (675)
34 PF13646 HEAT_2: HEAT repeats; 98.0 1.6E-05 3.5E-10 70.1 7.1 86 102-199 1-87 (88)
35 KOG2023 Nuclear transport rece 97.9 0.0083 1.8E-07 69.6 29.1 445 118-586 376-882 (885)
36 KOG1058 Vesicle coat complex C 97.9 0.0014 3E-08 76.7 22.0 328 135-494 99-443 (948)
37 KOG1062 Vesicle coat complex A 97.8 0.0025 5.5E-08 75.2 23.3 315 141-475 76-453 (866)
38 KOG0166 Karyopherin (importin) 97.7 0.014 2.9E-07 67.4 26.0 259 64-330 110-392 (514)
39 KOG1020 Sister chromatid cohes 97.7 0.094 2E-06 66.3 33.6 161 76-250 793-957 (1692)
40 KOG1078 Vesicle coat complex C 97.6 0.0096 2.1E-07 70.4 23.0 177 100-334 205-386 (865)
41 KOG0213 Splicing factor 3b, su 97.6 0.2 4.2E-06 59.3 32.4 158 43-203 415-584 (1172)
42 KOG4224 Armadillo repeat prote 97.5 0.0032 6.9E-08 68.3 16.6 298 68-405 90-408 (550)
43 KOG1824 TATA-binding protein-i 97.5 0.29 6.3E-06 59.4 32.8 213 116-334 149-405 (1233)
44 KOG1241 Karyopherin (importin) 97.3 0.089 1.9E-06 62.3 25.4 337 78-421 341-731 (859)
45 TIGR02270 conserved hypothetic 97.3 0.067 1.5E-06 61.2 24.2 256 113-436 38-294 (410)
46 TIGR02270 conserved hypothetic 97.2 0.02 4.3E-07 65.4 19.6 90 101-204 87-176 (410)
47 KOG0414 Chromosome condensatio 97.2 0.0015 3.2E-08 80.0 10.7 142 62-206 918-1066(1251)
48 KOG1824 TATA-binding protein-i 97.2 0.27 5.7E-06 59.7 28.7 329 92-444 16-408 (1233)
49 PF04826 Arm_2: Armadillo-like 97.2 0.028 6.2E-07 60.1 19.3 230 138-394 15-254 (254)
50 COG5240 SEC21 Vesicle coat com 97.2 0.031 6.7E-07 64.0 20.0 285 85-399 249-552 (898)
51 KOG0414 Chromosome condensatio 97.2 0.76 1.7E-05 57.3 32.7 155 52-207 259-431 (1251)
52 COG1413 FOG: HEAT repeat [Ener 97.1 0.048 1E-06 60.6 20.9 186 64-289 44-241 (335)
53 cd00020 ARM Armadillo/beta-cat 97.1 0.0017 3.7E-08 59.8 7.4 108 136-251 8-118 (120)
54 PF05804 KAP: Kinesin-associat 97.0 0.15 3.3E-06 61.9 24.5 364 177-560 253-658 (708)
55 COG1413 FOG: HEAT repeat [Ener 97.0 0.19 4.2E-06 55.8 24.2 222 99-394 42-265 (335)
56 PF12717 Cnd1: non-SMC mitotic 96.9 0.031 6.7E-07 56.5 15.6 93 148-254 1-93 (178)
57 COG5181 HSH155 U2 snRNP splice 96.9 0.3 6.6E-06 56.7 24.3 311 57-420 435-776 (975)
58 PF12348 CLASP_N: CLASP N term 96.8 0.0051 1.1E-07 64.4 9.6 181 21-205 4-207 (228)
59 KOG1061 Vesicle coat complex A 96.8 0.16 3.5E-06 60.5 22.2 120 47-168 64-193 (734)
60 KOG2259 Uncharacterized conser 96.8 1.8 3.8E-05 51.1 29.7 343 92-444 150-517 (823)
61 KOG1242 Protein containing ada 96.8 0.53 1.1E-05 55.1 25.6 294 57-404 128-446 (569)
62 KOG1020 Sister chromatid cohes 96.7 3.2 7E-05 53.3 34.2 183 67-252 820-1006(1692)
63 cd00020 ARM Armadillo/beta-cat 96.7 0.0034 7.3E-08 57.9 6.0 102 101-203 8-119 (120)
64 PF04826 Arm_2: Armadillo-like 96.5 0.048 1E-06 58.4 14.4 148 173-331 11-163 (254)
65 PF12348 CLASP_N: CLASP N term 96.4 0.057 1.2E-06 56.5 14.1 180 145-335 17-210 (228)
66 PF05918 API5: Apoptosis inhib 96.4 2.7 5.8E-05 49.7 28.7 134 65-202 25-160 (556)
67 COG5098 Chromosome condensatio 96.4 0.021 4.6E-07 66.4 11.2 190 65-271 893-1093(1128)
68 COG5181 HSH155 U2 snRNP splice 96.4 3.1 6.7E-05 48.8 28.1 442 101-552 282-870 (975)
69 KOG2259 Uncharacterized conser 96.3 0.45 9.7E-06 55.9 20.8 318 97-429 118-466 (823)
70 PF05804 KAP: Kinesin-associat 96.1 1.2 2.6E-05 54.2 24.6 236 65-312 292-543 (708)
71 KOG1525 Sister chromatid cohes 96.1 1.1 2.3E-05 57.7 24.8 242 307-552 187-472 (1266)
72 KOG1240 Protein kinase contain 96.1 0.097 2.1E-06 64.8 14.9 229 42-287 477-722 (1431)
73 COG5098 Chromosome condensatio 96.0 0.042 9.1E-07 64.1 11.0 133 74-207 273-418 (1128)
74 COG5096 Vesicle coat complex, 95.9 2 4.4E-05 52.3 24.9 172 102-291 20-196 (757)
75 PF14807 AP4E_app_platf: Adapt 95.8 0.13 2.9E-06 47.1 11.4 100 725-835 3-103 (104)
76 PF13646 HEAT_2: HEAT repeats; 95.8 0.038 8.2E-07 48.4 7.5 82 68-159 4-87 (88)
77 PF13513 HEAT_EZ: HEAT-like re 95.7 0.027 5.9E-07 45.1 5.8 49 114-162 1-55 (55)
78 PF02985 HEAT: HEAT repeat; I 95.7 0.014 3.1E-07 41.1 3.5 30 136-165 1-30 (31)
79 PF12755 Vac14_Fab1_bd: Vacuol 95.6 0.016 3.5E-07 52.5 4.7 66 129-195 21-88 (97)
80 cd00256 VATPase_H VATPase_H, r 95.6 1.5 3.3E-05 50.3 21.4 331 175-515 54-426 (429)
81 KOG0168 Putative ubiquitin fus 95.3 1.5 3.3E-05 52.9 20.5 179 101-289 168-363 (1051)
82 KOG1242 Protein containing ada 95.3 6.2 0.00014 46.5 24.9 384 145-547 27-439 (569)
83 KOG1241 Karyopherin (importin) 95.2 9.8 0.00021 45.9 33.0 448 42-532 232-732 (859)
84 KOG0915 Uncharacterized conser 95.2 10 0.00023 49.0 28.0 397 137-587 958-1383(1702)
85 COG5064 SRP1 Karyopherin (impo 95.2 0.19 4E-06 54.6 11.5 210 102-323 159-390 (526)
86 PF02296 Alpha_adaptin_C: Alph 95.2 0.12 2.6E-06 48.2 9.0 102 725-829 5-112 (113)
87 COG5064 SRP1 Karyopherin (impo 95.1 0.64 1.4E-05 50.6 15.2 243 148-401 128-397 (526)
88 KOG0946 ER-Golgi vesicle-tethe 94.9 12 0.00027 45.3 28.8 274 141-442 29-350 (970)
89 KOG1240 Protein kinase contain 94.7 2.1 4.5E-05 53.7 19.9 216 100-332 462-726 (1431)
90 KOG1077 Vesicle coat complex A 94.7 13 0.00028 44.5 29.2 333 81-441 61-436 (938)
91 KOG0211 Protein phosphatase 2A 94.5 17 0.00037 44.9 28.9 416 84-551 220-663 (759)
92 PF12719 Cnd3: Nuclear condens 94.3 1.2 2.5E-05 49.0 15.7 150 372-547 25-180 (298)
93 KOG1248 Uncharacterized conser 94.0 5.3 0.00011 50.3 21.2 232 52-294 600-860 (1176)
94 COG5215 KAP95 Karyopherin (imp 93.7 11 0.00024 44.0 21.7 101 101-202 367-477 (858)
95 KOG1820 Microtubule-associated 93.6 1.7 3.6E-05 53.8 16.3 195 129-335 247-447 (815)
96 KOG1248 Uncharacterized conser 93.4 14 0.00031 46.6 23.6 207 236-443 628-861 (1176)
97 PF05918 API5: Apoptosis inhib 93.3 5.1 0.00011 47.4 19.0 143 113-273 35-190 (556)
98 PF10363 DUF2435: Protein of u 93.3 0.32 6.8E-06 43.7 7.2 69 102-170 5-78 (92)
99 PF12460 MMS19_C: RNAPII trans 93.3 4.6 0.0001 46.5 18.8 224 78-307 163-411 (415)
100 KOG1517 Guanine nucleotide bin 93.0 1.1 2.5E-05 55.1 13.1 135 64-204 513-671 (1387)
101 PF12830 Nipped-B_C: Sister ch 92.8 0.73 1.6E-05 47.0 10.0 102 102-204 10-122 (187)
102 KOG2956 CLIP-associating prote 92.8 1.4 2.9E-05 50.2 12.6 155 21-182 284-491 (516)
103 KOG1822 Uncharacterized conser 92.7 6.7 0.00015 51.6 19.8 223 98-333 874-1129(2067)
104 KOG0413 Uncharacterized conser 92.5 6.8 0.00015 48.2 18.5 103 101-204 577-685 (1529)
105 smart00638 LPD_N Lipoprotein N 92.5 1.2 2.6E-05 53.5 13.0 96 101-202 447-543 (574)
106 KOG1949 Uncharacterized conser 92.4 2.4 5.3E-05 50.3 14.3 139 99-251 173-329 (1005)
107 PF10363 DUF2435: Protein of u 92.3 0.63 1.4E-05 41.8 7.7 70 137-207 5-75 (92)
108 PF13251 DUF4042: Domain of un 91.6 3.5 7.5E-05 41.9 13.1 155 151-334 2-177 (182)
109 PF08167 RIX1: rRNA processing 91.4 1.3 2.8E-05 44.2 9.8 119 300-444 23-149 (165)
110 PF13513 HEAT_EZ: HEAT-like re 91.3 0.077 1.7E-06 42.4 0.7 53 149-202 1-55 (55)
111 KOG4224 Armadillo repeat prote 91.3 11 0.00024 41.8 16.9 253 64-327 168-442 (550)
112 PF14500 MMS19_N: Dos2-interac 91.0 26 0.00056 37.8 20.4 109 308-416 129-253 (262)
113 KOG1222 Kinesin associated pro 90.7 37 0.0008 39.2 22.2 298 76-439 299-622 (791)
114 KOG2025 Chromosome condensatio 90.1 51 0.0011 39.8 27.5 144 54-199 29-188 (892)
115 KOG2160 Armadillo/beta-catenin 89.7 3.7 8E-05 45.5 11.9 140 378-517 129-285 (342)
116 PF08713 DNA_alkylation: DNA a 89.5 0.73 1.6E-05 47.5 6.3 130 68-207 56-187 (213)
117 PF12719 Cnd3: Nuclear condens 88.9 18 0.0004 39.6 17.1 67 136-205 28-94 (298)
118 KOG0211 Protein phosphatase 2A 88.6 10 0.00022 46.7 15.9 257 61-331 396-664 (759)
119 KOG2160 Armadillo/beta-catenin 88.1 8.4 0.00018 42.7 13.4 108 140-254 129-241 (342)
120 KOG0915 Uncharacterized conser 88.0 1E+02 0.0022 40.6 26.5 269 17-325 854-1196(1702)
121 KOG1949 Uncharacterized conser 86.7 5.4 0.00012 47.5 11.3 150 128-289 166-330 (1005)
122 PF01603 B56: Protein phosphat 86.3 24 0.00053 40.5 16.6 175 373-548 133-322 (409)
123 PF02854 MIF4G: MIF4G domain; 86.1 13 0.00029 37.3 13.2 148 358-514 3-163 (209)
124 KOG2274 Predicted importin 9 [ 86.1 1E+02 0.0022 38.5 26.8 314 237-587 463-813 (1005)
125 PF14664 RICTOR_N: Rapamycin-i 86.0 39 0.00084 38.4 17.8 207 309-518 33-273 (371)
126 smart00543 MIF4G Middle domain 85.0 22 0.00049 35.7 14.2 138 362-514 8-155 (200)
127 PF01347 Vitellogenin_N: Lipop 84.8 40 0.00086 40.8 18.5 19 383-401 500-518 (618)
128 COG5218 YCG1 Chromosome conden 84.5 96 0.0021 36.9 19.9 250 75-337 61-347 (885)
129 KOG1991 Nuclear transport rece 84.2 1.3E+02 0.0027 38.0 29.6 143 136-289 6-155 (1010)
130 KOG1991 Nuclear transport rece 83.4 1.4E+02 0.0029 37.8 27.5 127 113-246 431-569 (1010)
131 PF12460 MMS19_C: RNAPII trans 83.2 94 0.002 35.8 27.6 176 370-548 186-390 (415)
132 KOG0567 HEAT repeat-containing 83.2 5.3 0.00011 42.6 8.4 91 101-202 188-278 (289)
133 smart00638 LPD_N Lipoprotein N 83.0 85 0.0018 37.7 20.1 51 315-365 493-543 (574)
134 KOG0567 HEAT repeat-containing 83.0 14 0.00031 39.4 11.5 60 101-164 219-280 (289)
135 KOG2062 26S proteasome regulat 82.9 30 0.00065 41.9 15.2 138 53-204 474-618 (929)
136 KOG4653 Uncharacterized conser 82.2 24 0.00051 43.4 14.2 72 132-204 724-797 (982)
137 PF01347 Vitellogenin_N: Lipop 82.1 1.8 3.8E-05 52.5 5.3 97 100-202 490-587 (618)
138 KOG1525 Sister chromatid cohes 81.9 46 0.001 43.4 17.6 159 262-422 260-437 (1266)
139 KOG1293 Proteins containing ar 81.8 36 0.00078 40.7 15.3 135 112-254 389-534 (678)
140 KOG1943 Beta-tubulin folding c 81.5 1.7E+02 0.0036 37.4 23.8 231 129-406 335-577 (1133)
141 KOG2973 Uncharacterized conser 81.4 71 0.0015 35.1 16.2 64 138-205 6-72 (353)
142 KOG4500 Rho/Rac GTPase guanine 80.9 44 0.00096 38.1 14.8 235 98-340 267-528 (604)
143 KOG1243 Protein kinase [Genera 80.6 10 0.00022 45.6 10.4 121 43-163 290-436 (690)
144 PF08506 Cse1: Cse1; InterPro 78.7 3.2 6.9E-05 47.0 5.5 63 97-159 302-370 (370)
145 PF12755 Vac14_Fab1_bd: Vacuol 78.7 8.3 0.00018 35.0 7.2 69 482-551 25-96 (97)
146 KOG0168 Putative ubiquitin fus 78.2 48 0.001 40.9 14.9 175 226-405 169-367 (1051)
147 PF02985 HEAT: HEAT repeat; I 77.4 4 8.6E-05 28.6 3.7 28 176-204 2-29 (31)
148 KOG2933 Uncharacterized conser 77.3 28 0.0006 38.1 11.6 87 81-170 71-164 (334)
149 KOG4413 26S proteasome regulat 76.5 1.3E+02 0.0028 33.3 24.4 153 130-289 77-242 (524)
150 KOG2032 Uncharacterized conser 76.4 1.6E+02 0.0035 34.4 19.5 108 100-208 255-375 (533)
151 KOG0413 Uncharacterized conser 75.0 9.3 0.0002 47.1 8.0 124 81-206 949-1075(1529)
152 KOG1943 Beta-tubulin folding c 74.8 2.5E+02 0.0055 35.9 26.6 216 95-331 374-611 (1133)
153 KOG2274 Predicted importin 9 [ 74.8 2.3E+02 0.0051 35.5 25.4 236 117-368 427-690 (1005)
154 cd03569 VHS_Hrs_Vps27p VHS dom 74.6 22 0.00049 34.5 9.5 81 83-167 24-117 (142)
155 PF14664 RICTOR_N: Rapamycin-i 74.5 82 0.0018 35.8 15.3 128 74-204 36-176 (371)
156 cd06561 AlkD_like A new struct 73.8 31 0.00067 34.9 10.9 66 138-207 108-173 (197)
157 PF11935 DUF3453: Domain of un 73.5 50 0.0011 35.0 12.6 148 143-312 1-163 (239)
158 PF08713 DNA_alkylation: DNA a 73.5 1.8 3.9E-05 44.6 1.7 67 104-170 124-190 (213)
159 KOG2956 CLIP-associating prote 72.8 71 0.0015 36.9 13.9 155 118-288 307-475 (516)
160 PF12830 Nipped-B_C: Sister ch 72.5 86 0.0019 31.9 13.6 132 372-517 7-143 (187)
161 PF11698 V-ATPase_H_C: V-ATPas 72.2 9.2 0.0002 36.0 5.8 69 260-332 42-116 (119)
162 KOG2038 CAATT-binding transcri 72.0 1.6E+02 0.0035 36.1 17.0 74 132-208 301-374 (988)
163 cd03561 VHS VHS domain family; 71.2 26 0.00056 33.6 8.9 89 81-169 18-117 (133)
164 KOG1967 DNA repair/transcripti 69.8 42 0.00091 41.7 11.9 135 296-430 861-1016(1030)
165 PF00790 VHS: VHS domain; Int 69.8 19 0.00042 34.7 7.8 94 73-166 15-120 (140)
166 KOG2062 26S proteasome regulat 68.4 14 0.00031 44.5 7.5 17 145-161 634-650 (929)
167 KOG4413 26S proteasome regulat 68.3 2E+02 0.0043 31.9 21.5 199 44-252 63-285 (524)
168 KOG2022 Nuclear transport rece 67.2 2.9E+02 0.0064 34.6 18.0 84 87-170 536-626 (982)
169 PF14631 FancD2: Fanconi anaem 67.1 2.1E+02 0.0045 38.5 18.4 137 261-403 435-588 (1426)
170 PF03224 V-ATPase_H_N: V-ATPas 66.9 62 0.0014 35.6 12.1 143 186-330 68-226 (312)
171 PF12765 Cohesin_HEAT: HEAT re 66.6 5.5 0.00012 30.3 2.5 22 135-156 18-39 (42)
172 PF05004 IFRD: Interferon-rela 66.4 2.1E+02 0.0046 31.6 17.6 187 137-333 45-259 (309)
173 PF12231 Rif1_N: Rap1-interact 66.1 2.4E+02 0.0051 32.0 22.6 134 73-207 3-166 (372)
174 PF08167 RIX1: rRNA processing 66.1 68 0.0015 31.9 11.0 105 236-342 40-154 (165)
175 KOG1820 Microtubule-associated 65.8 1.3E+02 0.0028 37.7 15.4 163 41-204 267-443 (815)
176 PF12765 Cohesin_HEAT: HEAT re 65.8 6.7 0.00014 29.8 2.9 32 90-121 6-39 (42)
177 PF12074 DUF3554: Domain of un 65.0 1.5E+02 0.0032 33.0 14.8 53 112-164 35-90 (339)
178 cd06561 AlkD_like A new struct 64.4 5.3 0.00012 40.5 2.9 66 105-170 110-176 (197)
179 PF13251 DUF4042: Domain of un 64.3 20 0.00044 36.4 6.9 120 79-204 18-174 (182)
180 KOG4535 HEAT and armadillo rep 63.1 1.2E+02 0.0025 35.4 12.9 160 146-333 7-181 (728)
181 cd03568 VHS_STAM VHS domain fa 62.0 60 0.0013 31.7 9.5 86 82-167 19-113 (144)
182 PF01603 B56: Protein phosphat 60.9 2.5E+02 0.0055 32.3 15.9 73 132-204 130-204 (409)
183 PF08568 Kinetochor_Ybp2: Unch 59.4 2.4E+02 0.0052 34.5 16.3 69 131-203 438-506 (633)
184 PF08569 Mo25: Mo25-like; Int 56.8 3.3E+02 0.0071 30.6 22.3 154 179-399 169-332 (335)
185 smart00288 VHS Domain present 56.7 1E+02 0.0023 29.5 10.1 90 78-167 15-114 (133)
186 KOG4653 Uncharacterized conser 56.3 54 0.0012 40.5 9.5 103 100-202 847-962 (982)
187 PF00514 Arm: Armadillo/beta-c 56.0 19 0.00042 26.6 3.9 27 136-162 13-39 (41)
188 KOG1992 Nuclear export recepto 55.0 5.2E+02 0.011 32.3 29.4 168 134-310 5-184 (960)
189 KOG2759 Vacuolar H+-ATPase V1 51.4 26 0.00056 39.8 5.5 72 260-332 365-439 (442)
190 PF08389 Xpo1: Exportin 1-like 50.2 2.2E+02 0.0047 26.8 11.4 51 149-203 2-53 (148)
191 PF05536 Neurochondrin: Neuroc 49.9 3.8E+02 0.0082 32.2 15.4 27 308-334 11-37 (543)
192 KOG2759 Vacuolar H+-ATPase V1 49.7 4.6E+02 0.01 30.2 25.1 357 111-514 61-438 (442)
193 PF12530 DUF3730: Protein of u 49.4 3.4E+02 0.0074 28.6 16.4 160 111-288 12-187 (234)
194 PF03224 V-ATPase_H_N: V-ATPas 49.4 3.3E+02 0.0072 29.9 14.0 69 136-204 106-179 (312)
195 KOG0891 DNA-dependent protein 49.3 2.6E+02 0.0056 39.3 15.1 279 119-412 463-773 (2341)
196 KOG4500 Rho/Rac GTPase guanine 49.2 2.3E+02 0.0049 32.7 12.3 153 51-205 296-476 (604)
197 KOG4524 Uncharacterized conser 48.9 1E+02 0.0022 38.8 10.3 75 131-207 799-879 (1014)
198 PF14631 FancD2: Fanconi anaem 48.5 2.6E+02 0.0056 37.6 14.7 192 129-332 429-641 (1426)
199 PF14676 FANCI_S2: FANCI solen 48.2 82 0.0018 31.3 8.0 73 470-544 81-153 (158)
200 PF13001 Ecm29: Proteasome sta 48.1 95 0.0021 36.8 10.0 151 45-203 271-442 (501)
201 PF05536 Neurochondrin: Neuroc 47.8 5.7E+02 0.012 30.7 29.0 178 148-334 69-264 (543)
202 PF14500 MMS19_N: Dos2-interac 47.7 3.9E+02 0.0085 28.8 14.4 201 236-442 11-241 (262)
203 PF12530 DUF3730: Protein of u 46.9 1.9E+02 0.0042 30.4 11.2 107 96-205 34-152 (234)
204 COG5218 YCG1 Chromosome conden 46.3 6.1E+02 0.013 30.6 21.4 74 130-204 86-161 (885)
205 cd03567 VHS_GGA VHS domain fam 45.2 1.2E+02 0.0025 29.5 8.4 52 154-208 20-71 (139)
206 PF11698 V-ATPase_H_C: V-ATPas 45.1 69 0.0015 30.3 6.5 67 372-438 42-115 (119)
207 PF00514 Arm: Armadillo/beta-c 45.0 30 0.00065 25.6 3.4 31 172-203 10-40 (41)
208 KOG4535 HEAT and armadillo rep 44.2 15 0.00032 42.2 2.3 128 74-204 23-179 (728)
209 COG5116 RPN2 26S proteasome re 43.6 1E+02 0.0022 36.5 8.7 116 74-204 493-615 (926)
210 KOG2213 Apoptosis inhibitor 5/ 43.3 5.6E+02 0.012 29.3 25.8 78 67-145 29-106 (460)
211 COG5215 KAP95 Karyopherin (imp 42.8 6.7E+02 0.015 30.1 32.4 451 94-568 54-591 (858)
212 cd00872 PI3Ka_I Phosphoinositi 42.3 2.2E+02 0.0047 28.7 10.0 93 42-142 21-113 (171)
213 KOG2213 Apoptosis inhibitor 5/ 42.2 5.8E+02 0.013 29.2 16.5 60 324-383 46-106 (460)
214 PF10274 ParcG: Parkin co-regu 41.8 34 0.00074 34.8 4.2 50 131-182 76-125 (183)
215 COG5116 RPN2 26S proteasome re 41.6 1.5E+02 0.0034 35.1 9.7 157 45-212 499-659 (926)
216 KOG1992 Nuclear export recepto 41.3 8.2E+02 0.018 30.7 30.2 103 76-182 52-173 (960)
217 PF10274 ParcG: Parkin co-regu 41.0 1.7E+02 0.0036 29.9 9.0 72 134-207 37-112 (183)
218 cd03568 VHS_STAM VHS domain fa 40.9 1.3E+02 0.0029 29.3 8.1 47 159-208 24-70 (144)
219 cd03567 VHS_GGA VHS domain fam 40.8 2E+02 0.0043 27.9 9.2 85 83-167 21-119 (139)
220 PF09759 Atx10homo_assoc: Spin 40.4 72 0.0016 29.3 5.7 61 502-563 3-70 (102)
221 PF11701 UNC45-central: Myosin 40.0 90 0.002 30.8 6.9 118 146-272 16-139 (157)
222 cd03572 ENTH_epsin_related ENT 39.7 34 0.00073 32.5 3.6 42 129-170 32-73 (122)
223 PF00790 VHS: VHS domain; Int 39.5 1.5E+02 0.0032 28.6 8.2 89 154-251 24-116 (140)
224 KOG2137 Protein kinase [Signal 39.1 5.3E+02 0.011 31.7 14.0 59 383-442 439-500 (700)
225 PF11707 Npa1: Ribosome 60S bi 38.3 6E+02 0.013 28.2 17.0 109 226-334 58-190 (330)
226 PF12825 DUF3818: Domain of un 37.8 6.3E+02 0.014 28.4 16.1 184 253-443 106-307 (341)
227 PF10521 DUF2454: Protein of u 37.5 2.5E+02 0.0054 30.5 10.5 73 130-203 114-202 (282)
228 KOG1243 Protein kinase [Genera 37.3 5.2E+02 0.011 31.6 13.5 165 58-253 246-418 (690)
229 KOG2011 Sister chromatid cohes 37.0 2.1E+02 0.0045 36.8 10.6 109 94-202 276-397 (1048)
230 cd00870 PI3Ka_III Phosphoinosi 36.7 2.2E+02 0.0047 28.5 9.1 93 42-142 28-120 (166)
231 KOG2199 Signal transducing ada 35.8 1.3E+02 0.0029 34.0 7.8 90 69-158 14-112 (462)
232 KOG1293 Proteins containing ar 35.6 9E+02 0.019 29.5 28.0 126 433-562 407-543 (678)
233 PF08506 Cse1: Cse1; InterPro 34.8 1.7E+02 0.0037 33.2 9.0 123 153-278 228-363 (370)
234 cd07064 AlkD_like_1 A new stru 34.1 5.4E+02 0.012 26.5 12.2 129 69-207 52-182 (208)
235 PF08563 P53_TAD: P53 transact 34.1 19 0.0004 24.2 0.6 19 723-741 6-24 (25)
236 PF12397 U3snoRNP10: U3 small 33.9 3.9E+02 0.0084 24.8 9.9 73 131-206 2-76 (121)
237 PF13981 SopA: SopA-like centr 33.8 2.8E+02 0.006 26.9 8.9 51 499-549 67-120 (135)
238 KOG2137 Protein kinase [Signal 33.5 1.8E+02 0.0038 35.6 9.0 53 235-289 440-495 (700)
239 PLN03076 ARF guanine nucleotid 33.3 2.7E+02 0.0058 38.3 11.5 139 175-316 1345-1516(1780)
240 KOG2085 Serine/threonine prote 32.6 3.5E+02 0.0076 31.0 10.5 80 468-548 282-366 (457)
241 KOG2153 Protein involved in th 32.4 7.8E+02 0.017 29.9 13.7 160 119-289 194-391 (704)
242 PF10521 DUF2454: Protein of u 32.3 2.1E+02 0.0046 31.0 9.0 38 298-335 115-152 (282)
243 PF14961 BROMI: Broad-minded p 32.2 8.3E+02 0.018 32.0 14.6 72 483-554 160-234 (1296)
244 cd00864 PI3Ka Phosphoinositide 31.7 4.2E+02 0.0091 26.0 10.1 94 41-142 20-113 (152)
245 cd03561 VHS VHS domain family; 31.3 3.8E+02 0.0083 25.4 9.6 77 256-332 32-113 (133)
246 PF07749 ERp29: Endoplasmic re 31.3 2.6E+02 0.0056 25.2 7.8 57 380-438 12-73 (95)
247 smart00185 ARM Armadillo/beta- 30.5 66 0.0014 23.0 3.3 27 136-162 13-39 (41)
248 PF12231 Rif1_N: Rap1-interact 30.5 8.4E+02 0.018 27.6 21.9 214 115-330 107-351 (372)
249 PF03130 HEAT_PBS: PBS lyase H 30.3 71 0.0015 21.6 3.1 25 116-140 1-25 (27)
250 KOG2149 Uncharacterized conser 30.1 2.2E+02 0.0048 32.4 8.6 63 140-203 63-127 (393)
251 PF04388 Hamartin: Hamartin pr 29.5 2E+02 0.0042 35.5 8.8 86 119-207 55-143 (668)
252 PF13929 mRNA_stabil: mRNA sta 28.3 2.3E+02 0.005 31.0 8.0 178 41-242 26-221 (292)
253 smart00288 VHS Domain present 28.3 2.8E+02 0.0062 26.4 8.1 49 156-207 21-69 (133)
254 PHA03159 hypothetical protein; 27.5 72 0.0016 30.2 3.5 45 124-170 1-45 (160)
255 PF07539 DRIM: Down-regulated 27.1 3.4E+02 0.0073 26.4 8.4 59 302-384 17-75 (141)
256 PF09324 DUF1981: Domain of un 26.8 2.8E+02 0.006 24.4 7.1 67 483-549 16-85 (86)
257 cd00197 VHS_ENTH_ANTH VHS, ENT 26.7 3.4E+02 0.0074 24.8 8.1 50 78-127 15-64 (115)
258 KOG2973 Uncharacterized conser 26.6 9.2E+02 0.02 26.8 17.7 61 103-165 6-72 (353)
259 PF00613 PI3Ka: Phosphoinositi 26.6 4.7E+02 0.01 26.5 9.7 93 42-142 27-119 (184)
260 cd03569 VHS_Hrs_Vps27p VHS dom 26.5 4.8E+02 0.01 25.3 9.3 50 155-207 24-73 (142)
261 smart00567 EZ_HEAT E-Z type HE 26.1 81 0.0018 21.5 2.9 24 115-138 2-25 (30)
262 PF14225 MOR2-PAG1_C: Cell mor 26.0 8.5E+02 0.018 26.2 17.2 80 357-439 134-218 (262)
263 cd00871 PI4Ka Phosphoinositide 25.9 1E+02 0.0022 31.2 4.6 59 90-152 65-123 (175)
264 COG5231 VMA13 Vacuolar H+-ATPa 25.6 1.2E+02 0.0027 33.5 5.3 71 260-331 355-428 (432)
265 PF06685 DUF1186: Protein of u 24.9 8.8E+02 0.019 26.0 12.5 153 370-534 28-200 (249)
266 COG5369 Uncharacterized conser 24.6 2E+02 0.0044 34.0 7.1 141 135-282 431-586 (743)
267 COG5110 RPN1 26S proteasome re 24.2 2.5E+02 0.0054 33.3 7.7 86 113-203 617-704 (881)
268 PF08623 TIP120: TATA-binding 23.8 1E+02 0.0022 31.0 4.2 58 148-207 40-97 (169)
269 KOG2005 26S proteasome regulat 23.4 1.6E+02 0.0035 35.6 6.1 82 114-203 622-703 (878)
270 PF14676 FANCI_S2: FANCI solen 23.1 5E+02 0.011 25.7 8.9 51 154-207 37-87 (158)
271 KOG2140 Uncharacterized conser 22.6 3.2E+02 0.007 32.3 8.1 23 358-380 167-189 (739)
272 smart00185 ARM Armadillo/beta- 22.3 1.2E+02 0.0027 21.5 3.5 30 173-203 11-40 (41)
273 PF12031 DUF3518: Domain of un 21.9 2.1E+02 0.0046 30.5 6.1 73 349-421 135-228 (257)
274 smart00540 LEM in nuclear memb 21.8 1.9E+02 0.0042 22.3 4.3 35 23-57 9-43 (44)
275 cd08050 TAF6 TATA Binding Prot 21.5 1.1E+03 0.024 26.4 12.3 74 127-202 250-338 (343)
276 cd00197 VHS_ENTH_ANTH VHS, ENT 21.4 3.7E+02 0.0081 24.6 7.3 51 154-207 19-69 (115)
277 KOG1048 Neural adherens juncti 21.3 9.8E+02 0.021 29.7 12.3 126 114-263 517-651 (717)
278 PF08767 CRM1_C: CRM1 C termin 21.1 1.1E+03 0.025 25.9 13.5 90 458-549 86-191 (319)
279 PF12397 U3snoRNP10: U3 small 20.4 6.8E+02 0.015 23.1 10.2 86 98-188 4-95 (121)
280 COG5593 Nucleic-acid-binding p 20.3 1E+03 0.022 28.3 11.4 62 344-405 196-260 (821)
281 smart00145 PI3Ka Phosphoinosit 20.0 9.3E+02 0.02 24.5 10.5 94 42-142 25-118 (184)
No 1
>PTZ00429 beta-adaptin; Provisional
Probab=100.00 E-value=5.4e-115 Score=1028.17 Aligned_cols=582 Identities=29% Similarity=0.472 Sum_probs=534.0
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCCcchHHHHHHHHH
Q 003201 9 RSPSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVG 88 (840)
Q Consensus 9 ~~~~~~~~~~k~Ei~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG~DvS~lF~~Vi~l~~S~d~~~KkL~YLyl~ 88 (840)
+...-|..++|||++|||++|++ .+..+|++++||+|++|++|+|||++|++|+++++|+|+++|||||||++
T Consensus 21 ~~~~~f~~~~kge~~ELr~~L~s-------~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~ 93 (746)
T PTZ00429 21 TGSKYFAQTRRGEGAELQNDLNG-------TDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVL 93 (746)
T ss_pred CccccccccccchHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44566777789999999999986 45578999999999999999999999999999999999999999999999
Q ss_pred HhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCC
Q 003201 89 NYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP 168 (840)
Q Consensus 89 ~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~ 168 (840)
+|++.+||+++|+||+|+|||+|+||++||+|||+||+|+++++++++.++|++++.|++|||||+|++|++|+|+.+|+
T Consensus 94 ~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe 173 (746)
T PTZ00429 94 STARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ 173 (746)
T ss_pred HHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHH
Q 003201 169 TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELV 248 (840)
Q Consensus 169 ~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL 248 (840)
.+.+.+|.+.|.++ +.|+||+|++||+.+|++|...+|+ .+. +.++++++|++.+++++||+|+.||++|
T Consensus 174 lv~~~~~~~~L~~L-L~D~dp~Vv~nAl~aL~eI~~~~~~--------~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL 243 (746)
T PTZ00429 174 LFYQQDFKKDLVEL-LNDNNPVVASNAAAIVCEVNDYGSE--------KIE-SSNEWVNRLVYHLPECNEWGQLYILELL 243 (746)
T ss_pred cccccchHHHHHHH-hcCCCccHHHHHHHHHHHHHHhCch--------hhH-HHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 98778999999997 7999999999999999999876553 122 3456799999999999999999999999
Q ss_pred HhcCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCC-chhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHH
Q 003201 249 AKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM-TDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLH 327 (840)
Q Consensus 249 ~~y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~-~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~ 327 (840)
.+|.|.+.++++++++.+.++|+|+|+||+++|+|+|+++.... ++...+++.|++.||++|++ +++|+||++|++|.
T Consensus 244 ~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~s-s~~eiqyvaLr~I~ 322 (746)
T PTZ00429 244 AAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSR-RDAETQYIVCKNIH 322 (746)
T ss_pred HhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC-CCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997653 45667888999999998865 68999999999999
Q ss_pred HHHhhCCCcccccccEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCC-
Q 003201 328 ILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD- 406 (840)
Q Consensus 328 ~l~~~~p~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~- 406 (840)
.|++++|.+|.+|++.|||+++||.|||++|||||+.|||++|+.+|++||.+|+++.|.+|++++|++||+||.|+|+
T Consensus 323 ~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~ 402 (746)
T PTZ00429 323 ALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSV 402 (746)
T ss_pred HHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred hHHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchhHHHHHHh-hhcccCCchHHHHHHHHHHcCcCCCCCChHHH
Q 003201 407 VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGS-ISSQNVQEPKAKAALIWMLGEYSQDMQDAPYI 485 (840)
Q Consensus 407 ~~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~~~~l~~-l~~~~i~~~~ak~a~iwilGEy~~~i~~~~~i 485 (840)
..|||++|+++++.+++++ .|++.++++|+|+||+.+ .+..++. +..+.+++|++|++++||||||++.+++++++
T Consensus 403 a~~cV~~Ll~ll~~~~~~v-~e~i~vik~IlrkyP~~~--il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~~~ 479 (746)
T PTZ00429 403 APDCANLLLQIVDRRPELL-PQVVTAAKDIVRKYPELL--MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGKDI 479 (746)
T ss_pred HHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHCccHH--HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhHHHH
Confidence 5899999999999877764 588999999999999863 3333333 22367899999999999999999999999999
Q ss_pred HHHHHHhhccCCcHHHHHHHHHHHhHHhhcCChhHHHHHHHHHHhhcc-CCChHHHhHHHHHHHHccCCH--HHHHhhcC
Q 003201 486 LESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLA-DFHQDVHDRALFYHRLLQYNV--SVAERVVN 562 (840)
Q Consensus 486 l~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~~~~l~~vL~~~~~-d~d~dVrdRA~~Y~rLL~~~~--~~a~~vv~ 562 (840)
|+.++++|.+|+ ++||+++||+++|+|+++|++++++++++|+.+++ +.|+||||||++|||||+.++ +.|++||+
T Consensus 480 L~~~i~~f~~E~-~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs~~~~~~~a~~iv~ 558 (746)
T PTZ00429 480 IQRFIDTIMEHE-QRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVTTHSDDPDVRDRAFAYWRLLSKGITVAQMKKVVH 558 (746)
T ss_pred HHHHHhhhccCC-HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCcHHHHHHHHc
Confidence 999999999999 99999999999999999999999999999998865 589999999999999999874 67899999
Q ss_pred CCCCCccccccCCCHHHHHHHHHhhCcchhhccCCCcccccCCCCCCCcc
Q 003201 563 PPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKDYRGPFEF 612 (840)
Q Consensus 563 ~~~p~~~~~~~~~~~~~~~~l~~~~~tls~vy~k~~~~f~~~~~~~~~~~ 612 (840)
+++|+++...+..+++++++|+.+|||||+||+||++.|+++.+.+..+.
T Consensus 559 ~~~~~i~~~~~~~d~~~l~~L~~~~~tlssvY~kp~~~f~~~~~~~~~~~ 608 (746)
T PTZ00429 559 GQMVPVNVDSTFSDAMTMADLKKSLNTAAIVFARPYQSFLPPYGLADVEL 608 (746)
T ss_pred CCCCCCCcccccCCHHHHHHHHHhcCceeeeecCCHHHhcCchhcccccc
Confidence 99999876545567789999999999999999999999999987654443
No 2
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-115 Score=987.09 Aligned_cols=584 Identities=41% Similarity=0.680 Sum_probs=554.6
Q ss_pred CCCCCCCCCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCCcchHHHHHHHHHHh
Q 003201 11 PSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNY 90 (840)
Q Consensus 11 ~~~~~~~~k~Ei~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG~DvS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~ 90 (840)
.+-|.+.+|+|+.|+|++|.+ +..++|++++||+|+.|+.|+|||.+|++|+++++|.|+++|||+|||+++|
T Consensus 4 ~k~F~~~~k~ei~elks~l~s-------~~~~kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nY 76 (734)
T KOG1061|consen 4 SKYFSTDKKGEIPELKSQLNS-------QSKEKRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNY 76 (734)
T ss_pred ccccCcchhhhchHHHHHhhh-------hhhhhHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHh
Confidence 344566679999999999954 3347999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcc
Q 003201 91 AKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (840)
Q Consensus 91 ~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~ 170 (840)
+..+|+++++++|+|.||+.|+||++|++|+|+||+++++.+.++++.+++++++|.+|||||+|+.|+.|+|+.+|+.+
T Consensus 77 a~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~ 156 (734)
T KOG1061|consen 77 AKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLV 156 (734)
T ss_pred hccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHh
Q 003201 171 IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAK 250 (840)
Q Consensus 171 ~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~ 250 (840)
.+.++++.|+++ +.|+||+|++||+++|.||...+++.. ...+++++++++++++++|+||+|+.||+.+..
T Consensus 157 ~~~gl~~~L~~l-l~D~~p~VVAnAlaaL~eI~e~~~~~~-------~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~ 228 (734)
T KOG1061|consen 157 EDSGLVDALKDL-LSDSNPMVVANALAALSEIHESHPSVN-------LLELNPQLINKLLEALNECTEWGQIFILDCLAE 228 (734)
T ss_pred cccchhHHHHHH-hcCCCchHHHHHHHHHHHHHHhCCCCC-------cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Confidence 999999999998 689999999999999999998776421 145678899999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHH
Q 003201 251 YVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILV 330 (840)
Q Consensus 251 y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~ 330 (840)
|.|.++.|+++|++++.++|+|+|++|+++++|+++++....+++...+++|+.+||++++++.+ +++|++|++++.++
T Consensus 229 y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil 307 (734)
T KOG1061|consen 229 YVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLIL 307 (734)
T ss_pred cCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999887777778899999999999999764 99999999999999
Q ss_pred hhCCCcccccccEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCChHHH
Q 003201 331 MRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAI 410 (840)
Q Consensus 331 ~~~p~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~~~~ 410 (840)
+++|++|..++++|||+||||+|||..|||+++.++|.+|+.+|+.||.+|+++.|.+|++++|++||+||.|+++.+.|
T Consensus 308 ~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~~~c 387 (734)
T KOG1061|consen 308 QKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQSNDC 387 (734)
T ss_pred HhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887789
Q ss_pred HHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchhHHHHHHhhhcccCCchHHHHHHHHHHcCcCCCCCChHHHHHHHH
Q 003201 411 VDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLT 490 (840)
Q Consensus 411 v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~~~~l~~l~~~~i~~~~ak~a~iwilGEy~~~i~~~~~il~~l~ 490 (840)
|++++++++.+.+|+++|++++|++|+|+||+..+..+..++.- .+++++|++|++++||+|||++.|+|++++|+.|+
T Consensus 388 v~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~-~~sl~epeak~amiWilg~y~~~i~~a~elL~~f~ 466 (734)
T KOG1061|consen 388 VSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCEN-LDSLQEPEAKAALIWILGEYAERIENALELLESFL 466 (734)
T ss_pred HHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhccc-ccccCChHHHHHHHHHHhhhhhccCcHHHHHHHHH
Confidence 99999999999999999999999999999999987766666554 48999999999999999999999999999999999
Q ss_pred HhhccCCcHHHHHHHHHHHhHHhhcCChhHHHHHHHHHHhhccC-CChHHHhHHHHHHHHccCCHHHHHhhcCCCCCCcc
Q 003201 491 ENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLAD-FHQDVHDRALFYHRLLQYNVSVAERVVNPPKQAVS 569 (840)
Q Consensus 491 ~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~~~~l~~vL~~~~~d-~d~dVrdRA~~Y~rLL~~~~~~a~~vv~~~~p~~~ 569 (840)
++|.+|+ .+||+++|||++|+|+++|.+.|++++.+|..|+.+ .|+|+||||++|||+|+.++..|++|+++++|.++
T Consensus 467 en~~dE~-~~Vql~LLta~ik~Fl~~p~~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs~~~~~a~~v~~~~kP~is 545 (734)
T KOG1061|consen 467 ENFKDET-AEVQLELLTAAIKLFLKKPTETQELLQGVLPLATADTDNPDLRDRGLIYWRLLSEDPLIAKDVVLAEKPLIS 545 (734)
T ss_pred hhcccch-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhhhccccChhhhhhHHHHHHHhhcCHHHHHHHHhcCCCccc
Confidence 9999999 999999999999999999999999999999999987 58999999999999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHhhCcchhhccCCCcccccCCCCCCCcc
Q 003201 570 VFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKDYRGPFEF 612 (840)
Q Consensus 570 ~~~~~~~~~~~~~l~~~~~tls~vy~k~~~~f~~~~~~~~~~~ 612 (840)
...+..++.++|+|+.+|||+|+|||||+++|+.+.+.+.+..
T Consensus 546 ~~~~~~~p~~le~l~~~i~tlssVY~Kp~~~f~~~~~~~~~~~ 588 (734)
T KOG1061|consen 546 EETDSLDPTLLEELLCDIGTLSSVYHKPPSAFVEGQKGGLFKR 588 (734)
T ss_pred cCCCCCCchHHHHHHHhhccccceeecChHHhcCcCcccccCC
Confidence 9888899999999999999999999999999999998777765
No 3
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-87 Score=749.41 Aligned_cols=542 Identities=30% Similarity=0.488 Sum_probs=492.3
Q ss_pred cHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCCcchHHHHHHHHHHhccCCCchHHH
Q 003201 21 EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALL 100 (840)
Q Consensus 21 Ei~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG~DvS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL 100 (840)
+=.+|++-|.+ |+ +..|++|||++|++|+.|.|+|.+|++|||+++|+|.+.|||+|+||.+||+++||+++|
T Consensus 36 ~~~dL~~lLdS----nk---d~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL 108 (968)
T KOG1060|consen 36 RHDDLKQLLDS----NK---DSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL 108 (968)
T ss_pred ChHHHHHHHhc----cc---cHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee
Confidence 45567777765 32 378999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHH
Q 003201 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (840)
Q Consensus 101 ~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~ 180 (840)
.||||||+|.||||++||.|||+|++||++.+++.+.-.|+++..|++|||||+||.|+.|+|..+|+.- ..+.+.++
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k--~qL~e~I~ 186 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK--DQLEEVIK 186 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH--HHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 57888888
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCC----C-
Q 003201 181 HLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL----D- 255 (840)
Q Consensus 181 ~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~----~- 255 (840)
.| |.|.+|.|+++|+.++.|+ ||++..+||+ .+++||+.+.+.++|+|+.++++|.+|++. .
T Consensus 187 ~L-LaD~splVvgsAv~AF~ev-----------CPerldLIHk-nyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~ 253 (968)
T KOG1060|consen 187 KL-LADRSPLVVGSAVMAFEEV-----------CPERLDLIHK-NYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPT 253 (968)
T ss_pred HH-hcCCCCcchhHHHHHHHHh-----------chhHHHHhhH-HHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCcc
Confidence 87 7999999999999999998 5678889998 599999999999999999999999999721 0
Q ss_pred ----------------------------hhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHH
Q 003201 256 ----------------------------SNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPL 307 (840)
Q Consensus 256 ----------------------------~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L 307 (840)
..+..-+++...++|++.|++||+++++++.++.+.. + ..+++.+|
T Consensus 254 ~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~-~-----~~~i~kaL 327 (968)
T KOG1060|consen 254 VVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN-Q-----VTKIAKAL 327 (968)
T ss_pred ccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH-H-----HHHHHHHH
Confidence 1234557788899999999999999999999998753 1 24578899
Q ss_pred HHhhcCCCchhHHHHHHHHHHHHhhCCCcccccccEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcCCH
Q 003201 308 LTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDI 387 (840)
Q Consensus 308 ~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~ 387 (840)
+++|.+ .+++||++|++|..|+.+.|.+|.+|++.||++..||.-||..||+||..|+|+.|+..|++||..|+.+.|.
T Consensus 328 vrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~ 406 (968)
T KOG1060|consen 328 VRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDR 406 (968)
T ss_pred HHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCch
Confidence 999986 5899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCh-HHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchhHHHHHHhhhcccCCchHHHH
Q 003201 388 PIARESIRAVGKIALQQYDV-NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKA 466 (840)
Q Consensus 388 ~~~~~~i~aI~~la~k~~~~-~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~~~~l~~l~~~~i~~~~ak~ 466 (840)
+|+..+|++||+||.+.-.+ ..|++.|+.|++.....|+.|.+.+|+.++++.|..+..++..+.+++ +++.-|.||+
T Consensus 407 ~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~ll-dti~vp~ARA 485 (968)
T KOG1060|consen 407 SFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLL-DTILVPAARA 485 (968)
T ss_pred hHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHh-hhhhhhhhhc
Confidence 99999999999999987655 459999999999999999999999999999999998877777777775 8899999999
Q ss_pred HHHHHHcCcCCCCCC-hHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCChhHHHHHHHHHHhhccCCChHHHhHHHH
Q 003201 467 ALIWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALF 545 (840)
Q Consensus 467 a~iwilGEy~~~i~~-~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~~~~l~~vL~~~~~d~d~dVrdRA~~ 545 (840)
+++|++|||++.++. +|++||.++++|.+|. ++||+|+|...+|||+..+.+.+.+++++|+.+.+|.++|+||||+|
T Consensus 486 ~IiWLige~~e~vpri~PDVLR~laksFs~E~-~evKlQILnL~aKLyl~~~~~~kll~~Yv~~L~~yD~sYDiRDRaRF 564 (968)
T KOG1060|consen 486 GIIWLIGEYCEIVPRIAPDVLRKLAKSFSDEG-DEVKLQILNLSAKLYLTNIDQTKLLVQYVFELARYDLSYDIRDRARF 564 (968)
T ss_pred eeeeeehhhhhhcchhchHHHHHHHHhhcccc-chhhHHHHHhhhhheEechhhHHHHHHHHHHHhccCCCcchhHHHHH
Confidence 999999999999875 9999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCH---HHHHhhcCCCCCCccccccCCCHHHHHHHHHhhCcchhhccCCCc
Q 003201 546 YHRLLQYNV---SVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSY 599 (840)
Q Consensus 546 Y~rLL~~~~---~~a~~vv~~~~p~~~~~~~~~~~~~~~~l~~~~~tls~vy~k~~~ 599 (840)
|..|+.... +.+++++++.||.... +..+.++ +-.+|++|.+.+.|.-
T Consensus 565 ~r~l~~~~~~Ls~h~~ei~l~~Kpa~~~-----es~f~~~-~~~~gslS~lLn~~a~ 615 (968)
T KOG1060|consen 565 LRQLISPLEALSKHAREIFLASKPAPVL-----ESSFKDR-HYQLGSLSLLLNAPAP 615 (968)
T ss_pred HHHHhccHHHHHHHHHHHhhccCCCccC-----cccccCC-CcccchHHHHhcCcCc
Confidence 999988753 4678999999987532 2223334 4578999999887754
No 4
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-77 Score=661.56 Aligned_cols=544 Identities=20% Similarity=0.258 Sum_probs=468.4
Q ss_pred CcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCCcchHHHHHHHHHHhccCCCchHH
Q 003201 20 GEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL 99 (840)
Q Consensus 20 ~Ei~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG~DvS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~l 99 (840)
.|+..||+.|+. .+...+ -+||++++|++|++++|+|+.+++++.+++++++.|++|.+|||+++.+.++|+|+.-
T Consensus 35 kELanIRskFk~--~K~L~g--YqkKKYV~KLlyI~llg~dIdFGhmEaV~LLss~kysEKqIGYl~is~L~n~n~dl~k 110 (938)
T KOG1077|consen 35 KELANIRSKFKG--DKTLDG--YQKKKYVCKLLYIYLLGYDIDFGHMEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMK 110 (938)
T ss_pred HHHHHHHHHhcc--ccccch--hhhHHHHHHHHHHHHhcCccccchHHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHH
Confidence 578888988876 223334 4789999999999999999998888889999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCC--ChHHHHHHHHHHHHHHhhcCCcccCCCchH
Q 003201 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDN--NSYVRTVAVIGVLKLYHISAPTCIDADFPP 177 (840)
Q Consensus 100 L~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~--~pyVRK~Aala~~kl~~~~p~~~~~~~~~~ 177 (840)
|++|+++|||.+.||...+|||.++++|+..++++.+.++|-|+|.++ .+||||+||+|++++|+.+||.+...+|.+
T Consensus 111 lvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~ 190 (938)
T KOG1077|consen 111 LVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQ 190 (938)
T ss_pred HHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHH
Confidence 999999999999999999999999999999999999999999999765 589999999999999999999997779999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhh-------------ccCChhHHHHH
Q 003201 178 TLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI-------------KEFSEWAQCLV 244 (840)
Q Consensus 178 ~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l-------------~~~~~W~Qi~i 244 (840)
++..+ |+|+|.+|+.++..++.-|.+++|..+ ..| +. ..+.+|.+.. ..++||+|+++
T Consensus 191 riv~L-L~D~~~gv~ta~~sLi~~lvk~~p~~y-k~~------~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl 261 (938)
T KOG1077|consen 191 RIVHL-LDDQHMGVVTAATSLIEALVKKNPESY-KTC------LP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKL 261 (938)
T ss_pred HHHHH-hCccccceeeehHHHHHHHHHcCCHHH-hhh------HH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHH
Confidence 99997 799999999999999999999887522 122 11 2344444421 23799999999
Q ss_pred HHHHHhcC-CCChhHHHHHHHHHHHHh------------ccCC--hHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHH
Q 003201 245 LELVAKYV-PLDSNEIFDIMNLLEDRL------------QHAN--GAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLT 309 (840)
Q Consensus 245 L~lL~~y~-p~~~~e~~~il~~l~~~L------------~~~n--~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~ 309 (840)
+++|+.|. |+|+.....+.+.+...| +|+| +||+|||+++++|++... +++.|.++.|+.
T Consensus 262 ~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~-----~ll~~~~~~Lg~ 336 (938)
T KOG1077|consen 262 LRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEP-----ELLSRAVNQLGQ 336 (938)
T ss_pred HHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcH-----HHHHHHHHHHHH
Confidence 99999995 345555555555555544 2333 789999999999998653 456788899999
Q ss_pred hhcCCCchhHHHHHHHHHHHHhhCCC--cccccccEEE-Ec-cCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcC
Q 003201 310 LVSSGSPEQSYAVLSHLHILVMRAPF--IFASDYKHFY-CQ-YNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANV 385 (840)
Q Consensus 310 lLss~~~nirY~aL~~l~~l~~~~p~--~~~~~~~~f~-c~-~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~ 385 (840)
||+++++|+||++|+.+.+++...+. .+++|...++ .+ .+.|.+||++++|+||+||+.+|+++||+||+.|+...
T Consensus 337 fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL~tA 416 (938)
T KOG1077|consen 337 FLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLETA 416 (938)
T ss_pred HhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhc
Confidence 99999999999999999999988664 5677776544 33 48889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcC-ChHHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchhHHHHHHhhh-cccCCchH
Q 003201 386 DIPIARESIRAVGKIALQQY-DVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSIS-SQNVQEPK 463 (840)
Q Consensus 386 d~~~~~~~i~aI~~la~k~~-~~~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~~~~l~~l~-~~~i~~~~ 463 (840)
|..++++++.+++.+|+||+ |.+||||++++||+..|+|+.+|+|.++.+|+.++++++.++..-+.+++ ...+++.-
T Consensus 417 d~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~m 496 (938)
T KOG1077|consen 417 DYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENM 496 (938)
T ss_pred chHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999997 88999999999999999999999999999999999999998876554443 45667766
Q ss_pred HHHHHHHHHcCcCCCCCC-----hHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCChhHHHHHHHHHHhhccCCChH
Q 003201 464 AKAALIWMLGEYSQDMQD-----APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQD 538 (840)
Q Consensus 464 ak~a~iwilGEy~~~i~~-----~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~~~~l~~vL~~~~~d~d~d 538 (840)
+|++ .||+||||++|.+ +...+..+.++|+..+ +.+|+.+||+.+|++...| |.++.++++|+...+..|+|
T Consensus 497 VKvg-gyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s-~~tr~lLLtTyiKl~nl~P-Ei~~~v~~vFq~~~n~~D~E 573 (938)
T KOG1077|consen 497 VKVG-GYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCS-PVTRALLLTTYIKLINLFP-EIKSNVQKVFQLYSNLIDVE 573 (938)
T ss_pred HHhh-hhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCC-hhHHHHHHHHHHHHHhhCh-hhhHHHHHHHHhhcccCCHH
Confidence 7764 8999999999975 6788999999999998 9999999999999999888 68999999999999889999
Q ss_pred HHhHHHHHHHHccCCHHHHHhhcCCCCCCccccccCCCHHHHHHHHHhhC
Q 003201 539 VHDRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFN 588 (840)
Q Consensus 539 VrdRA~~Y~rLL~~~~~~a~~vv~~~~p~~~~~~~~~~~~~~~~l~~~~~ 588 (840)
+||||+||..|.+...-.+-++|+++|||+. +.++.++.+|-..-+
T Consensus 574 lQqRa~EYLql~k~as~dvL~~vleeMPpF~----er~ssll~kl~~~~~ 619 (938)
T KOG1077|consen 574 LQQRAVEYLQLSKLASTDVLQTVLEEMPPFP----ERESSLLKKLKKKKP 619 (938)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHhhCCCCc----cccchHHHHhhccCC
Confidence 9999999999998764445568899999964 356677777664444
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=100.00 E-value=1.2e-77 Score=704.04 Aligned_cols=495 Identities=35% Similarity=0.557 Sum_probs=441.8
Q ss_pred ChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhH
Q 003201 40 IDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGL 119 (840)
Q Consensus 40 ~~~~kk~~lkKlI~~m~lG~DvS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~L 119 (840)
+.++|+++++|++|++++|+|++++|++|+++++|+|++.||+||||++.|++.+||+++|++|+++|||+|+||++||+
T Consensus 19 ~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~l 98 (526)
T PF01602_consen 19 DISKKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGL 98 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHH
Q 003201 120 ALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSAL 199 (840)
Q Consensus 120 ALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L 199 (840)
|||+||+++++++++.+.+.|.+++.|++|||||+|++|++|+|+.+|+.+... |.+.+.++ +.|+|++|+.+|+.++
T Consensus 99 AL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~l-L~d~~~~V~~~a~~~l 176 (526)
T PF01602_consen 99 ALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQL-LSDKDPSVVSAALSLL 176 (526)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHH-TTHSSHHHHHHHHHHH
T ss_pred HHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhh-ccCCcchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998444 89999998 6999999999999999
Q ss_pred HHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHH--HHHHHHHHHHhccCChHH
Q 003201 200 QEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI--FDIMNLLEDRLQHANGAV 277 (840)
Q Consensus 200 ~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~--~~il~~l~~~L~~~n~aV 277 (840)
.+| +.++.. ...++ +..+++|++.+..++||+|+++++++..|.+.++.+. ..+++.+.+.+++++++|
T Consensus 177 ~~i-~~~~~~-------~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V 247 (526)
T PF01602_consen 177 SEI-KCNDDS-------YKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSV 247 (526)
T ss_dssp HHH-HCTHHH-------HTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-ccCcch-------hhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHH
Confidence 999 322210 00122 3467778887899999999999999999999998888 789999999999999999
Q ss_pred HHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhC-CCcccccccEEEEccCCCHHHHH
Q 003201 278 VLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA-PFIFASDYKHFYCQYNEPSYVKK 356 (840)
Q Consensus 278 vleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~-p~~~~~~~~~f~c~~~dp~~IK~ 356 (840)
+++|+++++++.+..+ ++.++.++|++|++++++|+||++|+.|..|++.+ |.++..+...|++++++|.+||+
T Consensus 248 ~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~ 322 (526)
T PF01602_consen 248 VYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRK 322 (526)
T ss_dssp HHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHH
T ss_pred HHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHH
Confidence 9999999999887532 55678899999999999999999999999999998 55665566777788899999999
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHHhhcC-ChHHHHHHHHHHhhhcCchhhHHHHHHHH
Q 003201 357 LKLEMLTAVANESNTYEIVTELCEYAANV-DIPIARESIRAVGKIALQQY-DVNAIVDRLLQFLEMEKDYVTAEALVLVK 434 (840)
Q Consensus 357 ~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~-d~~~~~~~i~aI~~la~k~~-~~~~~v~~Ll~LL~~~~~~v~~e~v~~i~ 434 (840)
+||++|+.++|++|+..|++||..|+.+. |.+++++++++|+.||.+|+ +..||++++++++..+++++..++|..++
T Consensus 323 ~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~ 402 (526)
T PF01602_consen 323 KALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIR 402 (526)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHH
T ss_pred HHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHH
Confidence 99999999999999999999999999665 89999999999999999998 46899999999999999999999999999
Q ss_pred HHHhhCCCcchhHHHHHHhhhcccCCchHHHHHHHHHHcCcCCCCCC---hHHHHHHHHHhhccCCcHHHHHHHHHHHhH
Q 003201 435 DLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD---APYILESLTENWEEEPSAEVRLHLLTAVMK 511 (840)
Q Consensus 435 ~il~~~p~~~~~~~~~l~~l~~~~i~~~~ak~a~iwilGEy~~~i~~---~~~il~~l~~~~~~e~~~~vk~~lLta~~K 511 (840)
++++++|+.++.++..+.+++ +++.+++++++++|++||||+.+++ ++++++.++++|..++ +.||.++||+++|
T Consensus 403 ~ll~~~~~~~~~~l~~L~~~l-~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~-~~vk~~ilt~~~K 480 (526)
T PF01602_consen 403 DLLSNNPELREKILKKLIELL-EDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEES-PEVKLQILTALAK 480 (526)
T ss_dssp HHHHHSTTTHHHHHHHHHHHH-TSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSH-HHHHHHHHHHHHH
T ss_pred HHhhcChhhhHHHHHHHHHHH-HHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhcccc-HHHHHHHHHHHHH
Confidence 999999999988877777765 4588999999999999999999998 9999999999999998 9999999999999
Q ss_pred HhhcCChh-HH-HHHHHHHHhhcc-CCChHHHhHHHHHHHHccC
Q 003201 512 CFFKRPPE-TQ-KVLGAALAAGLA-DFHQDVHDRALFYHRLLQY 552 (840)
Q Consensus 512 l~~~~p~e-~~-~~l~~vL~~~~~-d~d~dVrdRA~~Y~rLL~~ 552 (840)
++.+.|.+ .+ .+++.+.+.+.+ |.|+||||||+||++||+.
T Consensus 481 l~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~~ 524 (526)
T PF01602_consen 481 LFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLLNS 524 (526)
T ss_dssp HHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHHH
T ss_pred HHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcc
Confidence 99999953 43 566666666664 6799999999999999874
No 6
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-73 Score=641.93 Aligned_cols=528 Identities=17% Similarity=0.229 Sum_probs=446.5
Q ss_pred CCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCCcchHHHHHHHHHHhccCCCchH
Q 003201 19 KGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLA 98 (840)
Q Consensus 19 k~Ei~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG~DvS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~ 98 (840)
+.|.+.||+.+++.. .+..+|++.+.|++|++|+|||.+++..+.+|+++|++|..||+|||+++.+.++++|+.
T Consensus 31 ~kE~a~IRa~ire~~-----~d~~~r~rniaKLlYi~MLGypahFGqieclKLias~~f~dKRiGYLaamLlLdE~qdvl 105 (866)
T KOG1062|consen 31 QKECAAIRASIREPT-----NDPRKRHRNIAKLLYIHMLGYPAHFGQIECLKLIASDNFLDKRIGYLAAMLLLDERQDLL 105 (866)
T ss_pred HHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHHHHHhCCCccchhhHHHHHhcCCCchHHHHHHHHHHHHhccchHHH
Confidence 568899999998732 345789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHH
Q 003201 99 LLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPT 178 (840)
Q Consensus 99 lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~ 178 (840)
+|++|+++|||+++|.+++|+||.++|+|..+||++.+.|.|.++|++++|||||||++|.+|++++.|+.+ +.|++.
T Consensus 106 lLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~--e~f~~~ 183 (866)
T KOG1062|consen 106 LLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV--EHFVIA 183 (866)
T ss_pred HHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH--HHhhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 789999
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhc------------cCChhHHHHHHH
Q 003201 179 LKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK------------EFSEWAQCLVLE 246 (840)
Q Consensus 179 L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~------------~~~~W~Qi~iL~ 246 (840)
-.++ |+|+|+||+.+++..+.|+++.++.. .+..++ +.+. +.+.|+.+. .++||+||+||+
T Consensus 184 ~~~l-L~ek~hGVL~~~l~l~~e~c~~~~~~-l~~fr~----l~~~-lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLr 256 (866)
T KOG1062|consen 184 FRKL-LCEKHHGVLIAGLHLITELCKISPDA-LSYFRD----LVPS-LVKILKQLTNSGYSPEYDVHGISDPFLQIRILR 256 (866)
T ss_pred HHHH-HhhcCCceeeeHHHHHHHHHhcCHHH-HHHHHH----HHHH-HHHHHHHHhcCCCCCccCccCCCchHHHHHHHH
Confidence 9997 79999999999999999999876531 111111 2222 333444332 279999999999
Q ss_pred HHHhcCCCChhHHHHHHH-HHHHHh------ccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhH
Q 003201 247 LVAKYVPLDSNEIFDIMN-LLEDRL------QHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQS 319 (840)
Q Consensus 247 lL~~y~p~~~~e~~~il~-~l~~~L------~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nir 319 (840)
+|+.++..|++ +.++|+ .+.... ++++.||+||||++|+.+.+... +....++.|++||.+++.|+|
T Consensus 257 lLriLGq~d~d-aSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~-----LrvlainiLgkFL~n~d~Nir 330 (866)
T KOG1062|consen 257 LLRILGQNDAD-ASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSG-----LRVLAINILGKFLLNRDNNIR 330 (866)
T ss_pred HHHHhcCCCcc-HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCch-----HHHHHHHHHHHHhcCCcccee
Confidence 99999987754 334443 333332 23568999999999999976532 334578899999999999999
Q ss_pred HHHHHHHHHHHhhCCCcccccc-cEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 003201 320 YAVLSHLHILVMRAPFIFASDY-KHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVG 398 (840)
Q Consensus 320 Y~aL~~l~~l~~~~p~~~~~~~-~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~ 398 (840)
|++|..+.+.++..|..++.|. .++-|+.|.|.+||+++||++|+|+|++|+..+++||++|+...|++|+.+.+.+|.
T Consensus 331 YvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~ 410 (866)
T KOG1062|consen 331 YVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESSDEDFKADIASKIA 410 (866)
T ss_pred eeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999999999999999999997 467799999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcC-ChHHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhC-CCcchhHHH-HHHhhhcc---cCCchHHHHHHHHHH
Q 003201 399 KIALQQY-DVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKY-PQWSHDCIA-VVGSISSQ---NVQEPKAKAALIWML 472 (840)
Q Consensus 399 ~la~k~~-~~~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~-p~~~~~~~~-~l~~l~~~---~i~~~~ak~a~iwil 472 (840)
.+|++|+ +..|++|++++.++.+|++|..++|..+..++.+- ++.+++... +...+.++ .+.++....+++|+|
T Consensus 411 ~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~I 490 (866)
T KOG1062|consen 411 ELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCI 490 (866)
T ss_pred HHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHh
Confidence 9999995 67999999999999999999999999988888877 777776543 22222222 355556688899999
Q ss_pred cCcCCCCCC-----------hH---HHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCChhHHHHHHHHHHhhccCCChH
Q 003201 473 GEYSQDMQD-----------AP---YILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQD 538 (840)
Q Consensus 473 GEy~~~i~~-----------~~---~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~~~~l~~vL~~~~~d~d~d 538 (840)
||||++.-+ .. ++++.+++++.. + ..+|.++|+|++||..+.+. +...+++++..++.+.|.|
T Consensus 491 GEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s-~-~~tk~yal~Al~KLSsr~~s-~~~ri~~lI~~~~~s~~~e 567 (866)
T KOG1062|consen 491 GEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSS-D-STTKGYALTALLKLSSRFHS-SSERIKQLISSYKSSLDTE 567 (866)
T ss_pred hhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccc-h-HHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHhcccccHH
Confidence 999976532 23 445555555433 3 89999999999999999985 3567889999999999999
Q ss_pred HHhHHHHHHHHccCCHHHHHhhcCCCCCCccc
Q 003201 539 VHDRALFYHRLLQYNVSVAERVVNPPKQAVSV 570 (840)
Q Consensus 539 VrdRA~~Y~rLL~~~~~~a~~vv~~~~p~~~~ 570 (840)
+||||++|..|+..+ ..+++.+++.||....
T Consensus 568 lQQRa~E~~~l~~~~-~~lr~siLe~mp~~e~ 598 (866)
T KOG1062|consen 568 LQQRAVEYNALFAKD-KHLRKSILERMPSCED 598 (866)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHhcccCccccc
Confidence 999999999999776 4566788889988753
No 7
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=100.00 E-value=4e-69 Score=623.54 Aligned_cols=560 Identities=29% Similarity=0.463 Sum_probs=479.1
Q ss_pred cHHHHHHH-HHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCCcchHHHHHHHHHHhccCCCchHH
Q 003201 21 EVSDLKSQ-LRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL 99 (840)
Q Consensus 21 Ei~elr~~-L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG~DvS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~l 99 (840)
++++++.. |.+ +++.+|+++|||+|+.|+.|+|||.+|++|+|.+.|.|.++|||+|+||.+|++.+|++++
T Consensus 19 ~~~~~~sg~l~s-------~n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l 91 (757)
T COG5096 19 SVAALSSGRLES-------SNDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL 91 (757)
T ss_pred HHhhhccccccc-------cChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH
Confidence 55555554 544 4558999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHH
Q 003201 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (840)
Q Consensus 100 L~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L 179 (840)
|++|+++||++|+||++||+|||+||.|+.++++++++++|++++.|++|||||+|++|+.|+|+.+|+.+.+.+..+.+
T Consensus 92 LavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l 171 (757)
T COG5096 92 LAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDIL 171 (757)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877788888
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhh-----ccCChhHHHHHHHHHHhcCCC
Q 003201 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI-----KEFSEWAQCLVLELVAKYVPL 254 (840)
Q Consensus 180 ~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l-----~~~~~W~Qi~iL~lL~~y~p~ 254 (840)
..+ +.|.||.|++||+.+|.+|....... . .+ .+.+.+.++ ..+.+|.+..++..|..+.|.
T Consensus 172 ~~l-~~D~dP~Vi~nAl~sl~~i~~e~a~~---------~-~~--~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~ 238 (757)
T COG5096 172 KEL-VADSDPIVIANALASLAEIDPELAHG---------Y-SL--EVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPT 238 (757)
T ss_pred HHH-hhCCCchHHHHHHHHHHHhchhhhhh---------H-HH--HHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCC
Confidence 887 69999999999999999996531110 0 00 111222221 123499999999999999999
Q ss_pred ChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCC
Q 003201 255 DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP 334 (840)
Q Consensus 255 ~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p 334 (840)
++.+...+.+++.+.++|.|++|+..+++.++.+....+.. ..+.+..++|.+++..++..++|+.+.++..+...+|
T Consensus 239 ~~~s~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~--~~~~~~~~~l~~Ll~~~~~~~~~vl~~~~~~~l~~~~ 316 (757)
T COG5096 239 TPDSAEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSN--NLFLISSPPLVTLLAKPESLIQYVLRRNIQIDLEVCS 316 (757)
T ss_pred CCCcHHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhccc--cHHHhhccHHHHHHcCCHHHHHHHHHHhhHHHHHhhH
Confidence 99999999999999999999999999999999987665543 2556677889998887668999999999999999999
Q ss_pred CcccccccEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHhhcCC-hHHHH
Q 003201 335 FIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAAN--VDIPIARESIRAVGKIALQQYD-VNAIV 411 (840)
Q Consensus 335 ~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~--~d~~~~~~~i~aI~~la~k~~~-~~~~v 411 (840)
..|....+.|+|.+++|+|++..|+++++.+++.+|..+++.|+.+|+.+ .|.+++++++++||.++.+.++ +..|+
T Consensus 317 k~~~~~~~~f~~~~~~~i~~~lek~~~~t~l~~~~n~~~~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~~s~~~~~I 396 (757)
T COG5096 317 KLLDKVKKLFLIEYNDDIYIKLEKLDQLTRLADDQNLSQILLELIYYIAENHIDAEMVSEAIKALGDLASKAESSVNDCI 396 (757)
T ss_pred HHHHHHhhhhhhhccchHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999 9999999999999999999864 46799
Q ss_pred HHHHHHhh---hcCchhhHHH-----HHHHH---HHHhhCCCc-chhHHHHHHhhhcccCC----chHHHHHH-----HH
Q 003201 412 DRLLQFLE---MEKDYVTAEA-----LVLVK---DLLRKYPQW-SHDCIAVVGSISSQNVQ----EPKAKAAL-----IW 470 (840)
Q Consensus 412 ~~Ll~LL~---~~~~~v~~e~-----v~~i~---~il~~~p~~-~~~~~~~l~~l~~~~i~----~~~ak~a~-----iw 470 (840)
+.+++++. ..++|+.+|+ |.+++ ++++.+|+- .+.....+..+ ++.++ +|+++.++ +|
T Consensus 397 ~~~lel~~g~~~~~~Yi~~e~~~~~~i~v~r~~~~~lr~l~~~~~~~~~~~l~~~-~e~l~~~~~~P~~k~~~~~~~~~w 475 (757)
T COG5096 397 SELLELLEGVWIRGSYIVQEVRIVDCISVIRISVLVLRILPNEYPKILLRGLYAL-EETLELQSREPRAKSVTDKYLGAW 475 (757)
T ss_pred HHHHHhccchhhccchhhhhhcccceeeeeehhcchhhhcCCcchhhhHHHHHHH-HHHhhccccCcHHHHHHhhhhHHH
Confidence 99999999 8899999998 66666 788998886 33222223332 24444 79999888 99
Q ss_pred HHcCcCCCCCC-hHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCChhHHH----HHHHHHHhhccC-CChHHHhHHH
Q 003201 471 MLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQK----VLGAALAAGLAD-FHQDVHDRAL 544 (840)
Q Consensus 471 ilGEy~~~i~~-~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~~~----~l~~vL~~~~~d-~d~dVrdRA~ 544 (840)
++|||++.+++ .|+.++.++.+|..|+ .+||.+|+++.+|++...+...++ +.+.+++.|... .++|+||||.
T Consensus 476 l~ge~~~~i~r~~~~~l~~~~~~~~~E~-levq~~Il~~svkl~~~~~~~~~~~~~~~d~~v~~~~~~~v~~~DlRDra~ 554 (757)
T COG5096 476 LLGEFSDIIPRLEPELLRIAISNFVDET-LEVQYTILMSSVKLIANSIRKAKQCNSELDQDVLRRCFDYVLVPDLRDRAR 554 (757)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHhCcHhhhhccchhccHHHHHHHhccCChhHHHHHH
Confidence 99999999987 4599999999999999 999999999999999998865444 566889988865 6899999999
Q ss_pred HHHHHccC-CHHHHHhhcCCCCCCccc-------cccCCCHHHHHHHHHhh--CcchhhccCCCcccccC
Q 003201 545 FYHRLLQY-NVSVAERVVNPPKQAVSV-------FADTQSSEIKDRIFDEF--NSLSVVYQKPSYMFTDK 604 (840)
Q Consensus 545 ~Y~rLL~~-~~~~a~~vv~~~~p~~~~-------~~~~~~~~~~~~l~~~~--~tls~vy~k~~~~f~~~ 604 (840)
+||++++. .++.+..+++.++|...+ +..+..+++++.|...| |+++.+|++|+..+...
T Consensus 555 my~~~lst~~~~~s~~i~~e~~~s~~~~~~i~~~~~~~~t~~~l~nl~~~~t~~~l~~~~~~~~~~l~~~ 624 (757)
T COG5096 555 MYSRLLSTPLPEFSDPILCEAKKSNSQFEIILSALLTNQTPELLENLRLDFTLGTLSTIPLKPIFNLRKG 624 (757)
T ss_pred HHHHHhcCCCccccchhhhcccccccchhhhhhhhccccCHHHHHhhhccccccceeccCCCCcccCCCC
Confidence 99999994 568888999988655543 33445666666655555 99999999998776644
No 8
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-60 Score=529.73 Aligned_cols=508 Identities=18% Similarity=0.257 Sum_probs=430.1
Q ss_pred cHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCCcchHHHHHHHHHHhccCCCchHHH
Q 003201 21 EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALL 100 (840)
Q Consensus 21 Ei~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG~DvS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL 100 (840)
-+.|+|+|+++ .+...|.+++.|+.|+.|+|+|+||.-++++.+|+++.+..||.||++...-++.+.|+++|
T Consensus 37 ~l~e~r~E~k~-------~d~~~k~~a~~kl~yl~mlg~d~swa~f~iveVmsssk~~~krigylaa~qSf~~~tdvlmL 109 (877)
T KOG1059|consen 37 CLEEIRQELKS-------DDLNVKSNAVLKLTYLEMLGVDMSWAAFHIVEVMSSSKFQQKRIGYLAASQSFHDDTDVLML 109 (877)
T ss_pred HHHHHHHHhhc-------hhhhhhHHHHHHHHHHHHHcchHHHHhhhhhhhhhhhhhHHHHHhHHHHHHhhcCCccHHHH
Confidence 47899999987 55678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHH
Q 003201 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (840)
Q Consensus 101 ~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~ 180 (840)
++|+++||++++|.+-.|+||..|+++.+|++++.+.++|..+|++..|||||+|++.++|+|..||+.+ ..-+++|.
T Consensus 110 ~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl--r~~FprL~ 187 (877)
T KOG1059|consen 110 TTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL--RPCFPRLV 187 (877)
T ss_pred HHHHHHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH--hhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 55667787
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHH
Q 003201 181 HLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF 260 (840)
Q Consensus 181 ~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~ 260 (840)
+- |.|+||+|+++|++++||+++++|+.+.. + .|.+++|+. ...|+|.-|+||++++.+.|-+|+...
T Consensus 188 Ek-LeDpDp~V~SAAV~VICELArKnPknyL~--------L-AP~ffkllt--tSsNNWmLIKiiKLF~aLtplEPRLgK 255 (877)
T KOG1059|consen 188 EK-LEDPDPSVVSAAVSVICELARKNPQNYLQ--------L-APLFYKLLV--TSSNNWVLIKLLKLFAALTPLEPRLGK 255 (877)
T ss_pred Hh-ccCCCchHHHHHHHHHHHHHhhCCccccc--------c-cHHHHHHHh--ccCCCeehHHHHHHHhhccccCchhhh
Confidence 77 69999999999999999999999986433 2 246888885 567999999999999999999999999
Q ss_pred HHHHHHHHHhccCCh-HHHHHHHHHHHhccC--CCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCcc
Q 003201 261 DIMNLLEDRLQHANG-AVVLSTIKVFLHLTL--SMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIF 337 (840)
Q Consensus 261 ~il~~l~~~L~~~n~-aVvleaik~il~l~~--~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~ 337 (840)
++++.+..++.++.+ +++||||++++.... .+++ +.....-++.-|..|+.++|+|++|++|-.+.+|+..+|..+
T Consensus 256 KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d-~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~V 334 (877)
T KOG1059|consen 256 KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD-HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV 334 (877)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC-cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH
Confidence 999999999988765 589999999987621 1212 111222344557789999999999999999999999999999
Q ss_pred cccccEE-EEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcCCH-HHHHHHHHHHH-HHHhh-cC---ChHHH
Q 003201 338 ASDYKHF-YCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDI-PIARESIRAVG-KIALQ-QY---DVNAI 410 (840)
Q Consensus 338 ~~~~~~f-~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~-~~~~~~i~aI~-~la~k-~~---~~~~~ 410 (840)
+.|...+ -|+.|.|.+||.++||+|+.|+|++|+.+||+.|+.|+...|. .++.+++..|- .|+.. |- +.+||
T Consensus 335 qa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWY 414 (877)
T KOG1059|consen 335 QAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWY 414 (877)
T ss_pred HHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHH
Confidence 9998754 5999999999999999999999999999999999999988776 88888777664 45543 32 56999
Q ss_pred HHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchhHHHHHHhhhcc---------cCCchHHHHHHHHHHcCcCCCCCC
Q 003201 411 VDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQ---------NVQEPKAKAALIWMLGEYSQDMQD 481 (840)
Q Consensus 411 v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~~~~l~~l~~~---------~i~~~~ak~a~iwilGEy~~~i~~ 481 (840)
+.++++|....+..-...+...+.|+..+.|..|+..+..+..++.+ +..-+++..|++||+|||++++.|
T Consensus 415 lsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven 494 (877)
T KOG1059|consen 415 LSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVEN 494 (877)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhC
Confidence 99999999987765666677788999999999998777666655431 123457788899999999999999
Q ss_pred hHHHHHHHHHhhc-cCCcHHHHHHHHHHHhHHhhcC-----Chh----HHHHHHHHHH---hhccCCChHHHhHHHHHHH
Q 003201 482 APYILESLTENWE-EEPSAEVRLHLLTAVMKCFFKR-----PPE----TQKVLGAALA---AGLADFHQDVHDRALFYHR 548 (840)
Q Consensus 482 ~~~il~~l~~~~~-~e~~~~vk~~lLta~~Kl~~~~-----p~e----~~~~l~~vL~---~~~~d~d~dVrdRA~~Y~r 548 (840)
+.++++.+...-. ..+ ..++..++.+++|+|... |.. ...++..++. ....+.|.|||+||.+.+.
T Consensus 495 ~~~~leamlrpr~~~lp-~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~ 573 (877)
T KOG1059|consen 495 PNDTLEAMLRPRSDLLP-GHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVLE 573 (877)
T ss_pred HHHHHHHHhcCccccCc-hHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCccchhHHHHHHHHHH
Confidence 9999999998655 455 899999999999999853 111 1122233333 3445789999999666666
Q ss_pred Hcc
Q 003201 549 LLQ 551 (840)
Q Consensus 549 LL~ 551 (840)
++.
T Consensus 574 li~ 576 (877)
T KOG1059|consen 574 LIR 576 (877)
T ss_pred HHH
Confidence 554
No 9
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-46 Score=419.71 Aligned_cols=429 Identities=22% Similarity=0.338 Sum_probs=369.3
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhh-hccCCCcchHHHHHHHHHHhccCCCc----
Q 003201 22 VSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVM-CSATSDIVLKKMCYLYVGNYAKVNPD---- 96 (840)
Q Consensus 22 i~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG~DvS~lF~~Vi~-l~~S~d~~~KkL~YLyl~~~~~~~~d---- 96 (840)
-.||++.|++ ++++.|.++|||+|+.|..|.+++.++++|++ ++.+.+.++|||.|+||...-+.++|
T Consensus 22 ~~~ik~~Lek-------~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~ 94 (948)
T KOG1058|consen 22 EDEIKEKLEK-------GDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLL 94 (948)
T ss_pred hHHHHHHHhc-------CChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccH
Confidence 4688999997 67789999999999999999999999999998 89999999999999999999988885
Q ss_pred -hHHHHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCc
Q 003201 97 -LALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADF 175 (840)
Q Consensus 97 -l~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~ 175 (840)
-++|++|.++|||+|||++|||..||++|.++.+|+.+.++|.|+.||.|+++||||.|++|+..+|+..-..+ ++.
T Consensus 95 ~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~--pDa 172 (948)
T KOG1058|consen 95 HEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLI--PDA 172 (948)
T ss_pred HHHHHHHHHHhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhc--CCh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999987777 788
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHH---hhccCChhHHHHHHHHHHhcC
Q 003201 176 PPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLN---RIKEFSEWAQCLVLELVAKYV 252 (840)
Q Consensus 176 ~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~---~l~~~~~W~Qi~iL~lL~~y~ 252 (840)
.+.+.+.|+.|.||.+..||+..|..+.+. + .+.+|.. .+..+++-+|..|++++...+
T Consensus 173 peLi~~fL~~e~DpsCkRNAFi~L~~~D~E-----------r-------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~ 234 (948)
T KOG1058|consen 173 PELIESFLLTEQDPSCKRNAFLMLFTTDPE-----------R-------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVC 234 (948)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHhcCHH-----------H-------HHHHHHhhHhhccCccHHHHHHHHHHHHHHH
Confidence 999999988999999999999999887431 1 2445554 466788999999999999999
Q ss_pred CCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhh-cCCCchhHHHHHHHHHHHHh
Q 003201 253 PLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLV-SSGSPEQSYAVLSHLHILVM 331 (840)
Q Consensus 253 p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lL-ss~~~nirY~aL~~l~~l~~ 331 (840)
..++.+....+..+..+|++++++|+|||+-.+..+.+... .++++++.++.++ .-++.|++.+.|+.|..+..
T Consensus 235 ~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~-----alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~ 309 (948)
T KOG1058|consen 235 LANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPT-----ALKAAASTYIDLLVKESDNNVKLIVLDRLSELKA 309 (948)
T ss_pred hcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHH-----HHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhh
Confidence 88999999999999999999999999999999988876533 4455666676665 45789999999999999987
Q ss_pred hCCCcccccccEE-EEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHH-hhhcCC------HHHHHHHHHHHHHHHhh
Q 003201 332 RAPFIFASDYKHF-YCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCE-YAANVD------IPIARESIRAVGKIALQ 403 (840)
Q Consensus 332 ~~p~~~~~~~~~f-~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~-y~~~~d------~~~~~~~i~aI~~la~k 403 (840)
.+.++++...-.| =.+...|..+|++.|++...|+...|+++|+.-|.. .....+ ..+|+.++++|..||.+
T Consensus 310 ~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~ 389 (948)
T KOG1058|consen 310 LHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVK 389 (948)
T ss_pred hhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhc
Confidence 7777777654333 345677789999999999999999999999998874 433322 46899999999999999
Q ss_pred cCChH-HHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchhHHHHHHhhhcccCCchHHHHHHHHHHcCcCCCCCCh
Q 003201 404 QYDVN-AIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDA 482 (840)
Q Consensus 404 ~~~~~-~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~~~~l~~l~~~~i~~~~ak~a~iwilGEy~~~i~~~ 482 (840)
||+++ ..|..++++|+..++.-...++..++..+.++|+++..++..+-.- .+.+..+.+-.+++||+|||++-..+.
T Consensus 390 Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~-~~~irS~ki~rgalwi~GeYce~~~~i 468 (948)
T KOG1058|consen 390 FPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLET-FPQIRSSKICRGALWILGEYCEGLSEI 468 (948)
T ss_pred ChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHh-hhhhcccccchhHHHHHHHHHhhhHHH
Confidence 99974 5899999999998888889999999999999999997665433221 145677777778899999999866543
Q ss_pred H
Q 003201 483 P 483 (840)
Q Consensus 483 ~ 483 (840)
.
T Consensus 469 ~ 469 (948)
T KOG1058|consen 469 Q 469 (948)
T ss_pred H
Confidence 3
No 10
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.9e-38 Score=353.71 Aligned_cols=495 Identities=16% Similarity=0.260 Sum_probs=423.1
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCC-----CccchhhhhhhhccCCCcchHHHHHHHHHHhccCCCc
Q 003201 22 VSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGI-----DVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPD 96 (840)
Q Consensus 22 i~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG~-----DvS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~d 96 (840)
++|.| -|.+ .|=+..+++.++.|++|+..+|+ ++..+|+.|.|+++++|..+||++|+++..+.....|
T Consensus 24 lqe~r-~fne-----spvn~r~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~ised 97 (865)
T KOG1078|consen 24 LQEAR-TFNE-----SPVNPRKCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISED 97 (865)
T ss_pred HHHHH-hhcC-----CCCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchh
Confidence 45555 5544 23344788999999999999995 5677899999999999999999999999999988777
Q ss_pred hHHHHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCch
Q 003201 97 LALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFP 176 (840)
Q Consensus 97 l~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~ 176 (840)
+ +++++++.||.+..++.+|+.|||+||.|-...+...+...++.+..|++|.|+..|...-++++..+++.+ ..|.
T Consensus 98 v-iivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~v--krw~ 174 (865)
T KOG1078|consen 98 V-IIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVV--KRWA 174 (865)
T ss_pred h-hhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHH--HHHH
Confidence 6 899999999999999999999999999999999999999999999999999999999999999999999998 6799
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhc---cCChhHHHHHHHHHHhcCC
Q 003201 177 PTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK---EFSEWAQCLVLELVAKYVP 253 (840)
Q Consensus 177 ~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~---~~~~W~Qi~iL~lL~~y~p 253 (840)
+.+... ..+.|.+|..+|+.+|+.|.+++ + . .+.+++..+. -.++...|.+++......-
T Consensus 175 neiqea-~~s~~~m~QyHalglLyqirk~d----------r-l-----a~sklv~~~~~~~~~~~~A~~~lir~~~~~l~ 237 (865)
T KOG1078|consen 175 NEVQEA-VNSDNIMVQYHALGLLYQIRKND----------R-L-----AVSKLVQKFTRGSLKSPLAVCMLIRIASELLK 237 (865)
T ss_pred Hhhhhc-cCcHHHHHHHHHHHHHHHHHhhh----------H-H-----HHHHHHHHHccccccchhHHHHHHHHHHHHhh
Confidence 999998 57888899999999999996532 1 1 2344444332 3689999999999888776
Q ss_pred CChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhC
Q 003201 254 LDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA 333 (840)
Q Consensus 254 ~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~ 333 (840)
.++.-..-+...++.+|+|..-+|++||++.+..+...... .+......|..|+++..+-+||.+.+.|+++++.+
T Consensus 238 ~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r----~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~ 313 (865)
T KOG1078|consen 238 ENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR----ELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKH 313 (865)
T ss_pred hcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHh----hcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhC
Confidence 66444445678889999999999999999999998754322 23346677888999999999999999999999999
Q ss_pred CCcc---cccccEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCh-HH
Q 003201 334 PFIF---ASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-NA 409 (840)
Q Consensus 334 p~~~---~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~-~~ 409 (840)
|..+ ..+++.+.- +...+|...|+-.|++-.+++|++.+++.+..++.+.+.+|+.-+|.+|..++.+||.. ..
T Consensus 314 P~~v~~cN~elE~lIt--d~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~ 391 (865)
T KOG1078|consen 314 PQAVTVCNLDLESLIT--DSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTV 391 (865)
T ss_pred CccccccchhHHhhhc--ccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHH
Confidence 9754 345555543 33367999999999999999999999999999999999999999999999999999954 45
Q ss_pred HHHHHHHHhhhcCc-hhhHHHHHHHHHHHhhCCCcchhHHHHHHhhhcccCCchHHHHHHHHHHcCcCCCCCChHHHHHH
Q 003201 410 IVDRLLQFLEMEKD-YVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILES 488 (840)
Q Consensus 410 ~v~~Ll~LL~~~~~-~v~~e~v~~i~~il~~~p~~~~~~~~~l~~l~~~~i~~~~ak~a~iwilGEy~~~i~~~~~il~~ 488 (840)
+++.|-.+|...|. .....++.+|.+++..+|+..+..+..||.++ ++++.+..-.-+..++|.-|...+++..+++.
T Consensus 392 ~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefI-EDce~~~i~~rILhlLG~EgP~a~~Pskyir~ 470 (865)
T KOG1078|consen 392 MMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFI-EDCEFTQIAVRILHLLGKEGPKAPNPSKYIRF 470 (865)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH-HhccchHHHHHHHHHHhccCCCCCCcchhhHH
Confidence 78888888877664 35667788999999999999988888899887 45777776667899999999999999999999
Q ss_pred HHHhhccCCcHHHHHHHHHHHhHHhhcCChhHHHHHHHHHHhhccCCChHHHhHHHHHHHHcc
Q 003201 489 LTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALFYHRLLQ 551 (840)
Q Consensus 489 l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~~~~l~~vL~~~~~d~d~dVrdRA~~Y~rLL~ 551 (840)
++++...|+ ..||++.++|++|+....+ ..++-+..+|+.|.+|.|.||||||.+|.+.+.
T Consensus 471 iyNRviLEn-~ivRaaAv~alaKfg~~~~-~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 471 IYNRVILEN-AIVRAAAVSALAKFGAQDV-VLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred Hhhhhhhhh-hhhHHHHHHHHHHHhcCCC-CccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 999999999 9999999999999985554 356678899999999999999999999999887
No 11
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.9e-34 Score=315.05 Aligned_cols=508 Identities=15% Similarity=0.186 Sum_probs=422.9
Q ss_pred CCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCC-----CccchhhhhhhhccCCCcchHHHHHHHHHHhccC
Q 003201 19 KGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGI-----DVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKV 93 (840)
Q Consensus 19 k~Ei~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG~-----DvS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~ 93 (840)
+.=.++.+..|.+ +|-...+.+.++.++.|+...|+ .+..+|+.+.|+++++|..+|+-+|+++..+..-
T Consensus 21 ~t~~qd~~~sfn~-----Spvs~r~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~ 95 (898)
T COG5240 21 RTLLQDMNESFNK-----SPVSTRSARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKL 95 (898)
T ss_pred HHHHHHHHHHhcc-----CCCChHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhc
Confidence 3345566666654 22233678999999999999997 4566899999999999999999999999999988
Q ss_pred CCchHHHHHHHHHhhcCCCCh-hhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccC
Q 003201 94 NPDLALLTINFLQRDCKDEDP-MIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCID 172 (840)
Q Consensus 94 ~~dl~lL~iNtl~KDl~~~Np-~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~ 172 (840)
..|+ +|.+|+++||++..-| .+|..|+|+|-++...+++......+..+..|+++-+|..|+...++++-.+-+.+
T Consensus 96 tedv-lm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~-- 172 (898)
T COG5240 96 TEDV-LMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQT-- 172 (898)
T ss_pred chhh-hHHHHHHHHhhccCCccccccHHHHHHHHhcCcchhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHH--
Confidence 7776 9999999999999877 99999999999999999999999999999999999999999988888887777766
Q ss_pred CCchHHHHHHHhc---------------CCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCC
Q 003201 173 ADFPPTLKHLMLN---------------DPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFS 237 (840)
Q Consensus 173 ~~~~~~L~~lLL~---------------D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~ 237 (840)
..|.+...+..++ ..+|.-..+|+.+|+.+.+++. ....+ .++++.....-.|
T Consensus 173 ~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dk-----------ma~lk-lv~hf~~n~smkn 240 (898)
T COG5240 173 KRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDK-----------MAQLK-LVEHFRGNASMKN 240 (898)
T ss_pred HHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccH-----------HHHHH-HHHHhhccccccc
Confidence 6687766665321 1356778899999999865432 11111 3444444444456
Q ss_pred hhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCch
Q 003201 238 EWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPE 317 (840)
Q Consensus 238 ~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~n 317 (840)
...-+.+++.......++++....+...+...|++...+|.+|++|.++.+.... +..+.+...+..|.+||++...-
T Consensus 241 q~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~~~vs~L~~fL~s~rv~ 318 (898)
T COG5240 241 QLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN--VGSQFVDQTVSSLRTFLKSTRVV 318 (898)
T ss_pred chhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHhcchHH
Confidence 7778888888888777787777777778888888888999999999999875321 33455666788899999988888
Q ss_pred hHHHHHHHHHHHHhhCCCcc---cccccEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcCCHHHHHHHH
Q 003201 318 QSYAVLSHLHILVMRAPFIF---ASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESI 394 (840)
Q Consensus 318 irY~aL~~l~~l~~~~p~~~---~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i 394 (840)
.||.|+|.|++|++.+|..+ .++++.+.- |....|...++--|.+-.+++|+..+++.+-.|+.+..+.|+.-+|
T Consensus 319 ~rFsA~Riln~lam~~P~kv~vcN~evEsLIs--d~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~i 396 (898)
T COG5240 319 LRFSAMRILNQLAMKYPQKVSVCNKEVESLIS--DENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAI 396 (898)
T ss_pred HHHHHHHHHHHHHhhCCceeeecChhHHHHhh--cccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeH
Confidence 99999999999999999743 345554443 3445689999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCh-HHHHHHHHHHhhhcCc-hhhHHHHHHHHHHHhhCCCcchhHHHHHHhhhcccCCchHHHHHHHHHH
Q 003201 395 RAVGKIALQQYDV-NAIVDRLLQFLEMEKD-YVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWML 472 (840)
Q Consensus 395 ~aI~~la~k~~~~-~~~v~~Ll~LL~~~~~-~v~~e~v~~i~~il~~~p~~~~~~~~~l~~l~~~~i~~~~ak~a~iwil 472 (840)
.+|..++.+||.. ..|++.|...|...|+ .+...++.++.+++...|+..+.+++.||.++ ++|+.++....++.|+
T Consensus 397 da~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fI-EDcey~~I~vrIL~iL 475 (898)
T COG5240 397 DALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFI-EDCEYHQITVRILGIL 475 (898)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHH-hhcchhHHHHHHHHHh
Confidence 9999999999953 4589999888777665 47788889999999999999999999999987 6789999988899999
Q ss_pred cCcCCCCCChHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCCh-hHHHHHHHHHHhhccCCChHHHhHHHHHHHHcc
Q 003201 473 GEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPP-ETQKVLGAALAAGLADFHQDVHDRALFYHRLLQ 551 (840)
Q Consensus 473 GEy~~~i~~~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~-e~~~~l~~vL~~~~~d~d~dVrdRA~~Y~rLL~ 551 (840)
|+.|...++|..+.+.++++...|+ ..||.+.+.|+.|+.+.... -.+..+..+|+.|.+|.|.||||||-|..+-+.
T Consensus 476 G~EgP~a~~P~~yvrhIyNR~iLEN-~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 476 GREGPRAKTPGKYVRHIYNRLILEN-NIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cccCCCCCCcchHHHHHHHHHHHhh-hHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999 99999999999999876532 245678899999999999999999999999887
Q ss_pred C
Q 003201 552 Y 552 (840)
Q Consensus 552 ~ 552 (840)
.
T Consensus 555 ~ 555 (898)
T COG5240 555 L 555 (898)
T ss_pred h
Confidence 4
No 12
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=99.91 E-value=1.5e-24 Score=202.96 Aligned_cols=114 Identities=32% Similarity=0.551 Sum_probs=91.1
Q ss_pred eccCCCCChHHHHHHhhccCcccceeeeeCccCccCCCCHHHHHHHhhhcCEEEEeecCCCCceEEEEeeeccCCCceEE
Q 003201 721 LNSKAILDPGTFQQKWRQLPISLSQEFSLSPEGVAALTTPQALLWHMQGHSIHCIASGGHSPNFKFFFFAQKAEESSNFL 800 (840)
Q Consensus 721 L~~~~~l~~~~Fq~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~I~tiAsg~~~~~~k~y~yaq~~~~~~~fL 800 (840)
|.|||+|||++||++|+++|++++.++++..+ ..+.++|+++++|+++||+|||+|..++++++||||++.++|++||
T Consensus 1 f~~d~~~~~~~F~~~W~sl~~~~~~e~~~~~~--~~~~~~~~i~~~L~~~nI~~iA~~~~~~~~~~~y~s~~~~~~~~fL 78 (114)
T PF09066_consen 1 FVEDGSMDPEEFQEMWKSLPDSNQQELSIQLN--ASVPSPDAIEEKLQANNIFTIASGKVDNGQKFFYFSAKTTNGIWFL 78 (114)
T ss_dssp B-TT----HHHHHHHHHHS-GGG--EEEEEET--T----HHHHHHHHHCTT-EEEEEEECTT-EEEEEEEEEBTTS-EEE
T ss_pred CCCCCccCHHHHHHHHHhCCcccceEEEEecc--ccCCcHHHHHHHHHHCCEEEEecCCCCccccEEEEEEEcCCCcEEE
Confidence 67899999999999999999999778877665 2368999999999999999999988888899999999999999999
Q ss_pred EEEEEecCCCceEEEEecCChhhHHHHHHHHHHHHh
Q 003201 801 VECIINTSSAKAQVKIKADDQSTSQAFSDVFQSALS 836 (840)
Q Consensus 801 ~El~i~~~~~~~~~tvKs~~~~~~~~f~~~~~~~l~ 836 (840)
+|++++++++.+++++|++++++++.|.++|+++|+
T Consensus 79 ~El~~~~~~~~~~v~vK~~~~~~~~~f~~~~~~iL~ 114 (114)
T PF09066_consen 79 VELTIDPGSPSVKVTVKSENPEMAPLFLQLFESILK 114 (114)
T ss_dssp EEEEE-TT-SSEEEEEEESSCCCHHHHHHHHHHHCC
T ss_pred EEEEEcCCCccEEEEEecCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999974
No 13
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.35 E-value=6.1e-11 Score=139.64 Aligned_cols=129 Identities=22% Similarity=0.249 Sum_probs=57.1
Q ss_pred ccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCC--hhhhHHH-HHHHHHhccCCCC
Q 003201 72 SATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR--VANLVEY-LVGPLGLGLKDNN 148 (840)
Q Consensus 72 ~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~--~~~i~e~-l~~~v~~~L~d~~ 148 (840)
+.++|...+-++-=+++... .+|++--..+.+.+=+.|++|++|--|+-++.++- .|+.++. +.+.+.++|.|++
T Consensus 88 l~~~n~~~~~lAL~~l~~i~--~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~ 165 (526)
T PF01602_consen 88 LNSPNPYIRGLALRTLSNIR--TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKD 165 (526)
T ss_dssp HCSSSHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSS
T ss_pred hcCCCHHHHHHHHhhhhhhc--ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCc
Confidence 33444444444444444433 34444444444444445555555544444444442 2444443 4444555555555
Q ss_pred hHHHHHHHHHHHHHHhhcCC----cccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhc
Q 003201 149 SYVRTVAVIGVLKLYHISAP----TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (840)
Q Consensus 149 pyVRK~Aala~~kl~~~~p~----~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~ 206 (840)
|-|+..|+.++..+ +..|+ .+ +.+...|.++ +.+.+|-+...++.+|..+.+.+
T Consensus 166 ~~V~~~a~~~l~~i-~~~~~~~~~~~--~~~~~~L~~~-l~~~~~~~q~~il~~l~~~~~~~ 223 (526)
T PF01602_consen 166 PSVVSAALSLLSEI-KCNDDSYKSLI--PKLIRILCQL-LSDPDPWLQIKILRLLRRYAPME 223 (526)
T ss_dssp HHHHHHHHHHHHHH-HCTHHHHTTHH--HHHHHHHHHH-HTCCSHHHHHHHHHHHTTSTSSS
T ss_pred chhHHHHHHHHHHH-ccCcchhhhhH--HHHHHHhhhc-ccccchHHHHHHHHHHHhcccCC
Confidence 55554444444444 21121 12 3344444444 34445554445555554444433
No 14
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.01 E-value=1.4e-06 Score=112.77 Aligned_cols=429 Identities=17% Similarity=0.092 Sum_probs=249.1
Q ss_pred HHHHhhCCChh---hhHHH-HHHHHHhccCCCChHHHHHHHHHHHHHHhhcCC---cccCCCchHHHHHHHhcCCChhHH
Q 003201 120 ALRSLCSLRVA---NLVEY-LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVV 192 (840)
Q Consensus 120 ALr~l~~I~~~---~i~e~-l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~---~~~~~~~~~~L~~lLL~D~d~~Vv 192 (840)
||+.||..... .+++. .++.+.++|.+.+|.++..|+.++.++...+++ .+.+.+.++.|.++|-++.++.|.
T Consensus 170 AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VR 249 (2102)
T PLN03200 170 ALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVR 249 (2102)
T ss_pred HHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHH
Confidence 55555554431 22333 678888999999999999999999888766553 234678899999984235677999
Q ss_pred HHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccC---------Ch-------hHHHHHH-------HHHH
Q 003201 193 ANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEF---------SE-------WAQCLVL-------ELVA 249 (840)
Q Consensus 193 ~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~---------~~-------W~Qi~iL-------~lL~ 249 (840)
-+|+.+|..|+.+++.. . ...+....+..|++.+..+ +. |.-..|- ..|.
T Consensus 250 E~AA~AL~nLAs~s~e~-----r--~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~ 322 (2102)
T PLN03200 250 AEAAGALEALSSQSKEA-----K--QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLG 322 (2102)
T ss_pred HHHHHHHHHHhcCCHHH-----H--HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHH
Confidence 99999999998653321 0 0111111222333222211 01 2222111 1111
Q ss_pred hcC--CCC--------------------hhHHH------HHHHHHHHHhccCChH-------------------------
Q 003201 250 KYV--PLD--------------------SNEIF------DIMNLLEDRLQHANGA------------------------- 276 (840)
Q Consensus 250 ~y~--p~~--------------------~~e~~------~il~~l~~~L~~~n~a------------------------- 276 (840)
... +.+ +.+.. .+...+..+++|.++.
T Consensus 323 ~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~ 402 (2102)
T PLN03200 323 ELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNH 402 (2102)
T ss_pred HhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Confidence 100 000 00000 1123344455555443
Q ss_pred -----------------HHHHHHHHHHhccCCCchhHHHHHHH-HHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCC---
Q 003201 277 -----------------VVLSTIKVFLHLTLSMTDVHQQVYER-IKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF--- 335 (840)
Q Consensus 277 -----------------Vvleaik~il~l~~~~~~~~~~~l~r-l~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~--- 335 (840)
+.-.++..+.++.....+..+.+.++ ..++|+.||.+++.++|..++..+..|+...++
T Consensus 403 ~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~ 482 (2102)
T PLN03200 403 AEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKW 482 (2102)
T ss_pred ccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 33333333333332222222222221 456899999988999999999999888764432
Q ss_pred -ccccc-ccEE-EEccCCCHHHHHHHHHHHHhcc-CCCCHHHHHH------HHHHhhhcCCHHHHHHHHHHHHHHHhhcC
Q 003201 336 -IFASD-YKHF-YCQYNEPSYVKKLKLEMLTAVA-NESNTYEIVT------ELCEYAANVDIPIARESIRAVGKIALQQY 405 (840)
Q Consensus 336 -~~~~~-~~~f-~c~~~dp~~IK~~kLdiL~~L~-n~~Nv~~Iv~------EL~~y~~~~d~~~~~~~i~aI~~la~k~~ 405 (840)
+.... +..+ -++.+.+..+|..+...|..++ ++.|+..++. -|.+.+.+.+...++.+..+|+.+....
T Consensus 483 aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~- 561 (2102)
T PLN03200 483 AITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA- 561 (2102)
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc-
Confidence 11111 1222 1334566789999999999998 4557776553 4678888889999999999999997643
Q ss_pred ChHHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCc--------chhHHHHHHhhhcccCCchHHHHHHHHHHcCcCC
Q 003201 406 DVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQW--------SHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQ 477 (840)
Q Consensus 406 ~~~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~--------~~~~~~~l~~l~~~~i~~~~ak~a~iwilGEy~~ 477 (840)
+ ...+..++.+|......+...++.++..|+.--... ...++..|.+++.. ..++.+..++|+|+.|+.
T Consensus 562 d-~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~s--gs~~ikk~Aa~iLsnL~a 638 (2102)
T PLN03200 562 D-AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSS--SKEETQEKAASVLADIFS 638 (2102)
T ss_pred c-hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcC--CCHHHHHHHHHHHHHHhc
Confidence 2 235577888887776666666777776665422211 11245556666532 356788888999999986
Q ss_pred CCCChH------HHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCChh-HHH-----HHHHHHHhhccCCChHHHhHHHH
Q 003201 478 DMQDAP------YILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPE-TQK-----VLGAALAAGLADFHQDVHDRALF 545 (840)
Q Consensus 478 ~i~~~~------~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e-~~~-----~l~~vL~~~~~d~d~dVrdRA~~ 545 (840)
.-.+.. ..+..++......+ .++|...-.|+.-++.....+ ... .+..+++. ..+.|.++++-|..
T Consensus 639 ~~~d~~~avv~agaIpPLV~LLss~~-~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~L-L~~~d~~v~e~Al~ 716 (2102)
T PLN03200 639 SRQDLCESLATDEIINPCIKLLTNNT-EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKL-AKSSSIEVAEQAVC 716 (2102)
T ss_pred CChHHHHHHHHcCCHHHHHHHHhcCC-hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHH-HhCCChHHHHHHHH
Confidence 433311 12344555555555 778888888888887532211 111 22333333 24678889888888
Q ss_pred HHHHccCCHHHHHhhc
Q 003201 546 YHRLLQYNVSVAERVV 561 (840)
Q Consensus 546 Y~rLL~~~~~~a~~vv 561 (840)
-...+-.+++.+..+.
T Consensus 717 ALanLl~~~e~~~ei~ 732 (2102)
T PLN03200 717 ALANLLSDPEVAAEAL 732 (2102)
T ss_pred HHHHHHcCchHHHHHH
Confidence 7655555555554444
No 15
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.98 E-value=9.3e-08 Score=119.53 Aligned_cols=56 Identities=27% Similarity=0.236 Sum_probs=25.7
Q ss_pred HHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Q 003201 103 NFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKL 162 (840)
Q Consensus 103 Ntl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl 162 (840)
+.|..-|.|++|.+|-.|+..|+.+..++. .+.|.+.|.|+++.||..|+-++.++
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~----~~~L~~aL~D~d~~VR~~Aa~aL~~l 679 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPGF----GPALVAALGDGAAAVRRAAAEGLREL 679 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchhH----HHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 344444445555555555555555444332 22233344455555555554444443
No 16
>PRK09687 putative lyase; Provisional
Probab=98.96 E-value=3.7e-08 Score=106.58 Aligned_cols=240 Identities=13% Similarity=0.034 Sum_probs=142.1
Q ss_pred HHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHH
Q 003201 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (840)
Q Consensus 100 L~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L 179 (840)
+.++.|.+=|.|+|..+|..|+..|+.++.+++.+. +.+++.|+++.||+.|+-++..+-..... .....+.|
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~----l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~~~L 95 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGGQDVFRL----AIELCSSKNPIERDIGADILSQLGMAKRC---QDNVFNIL 95 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHH----HHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHHHHH
Confidence 345667777899999999999999999998765555 55678899999999999999987442110 13456777
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHH
Q 003201 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI 259 (840)
Q Consensus 180 ~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~ 259 (840)
..++++|+|+.|..+|+.+|-+++..... | .
T Consensus 96 ~~l~~~D~d~~VR~~A~~aLG~~~~~~~~------------------------------~-------------------~ 126 (280)
T PRK09687 96 NNLALEDKSACVRASAINATGHRCKKNPL------------------------------Y-------------------S 126 (280)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcccccccc------------------------------c-------------------c
Confidence 77657999999999999999887432110 0 0
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCcccc
Q 003201 260 FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFAS 339 (840)
Q Consensus 260 ~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~ 339 (840)
...++.+...+.+.+.-|-+.++..+..+.. .....+|+.+|.++++.+|+.+...|..+-...|..+..
T Consensus 127 ~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~ 196 (280)
T PRK09687 127 PKIVEQSQITAFDKSTNVRFAVAFALSVIND----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREA 196 (280)
T ss_pred hHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 0122334444555566666666666654432 124455666666666677777666666541112211111
Q ss_pred cccEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhh
Q 003201 340 DYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLE 419 (840)
Q Consensus 340 ~~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~~~~v~~Ll~LL~ 419 (840)
= +-.+.|.+..||..++.-|-.+-++ ..+.-|..++.+.+ ++..++.++|.++.. ..+..|.+++.
T Consensus 197 L---~~~L~D~~~~VR~~A~~aLg~~~~~----~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-----~a~p~L~~l~~ 262 (280)
T PRK09687 197 F---VAMLQDKNEEIRIEAIIGLALRKDK----RVLSVLIKELKKGT--VGDLIIEAAGELGDK-----TLLPVLDTLLY 262 (280)
T ss_pred H---HHHhcCCChHHHHHHHHHHHccCCh----hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-----hHHHHHHHHHh
Confidence 0 0011333445555555555554443 23333333433333 455666666666543 34555555554
No 17
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.96 E-value=1.6e-08 Score=102.32 Aligned_cols=146 Identities=20% Similarity=0.256 Sum_probs=112.4
Q ss_pred ChhhHhHHHHHhh--CCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChh
Q 003201 113 DPMIRGLALRSLC--SLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQ 190 (840)
Q Consensus 113 Np~ir~LALr~l~--~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~ 190 (840)
||.+|+.|+.+|| +++-+.+++...+.+.++|.|++|+|||.|++++.++...+.-.+. ..+...+..+ +.|+|+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k-~~l~~~~l~~-l~D~~~~ 78 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK-GQLFSRILKL-LVDENPE 78 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh-hhhhHHHHHH-HcCCCHH
Confidence 7899999999999 6788999999999999999999999999999999999988766653 3333444455 5999999
Q ss_pred HHHHHHHHHHHHHhh-ccCcchHHHHHHHhhccHHHHHHHHHhhccCChhH---------HHHHHHHHHhcCCCChhHHH
Q 003201 191 VVANCLSALQEIWSL-EASTSEEASREREALISKPVIYYLLNRIKEFSEWA---------QCLVLELVAKYVPLDSNEIF 260 (840)
Q Consensus 191 Vv~~al~~L~eI~~~-~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~---------Qi~iL~lL~~y~p~~~~e~~ 260 (840)
|...|...|.++..+ +|.. + .+.+..++..++.+.+|. ...|++++..+... ++..+
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~-----------i-~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-d~~~~ 145 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNI-----------I-YNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-DKQKE 145 (178)
T ss_pred HHHHHHHHHHHHHHhccchH-----------H-HHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc-HHHHH
Confidence 999999999999876 3321 1 124556666677776664 45788888777654 45566
Q ss_pred HHHHHHHHHhccC
Q 003201 261 DIMNLLEDRLQHA 273 (840)
Q Consensus 261 ~il~~l~~~L~~~ 273 (840)
.+++.+..++.+.
T Consensus 146 ~l~~kl~~~~~~~ 158 (178)
T PF12717_consen 146 SLVEKLCQRFLNA 158 (178)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776665544
No 18
>PTZ00429 beta-adaptin; Provisional
Probab=98.95 E-value=3.9e-06 Score=101.52 Aligned_cols=406 Identities=14% Similarity=0.120 Sum_probs=238.4
Q ss_pred hcCCCChhhHhHHHHHhhCCC--hhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhc
Q 003201 108 DCKDEDPMIRGLALRSLCSLR--VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLN 185 (840)
Q Consensus 108 Dl~~~Np~ir~LALr~l~~I~--~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~ 185 (840)
=+.++|..+|-+.--.+.++. .++++-..+..+++-+.|++|+||--|+-++.++ ..|+.+ +.+.+.++++ +.
T Consensus 76 ~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~I--r~~~i~--e~l~~~lkk~-L~ 150 (746)
T PTZ00429 76 LAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCI--RVSSVL--EYTLEPLRRA-VA 150 (746)
T ss_pred HhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC--CcHHHH--HHHHHHHHHH-hc
Confidence 456778888877655554443 3777778899999999999999999998888765 335555 4466778888 69
Q ss_pred CCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHH---HHH
Q 003201 186 DPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI---FDI 262 (840)
Q Consensus 186 D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~---~~i 262 (840)
|++|-|.-+|+.++..+.+.+|+.. . ....+.+|...+.+.++-.+...+.+|......+++.. ...
T Consensus 151 D~~pYVRKtAalai~Kly~~~pelv----~------~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~ 220 (746)
T PTZ00429 151 DPDPYVRKTAAMGLGKLFHDDMQLF----Y------QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEW 220 (746)
T ss_pred CCCHHHHHHHHHHHHHHHhhCcccc----c------ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 9999999999999999887666421 1 11124455556789999999999999888765544322 233
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhC-CCccccc-
Q 003201 263 MNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA-PFIFASD- 340 (840)
Q Consensus 263 l~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~-p~~~~~~- 340 (840)
+..+...|...+.=-....++++..+.+....-. ..+...+...|++.++-+.|-+.+.+..+.... |.++..-
T Consensus 221 ~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~ 296 (746)
T PTZ00429 221 VNRLVYHLPECNEWGQLYILELLAAQRPSDKESA----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCT 296 (746)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHH
Confidence 3344444444454334445555555554332221 234444556677777777777777766654321 2221110
Q ss_pred --c-c-EEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHH-hhhcCCH-HHHHHHHHHHHHHHhhcCChHHHHHHH
Q 003201 341 --Y-K-HFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCE-YAANVDI-PIARESIRAVGKIALQQYDVNAIVDRL 414 (840)
Q Consensus 341 --~-~-~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~-y~~~~d~-~~~~~~i~aI~~la~k~~~~~~~v~~L 414 (840)
+ . .++.. +.+..+|...|+-|..++... -..+..++.. |+.-.|+ .++...+.-+-.+|.. .++..+++-|
T Consensus 297 ~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~-P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane-~Nv~~IL~EL 373 (746)
T PTZ00429 297 VRVNTALLTLS-RRDAETQYIVCKNIHALLVIF-PNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTP-SVAPEILKEL 373 (746)
T ss_pred HHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHC-HHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCc-ccHHHHHHHH
Confidence 1 0 01222 233346666665555544322 2222333332 3444454 3555566666555532 1344566666
Q ss_pred HHHhhhcCchhhHHHHHHHHHHHhhCCCcchhHHHHHHhhhcccCC-chHHHHHHHHHHcCcCCCCCChHHHHHHHHHhh
Q 003201 415 LQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQ-EPKAKAALIWMLGEYSQDMQDAPYILESLTENW 493 (840)
Q Consensus 415 l~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~~~~l~~l~~~~i~-~~~ak~a~iwilGEy~~~i~~~~~il~~l~~~~ 493 (840)
.+........++.+++..|..+..++|...+.|+..+.+++..... -.++..++--|+-.|.+. .++..+++.+
T Consensus 374 ~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~~v~e~i~vik~IlrkyP~~-----~il~~L~~~~ 448 (746)
T PTZ00429 374 AEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPELLPQVVTAAKDIVRKYPEL-----LMLDTLVTDY 448 (746)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHCccH-----HHHHHHHHhh
Confidence 6666555557888999999999999999888888887777643211 123444455555556542 2455555544
Q ss_pred --ccCCcHHHHHHHHHHHhHHhhcCChhHHHHHHHHHHhhccCCChHHHhH
Q 003201 494 --EEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDR 542 (840)
Q Consensus 494 --~~e~~~~vk~~lLta~~Kl~~~~p~e~~~~l~~vL~~~~~d~d~dVrdR 542 (840)
.....++.|..++=-+.-+.-.-+ .+.+.+..+++... +.+++||--
T Consensus 449 ~~~~i~e~~AKaaiiWILGEy~~~I~-~a~~~L~~~i~~f~-~E~~~Vqlq 497 (746)
T PTZ00429 449 GADEVVEEEAKVSLLWMLGEYCDFIE-NGKDIIQRFIDTIM-EHEQRVQLA 497 (746)
T ss_pred cccccccHHHHHHHHHHHHhhHhhHh-hHHHHHHHHHhhhc-cCCHHHHHH
Confidence 222227788775444444322222 23345544443322 346777543
No 19
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.87 E-value=4e-07 Score=113.96 Aligned_cols=256 Identities=17% Similarity=0.131 Sum_probs=163.2
Q ss_pred hhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHH
Q 003201 115 MIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVAN 194 (840)
Q Consensus 115 ~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~ 194 (840)
..|=+|+..+ ..+ ..+.+...|.|++|.||+.|+.++.++.. ++.++.|..+ |+|+|+.|...
T Consensus 609 ~~~~~~~~~l---~~~-----~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~a-L~D~d~~VR~~ 671 (897)
T PRK13800 609 SPRILAVLAL---DAP-----SVAELAPYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAA-LGDGAAAVRRA 671 (897)
T ss_pred hHHHHHHHhc---cch-----hHHHHHHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHH-HcCCCHHHHHH
Confidence 3444555555 222 34466777899999999999999998642 3456788887 69999999999
Q ss_pred HHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCC
Q 003201 195 CLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHAN 274 (840)
Q Consensus 195 al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~n 274 (840)
|+.+|.++....+. ...|...+.+.+++.+..+++.|......+. ..+...|+..+
T Consensus 672 Aa~aL~~l~~~~~~-----------------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-------~~l~~~L~D~d 727 (897)
T PRK13800 672 AAEGLRELVEVLPP-----------------APALRDHLGSPDPVVRAAALDVLRALRAGDA-------ALFAAALGDPD 727 (897)
T ss_pred HHHHHHHHHhccCc-----------------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCH-------HHHHHHhcCCC
Confidence 99999888532110 1234445667899999999999987654432 23455788888
Q ss_pred hHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCcccccccEEEEccCCCHHH
Q 003201 275 GAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYV 354 (840)
Q Consensus 275 ~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~c~~~dp~~I 354 (840)
+.|-.+|++.+..+... ..|..++.+.++++|..+...|..+-...+..+..- . -...|++..|
T Consensus 728 ~~VR~~Av~aL~~~~~~-------------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L-~--~ll~D~d~~V 791 (897)
T PRK13800 728 HRVRIEAVRALVSVDDV-------------ESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAV-R--ALTGDPDPLV 791 (897)
T ss_pred HHHHHHHHHHHhcccCc-------------HHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHH-H--HHhcCCCHHH
Confidence 99999999988776321 124567888889999988888877654333111110 0 1123445667
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCchhhHHHHHHHH
Q 003201 355 KKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVK 434 (840)
Q Consensus 355 K~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~~~~v~~Ll~LL~~~~~~v~~e~v~~i~ 434 (840)
|..++.-|-.+.++..+ +..|...+.+.|..+|..++.+++.+.-. ..++.|+.+|......|..+++..+.
T Consensus 792 R~aA~~aLg~~g~~~~~---~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-----~a~~~L~~~L~D~~~~VR~~A~~aL~ 863 (897)
T PRK13800 792 RAAALAALAELGCPPDD---VAAATAALRASAWQVRQGAARALAGAAAD-----VAVPALVEALTDPHLDVRKAAVLALT 863 (897)
T ss_pred HHHHHHHHHhcCCcchh---HHHHHHHhcCCChHHHHHHHHHHHhcccc-----chHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 77777777666554322 23345555666666777777777654311 23455555555444444444444443
Q ss_pred H
Q 003201 435 D 435 (840)
Q Consensus 435 ~ 435 (840)
.
T Consensus 864 ~ 864 (897)
T PRK13800 864 R 864 (897)
T ss_pred c
Confidence 3
No 20
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.84 E-value=4.8e-06 Score=108.06 Aligned_cols=247 Identities=13% Similarity=0.052 Sum_probs=177.4
Q ss_pred hhhccCCCcchHHHHHHHHHHhccCCCchHH-----HHHHHHHhhcCCCChhhHhHHHHHhhCCCh--hhhH-----HHH
Q 003201 69 VMCSATSDIVLKKMCYLYVGNYAKVNPDLAL-----LTINFLQRDCKDEDPMIRGLALRSLCSLRV--ANLV-----EYL 136 (840)
Q Consensus 69 i~l~~S~d~~~KkL~YLyl~~~~~~~~dl~l-----L~iNtl~KDl~~~Np~ir~LALr~l~~I~~--~~i~-----e~l 136 (840)
|.++.+.+...+.=.-..+..+...+.+... ..++.|.+=|.++++.++-.|++++++|.. ++-. .-.
T Consensus 410 V~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGa 489 (2102)
T PLN03200 410 VGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGG 489 (2102)
T ss_pred hhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 4455555556655555566666655555422 357889999999999999999999988742 3322 245
Q ss_pred HHHHHhccCCCChHHHHHHHHHHHHHHhhcCC---cccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHH
Q 003201 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEA 213 (840)
Q Consensus 137 ~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~---~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~ 213 (840)
++++.++|.++++.+|+-|+-++..+-...++ .+.+.+.++.|.++ |++.++.+..+|+.+|..+.....
T Consensus 490 IP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~L-L~sgd~~~q~~Aa~AL~nLi~~~d------ 562 (2102)
T PLN03200 490 IPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWL-LKNGGPKGQEIAAKTLTKLVRTAD------ 562 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHH-HhCCCHHHHHHHHHHHHHHHhccc------
Confidence 88999999999999999999999998764332 23346778888887 688999999999999999875321
Q ss_pred HHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCC-CChhH-------HHHHHHHHHHHhccCChHHHHHHHHHH
Q 003201 214 SREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVP-LDSNE-------IFDIMNLLEDRLQHANGAVVLSTIKVF 285 (840)
Q Consensus 214 ~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p-~~~~e-------~~~il~~l~~~L~~~n~aVvleaik~i 285 (840)
...+..|+..+...++=.+..+++.+..... .+.++ ...-++.+..+|+|.+..+.-.|+.++
T Consensus 563 ---------~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iL 633 (2102)
T PLN03200 563 ---------AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVL 633 (2102)
T ss_pred ---------hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1123445555555666667778888866532 12221 124578889999999999999999999
Q ss_pred HhccCCCchhHHH-HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 003201 286 LHLTLSMTDVHQQ-VYERIKAPLLTLVSSGSPEQSYAVLSHLHILVM 331 (840)
Q Consensus 286 l~l~~~~~~~~~~-~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~ 331 (840)
..+....++.... +....++||+.+|++++.+++.-+-..|..+..
T Consensus 634 snL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~ 680 (2102)
T PLN03200 634 ADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSR 680 (2102)
T ss_pred HHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 9887766654333 334578899999999888888888777776663
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.83 E-value=1.2e-05 Score=94.45 Aligned_cols=393 Identities=19% Similarity=0.216 Sum_probs=247.6
Q ss_pred hhhccCCCcchHHHHHHHHHHhccC-CCch-HHHHHHHHHhhcCCCChhhHhHHHHHhhCCCh-h-h-----hHHHHHHH
Q 003201 69 VMCSATSDIVLKKMCYLYVGNYAKV-NPDL-ALLTINFLQRDCKDEDPMIRGLALRSLCSLRV-A-N-----LVEYLVGP 139 (840)
Q Consensus 69 i~l~~S~d~~~KkL~YLyl~~~~~~-~~dl-~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~-~-~-----i~e~l~~~ 139 (840)
..++++++-+.--++--.+..++.. .++- .--....+++-|.++||.+|.+|++.++++.. . . .-..+++.
T Consensus 44 f~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~ 123 (503)
T PF10508_consen 44 FDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPL 123 (503)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHH
Confidence 3566666544444433334444432 3332 33556788999999999999999999988632 2 2 12567888
Q ss_pred HHhccCCCChHHHHHHHHHHHHHHhhcCCc--ccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHH
Q 003201 140 LGLGLKDNNSYVRTVAVIGVLKLYHISAPT--CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRER 217 (840)
Q Consensus 140 v~~~L~d~~pyVRK~Aala~~kl~~~~p~~--~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~ 217 (840)
|..++.|++..|.+.|+-++.++.+..+.. +.+++....|.+++ ...|..|...++.++.+|+..++... +.
T Consensus 124 i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~~-~~---- 197 (503)
T PF10508_consen 124 IIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEAA-EA---- 197 (503)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHHH-HH----
Confidence 999999999999999999999998765443 33556688899974 55588889999999999987655321 11
Q ss_pred HhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhH----HHHHHHHHHHHhccC------ChHHHHHHHHHHHh
Q 003201 218 EALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNE----IFDIMNLLEDRLQHA------NGAVVLSTIKVFLH 287 (840)
Q Consensus 218 ~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e----~~~il~~l~~~L~~~------n~aVvleaik~il~ 287 (840)
.....++..+++.+.+-+.-.|...+++|....-.+..- ...+++.+...+.+. +.-.+.+.++.+.+
T Consensus 198 --~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 198 --VVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN 275 (503)
T ss_pred --HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence 122346788888899988899999999999886532211 123455666666542 22245566677777
Q ss_pred ccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCcccccccEEEEccCCCHHHHHHHHHHHHhccC
Q 003201 288 LTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVAN 367 (840)
Q Consensus 288 l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n 367 (840)
+....+.-....+..+...|..++.+.|+..+-+|++++..|.... ...++| ....
T Consensus 276 la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~-----------------------~G~~~L-~~~~ 331 (503)
T PF10508_consen 276 LARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTV-----------------------EGKQLL-LQKQ 331 (503)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH-----------------------HHHHHH-Hhhc
Confidence 6553222111223344445566778899999999999999887431 112222 3345
Q ss_pred CCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCC--hHHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhC-CCcc
Q 003201 368 ESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD--VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKY-PQWS 444 (840)
Q Consensus 368 ~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~--~~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~-p~~~ 444 (840)
...++.+++....+......+++..++.+++.+-...++ .+......-.+.+.-++.-... .+.+++++= |+++
T Consensus 332 ~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~---~l~~~~~qPF~elr 408 (503)
T PF10508_consen 332 GPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSN---LLMSLLKQPFPELR 408 (503)
T ss_pred chHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHH---HHHHHhcCCchHHH
Confidence 667888999999999998999999999999988543332 2223322222233222111111 555666543 6776
Q ss_pred hhHHHHHHhhhcccCCchHHHHHHHHHHcCcCCCCCChHHHHHHHHHhhccCCcHH---HHHHHHHHHhHH
Q 003201 445 HDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAE---VRLHLLTAVMKC 512 (840)
Q Consensus 445 ~~~~~~l~~l~~~~i~~~~ak~a~iwilGEy~~~i~~~~~il~~l~~~~~~e~~~~---vk~~lLta~~Kl 512 (840)
-.+..++..+. .--|.+=+.. +-+.+++.++++-.+.+ .+ -|..++.+++|.
T Consensus 409 ~a~~~~l~~l~-----------~~~Wg~~~i~----~~~gfie~lldr~~E~~-K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 409 CAAYRLLQALA-----------AQPWGQREIC----SSPGFIEYLLDRSTETT-KEGKEAKYDIIKALAKS 463 (503)
T ss_pred HHHHHHHHHHh-----------cCHHHHHHHH----hCccHHhhhcCCCCCCC-HHHHHHHHHHHHHHHhc
Confidence 55544454442 1125444433 34567888887765544 33 444455555543
No 22
>PRK09687 putative lyase; Provisional
Probab=98.75 E-value=1.9e-06 Score=93.45 Aligned_cols=218 Identities=15% Similarity=0.078 Sum_probs=113.3
Q ss_pred hhhhhhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhh-cCCCChhhHhHHHHHhhCCChhhh--HHHHHHHHH
Q 003201 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRD-CKDEDPMIRGLALRSLCSLRVANL--VEYLVGPLG 141 (840)
Q Consensus 65 F~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KD-l~~~Np~ir~LALr~l~~I~~~~i--~e~l~~~v~ 141 (840)
|..+.+++.+.|...|+.+=-.|..+-..... .--+.+.|..= ++|+++.||+.|...||.++.+.. ...+...+.
T Consensus 56 ~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~ 134 (280)
T PRK09687 56 FRLAIELCSSKNPIERDIGADILSQLGMAKRC-QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQ 134 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHH
Confidence 56666666666666666666556655432210 00111122111 356666777777777766654332 233444455
Q ss_pred hccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhc
Q 003201 142 LGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALI 221 (840)
Q Consensus 142 ~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li 221 (840)
..+.|+++.||+.|+.++.++- ++..++.|..+ ++|+|+.|...|+.+|..+...
T Consensus 135 ~~~~D~~~~VR~~a~~aLg~~~--------~~~ai~~L~~~-L~d~~~~VR~~A~~aLg~~~~~---------------- 189 (280)
T PRK09687 135 ITAFDKSTNVRFAVAFALSVIN--------DEAAIPLLINL-LKDPNGDVRNWAAFALNSNKYD---------------- 189 (280)
T ss_pred HHhhCCCHHHHHHHHHHHhccC--------CHHHHHHHHHH-hcCCCHHHHHHHHHHHhcCCCC----------------
Confidence 6666666677776666665431 12345556665 4666666666666666655211
Q ss_pred cHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHH
Q 003201 222 SKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE 301 (840)
Q Consensus 222 ~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~ 301 (840)
++.++..|+..+.+.+++.+...+..|.++.. + ..++.|...|++.. +..+++..+-.+.. .
T Consensus 190 ~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--~----~av~~Li~~L~~~~--~~~~a~~ALg~ig~----------~ 251 (280)
T PRK09687 190 NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--K----RVLSVLIKELKKGT--VGDLIIEAAGELGD----------K 251 (280)
T ss_pred CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--h----hHHHHHHHHHcCCc--hHHHHHHHHHhcCC----------H
Confidence 11233445555566666666666666666432 1 23455555555433 44455555544432 1
Q ss_pred HHHHHHHHhhc-CCCchhHHHHHHHH
Q 003201 302 RIKAPLLTLVS-SGSPEQSYAVLSHL 326 (840)
Q Consensus 302 rl~~~L~~lLs-s~~~nirY~aL~~l 326 (840)
+..+.|..++. ..|+.++-.+...+
T Consensus 252 ~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 252 TLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 24455555554 44555555554444
No 23
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=4e-05 Score=87.64 Aligned_cols=291 Identities=16% Similarity=0.160 Sum_probs=204.8
Q ss_pred cCCCchHHHHHHHHHhhcCC-CChhhHhHHHHHhhCCChhhhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHHHhhcC--
Q 003201 92 KVNPDLALLTINFLQRDCKD-EDPMIRGLALRSLCSLRVANLVEYLVGPLGLGL-KDNNSYVRTVAVIGVLKLYHISA-- 167 (840)
Q Consensus 92 ~~~~dl~lL~iNtl~KDl~~-~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L-~d~~pyVRK~Aala~~kl~~~~p-- 167 (840)
..+++..+-++..|+|-+.. .||-+. .++++ -+++.+..+| .+.+|-+|--|+-|+.++-.-..
T Consensus 77 S~~~~~q~~a~~~~rkllS~~~~ppi~-~vi~~-----------G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~ 144 (514)
T KOG0166|consen 77 SDDPQQQLTATQAFRKLLSKERNPPID-EVIQS-----------GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQ 144 (514)
T ss_pred CCCHHHHHHHHHHHHHHHccCCCCCHH-HHHHc-----------CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhh
Confidence 45566677788888888865 355443 22332 2344445555 57789999999999999998544
Q ss_pred -CcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCCh-hHHHHHH
Q 003201 168 -PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSE-WAQCLVL 245 (840)
Q Consensus 168 -~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~-W~Qi~iL 245 (840)
..+.+.+.++.+..| +.+++.-|.--|+-+|..|+.+.+. |++. .+...++..|+..+...++ =..-.+.
T Consensus 145 T~~vv~agavp~fi~L-l~s~~~~v~eQavWALgNIagds~~-----~Rd~--vl~~g~l~pLl~~l~~~~~~~~lRn~t 216 (514)
T KOG0166|consen 145 TKVVVDAGAVPIFIQL-LSSPSADVREQAVWALGNIAGDSPD-----CRDY--VLSCGALDPLLRLLNKSDKLSMLRNAT 216 (514)
T ss_pred ccccccCCchHHHHHH-hcCCcHHHHHHHHHHHhccccCChH-----HHHH--HHhhcchHHHHHHhccccchHHHHHHH
Confidence 455678889999997 7999999999999999999876553 6553 3555577888888777666 1122233
Q ss_pred HHHHhcCC----CCh-hHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHH-HHHHHHHHhhcCCCchhH
Q 003201 246 ELVAKYVP----LDS-NEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQS 319 (840)
Q Consensus 246 ~lL~~y~p----~~~-~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~-rl~~~L~~lLss~~~nir 319 (840)
-.|..++. ..+ +....+++.|..+|+|...-|+-.|+.++.+++....+..+.+++ .+.+-|+.+|...+++++
T Consensus 217 W~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~ 296 (514)
T KOG0166|consen 217 WTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVV 296 (514)
T ss_pred HHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccc
Confidence 34555543 222 567788999999999999999999999999998654443333433 455668889998889999
Q ss_pred HHHHHHHHHHHhhCCC----cccc-cccEEE-Ecc-CCCHHHHHHHHHHHHhccCCCCHH--------HHHHHHHHhhhc
Q 003201 320 YAVLSHLHILVMRAPF----IFAS-DYKHFY-CQY-NEPSYVKKLKLEMLTAVANESNTY--------EIVTELCEYAAN 384 (840)
Q Consensus 320 Y~aL~~l~~l~~~~p~----~~~~-~~~~f~-c~~-~dp~~IK~~kLdiL~~L~n~~Nv~--------~Iv~EL~~y~~~ 384 (840)
--+|+.+.-|+.-.-. ++.. -+..|- +.. +....||..+.-++..++. .|.+ .++..|.+-+..
T Consensus 297 ~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA-G~~~qiqaVida~l~p~Li~~l~~ 375 (514)
T KOG0166|consen 297 TPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA-GNQEQIQAVIDANLIPVLINLLQT 375 (514)
T ss_pred cHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc-CCHHHHHHHHHcccHHHHHHHHhc
Confidence 9999988776542211 1111 111121 223 4446699999999999875 4543 367788888888
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 003201 385 VDIPIARESIRAVGKIALQ 403 (840)
Q Consensus 385 ~d~~~~~~~i~aI~~la~k 403 (840)
.|.+.++++.-+|+.++..
T Consensus 376 ~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 376 AEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred cchHHHHHHHHHHHhhccc
Confidence 9999999999999988765
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.47 E-value=4.8e-05 Score=89.33 Aligned_cols=332 Identities=14% Similarity=0.165 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHHhcCCCccchhh----hhhhhccCCCcchHHHHHHHHHHhccCCCchHHHH-----HHHHHhhcCCCCh
Q 003201 44 KRELFKKVISYMTIGIDVSAVFG----EMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLT-----INFLQRDCKDEDP 114 (840)
Q Consensus 44 kk~~lkKlI~~m~lG~DvS~lF~----~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~-----iNtl~KDl~~~Np 114 (840)
..+..+.+|.......+...+.+ .+...+.+++-..|+++--.+.++++.+...+-++ ...+..=+.++|.
T Consensus 54 ~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~ 133 (503)
T PF10508_consen 54 QVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL 133 (503)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH
Confidence 34455555555554444433333 33468889999999998888888876654422222 3445566689999
Q ss_pred hhHhHHHHHhhCCC-hhhhHHHH-----HHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcc---cCCCchHHHHHHHhc
Q 003201 115 MIRGLALRSLCSLR-VANLVEYL-----VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLN 185 (840)
Q Consensus 115 ~ir~LALr~l~~I~-~~~i~e~l-----~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~---~~~~~~~~L~~lLL~ 185 (840)
.+...|++.|.++. .+...+.+ ...+.+++..+++.||-++.-.+.++...+|+.. .+.++++.+.+. ++
T Consensus 134 ~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~e-L~ 212 (503)
T PF10508_consen 134 SVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKE-LD 212 (503)
T ss_pred HHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHH-hc
Confidence 99999999999984 34445556 7788888888899999999999999999998764 456788888887 68
Q ss_pred CCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhcc--CCh-hHHHHHH---HHHHhcCCCChhHH
Q 003201 186 DPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKE--FSE-WAQCLVL---ELVAKYVPLDSNEI 259 (840)
Q Consensus 186 D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~--~~~-W~Qi~iL---~lL~~y~p~~~~e~ 259 (840)
+.|..|..||+-+|.+++....+ ..++....++.+|++.+.+ .+| +.-+.+. +++......++...
T Consensus 213 ~dDiLvqlnalell~~La~~~~g--------~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v 284 (503)
T PF10508_consen 213 SDDILVQLNALELLSELAETPHG--------LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEV 284 (503)
T ss_pred CccHHHHHHHHHHHHHHHcChhH--------HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHH
Confidence 89999999999999999874322 1233444567788877653 355 4444443 44443333244333
Q ss_pred ----HHHHHHHHHHhccCChHHHHHHHHHHHhccCCCch---h-H--HHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHH
Q 003201 260 ----FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTD---V-H--QQVYERIKAPLLTLVSSGSPEQSYAVLSHLHIL 329 (840)
Q Consensus 260 ----~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~---~-~--~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l 329 (840)
..+++.+...+.+.+......|+-++-.+..+... + . ...++.+.........++..++|-.+|+.+..|
T Consensus 285 ~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~i 364 (503)
T PF10508_consen 285 LELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASI 364 (503)
T ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 34666667777777776555555555544432211 1 0 112223333445566677789999999999999
Q ss_pred HhhCCC-----c---ccccc--------c-EEEEccCCC-HHHHHHHHHHHHhccCCCCHHHHH---HHHHHhhhc
Q 003201 330 VMRAPF-----I---FASDY--------K-HFYCQYNEP-SYVKKLKLEMLTAVANESNTYEIV---TELCEYAAN 384 (840)
Q Consensus 330 ~~~~p~-----~---~~~~~--------~-~f~c~~~dp-~~IK~~kLdiL~~L~n~~Nv~~Iv---~EL~~y~~~ 384 (840)
....+. + ....+ . .|+-....| .-||.-.+.+|..||...-...-+ .++.+|+.+
T Consensus 365 l~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lld 440 (503)
T PF10508_consen 365 LTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLD 440 (503)
T ss_pred HhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcC
Confidence 754332 1 11101 1 111112444 567788888888777765333322 245566644
No 25
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=0.00037 Score=79.07 Aligned_cols=330 Identities=17% Similarity=0.152 Sum_probs=220.4
Q ss_pred HHHHHHHHHhhcC-CCCh-----hhHhHHHHHhhC-CChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcc
Q 003201 98 ALLTINFLQRDCK-DEDP-----MIRGLALRSLCS-LRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (840)
Q Consensus 98 ~lL~iNtl~KDl~-~~Np-----~ir~LALr~l~~-I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~ 170 (840)
..=+|..+-+|.. +++. -.-|+|.-++|- .......+.+.++|..|++|++.-||--|+-+++.+-+.....+
T Consensus 40 i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v 119 (675)
T KOG0212|consen 40 IRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEV 119 (675)
T ss_pred HHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCc
Confidence 3344555555543 2222 233555554442 23334788899999999999999999999999999998877765
Q ss_pred c--CCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHH-hhccCChhHHHHHHHH
Q 003201 171 I--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLN-RIKEFSEWAQCLVLEL 247 (840)
Q Consensus 171 ~--~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~-~l~~~~~W~Qi~iL~l 247 (840)
. -+++.+.+.++ -.|+|..|...| -++..+.+.-... ....++-+.+..|++ ++...+|...+.+++-
T Consensus 120 ~~~Fn~iFdvL~kl-saDsd~~V~~~a-eLLdRLikdIVte-------~~~tFsL~~~ipLL~eriy~~n~~tR~flv~W 190 (675)
T KOG0212|consen 120 LVYFNEIFDVLCKL-SADSDQNVRGGA-ELLDRLIKDIVTE-------SASTFSLPEFIPLLRERIYVINPMTRQFLVSW 190 (675)
T ss_pred ccchHHHHHHHHHH-hcCCccccccHH-HHHHHHHHHhccc-------cccccCHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 2 23344556665 579999988766 3444443321110 001123234445554 6778899999999998
Q ss_pred HHhcCCCChhHHH----HHHHHHHHHhccCChHHHHHHHHHHHhc---cCCCchhHHHHHHHHHHHHHHhhcCCCchhHH
Q 003201 248 VAKYVPLDSNEIF----DIMNLLEDRLQHANGAVVLSTIKVFLHL---TLSMTDVHQQVYERIKAPLLTLVSSGSPEQSY 320 (840)
Q Consensus 248 L~~y~p~~~~e~~----~il~~l~~~L~~~n~aVvleaik~il~l---~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY 320 (840)
+..+-...+-+.. .+++-+-..|..++..|.--|=.++-.+ -.+.|+.- -+.++.+.|+.-+.++++++|-
T Consensus 191 l~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~--d~~~~i~vlv~~l~ss~~~iq~ 268 (675)
T KOG0212|consen 191 LYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM--DYDDMINVLVPHLQSSEPEIQL 268 (675)
T ss_pred HHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc--CcccchhhccccccCCcHHHHH
Confidence 8876433333433 3444455566777777764333332221 11222210 1345677788888899999999
Q ss_pred HHHHHHHHHHhhCCCccccccc-----EEEEccCCCH-HHHHHHHH---HHHhccCCCCH------HHHHHHHHHhhhcC
Q 003201 321 AVLSHLHILVMRAPFIFASDYK-----HFYCQYNEPS-YVKKLKLE---MLTAVANESNT------YEIVTELCEYAANV 385 (840)
Q Consensus 321 ~aL~~l~~l~~~~p~~~~~~~~-----~f~c~~~dp~-~IK~~kLd---iL~~L~n~~Nv------~~Iv~EL~~y~~~~ 385 (840)
.||..|..+++..|..+-.++. .+=|..+++. +||-.+-. .|.+++++.-- ..|++-|..|+.+.
T Consensus 269 ~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~ 348 (675)
T KOG0212|consen 269 KALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDD 348 (675)
T ss_pred HHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcc
Confidence 9999999999999876655543 2347766665 56665543 35666665443 38999999999998
Q ss_pred CHHHHHHHHHHHHHHHhhcCCh-----HHHHHHHHHHhhhcCchhhHHHHHHHHHHHh
Q 003201 386 DIPIARESIRAVGKIALQQYDV-----NAIVDRLLQFLEMEKDYVTAEALVLVKDLLR 438 (840)
Q Consensus 386 d~~~~~~~i~aI~~la~k~~~~-----~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~ 438 (840)
..+-|-.+..-|..+-.|.|.- ..+..+|++-|+...+.|+.-+..++..|..
T Consensus 349 ~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~ 406 (675)
T KOG0212|consen 349 REETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICS 406 (675)
T ss_pred hHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhc
Confidence 8999999999999999998851 4578889988888888888888888888875
No 26
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.00045 Score=84.39 Aligned_cols=423 Identities=15% Similarity=0.176 Sum_probs=261.1
Q ss_pred HHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHHHhh-cCCcccCCCchHHHH--
Q 003201 105 LQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGL-KDNNSYVRTVAVIGVLKLYHI-SAPTCIDADFPPTLK-- 180 (840)
Q Consensus 105 l~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L-~d~~pyVRK~Aala~~kl~~~-~p~~~~~~~~~~~L~-- 180 (840)
|..-+.+|+-.+|--|=+++.++-.++= +.+.+...+ ...+|-||.-|+.=+-|+..+ ++..- .+-...|+
T Consensus 9 Ll~~l~spDn~vr~~Ae~~l~~~~~~~~---~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~--~e~~~siks~ 83 (1075)
T KOG2171|consen 9 LLQQLLSPDNEVRRQAEEALETLAKTEP---LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLS--AEVQQSIKSS 83 (1075)
T ss_pred HHHHhcCCCchHHHHHHHHHHHhhcccc---hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCC--HHHHHHHHHH
Confidence 4455667777778888888876533221 444455544 346899999998888887754 33221 22222222
Q ss_pred --HHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcC---CC-
Q 003201 181 --HLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV---PL- 254 (840)
Q Consensus 181 --~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~---p~- 254 (840)
..+..++-+.|.-.-.-++.||.+.... +.| +..+.-|....+..++=.+-..+.+|..+. +.
T Consensus 84 lL~~~~~E~~~~vr~k~~dviAeia~~~l~-------e~W----Pell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~ 152 (1075)
T KOG2171|consen 84 LLEIIQSETEPSVRHKLADVIAEIARNDLP-------EKW----PELLQFLFQSTKSPNPSLRESALLILSSLPETFGNT 152 (1075)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhccc-------cch----HHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccc
Confidence 3335788888887777888888875432 123 234566777788888888777777776542 22
Q ss_pred ChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCC---chhH---HHHHHHHHHHHHHhhcCCCchhHHHHHHHHHH
Q 003201 255 DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM---TDVH---QQVYERIKAPLLTLVSSGSPEQSYAVLSHLHI 328 (840)
Q Consensus 255 ~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~---~~~~---~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~ 328 (840)
......++...+...+...++.|...+++.+..+.... ++.. ..++-++...+..++..++....--+|..+..
T Consensus 153 ~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~E 232 (1075)
T KOG2171|consen 153 LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIE 232 (1075)
T ss_pred cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence 22234467777778887776669999999877654322 2211 23334455555667776666667889999999
Q ss_pred HHhhCCCcccccccEE--E-----EccCCCHHHHHHHHHHHHhccCC------C---CHHHHHHHHHHhhhcC--C----
Q 003201 329 LVMRAPFIFASDYKHF--Y-----CQYNEPSYVKKLKLEMLTAVANE------S---NTYEIVTELCEYAANV--D---- 386 (840)
Q Consensus 329 l~~~~p~~~~~~~~~f--~-----c~~~dp~~IK~~kLdiL~~L~n~------~---Nv~~Iv~EL~~y~~~~--d---- 386 (840)
++...|.++.+|+..+ | +..+=+..+|..+|++|+.+..- . =...++.-++.-+++. |
T Consensus 233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~ 312 (1075)
T KOG2171|consen 233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS 312 (1075)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhc
Confidence 9999999999988643 2 23445578999999999987532 1 1233444445444432 1
Q ss_pred ----------HHHHHHHHHHHHHHHhhcCCh---HHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcch----hHHH
Q 003201 387 ----------IPIARESIRAVGKIALQQYDV---NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSH----DCIA 449 (840)
Q Consensus 387 ----------~~~~~~~i~aI~~la~k~~~~---~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~----~~~~ 449 (840)
.+-.+-+.++|-++|.+.+.. .-.+..+-.++....-+-...++..+.-+...+++.-. .++.
T Consensus 313 ~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~ 392 (1075)
T KOG2171|consen 313 NEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILP 392 (1075)
T ss_pred cccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 113566889999999988742 23445555556555444455555555555544433211 1222
Q ss_pred HHHhhhcccCCchHHHHHHHHHHcCcCCCCCC------hHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCChh-HHH
Q 003201 450 VVGSISSQNVQEPKAKAALIWMLGEYSQDMQD------APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPE-TQK 522 (840)
Q Consensus 450 ~l~~l~~~~i~~~~ak~a~iwilGEy~~~i~~------~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e-~~~ 522 (840)
++.+.+.| .+|.+|-+++..+|+.+..+.. ...++..++........+.|+...-.|+.-++-.++.+ ..+
T Consensus 393 ~Vl~~l~D--phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~p 470 (1075)
T KOG2171|consen 393 IVLNGLND--PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEP 470 (1075)
T ss_pred HHHhhcCC--CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 22222222 4688999999999999876632 12233334444433333889999999999888777643 333
Q ss_pred ----HHHHHHHhhccCCChHHHhHHHH
Q 003201 523 ----VLGAALAAGLADFHQDVHDRALF 545 (840)
Q Consensus 523 ----~l~~vL~~~~~d~d~dVrdRA~~ 545 (840)
++.+.|.....+..+.||.-+.-
T Consensus 471 YLd~lm~~~l~~L~~~~~~~v~e~vvt 497 (1075)
T KOG2171|consen 471 YLDGLMEKKLLLLLQSSKPYVQEQAVT 497 (1075)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 33345555567788999988764
No 27
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00053 Score=80.40 Aligned_cols=404 Identities=13% Similarity=0.169 Sum_probs=230.6
Q ss_pred CCCChhhHhHHHHHhhC-CChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCC
Q 003201 110 KDEDPMIRGLALRSLCS-LRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPD 188 (840)
Q Consensus 110 ~~~Np~ir~LALr~l~~-I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d 188 (840)
.+++.-...=|++.+=. |....=+..++++|.|....+++-|||-.-+-+++.-...|+... =-+..+++. |.|+|
T Consensus 45 dSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL--LSIntfQk~-L~DpN 121 (968)
T KOG1060|consen 45 DSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL--LSINTFQKA-LKDPN 121 (968)
T ss_pred hccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee--eeHHHHHhh-hcCCc
Confidence 34455555555544333 322233778899999999999999999999999999888998752 236788888 69999
Q ss_pred hhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 003201 189 PQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLED 268 (840)
Q Consensus 189 ~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~ 268 (840)
+.+.+.|+.+|..|.- ..|.+-++..+=++..+++|+..-..-..+.++..-++++...+++.+..
T Consensus 122 ~LiRasALRvlSsIRv--------------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~ 187 (968)
T KOG1060|consen 122 QLIRASALRVLSSIRV--------------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKK 187 (968)
T ss_pred HHHHHHHHHHHHhcch--------------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHH
Confidence 9999999999999842 12222122223335678899987777777777666777777799999999
Q ss_pred HhccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhh---CCCcccccc--cE
Q 003201 269 RLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMR---APFIFASDY--KH 343 (840)
Q Consensus 269 ~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~---~p~~~~~~~--~~ 343 (840)
+|....+-|+=+|+-+|-.+.+..-++...-+.|+. ++|-.-+.=-|-+.+..+.+-+.. .|....... .-
T Consensus 188 LLaD~splVvgsAv~AF~evCPerldLIHknyrklC----~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~ 263 (968)
T KOG1060|consen 188 LLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLC----RLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNG 263 (968)
T ss_pred HhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHH----hhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCc
Confidence 999999999988888887776654343333344543 344322222356666666666543 232211111 01
Q ss_pred EEEccCCC-HHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcC
Q 003201 344 FYCQYNEP-SYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEK 422 (840)
Q Consensus 344 f~c~~~dp-~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~~~~v~~Ll~LL~~~~ 422 (840)
+-|..-+. .+||.= .++..-++.+++-..-.+.+.+..++-.+.++.-.+|=+. +...++.-|+.||....
T Consensus 264 ~~~~~~~~~~~~~~P-------~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~-~~~~i~kaLvrLLrs~~ 335 (968)
T KOG1060|consen 264 RSCNLKDKYNEIRTP-------YVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN-QVTKIAKALVRLLRSNR 335 (968)
T ss_pred ccccccccccccCCC-------cccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH-HHHHHHHHHHHHHhcCC
Confidence 22211000 011111 3334444444444444444555555544444444444332 23446666777666533
Q ss_pred --chhhHHHHHHHHHHHhhCCCcchh------------------HHHHHHhhh------------cccCCc--hHHHHHH
Q 003201 423 --DYVTAEALVLVKDLLRKYPQWSHD------------------CIAVVGSIS------------SQNVQE--PKAKAAL 468 (840)
Q Consensus 423 --~~v~~e~v~~i~~il~~~p~~~~~------------------~~~~l~~l~------------~~~i~~--~~ak~a~ 468 (840)
.|++=..+ ..+..+.|.+++. -+.+|.++. ..++.. -+.-++.
T Consensus 336 ~vqyvvL~nI---a~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~a 412 (968)
T KOG1060|consen 336 EVQYVVLQNI---ATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAA 412 (968)
T ss_pred cchhhhHHHH---HHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHH
Confidence 23332222 2222222322210 011222221 112222 2345556
Q ss_pred HHHHcCcCCCCCC-hHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCChhHHHHHHHHHHhhccCCChHHHhHHHHHH
Q 003201 469 IWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALFYH 547 (840)
Q Consensus 469 iwilGEy~~~i~~-~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~~~~l~~vL~~~~~d~d~dVrdRA~~Y~ 547 (840)
+--||-++..+-. .+..|.-++......+ ..|-.+....+=+|.-+.|.+-..++.++.+.. +.-.-=+-||...|
T Consensus 413 V~AiGrCA~~~~sv~~tCL~gLv~Llsshd-e~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~ll--dti~vp~ARA~IiW 489 (968)
T KOG1060|consen 413 VKAIGRCASRIGSVTDTCLNGLVQLLSSHD-ELVVAEAVVVIKRLLQKDPAEHLEILFQLARLL--DTILVPAARAGIIW 489 (968)
T ss_pred HHHHHHHHHhhCchhhHHHHHHHHHHhccc-chhHHHHHHHHHHHHhhChHHHHHHHHHHHHHh--hhhhhhhhhceeee
Confidence 7778888776654 5667777777776666 667777777776776667765444555554443 22222345666655
Q ss_pred H
Q 003201 548 R 548 (840)
Q Consensus 548 r 548 (840)
=
T Consensus 490 L 490 (968)
T KOG1060|consen 490 L 490 (968)
T ss_pred e
Confidence 3
No 28
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.29 E-value=0.00066 Score=78.92 Aligned_cols=419 Identities=17% Similarity=0.144 Sum_probs=224.6
Q ss_pred HHHHHHHHHHHHHH--hcCCCccchhhhhh---------hhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcC
Q 003201 42 DSKRELFKKVISYM--TIGIDVSAVFGEMV---------MCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCK 110 (840)
Q Consensus 42 ~~kk~~lkKlI~~m--~lG~DvS~lF~~Vi---------~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~ 110 (840)
+..|+.+.||+-.. +-|.+-.++.++++ .-|+...-..|+++|+......+.-.+- .|+-+..|+.
T Consensus 650 eemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~---~v~R~v~~lk 726 (1172)
T KOG0213|consen 650 EEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDP---IVSRVVLDLK 726 (1172)
T ss_pred HHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchH---HHHHHhhhhc
Confidence 45555666676543 46877666655554 3455666777999999999887765543 6788888999
Q ss_pred CCChhhHhHHH----HHhhCCCh--------------------------------------------hhhHHHHHHHHHh
Q 003201 111 DEDPMIRGLAL----RSLCSLRV--------------------------------------------ANLVEYLVGPLGL 142 (840)
Q Consensus 111 ~~Np~ir~LAL----r~l~~I~~--------------------------------------------~~i~e~l~~~v~~ 142 (840)
|.+|..|-++. |.+++++. ......++..+..
T Consensus 727 de~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~ 806 (1172)
T KOG0213|consen 727 DEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILW 806 (1172)
T ss_pred cccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHH
Confidence 99986665544 44454432 2233444555555
Q ss_pred ccCCCChHHHHHHHHHHHHHHhhcCCcc---cCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHh
Q 003201 143 GLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREA 219 (840)
Q Consensus 143 ~L~d~~pyVRK~Aala~~kl~~~~p~~~---~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~ 219 (840)
.|++++|-||..|+--+.++-..-...- .-...-..|++- |.+.+|-|+++.+.+++.|...-
T Consensus 807 rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEy-lgeeypEvLgsILgAikaI~nvi------------- 872 (1172)
T KOG0213|consen 807 RLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEY-LGEEYPEVLGSILGAIKAIVNVI------------- 872 (1172)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHh-cCcccHHHHHHHHHHHHHHHHhc-------------
Confidence 5666666666666655544433221110 001112233343 35556666666666655553210
Q ss_pred hccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCch-hHHH
Q 003201 220 LISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTD-VHQQ 298 (840)
Q Consensus 220 li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~-~~~~ 298 (840)
.+-....| +.+++..+.+.|++..--|+-.||.+.-.+....++ +...
T Consensus 873 --------------------------gm~km~pP-----i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aR 921 (1172)
T KOG0213|consen 873 --------------------------GMTKMTPP-----IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAR 921 (1172)
T ss_pred --------------------------cccccCCC-----hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHH
Confidence 00001112 567889999999998888888888876655433222 2222
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCcccccccEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHH
Q 003201 299 VYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTEL 378 (840)
Q Consensus 299 ~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL 378 (840)
-.-|+.--|+-+|.+-.-++|-.+...+..|+.. --=.+|+.-|
T Consensus 922 EWMRIcfeLlelLkahkK~iRRaa~nTfG~Iaka------------------------------------IGPqdVLatL 965 (1172)
T KOG0213|consen 922 EWMRICFELLELLKAHKKEIRRAAVNTFGYIAKA------------------------------------IGPQDVLATL 965 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh------------------------------------cCHHHHHHHH
Confidence 2334444455556555566776666666655532 1123444444
Q ss_pred HHhhhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchhHHHHHHhhhccc
Q 003201 379 CEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQN 458 (840)
Q Consensus 379 ~~y~~~~d~~~~~~~i~aI~~la~k~~~~~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~~~~l~~l~~~~ 458 (840)
+.-+..-+-.-|.-...+|+..|+..... ..+..|+.=-....-.|-+-++..+.-++..-.+.....+..+.-+++|.
T Consensus 966 lnnLkvqeRq~RvcTtvaIaIVaE~c~pF-tVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDA 1044 (1172)
T KOG0213|consen 966 LNNLKVQERQNRVCTTVAIAIVAETCGPF-TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDA 1044 (1172)
T ss_pred HhcchHHHHHhchhhhhhhhhhhhhcCch-hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHh
Confidence 55444444445555566677776653221 12333332222222233344444455555433333322222233333443
Q ss_pred CCchHH--HH----HH-HHHHcCcCCCCCC-hHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCChhHHHHHHHHHHh
Q 003201 459 VQEPKA--KA----AL-IWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAA 530 (840)
Q Consensus 459 i~~~~a--k~----a~-iwilGEy~~~i~~-~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~~~~l~~vL~~ 530 (840)
+.+-.. ++ ++ --.||-||--..+ ..-+|+.+.-+..+.+ |-|...+..++=-+-..-. .+.+++++++.
T Consensus 1045 lmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~s-Phviqa~~e~~eg~r~~Lg--~~~~~~Y~~QG 1121 (1172)
T KOG0213|consen 1045 LMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETS-PHVIQAFDEAMEGLRVALG--PQAMLKYCLQG 1121 (1172)
T ss_pred hccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCC-hHHHHHHHHHHHHHHHHhc--hHHHHHHHHHh
Confidence 322211 11 11 2347777765554 3456666666777666 8888888887765543332 24455555543
Q ss_pred hccCCChHHHhHHHHHHHHccC
Q 003201 531 GLADFHQDVHDRALFYHRLLQY 552 (840)
Q Consensus 531 ~~~d~d~dVrdRA~~Y~rLL~~ 552 (840)
.....--||+| ||+.+..
T Consensus 1122 -LFHParkVR~~---yw~vyn~ 1139 (1172)
T KOG0213|consen 1122 -LFHPARKVRKR---YWTVYNS 1139 (1172)
T ss_pred -ccCcHHHHHHH---HHHHHHh
Confidence 33455678988 7776653
No 29
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.0053 Score=75.37 Aligned_cols=512 Identities=14% Similarity=0.132 Sum_probs=279.7
Q ss_pred hhhhhhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHH---HHhhCCChhhhHHH----HH
Q 003201 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLAL---RSLCSLRVANLVEY----LV 137 (840)
Q Consensus 65 F~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LAL---r~l~~I~~~~i~e~----l~ 137 (840)
|-+.+.-+.++|=..+|=.==.+.+.+...+ ++....+-+. ++.||.+|.+|. |-++.=..+.+... +-
T Consensus 6 l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~-~l~~L~~i~~---~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~sik 81 (1075)
T KOG2171|consen 6 LEQLLQQLLSPDNEVRRQAEEALETLAKTEP-LLPALAHILA---TSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIK 81 (1075)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhcccc-hHHHHHHHHh---cCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4444444444444445555555555554444 2222221111 246788888873 44433333333333 33
Q ss_pred HHHHhcc-CCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHH---HHHhcCCChhHHHHHHHHHHHHHhhccCcchHH
Q 003201 138 GPLGLGL-KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK---HLMLNDPDPQVVANCLSALQEIWSLEASTSEEA 213 (840)
Q Consensus 138 ~~v~~~L-~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~---~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~ 213 (840)
..+..++ +-+.+-||||-+-.+.-+.+..=+ .+|.+.|. .. .+++|+...-.|+..|..+...-+.
T Consensus 82 s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~----e~WPell~~L~q~-~~S~~~~~rE~al~il~s~~~~~~~----- 151 (1075)
T KOG2171|consen 82 SSLLEIIQSETEPSVRHKLADVIAEIARNDLP----EKWPELLQFLFQS-TKSPNPSLRESALLILSSLPETFGN----- 151 (1075)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhccc----cchHHHHHHHHHH-hcCCCcchhHHHHHHHHhhhhhhcc-----
Confidence 3333333 446899999999999999875321 25766554 44 5789999999999988877542221
Q ss_pred HHHHHhhccHHH---HHHH-HHhhccCChhHHHHHHHHHHhcCCC---ChhHHHH-------HHHHHHHHhccCChHHHH
Q 003201 214 SREREALISKPV---IYYL-LNRIKEFSEWAQCLVLELVAKYVPL---DSNEIFD-------IMNLLEDRLQHANGAVVL 279 (840)
Q Consensus 214 ~~~~~~li~~~~---~~~L-l~~l~~~~~W~Qi~iL~lL~~y~p~---~~~e~~~-------il~~l~~~L~~~n~aVvl 279 (840)
-..++ +..| ...+.+.+--..+.-++.+..|.+. +..+... +++.+.+.++.-+....-
T Consensus 152 -------~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~ 224 (1075)
T KOG2171|consen 152 -------TLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAK 224 (1075)
T ss_pred -------ccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHH
Confidence 01111 2223 3346665433777778877776543 3444332 344555566666665556
Q ss_pred HHHHHHHhccCCCchhHHHHHHHHHHHHHHhhc--CCCchhHHHHHHHHHHHHhhCCCccccc--c-cEE-------EE-
Q 003201 280 STIKVFLHLTLSMTDVHQQVYERIKAPLLTLVS--SGSPEQSYAVLSHLHILVMRAPFIFASD--Y-KHF-------YC- 346 (840)
Q Consensus 280 eaik~il~l~~~~~~~~~~~l~rl~~~L~~lLs--s~~~nirY~aL~~l~~l~~~~p~~~~~~--~-~~f-------~c- 346 (840)
++..++..+....+.+-...++.+...-+.... +-++.+|-.||+.|..++...|...+.+ + ..+ .|
T Consensus 225 ~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte 304 (1075)
T KOG2171|consen 225 SALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTE 304 (1075)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCC
Confidence 666666666544444322223333332222333 2467889999999988876654321110 0 000 00
Q ss_pred -------------c---cCCCHHHHHHHHHHHHh-ccCCCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCh--
Q 003201 347 -------------Q---YNEPSYVKKLKLEMLTA-VANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-- 407 (840)
Q Consensus 347 -------------~---~~dp~~IK~~kLdiL~~-L~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~-- 407 (840)
. +++|..+....||.|.. |--+.=+..+++-+..++++.+...|..+..+|+.+++--++.
T Consensus 305 ~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~ 384 (1075)
T KOG2171|consen 305 EEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMI 384 (1075)
T ss_pred cccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHH
Confidence 0 23466777777777655 3334445566667778889999999999999999999865432
Q ss_pred ---HHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhC-CCcchhHHHHH-Hhhh--cccCCchHHHHH-HHHHH--cCcCC
Q 003201 408 ---NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKY-PQWSHDCIAVV-GSIS--SQNVQEPKAKAA-LIWML--GEYSQ 477 (840)
Q Consensus 408 ---~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~-p~~~~~~~~~l-~~l~--~~~i~~~~ak~a-~iwil--GEy~~ 477 (840)
..+++..+..|.....-|...+...+-++-... |+.+++.-..+ ..++ .++-..+++.+. ++.++ .|.+.
T Consensus 385 ~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~ 464 (1075)
T KOG2171|consen 385 GNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD 464 (1075)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc
Confidence 346666777777766678888888877775443 44443332221 1222 245556666433 23333 23332
Q ss_pred CCCC---hHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCChhHH-------HHHHHHHHhhccCCChHHHhHHHHHH
Q 003201 478 DMQD---APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQ-------KVLGAALAAGLADFHQDVHDRALFYH 547 (840)
Q Consensus 478 ~i~~---~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~~-------~~l~~vL~~~~~d~d~dVrdRA~~Y~ 547 (840)
.-.- -+.+++.........+++.||.+.+||++-.......... +.+.++|+.+..+..-++|=...+..
T Consensus 465 ~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEci 544 (1075)
T KOG2171|consen 465 KSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECL 544 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHH
Confidence 1111 2234443333333334499999999999987764332222 22333333333334567777766777
Q ss_pred HHccCC------HHHHHhhcCCCCCC-ccccccCCCHHHHHHHHHhhCcchhhccCCCc
Q 003201 548 RLLQYN------VSVAERVVNPPKQA-VSVFADTQSSEIKDRIFDEFNSLSVVYQKPSY 599 (840)
Q Consensus 548 rLL~~~------~~~a~~vv~~~~p~-~~~~~~~~~~~~~~~l~~~~~tls~vy~k~~~ 599 (840)
.++..- .+.++.++.-..-. .+ ..+ .+.....-++.-.+-+..||++-=.
T Consensus 545 sli~~AVGke~F~~~a~eliqll~~~~~~-~~~-~dd~~~sy~~~~warmc~ilg~~F~ 601 (1075)
T KOG2171|consen 545 SLIARAVGKEKFLPLAEELIQLLLELQGS-DQD-DDDPLRSYMIAFWARMCRILGDDFA 601 (1075)
T ss_pred HHHHHHhhhhhhhHhHHHHHHHHHhhccc-chh-hccccHHHHHHHHHHHHHHhchhhH
Confidence 666542 12344443211100 11 111 2344566677778888888887533
No 30
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.00041 Score=79.93 Aligned_cols=352 Identities=18% Similarity=0.211 Sum_probs=213.3
Q ss_pred hhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccC
Q 003201 129 VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (840)
Q Consensus 129 ~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~ 208 (840)
.++...|+-..+.+++.|.+|.||-+.-+-+-.++.... ...-++..+.|..+ |+.+|....-.|+.+|..|++..+.
T Consensus 84 ~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~-~~~wpelLp~L~~~-L~s~d~n~~EgA~~AL~KIcEDsa~ 161 (885)
T KOG2023|consen 84 PSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGG-LQHWPELLPQLCEL-LDSPDYNTCEGAFGALQKICEDSAQ 161 (885)
T ss_pred ChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccc-cccchhHHHHHHHH-hcCCcccccchhHHHHHHHHhhhHH
Confidence 347788888889999999999999887666655554322 11124456777786 6888888888899999999875432
Q ss_pred cchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhc
Q 003201 209 TSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHL 288 (840)
Q Consensus 209 ~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l 288 (840)
. +. ++|. .+-..-++..+....+|.++.+.-.|++|+=++
T Consensus 162 ~--------------------ld-----s~~~---------------~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 162 F--------------------LD-----SDVL---------------TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQF 201 (885)
T ss_pred H--------------------Hh-----hhcc---------------cCchHHhHHHHHHHHhCCChhHHHHHHhhhhhe
Confidence 1 10 1111 011233556666677788776665555554333
Q ss_pred cCCCch-hHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCcccccccEE--E---EccCCCHHHHHHHHHHH
Q 003201 289 TLSMTD-VHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHF--Y---CQYNEPSYVKKLKLEML 362 (840)
Q Consensus 289 ~~~~~~-~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f--~---c~~~dp~~IK~~kLdiL 362 (840)
-...+. +. .-+++....|..+-++.+||+|--+-+.+..++..+|+-+.+|+..+ | .-.+.+..|..++-|-.
T Consensus 202 i~~~~qal~-~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFw 280 (885)
T KOG2023|consen 202 IIIQTQALY-VHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFW 280 (885)
T ss_pred eecCcHHHH-HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHH
Confidence 222221 11 11233444455566889999999999999999999999888888643 2 22466678999999999
Q ss_pred HhccCCCCHHHHHHHHHH-----------hh-------hcC---------CH----------------------------
Q 003201 363 TAVANESNTYEIVTELCE-----------YA-------ANV---------DI---------------------------- 387 (840)
Q Consensus 363 ~~L~n~~Nv~~Iv~EL~~-----------y~-------~~~---------d~---------------------------- 387 (840)
.++|...=.+.++..-+. |- .+. +.
T Consensus 281 la~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~ 360 (885)
T KOG2023|consen 281 LALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDED 360 (885)
T ss_pred HHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccc
Confidence 999988755554433221 11 100 01
Q ss_pred ---------HHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhc---CchhhHHH-HHHHHHHHhh-----CCCcchhHHH
Q 003201 388 ---------PIARESIRAVGKIALQQYDVNAIVDRLLQFLEME---KDYVTAEA-LVLVKDLLRK-----YPQWSHDCIA 449 (840)
Q Consensus 388 ---------~~~~~~i~aI~~la~k~~~~~~~v~~Ll~LL~~~---~~~v~~e~-v~~i~~il~~-----~p~~~~~~~~ 449 (840)
.+|+-+..++..+|.-|++ .++++++-+|+.. .+-++.|+ +-++--|... +|.+-+ .+.
T Consensus 361 DDdD~~~dWNLRkCSAAaLDVLanvf~~--elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lpe-Lip 437 (885)
T KOG2023|consen 361 DDDDAFSDWNLRKCSAAALDVLANVFGD--ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPE-LIP 437 (885)
T ss_pred ccccccccccHhhccHHHHHHHHHhhHH--HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHH-HHH
Confidence 1344456666666655543 4666666666642 22333333 2233333322 222221 122
Q ss_pred HHHhhhcccCCchHHHHHHHHHHcCcCCCCCC-h-----HHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCChhHHHH
Q 003201 450 VVGSISSQNVQEPKAKAALIWMLGEYSQDMQD-A-----PYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKV 523 (840)
Q Consensus 450 ~l~~l~~~~i~~~~ak~a~iwilGEy~~~i~~-~-----~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~~~~ 523 (840)
.+-.++.+ .-|-+|.-.+|-+|.|+..+-. . ..+++.++.+..+.. ..||-+..+|++-+=-...++.-+.
T Consensus 438 ~l~~~L~D--KkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~N-K~VQEAAcsAfAtleE~A~~eLVp~ 514 (885)
T KOG2023|consen 438 FLLSLLDD--KKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSN-KKVQEAACSAFATLEEEAGEELVPY 514 (885)
T ss_pred HHHHHhcc--CccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHhccchhHHH
Confidence 22222212 3456677779999999987642 2 235667777777777 8999999998887654444455555
Q ss_pred HHHHHH
Q 003201 524 LGAALA 529 (840)
Q Consensus 524 l~~vL~ 529 (840)
+.++|+
T Consensus 515 l~~IL~ 520 (885)
T KOG2023|consen 515 LEYILD 520 (885)
T ss_pred HHHHHH
Confidence 555555
No 31
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0053 Score=71.75 Aligned_cols=340 Identities=15% Similarity=0.114 Sum_probs=204.8
Q ss_pred cCCCccchhhhhhh-hccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCC--ChhhhH
Q 003201 57 IGIDVSAVFGEMVM-CSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL--RVANLV 133 (840)
Q Consensus 57 lG~DvS~lF~~Vi~-l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I--~~~~i~ 133 (840)
-+.|+..+-+.-++ -+.|+|.-.=-++-=.++.+. .||+|.=..|-+..=|++.-|++|--|+-.|-.+ .-|+-+
T Consensus 102 ~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fv--TpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl 179 (877)
T KOG1059|consen 102 DDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIV--TPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL 179 (877)
T ss_pred CCccHHHHHHHHHHHHhccCccchhhheeccccccc--CchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH
Confidence 34455444444432 222444333333333333332 5788887777777778999999999999888775 558999
Q ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHH
Q 003201 134 EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEA 213 (840)
Q Consensus 134 e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~ 213 (840)
...++-++.-|.|++|-|-.+|+-.+.-+-+++|.-+ -.+.+.+..+|...+|-=|+.-.+-++..+..-+|...
T Consensus 180 r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny--L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg--- 254 (877)
T KOG1059|consen 180 RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY--LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG--- 254 (877)
T ss_pred hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc--ccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhh---
Confidence 9999999999999999999999999999999999988 45788899987666666677777777777776666422
Q ss_pred HHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHHhccCChHHHHHHHHHH
Q 003201 214 SREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY--------VPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVF 285 (840)
Q Consensus 214 ~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y--------~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~i 285 (840)
+..+..|++.+.... +--.+-+++... .|.+...+.--++.+..++..+..-.-|=...++
T Consensus 255 ---------KKLieplt~li~sT~--AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam 323 (877)
T KOG1059|consen 255 ---------KKLIEPITELMESTV--AMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAM 323 (877)
T ss_pred ---------hhhhhHHHHHHHhhH--HHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHH
Confidence 222233333221100 001111111111 1111111222233344444444444444444444
Q ss_pred HhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCC--CcccccccEEEEccCCCHHHHHHHHHHHH
Q 003201 286 LHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP--FIFASDYKHFYCQYNEPSYVKKLKLEMLT 363 (840)
Q Consensus 286 l~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p--~~~~~~~~~f~c~~~dp~~IK~~kLdiL~ 363 (840)
..+.+.++.. +.+-+..+++.|++.|++||.-||+.+.-|+.+.- ++++.-+.++ ...++...|-.-+--+.
T Consensus 324 ~KI~ktHp~~----Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~--~~ae~t~yrdell~~II 397 (877)
T KOG1059|consen 324 SKILKTHPKA----VQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHV--EKAEGTNYRDELLTRII 397 (877)
T ss_pred HHHhhhCHHH----HHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HhccchhHHHHHHHHHH
Confidence 4444443321 22334567788999999999999999998886532 1222222222 14455677888888888
Q ss_pred hccCCCCHHHHHHH------HHHhhhcCCHHHHHHHHHHHHHHHhhcCChH-HHHHHHHHHhhh
Q 003201 364 AVANESNTYEIVTE------LCEYAANVDIPIARESIRAVGKIALQQYDVN-AIVDRLLQFLEM 420 (840)
Q Consensus 364 ~L~n~~Nv~~Iv~E------L~~y~~~~d~~~~~~~i~aI~~la~k~~~~~-~~v~~Ll~LL~~ 420 (840)
.+|+.+|..-|.+- |.+.++-...+--+.+-.-|-.++.|.++.. --|+.+..|+..
T Consensus 398 ~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~ 461 (877)
T KOG1059|consen 398 SICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDD 461 (877)
T ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHhc
Confidence 89999998766541 1111111122233455556667777877653 356777777663
No 32
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=98.06 E-value=0.0073 Score=68.63 Aligned_cols=127 Identities=20% Similarity=0.253 Sum_probs=73.7
Q ss_pred HHHHHHhhCCCcc----hhHHHHHHhhhcccCC-chHHHHHHHHHHcCcCCCCCCh---HHHHHHHHHhh----------
Q 003201 432 LVKDLLRKYPQWS----HDCIAVVGSISSQNVQ-EPKAKAALIWMLGEYSQDMQDA---PYILESLTENW---------- 493 (840)
Q Consensus 432 ~i~~il~~~p~~~----~~~~~~l~~l~~~~i~-~~~ak~a~iwilGEy~~~i~~~---~~il~~l~~~~---------- 493 (840)
.+-.+++++|.+- +.+...++.. .++. -.+.-..++|+||||+.---+. .++++.+.+..
T Consensus 291 ~ll~lfk~~PsLvv~l~~~ilef~g~~--~~~~~k~~l~~hlvWaIGEy~s~~~d~rct~~~i~~~fE~LE~llyE~~~~ 368 (459)
T PF14764_consen 291 QLLALFKRHPSLVVELSKEILEFLGSA--SNIHSKEELFTHLVWAIGEYLSVSYDRRCTVEQINEFFEALEALLYEVTQS 368 (459)
T ss_pred HHHHHHHhCcHHHHHhHHHHHHHhccc--ccccchhHHHHHHHHHHhcccccccCCccCHHHHHHHHHHHHHHHHHHhhc
Confidence 3455677777642 2222222221 1232 2344566899999998654332 44433332211
Q ss_pred c--------cCCcHHHHHHHHHHHhHHhhcCChhHHH---HHHHHHHhh---------ccCCChHHHhHHHHHHHHccCC
Q 003201 494 E--------EEPSAEVRLHLLTAVMKCFFKRPPETQK---VLGAALAAG---------LADFHQDVHDRALFYHRLLQYN 553 (840)
Q Consensus 494 ~--------~e~~~~vk~~lLta~~Kl~~~~p~e~~~---~l~~vL~~~---------~~d~d~dVrdRA~~Y~rLL~~~ 553 (840)
. ..+ +.+-..++||++||..+.++-.-. .+.++-... .+..+..|..||.+|+.||+.
T Consensus 369 ~~~~~~~~~~~~-~rl~~~lmt~laKLAsr~~dl~pRv~l~LsK~~~~~~s~~~~~~~~~~~~~~v~~RA~el~~LLk~- 446 (459)
T PF14764_consen 369 RRDPSASRPSSQ-PRLMTVLMTALAKLASRSQDLIPRVSLCLSKMRTLVQSPAVSSVYSEEDDEAVLTRATELLNLLKM- 446 (459)
T ss_pred cccccccCCCCc-hhHHHHHHHHHHHHHHhCHhhhHHHHHHHHHHHHhccCCccccccCcccHHHHHHHHHHHHHHhcC-
Confidence 1 122 667788999999999988742221 122222210 123589999999999999987
Q ss_pred HHHHHhhcC
Q 003201 554 VSVAERVVN 562 (840)
Q Consensus 554 ~~~a~~vv~ 562 (840)
|..|..|+.
T Consensus 447 PsvA~~vL~ 455 (459)
T PF14764_consen 447 PSVAQFVLT 455 (459)
T ss_pred chHHHHhcC
Confidence 577776665
No 33
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.0061 Score=69.57 Aligned_cols=374 Identities=17% Similarity=0.184 Sum_probs=219.2
Q ss_pred hcCCCc----cchhhhhhhhccCCCcchHHHHHHHHHHhccCC-CchHH---HHHHHHHhhcCCCChhhHhHH---HHHh
Q 003201 56 TIGIDV----SAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVN-PDLAL---LTINFLQRDCKDEDPMIRGLA---LRSL 124 (840)
Q Consensus 56 ~lG~Dv----S~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~-~dl~l---L~iNtl~KDl~~~Np~ir~LA---Lr~l 124 (840)
.+|.|- -...+.|+.|++-+|...+--+.-.+-+.++-. .+... .+--.+.|=..|+++.+|+.| -|-+
T Consensus 73 aLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLi 152 (675)
T KOG0212|consen 73 ALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLI 152 (675)
T ss_pred HhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHH
Confidence 366654 234566778888888766544443333333221 12110 223455666788899999877 4555
Q ss_pred hCCChhhh----HHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcc---cCCCchHHHHHHHhcCCChhHHHHHHH
Q 003201 125 CSLRVANL----VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVVANCLS 197 (840)
Q Consensus 125 ~~I~~~~i----~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~---~~~~~~~~L~~lLL~D~d~~Vv~~al~ 197 (840)
-.|..++- ++.++|-++.-+.+.+|+.|.- ++..+++...-|+.- .-+.+.+-|-.+ |.|+++.|..-+=.
T Consensus 153 kdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~f-lv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~-LsD~s~eVr~~~~t 230 (675)
T KOG0212|consen 153 KDIVTESASTFSLPEFIPLLRERIYVINPMTRQF-LVSWLYVLDSVPDLEMISYLPSLLDGLFNM-LSDSSDEVRTLTDT 230 (675)
T ss_pred HHhccccccccCHHHHHHHHHHHHhcCCchHHHH-HHHHHHHHhcCCcHHHHhcchHHHHHHHHH-hcCCcHHHHHHHHH
Confidence 55554432 5667777888888899999974 555666666666532 125667778786 79999999855444
Q ss_pred H----HHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhH----HHHHHHHHHHH
Q 003201 198 A----LQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNE----IFDIMNLLEDR 269 (840)
Q Consensus 198 ~----L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e----~~~il~~l~~~ 269 (840)
+ |.||.. +|... + ....+.-+...+...+|..|-+.|.-+..|.+-.++. ..+++..+.++
T Consensus 231 ~l~~fL~eI~s-~P~s~-----d-----~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc 299 (675)
T KOG0212|consen 231 LLSEFLAEIRS-SPSSM-----D-----YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPC 299 (675)
T ss_pred HHHHHHHHHhc-Ccccc-----C-----cccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccC
Confidence 4 445542 33210 0 0113444556677899999999999999887655443 24556666666
Q ss_pred hccCChHHHHHHHH----HHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCcccccccEEE
Q 003201 270 LQHANGAVVLSTIK----VFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFY 345 (840)
Q Consensus 270 L~~~n~aVvleaik----~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~ 345 (840)
+..+-..-..++.. ..+.+-.+......--+..+...|...++++.-+.|..+|..|..+-.+.|+-+-.|...+|
T Consensus 300 ~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if 379 (675)
T KOG0212|consen 300 LSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIF 379 (675)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHH
Confidence 66544321222211 12222211100000123457777888999888999999999999999999985555554333
Q ss_pred -----EccCCCHHHHHHHHHHHHhccCCCCHH---HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 003201 346 -----CQYNEPSYVKKLKLEMLTAVANESNTY---EIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQF 417 (840)
Q Consensus 346 -----c~~~dp~~IK~~kLdiL~~L~n~~Nv~---~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~~~~v~~Ll~L 417 (840)
-+.|.+.-+-.+.|++|..+|+..|-. .-+..|++-..+...-.......-|.+++... +.+.+...+-++
T Consensus 380 ~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL-~aE~IYr~~a~I 458 (675)
T KOG0212|consen 380 LTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLL-NAERIYRSIADI 458 (675)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHh-CHHHHHHHHHHH
Confidence 234555679999999999999887653 33444444333322223334444444555443 223344455555
Q ss_pred hhhcCc-hhhHHHHHHHHHHHhhCCCc
Q 003201 418 LEMEKD-YVTAEALVLVKDLLRKYPQW 443 (840)
Q Consensus 418 L~~~~~-~v~~e~v~~i~~il~~~p~~ 443 (840)
|....+ .+.+..+..+-.++--.|++
T Consensus 459 Le~e~nl~FAstMV~~Ln~iLlTStEL 485 (675)
T KOG0212|consen 459 LEREENLKFASTMVQALNTILLTSTEL 485 (675)
T ss_pred HhccccchHHHHHHHHHHhhhcccHHH
Confidence 554333 34555555555554444443
No 34
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.00 E-value=1.6e-05 Score=70.07 Aligned_cols=86 Identities=29% Similarity=0.302 Sum_probs=67.5
Q ss_pred HHHHHhhc-CCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHH
Q 003201 102 INFLQRDC-KDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (840)
Q Consensus 102 iNtl~KDl-~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~ 180 (840)
|..|.+-+ +|+|+.+|..|+++++.++.++. .+.+.+.+.|++|.||..|+.++.++-. ++.++.|.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~----~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~~~L~ 68 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDPEA----IPALIELLKDEDPMVRRAAARALGRIGD--------PEAIPALI 68 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHHHH----HHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCHhH----HHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHHHHH
Confidence 34677778 89999999999999999998865 5556666799999999999999998732 33567788
Q ss_pred HHHhcCCChhHHHHHHHHH
Q 003201 181 HLMLNDPDPQVVANCLSAL 199 (840)
Q Consensus 181 ~lLL~D~d~~Vv~~al~~L 199 (840)
+++.+|.+..|..+|+.+|
T Consensus 69 ~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 69 KLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHTC-SSHHHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHhhc
Confidence 8755566777778887765
No 35
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.0083 Score=69.58 Aligned_cols=445 Identities=16% Similarity=0.166 Sum_probs=245.4
Q ss_pred hHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCccc--CCCchHHHHHHHhcCCChhHHHHH
Q 003201 118 GLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI--DADFPPTLKHLMLNDPDPQVVANC 195 (840)
Q Consensus 118 ~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~--~~~~~~~L~~lLL~D~d~~Vv~~a 195 (840)
+.||-.|+++-..++.+.+.|.++..|.+....||-.+++|+.-+-.=.=+-+. -+++++.+..+ |+|+-|.|..-+
T Consensus 376 AAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~-L~DKkplVRsIT 454 (885)
T KOG2023|consen 376 AAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSL-LDDKKPLVRSIT 454 (885)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHH-hccCccceeeee
Confidence 577999999999999999999999999999999999999999877643222111 15677888887 699999997655
Q ss_pred HHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH-------
Q 003201 196 LSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLED------- 268 (840)
Q Consensus 196 l~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~------- 268 (840)
.=.|....+--. +..+ ...-++++..|++++-+.+-|.|-.....++.+--.-.++.--.++.+..
T Consensus 455 CWTLsRys~wv~------~~~~-~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~ 527 (885)
T KOG2023|consen 455 CWTLSRYSKWVV------QDSR-DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFG 527 (885)
T ss_pred eeeHhhhhhhHh------cCCh-HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 444544332100 0001 11224678889999999999999999888887742222222222222222
Q ss_pred HhccCChHHHHHHHHHHHhcc---CCCchhHHHHHHHHHHHHHH---hhcCCCchhHHHHHHHHHHHHhhCCCccccccc
Q 003201 269 RLQHANGAVVLSTIKVFLHLT---LSMTDVHQQVYERIKAPLLT---LVSSGSPEQSYAVLSHLHILVMRAPFIFASDYK 342 (840)
Q Consensus 269 ~L~~~n~aVvleaik~il~l~---~~~~~~~~~~l~rl~~~L~~---lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~ 342 (840)
.-|+.|--|+|.||.++-.-- .+. ...++.+.+||+. +|+++|.++ |--|+.+..++..-..-|.++..
T Consensus 528 kYQ~KNLlILYDAIgtlAdsvg~~Ln~----~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~ 602 (885)
T KOG2023|consen 528 KYQKKNLLILYDAIGTLADSVGHALNK----PAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQ 602 (885)
T ss_pred HHhhcceehHHHHHHHHHHHHHHhcCc----HHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCH
Confidence 226788889999999875321 112 2345557777764 677777764 55566666665432222222110
Q ss_pred E---------------EEEccCCCHH------HHHHHHHHHHhcc-----------CCCCHHHHHHHHHHhhhcCCHHHH
Q 003201 343 H---------------FYCQYNEPSY------VKKLKLEMLTAVA-----------NESNTYEIVTELCEYAANVDIPIA 390 (840)
Q Consensus 343 ~---------------f~c~~~dp~~------IK~~kLdiL~~L~-----------n~~Nv~~Iv~EL~~y~~~~d~~~~ 390 (840)
- .-+..+||.+ .-..+||++..|+ -.+| |++=|+.++.+.-+++|
T Consensus 603 ~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~sn---l~~lll~C~~D~~peVR 679 (885)
T KOG2023|consen 603 PVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSN---LLDLLLQCLQDEVPEVR 679 (885)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhcc---HHHHHHHHhccCChHHH
Confidence 0 0011122211 2234577776654 2334 44445677788888888
Q ss_pred HHHHHHHHHHHhhcC-ChHHHHHHHHHHhhhcC--c--hhhHHHHHHHHHHHhhC-CCcchhHHHHHHhhh---cccCCc
Q 003201 391 RESIRAVGKIALQQY-DVNAIVDRLLQFLEMEK--D--YVTAEALVLVKDLLRKY-PQWSHDCIAVVGSIS---SQNVQE 461 (840)
Q Consensus 391 ~~~i~aI~~la~k~~-~~~~~v~~Ll~LL~~~~--~--~v~~e~v~~i~~il~~~-p~~~~~~~~~l~~l~---~~~i~~ 461 (840)
+-+-.-+|.++.-.+ .+..|++-++.++...- + .+.+.++-.+-.|..+- ++.+.++-.++..+. ......
T Consensus 680 QS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~ 759 (885)
T KOG2023|consen 680 QSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTP 759 (885)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCch
Confidence 888888888876543 23445555555555321 2 23444444444443221 222222222333322 111122
Q ss_pred hHHHHHHHHHHcCcCCCCCC--hHHHHHHHHHhh----ccCCcHHHHHHHHHHHhHHhhcCChhHHHHHHHHHHhhccCC
Q 003201 462 PKAKAALIWMLGEYSQDMQD--APYILESLTENW----EEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADF 535 (840)
Q Consensus 462 ~~ak~a~iwilGEy~~~i~~--~~~il~~l~~~~----~~e~~~~vk~~lLta~~Kl~~~~p~e~~~~l~~vL~~~~~d~ 535 (840)
.....-.+--||--|...++ +| -++.|++.| ..-.+.+.|-....-+.++..-+|......+..+......=.
T Consensus 760 ~tllENtAITIGrLg~~~Pe~vAp-~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~ 838 (885)
T KOG2023|consen 760 KTLLENTAITIGRLGYICPEEVAP-HLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASWS 838 (885)
T ss_pred HHHHHhhhhhhhhhhccCHHhcch-hHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhccc
Confidence 22333334445554443332 22 233333333 222225567777777777777778654433333333222213
Q ss_pred ChHHHhHHHHHHHHccCCHHHHHhhcCCCCCCccccccCCCHHHHHHHHHh
Q 003201 536 HQDVHDRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDE 586 (840)
Q Consensus 536 d~dVrdRA~~Y~rLL~~~~~~a~~vv~~~~p~~~~~~~~~~~~~~~~l~~~ 586 (840)
||+ -+-..+++++|....+ .+. +--+..|.+.+++.++++|-..
T Consensus 839 np~-~~l~~~f~kiL~g~k~----qvg--~~nW~~~~~qf~P~~~erl~a~ 882 (885)
T KOG2023|consen 839 NPE-DDLRDEFYKILQGFKN----QVG--KINWQRFSEQFPPPLKERLQAF 882 (885)
T ss_pred ChH-HHHHHHHHHHHHHHHH----Hhh--hhhHHHHhhcCChhHHHHHHHH
Confidence 555 4445567777754322 221 1112235566777777776543
No 36
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.0014 Score=76.65 Aligned_cols=328 Identities=15% Similarity=0.172 Sum_probs=168.4
Q ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHH
Q 003201 135 YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEAS 214 (840)
Q Consensus 135 ~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~ 214 (840)
-++..+++-|.|||.|||-...-=+.|+ ..||.+ +.+.+.++.+ |+.+++-|..||+.++.+|.+.... ..
T Consensus 99 Lvcna~RkDLQHPNEyiRG~TLRFLckL--kE~ELl--epl~p~Irac-leHrhsYVRrNAilaifsIyk~~~~----L~ 169 (948)
T KOG1058|consen 99 LVCNAYRKDLQHPNEYIRGSTLRFLCKL--KEPELL--EPLMPSIRAC-LEHRHSYVRRNAILAIFSIYKNFEH----LI 169 (948)
T ss_pred HHHHHHhhhccCchHhhcchhhhhhhhc--CcHHHh--hhhHHHHHHH-HhCcchhhhhhhheeehhHHhhhhh----hc
Confidence 4578899999999999998775555554 568887 6789999999 6999999999999999999764211 11
Q ss_pred HHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCh---HHHHHHHHHHHhccCC
Q 003201 215 REREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANG---AVVLSTIKVFLHLTLS 291 (840)
Q Consensus 215 ~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~n~---aVvleaik~il~l~~~ 291 (840)
|+. +.++.+.|.+ +.+|-..-..+=. +...|++-+.+.+.-....+.+-|+ .|+.|-|+-.++-
T Consensus 170 pDa-----peLi~~fL~~--e~DpsCkRNAFi~---L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~--- 236 (948)
T KOG1058|consen 170 PDA-----PELIESFLLT--EQDPSCKRNAFLM---LFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLA--- 236 (948)
T ss_pred CCh-----HHHHHHHHHh--ccCchhHHHHHHH---HHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhc---
Confidence 111 2234444432 2233222211111 1223556565555555555554444 4566666555542
Q ss_pred CchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCccccccc-EEEEc-cCCCHHHHHHHHHHHHhccCCC
Q 003201 292 MTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYK-HFYCQ-YNEPSYVKKLKLEMLTAVANES 369 (840)
Q Consensus 292 ~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~-~f~c~-~~dp~~IK~~kLdiL~~L~n~~ 369 (840)
.+.... |....+..||++.++.++|-+--.+..+. ..|..+..-.. .+-|. ...|--+|..-||-|+.+. .
T Consensus 237 ~p~~~~----~~i~~i~~lL~stssaV~fEaa~tlv~lS-~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~--~ 309 (948)
T KOG1058|consen 237 NPAEKA----RYIRCIYNLLSSTSSAVIFEAAGTLVTLS-NDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELK--A 309 (948)
T ss_pred CHHHhh----HHHHHHHHHHhcCCchhhhhhcceEEEcc-CCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHh--h
Confidence 222222 23345667888778888886644443221 12222211100 00011 1111235555555555554 2
Q ss_pred CHHHHHHHH----HHhhhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHH-HhhhcCc------hhhHHHHHHHHHHHh
Q 003201 370 NTYEIVTEL----CEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQ-FLEMEKD------YVTAEALVLVKDLLR 438 (840)
Q Consensus 370 Nv~~Iv~EL----~~y~~~~d~~~~~~~i~aI~~la~k~~~~~~~v~~Ll~-LL~~~~~------~v~~e~v~~i~~il~ 438 (840)
+-+.|+.+| +..+...|-+++++...-.-.++... +++..++.|-+ +.++.+. ...+..+..+.---.
T Consensus 310 ~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr-Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav 388 (948)
T KOG1058|consen 310 LHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR-NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAV 388 (948)
T ss_pred hhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc-cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhh
Confidence 222333333 23344456666666655444443221 23333333322 2222211 223444444445555
Q ss_pred hCCCcchhHHHHHHhhhcccCCchHHHHHHHHHHcCcCCCCCC-hHHHHHHHHHhhc
Q 003201 439 KYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD-APYILESLTENWE 494 (840)
Q Consensus 439 ~~p~~~~~~~~~l~~l~~~~i~~~~ak~a~iwilGEy~~~i~~-~~~il~~l~~~~~ 494 (840)
++|+.....+.++-+.+.+ .++.+-..++-++-|--+..++ -..+++.+++.|.
T Consensus 389 ~Fp~~aatvV~~ll~fisD--~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~ 443 (948)
T KOG1058|consen 389 KFPEVAATVVSLLLDFISD--SNEAAASDVLMFVREAIEKFPNLRASIIEKLLETFP 443 (948)
T ss_pred cChHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhh
Confidence 6777665555444444322 2344444555666665555554 2345555555553
No 37
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.0025 Score=75.24 Aligned_cols=315 Identities=17% Similarity=0.211 Sum_probs=185.9
Q ss_pred HhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhh
Q 003201 141 GLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREAL 220 (840)
Q Consensus 141 ~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~l 220 (840)
.|++.+++--=+|...+|+.=+..-..|.. -=+.+.|++= |+.+|.-||+-|+++|..|+.. |.|++.
T Consensus 76 lKLias~~f~dKRiGYLaamLlLdE~qdvl--lLltNslknD-L~s~nq~vVglAL~alg~i~s~------Emardl--- 143 (866)
T KOG1062|consen 76 LKLIASDNFLDKRIGYLAAMLLLDERQDLL--LLLTNSLKND-LNSSNQYVVGLALCALGNICSP------EMARDL--- 143 (866)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhccchHHH--HHHHHHHHhh-ccCCCeeehHHHHHHhhccCCH------HHhHHh---
Confidence 344455555556677777765555444432 1123444443 4667888888888888888642 344432
Q ss_pred ccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHH
Q 003201 221 ISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVY 300 (840)
Q Consensus 221 i~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l 300 (840)
. |-+.+|++ ..+|+..-|.+-+..++....|+....+++....+|...+++|+..++.++..+....++.. ..+
T Consensus 144 -a-peVe~Ll~---~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l-~~f 217 (866)
T KOG1062|consen 144 -A-PEVERLLQ---HRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDAL-SYF 217 (866)
T ss_pred -h-HHHHHHHh---CCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHH-HHH
Confidence 1 23455553 47888888888888888888888888888888888888888888888888776643322210 112
Q ss_pred HHHHHHHHH----hhcC-----------CCchhHHHHHHHHHHHHhhCCCc-----------cc-----cc---------
Q 003201 301 ERIKAPLLT----LVSS-----------GSPEQSYAVLSHLHILVMRAPFI-----------FA-----SD--------- 340 (840)
Q Consensus 301 ~rl~~~L~~----lLss-----------~~~nirY~aL~~l~~l~~~~p~~-----------~~-----~~--------- 340 (840)
+++.+-|++ +.++ ++|-++.-.|+.+..+-+..++. +. ++
T Consensus 218 r~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~ 297 (866)
T KOG1062|consen 218 RDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYEC 297 (866)
T ss_pred HHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHH
Confidence 222222222 2211 24555555665555555444321 00 00
Q ss_pred ccEEEEc------------------cCCCHHHHHHHHHHHHhccCCC--CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Q 003201 341 YKHFYCQ------------------YNEPSYVKKLKLEMLTAVANES--NTYEIVTELCEYAANVDIPIARESIRAVGKI 400 (840)
Q Consensus 341 ~~~f~c~------------------~~dp~~IK~~kLdiL~~L~n~~--Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~l 400 (840)
++.++|. .|+|.-||..+|+.|.++++.+ -+++==.-+++++.+.|+.++|++..-.-.+
T Consensus 298 V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~l 377 (866)
T KOG1062|consen 298 VRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYAL 377 (866)
T ss_pred HHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 1112222 2344445555555555554322 2333333466899999999999887765444
Q ss_pred HhhcCChHHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhC-CCcchhHHHHHHhhhc--ccCCchHHHHHHHHHHcCc
Q 003201 401 ALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKY-PQWSHDCIAVVGSISS--QNVQEPKAKAALIWMLGEY 475 (840)
Q Consensus 401 a~k~~~~~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~-p~~~~~~~~~l~~l~~--~~i~~~~ak~a~iwilGEy 475 (840)
.. -.++...++-|+++|....+++..++...+..+..+| |+.+=+ +..+.+++. -+.-.+++...++-+|++=
T Consensus 378 vn-~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~-idtml~Vl~~aG~~V~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 378 VN-ESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWH-IDTMLKVLKTAGDFVNDDVVNNLLRLIANA 453 (866)
T ss_pred hc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhH-HHHHHHHHHhcccccchhhHHHHHHHHhcC
Confidence 32 1256778999999999998899999999999999887 443311 222222221 1233445566667777764
No 38
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.014 Score=67.39 Aligned_cols=259 Identities=14% Similarity=0.107 Sum_probs=182.6
Q ss_pred hhhhhhhhcc-CCCcchHHHHHHHHHHhccCCCchHHHH-----HHHHHhhcCCCChhhHhHHHHHhhCCCh--hhhHH-
Q 003201 64 VFGEMVMCSA-TSDIVLKKMCYLYVGNYAKVNPDLALLT-----INFLQRDCKDEDPMIRGLALRSLCSLRV--ANLVE- 134 (840)
Q Consensus 64 lF~~Vi~l~~-S~d~~~KkL~YLyl~~~~~~~~dl~lL~-----iNtl~KDl~~~Np~ir~LALr~l~~I~~--~~i~e- 134 (840)
..+..|+++. ..+..++--.=-++.+.+...+|..-.+ +-.|.+=+.++++.++.-|.-++|+|.. +..-.
T Consensus 110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~ 189 (514)
T KOG0166|consen 110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDY 189 (514)
T ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHH
Confidence 4555567775 4446777777778888887666643333 3347777899999999999999999844 33333
Q ss_pred ----HHHHHHHhccCCCCh-HHHHHHHHHHHHHHhhc-CCcc--cCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhc
Q 003201 135 ----YLVGPLGLGLKDNNS-YVRTVAVIGVLKLYHIS-APTC--IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (840)
Q Consensus 135 ----~l~~~v~~~L~d~~p-yVRK~Aala~~kl~~~~-p~~~--~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~ 206 (840)
-++.++...+..+++ -..|.|.-++-++++-. |.-- .-...++.|..+ +.+.|+.|+..|.-++.++....
T Consensus 190 vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~l-l~~~D~~Vl~Da~WAlsyLsdg~ 268 (514)
T KOG0166|consen 190 VLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRL-LHSTDEEVLTDACWALSYLTDGS 268 (514)
T ss_pred HHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHhcCC
Confidence 345677777777766 67788999999999754 5321 114456778776 69999999999999999987432
Q ss_pred cCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHH-----HHHHHHHhc-cCChHHHHH
Q 003201 207 ASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDI-----MNLLEDRLQ-HANGAVVLS 280 (840)
Q Consensus 207 ~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~i-----l~~l~~~L~-~~n~aVvle 280 (840)
.. .+...+.-..+.+|...|..+++=.+.-.|+.+....-.+.....-+ +..+..++. +....+.-|
T Consensus 269 ne-------~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkE 341 (514)
T KOG0166|consen 269 NE-------KIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKE 341 (514)
T ss_pred hH-------HHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHH
Confidence 21 12233444567888888888888888999999999777776665544 455677776 455678899
Q ss_pred HHHHHHhccCCCchhHHHHHH-HHHHHHHHhhcCCCchhHHHHHHHHHHHH
Q 003201 281 TIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILV 330 (840)
Q Consensus 281 aik~il~l~~~~~~~~~~~l~-rl~~~L~~lLss~~~nirY~aL~~l~~l~ 330 (840)
|+.++.+++.....-.+.++. .+.++|+.+|++.+-.+|--|.-.|.-+.
T Consensus 342 AcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 342 ACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLT 392 (514)
T ss_pred HHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhc
Confidence 999999988765432233333 46677888888888777777766665544
No 39
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.66 E-value=0.094 Score=66.26 Aligned_cols=161 Identities=16% Similarity=0.099 Sum_probs=118.3
Q ss_pred CcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCChh--hh--HHHHHHHHHhccCCCChHH
Q 003201 76 DIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVA--NL--VEYLVGPLGLGLKDNNSYV 151 (840)
Q Consensus 76 d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~--~i--~e~l~~~v~~~L~d~~pyV 151 (840)
++..=++.|.|+..-..--.. .=-..+.+..-+..+-+-+|.-|||+++.|... .+ -+.+...|..-+.|.+.-|
T Consensus 793 d~~~a~li~~~la~~r~f~~s-fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasV 871 (1692)
T KOG1020|consen 793 DDDDAKLIVFYLAHARSFSQS-FDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASV 871 (1692)
T ss_pred cchhHHHHHHHHHhhhHHHHh-hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHH
Confidence 566667888887655322111 123455666667788899999999999998542 22 3556667788899999999
Q ss_pred HHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHH
Q 003201 152 RTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLN 231 (840)
Q Consensus 152 RK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~ 231 (840)
|-+|+-=+.|..--+|+.+ ..+.+.+.+- ..|+-.+|.=.++..+.+|+...|+.. .+ ..+.-++++
T Consensus 872 REAaldLvGrfvl~~~e~~--~qyY~~i~er-IlDtgvsVRKRvIKIlrdic~e~pdf~---------~i-~~~cakmlr 938 (1692)
T KOG1020|consen 872 REAALDLVGRFVLSIPELI--FQYYDQIIER-ILDTGVSVRKRVIKILRDICEETPDFS---------KI-VDMCAKMLR 938 (1692)
T ss_pred HHHHHHHHhhhhhccHHHH--HHHHHHHHhh-cCCCchhHHHHHHHHHHHHHHhCCChh---------hH-HHHHHHHHH
Confidence 9999999999999999988 6788888777 578888999999999999998766521 11 235678888
Q ss_pred hhccCChhHHHHHHHHHHh
Q 003201 232 RIKEFSEWAQCLVLELVAK 250 (840)
Q Consensus 232 ~l~~~~~W~Qi~iL~lL~~ 250 (840)
++++-..-.|-.+.+.+.+
T Consensus 939 Rv~DEEg~I~kLv~etf~k 957 (1692)
T KOG1020|consen 939 RVNDEEGNIKKLVRETFLK 957 (1692)
T ss_pred HhccchhHHHHHHHHHHHH
Confidence 8876655556666666655
No 40
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.0096 Score=70.37 Aligned_cols=177 Identities=17% Similarity=0.185 Sum_probs=95.0
Q ss_pred HHHHHHHhhcCC---CChhhHhHHHHHhhCCChhh--hHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCC
Q 003201 100 LTINFLQRDCKD---EDPMIRGLALRSLCSLRVAN--LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDAD 174 (840)
Q Consensus 100 L~iNtl~KDl~~---~Np~ir~LALr~l~~I~~~~--i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~ 174 (840)
|++|.+..-+.. .||+-+++-+|..+.....+ ...++.+.+-.+|+|++.-|-=.|+.++..++..++..+ ..
T Consensus 205 la~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l--~p 282 (865)
T KOG1078|consen 205 LAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSREL--AP 282 (865)
T ss_pred HHHHHHHHHHccccccchhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhc--ch
Confidence 344444444332 45666666665555543322 233556666666666666666666666666666665554 22
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCC
Q 003201 175 FPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL 254 (840)
Q Consensus 175 ~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~ 254 (840)
-+..|.-+ ++.+.+....+|+..|++++...|... + .||
T Consensus 283 avs~Lq~f-lssp~~~lRfaAvRtLnkvAm~~P~~v-----------~------------~cN----------------- 321 (865)
T KOG1078|consen 283 AVSVLQLF-LSSPKVALRFAAVRTLNKVAMKHPQAV-----------T------------VCN----------------- 321 (865)
T ss_pred HHHHHHHH-hcCcHHHHHHHHHHHHHHHHHhCCccc-----------c------------ccc-----------------
Confidence 34444443 455666666666666666654433210 0 000
Q ss_pred ChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCC
Q 003201 255 DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP 334 (840)
Q Consensus 255 ~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p 334 (840)
--+++++...|-++-.=|+-+.++-... .-.+|+..++.+|++.=+-|-+.++.+.+..++.++|
T Consensus 322 ---------~elE~lItd~NrsIat~AITtLLKTG~e------~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp 386 (865)
T KOG1078|consen 322 ---------LDLESLITDSNRSIATLAITTLLKTGTE------SSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFP 386 (865)
T ss_pred ---------hhHHhhhcccccchhHHHHHHHHHhcch------hHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhcc
Confidence 1133344445544444444444443321 1235666677777776666777778888888777776
No 41
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.57 E-value=0.2 Score=59.26 Aligned_cols=158 Identities=21% Similarity=0.180 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHhcCCCccc-hhhhh----h-hhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhh
Q 003201 43 SKRELFKKVISYMTIGIDVSA-VFGEM----V-MCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMI 116 (840)
Q Consensus 43 ~kk~~lkKlI~~m~lG~DvS~-lF~~V----i-~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~i 116 (840)
+-|..+-|+|--..-|.|.-- =|.|= + -++--+|+--+-.|-=.++++++. .-++ -.|.+++-|..+.+|++
T Consensus 415 qerhllVkvidriLyklDdlvrpYVhkILvViepllided~yar~egreIisnLaka-aGla-~mistmrpDidn~deYV 492 (1172)
T KOG0213|consen 415 QERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA-AGLA-TMISTMRPDIDNKDEYV 492 (1172)
T ss_pred hhhhhHHHHHHHHHHhhcccchhceeeeEEEeecceecchHHHhhchHHHHHHHHHH-hhhH-HHHHhhcCCcccccHHH
Confidence 445555566655554543211 12221 1 244456666666676677777643 3333 45789999999999999
Q ss_pred HhHHHHHhhCCChhhhHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHhhcCCccc--CCCchHHHHHHHhcCCChhH--
Q 003201 117 RGLALRSLCSLRVANLVEYLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHISAPTCI--DADFPPTLKHLMLNDPDPQV-- 191 (840)
Q Consensus 117 r~LALr~l~~I~~~~i~e~l~~~v~~~L~d~-~pyVRK~Aala~~kl~~~~p~~~~--~~~~~~~L~~lLL~D~d~~V-- 191 (840)
|--.-|+.+-+...-=++.+.+.++....++ +.--|.+.+-++.++.-+..-.+. -..+++.+... +.|...-|
T Consensus 493 Rnttarafavvasalgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~g-l~De~qkVR~ 571 (1172)
T KOG0213|consen 493 RNTTARAFAVVASALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHG-LKDEQQKVRT 571 (1172)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHh-hcccchhhhh
Confidence 9776666665444433556677777777776 778888888888777765433221 13456777776 57776554
Q ss_pred -HHHHHHHHHHHH
Q 003201 192 -VANCLSALQEIW 203 (840)
Q Consensus 192 -v~~al~~L~eI~ 203 (840)
-++|+++|.|..
T Consensus 572 itAlalsalaeaa 584 (1172)
T KOG0213|consen 572 ITALALSALAEAA 584 (1172)
T ss_pred HHHHHHHHHHHhc
Confidence 456666666653
No 42
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0032 Score=68.30 Aligned_cols=298 Identities=18% Similarity=0.200 Sum_probs=193.8
Q ss_pred hhhhccCCCcchHHHHHHHHHHhccCCCchHH----HHHHHHHhhcCCCChhhHhHHHHHhhCCChhh-----hHH-HHH
Q 003201 68 MVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL----LTINFLQRDCKDEDPMIRGLALRSLCSLRVAN-----LVE-YLV 137 (840)
Q Consensus 68 Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~l----L~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~-----i~e-~l~ 137 (840)
|.-++++.+-.+..-+--.+.+++-....-.+ +-..-+...+..++-.+||.|..++.++.+-+ ++. --.
T Consensus 90 vl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL 169 (550)
T KOG4224|consen 90 VLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGAL 169 (550)
T ss_pred HHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccch
Confidence 44577888888888888888888755443211 22233666677788899999999999875532 221 123
Q ss_pred HHHHhccCCCChHHHHHHHHHHHHHHhhcCC--cccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHH
Q 003201 138 GPLGLGLKDNNSYVRTVAVIGVLKLYHISAP--TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASR 215 (840)
Q Consensus 138 ~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~--~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~ 215 (840)
.++.++-+.++--||+.|.-+++.|-+.... .+...+-++-|.++ +...|+.|..-|..++.-|.-... .+
T Consensus 170 ~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsl-l~s~d~dvqyycttaisnIaVd~~------~R 242 (550)
T KOG4224|consen 170 EPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSL-LKSGDLDVQYYCTTAISNIAVDRR------AR 242 (550)
T ss_pred hhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhh-hccCChhHHHHHHHHhhhhhhhHH------HH
Confidence 4566677889999999998888887665432 23356778888897 799999999999999988864221 11
Q ss_pred HHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHH-----HHHHHHHhccCChHHHHHHHHHHHhc--
Q 003201 216 EREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDI-----MNLLEDRLQHANGAVVLSTIKVFLHL-- 288 (840)
Q Consensus 216 ~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~i-----l~~l~~~L~~~n~aVvleaik~il~l-- 288 (840)
.+..---+..+..|...+.+.++-.+|..=-.|..+.... +-...+ +..+..+||+..--.+++.+-||-.+
T Consensus 243 k~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisi 321 (550)
T KOG4224|consen 243 KILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISI 321 (550)
T ss_pred HHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccc
Confidence 1111122336777888778888888877766666654332 222222 34566778887766788888888443
Q ss_pred cCCCchh-HHHHHHHHHHHHHHhhcCCCch-hHHHHHHHHHHHHhhCCCcccccccEEEEccCCCHHHHHHHHHHHHhcc
Q 003201 289 TLSMTDV-HQQVYERIKAPLLTLVSSGSPE-QSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVA 366 (840)
Q Consensus 289 ~~~~~~~-~~~~l~rl~~~L~~lLss~~~n-irY~aL~~l~~l~~~~p~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L~ 366 (840)
.+-.+.+ .. .....||+++|.-++.| +|..+...+.-++..+.. ..+.|
T Consensus 322 hplNe~lI~d---agfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~----n~~~i---------------------- 372 (550)
T KOG4224|consen 322 HPLNEVLIAD---AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEH----NVSVI---------------------- 372 (550)
T ss_pred ccCcccceec---ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhh----hhHHH----------------------
Confidence 3322221 11 12345899999877766 888777777766643210 00101
Q ss_pred CCCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcC
Q 003201 367 NESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQY 405 (840)
Q Consensus 367 n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~ 405 (840)
-++++ +..|.+.+.+...+|+.++.-+|+.+|..-.
T Consensus 373 ~esgA---i~kl~eL~lD~pvsvqseisac~a~Lal~d~ 408 (550)
T KOG4224|consen 373 RESGA---IPKLIELLLDGPVSVQSEISACIAQLALNDN 408 (550)
T ss_pred hhcCc---hHHHHHHHhcCChhHHHHHHHHHHHHHhccc
Confidence 12222 4456677888999999999999999987643
No 43
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.46 E-value=0.29 Score=59.38 Aligned_cols=213 Identities=15% Similarity=0.117 Sum_probs=119.6
Q ss_pred hHhHHHHHhhCCCh------hhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCCh
Q 003201 116 IRGLALRSLCSLRV------ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDP 189 (840)
Q Consensus 116 ir~LALr~l~~I~~------~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~ 189 (840)
+++-+|..|+-+.. +++-.-+...++--+..+..-|||+|+.|+..+-...+.... .+.++.|.+-|-+-..+
T Consensus 149 i~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly-~~li~~Ll~~L~~~~q~ 227 (1233)
T KOG1824|consen 149 IKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLY-VELIEHLLKGLSNRTQM 227 (1233)
T ss_pred hHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHhccCCCCch
Confidence 66666666665422 233334444444445677889999999999999887775442 23334433332223344
Q ss_pred hHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHH---HhcCCCChh-HHHHHHHH
Q 003201 190 QVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELV---AKYVPLDSN-EIFDIMNL 265 (840)
Q Consensus 190 ~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL---~~y~p~~~~-e~~~il~~ 265 (840)
.-+..-+..|.+|++..+.-.-. ..+ .+. +.+...++...+-++=+.-+.|+.+ -+++|.+-. -...+++.
T Consensus 228 ~~~rt~Iq~l~~i~r~ag~r~~~-h~~---~iv-p~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l 302 (1233)
T KOG1824|consen 228 SATRTYIQCLAAICRQAGHRFGS-HLD---KIV-PLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINL 302 (1233)
T ss_pred HHHHHHHHHHHHHHHHhcchhhc-ccc---hhh-HHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHH
Confidence 44555677788887654421100 000 111 2344444444443444444444443 344443210 01223333
Q ss_pred HHHHhcc----------------------------------CChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhh
Q 003201 266 LEDRLQH----------------------------------ANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLV 311 (840)
Q Consensus 266 l~~~L~~----------------------------------~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lL 311 (840)
+...+.. .+=-|..+|+||+..+-.+..+.-..++..+.+.+++-+
T Consensus 303 ~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~Rf 382 (1233)
T KOG1824|consen 303 CLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRF 382 (1233)
T ss_pred HHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHH
Confidence 3332210 112478899999988766655555567777888888888
Q ss_pred cCCCchhHHHHHHHHHHHHhhCC
Q 003201 312 SSGSPEQSYAVLSHLHILVMRAP 334 (840)
Q Consensus 312 ss~~~nirY~aL~~l~~l~~~~p 334 (840)
..++-|++--+......+...-|
T Consensus 383 kEREEnVk~dvf~~yi~ll~qt~ 405 (1233)
T KOG1824|consen 383 KEREENVKADVFHAYIALLKQTR 405 (1233)
T ss_pred HHHhhhHHHHHHHHHHHHHHcCC
Confidence 88889999988888777765544
No 44
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.089 Score=62.34 Aligned_cols=337 Identities=14% Similarity=0.167 Sum_probs=200.1
Q ss_pred chHHHHHHHHHHhccCCCch-HHHHHHHHHhhcCCCChhhHhHHHHHhhCCC-------hhhhHHHHHHHHHhccCCCCh
Q 003201 78 VLKKMCYLYVGNYAKVNPDL-ALLTINFLQRDCKDEDPMIRGLALRSLCSLR-------VANLVEYLVGPLGLGLKDNNS 149 (840)
Q Consensus 78 ~~KkL~YLyl~~~~~~~~dl-~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~-------~~~i~e~l~~~v~~~L~d~~p 149 (840)
..-|-+-..|..|+....|. .-.+.-.+..-+++||=..|-.|.-+.|||- ...++....+.+.+.+.|++-
T Consensus 341 np~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl 420 (859)
T KOG1241|consen 341 NPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSL 420 (859)
T ss_pred cHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchh
Confidence 33455555566665554443 3366677777899999999999999999983 345788888999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhc--CCChhHHHHHHHHHHHHHhhccCcchHHHHHH--Hhhcc---
Q 003201 150 YVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLN--DPDPQVVANCLSALQEIWSLEASTSEEASRER--EALIS--- 222 (840)
Q Consensus 150 yVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~--D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~--~~li~--- 222 (840)
.||.+|+-++.|+....|+.+........+...++. ...|.|..|+.-++..+.+.-+.. .+.. ....+
T Consensus 421 ~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA----~~s~~qt~~~t~~y 496 (859)
T KOG1241|consen 421 WVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEA----AVSNGQTDPATPFY 496 (859)
T ss_pred hhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHh----ccCCCCCCccchhH
Confidence 999999999999999999887544433322222211 347899999998888876422110 0000 00111
Q ss_pred HHHHHHHHHhhc--c-CChhHHHHHHHHHHhcCCCChhHHHH--------HHHHHHHHhc-----cCC-------hHHHH
Q 003201 223 KPVIYYLLNRIK--E-FSEWAQCLVLELVAKYVPLDSNEIFD--------IMNLLEDRLQ-----HAN-------GAVVL 279 (840)
Q Consensus 223 ~~~~~~Ll~~l~--~-~~~W~Qi~iL~lL~~y~p~~~~e~~~--------il~~l~~~L~-----~~n-------~aVvl 279 (840)
..++..|+..-. + -..=+.+..-+.|.......+++... ++..+...++ .+. -+++.
T Consensus 497 ~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc 576 (859)
T KOG1241|consen 497 EAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLC 576 (859)
T ss_pred HHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHH
Confidence 123444544211 1 12235555556555544333333222 2333443333 111 13445
Q ss_pred HHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcC-CCchhHHHHHHHHHHHHhhCCCcccccccEEE------EccCCCH
Q 003201 280 STIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSS-GSPEQSYAVLSHLHILVMRAPFIFASDYKHFY------CQYNEPS 352 (840)
Q Consensus 280 eaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss-~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~------c~~~dp~ 352 (840)
.++..++.--.+ +. .++-+.+.+.+++.+.+ ++.-+.--++-.+..++..-..-|.+|+..|. ...-.+.
T Consensus 577 ~~Lq~i~rk~~~--~~-~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~ 653 (859)
T KOG1241|consen 577 NTLQSIIRKVGS--DI-REVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEY 653 (859)
T ss_pred HHHHHHHHHccc--cc-hhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHH
Confidence 555555443222 21 23445566777888876 34444445555555555544445666665552 1123445
Q ss_pred HHHHHHHHHHHhccCCCC------HHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHhhcC-ChHHHHHHHHHHhhhc
Q 003201 353 YVKKLKLEMLTAVANESN------TYEIVTELCEYAAN--VDIPIARESIRAVGKIALQQY-DVNAIVDRLLQFLEME 421 (840)
Q Consensus 353 ~IK~~kLdiL~~L~n~~N------v~~Iv~EL~~y~~~--~d~~~~~~~i~aI~~la~k~~-~~~~~v~~Ll~LL~~~ 421 (840)
.|-.-++-+.-.||+.=+ ...+...|...+.+ .+-+++..+....|.||.... +...|++.++.++...
T Consensus 654 qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~a 731 (859)
T KOG1241|consen 654 QVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQA 731 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 677777777777776532 23455556666655 356778888888999998874 5677888888777653
No 45
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.26 E-value=0.067 Score=61.16 Aligned_cols=256 Identities=16% Similarity=0.081 Sum_probs=162.3
Q ss_pred ChhhHhHHHHHhhCCChhhhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhH
Q 003201 113 DPMIRGLALRSLCSLRVANLVEYLVGPLGLGL-KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQV 191 (840)
Q Consensus 113 Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L-~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~V 191 (840)
++-.++- |..|.-++ +. ..+.+...| .|.++-|+..|++++... +. +..++.|... +.|.+++|
T Consensus 38 deRL~Ah-LdgL~~~G-~~----a~~~L~~aL~~d~~~ev~~~aa~al~~~---~~-----~~~~~~L~~~-L~d~~~~v 102 (410)
T TIGR02270 38 EERLLAH-VDGLVLAG-KA----ATELLVSALAEADEPGRVACAALALLAQ---ED-----ALDLRSVLAV-LQAGPEGL 102 (410)
T ss_pred HHHHHHH-HHHHHHhh-Hh----HHHHHHHHHhhCCChhHHHHHHHHHhcc---CC-----hHHHHHHHHH-hcCCCHHH
Confidence 3444444 55555444 33 444455556 478899998887777532 11 2236788887 68999999
Q ss_pred HHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhc
Q 003201 192 VANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQ 271 (840)
Q Consensus 192 v~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~ 271 (840)
..++..+|.+|.. ......|+..+.+.+|+.+..++..+..-.. + -.+.+.+.|+
T Consensus 103 r~aaa~ALg~i~~------------------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~------~~~~L~~~L~ 157 (410)
T TIGR02270 103 CAGIQAALGWLGG------------------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH-D------PGPALEAALT 157 (410)
T ss_pred HHHHHHHHhcCCc------------------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-C------hHHHHHHHhc
Confidence 9999999988732 1234566777788999999999988876432 1 2356778888
Q ss_pred cCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCcccccccEEEEccCCC
Q 003201 272 HANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEP 351 (840)
Q Consensus 272 ~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~c~~~dp 351 (840)
+.++.|.-+|++++-.+.... ..+.|...+.+.++++|..++..+..+-. +.... .+..|+-..+
T Consensus 158 d~d~~Vra~A~raLG~l~~~~----------a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A~~-~l~~~~~~~g-- 222 (410)
T TIGR02270 158 HEDALVRAAALRALGELPRRL----------SESTLRLYLRDSDPEVRFAALEAGLLAGS--RLAWG-VCRRFQVLEG-- 222 (410)
T ss_pred CCCHHHHHHHHHHHHhhcccc----------chHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhHHH-HHHHHHhccC--
Confidence 999999999999998875421 33445667889999999999999976632 22111 1111221222
Q ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCchhhHHHHH
Q 003201 352 SYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALV 431 (840)
Q Consensus 352 ~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~~~~v~~Ll~LL~~~~~~v~~e~v~ 431 (840)
.+....... +..+.... .++.-|...+.+.+ +++.++.++|.+..- ..+..|++.++. +++..-+-.
T Consensus 223 ~~~~~~l~~-~lal~~~~---~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p-----~av~~L~~~l~d--~~~aR~A~e 289 (410)
T TIGR02270 223 GPHRQRLLV-LLAVAGGP---DAQAWLRELLQAAA--TRREALRAVGLVGDV-----EAAPWCLEAMRE--PPWARLAGE 289 (410)
T ss_pred ccHHHHHHH-HHHhCCch---hHHHHHHHHhcChh--hHHHHHHHHHHcCCc-----chHHHHHHHhcC--cHHHHHHHH
Confidence 234433333 33333222 67777777776644 888999999987643 356667766654 334444444
Q ss_pred HHHHH
Q 003201 432 LVKDL 436 (840)
Q Consensus 432 ~i~~i 436 (840)
.+..|
T Consensus 290 A~~~I 294 (410)
T TIGR02270 290 AFSLI 294 (410)
T ss_pred HHHHh
Confidence 44444
No 46
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.23 E-value=0.02 Score=65.40 Aligned_cols=90 Identities=18% Similarity=0.071 Sum_probs=65.8
Q ss_pred HHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHH
Q 003201 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (840)
Q Consensus 101 ~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~ 180 (840)
++..+.+-+.|+++-+|.-|.+.|+.|+.+..... +...|.|.+|.||..++ +.+.....+ -.+.+.
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~----L~~~L~~~~p~vR~aal-~al~~r~~~--------~~~~L~ 153 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPW----LEPLLAASEPPGRAIGL-AALGAHRHD--------PGPALE 153 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHH----HHHHhcCCChHHHHHHH-HHHHhhccC--------hHHHHH
Confidence 47888888888888889999999998888765544 55666888888888777 444333221 234666
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHh
Q 003201 181 HLMLNDPDPQVVANCLSALQEIWS 204 (840)
Q Consensus 181 ~lLL~D~d~~Vv~~al~~L~eI~~ 204 (840)
.+ ++|.|+.|..+|+.+|.++..
T Consensus 154 ~~-L~d~d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 154 AA-LTHEDALVRAAALRALGELPR 176 (410)
T ss_pred HH-hcCCCHHHHHHHHHHHHhhcc
Confidence 76 588888888888888887753
No 47
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.22 E-value=0.0015 Score=79.97 Aligned_cols=142 Identities=20% Similarity=0.175 Sum_probs=110.3
Q ss_pred cchhhhhhhhc----cCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcC-CCChhhHhHHHHHhhCC--ChhhhHH
Q 003201 62 SAVFGEMVMCS----ATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCK-DEDPMIRGLALRSLCSL--RVANLVE 134 (840)
Q Consensus 62 S~lF~~Vi~l~----~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~-~~Np~ir~LALr~l~~I--~~~~i~e 134 (840)
+.+-|-|++.+ -.+|.++..-+||++..+---..+.+--.-..|..=+. +|||.||+.+.-.+|.+ +-|.+++
T Consensus 918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie 997 (1251)
T KOG0414|consen 918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIE 997 (1251)
T ss_pred HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccc
Confidence 33445555655 45678888999999987755444443333333444444 89999999999999986 6689999
Q ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhc
Q 003201 135 YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (840)
Q Consensus 135 ~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~ 206 (840)
...+.+-+-|.|.++-|||+|++.+.++...+- +.-.+.+..+..+ +.|+|+.+..-|=..+.|+..+.
T Consensus 998 ~~T~~Ly~rL~D~~~~vRkta~lvlshLILndm--iKVKGql~eMA~c-l~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 998 PWTEHLYRRLRDESPSVRKTALLVLSHLILNDM--IKVKGQLSEMALC-LEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh--hHhcccHHHHHHH-hcCCcHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999887543 3337888888887 69999999888888899997653
No 48
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.21 E-value=0.27 Score=59.71 Aligned_cols=329 Identities=18% Similarity=0.197 Sum_probs=184.9
Q ss_pred cCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCccc
Q 003201 92 KVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI 171 (840)
Q Consensus 92 ~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~ 171 (840)
..+-|.-.|++|-+.++|+... -.-..+--..+...+.++|.|.++-|..-|+-|+.-+-.+-|+.-.
T Consensus 16 ssDKDfRfMAtsDLm~eLqkds------------i~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~l 83 (1233)
T KOG1824|consen 16 SSDKDFRFMATSDLMTELQKDS------------IKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQL 83 (1233)
T ss_pred CCCcchhhhhHHHHHHHHHhhh------------hhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHH
Confidence 4566777788888888887651 1112344567788899999999999999999999988877665321
Q ss_pred CCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHh----hccCChh--HHHHHH
Q 003201 172 DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNR----IKEFSEW--AQCLVL 245 (840)
Q Consensus 172 ~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~----l~~~~~W--~Qi~iL 245 (840)
...++.|..-|+.+.+..==.+++.+..-|..-.|... ..+...++.+++.+ +..+.+. .+|.+|
T Consensus 84 -e~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~--------~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~l 154 (1233)
T KOG1824|consen 84 -ETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSS--------SFLAATVCKRITPKLKQAISKQEDVSAIKCEVL 154 (1233)
T ss_pred -HHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccc--------cccccHHHHHHHHHHHHHhhhcccchhhHHHHH
Confidence 23344444333445444434456666666665444221 11223334444443 3333333 588888
Q ss_pred HHHHhcC----CCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCC-CchhHH
Q 003201 246 ELVAKYV----PLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSG-SPEQSY 320 (840)
Q Consensus 246 ~lL~~y~----p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~-~~nirY 320 (840)
+++..|. --=++.-..++..+.+.|++.-.+|.--|+-++-++..+.+. .++..++.-|.+=|+.+ .+..--
T Consensus 155 Dil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~---~ly~~li~~Ll~~L~~~~q~~~~r 231 (1233)
T KOG1824|consen 155 DILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR---DLYVELIEHLLKGLSNRTQMSATR 231 (1233)
T ss_pred HHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCCCCchHHHH
Confidence 8876653 212233456788888899988899999888888887654322 34444555555544422 111122
Q ss_pred HHHHHHHHHHhhCCCcccccccEE------EEc--cCCCHHHHHHHHHHHHhc--cCCCCHHHHHHH----HHHhhh---
Q 003201 321 AVLSHLHILVMRAPFIFASDYKHF------YCQ--YNEPSYVKKLKLEMLTAV--ANESNTYEIVTE----LCEYAA--- 383 (840)
Q Consensus 321 ~aL~~l~~l~~~~p~~~~~~~~~f------~c~--~~dp~~IK~~kLdiL~~L--~n~~Nv~~Iv~E----L~~y~~--- 383 (840)
.-++.|..|+.....=|..|.... ||- ..||...|..-|+.+-.. -++.|+..++.| +++|+.
T Consensus 232 t~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDP 311 (1233)
T KOG1824|consen 232 TYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDP 311 (1233)
T ss_pred HHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCC
Confidence 233444555555555566665422 452 234445666555554332 355665544444 445553
Q ss_pred ----cC-------------CHH--------------HHHHHHHHHHHHHhhc----CChH-HHHHHHHHHhhhcCchhhH
Q 003201 384 ----NV-------------DIP--------------IARESIRAVGKIALQQ----YDVN-AIVDRLLQFLEMEKDYVTA 427 (840)
Q Consensus 384 ----~~-------------d~~--------------~~~~~i~aI~~la~k~----~~~~-~~v~~Ll~LL~~~~~~v~~ 427 (840)
+. |++ +||++.+.|..+...- |+.. ..-..++.-++..-+.|..
T Consensus 312 Ny~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~ 391 (1233)
T KOG1824|consen 312 NYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKA 391 (1233)
T ss_pred CCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHH
Confidence 00 111 4566666665443321 1111 1112233334444567888
Q ss_pred HHHHHHHHHHhhCCCcc
Q 003201 428 EALVLVKDLLRKYPQWS 444 (840)
Q Consensus 428 e~v~~i~~il~~~p~~~ 444 (840)
+++.+..+++++.|.+.
T Consensus 392 dvf~~yi~ll~qt~~~~ 408 (1233)
T KOG1824|consen 392 DVFHAYIALLKQTRPVI 408 (1233)
T ss_pred HHHHHHHHHHHcCCCCc
Confidence 88888888888877654
No 49
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.21 E-value=0.028 Score=60.05 Aligned_cols=230 Identities=19% Similarity=0.243 Sum_probs=139.6
Q ss_pred HHHHhccC-CCChHHHHHHHHHHHHH--HhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHH
Q 003201 138 GPLGLGLK-DNNSYVRTVAVIGVLKL--YHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEAS 214 (840)
Q Consensus 138 ~~v~~~L~-d~~pyVRK~Aala~~kl--~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~ 214 (840)
..+...|. ..+|+++.+|..++... |..+.+.+.+-+-++.+.++ ++++|+.|...|+.++..+.....
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~l-L~~p~~~vr~~AL~aL~Nls~~~e------- 86 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSL-LNDPNPSVREKALNALNNLSVNDE------- 86 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHH-cCCCChHHHHHHHHHHHhcCCChh-------
Confidence 33444554 56899999998888775 23344555567788999997 799999999999999987753221
Q ss_pred HHHHhhccHHHHHHHHHhhcc--CChhHHHHHHHHHHhcCCCCh--hHHHHHHHHHHHHhccCChHHHHHHHHHHHhccC
Q 003201 215 REREALISKPVIYYLLNRIKE--FSEWAQCLVLELVAKYVPLDS--NEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTL 290 (840)
Q Consensus 215 ~~~~~li~~~~~~~Ll~~l~~--~~~W~Qi~iL~lL~~y~p~~~--~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~ 290 (840)
....+ +..+.++|..+.. .+.-.|..-|++|....-.+. ......+..+..+|.+.|..+-..+.|+++++..
T Consensus 87 --n~~~I-k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 87 --NQEQI-KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred --hHHHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 11112 3456677775433 466789999999998864432 2233445556678888888899999999999976
Q ss_pred CCchhHHHHHH-HHHHHHHHhhcCC-CchhHHHHHHHHHHHHhhCCCcccccccEEE-EccCCCHHHHHHHHHHHHhccC
Q 003201 291 SMTDVHQQVYE-RIKAPLLTLVSSG-SPEQSYAVLSHLHILVMRAPFIFASDYKHFY-CQYNEPSYVKKLKLEMLTAVAN 367 (840)
Q Consensus 291 ~~~~~~~~~l~-rl~~~L~~lLss~-~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~-c~~~dp~~IK~~kLdiL~~L~n 367 (840)
+ ++....++. +....++.|+.++ +.++-.-+|..+.-|... +.+.-..|- -.++.+. |+.+..
T Consensus 164 n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~----~~~~~~~~~~~~~~~~~---------L~~~~~ 229 (254)
T PF04826_consen 164 N-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN----IKKEAYVFVQDDFSEDS---------LFSLFG 229 (254)
T ss_pred C-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh----hCcccceeccccCCchh---------HHHHHc
Confidence 4 333222322 3344567777654 455555555544444321 111111110 1122211 222222
Q ss_pred CCCHHHHHHHHHHhhhcCCHHHHHHHH
Q 003201 368 ESNTYEIVTELCEYAANVDIPIARESI 394 (840)
Q Consensus 368 ~~Nv~~Iv~EL~~y~~~~d~~~~~~~i 394 (840)
+ .+.+.++|..-+...|++++.++|
T Consensus 230 e--~~~~~~~l~~l~~h~d~ev~~~v~ 254 (254)
T PF04826_consen 230 E--SSQLAKKLQALANHPDPEVKEQVI 254 (254)
T ss_pred c--HHHHHHHHHHHHcCCCHHHhhhcC
Confidence 2 345667777777778888877653
No 50
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.19 E-value=0.031 Score=63.98 Aligned_cols=285 Identities=17% Similarity=0.153 Sum_probs=168.5
Q ss_pred HHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCC----hhhhHHHHHHHHHhccCCCChHHHHHHHHHHH
Q 003201 85 LYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR----VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVL 160 (840)
Q Consensus 85 Lyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~----~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~ 160 (840)
=|...+.++|++......-.|.-=+.|.-+++.--|-|.||.+. .++..+..+..++..|+.++.-.|=.|.--+-
T Consensus 249 r~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln 328 (898)
T COG5240 249 RATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILN 328 (898)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 34445556777765544444444466777888888888888854 35677778888888899988888888888888
Q ss_pred HHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHH----hhccC
Q 003201 161 KLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLN----RIKEF 236 (840)
Q Consensus 161 kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~----~l~~~ 236 (840)
++-..+|+.+ .---..+.+| .+|.|-.+..-|+..|..-.. + ..+.+|.+ .+.+.
T Consensus 329 ~lam~~P~kv--~vcN~evEsL-Isd~Nr~IstyAITtLLKTGt---~---------------e~idrLv~~I~sfvhD~ 387 (898)
T COG5240 329 QLAMKYPQKV--SVCNKEVESL-ISDENRTISTYAITTLLKTGT---E---------------ETIDRLVNLIPSFVHDM 387 (898)
T ss_pred HHHhhCCcee--eecChhHHHH-hhcccccchHHHHHHHHHcCc---h---------------hhHHHHHHHHHHHHHhh
Confidence 8889999987 4445678887 699998887777776654221 0 12333333 34555
Q ss_pred ChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCC-hHH---HHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhc
Q 003201 237 SEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHAN-GAV---VLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVS 312 (840)
Q Consensus 237 ~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~n-~aV---vleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLs 312 (840)
+.-..+.+++.++.++-.=|.+...+++.+...|..-+ --. ..+|+.-++.. .|+.+ +|+-.-|..|+.
T Consensus 388 SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~---~p~sk----EraLe~LC~fIE 460 (898)
T COG5240 388 SDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEN---DPDSK----ERALEVLCTFIE 460 (898)
T ss_pred ccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhh---CchHH----HHHHHHHHHHHh
Confidence 55556666666666554444566677787776654432 222 23344334433 33333 345556788886
Q ss_pred CCCchhHHHHHHHHHHHHhhCCCcccc--cccEEEEc-cCCCHHHHHHHHHHHHhcc----CCCCHHHHHHHHHHhhhcC
Q 003201 313 SGSPEQSYAVLSHLHILVMRAPFIFAS--DYKHFYCQ-YNEPSYVKKLKLEMLTAVA----NESNTYEIVTELCEYAANV 385 (840)
Q Consensus 313 s~~~nirY~aL~~l~~l~~~~p~~~~~--~~~~f~c~-~~dp~~IK~~kLdiL~~L~----n~~Nv~~Iv~EL~~y~~~~ 385 (840)
+ -+-.-++++.+..|-..-|..=.+ +++++|-+ -=+...||.-++.-|.+.+ +.---+.|..-|..++.+.
T Consensus 461 D--cey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~ 538 (898)
T COG5240 461 D--CEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQ 538 (898)
T ss_pred h--cchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcc
Confidence 4 455567788888777766643221 12222211 0112346666666664432 2222333444445566666
Q ss_pred CHHHHHHHHHHHHH
Q 003201 386 DIPIARESIRAVGK 399 (840)
Q Consensus 386 d~~~~~~~i~aI~~ 399 (840)
|+++|..+..++..
T Consensus 539 DdeVRdrAsf~l~~ 552 (898)
T COG5240 539 DDEVRDRASFLLRN 552 (898)
T ss_pred cHHHHHHHHHHHHh
Confidence 66666555444433
No 51
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.17 E-value=0.76 Score=57.28 Aligned_cols=155 Identities=16% Similarity=0.175 Sum_probs=116.1
Q ss_pred HHHHhcCCCccchhhhhhhhccCC-----CcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhC
Q 003201 52 ISYMTIGIDVSAVFGEMVMCSATS-----DIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCS 126 (840)
Q Consensus 52 I~~m~lG~DvS~lF~~Vi~l~~S~-----d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~ 126 (840)
+.++..-|....++..+++-+.+. |-..+|.+=.+|..++..-|.+++--.+.|..=+.+.+..+|+.-+..+++
T Consensus 259 v~l~~sky~~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n 338 (1251)
T KOG0414|consen 259 VTLVRSKYGSVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICAN 338 (1251)
T ss_pred HHHHHHhcccHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 344444566677888888766654 445578888999999999999988888888886777899999988888888
Q ss_pred CChh------------hhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCccc-CCCchHHHHHHHhcCCChhHHH
Q 003201 127 LRVA------------NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI-DADFPPTLKHLMLNDPDPQVVA 193 (840)
Q Consensus 127 I~~~------------~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~-~~~~~~~L~~lLL~D~d~~Vv~ 193 (840)
+... ++-..+...+..-+.|-++|||-++.-.+.|+++....-.. ..++....... +.|++..|..
T Consensus 339 ~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~gr-l~DkSslVRk 417 (1251)
T KOG0414|consen 339 LVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGR-LEDKSSLVRK 417 (1251)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcc-cccccHHHHH
Confidence 6332 23334667778888999999999999999999987554330 12223333333 5799999999
Q ss_pred HHHHHHHHHHhhcc
Q 003201 194 NCLSALQEIWSLEA 207 (840)
Q Consensus 194 ~al~~L~eI~~~~~ 207 (840)
+|+.++.-+..++|
T Consensus 418 ~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 418 NAIQLLSSLLDRHP 431 (1251)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999887776
No 52
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.11 E-value=0.048 Score=60.60 Aligned_cols=186 Identities=21% Similarity=0.187 Sum_probs=119.6
Q ss_pred hhhhhhhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhc
Q 003201 64 VFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLG 143 (840)
Q Consensus 64 lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~ 143 (840)
....+++.+.+++...|.-+.-++..+.. .-++..+.+-|.|.++.+|..|...++.++.++-++.+...+.+
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~- 116 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGS------EEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLEN- 116 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhch------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc-
Confidence 35566788888888888887777555432 35788899999999999999999999999999888887766666
Q ss_pred cCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCCh------------hHHHHHHHHHHHHHhhccCcch
Q 003201 144 LKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDP------------QVVANCLSALQEIWSLEASTSE 211 (840)
Q Consensus 144 L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~------------~Vv~~al~~L~eI~~~~~~~~~ 211 (840)
|++.+||++|+.++.++..... +..+... ++|.+. .|..+++.++.++...
T Consensus 117 --d~~~~vR~~aa~aL~~~~~~~a--------~~~l~~~-l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~------ 179 (335)
T COG1413 117 --DENEGVRAAAARALGKLGDERA--------LDPLLEA-LQDEDSGSAAAALDAALLDVRAAAAEALGELGDP------ 179 (335)
T ss_pred --CCcHhHHHHHHHHHHhcCchhh--------hHHHHHH-hccchhhhhhhhccchHHHHHHHHHHHHHHcCCh------
Confidence 8999999999999998866422 3445555 467663 3444555554444211
Q ss_pred HHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhcc
Q 003201 212 EASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLT 289 (840)
Q Consensus 212 ~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~ 289 (840)
..+..+...+.+...-.+......|......+ ..+...+...++..+.-|...++..+..+.
T Consensus 180 ------------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 180 ------------EAIPLLIELLEDEDADVRRAAASALGQLGSEN----VEAADLLVKALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred ------------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence 11222233333333333333333333332211 234455666666777777777777666553
No 53
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.06 E-value=0.0017 Score=59.84 Aligned_cols=108 Identities=19% Similarity=0.119 Sum_probs=77.7
Q ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcc---cCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchH
Q 003201 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEE 212 (840)
Q Consensus 136 l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~---~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~ 212 (840)
+++.+.+.+.|.++++|+.|+.|+..+...+|+.. .+.+.++.+.++ ++|+|+.|+.+|+.+|..++...+.
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~-l~~~~~~v~~~a~~~L~~l~~~~~~---- 82 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQL-LKSEDEEVVKAALWALRNLAAGPED---- 82 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHH-HhCCCHHHHHHHHHHHHHHccCcHH----
Confidence 67778888899999999999999999997755433 345788899997 6899999999999999999865431
Q ss_pred HHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 003201 213 ASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY 251 (840)
Q Consensus 213 ~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y 251 (840)
... .......+..|+..+.+.+...+-..+.+|..+
T Consensus 83 -~~~--~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 83 -NKL--IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred -HHH--HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 111 112222455666666666666666666666543
No 54
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.97 E-value=0.15 Score=61.88 Aligned_cols=364 Identities=17% Similarity=0.253 Sum_probs=206.1
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCC--
Q 003201 177 PTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL-- 254 (840)
Q Consensus 177 ~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~-- 254 (840)
+++..+ ++.++. ++..|+.+|..++.. +... .....+.++..|++.|..-++=..+..+.+|.++.-.
T Consensus 253 kk~~~l-~~kQeq-Llrv~~~lLlNLAed-~~ve-------~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~E 322 (708)
T PF05804_consen 253 KKLQTL-IRKQEQ-LLRVAFYLLLNLAED-PRVE-------LKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKE 322 (708)
T ss_pred HHHHHH-HHHHHH-HHHHHHHHHHHHhcC-hHHH-------HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH
Confidence 455554 455554 566778888888753 2211 1223445666777777777777888888898887532
Q ss_pred ChhHH--HHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHH-HHHHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 003201 255 DSNEI--FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVM 331 (840)
Q Consensus 255 ~~~e~--~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~-rl~~~L~~lLss~~~nirY~aL~~l~~l~~ 331 (840)
+.++. ..+++.+..++++.+.-++-.|++++++++-. +++..++++ .+.+.|+.||. +++.+.+++..+..|..
T Consensus 323 NK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~--d~~~~~val~iLy~LS~ 399 (708)
T PF05804_consen 323 NKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLK--DPNFREVALKILYNLSM 399 (708)
T ss_pred HHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhC--CCchHHHHHHHHHHhcc
Confidence 22222 34678888999998888999999999999753 344433332 35678888997 46788889998888875
Q ss_pred hCC--Ccccc-c-ccEE-E-EccCCCHHHHHHHHHHHHhcc-CCCCHHHHHH-----HHHHhhhcCCHHHHHHHHHHHHH
Q 003201 332 RAP--FIFAS-D-YKHF-Y-CQYNEPSYVKKLKLEMLTAVA-NESNTYEIVT-----ELCEYAANVDIPIARESIRAVGK 399 (840)
Q Consensus 332 ~~p--~~~~~-~-~~~f-~-c~~~dp~~IK~~kLdiL~~L~-n~~Nv~~Iv~-----EL~~y~~~~d~~~~~~~i~aI~~ 399 (840)
... ..|.. + +..+ - ...+.+..+....+.+++.++ ++.|++.+++ .|.+.+...-..+--++|| .
T Consensus 400 dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIR---N 476 (708)
T PF05804_consen 400 DDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIR---N 476 (708)
T ss_pred CHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHH---H
Confidence 422 12321 1 1110 0 112233345666677777765 6678876654 2333332222222223444 4
Q ss_pred HHhhcCCh----HHHHHHHHHHhhhc-CchhhHHHHHHHHHHHhhCCCcch-----hHHHHHHhhhcccCCchHHHHHHH
Q 003201 400 IALQQYDV----NAIVDRLLQFLEME-KDYVTAEALVLVKDLLRKYPQWSH-----DCIAVVGSISSQNVQEPKAKAALI 469 (840)
Q Consensus 400 la~k~~~~----~~~v~~Ll~LL~~~-~~~v~~e~v~~i~~il~~~p~~~~-----~~~~~l~~l~~~~i~~~~ak~a~i 469 (840)
++..-+.. ..+|.-+++++..+ .+.+.-|++-.+.++-....++.. ..+..+.+++.....+++..--++
T Consensus 477 iS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~V 556 (708)
T PF05804_consen 477 ISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVV 556 (708)
T ss_pred HHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHH
Confidence 44433222 23455555665543 334555666566655432222221 123344444444444455544455
Q ss_pred HHHcCcCCCCCChH-----HHHHHHHHhh--ccCCcHHHHHHHHHHHhHHhhcCChhHHHH-------HHHHHHhhccCC
Q 003201 470 WMLGEYSQDMQDAP-----YILESLTENW--EEEPSAEVRLHLLTAVMKCFFKRPPETQKV-------LGAALAAGLADF 535 (840)
Q Consensus 470 wilGEy~~~i~~~~-----~il~~l~~~~--~~e~~~~vk~~lLta~~Kl~~~~p~e~~~~-------l~~vL~~~~~d~ 535 (840)
-++|--+..-.-++ .+++.+++-+ ..|+ .+.-+|++-++-++..+.+ +++. +.+++.. ..|.
T Consensus 557 i~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeD-dE~VlQil~~f~~ll~h~~--tr~~ll~~~~~~~ylidL-~~d~ 632 (708)
T PF05804_consen 557 ILLGTLASDPECAPLLAKSGLIPTLIELLNAKQED-DEIVLQILYVFYQLLFHEE--TREVLLKETEIPAYLIDL-MHDK 632 (708)
T ss_pred HHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCch-HHHHHHHHHHHHHHHcChH--HHHHHHhccchHHHHHHH-hcCC
Confidence 66675543211121 1233333322 2355 8899999999999876643 3332 2344443 4689
Q ss_pred ChHHHhHHHHHHHHcc-CCHHHHHhh
Q 003201 536 HQDVHDRALFYHRLLQ-YNVSVAERV 560 (840)
Q Consensus 536 d~dVrdRA~~Y~rLL~-~~~~~a~~v 560 (840)
|++||.=|-.-.-++. .+.+-+++|
T Consensus 633 N~~ir~~~d~~Ldii~e~d~~w~~ri 658 (708)
T PF05804_consen 633 NAEIRKVCDNALDIIAEYDEEWAERI 658 (708)
T ss_pred CHHHHHHHHHHHHHHHHhCHHHHHHh
Confidence 9999998877766543 566666654
No 55
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.97 E-value=0.19 Score=55.78 Aligned_cols=222 Identities=21% Similarity=0.156 Sum_probs=135.9
Q ss_pred HHHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHH
Q 003201 99 LLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPT 178 (840)
Q Consensus 99 lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~ 178 (840)
...+..+.+.+.++++.+|..|...++.+...+ .++.+.+.+.|.++.||..|+.++.++-. | .-.+.
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~----av~~l~~~l~d~~~~vr~~a~~aLg~~~~--~------~a~~~ 109 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGELGSEE----AVPLLRELLSDEDPRVRDAAADALGELGD--P------EAVPP 109 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhhchHH----HHHHHHHHhcCCCHHHHHHHHHHHHccCC--h------hHHHH
Confidence 357888999999999999999999999988775 45567889999999999999998876532 2 33456
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhH
Q 003201 179 LKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNE 258 (840)
Q Consensus 179 L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e 258 (840)
+..++.+|.|..|..+|..+|..+.... .+..|+..+.+...+.+...+ +..
T Consensus 110 li~~l~~d~~~~vR~~aa~aL~~~~~~~------------------a~~~l~~~l~~~~~~~a~~~~---------~~~- 161 (335)
T COG1413 110 LVELLENDENEGVRAAAARALGKLGDER------------------ALDPLLEALQDEDSGSAAAAL---------DAA- 161 (335)
T ss_pred HHHHHHcCCcHhHHHHHHHHHHhcCchh------------------hhHHHHHHhccchhhhhhhhc---------cch-
Confidence 6666444899999999999998875321 133344444443332211111 000
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCccc
Q 003201 259 IFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFA 338 (840)
Q Consensus 259 ~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~ 338 (840)
+ ..+..+++..+..+... +...++..++.+.+..+|..+...+..+....
T Consensus 162 -----------~----~~~r~~a~~~l~~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----- 211 (335)
T COG1413 162 -----------L----LDVRAAAAEALGELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN----- 211 (335)
T ss_pred -----------H----HHHHHHHHHHHHHcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----
Confidence 0 04555555555544321 13344555666666667777777777665443
Q ss_pred ccccEEE--EccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcCCHHHHHHHH
Q 003201 339 SDYKHFY--CQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESI 394 (840)
Q Consensus 339 ~~~~~f~--c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i 394 (840)
.+....| ...++...+|...+..|-.+-.+..+..+ ..++.+.+..++....
T Consensus 212 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~~~~~l----~~~l~~~~~~~~~~~~ 265 (335)
T COG1413 212 VEAADLLVKALSDESLEVRKAALLALGEIGDEEAVDAL----AKALEDEDVILALLAA 265 (335)
T ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcchhHHHH----HHHHhccchHHHHHHH
Confidence 1221111 22455567777777777666555444433 3444555544444333
No 56
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.91 E-value=0.031 Score=56.54 Aligned_cols=93 Identities=17% Similarity=0.189 Sum_probs=76.8
Q ss_pred ChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHH
Q 003201 148 NSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIY 227 (840)
Q Consensus 148 ~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~ 227 (840)
+|-||..|+.++.-+...+|..+ +.|.+.+..+ |+|+||.|..+|+.+|..+...+.- ....+++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v--e~~~~~l~~~-L~D~~~~VR~~al~~Ls~Li~~d~i-----------k~k~~l~~ 66 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV--EPYLPNLYKC-LRDEDPLVRKTALLVLSHLILEDMI-----------KVKGQLFS 66 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH--HhHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHcCce-----------eehhhhhH
Confidence 58899999999999999999998 7799999998 6999999999999999998764331 12223457
Q ss_pred HHHHhhccCChhHHHHHHHHHHhcCCC
Q 003201 228 YLLNRIKEFSEWAQCLVLELVAKYVPL 254 (840)
Q Consensus 228 ~Ll~~l~~~~~W~Qi~iL~lL~~y~p~ 254 (840)
+++..+.|.++..+-....++..+...
T Consensus 67 ~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 67 RILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 888888999999888888888776543
No 57
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.88 E-value=0.3 Score=56.66 Aligned_cols=311 Identities=15% Similarity=0.137 Sum_probs=162.9
Q ss_pred cCCCccchhhhhh-hhccCCCcchHHHHHHHHHHhccCCCchHH-----HHHHHH----HhhcCCCChh--hHhHHHHHh
Q 003201 57 IGIDVSAVFGEMV-MCSATSDIVLKKMCYLYVGNYAKVNPDLAL-----LTINFL----QRDCKDEDPM--IRGLALRSL 124 (840)
Q Consensus 57 lG~DvS~lF~~Vi-~l~~S~d~~~KkL~YLyl~~~~~~~~dl~l-----L~iNtl----~KDl~~~Np~--ir~LALr~l 124 (840)
.|+|... .++|+ ..+.|+|-+.||..-+....+.+...+-.- .+.-.| .+-....-+. ..-++--.+
T Consensus 435 a~h~tre-~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvil 513 (975)
T COG5181 435 ACHDTRE-HMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVIL 513 (975)
T ss_pred hhhhHHH-HHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHH
Confidence 4566544 34444 688999999999999999999876554211 011111 1111111111 111222223
Q ss_pred hCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHh---cCC--ChhHHHHHHHHH
Q 003201 125 CSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLML---NDP--DPQVVANCLSAL 199 (840)
Q Consensus 125 ~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL---~D~--d~~Vv~~al~~L 199 (840)
+.... .+++..-|..-++|+..--||-++-++-|++..-|..-.++...+++++-++ .++ ..+++.-|+.+.
T Consensus 514 Ak~~g---~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv 590 (975)
T COG5181 514 AKMGG---DPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTV 590 (975)
T ss_pred HHHcC---ChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccce
Confidence 32221 2355566677788988777999999999999877754433333333332211 122 222222222211
Q ss_pred ---HHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHHhc
Q 003201 200 ---QEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL-----DSNEIFDIMNLLEDRLQ 271 (840)
Q Consensus 200 ---~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~-----~~~e~~~il~~l~~~L~ 271 (840)
.++. | .-...+++..+|+.|+...|-..+.-.++...+.+- +.++..++=+.+-..|.
T Consensus 591 ~vsl~~r----------~----kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lg 656 (975)
T COG5181 591 LVSLEFR----------G----KPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLG 656 (975)
T ss_pred eeehhhc----------c----CcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcC
Confidence 1110 0 011235677778888888887777777776665431 22333333344444554
Q ss_pred cCChHHHHHHHHHHHhccCC------CchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCcccccccEEE
Q 003201 272 HANGAVVLSTIKVFLHLTLS------MTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFY 345 (840)
Q Consensus 272 ~~n~aVvleaik~il~l~~~------~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~ 345 (840)
..-+-|+=..+++++.+... .|.+ .+ +.+.|.-.|.++..-+.--++..+..|+.+.|+.
T Consensus 657 e~ypEvLgsil~Ai~~I~sv~~~~~mqpPi-~~----ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pey--------- 722 (975)
T COG5181 657 EDYPEVLGSILKAICSIYSVHRFRSMQPPI-SG----ILPSLTPILRNKHQKVVANTIALVGTICMNSPEY--------- 722 (975)
T ss_pred cccHHHHHHHHHHHHHHhhhhcccccCCch-hh----ccccccHhhhhhhHHHhhhHHHHHHHHHhcCccc---------
Confidence 45555544444444333221 1111 12 2222333455555555556666667777666641
Q ss_pred EccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhh
Q 003201 346 CQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEM 420 (840)
Q Consensus 346 c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~~~~v~~Ll~LL~~ 420 (840)
| ...-+-.|.=||.+-+.+-+.+++|.+....|-|+...- ...++++|++=|+.
T Consensus 723 --------i------------~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiG-PqdvL~~LlnnLkv 776 (975)
T COG5181 723 --------I------------GVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIG-PQDVLDILLNNLKV 776 (975)
T ss_pred --------C------------CHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcC-HHHHHHHHHhcchH
Confidence 1 111244555666777777778888888888888776642 12455666554443
No 58
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.84 E-value=0.0051 Score=64.43 Aligned_cols=181 Identities=18% Similarity=0.167 Sum_probs=105.3
Q ss_pred cHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcC--CCccchhhhhh--------hhccCCCcchHHHHHHHHHHh
Q 003201 21 EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIG--IDVSAVFGEMV--------MCSATSDIVLKKMCYLYVGNY 90 (840)
Q Consensus 21 Ei~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG--~DvS~lF~~Vi--------~l~~S~d~~~KkL~YLyl~~~ 90 (840)
|++++.+.|.+-.. ..+=++|.+++.++-.+...| .+-..-|.+.+ +.+.+.+-.+=+-+-..+..+
T Consensus 4 ~~~~~~~~l~~~~~---~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l 80 (228)
T PF12348_consen 4 EFEEILAALEKKES---ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDL 80 (228)
T ss_dssp --GGS-TTHHHHHT----SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHH
T ss_pred hHHHHHHHHhccCC---ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 55666666633111 134578899999999888877 22222232222 344444433334444444433
Q ss_pred ccC----CCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCChh-hhHHHH-HHHHHhccCCCChHHHHHHHHHHHHHHh
Q 003201 91 AKV----NPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVA-NLVEYL-VGPLGLGLKDNNSYVRTVAVIGVLKLYH 164 (840)
Q Consensus 91 ~~~----~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~-~i~e~l-~~~v~~~L~d~~pyVRK~Aala~~kl~~ 164 (840)
+.. -...+-..++.|.+=+.+++..+|..|-++|..|... .+...+ .+.+..++.|++|-||..++.++..+..
T Consensus 81 ~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~ 160 (228)
T PF12348_consen 81 ARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILE 160 (228)
T ss_dssp HHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHT
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 311 1223457889999999999999999887777665332 222334 7788889999999999999999999999
Q ss_pred hcC---CcccC----CCchHHHHHHHhcCCChhHHHHHHHHHHHHHhh
Q 003201 165 ISA---PTCID----ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (840)
Q Consensus 165 ~~p---~~~~~----~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~ 205 (840)
..| ..+.. +.+.+.+..+ +.|.|+.|..+|-.++..+.+.
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~l~~~-l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 161 KWGSDSSVLQKSAFLKQLVKALVKL-LSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp T-----GGG--HHHHHHHHHHHHHH-HTSS-HHHHHHHHHHHHHHHHH
T ss_pred HccchHhhhcccchHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHH
Confidence 888 33322 2355667776 6999999999999888887654
No 59
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.16 Score=60.52 Aligned_cols=120 Identities=18% Similarity=0.182 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcCC-----Cccchhhh-hhhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHH
Q 003201 47 LFKKVISYMTIGI-----DVSAVFGE-MVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLA 120 (840)
Q Consensus 47 ~lkKlI~~m~lG~-----DvS~lF~~-Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LA 120 (840)
-+||+.|++...| |.+-++.. +++=+..++..++-+.-=.++.. .-+.+.--.++-+++=++|.+|++|--|
T Consensus 64 elKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l--~v~~i~ey~~~Pl~~~l~d~~~yvRkta 141 (734)
T KOG1061|consen 64 ELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCL--RVDKITEYLCDPLLKCLKDDDPYVRKTA 141 (734)
T ss_pred hHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeE--eehHHHHHHHHHHHHhccCCChhHHHHH
Confidence 3667777666544 33323222 23344455544443332222221 1233334556666666677777776655
Q ss_pred HHHhhCCCh--hhh--HHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCC
Q 003201 121 LRSLCSLRV--ANL--VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP 168 (840)
Q Consensus 121 Lr~l~~I~~--~~i--~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~ 168 (840)
--+..++.. +++ ..-+.+.++.++.|.+|-|--.|+-++.-+...+|+
T Consensus 142 a~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 142 AVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred HHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 555554432 222 234455566666667777776666666666666663
No 60
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=1.8 Score=51.12 Aligned_cols=343 Identities=15% Similarity=0.049 Sum_probs=195.2
Q ss_pred cCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCCh-----hhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhc
Q 003201 92 KVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRV-----ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS 166 (840)
Q Consensus 92 ~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~-----~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~ 166 (840)
.+++.-..+..+-=.+-......-+|-.++.++..++. +..-+++...+.....|.++-||+.|+-|++.+..-.
T Consensus 150 ~~~~~~i~l~~~~a~~~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~ 229 (823)
T KOG2259|consen 150 CEEDIYILLLHGVAKVRSSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF 229 (823)
T ss_pred CchhhHHHHHhhhHHHhhhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc
Confidence 34555555666655555555566667777777777654 3456677777888889999999999999999887621
Q ss_pred CCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHH
Q 003201 167 APTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLE 246 (840)
Q Consensus 167 p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~ 246 (840)
.+ .........++ +.|.+..|..+|+.++.-.....|......- +...+.+ ..+.++|..+.+.+=-..+..-+
T Consensus 230 --kL-~~~~Y~~A~~~-lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~-~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK 303 (823)
T KOG2259|consen 230 --KL-SKACYSRAVKH-LSDDYEDVRKAAVQLVSVWGNRCPAPLERES-EEEKLKD-AAFSSVCRAVRDRSLSVRVEAAK 303 (823)
T ss_pred --cc-cHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHhcCCCcccchh-hhhhhHH-HHHHHHHHHHhcCceeeeehHHH
Confidence 11 12234566676 5999999999999998877766543221111 1112233 36888999887765445566666
Q ss_pred HHHhcCCCChhHHH-----HHHHHHHH-HhccCChHHHHHHHHH--HHhccCCCc--hhHH---HHH-HHHHHHHHHhhc
Q 003201 247 LVAKYVPLDSNEIF-----DIMNLLED-RLQHANGAVVLSTIKV--FLHLTLSMT--DVHQ---QVY-ERIKAPLLTLVS 312 (840)
Q Consensus 247 lL~~y~p~~~~e~~-----~il~~l~~-~L~~~n~aVvleaik~--il~l~~~~~--~~~~---~~l-~rl~~~L~~lLs 312 (840)
+|..+..-+++-.. +++..+.. +..|.-+.-.++.-.- ==.|..+-| +... .++ ..+.++++.=|.
T Consensus 304 ~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlE 383 (823)
T KOG2259|consen 304 ALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLE 383 (823)
T ss_pred HhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeech
Confidence 66665432222111 12221110 0111111111110000 000100000 0000 000 011223333344
Q ss_pred CCCchhHHHHHHHHHHHHhhCCCcccccccEEE--EccCCCHHHHHHHHHHHHhccCCCCH-HHHHHHHHHhhhcCCHHH
Q 003201 313 SGSPEQSYAVLSHLHILVMRAPFIFASDYKHFY--CQYNEPSYVKKLKLEMLTAVANESNT-YEIVTELCEYAANVDIPI 389 (840)
Q Consensus 313 s~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~--c~~~dp~~IK~~kLdiL~~L~n~~Nv-~~Iv~EL~~y~~~~d~~~ 389 (840)
+.--|+|-.|...+..|+...|+.-..-+. |. ..+|+..-+|.+++.-|..+++.--+ ++.++.+++-+.+..+++
T Consensus 384 DEf~EVR~AAV~Sl~~La~ssP~FA~~ald-fLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dv 462 (823)
T KOG2259|consen 384 DEFYEVRRAAVASLCSLATSSPGFAVRALD-FLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDV 462 (823)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHH
Confidence 555678888888888888888864332221 11 12556678999999999988765333 246666777777777777
Q ss_pred HHHHHHHHHHHHhhcCCh---HHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcc
Q 003201 390 ARESIRAVGKIALQQYDV---NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWS 444 (840)
Q Consensus 390 ~~~~i~aI~~la~k~~~~---~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~ 444 (840)
|..+-.-++. .++++. .-|++-|++-|..- ..=.++++..+.+|-+|+|.+-
T Consensus 463 Re~l~elL~~--~~~~d~~~i~m~v~~lL~~L~ky-PqDrd~i~~cm~~iGqnH~~lv 517 (823)
T KOG2259|consen 463 REALRELLKN--ARVSDLECIDMCVAHLLKNLGKY-PQDRDEILRCMGRIGQNHRRLV 517 (823)
T ss_pred HHHHHHHHHh--cCCCcHHHHHHHHHHHHHHhhhC-CCCcHHHHHHHHHHhccChhhH
Confidence 7655444322 366664 34566666555532 2235788888999988888763
No 61
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.53 Score=55.07 Aligned_cols=294 Identities=15% Similarity=0.094 Sum_probs=160.1
Q ss_pred cCCCccchhhhhhhhccCCCcchHHHHHHHHHHhc-cCCC---chHHHHHHHHHhhcCCCChhh----HhHHHHHh----
Q 003201 57 IGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYA-KVNP---DLALLTINFLQRDCKDEDPMI----RGLALRSL---- 124 (840)
Q Consensus 57 lG~DvS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~-~~~~---dl~lL~iNtl~KDl~~~Np~i----r~LALr~l---- 124 (840)
.|++.+.+-..+.+++.+.++..++ ||-+-.-+. +.+. +--...+.++.+-..|.++.. .++|..+.
T Consensus 128 ~~~~~~~~l~~l~~ll~~~~~~~~~-~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~L 206 (569)
T KOG1242|consen 128 KGLSGEYVLELLLELLTSTKIAERA-GAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNL 206 (569)
T ss_pred hccCHHHHHHHHHHHhccccHHHHh-hhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhc
Confidence 5677777777777888887776643 333322222 2111 111234455666666654433 33443333
Q ss_pred hCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhh-cCCcccCCCchH-HHHHHHhcC--CChhHHHHHHHHHH
Q 003201 125 CSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SAPTCIDADFPP-TLKHLMLND--PDPQVVANCLSALQ 200 (840)
Q Consensus 125 ~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~-~p~~~~~~~~~~-~L~~lLL~D--~d~~Vv~~al~~L~ 200 (840)
|.-..|-++ .+.+.|..+..|..++||..|..|+--+-+- ++..+ ..+++ .|..+ ..+ +..+.....+.++.
T Consensus 207 g~~~EPyiv-~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV--K~llpsll~~l-~~~kWrtK~aslellg~m~ 282 (569)
T KOG1242|consen 207 GPPFEPYIV-PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV--KLLLPSLLGSL-LEAKWRTKMASLELLGAMA 282 (569)
T ss_pred CCCCCchHH-hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh--hHhhhhhHHHH-HHHhhhhHHHHHHHHHHHH
Confidence 323334443 4567788888999999999998888766554 44444 33443 34443 455 44555555555555
Q ss_pred HHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCC-CChhHHHHHHHHHHHHhccCChHHHH
Q 003201 201 EIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVP-LDSNEIFDIMNLLEDRLQHANGAVVL 279 (840)
Q Consensus 201 eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p-~~~~e~~~il~~l~~~L~~~n~aVvl 279 (840)
+.... .....-+.++..+-..+.+..+=.+-.-...+.+|+. .+..+...+++.+.+.+.+.+. -+-
T Consensus 283 ~~ap~-----------qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~-~~~ 350 (569)
T KOG1242|consen 283 DCAPK-----------QLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSC-YTP 350 (569)
T ss_pred HhchH-----------HHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCccc-chH
Confidence 54321 1122224466777777778877777777777777653 2345577788888888877652 233
Q ss_pred HHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCcccccccEEEEccCCCHHHHHHHH
Q 003201 280 STIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKL 359 (840)
Q Consensus 280 eaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~c~~~dp~~IK~~kL 359 (840)
+|+..+..-+- -..+...-+..+++.|.+=+..++.+ +|+.+.
T Consensus 351 e~~~~L~~ttF-V~~V~~psLalmvpiL~R~l~eRst~------------------------------------~kr~t~ 393 (569)
T KOG1242|consen 351 ECLDSLGATTF-VAEVDAPSLALMVPILKRGLAERSTS------------------------------------IKRKTA 393 (569)
T ss_pred HHHHhhcceee-eeeecchhHHHHHHHHHHHHhhccch------------------------------------hhhhHH
Confidence 34433322110 00000011222344333333333333 333333
Q ss_pred HH---HHhcc-CCCCHHH----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhhc
Q 003201 360 EM---LTAVA-NESNTYE----IVTELCEYAANVDIPIARESIRAVGKIALQQ 404 (840)
Q Consensus 360 di---L~~L~-n~~Nv~~----Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~ 404 (840)
.| ++.++ |+..+.. ++..|.+-+.+.+++.|..+.+++|.+-++.
T Consensus 394 ~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~ 446 (569)
T KOG1242|consen 394 IIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERL 446 (569)
T ss_pred HHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 33 44444 4455554 4445555666678999999999998877764
No 62
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.73 E-value=3.2 Score=53.25 Aligned_cols=183 Identities=11% Similarity=0.159 Sum_probs=117.3
Q ss_pred hhhhhccCCCcchHHHHHHHHHHhccCCCchHH--HHHHHHHhhcCCCChhhHhHHHHHhhCC--ChhhhHHHHHHHHHh
Q 003201 67 EMVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL--LTINFLQRDCKDEDPMIRGLALRSLCSL--RVANLVEYLVGPLGL 142 (840)
Q Consensus 67 ~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~l--L~iNtl~KDl~~~Np~ir~LALr~l~~I--~~~~i~e~l~~~v~~ 142 (840)
.++..+..+.+.+|-=+-=.++.....+|.+.. .+=-++..-+.|..-.||-.||--+|.. ..++.+...+..|..
T Consensus 820 ~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~e 899 (1692)
T KOG1020|consen 820 LILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQIIE 899 (1692)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHh
Confidence 344455666666655555566666666666522 2333444556788899999999999974 579999999999999
Q ss_pred ccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhcc
Q 003201 143 GLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALIS 222 (840)
Q Consensus 143 ~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~ 222 (840)
.+.|+.--|||.|+-=+-.+|..+|+.....+...++..- .+|....|.==+.-.|.++|-..+.. ...-+.....+.
T Consensus 900 rIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrR-v~DEEg~I~kLv~etf~klWF~p~~~-~~d~~~~~~kI~ 977 (1692)
T KOG1020|consen 900 RILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRR-VNDEEGNIKKLVRETFLKLWFTPVPE-VNDQPAKARKIS 977 (1692)
T ss_pred hcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHH-hccchhHHHHHHHHHHHHHhccCCCc-ccccHHHHHhhH
Confidence 9999999999999999999999999975333333333333 35666657666667788887533221 000011111111
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHhcC
Q 003201 223 KPVIYYLLNRIKEFSEWAQCLVLELVAKYV 252 (840)
Q Consensus 223 ~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~ 252 (840)
..+...-.+..-.+.|.+-.+..+|..+.
T Consensus 978 -~~~~vv~~~~d~~~~~~eqLl~~ilk~~~ 1006 (1692)
T KOG1020|consen 978 -LEVDVVMSQVDLMNDWLEQLLDHILKFYL 1006 (1692)
T ss_pred -HHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 11222222344468888888888777664
No 63
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.66 E-value=0.0034 Score=57.85 Aligned_cols=102 Identities=21% Similarity=0.170 Sum_probs=79.2
Q ss_pred HHHHHHhhcCCCChhhHhHHHHHhhCCChh------hhHH-HHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCc---c
Q 003201 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVA------NLVE-YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---C 170 (840)
Q Consensus 101 ~iNtl~KDl~~~Np~ir~LALr~l~~I~~~------~i~e-~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~---~ 170 (840)
.++.+.+=+.++|+.+|--|+.+++++... .+.+ .+++.+.+++.|+++.||+.|+.++..+....|+. +
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 355566666777889999999888887642 3333 66778888899999999999999999998766432 2
Q ss_pred cCCCchHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 003201 171 IDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (840)
Q Consensus 171 ~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~ 203 (840)
.+.++++.+.++ +++.|..+...|+.+|..++
T Consensus 88 ~~~g~l~~l~~~-l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNL-LDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHH-HhcCCHHHHHHHHHHHHHhh
Confidence 346788899897 68889999999988887764
No 64
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.54 E-value=0.048 Score=58.35 Aligned_cols=148 Identities=22% Similarity=0.228 Sum_probs=99.0
Q ss_pred CCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccH-HHHHHHHHhhccCChhHHHHHHHHHHhc
Q 003201 173 ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISK-PVIYYLLNRIKEFSEWAQCLVLELVAKY 251 (840)
Q Consensus 173 ~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~-~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y 251 (840)
++-++.|..+|-..+||.+..-|+.++........ +.+ .+.. ..+.-+.+.+++++++.+.+.+..+...
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~------nq~---~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nl 81 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFPF------NQD---IIRDLGGISLIGSLLNDPNPSVREKALNALNNL 81 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChh------HHH---HHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhc
Confidence 44456676764346799999999999887653211 111 1111 1233455667889999999999999987
Q ss_pred CCCChh--HHHHHHHHHHH-Hhcc-CChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHH
Q 003201 252 VPLDSN--EIFDIMNLLED-RLQH-ANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLH 327 (840)
Q Consensus 252 ~p~~~~--e~~~il~~l~~-~L~~-~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~ 327 (840)
....+. ..+..++.+.. ...+ .|+.+..++.+++.+++... +.+ ..+.+..+.++.+|++++.++|+-+|+.+.
T Consensus 82 s~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~-~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 82 SVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYH-HMLANYIPDLLSLLSSGSEKTKVQVLKVLV 159 (254)
T ss_pred CCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chh-hhHHhhHHHHHHHHHcCChHHHHHHHHHHH
Confidence 654332 23344444433 3333 47889999999999997543 222 334556677889999999999999999887
Q ss_pred HHHh
Q 003201 328 ILVM 331 (840)
Q Consensus 328 ~l~~ 331 (840)
-|..
T Consensus 160 nLS~ 163 (254)
T PF04826_consen 160 NLSE 163 (254)
T ss_pred Hhcc
Confidence 7654
No 65
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.43 E-value=0.057 Score=56.49 Aligned_cols=180 Identities=16% Similarity=0.137 Sum_probs=113.6
Q ss_pred CCCChHHHHHHHHHHHHHHhhc-CCcccCCCchHHHH-------HHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHH
Q 003201 145 KDNNSYVRTVAVIGVLKLYHIS-APTCIDADFPPTLK-------HLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRE 216 (840)
Q Consensus 145 ~d~~pyVRK~Aala~~kl~~~~-p~~~~~~~~~~~L~-------~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~ 216 (840)
++.+.-.|..|+..+-++...+ +... .+.+.+.+. .. +.|....|+.+|+.++.++...-+.....
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~-~~~~~~~l~~~~~~i~~~-l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~---- 90 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDF-PPDFVECLRQLLDAIIKQ-LSDLRSKVSKTACQLLSDLARQLGSHFEP---- 90 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH--S-HH---HHHHHHHHHHHHHHHHGGGGHH----
T ss_pred CccCHHHHHHHHHHHHHHHHcCCcccc-HHHHHHHHHHhHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHhHhHHH----
Confidence 7788999999999999998877 2211 133444333 44 57888899999999999998654432111
Q ss_pred HHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHH-HHHHHHHhccCChHHHHHHHHHHHhccCCCc--
Q 003201 217 REALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDI-MNLLEDRLQHANGAVVLSTIKVFLHLTLSMT-- 293 (840)
Q Consensus 217 ~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~i-l~~l~~~L~~~n~aVvleaik~il~l~~~~~-- 293 (840)
....++..|+..+.+.+.+..-...+.|..+...-+ -..++ ...+....+|.|+.|-.+|+.++..+-...+
T Consensus 91 ----~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~ 165 (228)
T PF12348_consen 91 ----YADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSD 165 (228)
T ss_dssp ----HHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT----
T ss_pred ----HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccch
Confidence 112356778888888889988877777776654332 11234 6778888899999999888887766532222
Q ss_pred --hhH-HHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCC
Q 003201 294 --DVH-QQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF 335 (840)
Q Consensus 294 --~~~-~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~ 335 (840)
.+. ...++.+.+.+..++++.++++|..+-+.+..+.+..|+
T Consensus 166 ~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 166 SSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp -GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 222 223567888899999999999999999999999887774
No 66
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.42 E-value=2.7 Score=49.74 Aligned_cols=134 Identities=20% Similarity=0.208 Sum_probs=92.1
Q ss_pred hhhhhhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCC--hhhhHHHHHHHHHh
Q 003201 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR--VANLVEYLVGPLGL 142 (840)
Q Consensus 65 F~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~--~~~i~e~l~~~v~~ 142 (840)
|-.++..... +...|+|+=-++..|++.-|++.--++|++..=|.|.+..||--|+|.|..++ +++.+.-+...+.+
T Consensus 25 y~~il~~~kg-~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~Q 103 (556)
T PF05918_consen 25 YKEILDGVKG-SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQ 103 (556)
T ss_dssp HHHHHHGGGS--HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHH
T ss_pred HHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHH
Confidence 3344444443 68899999999999999999999999999999999999999999999999997 46899999999999
Q ss_pred ccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHH
Q 003201 143 GLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEI 202 (840)
Q Consensus 143 ~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI 202 (840)
+|...++-.+..+=-++..+++.+|.... .++...+..- ...|..|.-.++..|.+-
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll~~d~k~tL-~~lf~~i~~~--~~~de~~Re~~lkFl~~k 160 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLLKQDPKGTL-TGLFSQIESS--KSGDEQVRERALKFLREK 160 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHH-----HS-HHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHhcCcHHHH-HHHHHHHHhc--ccCchHHHHHHHHHHHHH
Confidence 99988887776666667777777775431 2222222210 134666777777766554
No 67
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.40 E-value=0.021 Score=66.43 Aligned_cols=190 Identities=16% Similarity=0.148 Sum_probs=120.9
Q ss_pred hhhhh-hhccC----CCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcC-CCChhhHhHHHHHhhCCCh--hhhHHHH
Q 003201 65 FGEMV-MCSAT----SDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCK-DEDPMIRGLALRSLCSLRV--ANLVEYL 136 (840)
Q Consensus 65 F~~Vi-~l~~S----~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~-~~Np~ir~LALr~l~~I~~--~~i~e~l 136 (840)
|-.++ ...++ +|-++-+-+||.+..+.--..+...=--..|..-+. +|||.||+.|.-.||.+-+ ..+++..
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~ 972 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEH 972 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHH
Confidence 55555 34443 677788888888765532222222111222223333 8999999999999998644 4667777
Q ss_pred HHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHH
Q 003201 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRE 216 (840)
Q Consensus 137 ~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~ 216 (840)
...+-+.|.|.+.-|||++.|.+.-+.-...=.+ .+...++..+ |.|+|..+---|=..+.++++++..++.
T Consensus 973 t~yLyrrL~De~~~V~rtclmti~fLilagq~KV--KGqlg~ma~~-L~deda~Isdmar~fft~~a~KdNt~yn----- 1044 (1128)
T COG5098 973 THYLYRRLGDEDADVRRTCLMTIHFLILAGQLKV--KGQLGKMALL-LTDEDAEISDMARHFFTQIAKKDNTMYN----- 1044 (1128)
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHccceee--ccchhhhHhh-ccCCcchHHHHHHHHHHHHHhcccchhh-----
Confidence 7778888999999999999999998776554344 6677788776 7999999988888889999887654321
Q ss_pred HHhhccHHHHHHHHHhhccCChhHH---HHHHHHHHhcCCCChhHHHHHHHHHHHHhc
Q 003201 217 REALISKPVIYYLLNRIKEFSEWAQ---CLVLELVAKYVPLDSNEIFDIMNLLEDRLQ 271 (840)
Q Consensus 217 ~~~li~~~~~~~Ll~~l~~~~~W~Q---i~iL~lL~~y~p~~~~e~~~il~~l~~~L~ 271 (840)
-+.-+...+..-++-+| -+|+++|..|.... +.-..+-+.+..++.
T Consensus 1045 --------~fidifs~ls~~ae~g~e~fk~II~FLt~fI~ke-rh~kql~E~L~~rl~ 1093 (1128)
T COG5098 1045 --------GFIDIFSTLSSDAENGQEPFKLIIGFLTDFISKE-RHQKQLKESLFLRLL 1093 (1128)
T ss_pred --------hhHHHHHHcCchhhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 01112222332223332 36788888776322 223334455544443
No 68
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.37 E-value=3.1 Score=48.76 Aligned_cols=442 Identities=17% Similarity=0.152 Sum_probs=217.7
Q ss_pred HHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHhhcCCccc--CCCchH
Q 003201 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHISAPTCI--DADFPP 177 (840)
Q Consensus 101 ~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~-~pyVRK~Aala~~kl~~~~p~~~~--~~~~~~ 177 (840)
.+.+++-|..+.+|++|--.=|+.+-+...-=++.+.+.+..+..+. +.--|.+.+-++.++..+..-.+. -..+.+
T Consensus 282 ~vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ 361 (975)
T COG5181 282 SVSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLK 361 (975)
T ss_pred eeeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHH
Confidence 46688999999999999777776665444434556677777777666 888999999999888876443221 145667
Q ss_pred HHHHHHhcCCChhH---HHHHHHHHHHHHhhccC-cc-hHHHHHHHhhccH---HHHHHHHHhhc--------cCChhHH
Q 003201 178 TLKHLMLNDPDPQV---VANCLSALQEIWSLEAS-TS-EEASREREALISK---PVIYYLLNRIK--------EFSEWAQ 241 (840)
Q Consensus 178 ~L~~lLL~D~d~~V---v~~al~~L~eI~~~~~~-~~-~~~~~~~~~li~~---~~~~~Ll~~l~--------~~~~W~Q 241 (840)
.+.++ +.|...-| -+++++.+.|..-.-+. .+ .-.|| .|.-+.. ..+..+|++.. ++.-.-.
T Consensus 362 ci~~~-l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~p-Lw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~t 439 (975)
T COG5181 362 CISKL-LKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCP-LWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDT 439 (975)
T ss_pred HHHHH-hhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHH-HHHHHHhcCCchHHHHHHHhccccccCChHhhhhhH
Confidence 78887 57766544 56777777665321110 00 00111 0100000 02333444321 1122223
Q ss_pred HHHHHHHHhcCCCChhHHH-------------------HHHHHHHHHh-------cc-----CChHHHHHHHHHH-----
Q 003201 242 CLVLELVAKYVPLDSNEIF-------------------DIMNLLEDRL-------QH-----ANGAVVLSTIKVF----- 285 (840)
Q Consensus 242 i~iL~lL~~y~p~~~~e~~-------------------~il~~l~~~L-------~~-----~n~aVvleaik~i----- 285 (840)
-..++++.+-..+..++.. .+-+.+.+-+ ++ ++--|++.++-+.
T Consensus 440 re~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~ 519 (975)
T COG5181 440 REHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGD 519 (975)
T ss_pred HHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCC
Confidence 3444444433222222222 2222222211 01 1222334333222
Q ss_pred -------HhccCCCch----hHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhC--------C---C-------c
Q 003201 286 -------LHLTLSMTD----VHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA--------P---F-------I 336 (840)
Q Consensus 286 -------l~l~~~~~~----~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~--------p---~-------~ 336 (840)
+......++ .......|+.+-|+++=-+..-+-||. +.+..-.|.. | . .
T Consensus 520 ~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~--d~il~Afqeq~~t~~~il~~f~tv~vsl~~r 597 (975)
T COG5181 520 PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLY--DSILNAFQEQDTTVGLILPCFSTVLVSLEFR 597 (975)
T ss_pred hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHH--HHHHHHHHhccccccEEEecccceeeehhhc
Confidence 111111111 111223344333332211112222321 2222111211 1 0 0
Q ss_pred cccccc-----EEEEccCCCHHHHHHHHHHHHhccC------CC-CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhh-
Q 003201 337 FASDYK-----HFYCQYNEPSYVKKLKLEMLTAVAN------ES-NTYEIVTELCEYAANVDIPIARESIRAVGKIALQ- 403 (840)
Q Consensus 337 ~~~~~~-----~f~c~~~dp~~IK~~kLdiL~~L~n------~~-Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k- 403 (840)
-++|+. +++.+.+.|.-+|.+++|+.-.|+- +. -....=.-|.+|+.+.+++.---++.||..|..-
T Consensus 598 ~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~ 677 (975)
T COG5181 598 GKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVH 677 (975)
T ss_pred cCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhh
Confidence 123332 2334578888899999998766531 11 0111112246788888888888788887666532
Q ss_pred -c----CChHHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCc------------------------chhHHH-----
Q 003201 404 -Q----YDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQW------------------------SHDCIA----- 449 (840)
Q Consensus 404 -~----~~~~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~------------------------~~~~~~----- 449 (840)
+ |....++..|+-+|.++...|....+..+-.|..+.|+. +..+.+
T Consensus 678 ~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~I 757 (975)
T COG5181 678 RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCI 757 (975)
T ss_pred cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence 2 333445555555555544434333333333333333321 111111
Q ss_pred --------HHHhhhcccC--CchHH---HHHHHHHHcCcCCCCCChHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcC
Q 003201 450 --------VVGSISSQNV--QEPKA---KAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKR 516 (840)
Q Consensus 450 --------~l~~l~~~~i--~~~~a---k~a~iwilGEy~~~i~~~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~ 516 (840)
+|.-++ +++ ++-.- -+.++-|.|||+-.. .++-.+...|..-. ..||.-+|.|.+-+|-.-
T Consensus 758 s~aiGPqdvL~~Ll-nnLkvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe-~nVQnGvLkam~fmFeyi 831 (975)
T COG5181 758 SRAIGPQDVLDILL-NNLKVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPE-ANVQNGVLKAMCFMFEYI 831 (975)
T ss_pred HhhcCHHHHHHHHH-hcchHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCch-hHHHHhHHHHHHHHHHHH
Confidence 111111 222 22111 235588999998643 45666777787766 889999999998877544
Q ss_pred ChhHHHH---HHHHHHhhccCCChHHHhHHHHHHHHccC
Q 003201 517 PPETQKV---LGAALAAGLADFHQDVHDRALFYHRLLQY 552 (840)
Q Consensus 517 p~e~~~~---l~~vL~~~~~d~d~dVrdRA~~Y~rLL~~ 552 (840)
.....+- +.-+|+-+..|.|+-=|+-|.-..+=|..
T Consensus 832 g~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~L 870 (975)
T COG5181 832 GQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVL 870 (975)
T ss_pred HHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhc
Confidence 3333332 23455566678888888877655554443
No 69
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.45 Score=55.86 Aligned_cols=318 Identities=14% Similarity=0.064 Sum_probs=168.7
Q ss_pred hHHHHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhH--HHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCccc-C-
Q 003201 97 LALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLV--EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI-D- 172 (840)
Q Consensus 97 l~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~--e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~-~- 172 (840)
++...++.+++.+.+.-=..--.-|...++-+.+... -.+...-+...++.+..+|-++....+-+- ..|+.+. +
T Consensus 118 I~~~~~~~lr~e~~~~vLa~~~~~l~~~g~~~~~~~~~i~l~~~~a~~~~~~~s~~~~~~~~~~~~~lg-~~~ss~~~d~ 196 (823)
T KOG2259|consen 118 ISDYASLELRAECSDHVLAQYLDNLLAIGCPVCEEDIYILLLHGVAKVRSSISSTGNRLLLYCFHLPLG-VSPSSLTHDR 196 (823)
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHhccCCCchhhHHHHHhhhHHHhhhcccccchHHHHHHhhhcc-cCCCcccccH
Confidence 3446778888777665333333344555554433322 222222222233444445544433333222 2333331 2
Q ss_pred CCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhc-
Q 003201 173 ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY- 251 (840)
Q Consensus 173 ~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y- 251 (840)
+.....|..+ .+|.|+.|..+|+-.|..+.. + ..+++-.+.+.++.+.+-.+=.....++++..|
T Consensus 197 ~~~~~~l~~~-~~~~D~~Vrt~A~eglL~L~e--g-----------~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~g 262 (823)
T KOG2259|consen 197 EHAARGLIYL-EHDQDFRVRTHAVEGLLALSE--G-----------FKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWG 262 (823)
T ss_pred HHHHHHHHHH-hcCCCcchHHHHHHHHHhhcc--c-----------ccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 2233436665 699999999999999887753 2 345666667777777777776666666666544
Q ss_pred --CCC--Ch-hHHHHHHH----HHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHHH-HHHHHHHh-hcCCCchhHH
Q 003201 252 --VPL--DS-NEIFDIMN----LLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYER-IKAPLLTL-VSSGSPEQSY 320 (840)
Q Consensus 252 --~p~--~~-~e~~~il~----~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~r-l~~~L~~l-Lss~~~nirY 320 (840)
.|. +. .+-.++.+ .+-..++..+-.|-.+|+|.+-.+..-..++..|.+.| +..-|.+- -..+.|-..|
T Consensus 263 n~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~ 342 (823)
T KOG2259|consen 263 NRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALY 342 (823)
T ss_pred hcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHH
Confidence 332 11 11222322 22334444556678899999887765444444444432 11101000 0000111000
Q ss_pred HHH--HHHHHHHhhCCC-cc-------ccc--ccEEEE-ccCCCHHHHHHHHHHHHhccC--CCCHHHHHHHHHHhhhcC
Q 003201 321 AVL--SHLHILVMRAPF-IF-------ASD--YKHFYC-QYNEPSYVKKLKLEMLTAVAN--ESNTYEIVTELCEYAANV 385 (840)
Q Consensus 321 ~aL--~~l~~l~~~~p~-~~-------~~~--~~~f~c-~~~dp~~IK~~kLdiL~~L~n--~~Nv~~Iv~EL~~y~~~~ 385 (840)
.-. ..=.+.....|. -. .++ --.|.- +.|+=..||+-+.+-++.|+. ++-...-++=|.+-..+.
T Consensus 343 s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE 422 (823)
T KOG2259|consen 343 SSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDE 422 (823)
T ss_pred hcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccH
Confidence 000 000000000010 00 000 011221 123335699999999999987 777888887777777777
Q ss_pred CHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCchhhHHH
Q 003201 386 DIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEA 429 (840)
Q Consensus 386 d~~~~~~~i~aI~~la~k~~~~~~~v~~Ll~LL~~~~~~v~~e~ 429 (840)
..++|-++|.++..|+....=-+.+++++++-|......|.++.
T Consensus 423 ~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l 466 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREAL 466 (823)
T ss_pred HHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHH
Confidence 78899999999999987754235688888888887655454443
No 70
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.12 E-value=1.2 Score=54.23 Aligned_cols=236 Identities=17% Similarity=0.165 Sum_probs=131.2
Q ss_pred hhhhhhhccCCCcchHHHHHHHHHHhc--cCCCchHH--HHHHHHHhhcCCCChhhHhHHHHHhhCCChh-hhHH-----
Q 003201 65 FGEMVMCSATSDIVLKKMCYLYVGNYA--KVNPDLAL--LTINFLQRDCKDEDPMIRGLALRSLCSLRVA-NLVE----- 134 (840)
Q Consensus 65 F~~Vi~l~~S~d~~~KkL~YLyl~~~~--~~~~dl~l--L~iNtl~KDl~~~Np~ir~LALr~l~~I~~~-~i~e----- 134 (840)
+.-.++++.+++.++.-++.-++..++ .+|.+.+. =++..|.|-+.++|+..+-.|||.|.++... ++-.
T Consensus 292 V~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~ 371 (708)
T PF05804_consen 292 VSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSL 371 (708)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHC
Confidence 444567888888888887778877775 23333211 3578899999999999999999999998542 2222
Q ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCC---cccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcch
Q 003201 135 YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSE 211 (840)
Q Consensus 135 ~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~---~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~ 211 (840)
-++|.+..+|.|++ .|-. +++++.-...+.+ .+...+-++.+.++|+.-+++.|-..+++++..++.. +....
T Consensus 372 GlIPkLv~LL~d~~--~~~v-al~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-~rnaq 447 (708)
T PF05804_consen 372 GLIPKLVELLKDPN--FREV-ALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN-KRNAQ 447 (708)
T ss_pred CCcHHHHHHhCCCc--hHHH-HHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC-HHHHH
Confidence 24577777887764 2322 3344322222221 2233556777777766666777766666666666542 21111
Q ss_pred HHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhcc-CChHHHHHHHHHHHhccC
Q 003201 212 EASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQH-ANGAVVLSTIKVFLHLTL 290 (840)
Q Consensus 212 ~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~-~n~aVvleaik~il~l~~ 290 (840)
..|.+ ..+..|+++......-.-.+++|-++...+.......+++..+...+.+ .+...+.||+-++-+++.
T Consensus 448 lm~~g-------~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~ 520 (708)
T PF05804_consen 448 LMCEG-------NGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTI 520 (708)
T ss_pred HHHhc-------CcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccc
Confidence 12211 1234444433222222333444444443322212122333333344444 467899999999988875
Q ss_pred CCchhHHHHHH--HHHHHHHHhhc
Q 003201 291 SMTDVHQQVYE--RIKAPLLTLVS 312 (840)
Q Consensus 291 ~~~~~~~~~l~--rl~~~L~~lLs 312 (840)
...+. .++++ .+.+-|..+|.
T Consensus 521 ~~ld~-~~ll~~~~llp~L~~~L~ 543 (708)
T PF05804_consen 521 PDLDW-AQLLQEYNLLPWLKDLLK 543 (708)
T ss_pred CCcCH-HHHHHhCCHHHHHHHHhC
Confidence 43332 22332 35555666664
No 71
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.08 E-value=1.1 Score=57.66 Aligned_cols=242 Identities=14% Similarity=0.162 Sum_probs=149.9
Q ss_pred HHHhhcCCCchhHHHHHHHHHHHHhhCCCcccccccEEE----EccC-CCHHHHHHHHHHHHhc--cCCCCHHHHHHHHH
Q 003201 307 LLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFY----CQYN-EPSYVKKLKLEMLTAV--ANESNTYEIVTELC 379 (840)
Q Consensus 307 L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~----c~~~-dp~~IK~~kLdiL~~L--~n~~Nv~~Iv~EL~ 379 (840)
|..|++.. ++..--|...-..++.+.+....+.+..|+ |.+. .-.+++..--++++.| +.+.-+-.|+.+|.
T Consensus 187 l~~lv~~~-~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~ 265 (1266)
T KOG1525|consen 187 LENLVKPG-RDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLE 265 (1266)
T ss_pred HHHhccCC-CCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455543 333333444444444444444444444443 2222 2345566666677765 45666667888888
Q ss_pred HhhhcCCHHHHHHHHHHHHHHHhhcCC--hHHHHHHHHHHhh---hcCchhhHHHHHHHHHHHhhCCCcchhHHHHHHhh
Q 003201 380 EYAANVDIPIARESIRAVGKIALQQYD--VNAIVDRLLQFLE---MEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSI 454 (840)
Q Consensus 380 ~y~~~~d~~~~~~~i~aI~~la~k~~~--~~~~v~~Ll~LL~---~~~~~v~~e~v~~i~~il~~~p~~~~~~~~~l~~l 454 (840)
.-+...+.++|.+++.-+|++-..... ...|-++...+|. .....|.-+++...++++.++|+..+.... +..+
T Consensus 266 ~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~-~~~l 344 (1266)
T KOG1525|consen 266 FELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTI-LLAL 344 (1266)
T ss_pred HHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHH-HHHH
Confidence 888888999999999999997654321 1223344444443 334568889999999999999987654321 2222
Q ss_pred hcccCCchHHHHHHHHHHcCcC--C-CCCChHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcC---------------
Q 003201 455 SSQNVQEPKAKAALIWMLGEYS--Q-DMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKR--------------- 516 (840)
Q Consensus 455 ~~~~i~~~~ak~a~iwilGEy~--~-~i~~~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~--------------- 516 (840)
.....|+..+....-+++.-. . .....+.+|....++..+-. ..||.+.+..++++|-+.
T Consensus 345 -~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk-~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~ 422 (1266)
T KOG1525|consen 345 -RERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKK-IKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPF 422 (1266)
T ss_pred -HhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHhhccCcccccccc
Confidence 122234444433333333321 1 11123338888888888888 999999999999999751
Q ss_pred ---Ch-----------hHHHHHHHHHHhhccCCChHHHhHHHHHHHHccC
Q 003201 517 ---PP-----------ETQKVLGAALAAGLADFHQDVHDRALFYHRLLQY 552 (840)
Q Consensus 517 ---p~-----------e~~~~l~~vL~~~~~d~d~dVrdRA~~Y~rLL~~ 552 (840)
|. +.+..+.++|..+.-..+.++|+|-.-.+.+|..
T Consensus 423 swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~ 472 (1266)
T KOG1525|consen 423 SWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAG 472 (1266)
T ss_pred cccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Confidence 11 2235667788888888899999999988888876
No 72
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.07 E-value=0.097 Score=64.78 Aligned_cols=229 Identities=14% Similarity=0.120 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHhcCCCc---------cchhhhhhhhccCCCcchHHHHHHHH-HHhccCCC---chH-HHHHHHHHh
Q 003201 42 DSKRELFKKVISYMTIGIDV---------SAVFGEMVMCSATSDIVLKKMCYLYV-GNYAKVNP---DLA-LLTINFLQR 107 (840)
Q Consensus 42 ~~kk~~lkKlI~~m~lG~Dv---------S~lF~~Vi~l~~S~d~~~KkL~YLyl-~~~~~~~~---dl~-lL~iNtl~K 107 (840)
+.|..++.-++.+..+=.|+ ..+||++-.+...++-+.=|++|--. ..+|+.-- ++. .+-.|++.+
T Consensus 477 ~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n 556 (1431)
T KOG1240|consen 477 DVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLN 556 (1431)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 45677777666666655544 23566666666555555556666321 11111100 000 011222333
Q ss_pred hcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCC
Q 003201 108 DCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDP 187 (840)
Q Consensus 108 Dl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~ 187 (840)
|..+. -+-....+-....+.+.+...+..+|.|+.|+||++-.-.+..++......-.+.-++..|... |+|+
T Consensus 557 ~~nse------t~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTf-LNDk 629 (1431)
T KOG1240|consen 557 DPNSE------TAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITF-LNDK 629 (1431)
T ss_pred Ccccc------cccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHH-hcCc
Confidence 33332 0011111122346677888889999999999999998888888888766554445567888887 7999
Q ss_pred ChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCC---ChhHHHHHHH
Q 003201 188 DPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL---DSNEIFDIMN 264 (840)
Q Consensus 188 d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~---~~~e~~~il~ 264 (840)
|....++-+-.+..++---+... ...-++.-|...+.|..|...++.|..|..++.. ......+|++
T Consensus 630 Dw~LR~aFfdsI~gvsi~VG~rs----------~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~ 699 (1431)
T KOG1240|consen 630 DWRLRGAFFDSIVGVSIFVGWRS----------VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQ 699 (1431)
T ss_pred cHHHHHHHHhhccceEEEEeeee----------HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 99987665444433321111000 0111234455678999999999999999877643 3345678899
Q ss_pred HHHHHhccCChHHHHHHHHHHHh
Q 003201 265 LLEDRLQHANGAVVLSTIKVFLH 287 (840)
Q Consensus 265 ~l~~~L~~~n~aVvleaik~il~ 287 (840)
.+.++|-|.|.=|..+++-.|..
T Consensus 700 ~v~PlL~hPN~WIR~~~~~iI~~ 722 (1431)
T KOG1240|consen 700 DVLPLLCHPNLWIRRAVLGIIAA 722 (1431)
T ss_pred hhhhheeCchHHHHHHHHHHHHH
Confidence 99999999986565555555443
No 73
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.02 E-value=0.042 Score=64.10 Aligned_cols=133 Identities=20% Similarity=0.235 Sum_probs=109.2
Q ss_pred CCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCC-----ChhhhHH-------HHHHHHH
Q 003201 74 TSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL-----RVANLVE-------YLVGPLG 141 (840)
Q Consensus 74 S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I-----~~~~i~e-------~l~~~v~ 141 (840)
-+|..--|-+-+++..+..-.|.+++---+.+.+=|.+..-..||.-+...+++ ..++|.+ .++.-+.
T Consensus 273 ~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ 352 (1128)
T COG5098 273 LPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLV 352 (1128)
T ss_pred cccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHH
Confidence 345555577788999999999999999999999999999999999999999997 3344544 6677777
Q ss_pred hccCCCChHHHHHHHHHHHHHHhhcCCccc-CCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Q 003201 142 LGLKDNNSYVRTVAVIGVLKLYHISAPTCI-DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (840)
Q Consensus 142 ~~L~d~~pyVRK~Aala~~kl~~~~p~~~~-~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~ 207 (840)
.-+.|.+||+|-||+-.+.|+|..+..... +.++...+.+. +.|+...|..||+.++..+.-+.|
T Consensus 353 ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~-lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 353 ERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRR-LQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred HHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHhcCC
Confidence 888999999999999999999998665542 35577777777 689999999999999998875544
No 74
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.91 E-value=2 Score=52.32 Aligned_cols=172 Identities=10% Similarity=0.158 Sum_probs=115.1
Q ss_pred HHHHHhh-cCCCChhhHhHHHHHhhC-CC-hhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHH
Q 003201 102 INFLQRD-CKDEDPMIRGLALRSLCS-LR-VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPT 178 (840)
Q Consensus 102 iNtl~KD-l~~~Np~ir~LALr~l~~-I~-~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~ 178 (840)
+-+++.. +.+.|...|--|++.+=. +. ..+ ...++++|.|.....+.-+||---+=+...-+.+|+... -.++.
T Consensus 20 ~~~~~sg~l~s~n~~~kidAmK~iIa~M~~G~d-mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l--LavNt 96 (757)
T COG5096 20 VAALSSGRLESSNDYKKIDAMKKIIAQMSLGED-MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL--LAVNT 96 (757)
T ss_pred HhhhccccccccChHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH--HHHHH
Confidence 3445555 899999999888876543 22 233 566777777777788999999777777777777776541 12344
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhH
Q 003201 179 LKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNE 258 (840)
Q Consensus 179 L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e 258 (840)
+.+= +.|+|+.+.+.|+..+.-+...+ +...++.-+.+.+.+.++...-...-.+..+..-+++.
T Consensus 97 i~kD-l~d~N~~iR~~AlR~ls~l~~~e--------------l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l 161 (757)
T COG5096 97 IQKD-LQDPNEEIRGFALRTLSLLRVKE--------------LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL 161 (757)
T ss_pred HHhh-ccCCCHHHHHHHHHHHHhcChHH--------------HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh
Confidence 4333 47899999999999998874211 22234445555677888877666666555554445443
Q ss_pred HHH--HHHHHHHHhccCChHHHHHHHHHHHhccCC
Q 003201 259 IFD--IMNLLEDRLQHANGAVVLSTIKVFLHLTLS 291 (840)
Q Consensus 259 ~~~--il~~l~~~L~~~n~aVvleaik~il~l~~~ 291 (840)
..+ .+..+..++..+++-|+-+|...+..+.+.
T Consensus 162 ~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 162 YHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred hhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 332 355566677788899999888888777654
No 75
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform
Probab=95.83 E-value=0.13 Score=47.07 Aligned_cols=100 Identities=18% Similarity=0.232 Sum_probs=73.4
Q ss_pred CCCChHHHHHHhhccCcccceeeeeCccCccCCCCHHHHHHHh-hhcCEEEEeecCCCCceEEEEeeeccCCCceEEEEE
Q 003201 725 AILDPGTFQQKWRQLPISLSQEFSLSPEGVAALTTPQALLWHM-QGHSIHCIASGGHSPNFKFFFFAQKAEESSNFLVEC 803 (840)
Q Consensus 725 ~~l~~~~Fq~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~~I~tiAsg~~~~~~k~y~yaq~~~~~~~fL~El 803 (840)
..|+-++|.++|.+.+....+.+.-.. ..+.+++.+.| +.-|+++|-.= |.+..+-++-..++...|+=+
T Consensus 3 l~isTeeFG~~W~s~~~e~k~~l~~~~-----~~t~~~~l~~l~~~l~lh~VevI----g~E~I~A~~ll~~~~~~L~H~ 73 (104)
T PF14807_consen 3 LQISTEEFGQLWLSFSNERKQNLPSSS-----QRTLPEFLQRLQQKLRLHVVEVI----GNEGIFACQLLNSSPVCLLHC 73 (104)
T ss_pred ccccHHHHHHHHHcCCCeEEEeccccC-----cCCHHHHHHHHHHhcCceEEEEe----CccceeeeeccCCCCeEEEEE
Confidence 468899999999999877655553111 23444555445 46999999832 237888888877777799999
Q ss_pred EEecCCCceEEEEecCChhhHHHHHHHHHHHH
Q 003201 804 IINTSSAKAQVKIKADDQSTSQAFSDVFQSAL 835 (840)
Q Consensus 804 ~i~~~~~~~~~tvKs~~~~~~~~f~~~~~~~l 835 (840)
.++.+ .+.++||+.++..........+++|
T Consensus 74 ~~~~~--~l~l~vrs~~~~l~d~ll~~~~~~~ 103 (104)
T PF14807_consen 74 RVNAG--TLDLWVRSSDSPLTDCLLYQCQKIL 103 (104)
T ss_pred EecCC--eEEEEEEcCCCCcHHHHHHHHHHHh
Confidence 98755 9999999999887777777666665
No 76
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.76 E-value=0.038 Score=48.36 Aligned_cols=82 Identities=26% Similarity=0.289 Sum_probs=60.5
Q ss_pred hhhhc-cCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCC
Q 003201 68 MVMCS-ATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKD 146 (840)
Q Consensus 68 Vi~l~-~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d 146 (840)
+++.+ .+++...|.-+.-++..+. ++ -+++.|.+=++|+|+.+|-.|+++|+.++.++..+. +.+.+.|
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~~--~~----~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~~~~~~----L~~~l~~ 73 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGELG--DP----EAIPALIELLKDEDPMVRRAAARALGRIGDPEAIPA----LIKLLQD 73 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCCT--HH----HHHHHHHHHHTSSSHHHHHHHHHHHHCCHHHHTHHH----HHHHHTC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHcC--CH----hHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHH----HHHHHcC
Confidence 45555 6778888887777777552 22 346667777789999999999999999998765554 5555554
Q ss_pred -CChHHHHHHHHHH
Q 003201 147 -NNSYVRTVAVIGV 159 (840)
Q Consensus 147 -~~pyVRK~Aala~ 159 (840)
++..||..|+-++
T Consensus 74 ~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 74 DDDEVVREAAAEAL 87 (88)
T ss_dssp -SSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhc
Confidence 5678899998776
No 77
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.70 E-value=0.027 Score=45.05 Aligned_cols=49 Identities=27% Similarity=0.245 Sum_probs=40.7
Q ss_pred hhhHhHHHHHhhCCCh------hhhHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Q 003201 114 PMIRGLALRSLCSLRV------ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKL 162 (840)
Q Consensus 114 p~ir~LALr~l~~I~~------~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl 162 (840)
|.+|..|+.+||++.. ....+.+++.+..+|.|+++.||.+|+.|+.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5789999999998742 346778888999999999999999999998654
No 78
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.66 E-value=0.014 Score=41.13 Aligned_cols=30 Identities=23% Similarity=0.049 Sum_probs=25.5
Q ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHhh
Q 003201 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLYHI 165 (840)
Q Consensus 136 l~~~v~~~L~d~~pyVRK~Aala~~kl~~~ 165 (840)
++|.+.++++|++|.||+.|+.|+.++.+.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 467889999999999999999999988763
No 79
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.62 E-value=0.016 Score=52.52 Aligned_cols=66 Identities=18% Similarity=0.286 Sum_probs=54.6
Q ss_pred hhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccC--CCchHHHHHHHhcCCChhHHHHH
Q 003201 129 VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCID--ADFPPTLKHLMLNDPDPQVVANC 195 (840)
Q Consensus 129 ~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~--~~~~~~L~~lLL~D~d~~Vv~~a 195 (840)
..+..+.++++|.+++.|+++-||-.|+-|++.+.+..++.+.. .+..+.|.++ ..|+|+.|..+|
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl-~~D~d~~Vr~~a 88 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKL-SADPDENVRSAA 88 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCchhHHHHH
Confidence 56788999999999999999999999999999999987766531 2344556665 689999998877
No 80
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=95.61 E-value=1.5 Score=50.30 Aligned_cols=331 Identities=13% Similarity=0.139 Sum_probs=174.0
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcC--
Q 003201 175 FPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV-- 252 (840)
Q Consensus 175 ~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~-- 252 (840)
+...+..+|-..++..++-..+.++.++...+|+.... -.+. ...++..+..+++.+..-+.+.+.+...+|+.+.
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~-f~~~-~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKL-FHDD-ALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHH-HHHH-hhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence 44455555444677788888888888888766531100 0000 0011223445555555566777877777777664
Q ss_pred -CCCh--hHHHHHHHHHHHHhccC-ChHHHHHHHHHHHhccCCCchhHHHHH-HHHHHHHHHhhcCC--CchhHHHHHHH
Q 003201 253 -PLDS--NEIFDIMNLLEDRLQHA-NGAVVLSTIKVFLHLTLSMTDVHQQVY-ERIKAPLLTLVSSG--SPEQSYAVLSH 325 (840)
Q Consensus 253 -p~~~--~e~~~il~~l~~~L~~~-n~aVvleaik~il~l~~~~~~~~~~~l-~rl~~~L~~lLss~--~~nirY~aL~~ 325 (840)
+... .+...+.+.+...|++. ++..+.-|++++-.+-.. +....... .+..++|..+|+.. +..++|-++-.
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 3221 22233556667777653 344555555665444322 11211111 22445677777642 45788988887
Q ss_pred HHHHHhhCCCccc--ccccEE--E---EccCCCHHHHHHHHHHHHhccCCC--------CHHHHHH-HHHHhh------h
Q 003201 326 LHILVMRAPFIFA--SDYKHF--Y---CQYNEPSYVKKLKLEMLTAVANES--------NTYEIVT-ELCEYA------A 383 (840)
Q Consensus 326 l~~l~~~~p~~~~--~~~~~f--~---c~~~dp~~IK~~kLdiL~~L~n~~--------Nv~~Iv~-EL~~y~------~ 383 (840)
+=.+.-..+ ... .+...+ + ++...-.-|=|..+-+|..+.+.. ....++. .+...+ .
T Consensus 211 lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk 289 (429)
T cd00256 211 IWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK 289 (429)
T ss_pred HHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC
Confidence 776653322 111 111110 0 112222345566777777777743 1122232 222222 2
Q ss_pred cCCHHHHHHHHHHHHHHHhhcC---ChHHHHH-HHHHHhhhcCchhhHHHHH-HHHHHHhhCCCcchhHHHHHHhhhccc
Q 003201 384 NVDIPIARESIRAVGKIALQQY---DVNAIVD-RLLQFLEMEKDYVTAEALV-LVKDLLRKYPQWSHDCIAVVGSISSQN 458 (840)
Q Consensus 384 ~~d~~~~~~~i~aI~~la~k~~---~~~~~v~-~Ll~LL~~~~~~v~~e~v~-~i~~il~~~p~~~~~~~~~l~~l~~~~ 458 (840)
-.|+|+..++-.--..+.+++- +...|.. .....|+=+..|-.+.-|. -...+-.+ + . ..+..|.+++ +.
T Consensus 290 ~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~--~-~-~llk~L~~iL-~~ 364 (429)
T cd00256 290 YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEK--N-Y-ELLKILIHLL-ET 364 (429)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhc--c-h-HHHHHHHHHH-hc
Confidence 2677777665554444544432 2333432 2222333333344444443 12222211 1 1 2344556655 33
Q ss_pred CCchHHHHHHHHHHcCcCCCCCChHHHHHHH------HHhhccCCcHHHHHHHHHHHhHHhhc
Q 003201 459 VQEPKAKAALIWMLGEYSQDMQDAPYILESL------TENWEEEPSAEVRLHLLTAVMKCFFK 515 (840)
Q Consensus 459 i~~~~ak~a~iwilGEy~~~i~~~~~il~~l------~~~~~~e~~~~vk~~lLta~~Kl~~~ 515 (840)
-.+|...+.++.=||||..+.|....+++.+ .+-...++ ++||-+.|.|+-|+...
T Consensus 365 s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d-~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 365 SVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHED-PNVRYEALLAVQKLMVH 426 (429)
T ss_pred CCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCC-HHHHHHHHHHHHHHHHh
Confidence 4688888999999999999988877776532 23333455 99999999999998653
No 81
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=1.5 Score=52.95 Aligned_cols=179 Identities=20% Similarity=0.167 Sum_probs=118.7
Q ss_pred HHHHHHhhcCCC-ChhhHhHHHHHhhCC---Chhh-----hHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHhhcCCcc
Q 003201 101 TINFLQRDCKDE-DPMIRGLALRSLCSL---RVAN-----LVEYLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHISAPTC 170 (840)
Q Consensus 101 ~iNtl~KDl~~~-Np~ir~LALr~l~~I---~~~~-----i~e~l~~~v~~~L~d~-~pyVRK~Aala~~kl~~~~p~~~ 170 (840)
=++.|..-|+.. +|...--||.-||.+ ++++ .++.++|.+..+|+|. ++-+---|+-|+..|+...|..+
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 345666667665 888888888888863 3433 4788999999999997 68999999999999999999865
Q ss_pred ---cCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHH
Q 003201 171 ---IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLEL 247 (840)
Q Consensus 171 ---~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~l 247 (840)
.+.+.++.|..-|+.=+=.-|.=.++.+|..|.+..|.. |.. ...+.--+.-+.=++--.|-+.|-.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~A----iL~------AG~l~a~LsylDFFSi~aQR~Alai 317 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKA----ILQ------AGALSAVLSYLDFFSIHAQRVALAI 317 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHH----HHh------cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666555444444557778899999998876641 211 0011111111222344467777777
Q ss_pred HHhcCC----CChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhcc
Q 003201 248 VAKYVP----LDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLT 289 (840)
Q Consensus 248 L~~y~p----~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~ 289 (840)
....|. .+..-.-+-+..|.++|++...-++-.+.-|+..+.
T Consensus 318 aaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 318 AANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred HHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 776653 333444556678899999887766666666665553
No 82
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.26 E-value=6.2 Score=46.47 Aligned_cols=384 Identities=12% Similarity=0.068 Sum_probs=197.9
Q ss_pred CCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHH
Q 003201 145 KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKP 224 (840)
Q Consensus 145 ~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~ 224 (840)
.|+++-||++-+-+....+..+.+.-. .++.+..+..|-.+.+..+.-| +..++.-...... +.+....+
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v-~~l~~~~~~~l~~~~~~~~~~~-~~v~~~~~a~~~~--------~~d~~~~~ 96 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNV-LNLKPCFEQRLNSLHNDNLRNN-VVVLEGTLAFHLQ--------IVDPRPIS 96 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHH-HHHHHHHHHHhccchhHHHhhh-hHHHHHHHHHhcc--------ccCcchhH
Confidence 789999999988888887766544321 3455555555323344333333 3333333222211 01122234
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCc--hhHHHHHH
Q 003201 225 VIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSN-EIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT--DVHQQVYE 301 (840)
Q Consensus 225 ~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~-e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~--~~~~~~l~ 301 (840)
++.+|++.+..+++..|-....++..+.+.... ....+.+.+..++.....+-...++.-+-.+-.... .... .
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~---~ 173 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE---F 173 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh---h
Confidence 788999999999999999999999887654332 334455666666665555544444444433322211 1111 1
Q ss_pred HHHHHHHHhhcCCCchh-HHHHHHHHHHHHhhCCCccccccc-----EEEEccCCCHHHHHHHHHHHHhcc---CCCCHH
Q 003201 302 RIKAPLLTLVSSGSPEQ-SYAVLSHLHILVMRAPFIFASDYK-----HFYCQYNEPSYVKKLKLEMLTAVA---NESNTY 372 (840)
Q Consensus 302 rl~~~L~~lLss~~~ni-rY~aL~~l~~l~~~~p~~~~~~~~-----~f~c~~~dp~~IK~~kLdiL~~L~---n~~Nv~ 372 (840)
.+...|...+.++.+-. |-.++-+.......-...|.+++. .|-|.+|...++|..+.+-..++. +..-++
T Consensus 174 ~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK 253 (569)
T KOG1242|consen 174 GFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK 253 (569)
T ss_pred hHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh
Confidence 12233444554432221 113333333333333345666543 234667777899998888777665 444566
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCh-H----HHHHHHHHHhhhcCchhhHHHHHHHHHHHh--hCCCcch
Q 003201 373 EIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-N----AIVDRLLQFLEMEKDYVTAEALVLVKDLLR--KYPQWSH 445 (840)
Q Consensus 373 ~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~-~----~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~--~~p~~~~ 445 (840)
.++.-++.-+.+..=.-+..++.-+|.++.--|.. + ..|..+.+.|......|.......+.++.+ .+|+++.
T Consensus 254 ~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~ 333 (569)
T KOG1242|consen 254 LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQK 333 (569)
T ss_pred HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 66666554333321112234555555544433321 2 244555555555555555555554444422 3455443
Q ss_pred hHHHHHHhhhcccCCchHHH-HHHHHHH--cCcCCCCCC-hHHHHHHHHHhhccCCcHHHHHH---HHHHHhHHhhcCCh
Q 003201 446 DCIAVVGSISSQNVQEPKAK-AALIWML--GEYSQDMQD-APYILESLTENWEEEPSAEVRLH---LLTAVMKCFFKRPP 518 (840)
Q Consensus 446 ~~~~~l~~l~~~~i~~~~ak-~a~iwil--GEy~~~i~~-~~~il~~l~~~~~~e~~~~vk~~---lLta~~Kl~~~~p~ 518 (840)
++..++ +.+.+|..+ ..++-.+ ++|.+.++. +-.++-.++.+=..|.|..++-. +.--.+|++ ..|.
T Consensus 334 ----~ip~Ll-d~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv-eDp~ 407 (569)
T KOG1242|consen 334 ----IIPTLL-DALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV-EDPK 407 (569)
T ss_pred ----HHHHHH-HHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh-cCHH
Confidence 333332 444555422 2233333 345565544 22444444433222222444433 333444443 2455
Q ss_pred hHHHHHHHHHHhh---ccCCChHHHhHHHHHH
Q 003201 519 ETQKVLGAALAAG---LADFHQDVHDRALFYH 547 (840)
Q Consensus 519 e~~~~l~~vL~~~---~~d~d~dVrdRA~~Y~ 547 (840)
+..+.+..++... ..+..||+|.=|..-+
T Consensus 408 ~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL 439 (569)
T KOG1242|consen 408 DLAPFLPSLLPGLKENLDDAVPEVRAVAARAL 439 (569)
T ss_pred HHhhhHHHHhhHHHHHhcCCChhHHHHHHHHH
Confidence 5666777776643 3456899998766544
No 83
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.25 E-value=9.8 Score=45.92 Aligned_cols=448 Identities=15% Similarity=0.179 Sum_probs=231.8
Q ss_pred HHHHHHHHHHHHHHhcCCCc-----c-chhhhhhhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChh
Q 003201 42 DSKRELFKKVISYMTIGIDV-----S-AVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPM 115 (840)
Q Consensus 42 ~~kk~~lkKlI~~m~lG~Dv-----S-~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ 115 (840)
+-+..++.-+..+|++-|+. - -+|.--+..|.|++-+.+-.+-=||++..++.-|+++=.--...+++. |.
T Consensus 232 ~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~---p~ 308 (859)
T KOG1241|consen 232 EIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP---PS 308 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---ch
Confidence 44566666666666666542 1 145555667778788888888888887777777766655555555555 22
Q ss_pred hHhHHHHHhhCCChhhhHHHHHHHHHhccCC-------CChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCC
Q 003201 116 IRGLALRSLCSLRVANLVEYLVGPLGLGLKD-------NNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPD 188 (840)
Q Consensus 116 ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d-------~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d 188 (840)
-...|..+ ++.+.|.+.++|.. .+..+-|.|-.|+.-+-+...+.+. +...+-++.- +..+|
T Consensus 309 ~~~fa~~a---------~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv-~~Vl~Fiee~-i~~pd 377 (859)
T KOG1241|consen 309 SKYFARQA---------LQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIV-PHVLPFIEEN-IQNPD 377 (859)
T ss_pred hhHHHHHH---------HhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccch-hhhHHHHHHh-cCCcc
Confidence 22223222 23455555555532 2356777777666554455454442 3444555544 35555
Q ss_pred hhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhh-------ccCChhHHHHHHHHHHhcCCCChhHHHH
Q 003201 189 PQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI-------KEFSEWAQCLVLELVAKYVPLDSNEIFD 261 (840)
Q Consensus 189 ~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l-------~~~~~W~Qi~iL~lL~~y~p~~~~e~~~ 261 (840)
=.=.-+|+.++-.|.. .|. ++...-+..+.+..+++.+ .+..+|.--+|.+.+..-+- +......
T Consensus 378 wr~reaavmAFGSIl~-gp~------~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~-n~~~l~~ 449 (859)
T KOG1241|consen 378 WRNREAAVMAFGSILE-GPE------PDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAII-NQELLQS 449 (859)
T ss_pred hhhhhHHHHHHHhhhc-CCc------hhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcc-cHhhhhH
Confidence 5555556666655542 221 1211111122233333332 35688999999988873221 2122222
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhcc-------CCC--chhHHHHHHHHHHHHHHhh---cCCCchhHHHHHHHHHHH
Q 003201 262 IMNLLEDRLQHANGAVVLSTIKVFLHLT-------LSM--TDVHQQVYERIKAPLLTLV---SSGSPEQSYAVLSHLHIL 329 (840)
Q Consensus 262 il~~l~~~L~~~n~aVvleaik~il~l~-------~~~--~~~~~~~l~rl~~~L~~lL---ss~~~nirY~aL~~l~~l 329 (840)
++..+..-|+ ..+-|.-.+.+.|+.+. .+. .+.....++-+++.|+.-- ..++.|+|-.+.++|..|
T Consensus 450 ~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmEl 528 (859)
T KOG1241|consen 450 KLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMEL 528 (859)
T ss_pred HHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Confidence 3333333332 23455555666665543 111 1111123444555554433 236789999999999999
Q ss_pred HhhCCCcccccccEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHH-HHHHhhhcCC-HHHHHHHHHHHHHHHhhcC-C
Q 003201 330 VMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVT-ELCEYAANVD-IPIARESIRAVGKIALQQY-D 406 (840)
Q Consensus 330 ~~~~p~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~-EL~~y~~~~d-~~~~~~~i~aI~~la~k~~-~ 406 (840)
+...|+-.. ..+....+-++.+| .+.+. +.+.|..... .++..-+...++.+-.|.+ +
T Consensus 529 Ik~st~~vy-------------~~v~~~~l~il~kl------~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~ 589 (859)
T KOG1241|consen 529 IKNSTDDVY-------------PMVQKLTLVILEKL------DQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSD 589 (859)
T ss_pred HHcCcHHHH-------------HHHHHHHHHHHHHH------HHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 987774211 11333333333332 11111 1222211100 2334445555555555654 3
Q ss_pred h----HHHHHHHHHHhhhcCc-hhhHHHHHHHHHHHhhCCCcchhHHHHHHhhhc---ccCCchHHHHHHHHHHcCcCCC
Q 003201 407 V----NAIVDRLLQFLEMEKD-YVTAEALVLVKDLLRKYPQWSHDCIAVVGSISS---QNVQEPKAKAALIWMLGEYSQD 478 (840)
Q Consensus 407 ~----~~~v~~Ll~LL~~~~~-~v~~e~v~~i~~il~~~p~~~~~~~~~l~~l~~---~~i~~~~ak~a~iwilGEy~~~ 478 (840)
. ...+..++++++.+.+ .+-+|+.-.+--++..-...+......+..++. .+.++-.+-++++=++|.-+.-
T Consensus 590 ~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~ra 669 (859)
T KOG1241|consen 590 IREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARA 669 (859)
T ss_pred chhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 3 3345555666666444 455555544444433222111111111111111 3556777778888888887765
Q ss_pred CCC-----hHHHHHHHHHhhccC--CcHHHHHHHHHHHhHHhhcCChhHHH---HHHHHHHhhc
Q 003201 479 MQD-----APYILESLTENWEEE--PSAEVRLHLLTAVMKCFFKRPPETQK---VLGAALAAGL 532 (840)
Q Consensus 479 i~~-----~~~il~~l~~~~~~e--~~~~vk~~lLta~~Kl~~~~p~e~~~---~l~~vL~~~~ 532 (840)
..+ ..+++..+++....+ + ..||-++|+.+.-+.+.-....++ ++..+|+.+.
T Consensus 670 L~~~i~py~d~~mt~Lvq~Lss~~~h-R~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as 732 (859)
T KOG1241|consen 670 LEDDILPYCDELMTVLVQCLSSPNLH-RNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQAS 732 (859)
T ss_pred HHhhhhhHHHHHHHHHHHHccCcccc-ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 432 556777777766543 3 679999999999988765444444 3344455443
No 84
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=10 Score=48.96 Aligned_cols=397 Identities=13% Similarity=0.118 Sum_probs=202.8
Q ss_pred HHHHHhccCCC-ChHHHHHHHHHHHHHHhhcCCccc--CCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHH
Q 003201 137 VGPLGLGLKDN-NSYVRTVAVIGVLKLYHISAPTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEA 213 (840)
Q Consensus 137 ~~~v~~~L~d~-~pyVRK~Aala~~kl~~~~p~~~~--~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~ 213 (840)
+--..++.+|. ...=||=||.|+-.+-....+... -+.++++|++- --|+|+.|..+-.....-+.. +++.
T Consensus 958 VYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY-~yDP~~~Vq~aM~sIW~~Li~-D~k~---- 1031 (1702)
T KOG0915|consen 958 VYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRY-QYDPDKKVQDAMTSIWNALIT-DSKK---- 1031 (1702)
T ss_pred HHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhh-ccCCcHHHHHHHHHHHHHhcc-ChHH----
Confidence 33344555555 467788999999999887665541 14467888886 679999988776555444433 2110
Q ss_pred HHHHHhhccHHHHHHHHHhhccCChhHH-----HHHHHHHHhcCCCChhHHHHHHHHHHHHh----------ccCChHHH
Q 003201 214 SREREALISKPVIYYLLNRIKEFSEWAQ-----CLVLELVAKYVPLDSNEIFDIMNLLEDRL----------QHANGAVV 278 (840)
Q Consensus 214 ~~~~~~li~~~~~~~Ll~~l~~~~~W~Q-----i~iL~lL~~y~p~~~~e~~~il~~l~~~L----------~~~n~aVv 278 (840)
.-+ ..-..++..|+..+ .+.+|-. .-+.++|+. +...+...++-+.....+ +.+..-..
T Consensus 1032 ~vd---~y~neIl~eLL~~l-t~kewRVReasclAL~dLl~g--~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~ 1105 (1702)
T KOG0915|consen 1032 VVD---EYLNEILDELLVNL-TSKEWRVREASCLALADLLQG--RPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAA 1105 (1702)
T ss_pred HHH---HHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001 11123455555443 3678863 234445543 222222333333222222 22221111
Q ss_pred HHHHHHHHhccC-CCchhHHHHHHHHHHHHHH--hhcCCCchhHHHHHHHHHHHHhhCCCcccccccEE-EEccCCCHHH
Q 003201 279 LSTIKVFLHLTL-SMTDVHQQVYERIKAPLLT--LVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHF-YCQYNEPSYV 354 (840)
Q Consensus 279 leaik~il~l~~-~~~~~~~~~l~rl~~~L~~--lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f-~c~~~dp~~I 354 (840)
-.-.|+++.+.. ....-.++++.-+-+.|+. .+ |+=+++|-..+..+..|+...|..+.+|...+ .|+-+
T Consensus 1106 ~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~----- 1179 (1702)
T KOG0915|consen 1106 RALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLN----- 1179 (1702)
T ss_pred HHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHH-----
Confidence 122233333322 1222234455444443321 23 56789999999999999999999888887532 22211
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCchhhHHHHHHHH
Q 003201 355 KKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVK 434 (840)
Q Consensus 355 K~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~~~~v~~Ll~LL~~~~~~v~~e~v~~i~ 434 (840)
.. ..+=.++ +.|+.-.-.....+++.....=+-|-. ..++++-+++..-...+-.|.+-++.
T Consensus 1180 ----------~~-s~lE~~v----LnYls~r~~~~e~ealDt~R~s~akss---pmmeTi~~ci~~iD~~vLeelip~l~ 1241 (1702)
T KOG0915|consen 1180 ----------AY-SELEPQV----LNYLSLRLINIETEALDTLRASAAKSS---PMMETINKCINYIDISVLEELIPRLT 1241 (1702)
T ss_pred ----------Hc-cccchHH----HHHHHHhhhhhHHHHHHHHHHhhhcCC---cHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 00 0111111 223221112233334433332222321 12334444444433456667777777
Q ss_pred HHHhhCCCcch--hHHHHHHhhhcccCCchHHHHHHHHHHcCcCCCC-CChHHHHHHHHHhhccCCcHHHHHHHHHHHhH
Q 003201 435 DLLRKYPQWSH--DCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDM-QDAPYILESLTENWEEEPSAEVRLHLLTAVMK 511 (840)
Q Consensus 435 ~il~~~p~~~~--~~~~~l~~l~~~~i~~~~ak~a~iwilGEy~~~i-~~~~~il~~l~~~~~~e~~~~vk~~lLta~~K 511 (840)
+++|..-.+-. .|...++.+ .-.||..+ +-...+++.++-.+.+-+ +.+|-+.=.|..+
T Consensus 1242 el~R~sVgl~Tkvg~A~fI~~L-----------------~~r~~~emtP~sgKll~al~~g~~dRN-esv~kafAsAmG~ 1303 (1702)
T KOG0915|consen 1242 ELVRGSVGLGTKVGCASFISLL-----------------VQRLGSEMTPYSGKLLRALFPGAKDRN-ESVRKAFASAMGY 1303 (1702)
T ss_pred HHHhccCCCCcchhHHHHHHHH-----------------HHHhccccCcchhHHHHHHhhcccccc-HHHHHHHHHHHHH
Confidence 77776544322 111112111 11244333 446778888888888877 8899999999999
Q ss_pred Hhhc-CChhHHHHHHHHHHhhccCCChHHHhHHHHHHHHccCCHHHHHhhcCCCCCCc--cccc-cCCCHHHHHHHHHhh
Q 003201 512 CFFK-RPPETQKVLGAALAAGLADFHQDVHDRALFYHRLLQYNVSVAERVVNPPKQAV--SVFA-DTQSSEIKDRIFDEF 587 (840)
Q Consensus 512 l~~~-~p~e~~~~l~~vL~~~~~d~d~dVrdRA~~Y~rLL~~~~~~a~~vv~~~~p~~--~~~~-~~~~~~~~~~l~~~~ 587 (840)
|+-. .|+++++++..++.....+.+..=+-++.....+.++.++..+..-.+=+|.+ .-+. +....++.++++.++
T Consensus 1304 L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~ 1383 (1702)
T KOG0915|consen 1304 LAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKANQELWNDVWAEL 1383 (1702)
T ss_pred HHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 9854 45578888888888766543222155555544455555544332222222332 1111 233455666666554
No 85
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=95.19 E-value=0.19 Score=54.59 Aligned_cols=210 Identities=17% Similarity=0.171 Sum_probs=145.0
Q ss_pred HHHHHhhcCCCChhhHhHHHHHhhCCChh--hhHHHH-----HHHHHhccCCCCh--HHHHHHHHHHHHHHh-hcCCccc
Q 003201 102 INFLQRDCKDEDPMIRGLALRSLCSLRVA--NLVEYL-----VGPLGLGLKDNNS--YVRTVAVIGVLKLYH-ISAPTCI 171 (840)
Q Consensus 102 iNtl~KDl~~~Np~ir~LALr~l~~I~~~--~i~e~l-----~~~v~~~L~d~~p--yVRK~Aala~~kl~~-~~p~~~~ 171 (840)
+--|..=|.+++..+|--|+-+||+|... .+-+++ ..++..++.+..+ -.-|.|--.+-.+++ ++|.
T Consensus 159 VPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~--- 235 (526)
T COG5064 159 VPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP--- 235 (526)
T ss_pred hHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCC---
Confidence 44566667899999999999999999542 233333 4567777766655 344677788888886 4553
Q ss_pred CCCc------hHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHH
Q 003201 172 DADF------PPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVL 245 (840)
Q Consensus 172 ~~~~------~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL 245 (840)
++| ++.|.+| +...|+-|+.-|.=++..+.. +.. .|.+ ..++..+..+|+..|...+--.|.-+|
T Consensus 236 -P~w~~isqalpiL~KL-iys~D~evlvDA~WAiSYlsD--g~~---E~i~--avld~g~~~RLvElLs~~sa~iqtPal 306 (526)
T COG5064 236 -PDWSNISQALPILAKL-IYSRDPEVLVDACWAISYLSD--GPN---EKIQ--AVLDVGIPGRLVELLSHESAKIQTPAL 306 (526)
T ss_pred -CchHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHhcc--CcH---HHHH--HHHhcCCcHHHHHHhcCccccccCHHH
Confidence 444 5778887 689999999999999988853 211 1222 223444556788888777777799999
Q ss_pred HHHHhcCCCChhHHHH-----HHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHH-HHHHHHHHhhcCCCchhH
Q 003201 246 ELVAKYVPLDSNEIFD-----IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQS 319 (840)
Q Consensus 246 ~lL~~y~p~~~~e~~~-----il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~-rl~~~L~~lLss~~~nir 319 (840)
+.+......+.....- .++.+.++|+|.-..+--||+.++-.++.....-.+.+++ .+++||+.+|++-+--+|
T Consensus 307 R~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~k 386 (526)
T COG5064 307 RSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIK 386 (526)
T ss_pred HhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 9999887665544333 3566778888877789999999999888765443344444 477899999987555444
Q ss_pred HHHH
Q 003201 320 YAVL 323 (840)
Q Consensus 320 Y~aL 323 (840)
--|-
T Consensus 387 KEAC 390 (526)
T COG5064 387 KEAC 390 (526)
T ss_pred HHHH
Confidence 4333
No 86
>PF02296 Alpha_adaptin_C: Alpha adaptin AP2, C-terminal domain; InterPro: IPR003164 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. AP adaptor alpha-adaptin can be divided into a trunk domain and the C-terminal appendage domain (or ear domain), separated by a linker region. The C-terminal appendage domain regulates translocation of endocytic accessory proteins to the bud site []. This entry represents a subdomain of the appendage (ear) domain of alpha-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1KYF_A 1B9K_A 1QTS_A 1KYU_A 2VJ0_A 1KY6_A 1W80_A 3HS8_A 1KYD_A 1QTP_A ....
Probab=95.18 E-value=0.12 Score=48.24 Aligned_cols=102 Identities=16% Similarity=0.252 Sum_probs=56.9
Q ss_pred CCCChHHHHHHhhccCcccce-eeeeCccCccCCCCHHHHHHHhhhcCEEEEeecCCCCceE-EEE----eeeccCCCce
Q 003201 725 AILDPGTFQQKWRQLPISLSQ-EFSLSPEGVAALTTPQALLWHMQGHSIHCIASGGHSPNFK-FFF----FAQKAEESSN 798 (840)
Q Consensus 725 ~~l~~~~Fq~~W~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~I~tiAsg~~~~~~k-~y~----yaq~~~~~~~ 798 (840)
..|++++|-++|++|...... +..+...+.....+.+.+.+.|...|+..+- | .|++-+ ++- +.+. +.+.-
T Consensus 5 ~~l~~~~Ff~RWkql~~~~~E~Q~vf~~~~~~~~~~~~~~~~~l~g~~~~vl~-~-vDpnp~n~v~Agi~~t~~-~g~~g 81 (113)
T PF02296_consen 5 TTLSSEDFFQRWKQLGGPPQEAQEVFKLKDAKRPMDLESIRRKLEGFGFAVLD-G-VDPNPNNIVGAGIFHTKS-SGNVG 81 (113)
T ss_dssp ----HHHHHHHHTTT-SGGGEEEEEEE----SS---HHHHHHHHHHHTSEEET-S-SSSSTTSEEEEEEEE-S--S-EEE
T ss_pred ccCCHHHHHHHHHhccCCccccEEEEcccccCCcccHHHHHHHHhcCCeEecC-C-CCCCcccEEEEEEEEecC-CCcEE
Confidence 568999999999999754321 2222311112357889999999999998886 4 333222 221 2221 22333
Q ss_pred EEEEEEEecCCCceEEEEecCChhhHHHHHH
Q 003201 799 FLVECIINTSSAKAQVKIKADDQSTSQAFSD 829 (840)
Q Consensus 799 fL~El~i~~~~~~~~~tvKs~~~~~~~~f~~ 829 (840)
.|+=+--+.....+++||||.++.....+.+
T Consensus 82 cLlRlE~n~~~~~~RlTvRst~~~vs~~l~~ 112 (113)
T PF02296_consen 82 CLLRLEPNQDAKMFRLTVRSTDPSVSKALCK 112 (113)
T ss_dssp EEEEEEEETTTTEEEEEEEESSHHHHHHHHH
T ss_pred EEEEEeECCcCCeEEEEEEECChhHHHHHhc
Confidence 4444444577889999999999887665543
No 87
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=95.11 E-value=0.64 Score=50.61 Aligned_cols=243 Identities=16% Similarity=0.175 Sum_probs=147.6
Q ss_pred ChHHHHHHHHHHHHHHhhcC---CcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHH
Q 003201 148 NSYVRTVAVIGVLKLYHISA---PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKP 224 (840)
Q Consensus 148 ~pyVRK~Aala~~kl~~~~p---~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~ 224 (840)
+....=-|+-++-.+-.-.. ..+.+.+.++.+..| |.+++..|.-.++=+|-.|+-..+ .|++.. +.-.
T Consensus 128 ~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiql-L~s~~~~V~eQavWALGNiAGDS~-----~~RD~v--L~~g 199 (526)
T COG5064 128 RDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQL-LSSTEDDVREQAVWALGNIAGDSE-----GCRDYV--LQCG 199 (526)
T ss_pred hhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHH-HcCchHHHHHHHHHHhccccCCch-----hHHHHH--HhcC
Confidence 33444477777777654322 234578889999997 689999999999999999875443 365542 2112
Q ss_pred HHHHHHHhhccCChhHHHHHHH----HHHhcC-----CCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchh
Q 003201 225 VIYYLLNRIKEFSEWAQCLVLE----LVAKYV-----PLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDV 295 (840)
Q Consensus 225 ~~~~Ll~~l~~~~~W~Qi~iL~----lL~~y~-----p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~ 295 (840)
.+.-+|+.+..... .+.+|+ .|..++ |.+-......++.+..++.+..+-|+..|...+-++.....+-
T Consensus 200 aleplL~ll~ss~~--~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~ 277 (526)
T COG5064 200 ALEPLLGLLLSSAI--HISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEK 277 (526)
T ss_pred chHHHHHHHHhccc--hHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHH
Confidence 34445554432211 233333 233333 2233456677888889999999999999999999886543222
Q ss_pred HHHHHH-HHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCC---c-ccc-cccEEE-EccCCCHHHHHHHHHHHHhccCC
Q 003201 296 HQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF---I-FAS-DYKHFY-CQYNEPSYVKKLKLEMLTAVANE 368 (840)
Q Consensus 296 ~~~~l~-rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~---~-~~~-~~~~f~-c~~~dp~~IK~~kLdiL~~L~n~ 368 (840)
.+.++. ++.+-|+.+|++.+..++--+|+.+.-|+.-.-. + +.- -++.|- .+.+.-.-||+++--.+..+ +.
T Consensus 278 i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNI-TA 356 (526)
T COG5064 278 IQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNI-TA 356 (526)
T ss_pred HHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccc-cc
Confidence 223332 2333477889989999999999988777643211 1 110 111111 12333356888877777665 34
Q ss_pred CCHHHH--------HHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 003201 369 SNTYEI--------VTELCEYAANVDIPIARESIRAVGKIA 401 (840)
Q Consensus 369 ~Nv~~I--------v~EL~~y~~~~d~~~~~~~i~aI~~la 401 (840)
.|.++| +.-|.+.+...|.-+++++.=||....
T Consensus 357 Gnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNat 397 (526)
T COG5064 357 GNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNAT 397 (526)
T ss_pred CCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 555543 334555666667778888888876654
No 88
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.91 E-value=12 Score=45.28 Aligned_cols=274 Identities=16% Similarity=0.163 Sum_probs=137.7
Q ss_pred HhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcC-CChhHHHHHHHHHHHHHhhccCcc----hHHHH
Q 003201 141 GLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLND-PDPQVVANCLSALQEIWSLEASTS----EEASR 215 (840)
Q Consensus 141 ~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D-~d~~Vv~~al~~L~eI~~~~~~~~----~~~~~ 215 (840)
-+.-+..=+-=||.|+.|+--+-++|.+.|...++.+.+..| -+| .|+-.+..++-.++-+..++..+. ....-
T Consensus 29 DRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL-~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsd 107 (970)
T KOG0946|consen 29 DRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVL-QRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSD 107 (970)
T ss_pred HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH-hhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhh
Confidence 333344556679999999999999998888767777777665 566 578888888888877765542100 00000
Q ss_pred HH--H----hhccHHHHHHHHHhhccCC---hhHHHHHHHHHHhcCCCChhHHHHH-------HHHHHHHhccCChHHHH
Q 003201 216 ER--E----ALISKPVIYYLLNRIKEFS---EWAQCLVLELVAKYVPLDSNEIFDI-------MNLLEDRLQHANGAVVL 279 (840)
Q Consensus 216 ~~--~----~li~~~~~~~Ll~~l~~~~---~W~Qi~iL~lL~~y~p~~~~e~~~i-------l~~l~~~L~~~n~aVvl 279 (840)
+. | +.-++..+.-|+..+..++ -|--|.+|..+.+..|. ++.+. +..+...|..+-.-|.=
T Consensus 108 d~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~---e~q~~ll~~P~gIS~lmdlL~DsrE~IRN 184 (970)
T KOG0946|consen 108 DLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPT---ELQDALLVSPMGISKLMDLLRDSREPIRN 184 (970)
T ss_pred HHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCH---HHHHHHHHCchhHHHHHHHHhhhhhhhch
Confidence 10 1 1122333444555554443 46666666666655443 33322 12233333333222333
Q ss_pred HHHHHHHhccCCCchhHHH-HHHHHHHHHHHhhcCCCchh--HHHHHHHHHHHH---hhC---CCcccc--cc---c---
Q 003201 280 STIKVFLHLTLSMTDVHQQ-VYERIKAPLLTLVSSGSPEQ--SYAVLSHLHILV---MRA---PFIFAS--DY---K--- 342 (840)
Q Consensus 280 eaik~il~l~~~~~~~~~~-~l~rl~~~L~~lLss~~~ni--rY~aL~~l~~l~---~~~---p~~~~~--~~---~--- 342 (840)
+++-+++.+....+.+++- +++.+-.-|..++.. ++++ -.++.+.+..|. ..+ -.+|.. |+ .
T Consensus 185 e~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIee-EGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL 263 (970)
T KOG0946|consen 185 EAILLLSELVKDNSSIQKLVAFENAFERLFSIIEE-EGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLL 263 (970)
T ss_pred hHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHh-cCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhc
Confidence 4444566776666665431 223333334445542 2333 245555554443 221 112221 11 0
Q ss_pred EEEEccCC------C--HHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHH
Q 003201 343 HFYCQYNE------P--SYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRL 414 (840)
Q Consensus 343 ~f~c~~~d------p--~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~~~~v~~L 414 (840)
..|...|+ + ..--..+|+++..++.+.|-..+...=..- + .....+++|
T Consensus 264 ~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~------------l-----------~ss~ll~~L 320 (970)
T KOG0946|consen 264 SVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKA------------L-----------VSSHLLDVL 320 (970)
T ss_pred CcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH------------H-----------HHcchHHHH
Confidence 11111111 1 122345666666677766655554321000 0 012345666
Q ss_pred HHHhhhcC--chhhHHHHHHHHHHHhhCCC
Q 003201 415 LQFLEMEK--DYVTAEALVLVKDLLRKYPQ 442 (840)
Q Consensus 415 l~LL~~~~--~~v~~e~v~~i~~il~~~p~ 442 (840)
..++-..+ -.|..++|.++..++|.+..
T Consensus 321 c~il~~~~vp~dIltesiitvAevVRgn~~ 350 (970)
T KOG0946|consen 321 CTILMHPGVPADILTESIITVAEVVRGNAR 350 (970)
T ss_pred HHHHcCCCCcHhHHHHHHHHHHHHHHhchH
Confidence 66555543 24667778888888876544
No 89
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=94.74 E-value=2.1 Score=53.71 Aligned_cols=216 Identities=17% Similarity=0.205 Sum_probs=134.7
Q ss_pred HHHHHHHhhcCCCChhhHhHHHHHhhCCCh----------hhhHHHHHHHHHhccCC-CChHHHHHHHHHHHHHHh----
Q 003201 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRV----------ANLVEYLVGPLGLGLKD-NNSYVRTVAVIGVLKLYH---- 164 (840)
Q Consensus 100 L~iNtl~KDl~~~Np~ir~LALr~l~~I~~----------~~i~e~l~~~v~~~L~d-~~pyVRK~Aala~~kl~~---- 164 (840)
-+.--+..=+.|+.+.||+.||++++.+-. --+.||+.|.+..++.| ...+||=+=|-|+.++-.
T Consensus 462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r 541 (1431)
T KOG1240|consen 462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR 541 (1431)
T ss_pred hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH
Confidence 566777777889999999999999987522 23689999999999999 667898776666554422
Q ss_pred --------------hcCCc--ccCCC-------c----hHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHH
Q 003201 165 --------------ISAPT--CIDAD-------F----PPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRER 217 (840)
Q Consensus 165 --------------~~p~~--~~~~~-------~----~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~ 217 (840)
-+|+. ..+.. + -+.+..| +.|++|.|..+-+-.+..++.-=+.. +
T Consensus 542 Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sL-lsd~~~~Vkr~Lle~i~~LC~FFGk~-----k-- 613 (1431)
T KOG1240|consen 542 FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSL-LSDSPPIVKRALLESIIPLCVFFGKE-----K-- 613 (1431)
T ss_pred HHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHH-HcCCchHHHHHHHHHHHHHHHHhhhc-----c--
Confidence 12222 11111 1 1234444 78999999887777776665421110 0
Q ss_pred HhhccHHHHHHHHHhhccCChhHHHHHHHHHH---hcC-CCChhHHHHHHHHHHHHhccCChHHHHHHHHH---HHhccC
Q 003201 218 EALISKPVIYYLLNRIKEFSEWAQCLVLELVA---KYV-PLDSNEIFDIMNLLEDRLQHANGAVVLSTIKV---FLHLTL 290 (840)
Q Consensus 218 ~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~---~y~-p~~~~e~~~il~~l~~~L~~~n~aVvleaik~---il~l~~ 290 (840)
-+--++.+|+.-|++.++-+.+...+-+. -|. +... .+-++..+..-|+..-.+|+..|..+ ++++..
T Consensus 614 ---sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~--seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l 688 (1431)
T KOG1240|consen 614 ---SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSV--SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL 688 (1431)
T ss_pred ---cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeH--HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc
Confidence 01115788999999996667888888776 232 3221 22355666666777778887655554 454432
Q ss_pred CCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhh
Q 003201 291 SMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMR 332 (840)
Q Consensus 291 ~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~ 332 (840)
-. +..+..+..-..=||-..+.=||+.++..|..+.+.
T Consensus 689 l~----K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 689 LR----KPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred cc----hHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 21 112222333333355555666899999888877764
No 90
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.69 E-value=13 Score=44.54 Aligned_cols=333 Identities=16% Similarity=0.223 Sum_probs=169.4
Q ss_pred HHHHHHHHHhccCCCchHH-HHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHH
Q 003201 81 KMCYLYVGNYAKVNPDLAL-LTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGV 159 (840)
Q Consensus 81 kL~YLyl~~~~~~~~dl~l-L~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~ 159 (840)
||.|+|+.-| +=|.-. -++|-+. .-.=+.-.|--+++..|-+ ...++...+...|++=|.+.+|-----|..|+
T Consensus 61 KLlyI~llg~---dIdFGhmEaV~LLs-s~kysEKqIGYl~is~L~n-~n~dl~klvin~iknDL~srn~~fv~LAL~~I 135 (938)
T KOG1077|consen 61 KLLYIYLLGY---DIDFGHMEAVNLLS-SNKYSEKQIGYLFISLLLN-ENSDLMKLVINSIKNDLSSRNPTFVCLALHCI 135 (938)
T ss_pred HHHHHHHhcC---ccccchHHHHHHhh-cCCccHHHHhHHHHHHHHh-cchHHHHHHHHHHHhhhhcCCcHHHHHHHHHH
Confidence 6788888764 223222 2444332 1111223444466665544 34788899999999999999998777888888
Q ss_pred HHHHhhcCCcccCCCchHHHHHHHhc-CCChhHH-HHHHHHHHHHHhhccCcchHHHHHHHhhccH-HHHHHHHHhhccC
Q 003201 160 LKLYHISAPTCIDADFPPTLKHLMLN-DPDPQVV-ANCLSALQEIWSLEASTSEEASREREALISK-PVIYYLLNRIKEF 236 (840)
Q Consensus 160 ~kl~~~~p~~~~~~~~~~~L~~lLL~-D~d~~Vv-~~al~~L~eI~~~~~~~~~~~~~~~~~li~~-~~~~~Ll~~l~~~ 236 (840)
..+-.. +.. +.|-+.+.++|.. +.-+.|. .+|+++ ..+.++.|+. +.+ .-+.+++..|.+-
T Consensus 136 ~niG~r--e~~--ea~~~DI~KlLvS~~~~~~vkqkaALcl-L~L~r~spDl-----------~~~~~W~~riv~LL~D~ 199 (938)
T KOG1077|consen 136 ANIGSR--EMA--EAFADDIPKLLVSGSSMDYVKQKAALCL-LRLFRKSPDL-----------VNPGEWAQRIVHLLDDQ 199 (938)
T ss_pred HhhccH--hHH--HHhhhhhHHHHhCCcchHHHHHHHHHHH-HHHHhcCccc-----------cChhhHHHHHHHHhCcc
Confidence 877643 122 3455566666322 3334454 455554 4566655542 222 1233333333332
Q ss_pred C---hhHHHHHHHHHHhcCCCChhHH-----HHHHHHHHH---Hhcc------CChHHHHHHHHHHHhccCC-CchhHHH
Q 003201 237 S---EWAQCLVLELVAKYVPLDSNEI-----FDIMNLLED---RLQH------ANGAVVLSTIKVFLHLTLS-MTDVHQQ 298 (840)
Q Consensus 237 ~---~W~Qi~iL~lL~~y~p~~~~e~-----~~il~~l~~---~L~~------~n~aVvleaik~il~l~~~-~~~~~~~ 298 (840)
+ --.-+.++.+|.++.|.+-... ..+...+.. -++. .++=...-.++++..+... ++...
T Consensus 200 ~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r-- 277 (938)
T KOG1077|consen 200 HMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTR-- 277 (938)
T ss_pred ccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHH--
Confidence 2 1124566777776655332110 011111100 0000 1121223333433333211 11111
Q ss_pred HHHHHHHHHHHhhcCC----------CchhHHHHHHH-HHHHHhh--CCCccccc---ccEEEEccCCCHHHHHHHHHHH
Q 003201 299 VYERIKAPLLTLVSSG----------SPEQSYAVLSH-LHILVMR--APFIFASD---YKHFYCQYNEPSYVKKLKLEML 362 (840)
Q Consensus 299 ~l~rl~~~L~~lLss~----------~~nirY~aL~~-l~~l~~~--~p~~~~~~---~~~f~c~~~dp~~IK~~kLdiL 362 (840)
.++...|-++|+-. ..|.+-.+|-- |..+..- .|+++..- +-.|. .+..+-||.++||-+
T Consensus 278 --~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fl--s~rE~NiRYLaLEsm 353 (938)
T KOG1077|consen 278 --ARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFL--SHRETNIRYLALESM 353 (938)
T ss_pred --HHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh--hcccccchhhhHHHH
Confidence 11222222222210 11222222222 2222211 12222221 11121 344466999999999
Q ss_pred HhccCCCCHHHHHHHHHH----hhh-cCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCchhhHHHHHHHHHHH
Q 003201 363 TAVANESNTYEIVTELCE----YAA-NVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLL 437 (840)
Q Consensus 363 ~~L~n~~Nv~~Iv~EL~~----y~~-~~d~~~~~~~i~aI~~la~k~~~~~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il 437 (840)
+.||+.+-..+.|+.=++ -+. +.|..+|++++.-+=-.+-. .++..+|+-||+.|.+..-.+.+|.+.-+.-+-
T Consensus 354 ~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~-~Nak~IV~elLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 354 CKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV-SNAKQIVAELLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch-hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 999998877777664333 333 67999999988876444422 235679999999999976667777776666666
Q ss_pred hhCC
Q 003201 438 RKYP 441 (840)
Q Consensus 438 ~~~p 441 (840)
.+|.
T Consensus 433 EKyA 436 (938)
T KOG1077|consen 433 EKYA 436 (938)
T ss_pred HHhc
Confidence 6764
No 91
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=94.47 E-value=17 Score=44.87 Aligned_cols=416 Identities=15% Similarity=0.125 Sum_probs=197.0
Q ss_pred HHHHHHhccCCCc-hHHHHHHHHHhhcCCCChhhHhHHHHHhhCCCh----hhhHHHHHHHHHhccCCCChHHHHHHHHH
Q 003201 84 YLYVGNYAKVNPD-LALLTINFLQRDCKDEDPMIRGLALRSLCSLRV----ANLVEYLVGPLGLGLKDNNSYVRTVAVIG 158 (840)
Q Consensus 84 YLyl~~~~~~~~d-l~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~----~~i~e~l~~~v~~~L~d~~pyVRK~Aala 158 (840)
=++...|-...++ +=.=.-+.++.=|+|.+|++|-.+=+-++.+.. ......+.+....+..|...-||=.|.-+
T Consensus 220 glf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~ 299 (759)
T KOG0211|consen 220 GLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVES 299 (759)
T ss_pred hhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHH
Confidence 3444455444423 222344566667788888888888777777643 34555666677777788888888888888
Q ss_pred HHHHHhhcCCc-ccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCC
Q 003201 159 VLKLYHISAPT-CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFS 237 (840)
Q Consensus 159 ~~kl~~~~p~~-~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~ 237 (840)
+..+.....+. =....+.+.+..+ .+|.+-.|.......+.++...=+. . ..+ ....+ .+..++ .-.
T Consensus 300 ~~~l~~l~~~~~d~~~~~~~~l~~~-~~d~~~~v~~~~~~~~~~L~~~~~~-~----~~~-~~~~~-~~~~l~----~~~ 367 (759)
T KOG0211|consen 300 LVSLLDLLDDDDDVVKSLTESLVQA-VEDGSWRVSYMVADKFSELSSAVGP-S----ATR-TQLVP-PVSNLL----KDE 367 (759)
T ss_pred HHHHHHhcCCchhhhhhhhHHHHHH-hcChhHHHHHHHhhhhhhHHHHhcc-c----cCc-ccchh-hHHHHh----cch
Confidence 87777654432 1124556666665 5777777776666666665431110 0 000 01111 111121 122
Q ss_pred hhH----HHHHHHHHHhcCCCCh---hHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHh
Q 003201 238 EWA----QCLVLELVAKYVPLDS---NEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTL 310 (840)
Q Consensus 238 ~W~----Qi~iL~lL~~y~p~~~---~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~l 310 (840)
+|- -..-.+-+..|.+.+. --...++..+..+...+|.-|--+.+..+..+.+..+. .+.+.-+.+.+...
T Consensus 368 ~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti~~llp~~~~~ 445 (759)
T KOG0211|consen 368 EWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTISELLPLLIGN 445 (759)
T ss_pred hhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCccccChhhhhh
Confidence 232 1222223333322110 01122344444444444444444444444443222110 01111233344556
Q ss_pred hcCCCchhHHHHHHHHHHHHhhCCC-----cccccccEEEEccCC-CHHHHHHHHHHHHhccCCCCHHHHHHHHH----H
Q 003201 311 VSSGSPEQSYAVLSHLHILVMRAPF-----IFASDYKHFYCQYNE-PSYVKKLKLEMLTAVANESNTYEIVTELC----E 380 (840)
Q Consensus 311 Lss~~~nirY~aL~~l~~l~~~~p~-----~~~~~~~~f~c~~~d-p~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~----~ 380 (840)
+++..++++--...++..+....+. +-+.++..+-++..| -..+|..-++-+-.++...-..-.-+++. .
T Consensus 446 l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~ 525 (759)
T KOG0211|consen 446 LKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRT 525 (759)
T ss_pred cchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHh
Confidence 6666677666555555444333221 112233333333222 24455555555544444433222222222 3
Q ss_pred hhhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHH-HHHhhhcCchhhHHHHHHHHHHHhhCCCcchhHHHHHHhhhcccC
Q 003201 381 YAANVDIPIARESIRAVGKIALQQYDVNAIVDRL-LQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNV 459 (840)
Q Consensus 381 y~~~~d~~~~~~~i~aI~~la~k~~~~~~~v~~L-l~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~~~~l~~l~~~~i 459 (840)
|+.+...++++.+.+.+..++++|. .+|+...+ -++|...++. .+
T Consensus 526 ~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~~~~i~k~L~~~~q~-----------------~y---------------- 571 (759)
T KOG0211|consen 526 WLPDHVYSIREAAARNLPALVETFG-SEWARLEEIPKLLAMDLQD-----------------NY---------------- 571 (759)
T ss_pred hhhhhHHHHHHHHHHHhHHHHHHhC-cchhHHHhhHHHHHHhcCc-----------------cc----------------
Confidence 3344445666666666666666665 45544332 2233322220 00
Q ss_pred CchHHHHHHHHHHcCcCCCCCC---hHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhc-CChhHHHHHHHHHHhhccCC
Q 003201 460 QEPKAKAALIWMLGEYSQDMQD---APYILESLTENWEEEPSAEVRLHLLTAVMKCFFK-RPPETQKVLGAALAAGLADF 535 (840)
Q Consensus 460 ~~~~ak~a~iwilGEy~~~i~~---~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~-~p~e~~~~l~~vL~~~~~d~ 535 (840)
..|.+.+.-+-+.+..... ..+++-.+.+--.+-. +.||.-..-.+-|+--. .++..+..+..++.....|.
T Consensus 572 ---~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~v-anVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~ 647 (759)
T KOG0211|consen 572 ---LVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPV-ANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQ 647 (759)
T ss_pred ---chhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCc-hhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCc
Confidence 0111111111111111111 2233333333223333 78887766655554322 22345667778888777899
Q ss_pred ChHHHhHHHHHHHHcc
Q 003201 536 HQDVHDRALFYHRLLQ 551 (840)
Q Consensus 536 d~dVrdRA~~Y~rLL~ 551 (840)
|.|||=||..-...+.
T Consensus 648 ~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 648 ELDVRYRAILAFGSIE 663 (759)
T ss_pred ccchhHHHHHHHHHHH
Confidence 9999999987766554
No 92
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.34 E-value=1.2 Score=49.00 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=101.8
Q ss_pred HHHHHHHH-HhhhcCCHHHHHHHHHHHHHHHhhcCCh-HHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchhHHH
Q 003201 372 YEIVTELC-EYAANVDIPIARESIRAVGKIALQQYDV-NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIA 449 (840)
Q Consensus 372 ~~Iv~EL~-~y~~~~d~~~~~~~i~aI~~la~k~~~~-~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~~~ 449 (840)
..+++.|. -.+++.|..+|+.+++.+|.++.-..+. ..++..+...++.+.+.+...++..+.|++..|+-..
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~----- 99 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI----- 99 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh-----
Confidence 37788876 5667789999999999999999876543 4578888888866666777788888999988775321
Q ss_pred HHHhhhcccCCchHHHHHHHHHHcCcCCCCCChHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCChhH-HHHHHHHH
Q 003201 450 VVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPET-QKVLGAAL 528 (840)
Q Consensus 450 ~l~~l~~~~i~~~~ak~a~iwilGEy~~~i~~~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~-~~~l~~vL 528 (840)
+.. ...+. .-.....+++.+.+.+..++ +++|......++||++..--.. ..++.+++
T Consensus 100 -~~~-----~~~~~--------------~~~~~~~l~~~l~~~l~~~~-~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Ll 158 (298)
T PF12719_consen 100 -FDS-----ESDND--------------ESVDSKSLLKILTKFLDSEN-PELQAIAVEGLCKLLLSGRISDPPKVLSRLL 158 (298)
T ss_pred -ccc-----hhccC--------------ccchHhHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 111 11111 12235566676666666676 9999999999999998754333 45666666
Q ss_pred Hhhcc---CCChHHHhHHHHHH
Q 003201 529 AAGLA---DFHQDVHDRALFYH 547 (840)
Q Consensus 529 ~~~~~---d~d~dVrdRA~~Y~ 547 (840)
-.+-+ ..|..+||==-.+.
T Consensus 159 l~yF~p~t~~~~~LrQ~L~~Ff 180 (298)
T PF12719_consen 159 LLYFNPSTEDNQRLRQCLSVFF 180 (298)
T ss_pred HHHcCcccCCcHHHHHHHHHHH
Confidence 65432 24677777433333
No 93
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.95 E-value=5.3 Score=50.32 Aligned_cols=232 Identities=12% Similarity=0.118 Sum_probs=131.5
Q ss_pred HHHHhcCCCccchhhhhhhhc-cCCCcchHHHHHHHHH----HhccCCCchHHHHHHHHHhh-cCCCChhhHhHHHHHhh
Q 003201 52 ISYMTIGIDVSAVFGEMVMCS-ATSDIVLKKMCYLYVG----NYAKVNPDLALLTINFLQRD-CKDEDPMIRGLALRSLC 125 (840)
Q Consensus 52 I~~m~lG~DvS~lF~~Vi~l~-~S~d~~~KkL~YLyl~----~~~~~~~dl~lL~iNtl~KD-l~~~Np~ir~LALr~l~ 125 (840)
.|+...+.|+...+.+-+... ++.|-..+.--|+.+. -.+...++-.+-..+++..- -++.++-++--|-|.|.
T Consensus 600 ~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~ 679 (1176)
T KOG1248|consen 600 DYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLE 679 (1176)
T ss_pred HHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHH
Confidence 355556778877777766544 4443222222222211 12344455444444544443 44558888877766555
Q ss_pred CC--------ChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcC----CcccCCCchHHHHHHHhcCCChhHHH
Q 003201 126 SL--------RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISA----PTCIDADFPPTLKHLMLNDPDPQVVA 193 (840)
Q Consensus 126 ~I--------~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p----~~~~~~~~~~~L~~lLL~D~d~~Vv~ 193 (840)
.+ -...-++++...+...+++.+.++|+.++-|+..+|+..| +.+ +..++.+.=+ ++|-|..-..
T Consensus 680 ~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~EvIL~-~Ke~n~~aR~ 756 (1176)
T KOG1248|consen 680 ELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIPEVILS-LKEVNVKARR 756 (1176)
T ss_pred HHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHHHHHh-cccccHHHHh
Confidence 43 2335566677777777777889999999999999999998 222 2222332222 3677777788
Q ss_pred HHHHHHHHHHh--hccCcchHHHHHHHhhccHHHHHHHHHhhcc----CChhH----HHHHHHHHHhcCC-CChhHHHHH
Q 003201 194 NCLSALQEIWS--LEASTSEEASREREALISKPVIYYLLNRIKE----FSEWA----QCLVLELVAKYVP-LDSNEIFDI 262 (840)
Q Consensus 194 ~al~~L~eI~~--~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~----~~~W~----Qi~iL~lL~~y~p-~~~~e~~~i 262 (840)
+|+..|.+|.. ..-....+.. ..++...+..+.. -..-. .+.+=.++..+.- .+.+-..++
T Consensus 757 ~Af~lL~~i~~i~~~~d~g~e~~--------~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~l 828 (1176)
T KOG1248|consen 757 NAFALLVFIGAIQSSLDDGNEPA--------SAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKL 828 (1176)
T ss_pred hHHHHHHHHHHHHhhhcccccch--------HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99999999983 1111000000 0122222222211 01111 2222233333322 244556788
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhccCCCch
Q 003201 263 MNLLEDRLQHANGAVVLSTIKVFLHLTLSMTD 294 (840)
Q Consensus 263 l~~l~~~L~~~n~aVvleaik~il~l~~~~~~ 294 (840)
++.+.-.|.+.+..|+-+||..+--+...+|.
T Consensus 829 i~~V~~~L~s~sreI~kaAI~fikvlv~~~pe 860 (1176)
T KOG1248|consen 829 ISMVCLYLASNSREIAKAAIGFIKVLVYKFPE 860 (1176)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999877655544554
No 94
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=93.70 E-value=11 Score=44.02 Aligned_cols=101 Identities=14% Similarity=0.134 Sum_probs=69.7
Q ss_pred HHHHHHhhcCCCChhhHhHHHHHhhCCCh-------hhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCccc-C
Q 003201 101 TINFLQRDCKDEDPMIRGLALRSLCSLRV-------ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI-D 172 (840)
Q Consensus 101 ~iNtl~KDl~~~Np~ir~LALr~l~~I~~-------~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~-~ 172 (840)
+--.+...++++|=.-|-.|.-.+|++.. ..++....|.|....+|+.-.|+.+++-|+.++-..-|+.+. .
T Consensus 367 Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~ 446 (858)
T COG5215 367 VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPC 446 (858)
T ss_pred HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCcc
Confidence 44456677889999999999999999843 346777788888888999999999999999999877666552 1
Q ss_pred CCchHHHHHHH--hcCCChhHHHHHHHHHHHH
Q 003201 173 ADFPPTLKHLM--LNDPDPQVVANCLSALQEI 202 (840)
Q Consensus 173 ~~~~~~L~~lL--L~D~d~~Vv~~al~~L~eI 202 (840)
..+......++ +.| +|-+..|+--....+
T Consensus 447 ~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nl 477 (858)
T COG5215 447 GHLVLEVSASLIGLMD-CPFRSINCSWRKENL 477 (858)
T ss_pred ccccHHHHHHHhhhhc-cchHHhhhHHHHHhH
Confidence 22333333332 123 566666665444443
No 95
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=93.61 E-value=1.7 Score=53.76 Aligned_cols=195 Identities=13% Similarity=0.107 Sum_probs=141.5
Q ss_pred hhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcC-CcccCCCchHH---HHHHHhcCCChhHHHHHHHHHHHHHh
Q 003201 129 VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISA-PTCIDADFPPT---LKHLMLNDPDPQVVANCLSALQEIWS 204 (840)
Q Consensus 129 ~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p-~~~~~~~~~~~---L~~lLL~D~d~~Vv~~al~~L~eI~~ 204 (840)
-.++..-+.+.+...+.|+++-=|+.|+-.+.+...-.+ +.. .++... +....+.|.|..|+..|...|..|+.
T Consensus 247 ~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~--~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~ 324 (815)
T KOG1820|consen 247 RVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIV--KGYTGLLGILLKIRLKDANINVVMLAAQILELIAK 324 (815)
T ss_pred hhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccc--cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 346778888899999999999999999999999998766 222 334333 33333679999999999999999987
Q ss_pred hccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCChHHHHHHHHH
Q 003201 205 LEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKV 284 (840)
Q Consensus 205 ~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~ 284 (840)
.-+..+.. ....++..++.++.+--.-..-.+++.+..+.- ..-..++++.+...+++-|+.+--+|...
T Consensus 325 ~lr~~~~~--------~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n--s~~l~~~~~~I~e~lk~knp~~k~~~~~~ 394 (815)
T KOG1820|consen 325 KLRPLFRK--------YAKNVFPSLLDRLKEKKSELRDALLKALDAILN--STPLSKMSEAILEALKGKNPQIKGECLLL 394 (815)
T ss_pred hcchhhHH--------HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 54432111 122345667777777777777777777777654 23356788999999999999998887776
Q ss_pred HHhccCCCc--hhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCC
Q 003201 285 FLHLTLSMT--DVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF 335 (840)
Q Consensus 285 il~l~~~~~--~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~ 335 (840)
+-....... ......+..+++.++...++.+.++|-+++..+.-+...+..
T Consensus 395 l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 395 LDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred HHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 544322111 122344566778888889899999999999999998877653
No 96
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.38 E-value=14 Score=46.62 Aligned_cols=207 Identities=15% Similarity=0.195 Sum_probs=135.0
Q ss_pred CChhHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHhccCChHHHHHHHHHHHhccCC--CchhHHHHHHHHHHHHHHhhc
Q 003201 236 FSEWAQCLVLELVAKYVPLDSNE-IFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLS--MTDVHQQVYERIKAPLLTLVS 312 (840)
Q Consensus 236 ~~~W~Qi~iL~lL~~y~p~~~~e-~~~il~~l~~~L~~~n~aVvleaik~il~l~~~--~~~~~~~~l~rl~~~L~~lLs 312 (840)
...+.+..+|+++....|.-++. ...+........+++++.|..-+-+++-.+... ......+-++-+.+.|..=++
T Consensus 628 ~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~q 707 (1176)
T KOG1248|consen 628 VASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQ 707 (1176)
T ss_pred hhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHh
Confidence 35677888888887776654333 334444444556777888988777777666543 122223334445555655566
Q ss_pred CCCchhHHHHHHHHHHHHhhCC----Ccccccc-cEEEEccCCCHHHHHHHHHHHHhcc---------CCCCHHHHHHHH
Q 003201 313 SGSPEQSYAVLSHLHILVMRAP----FIFASDY-KHFYCQYNEPSYVKKLKLEMLTAVA---------NESNTYEIVTEL 378 (840)
Q Consensus 313 s~~~nirY~aL~~l~~l~~~~p----~~~~~~~-~~f~c~~~dp~~IK~~kLdiL~~L~---------n~~Nv~~Iv~EL 378 (840)
+.+.-.|+-.|..+..|.+..| .++..-+ +.+.+..+.+.+-|+-+.++|+.|+ |+. ...+++|+
T Consensus 708 s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lnef 786 (1176)
T KOG1248|consen 708 SSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNEF 786 (1176)
T ss_pred ccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHHH
Confidence 6667789999999999998888 2222222 3344556677889999999999998 222 34566665
Q ss_pred HHhhhc--C-CHHHHHHH-HHHHHHHHhhcCCh------HHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCc
Q 003201 379 CEYAAN--V-DIPIARES-IRAVGKIALQQYDV------NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQW 443 (840)
Q Consensus 379 ~~y~~~--~-d~~~~~~~-i~aI~~la~k~~~~------~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~ 443 (840)
+.-+.. + |....... |.+|+.+...+.+. ..+++.+.-+|..+...+...+|-.++-++...|+.
T Consensus 787 l~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~ 861 (1176)
T KOG1248|consen 787 LSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEE 861 (1176)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHH
Confidence 543322 2 33333333 88898888877531 346666666777777788888888899888888864
No 97
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.31 E-value=5.1 Score=47.42 Aligned_cols=143 Identities=18% Similarity=0.232 Sum_probs=90.6
Q ss_pred ChhhHhHHHHHhhCC--ChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChh
Q 003201 113 DPMIRGLALRSLCSL--RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQ 190 (840)
Q Consensus 113 Np~ir~LALr~l~~I--~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~ 190 (840)
++-..-||=..+... .-|++.+..+..+..++.|.+.-||+.|+-++..+++-+|+.+ ....+.|..| |...|+.
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v--~kvaDvL~Ql-L~tdd~~ 111 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHV--SKVADVLVQL-LQTDDPV 111 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-H--HHHHHHHHHH-TT---HH
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHH--hHHHHHHHHH-HhcccHH
Confidence 455566666666664 5689999999999999999999999999999999999999888 6788888887 6777887
Q ss_pred HHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhc---cCChhHHHHHHHHHHhc-CCC-----C-hhHHH
Q 003201 191 VVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK---EFSEWAQCLVLELVAKY-VPL-----D-SNEIF 260 (840)
Q Consensus 191 Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~---~~~~W~Qi~iL~lL~~y-~p~-----~-~~e~~ 260 (840)
.+..+=.+|.++.+.+|. ..+.-|++.+. .-++-..-++|++|... .+- . .+|.+
T Consensus 112 E~~~v~~sL~~ll~~d~k---------------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e 176 (556)
T PF05918_consen 112 ELDAVKNSLMSLLKQDPK---------------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEME 176 (556)
T ss_dssp HHHHHHHHHHHHHHH-HH---------------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHH
T ss_pred HHHHHHHHHHHHHhcCcH---------------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHH
Confidence 777777778787766553 12334444443 45777788889888543 211 1 13343
Q ss_pred H-HHHHHHHHhccC
Q 003201 261 D-IMNLLEDRLQHA 273 (840)
Q Consensus 261 ~-il~~l~~~L~~~ 273 (840)
+ +++.+...|+..
T Consensus 177 ~~i~~~ikkvL~DV 190 (556)
T PF05918_consen 177 EFIVDEIKKVLQDV 190 (556)
T ss_dssp HHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHhc
Confidence 3 445666666553
No 98
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.29 E-value=0.32 Score=43.74 Aligned_cols=69 Identities=23% Similarity=0.183 Sum_probs=54.7
Q ss_pred HHHHHhhcCCCChhhHhHHHHHhhCCCh-----hhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcc
Q 003201 102 INFLQRDCKDEDPMIRGLALRSLCSLRV-----ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (840)
Q Consensus 102 iNtl~KDl~~~Np~ir~LALr~l~~I~~-----~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~ 170 (840)
-+...++++||.+-+||-||+.|+++.. ..-.+.+..-....|.|+++||==.|+-|+.-+...+|+.+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~v 78 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEV 78 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHH
Confidence 3566788899999999999999888622 23356777777888889999999899988888888888754
No 99
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=93.28 E-value=4.6 Score=46.47 Aligned_cols=224 Identities=17% Similarity=0.179 Sum_probs=121.2
Q ss_pred chHHHHHHHHHHhccCCCchHH----HHHHHHHhh-cCCCChhhHhHHHHHhhCCChh----hhHHHHHHHHHhcc-CCC
Q 003201 78 VLKKMCYLYVGNYAKVNPDLAL----LTINFLQRD-CKDEDPMIRGLALRSLCSLRVA----NLVEYLVGPLGLGL-KDN 147 (840)
Q Consensus 78 ~~KkL~YLyl~~~~~~~~dl~l----L~iNtl~KD-l~~~Np~ir~LALr~l~~I~~~----~i~e~l~~~v~~~L-~d~ 147 (840)
..+++++++...+..-+++..+ -.++.+.+- +...++..|-.|++.+|.+.+. +..+.+...+...+ ...
T Consensus 163 ~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~ 242 (415)
T PF12460_consen 163 QQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSE 242 (415)
T ss_pred ccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccC
Confidence 6889999998888777766543 233444444 4556799999999999988554 33344444444434 334
Q ss_pred ChHHHHHHHHHH-----HHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhcc
Q 003201 148 NSYVRTVAVIGV-----LKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALIS 222 (840)
Q Consensus 148 ~pyVRK~Aala~-----~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~ 222 (840)
.+--|..++..+ +-+-|.+|.. .++.+.|.++ +.|++.+ ..|..++.-+....+......+.....++.
T Consensus 243 ~~~~~~~~~~~~~Wi~KaLv~R~~~~~---~~~~~~L~~l-L~~~~~g--~~aA~~f~il~~d~~~~l~~~~~a~vklLy 316 (415)
T PF12460_consen 243 DSELRPQALEILIWITKALVMRGHPLA---TELLDKLLEL-LSSPELG--QQAAKAFGILLSDSDDVLNKENHANVKLLY 316 (415)
T ss_pred CcchhHHHHHHHHHHHHHHHHcCCchH---HHHHHHHHHH-hCChhhH--HHHHHHHhhHhcCcHHhcCccccchhhhHH
Confidence 444555544443 3345667765 4688888887 6774433 333334444433212110000111111222
Q ss_pred HH-----HHHHHHHhhccCChhHHHHHHHHHHhcCCCCh-----hHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCC
Q 003201 223 KP-----VIYYLLNRIKEFSEWAQCLVLELVAKYVPLDS-----NEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM 292 (840)
Q Consensus 223 ~~-----~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~-----~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~ 292 (840)
|+ ++.+|++.....+.=.+...|..|......-| .+..+++..+...|...+..|..++..++..+-...
T Consensus 317 kQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 317 KQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 22 33445544444443344444555544433222 345667778888888888888888888877664444
Q ss_pred chhHHHHHHHHHHHH
Q 003201 293 TDVHQQVYERIKAPL 307 (840)
Q Consensus 293 ~~~~~~~l~rl~~~L 307 (840)
+++...-+..+++-|
T Consensus 397 ~~~i~~hl~sLI~~L 411 (415)
T PF12460_consen 397 PELISEHLSSLIPRL 411 (415)
T ss_pred HHHHHHHHHHHHHHH
Confidence 443333333344333
No 100
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.96 E-value=1.1 Score=55.09 Aligned_cols=135 Identities=21% Similarity=0.195 Sum_probs=97.3
Q ss_pred hhhhhhhhccCCCcchHHH-HHHHHHHhccCCCchHHHHHHHHHhhc------------CCCChhhHhHHHHHhhCCChh
Q 003201 64 VFGEMVMCSATSDIVLKKM-CYLYVGNYAKVNPDLALLTINFLQRDC------------KDEDPMIRGLALRSLCSLRVA 130 (840)
Q Consensus 64 lF~~Vi~l~~S~d~~~KkL-~YLyl~~~~~~~~dl~lL~iNtl~KDl------------~~~Np~ir~LALr~l~~I~~~ 130 (840)
.||-|+|+++|+-.++|-+ +++....++-. +.- =--|.||. +.-+|.-|++|-=.|+.|..-
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD-~SC----Q~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~n 587 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVD-PSC----QADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRN 587 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcC-chh----HHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcc
Confidence 4999999999999999986 67777666533 321 11234552 223568899998888776321
Q ss_pred -------hhHHHHHHHHHhccCC-CChHHHHHHHHHHHHHHhhcCCcc---cCCCchHHHHHHHhcCCChhHHHHHHHHH
Q 003201 131 -------NLVEYLVGPLGLGLKD-NNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVVANCLSAL 199 (840)
Q Consensus 131 -------~i~e~l~~~v~~~L~d-~~pyVRK~Aala~~kl~~~~p~~~---~~~~~~~~L~~lLL~D~d~~Vv~~al~~L 199 (840)
-+-..++......|+| +.|..|.-.++|+.+++.-+++.- .+....++|..+ |.|+-|.|.++|+.||
T Consensus 588 f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~-LsD~vpEVRaAAVFAL 666 (1387)
T KOG1517|consen 588 FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILL-LSDPVPEVRAAAVFAL 666 (1387)
T ss_pred cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHH-hcCccHHHHHHHHHHH
Confidence 1223344455556677 479999999999999999888742 234556888887 7999999999999999
Q ss_pred HHHHh
Q 003201 200 QEIWS 204 (840)
Q Consensus 200 ~eI~~ 204 (840)
-.+..
T Consensus 667 gtfl~ 671 (1387)
T KOG1517|consen 667 GTFLS 671 (1387)
T ss_pred HHHhc
Confidence 88765
No 101
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=92.79 E-value=0.73 Score=47.01 Aligned_cols=102 Identities=18% Similarity=0.114 Sum_probs=72.1
Q ss_pred HHHHHhhcCCCChhhHhHHHHHhhCCChhhhHH--HHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHH
Q 003201 102 INFLQRDCKDEDPMIRGLALRSLCSLRVANLVE--YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (840)
Q Consensus 102 iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e--~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L 179 (840)
.+.+.+-+.++|..+|-.|++.+..+-...++. ..+|.+..+..|++++||++|.-..-.++.++|+.+. ..+.+-+
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~-~~~~~gi 88 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE-SRYSEGI 88 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH-HHHHHHH
Confidence 345666788999999999999999875444433 3577888899999999999999999999999998873 2333322
Q ss_pred HH------HHhcCCChhH---HHHHHHHHHHHHh
Q 003201 180 KH------LMLNDPDPQV---VANCLSALQEIWS 204 (840)
Q Consensus 180 ~~------lLL~D~d~~V---v~~al~~L~eI~~ 204 (840)
+. .+-.|..... ..+.+..++++.+
T Consensus 89 ~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~ 122 (187)
T PF12830_consen 89 RLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR 122 (187)
T ss_pred HHHHHHHHHhcCCccccccccchHHHHHHHHHHh
Confidence 21 1122333222 5566677777765
No 102
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=92.75 E-value=1.4 Score=50.22 Aligned_cols=155 Identities=19% Similarity=0.250 Sum_probs=99.6
Q ss_pred cHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccc--hhhhh----hhhccC-CCcchHHHHHHHHHHhccC
Q 003201 21 EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSA--VFGEM----VMCSAT-SDIVLKKMCYLYVGNYAKV 93 (840)
Q Consensus 21 Ei~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG~DvS~--lF~~V----i~l~~S-~d~~~KkL~YLyl~~~~~~ 93 (840)
.+.-++..|.+..++ ..-+.+++++..++-++.-|--.-| .|.++ ++.+.. .+...|+++.=.+.-..+.
T Consensus 284 ~~~~v~~~l~~~~g~---e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~ 360 (516)
T KOG2956|consen 284 QSALVADLLKEISGS---ERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTN 360 (516)
T ss_pred hhHHHHHHHHhccCc---cchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHh
Confidence 355566666664333 2236889999999999988854434 36665 345554 8899999999888888777
Q ss_pred CCch----HHHHHHHHHhhcCCCChhhHhHH----HHHhhC-------------------------------C----Chh
Q 003201 94 NPDL----ALLTINFLQRDCKDEDPMIRGLA----LRSLCS-------------------------------L----RVA 130 (840)
Q Consensus 94 ~~dl----~lL~iNtl~KDl~~~Np~ir~LA----Lr~l~~-------------------------------I----~~~ 130 (840)
+|.- +-++|-.+..--.|+++-+.+.| ++++++ + ..+
T Consensus 361 Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~E 440 (516)
T KOG2956|consen 361 QPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAE 440 (516)
T ss_pred chHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHH
Confidence 7643 44666666655555554333322 333333 2 112
Q ss_pred ---hhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHH
Q 003201 131 ---NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHL 182 (840)
Q Consensus 131 ---~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~l 182 (840)
.++..+.|.+.++..+.+.-|||+|+.|+.-||..-. ..++-+.|..|
T Consensus 441 eL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG----~~~mePhL~~L 491 (516)
T KOG2956|consen 441 ELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVG----MEEMEPHLEQL 491 (516)
T ss_pred HHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHh----HHhhhhHhhhc
Confidence 3566777888888888888888888888888887633 13345556553
No 103
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.66 E-value=6.7 Score=51.62 Aligned_cols=223 Identities=18% Similarity=0.122 Sum_probs=122.9
Q ss_pred HHHHHHHHHhhcCCCChhhHhHHHHHhhCC----Chh-hhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccC
Q 003201 98 ALLTINFLQRDCKDEDPMIRGLALRSLCSL----RVA-NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCID 172 (840)
Q Consensus 98 ~lL~iNtl~KDl~~~Np~ir~LALr~l~~I----~~~-~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~ 172 (840)
--++.--+..++..+||..|+-|-.+++.+ ..+ -+.+..-..++++-+-.+|+-|---.+++..+++........
T Consensus 874 ~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 874 RSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 335666677888999999999988888775 222 233333334444444455666666677777777765555433
Q ss_pred CCchH---HHHHHHhcCCCh-hHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHH
Q 003201 173 ADFPP---TLKHLMLNDPDP-QVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELV 248 (840)
Q Consensus 173 ~~~~~---~L~~lLL~D~d~-~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL 248 (840)
+.+.. .+..+ -.|+.+ .|...++.++.-|....+..+ +.++- + ...|+..+.-..|-..+.+.+..
T Consensus 954 qhl~t~v~illal-~~Ds~~p~VqtwSL~al~~i~~s~~p~~-------~~~ve-~-tlsl~~~lLls~p~~~~ev~q~~ 1023 (2067)
T KOG1822|consen 954 QHLNTSVSILLAL-ATDSTSPVVQTWSLHALALILDSSGPMF-------RVLVE-P-TLSLCLKLLLSVPTSHVEVHQCY 1023 (2067)
T ss_pred hhcccHHHHHHHH-hhcCCCchhhhhHHHHHHHHHcCCCcee-------hhhHH-H-HHHHHHHHcCCCCcchhhhhhhh
Confidence 33433 67776 467655 888999999998875433221 11111 1 11222223333444555555555
Q ss_pred HhcCCCChhHH------------------HH-HHH----HHHHHhccCChHHHHHHHHHHHhccCCCch-hHHHHHHHHH
Q 003201 249 AKYVPLDSNEI------------------FD-IMN----LLEDRLQHANGAVVLSTIKVFLHLTLSMTD-VHQQVYERIK 304 (840)
Q Consensus 249 ~~y~p~~~~e~------------------~~-il~----~l~~~L~~~n~aVvleaik~il~l~~~~~~-~~~~~l~rl~ 304 (840)
.+..-.+..+. .. +-. ...-.+.|.++-|.-++++++-++....+. +. ++.++
T Consensus 1024 ~R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV 1100 (2067)
T KOG1822|consen 1024 NRCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLV 1100 (2067)
T ss_pred ccccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHH
Confidence 54332111111 00 000 011134566778889999998776433221 11 23456
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhhC
Q 003201 305 APLLTLVSSGSPEQSYAVLSHLHILVMRA 333 (840)
Q Consensus 305 ~~L~~lLss~~~nirY~aL~~l~~l~~~~ 333 (840)
..|..+|+++.--+|-..+..+.++++|.
T Consensus 1101 ~~L~~~l~s~~~i~r~~~~~clrql~~Re 1129 (2067)
T KOG1822|consen 1101 LQLCSLLSSSYLILRRASFSCLRQLVQRE 1129 (2067)
T ss_pred HHHHHHhcchhhhhhhhHHhhhhHHhHHH
Confidence 66777777654444444555666666654
No 104
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=92.51 E-value=6.8 Score=48.21 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=77.1
Q ss_pred HHHHHHhhcC-CCChhhHhHHHHHhhCC----ChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcc-cCCC
Q 003201 101 TINFLQRDCK-DEDPMIRGLALRSLCSL----RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC-IDAD 174 (840)
Q Consensus 101 ~iNtl~KDl~-~~Np~ir~LALr~l~~I----~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~-~~~~ 174 (840)
++-.+.+-++ |.-.-++--|++.+.++ ....+.+.+.-.++.+++|+-.-|||+++-++.++....|-.+ ....
T Consensus 577 V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~ 656 (1529)
T KOG0413|consen 577 VVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSK 656 (1529)
T ss_pred HHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHH
Confidence 3334444444 33334555666666654 2356777777778888999999999999999999999999876 3467
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 003201 175 FPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (840)
Q Consensus 175 ~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~ 204 (840)
|+-.|..+ ++|.+..|...|..++.....
T Consensus 657 wl~~li~~-~~d~es~v~e~a~~~i~k~l~ 685 (1529)
T KOG0413|consen 657 WLHTLISM-LNDTESDVTEHARKLIMKVLT 685 (1529)
T ss_pred HHHHHHHH-HhccHHHHHHHHHHHHHHHHh
Confidence 88889886 799999999999988877653
No 105
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.49 E-value=1.2 Score=53.46 Aligned_cols=96 Identities=19% Similarity=0.217 Sum_probs=74.1
Q ss_pred HHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHH
Q 003201 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (840)
Q Consensus 101 ~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~ 180 (840)
..+.+.+..+..+...+-++|++||+++.+..+..+.+.+. +-...++++|..|+.|+-++-..+|+.+ .+.+.
T Consensus 447 l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v-----~~~l~ 520 (574)
T smart00638 447 LHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKV-----QEVLL 520 (574)
T ss_pred HHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHH-----HHHHH
Confidence 34444455556677888999999999999999999888876 3355678999999999999988888876 34444
Q ss_pred HHHh-cCCChhHHHHHHHHHHHH
Q 003201 181 HLML-NDPDPQVVANCLSALQEI 202 (840)
Q Consensus 181 ~lLL-~D~d~~Vv~~al~~L~eI 202 (840)
.... .+.++-|..+|+.+|.+.
T Consensus 521 ~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 521 PIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred HHHcCCCCChHHHHHHHHHHHhc
Confidence 5432 357888999998888775
No 106
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.39 E-value=2.4 Score=50.29 Aligned_cols=139 Identities=20% Similarity=0.218 Sum_probs=93.9
Q ss_pred HHHHHHHHhhcCCCChhhHhHHHHHhhC---CChhh--------hHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcC
Q 003201 99 LLTINFLQRDCKDEDPMIRGLALRSLCS---LRVAN--------LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISA 167 (840)
Q Consensus 99 lL~iNtl~KDl~~~Np~ir~LALr~l~~---I~~~~--------i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p 167 (840)
.|.-..+-+-|+-+|-.+|..|+..+-. |+.|+ +++.-...+.++|.|+-|-||..|+.++.|++..+=
T Consensus 173 rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW 252 (1005)
T KOG1949|consen 173 RLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFW 252 (1005)
T ss_pred HHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 3677788899999999999999887765 34443 466677888999999999999999999999887654
Q ss_pred CcccC---CCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHh----hccCChhH
Q 003201 168 PTCID---ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNR----IKEFSEWA 240 (840)
Q Consensus 168 ~~~~~---~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~----l~~~~~W~ 240 (840)
+.+.. .++...+.+-|-.|+-..|..+.+.-|.+|.. +|. | .+++..+|.+ +.+.++-.
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~-np~-----s--------h~~le~~Lpal~~~l~D~se~V 318 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD-NPL-----S--------HPLLEQLLPALRYSLHDNSEKV 318 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-Ccc-----c--------hhHHHHHHHhcchhhhccchhH
Confidence 44321 12222333333457777888888888888864 331 1 1234444443 34556666
Q ss_pred HHHHHHHHHhc
Q 003201 241 QCLVLELVAKY 251 (840)
Q Consensus 241 Qi~iL~lL~~y 251 (840)
.+...++|.+.
T Consensus 319 RvA~vd~ll~i 329 (1005)
T KOG1949|consen 319 RVAFVDMLLKI 329 (1005)
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 107
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.27 E-value=0.63 Score=41.80 Aligned_cols=70 Identities=19% Similarity=0.130 Sum_probs=54.3
Q ss_pred HHHHHhccCCCChHHHHHHHHHHHHHHhhcC-CcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Q 003201 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISA-PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (840)
Q Consensus 137 ~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p-~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~ 207 (840)
+..+..-+.|+.+.||--|..-+.++.+... .....+.....+... +.|+|+-|-.||+..|..++...|
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~-L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQ-LKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHCh
Confidence 4455667899999999999999999998766 322224455666665 799999999999999999986544
No 108
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=91.62 E-value=3.5 Score=41.90 Aligned_cols=155 Identities=24% Similarity=0.242 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHhh-c------------CCcc-cCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHH
Q 003201 151 VRTVAVIGVLKLYHI-S------------APTC-IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRE 216 (840)
Q Consensus 151 VRK~Aala~~kl~~~-~------------p~~~-~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~ 216 (840)
||-.|+.|+.-+.+. + |+.. ........|..+++.|+++.|..+|+.++..+....
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs---------- 71 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS---------- 71 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc----------
Confidence 566676666666665 3 3330 011222334455689999999999999999987531
Q ss_pred HHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHH---HHHHHHhcc-CChHHHHHHHHHHHhc---c
Q 003201 217 REALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIM---NLLEDRLQH-ANGAVVLSTIKVFLHL---T 289 (840)
Q Consensus 217 ~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il---~~l~~~L~~-~n~aVvleaik~il~l---~ 289 (840)
++.+.. -..-. .++ ..|.+-....+..++ ..+...|++ .++.++-++.|++-.+ +
T Consensus 72 ------k~~L~~-Ae~~~--~~~---------~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~t 133 (182)
T PF13251_consen 72 ------KPFLAQ-AEESK--GPS---------GSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQAT 133 (182)
T ss_pred ------HHHHHH-HHhcC--CCC---------CCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccC
Confidence 111111 00000 000 011121222222222 334444555 4667777777776554 3
Q ss_pred CCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCC
Q 003201 290 LSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP 334 (840)
Q Consensus 290 ~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p 334 (840)
++. .+...++.+++..+..++.++|++++-.+|-.+..++...|
T Consensus 134 PY~-rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 134 PYH-RLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred Chh-hcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 432 24456677777778888888999999999999988886654
No 109
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=91.45 E-value=1.3 Score=44.24 Aligned_cols=119 Identities=20% Similarity=0.213 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhC-CCcccccccEEE------EccCCCHHHHHHHHHHHHhccCCCCHH
Q 003201 300 YERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA-PFIFASDYKHFY------CQYNEPSYVKKLKLEMLTAVANESNTY 372 (840)
Q Consensus 300 l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~-p~~~~~~~~~f~------c~~~dp~~IK~~kLdiL~~L~n~~Nv~ 372 (840)
+.+.+.-+.++|+++++.-|+.|+..+..+++.. ++.|..|...++ ...++|..++..++..|..|
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l------- 95 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRL------- 95 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-------
Confidence 4456666788999999999999999999999887 667766554321 23456666666666555443
Q ss_pred HHHHHHHHhhhcCCHHHHHHH-HHHHHHHHhhcCChHHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcc
Q 003201 373 EIVTELCEYAANVDIPIARES-IRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWS 444 (840)
Q Consensus 373 ~Iv~EL~~y~~~~d~~~~~~~-i~aI~~la~k~~~~~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~ 444 (840)
..+++.- +++.|+. .-. ...++..++++++. .++...++..+..++..||...
T Consensus 96 ------~~~~~~~-p~l~Rei~tp~----------l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~ 149 (165)
T PF08167_consen 96 ------FDLIRGK-PTLTREIATPN----------LPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTF 149 (165)
T ss_pred ------HHHhcCC-CchHHHHhhcc----------HHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccc
Confidence 3343332 2233332 222 23456667777765 5788899999999999999754
No 110
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=91.28 E-value=0.077 Score=42.41 Aligned_cols=53 Identities=26% Similarity=0.216 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHhhcCCccc--CCCchHHHHHHHhcCCChhHHHHHHHHHHHH
Q 003201 149 SYVRTVAVIGVLKLYHISAPTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEI 202 (840)
Q Consensus 149 pyVRK~Aala~~kl~~~~p~~~~--~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI 202 (840)
|.||..|+.++..+-...++... .++.++.|..+ |+|+++.|..+|+.+|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~-L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPL-LQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHH-TTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHhcC
Confidence 67999999999876655554431 14456777776 6899999999999888643
No 111
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.26 E-value=11 Score=41.82 Aligned_cols=253 Identities=17% Similarity=0.144 Sum_probs=132.9
Q ss_pred hhhhhhhhccCCCcchHHHHHHHHHHh--ccCCCchHH--HHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhH------
Q 003201 64 VFGEMVMCSATSDIVLKKMCYLYVGNY--AKVNPDLAL--LTINFLQRDCKDEDPMIRGLALRSLCSLRVANLV------ 133 (840)
Q Consensus 64 lF~~Vi~l~~S~d~~~KkL~YLyl~~~--~~~~~dl~l--L~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~------ 133 (840)
....++++-.++|+..+|-.-=++.+. ..++-..++ =.+-.+..=+.+.|+.+|--+-.++++|.+..-.
T Consensus 168 aL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laq 247 (550)
T KOG4224|consen 168 ALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQ 247 (550)
T ss_pred chhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHh
Confidence 344455666666666665433333332 233322211 1133455567789999999999999999775432
Q ss_pred --HHHHHHHHhccCCCChHHHHHHHHHHHHHHhh--cCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCc
Q 003201 134 --EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI--SAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAST 209 (840)
Q Consensus 134 --e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~--~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~ 209 (840)
+-+++.+..++.|+++-|+--|.+|+-.+-.- |.--+.+.+-++.+.++ +.|+-.-.+.+.+..+..|.-+...
T Consensus 248 aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~L-lqs~~~plilasVaCIrnisihplN- 325 (550)
T KOG4224|consen 248 AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVEL-LQSPMGPLILASVACIRNISIHPLN- 325 (550)
T ss_pred cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHH-HhCcchhHHHHHHHHHhhcccccCc-
Confidence 23788889999999999999999998766431 11112356677888887 4554433444445555444332211
Q ss_pred chHHHHHHHhhc-cHHHHHHHHHhhc-cCChhHHHHHHHHHHhcCCCChhHHHHH-----HHHHHHHhccCChHHHHHHH
Q 003201 210 SEEASREREALI-SKPVIYYLLNRIK-EFSEWAQCLVLELVAKYVPLDSNEIFDI-----MNLLEDRLQHANGAVVLSTI 282 (840)
Q Consensus 210 ~~~~~~~~~~li-~~~~~~~Ll~~l~-~~~~W~Qi~iL~lL~~y~p~~~~e~~~i-----l~~l~~~L~~~n~aVvleai 282 (840)
..+| ....++-|.+.+. .-+|=.||.....|..+..+.......| ++.+..++....-+|.-+-.
T Consensus 326 --------e~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseis 397 (550)
T KOG4224|consen 326 --------EVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEIS 397 (550)
T ss_pred --------ccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHH
Confidence 0111 1112222333332 2356688888888887765443333222 34455555554445544433
Q ss_pred HHHHhccCCCchhHHHHHH-HHHHHHHHhhcCCCchhHHHHHHHHH
Q 003201 283 KVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLH 327 (840)
Q Consensus 283 k~il~l~~~~~~~~~~~l~-rl~~~L~~lLss~~~nirY~aL~~l~ 327 (840)
.||-.+.-+..+ +..+++ .+.+.|+-++.+.+.|+|=-+-..+.
T Consensus 398 ac~a~Lal~d~~-k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~ 442 (550)
T KOG4224|consen 398 ACIAQLALNDND-KEALLDSGIIPILIPWTGSESEEVRGNAAAALI 442 (550)
T ss_pred HHHHHHHhcccc-HHHHhhcCCcceeecccCccchhhcccHHHHHH
Confidence 444333322111 111111 23344444555555555544433333
No 112
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=91.01 E-value=26 Score=37.83 Aligned_cols=109 Identities=10% Similarity=0.137 Sum_probs=66.1
Q ss_pred HHhhc-CCCchhHHHHHHHHHHHHhhCCC---------cccccccEEE-EccCCCHHHHH--HHHHHHHhccC-CCCHHH
Q 003201 308 LTLVS-SGSPEQSYAVLSHLHILVMRAPF---------IFASDYKHFY-CQYNEPSYVKK--LKLEMLTAVAN-ESNTYE 373 (840)
Q Consensus 308 ~~lLs-s~~~nirY~aL~~l~~l~~~~p~---------~~~~~~~~f~-c~~~dp~~IK~--~kLdiL~~L~n-~~Nv~~ 373 (840)
+.++. .+||.-=-++.+.+..+++..+- ++..|+.+=| -..|||.-|.+ +|..+.-.|+. +.=...
T Consensus 129 i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~ 208 (262)
T PF14500_consen 129 IQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPF 208 (262)
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHH
Confidence 33443 46777667777777777777652 1122222212 23567744444 44455555654 434456
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCC--hHHHHHHHHH
Q 003201 374 IVTELCEYAANVDIPIARESIRAVGKIALQQYD--VNAIVDRLLQ 416 (840)
Q Consensus 374 Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~--~~~~v~~Ll~ 416 (840)
.+.-|++=+.+.....+.++.+.+..|+.+|+. ...++..+.+
T Consensus 209 ~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~ 253 (262)
T PF14500_consen 209 AFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWN 253 (262)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 677777777777888999999999999999963 2344444443
No 113
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.75 E-value=37 Score=39.17 Aligned_cols=298 Identities=15% Similarity=0.196 Sum_probs=148.6
Q ss_pred CcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcC--CCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHH
Q 003201 76 DIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCK--DEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRT 153 (840)
Q Consensus 76 d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~--~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK 153 (840)
...-|.++-+...-+-..+.++.++++..++| |+ +.|..+-+ .-.++.-+.++....+|-.||
T Consensus 299 KMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkK-LSIf~eNK~~M~--------------~~~iveKL~klfp~~h~dL~~ 363 (791)
T KOG1222|consen 299 KMRRKNIVAMLVKALDRSNSSLLTLVIKFLKK-LSIFDENKIVME--------------QNGIVEKLLKLFPIQHPDLRK 363 (791)
T ss_pred HHHHHhHHHHHHHHHcccchHHHHHHHHHHHH-hhhhccchHHHH--------------hccHHHHHHHhcCCCCHHHHH
Confidence 34567889999999989999997777655544 43 33432211 123445567778888999999
Q ss_pred HHHHHHHHHHh---hcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHH
Q 003201 154 VAVIGVLKLYH---ISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLL 230 (840)
Q Consensus 154 ~Aala~~kl~~---~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll 230 (840)
..++-+..+-- .-|.. ...++++.+..+|-+|.-.++ |+..|+.+.- .++. ..+
T Consensus 364 ~tl~LlfNlSFD~glr~KM-v~~GllP~l~~ll~~d~~~~i---A~~~lYh~S~----------dD~~--------K~M- 420 (791)
T KOG1222|consen 364 ATLMLLFNLSFDSGLRPKM-VNGGLLPHLASLLDSDTKHGI---ALNMLYHLSC----------DDDA--------KAM- 420 (791)
T ss_pred HHHHHhhhccccccccHHH-hhccchHHHHHHhCCcccchh---hhhhhhhhcc----------CcHH--------HHH-
Confidence 88776665431 11222 357889999988434444454 4445555531 1111 011
Q ss_pred HhhccCChhHHHHHHHHHHhcC--CCChhHHHHHHHHHH-HHhccCChHHHHHHHH--HHHhccCCCchhHHHHHHHHHH
Q 003201 231 NRIKEFSEWAQCLVLELVAKYV--PLDSNEIFDIMNLLE-DRLQHANGAVVLSTIK--VFLHLTLSMTDVHQQVYERIKA 305 (840)
Q Consensus 231 ~~l~~~~~W~Qi~iL~lL~~y~--p~~~~e~~~il~~l~-~~L~~~n~aVvleaik--~il~l~~~~~~~~~~~l~rl~~ 305 (840)
+.+.-.++++..-. -.+.+--.+++..+. -.+...|.-.+.|.-. .++.......+. ++-
T Consensus 421 --------fayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~---lLm---- 485 (791)
T KOG1222|consen 421 --------FAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDL---LLM---- 485 (791)
T ss_pred --------HHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccch---HHH----
Confidence 12223333332211 111111122222211 1222233222211111 111111000000 000
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhhCCCcccccccEEEEccCCCHHHHHHHHHHHHhcc-CCCCHHHHHHH--HHHhh
Q 003201 306 PLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVA-NESNTYEIVTE--LCEYA 382 (840)
Q Consensus 306 ~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L~-n~~Nv~~Iv~E--L~~y~ 382 (840)
.+++-++.-+.-++-.-++.+..++... ..+++.+.-.+-|-+|-.|+ .+--+..|+.+ |.-|+
T Consensus 486 K~vRniSqHeg~tqn~FidyvgdLa~i~-------------~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~ 552 (791)
T KOG1222|consen 486 KVVRNISQHEGATQNMFIDYVGDLAGIA-------------KNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWM 552 (791)
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHh-------------hcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHH
Confidence 0122233333333444444444443321 12334444455555555554 33456666664 33454
Q ss_pred hc-----C-CHHHHHHHHHHHHHHHhhcCC-----hHHHHHHHHHHhhhcC--chhhHHHHHHHHHHHhh
Q 003201 383 AN-----V-DIPIARESIRAVGKIALQQYD-----VNAIVDRLLQFLEMEK--DYVTAEALVLVKDLLRK 439 (840)
Q Consensus 383 ~~-----~-d~~~~~~~i~aI~~la~k~~~-----~~~~v~~Ll~LL~~~~--~~v~~e~v~~i~~il~~ 439 (840)
++ . ..+++-+.|.++|.+|..... ....|+++++||.... +.++-+++.|+.++++.
T Consensus 553 k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H 622 (791)
T KOG1222|consen 553 KTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH 622 (791)
T ss_pred HHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 43 2 356889999999998876432 1358999999998654 45666777788887764
No 114
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.10 E-value=51 Score=39.85 Aligned_cols=144 Identities=24% Similarity=0.227 Sum_probs=87.4
Q ss_pred HHhcCC--Cccchhhhhhh-hc---cCCCcchHHHHHHH-HHHhccC---CCchHHHHHHHHHhhcCCCChhhHhHHHHH
Q 003201 54 YMTIGI--DVSAVFGEMVM-CS---ATSDIVLKKMCYLY-VGNYAKV---NPDLALLTINFLQRDCKDEDPMIRGLALRS 123 (840)
Q Consensus 54 ~m~lG~--DvS~lF~~Vi~-l~---~S~d~~~KkL~YLy-l~~~~~~---~~dl~lL~iNtl~KDl~~~Np~ir~LALr~ 123 (840)
+|++|+ ..+.-|-++++ .+ .-+....|-+-+++ ...+.+. ..|+.--..-.+.|-..+++--+|=..+.-
T Consensus 29 ~~em~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqi 108 (892)
T KOG2025|consen 29 VMEMLTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQI 108 (892)
T ss_pred HHHhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHH
Confidence 455554 33334666665 11 23334444444443 2222221 223333344566677777777776544444
Q ss_pred hhCC------ChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHH
Q 003201 124 LCSL------RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLS 197 (840)
Q Consensus 124 l~~I------~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~ 197 (840)
++.+ ...++..-+...+..-+.|..|.||.-|+.|+.|+-.. |.. .+-...+.+..++-+|+++-|..+|+.
T Consensus 109 la~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d-~~d-ee~~v~n~l~~liqnDpS~EVRRaaLs 186 (892)
T KOG2025|consen 109 LALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGD-PKD-EECPVVNLLKDLIQNDPSDEVRRAALS 186 (892)
T ss_pred HHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC-CCC-CcccHHHHHHHHHhcCCcHHHHHHHHH
Confidence 4433 33567777777778888999999999999999988642 211 113456778888778999999998865
Q ss_pred HH
Q 003201 198 AL 199 (840)
Q Consensus 198 ~L 199 (840)
-+
T Consensus 187 nI 188 (892)
T KOG2025|consen 187 NI 188 (892)
T ss_pred hh
Confidence 43
No 115
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.67 E-value=3.7 Score=45.45 Aligned_cols=140 Identities=19% Similarity=0.252 Sum_probs=93.7
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHHHhhcCChH------HHHHHHHHHhhhcC-chhhHHHHHHHHHHHhhCCCcchhH---
Q 003201 378 LCEYAANVDIPIARESIRAVGKIALQQYDVN------AIVDRLLQFLEMEK-DYVTAEALVLVKDLLRKYPQWSHDC--- 447 (840)
Q Consensus 378 L~~y~~~~d~~~~~~~i~aI~~la~k~~~~~------~~v~~Ll~LL~~~~-~~v~~e~v~~i~~il~~~p~~~~~~--- 447 (840)
++.|+.+.|.++|..+.+-||.|+.+.|.+. .....|+..++... .++...+...+..++|++|.-+...
T Consensus 129 ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~ 208 (342)
T KOG2160|consen 129 LLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKL 208 (342)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhc
Confidence 3459999999999999999999999998642 24567788777544 5787889999999999998654322
Q ss_pred --HHHHHhhhcccCCchHHHHHHHHHHcCcCCCCCC-----hHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCC
Q 003201 448 --IAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD-----APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRP 517 (840)
Q Consensus 448 --~~~l~~l~~~~i~~~~ak~a~iwilGEy~~~i~~-----~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p 517 (840)
...|..++...-++...+..++.+++-+-..-.. .+..+.....++...-..+++...+++..++....+
T Consensus 209 ~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 209 NGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred CCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 2234444444446778888888888876432211 222333444444433236678888887777655443
No 116
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=89.48 E-value=0.73 Score=47.55 Aligned_cols=130 Identities=17% Similarity=0.106 Sum_probs=85.4
Q ss_pred hhhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCC-Ch-hhHhHHHHHhhCCChhhhHHHHHHHHHhccC
Q 003201 68 MVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDE-DP-MIRGLALRSLCSLRVANLVEYLVGPLGLGLK 145 (840)
Q Consensus 68 Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~-Np-~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~ 145 (840)
+..+..+...+.|-++++++....+...+- .+..+.+-+.+- |- .+=++|-+.++.+.... +.+.+.+.+-+.
T Consensus 56 ~~~L~~~~~~E~~~la~~il~~~~~~~~~~---~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~--~~~~~~~~~W~~ 130 (213)
T PF08713_consen 56 ADELWESGYREERYLALLILDKRRKKLTEE---DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH--PEALELLEKWAK 130 (213)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCGGG--HH---HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH--GGHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHhHHHhhhhhHH---HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh--HHHHHHHHHHHh
Confidence 345778888888888888887665433222 344444444432 32 34456666666553322 456667778889
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Q 003201 146 DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (840)
Q Consensus 146 d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~ 207 (840)
|+++++||.|+.+.++.++. +.. ..+.+.+..+ +.|++..|.-+.--+|.++..++|
T Consensus 131 s~~~w~rR~~~v~~~~~~~~--~~~--~~~l~~~~~~-~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 131 SDNEWVRRAAIVMLLRYIRK--EDF--DELLEIIEAL-LKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp CSSHHHHHHHHHCTTTHGGG--CHH--HHHHHHHHHC-TTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred CCcHHHHHHHHHHHHHHHHh--cCH--HHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHhCH
Confidence 99999999999999887776 222 3455566665 689999999888889999987655
No 117
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=88.90 E-value=18 Score=39.58 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=46.7
Q ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhh
Q 003201 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (840)
Q Consensus 136 l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~ 205 (840)
+..-|..++.++++.||+.|+-|+.-+.-.+++.. .+.+..+...+ ...+..|...|+.++.++.-.
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a--~~~l~l~~~~~-~~~~~~v~~~al~~l~Dll~~ 94 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA--KEHLPLFLQAL-QKDDEEVKITALKALFDLLLT 94 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH--HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHH
Confidence 33445567777888888888888887777777666 45566666653 444777888888888877643
No 118
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=88.61 E-value=10 Score=46.67 Aligned_cols=257 Identities=14% Similarity=0.077 Sum_probs=157.6
Q ss_pred ccchhhhhhhhccCCCcchHHHHHHHHHHhccCC--CchHHHHHHHHHhhcCCCChhhHhHHH-------HHhhCCChhh
Q 003201 61 VSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVN--PDLALLTINFLQRDCKDEDPMIRGLAL-------RSLCSLRVAN 131 (840)
Q Consensus 61 vS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~--~dl~lL~iNtl~KDl~~~Np~ir~LAL-------r~l~~I~~~~ 131 (840)
.+..++.+-.++..++...|..-=.........- +...-...--+..-++|..|.+|..-+ ..++.++..-
T Consensus 396 ~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~ 475 (759)
T KOG0211|consen 396 DSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGIST 475 (759)
T ss_pred hhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchh
Confidence 3445666666777777666654333333322111 111111111222334455566665444 5556677788
Q ss_pred hHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcch
Q 003201 132 LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSE 211 (840)
Q Consensus 132 i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~ 211 (840)
..+.+.+.+...-.|.+.-||.+..-.+..+....-..+.++.+.+.+... +.|....+.-+|..-+..+...-+..
T Consensus 476 ~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~-l~d~v~~Ir~~aa~~l~~l~~~~G~~-- 552 (759)
T KOG0211|consen 476 VSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTW-LPDHVYSIREAAARNLPALVETFGSE-- 552 (759)
T ss_pred hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhh-hhhhHHHHHHHHHHHhHHHHHHhCcc--
Confidence 888999999998889888898887777666554333233334444555444 45666777777777777766543321
Q ss_pred HHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhcc
Q 003201 212 EASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL--DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLT 289 (840)
Q Consensus 212 ~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~--~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~ 289 (840)
|. . ...+++++....+.+=|....++..+..+.+- .+--..+++..+..+.....+-|-+.++|.+-.+-
T Consensus 553 ------w~-~-~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 553 ------WA-R-LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKIL 624 (759)
T ss_pred ------hh-H-HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHH
Confidence 11 1 12577888877776777788888877766443 22334667888888888888899999999876654
Q ss_pred CCCchhHHHHH-HHHHHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 003201 290 LSMTDVHQQVY-ERIKAPLLTLVSSGSPEQSYAVLSHLHILVM 331 (840)
Q Consensus 290 ~~~~~~~~~~l-~rl~~~L~~lLss~~~nirY~aL~~l~~l~~ 331 (840)
+.... .+. +.+.+.+.+|-.+.+.|+||.+..+...+..
T Consensus 625 ~~L~~---~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 625 KLLDE---SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred hhcch---HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 43211 112 2345556677778899999999998877754
No 119
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.13 E-value=8.4 Score=42.72 Aligned_cols=108 Identities=13% Similarity=0.051 Sum_probs=71.7
Q ss_pred HHhccCCCChHHHHHHHHHHHHHHhhcCCcc---cCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHH
Q 003201 140 LGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRE 216 (840)
Q Consensus 140 v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~---~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~ 216 (840)
+...+.++++-||..|+-.+..+.+-+|... .+.++...|...+-.|.+-.|...|+.+++-+.++++.. .+
T Consensus 129 ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g-----~~ 203 (342)
T KOG2160|consen 129 LLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPG-----QD 203 (342)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHH-----HH
Confidence 3447889999999999999999999998643 356677888777555666678899999998887765421 11
Q ss_pred HHhhccHHHHHHHHHhhcc--CChhHHHHHHHHHHhcCCC
Q 003201 217 REALISKPVIYYLLNRIKE--FSEWAQCLVLELVAKYVPL 254 (840)
Q Consensus 217 ~~~li~~~~~~~Ll~~l~~--~~~W~Qi~iL~lL~~y~p~ 254 (840)
.+..++- +.-|.+.+.. -+.=.|.+++-++..+.-.
T Consensus 204 ~fl~~~G--~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 204 EFLKLNG--YQVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred HHHhcCC--HHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 1122221 3333444433 5666777777777766543
No 120
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.04 E-value=1e+02 Score=40.57 Aligned_cols=269 Identities=15% Similarity=0.167 Sum_probs=145.9
Q ss_pred CCCCcHHHHHHHHHhhhcCCCC----------------CChHHHHHHHHHHHHHHhcCCCcc-------chhhh-hhh--
Q 003201 17 SGKGEVSDLKSQLRQLAGSRAP----------------GIDDSKRELFKKVISYMTIGIDVS-------AVFGE-MVM-- 70 (840)
Q Consensus 17 ~~k~Ei~elr~~L~~~~~~~~~----------------~~~~~kk~~lkKlI~~m~lG~DvS-------~lF~~-Vi~-- 70 (840)
.++.-..||...|....+.++. ++...|+..+.-++--.|-|+-.. .+|-+ ++.
T Consensus 854 ~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~T 933 (1702)
T KOG0915|consen 854 EVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKT 933 (1702)
T ss_pred hhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCC
Confidence 3444556666666665544443 344578888888888877786221 12211 110
Q ss_pred ------------hccCCCcchHHHHHHHHHHhccCCC----c------hHHHHHHHHHhh--------------cCCCCh
Q 003201 71 ------------CSATSDIVLKKMCYLYVGNYAKVNP----D------LALLTINFLQRD--------------CKDEDP 114 (840)
Q Consensus 71 ------------l~~S~d~~~KkL~YLyl~~~~~~~~----d------l~lL~iNtl~KD--------------l~~~Np 114 (840)
|-=.+|+.+=-|+|=|+. +|+.|. - +-.++.++..|+ =-|||+
T Consensus 934 p~Gg~isTYKELc~LASdl~qPdLVYKFM~-LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~ 1012 (1702)
T KOG0915|consen 934 PDGGKISTYKELCNLASDLGQPDLVYKFMQ-LANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDK 1012 (1702)
T ss_pred CCCCcchHHHHHHHHHhhcCChHHHHHHHH-HhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcH
Confidence 101124444455555543 222211 1 223444444443 358888
Q ss_pred hhHhH------HHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCC
Q 003201 115 MIRGL------ALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPD 188 (840)
Q Consensus 115 ~ir~L------ALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d 188 (840)
-|+.. ||-+=++-.+.+....+..++...|.++-..||-.+++|+.-+.+-.|.. ++.+++.
T Consensus 1013 ~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~----~~~e~lp-------- 1080 (1702)
T KOG0915|consen 1013 KVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFD----QVKEKLP-------- 1080 (1702)
T ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChH----HHHHHHH--------
Confidence 88752 22222223445667777888888899999999999999999999875542 2233332
Q ss_pred hhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 003201 189 PQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLED 268 (840)
Q Consensus 189 ~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~ 268 (840)
-.--.++.+.-+|.+. .++...... ..+.+||-++-+ +.+......++..+.|
T Consensus 1081 -elw~~~fRvmDDIKEs--------VR~aa~~~~-~~lsKl~vr~~d-----------------~~~~~~~~~~l~~iLP 1133 (1702)
T KOG0915|consen 1081 -ELWEAAFRVMDDIKES--------VREAADKAA-RALSKLCVRICD-----------------VTNGAKGKEALDIILP 1133 (1702)
T ss_pred -HHHHHHHHHHHHHHHH--------HHHHHHHHH-HHHHHHHhhhcc-----------------cCCcccHHHHHHHHHH
Confidence 2344556666665321 111101000 122333322211 2344455667777777
Q ss_pred Hhc-----cCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCC-chhHHHHHHH
Q 003201 269 RLQ-----HANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGS-PEQSYAVLSH 325 (840)
Q Consensus 269 ~L~-----~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~-~nirY~aL~~ 325 (840)
.|- |.=..|.--++++++.+..+....-.-.+.++.+.|++..+.-+ .-+-|++++.
T Consensus 1134 fLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~ 1196 (1702)
T KOG0915|consen 1134 FLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL 1196 (1702)
T ss_pred HHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh
Confidence 653 33467888889999988765432111123456777777776543 4457888877
No 121
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.74 E-value=5.4 Score=47.55 Aligned_cols=150 Identities=23% Similarity=0.264 Sum_probs=100.2
Q ss_pred ChhhhHHHH-HHHHHhccCCCChHHHHHHHHHHHHHHhh-cCCccc--CC----CchHHHHHHHhcCCChhHHHHHHHHH
Q 003201 128 RVANLVEYL-VGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SAPTCI--DA----DFPPTLKHLMLNDPDPQVVANCLSAL 199 (840)
Q Consensus 128 ~~~~i~e~l-~~~v~~~L~d~~pyVRK~Aala~~kl~~~-~p~~~~--~~----~~~~~L~~lLL~D~d~~Vv~~al~~L 199 (840)
++++|.-.+ -|.+-++|.-+|..||..|+.-+..+|-+ +|+.-. .. .=...+++| |.|+=|+|.+-|+--+
T Consensus 166 gVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~L-L~d~~p~VRS~a~~gv 244 (1005)
T KOG1949|consen 166 GVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSL-LEDPYPMVRSTAILGV 244 (1005)
T ss_pred hHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHH-hcCCCchHHHHHHHHH
Confidence 455665444 55678999999999999999999999965 676521 01 113457787 7999999999887777
Q ss_pred HHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhcc-----CChhHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHhcc
Q 003201 200 QEIWSLEASTSEEASREREALISKPVIYYLLNRIKE-----FSEWAQCLVLELVAKY--VPLDSNEIFDIMNLLEDRLQH 272 (840)
Q Consensus 200 ~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~-----~~~W~Qi~iL~lL~~y--~p~~~~e~~~il~~l~~~L~~ 272 (840)
+.+.. ..|.+|.+.++..|+..+.+ ..-=..+.+.+-|... .|..-...+.++..+...|+.
T Consensus 245 ~k~~s-----------~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D 313 (1005)
T KOG1949|consen 245 CKITS-----------KFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHD 313 (1005)
T ss_pred HHHHH-----------HHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhc
Confidence 66642 45677877788888876532 1112345555555432 344433445566666677777
Q ss_pred CChHHHHHHHHHHHhcc
Q 003201 273 ANGAVVLSTIKVFLHLT 289 (840)
Q Consensus 273 ~n~aVvleaik~il~l~ 289 (840)
++..|..+++..++.+.
T Consensus 314 ~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 314 NSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred cchhHHHHHHHHHHHHH
Confidence 77888888888777653
No 122
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=86.25 E-value=24 Score=40.54 Aligned_cols=175 Identities=15% Similarity=0.230 Sum_probs=108.4
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCh-----HHHHHHHHHHhhhcC-chhhHHHHHHHHHHHhhCC-Ccch
Q 003201 373 EIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-----NAIVDRLLQFLEMEK-DYVTAEALVLVKDLLRKYP-QWSH 445 (840)
Q Consensus 373 ~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~-----~~~v~~Ll~LL~~~~-~~v~~e~v~~i~~il~~~p-~~~~ 445 (840)
..+..|.+-..+.|+.=|..+-.-+.++-.|+++. ..+.+++.+++.... -+.+.|++..+..|+..+. .+.+
T Consensus 133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~ 212 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKE 212 (409)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--H
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcH
Confidence 34555666667777766666666666777777653 235567777777543 3578899999999998754 2222
Q ss_pred hHHHHHHhhhc--ccC-CchHHHHHHHHHHcCcCCCCCC-hHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCCh-hH
Q 003201 446 DCIAVVGSISS--QNV-QEPKAKAALIWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPP-ET 520 (840)
Q Consensus 446 ~~~~~l~~l~~--~~i-~~~~ak~a~iwilGEy~~~i~~-~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~-e~ 520 (840)
.-...+.+.+. ... .-+.-...+..++..|.+.-+. +..+++.+++.|...+ +.-+...|.-+..+.-..|+ +.
T Consensus 213 eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~-s~Kev~FL~el~~il~~~~~~~f 291 (409)
T PF01603_consen 213 EHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTN-SQKEVLFLNELEEILEVLPPEEF 291 (409)
T ss_dssp HHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS--HHHHHHHHHHHHHHHTT--HHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCC-chhHHHHHHHHHHHHHhcCHHHH
Confidence 21122222221 111 1122245567777777654443 7889999999999888 88888899988888876664 33
Q ss_pred HHHHH---HHHHhhccCCChHHHhHHHHHHH
Q 003201 521 QKVLG---AALAAGLADFHQDVHDRALFYHR 548 (840)
Q Consensus 521 ~~~l~---~vL~~~~~d~d~dVrdRA~~Y~r 548 (840)
+.+.. +.+..|..|.+..|-+||..+|.
T Consensus 292 ~~i~~~lf~~la~ci~S~h~qVAErAl~~w~ 322 (409)
T PF01603_consen 292 QKIMVPLFKRLAKCISSPHFQVAERALYFWN 322 (409)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHC
Confidence 44444 44556788999999999998874
No 123
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=86.08 E-value=13 Score=37.34 Aligned_cols=148 Identities=16% Similarity=0.096 Sum_probs=82.8
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCc-hhhHHHHHHHHHH
Q 003201 358 KLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKD-YVTAEALVLVKDL 436 (840)
Q Consensus 358 kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~~~~v~~Ll~LL~~~~~-~v~~e~v~~i~~i 436 (840)
++.-+..=.++.|++.++++|.....+.+.+....++..|-..|..-|+.......+...+..... .+...++..+..-
T Consensus 3 ~v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~~~~~~~f~~~ll~~~~~~ 82 (209)
T PF02854_consen 3 KVRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLCAALNSRFPSEFRSLLLNRCQEE 82 (209)
T ss_dssp HHHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Confidence 444444434599999999999988877789999999999999998887654444455555554443 4555555544443
Q ss_pred HhhCCCcchhHHHHHHhhhcccCCchHHHHHHHHHHcCc-CCCCCC---hHHHHHHHHHhhcc--------CCcHHHHHH
Q 003201 437 LRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEY-SQDMQD---APYILESLTENWEE--------EPSAEVRLH 504 (840)
Q Consensus 437 l~~~p~~~~~~~~~l~~l~~~~i~~~~ak~a~iwilGEy-~~~i~~---~~~il~~l~~~~~~--------e~~~~vk~~ 504 (840)
+.... ... . ... .......-..+.+.++||- ...+-+ .-+++..++..... +. .+.=+.
T Consensus 83 f~~~~-~~~-~---~~~---~~~~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~~~~~~~~~~~~-ie~~~~ 153 (209)
T PF02854_consen 83 FEERY-SNE-E---LEE---NRQSSKQRRRGNIRFLAELFNFGVVSEKIIFDILRELLSDGTDECQPPPDEEN-IECLCT 153 (209)
T ss_dssp HHHHT--HH-H---HHH---HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTSHHCCHHTCHHH-HHHHHH
T ss_pred HHHhh-hhh-h---HHH---HHHHHHHHHhhhhhHHHhhHhhccccchhHHHHHHHHHhcccccccCCCcHhH-HHHHHH
Confidence 33211 000 0 000 0001122234567777873 333323 33455556655444 22 444455
Q ss_pred HHHHHhHHhh
Q 003201 505 LLTAVMKCFF 514 (840)
Q Consensus 505 lLta~~Kl~~ 514 (840)
+|..+.+.+.
T Consensus 154 lL~~~G~~l~ 163 (209)
T PF02854_consen 154 LLKTCGKKLE 163 (209)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5666666554
No 124
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=86.06 E-value=1e+02 Score=38.47 Aligned_cols=314 Identities=16% Similarity=0.194 Sum_probs=148.9
Q ss_pred ChhHHHHHHHHHHhcCCC---ChhHHHHHHHHHHHHh-ccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhc
Q 003201 237 SEWAQCLVLELVAKYVPL---DSNEIFDIMNLLEDRL-QHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVS 312 (840)
Q Consensus 237 ~~W~Qi~iL~lL~~y~p~---~~~e~~~il~~l~~~L-~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLs 312 (840)
.|.+--+++-.+.+|... ++.-...+++.....+ .+..+-+-..|++++..+.. +.+-...+..+...|..+.+
T Consensus 463 ~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L~qlas 540 (1005)
T KOG2274|consen 463 SPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDGLLQLAS 540 (1005)
T ss_pred CHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHHHHHHcc
Confidence 333333444445554322 3333344454443333 34556677888888877653 22222233445555667777
Q ss_pred CCCchhHHHHHHHHHHHHhhCCCcc-------cccccEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcC
Q 003201 313 SGSPEQSYAVLSHLHILVMRAPFIF-------ASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANV 385 (840)
Q Consensus 313 s~~~nirY~aL~~l~~l~~~~p~~~-------~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~ 385 (840)
..+.++--+..+.|...+.-.|+.- .+..-.+|.++.+|+||-....|+
T Consensus 541 ~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~------------------------ 596 (1005)
T KOG2274|consen 541 KSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDL------------------------ 596 (1005)
T ss_pred cccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHH------------------------
Confidence 6778888888888888888777521 111112244454444555554443
Q ss_pred CHHHHHHHHHHHHHHHhhcCCh-HHHHHHHHHHhhhcCch----hhHHHHHHHHHHHhhCCCc-ch----hHHHHHHhhh
Q 003201 386 DIPIARESIRAVGKIALQQYDV-NAIVDRLLQFLEMEKDY----VTAEALVLVKDLLRKYPQW-SH----DCIAVVGSIS 455 (840)
Q Consensus 386 d~~~~~~~i~aI~~la~k~~~~-~~~v~~Ll~LL~~~~~~----v~~e~v~~i~~il~~~p~~-~~----~~~~~l~~l~ 455 (840)
+..+...+.+|... +.++..++..+...++. ...-++.++.-++|+-|.- -. ++...+.++.
T Consensus 597 --------f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~t 668 (1005)
T KOG2274|consen 597 --------FEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKIT 668 (1005)
T ss_pred --------HHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhhe
Confidence 33333444444332 45666677766655421 2233344555566665532 11 1111222221
Q ss_pred ccc-----CC-chHHHHHHHHH----HcCcCCCC-CChHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCChhHHHHH
Q 003201 456 SQN-----VQ-EPKAKAALIWM----LGEYSQDM-QDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVL 524 (840)
Q Consensus 456 ~~~-----i~-~~~ak~a~iwi----lGEy~~~i-~~~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~~~~l 524 (840)
.++ ++ ..+..++.+.. +-+|...- .+--+++..+..-...+.|..+-+..=-.+.-|+.+.+.++.+.+
T Consensus 669 lHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~ 748 (1005)
T KOG2274|consen 669 LHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNL 748 (1005)
T ss_pred eecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhH
Confidence 111 11 12334444444 33332211 122233333222222222121222211223333444555666666
Q ss_pred HHHHHhhccC-CChH----HHhHHHHHHHHccCCHHHHHhhcCCCCCCccccccCCCHHHHHHHHHhh
Q 003201 525 GAALAAGLAD-FHQD----VHDRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEF 587 (840)
Q Consensus 525 ~~vL~~~~~d-~d~d----VrdRA~~Y~rLL~~~~~~a~~vv~~~~p~~~~~~~~~~~~~~~~l~~~~ 587 (840)
.++|..+..- ...| +|+--..+-.|.-.+++..-..+++ .|.+.. +.-=.=+.-+|.+++
T Consensus 749 d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~~~l~FL~S-lp~~~g--~~AlefVMteW~srq 813 (1005)
T KOG2274|consen 749 DQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLDQLLNFLSS-LPGPTG--EPALEFVMTEWTSRQ 813 (1005)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHHHHHHHHHh-CCCCCC--CcHHHHHHHHHHhhh
Confidence 6666665532 2334 6777777777777888777777776 343321 000012345566666
No 125
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=86.00 E-value=39 Score=38.39 Aligned_cols=207 Identities=16% Similarity=0.185 Sum_probs=131.5
Q ss_pred HhhcCCCchhHHHHHHHHHHHHhhCCC---cccccccEEEEc----cCCCHHHHHHHHHHHHhccCCC-CH----HHHHH
Q 003201 309 TLVSSGSPEQSYAVLSHLHILVMRAPF---IFASDYKHFYCQ----YNEPSYVKKLKLEMLTAVANES-NT----YEIVT 376 (840)
Q Consensus 309 ~lLss~~~nirY~aL~~l~~l~~~~p~---~~~~~~~~f~c~----~~dp~~IK~~kLdiL~~L~n~~-Nv----~~Iv~ 376 (840)
.+|+++ .++|-.|+|.+..++..... +.+.|+..|.++ .+....=|..+|.+..++.+-. +. ..|++
T Consensus 33 ~lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvr 111 (371)
T PF14664_consen 33 MLLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVR 111 (371)
T ss_pred HHCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHH
Confidence 356654 99999999999888765432 345567766533 3344556788888888876553 23 46788
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHHHhhcCCh-HH--HHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchhH-----H
Q 003201 377 ELCEYAANVDIPIARESIRAVGKIALQQYDV-NA--IVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDC-----I 448 (840)
Q Consensus 377 EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~-~~--~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~-----~ 448 (840)
-+..-+.+.|+.+++.++..++.++...|+. .+ -+.++++.+..+.-.+.+-++.++-.++ ..|+.|.+. +
T Consensus 112 alvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL 190 (371)
T PF14664_consen 112 ALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDL 190 (371)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccH
Confidence 8888888889999999999999999998863 22 3566776665533234555555666666 456554422 1
Q ss_pred H-HHHhhhcc---cC-Cch------HHHHHHHHHHcCcCCCCC---ChHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhh
Q 003201 449 A-VVGSISSQ---NV-QEP------KAKAALIWMLGEYSQDMQ---DAPYILESLTENWEEEPSAEVRLHLLTAVMKCFF 514 (840)
Q Consensus 449 ~-~l~~l~~~---~i-~~~------~ak~a~iwilGEy~~~i~---~~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~ 514 (840)
. ++.-+... .. ++. .++.+++-++--+...+- +.-.-++.+++.+.... +++|-.+|..+..+|-
T Consensus 191 ~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~-~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 191 ESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPN-PEIRKAILDLLFDLLR 269 (371)
T ss_pred HHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCC-HHHHHHHHHHHHHHHC
Confidence 1 11211110 01 111 134556667766665441 22256777888777766 8899999999888886
Q ss_pred cCCh
Q 003201 515 KRPP 518 (840)
Q Consensus 515 ~~p~ 518 (840)
..++
T Consensus 270 ik~p 273 (371)
T PF14664_consen 270 IKPP 273 (371)
T ss_pred CCCC
Confidence 5443
No 126
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=85.02 E-value=22 Score=35.68 Aligned_cols=138 Identities=18% Similarity=0.193 Sum_probs=74.7
Q ss_pred HHhccCCCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCC
Q 003201 362 LTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYP 441 (840)
Q Consensus 362 L~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p 441 (840)
+-+| +++|++.++.+|.+...+ +++.+..+++.|-..+...|....+.-.++..+......+..+++..+..-+++.
T Consensus 8 lnkL-s~~n~~~~~~~l~~~~~~-~~~~~~~l~~~i~~~~~~~~~~~~~ya~L~~~l~~~~~~f~~~ll~~~~~~f~~~- 84 (200)
T smart00543 8 INKL-SPSNFESIIKELLKLNNS-DKNLRKYILELIFEKAVEEPNFIPAYARLCALLNAKNPDFGSLLLERLQEEFEKG- 84 (200)
T ss_pred HhhC-CHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3344 478999999999977654 4678899999999999887764444445555554433334444444333333221
Q ss_pred CcchhHHHHHHhhhcccCCchHHHHHHHHHHcCc-CCCCCC---hHHHHHHHHHhhccC------CcHHHHHHHHHHHhH
Q 003201 442 QWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEY-SQDMQD---APYILESLTENWEEE------PSAEVRLHLLTAVMK 511 (840)
Q Consensus 442 ~~~~~~~~~l~~l~~~~i~~~~ak~a~iwilGEy-~~~i~~---~~~il~~l~~~~~~e------~~~~vk~~lLta~~K 511 (840)
+.. ..-.........+.++||- ...+-+ .-++++.+++..... ...++=+.+|..+.+
T Consensus 85 ---------~e~---~~~~~~~~~~~~i~fl~eL~~~~~i~~~~i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~~G~ 152 (200)
T smart00543 85 ---------LES---EEESDKQRRLGLVRFLGELYNFQVLTSKIILELLKELLNDLTKLDPPRSDFSVECLLSLLPTCGK 152 (200)
T ss_pred ---------HHH---HHHHhhhhHHhHHHHHHHHHHcccCcHHHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHHHhhH
Confidence 000 0001112334556777773 322222 234445555444331 125556666777777
Q ss_pred Hhh
Q 003201 512 CFF 514 (840)
Q Consensus 512 l~~ 514 (840)
.+.
T Consensus 153 ~l~ 155 (200)
T smart00543 153 DLE 155 (200)
T ss_pred HHc
Confidence 665
No 127
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=84.79 E-value=40 Score=40.83 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=11.2
Q ss_pred hcCCHHHHHHHHHHHHHHH
Q 003201 383 ANVDIPIARESIRAVGKIA 401 (840)
Q Consensus 383 ~~~d~~~~~~~i~aI~~la 401 (840)
...|.+-+...+++||.++
T Consensus 500 ~~~~~~~~~~~LkaLgN~g 518 (618)
T PF01347_consen 500 SRGDEEEKIVYLKALGNLG 518 (618)
T ss_dssp HTT-HHHHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHhhccC
Confidence 3445555666677777765
No 128
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=84.50 E-value=96 Score=36.87 Aligned_cols=250 Identities=22% Similarity=0.260 Sum_probs=127.2
Q ss_pred CCcchHHHHHHH-HHHh-ccCCCchHHHHH---HHHHhhcCCCChhhHhHHHHHhhCC----Ch--hhhHHHHHHHHHhc
Q 003201 75 SDIVLKKMCYLY-VGNY-AKVNPDLALLTI---NFLQRDCKDEDPMIRGLALRSLCSL----RV--ANLVEYLVGPLGLG 143 (840)
Q Consensus 75 ~d~~~KkL~YLy-l~~~-~~~~~dl~lL~i---Ntl~KDl~~~Np~ir~LALr~l~~I----~~--~~i~e~l~~~v~~~ 143 (840)
+.+..|-+-+|. ...| ...+||..-++- -.+.+-+.+++-.+|-..+.-++.+ +. ..+..-+..-+.+-
T Consensus 61 ~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R 140 (885)
T COG5218 61 PSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSER 140 (885)
T ss_pred CCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 344444444443 2233 345566444544 4455666777777775555544433 33 45666666777777
Q ss_pred cCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccC--cchHHHHHHHhhc
Q 003201 144 LKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS--TSEEASREREALI 221 (840)
Q Consensus 144 L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~--~~~~~~~~~~~li 221 (840)
+-|..+.||+-|+.|+.++-...-+- +......+...+-+|+..-|...|+.-+ +. .+.+ -..+.|++.....
T Consensus 141 ~~DRE~~VR~eAv~~L~~~Qe~~~ne--en~~~n~l~~~vqnDPS~EVRr~allni--~v-dnsT~p~IlERarDv~~an 215 (885)
T COG5218 141 LFDREKAVRREAVKVLCYYQEMELNE--ENRIVNLLKDIVQNDPSDEVRRLALLNI--SV-DNSTYPCILERARDVSGAN 215 (885)
T ss_pred HhcchHHHHHHHHHHHHHHHhccCCh--HHHHHHHHHHHHhcCcHHHHHHHHHHHe--ee-CCCcchhHHHHhhhhhHHH
Confidence 78999999999999999876442221 1334566777656788888888775433 21 1111 1122333321111
Q ss_pred cHHHHHHHHHhhccC-----------ChhHH--------HHHHHHHHh-c-CCCChhHHHHHHHHHHHHhccCChHHHHH
Q 003201 222 SKPVIYYLLNRIKEF-----------SEWAQ--------CLVLELVAK-Y-VPLDSNEIFDIMNLLEDRLQHANGAVVLS 280 (840)
Q Consensus 222 ~~~~~~~Ll~~l~~~-----------~~W~Q--------i~iL~lL~~-y-~p~~~~e~~~il~~l~~~L~~~n~aVvle 280 (840)
-+-.+.+.|.++.+. -+||- -.+.++++. | .|.| .++++.+. .|--++.+|...
T Consensus 216 Rr~vY~r~Lp~iGd~~~lsi~kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d----~~lveLle-~lDvSr~sv~v~ 290 (885)
T COG5218 216 RRMVYERCLPRIGDLKSLSIDKRILLMEWGLLDREFSVKGALVDAIASAWRIPED----LRLVELLE-FLDVSRRSVLVA 290 (885)
T ss_pred HHHHHHHHhhhhcchhhccccceehhhhhcchhhhhhHHHHHHHHHHHHhccccc----ccHHHHHH-HHhhhhHHHHHH
Confidence 222344555555432 34541 122222221 1 1111 12333333 334455669999
Q ss_pred HHHHHHhccCCC-c--hhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCcc
Q 003201 281 TIKVFLHLTLSM-T--DVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIF 337 (840)
Q Consensus 281 aik~il~l~~~~-~--~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~ 337 (840)
|++.++.-.+.. . ..-.+++.-.. .=.+||+. .+.-|..=.++..+..+.|+..
T Consensus 291 aik~~F~~R~D~ls~~eFPe~~w~d~T-~E~tfL~r--t~~lyCldnNitell~~fPe~~ 347 (885)
T COG5218 291 AIKGVFEKRPDVLSEKEFPEYLWSDPT-EENTFLSR--TELLYCLDNNITELLGRFPESL 347 (885)
T ss_pred HHHHHHhhccccchhhhcHHHHhhCch-HHHHHHHH--HHHHHHHhccHHHHHhhchhhh
Confidence 999887653321 0 01011111100 01234542 4455555566778888888743
No 129
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.24 E-value=1.3e+02 Score=38.01 Aligned_cols=143 Identities=16% Similarity=0.178 Sum_probs=85.1
Q ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHH--HHHHHHHHHHHhhccCcchHH
Q 003201 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVV--ANCLSALQEIWSLEASTSEEA 213 (840)
Q Consensus 136 l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv--~~al~~L~eI~~~~~~~~~~~ 213 (840)
+...+...+ |++|-+||+|=.-+-.+.+. ++|+..+....-+|..+..+ ++|+.+=+-|.+.=+...
T Consensus 6 l~~~~~~T~-d~d~~~R~~AE~~L~q~~K~-------pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~--- 74 (1010)
T KOG1991|consen 6 LLQIFRATI-DSDAKERKAAEQQLNQLEKQ-------PGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHE--- 74 (1010)
T ss_pred HHHHHHHhc-CCChHHHHHHHHHHHHhhcC-------CcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccC---
Confidence 333344443 56699999987776666553 67777776665577777663 455555566654211110
Q ss_pred HHHHHhhcc---HH-HHHHHHHhhccCChhHHHHHHHHHHhcC-CCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhc
Q 003201 214 SREREALIS---KP-VIYYLLNRIKEFSEWAQCLVLELVAKYV-PLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHL 288 (840)
Q Consensus 214 ~~~~~~li~---~~-~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~-p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l 288 (840)
.|++..-++ |+ +-..++..+....+-..+.+-.++.... ..-++..-.+.+.+...|++.+.+.++.+.-|+..+
T Consensus 75 ~~g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL 154 (1010)
T KOG1991|consen 75 APGRPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQL 154 (1010)
T ss_pred CCCCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHH
Confidence 000001111 11 2234555555556666666666664433 233455677889999999999999999999888766
Q ss_pred c
Q 003201 289 T 289 (840)
Q Consensus 289 ~ 289 (840)
.
T Consensus 155 ~ 155 (1010)
T KOG1991|consen 155 F 155 (1010)
T ss_pred H
Confidence 4
No 130
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.43 E-value=1.4e+02 Score=37.75 Aligned_cols=127 Identities=22% Similarity=0.224 Sum_probs=81.0
Q ss_pred ChhhHhHHHHHhhCCCh--------hhhHH-HHHHHHHhccCCCChHHHHHHHHHHHHHHhh---cCCcccCCCchHHHH
Q 003201 113 DPMIRGLALRSLCSLRV--------ANLVE-YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI---SAPTCIDADFPPTLK 180 (840)
Q Consensus 113 Np~ir~LALr~l~~I~~--------~~i~e-~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~---~p~~~~~~~~~~~L~ 180 (840)
||.-.--|||.+|+|.. .+..| .+...|...++++.-|.|.+||--+.++... +|... .+..+...
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~ 508 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELTH 508 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHH
Confidence 45555679999998742 23344 3466788888999999999999999888743 23333 34556666
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHH
Q 003201 181 HLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLE 246 (840)
Q Consensus 181 ~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~ 246 (840)
++|++|++--|..-|.-||.-....+.... +...-..+++..+|+...++...=.-..+|+
T Consensus 509 ~~l~~d~~lPV~VeAalALq~fI~~~~~~~-----e~~~~hvp~~mq~lL~L~ne~End~Lt~vme 569 (1010)
T KOG1991|consen 509 NCLLNDNELPVRVEAALALQSFISNQEQAD-----EKVSAHVPPIMQELLKLSNEVENDDLTNVME 569 (1010)
T ss_pred HHhccCCcCchhhHHHHHHHHHHhcchhhh-----hhHhhhhhHHHHHHHHHHHhcchhHHHHHHH
Confidence 776668888888877778877765544321 1111223456777777666654434444444
No 131
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=83.21 E-value=94 Score=35.77 Aligned_cols=176 Identities=19% Similarity=0.211 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHhhcCCh---HHHHHHHHHHh-hhcCchhhH---HHHH-HHHHH-Hhh
Q 003201 370 NTYEIVTELCEYAANVD-IPIARESIRAVGKIALQQYDV---NAIVDRLLQFL-EMEKDYVTA---EALV-LVKDL-LRK 439 (840)
Q Consensus 370 Nv~~Iv~EL~~y~~~~d-~~~~~~~i~aI~~la~k~~~~---~~~v~~Ll~LL-~~~~~~v~~---e~v~-~i~~i-l~~ 439 (840)
+..++++++...+...+ ...+..+.+.++.++.|+++. ...++.+.+-+ ......... +++. ..|-+ +|.
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 67789999999887754 556667888899999998753 33455544444 111111222 2222 23444 455
Q ss_pred CCCcchhHHHHHHhhhcc-cCCchHHHHHHHHHHcCcCCCCC-----C---------hHHHHHHHHHhhccCCcHHHHHH
Q 003201 440 YPQWSHDCIAVVGSISSQ-NVQEPKAKAALIWMLGEYSQDMQ-----D---------APYILESLTENWEEEPSAEVRLH 504 (840)
Q Consensus 440 ~p~~~~~~~~~l~~l~~~-~i~~~~ak~a~iwilGEy~~~i~-----~---------~~~il~~l~~~~~~e~~~~vk~~ 504 (840)
+|...+. +..+..++.+ .+. ..+-.+.--+++++.+... + -.+++..+++.|...+ .+.|..
T Consensus 266 ~~~~~~~-~~~L~~lL~~~~~g-~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~-~~~k~~ 342 (415)
T PF12460_consen 266 HPLATEL-LDKLLELLSSPELG-QQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEAD-DEIKSN 342 (415)
T ss_pred CchHHHH-HHHHHHHhCChhhH-HHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcC-hhhHHH
Confidence 5553322 2222222222 111 1222345566677443321 1 1244566778887776 779999
Q ss_pred HHHHHhHHhhcCChhH-HHHHHHHHH---hhccCCChHHHhHHHHHHH
Q 003201 505 LLTAVMKCFFKRPPET-QKVLGAALA---AGLADFHQDVHDRALFYHR 548 (840)
Q Consensus 505 lLta~~Kl~~~~p~e~-~~~l~~vL~---~~~~d~d~dVrdRA~~Y~r 548 (840)
.|+|+.-+.-.-|.+. .+-+..++- .+..-.|.+++--+..-..
T Consensus 343 yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~ 390 (415)
T PF12460_consen 343 YLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLK 390 (415)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999998888642 222333332 3334467787776665443
No 132
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=83.16 E-value=5.3 Score=42.55 Aligned_cols=91 Identities=22% Similarity=0.226 Sum_probs=72.0
Q ss_pred HHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHH
Q 003201 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (840)
Q Consensus 101 ~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~ 180 (840)
+||.|-.-+.+...++|-=+=-++|.+..+.-++.+...+.. .-.+|+||--|+-|+..+-. ++-++.|+
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d--~~E~pMVRhEaAeALGaIa~--------e~~~~vL~ 257 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLIKVLLD--ETEHPMVRHEAAEALGAIAD--------EDCVEVLK 257 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHHHHHHh--hhcchHHHHHHHHHHHhhcC--------HHHHHHHH
Confidence 788899999999999999999999999998776665544443 23589999999999986533 44567888
Q ss_pred HHHhcCCChhHHHHHHHHHHHH
Q 003201 181 HLMLNDPDPQVVANCLSALQEI 202 (840)
Q Consensus 181 ~lLL~D~d~~Vv~~al~~L~eI 202 (840)
+. +.|.++.|.-+|..+|.-+
T Consensus 258 e~-~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 258 EY-LGDEERVVRESCEVALDML 278 (289)
T ss_pred HH-cCCcHHHHHHHHHHHHHHH
Confidence 87 7999999988888877543
No 133
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=83.01 E-value=85 Score=37.72 Aligned_cols=51 Identities=22% Similarity=0.170 Sum_probs=33.8
Q ss_pred CchhHHHHHHHHHHHHhhCCCcccccccEEEEccCCCHHHHHHHHHHHHhc
Q 003201 315 SPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAV 365 (840)
Q Consensus 315 ~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L 365 (840)
++.+|..|+.++..++...|..+.+.+-.+|-...+|..||..+..+|...
T Consensus 493 ~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 493 STFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred CHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 345777777777777777776665555445555566677777777776653
No 134
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=82.98 E-value=14 Score=39.37 Aligned_cols=60 Identities=28% Similarity=0.242 Sum_probs=50.2
Q ss_pred HHHHHHhhcCC--CChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Q 003201 101 TINFLQRDCKD--EDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYH 164 (840)
Q Consensus 101 ~iNtl~KDl~~--~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~ 164 (840)
+|-++.|-|.+ .||++|..|...||.|.+++-++ .+++.+.|+.+.||+.+..++=-+-.
T Consensus 219 ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~~~----vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 219 AIPSLIKVLLDETEHPMVRHEAAEALGAIADEDCVE----VLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHHHH----HHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 57888888876 48999999999999999987554 47888999999999999988854433
No 135
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=82.94 E-value=30 Score=41.90 Aligned_cols=138 Identities=19% Similarity=0.197 Sum_probs=80.5
Q ss_pred HHHhcCCCccchhhhhhhhcc-CCCcchHHH--HHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhC--C
Q 003201 53 SYMTIGIDVSAVFGEMVMCSA-TSDIVLKKM--CYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCS--L 127 (840)
Q Consensus 53 ~~m~lG~DvS~lF~~Vi~l~~-S~d~~~KkL--~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~--I 127 (840)
.+.|+|.--..++-+|....+ |+.-..+|= +=+++..|..+ |.+--.|+.+. .|.||+.|.--.-+++. .
T Consensus 474 Gl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrq--e~Ad~lI~el~---~dkdpilR~~Gm~t~alAy~ 548 (929)
T KOG2062|consen 474 GLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQ--EDADPLIKELL---RDKDPILRYGGMYTLALAYV 548 (929)
T ss_pred hhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhh--hhhHHHHHHHh---cCCchhhhhhhHHHHHHHHh
Confidence 345566655555666655433 333333443 23555666543 33344444444 45589998544333321 1
Q ss_pred --ChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 003201 128 --RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (840)
Q Consensus 128 --~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~ 204 (840)
+.-..+..+ +.=..+|.+..|||+|++|+.=+.-.+|+.+ + ...++|-..-||.|...|..+|--.|.
T Consensus 549 GTgnnkair~l---Lh~aVsD~nDDVrRaAVialGFVl~~dp~~~--~----s~V~lLses~N~HVRyGaA~ALGIaCA 618 (929)
T KOG2062|consen 549 GTGNNKAIRRL---LHVAVSDVNDDVRRAAVIALGFVLFRDPEQL--P----STVSLLSESYNPHVRYGAAMALGIACA 618 (929)
T ss_pred ccCchhhHHHh---hcccccccchHHHHHHHHHheeeEecChhhc--h----HHHHHHhhhcChhhhhhHHHHHhhhhc
Confidence 122222222 1223579999999999999998888899887 3 333554456799999887777755443
No 136
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.19 E-value=24 Score=43.42 Aligned_cols=72 Identities=13% Similarity=0.049 Sum_probs=52.0
Q ss_pred hHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh--hcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 003201 132 LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYH--ISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (840)
Q Consensus 132 i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~--~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~ 204 (840)
+-..........+.|+-+.+|--|+.-+.++++ .....+.....+....+. +.|.|+-|-.||+..+.-++.
T Consensus 724 ~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~-LkdedsyvyLnaI~gv~~Lce 797 (982)
T KOG4653|consen 724 VDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDT-LKDEDSYVYLNAIRGVVSLCE 797 (982)
T ss_pred ccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHH-hcccCceeeHHHHHHHHHHHH
Confidence 334445666777889999999999999999997 322333335566777776 699999999998885544443
No 137
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=82.15 E-value=1.8 Score=52.51 Aligned_cols=97 Identities=14% Similarity=0.143 Sum_probs=67.7
Q ss_pred HHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHH
Q 003201 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (840)
Q Consensus 100 L~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L 179 (840)
-..+.+..-....+...+-++|++||+++.++.++.+.+.+..-- +.+..||..|+.|+-++-..+|+.+ .+.+
T Consensus 490 ~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~~~~v-----~~~l 563 (618)
T PF01347_consen 490 YLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHCPEKV-----REIL 563 (618)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT-HHHH-----HHHH
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcCcHHH-----HHHH
Confidence 445556655566788999999999999999998888765554432 4578999999999999977777665 3455
Q ss_pred HHHHh-cCCChhHHHHHHHHHHHH
Q 003201 180 KHLML-NDPDPQVVANCLSALQEI 202 (840)
Q Consensus 180 ~~lLL-~D~d~~Vv~~al~~L~eI 202 (840)
...+. ...++-|..+|+.+|.+.
T Consensus 564 ~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 564 LPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp HHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred HHHhcCCCCChhHHHHHHHHHHhc
Confidence 55432 246788999998888774
No 138
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.93 E-value=46 Score=43.42 Aligned_cols=159 Identities=13% Similarity=0.118 Sum_probs=91.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhccCCCch-hHHHHHHH-HHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCcccc
Q 003201 262 IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTD-VHQQVYER-IKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFAS 339 (840)
Q Consensus 262 il~~l~~~L~~~n~aVvleaik~il~l~~~~~~-~~~~~l~r-l~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~ 339 (840)
++..+.--|++.+..+.++|++++-.+...... +. .-... ....|.+| ++.+.++|...++++......+|..-..
T Consensus 260 vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~-~D~~~~vR~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 260 VIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRF-NDISVEVRMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHh-ccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence 344444556778899999999988665322111 10 00111 22234444 4578999999999999999888865433
Q ss_pred cccEEE-EccCCCHHHHHHHHHHHHhccCC-C---CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhh-cC--------
Q 003201 340 DYKHFY-CQYNEPSYVKKLKLEMLTAVANE-S---NTYEIVTELCEYAANVDIPIARESIRAVGKIALQ-QY-------- 405 (840)
Q Consensus 340 ~~~~f~-c~~~dp~~IK~~kLdiL~~L~n~-~---Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k-~~-------- 405 (840)
-..... |..+-|.-+|.++.-++....=. . .+..++....+-+++--..+|..++..+..+-.+ |.
T Consensus 338 ~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~ 417 (1266)
T KOG1525|consen 338 STILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKE 417 (1266)
T ss_pred HHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCccc
Confidence 221111 21233333444443332222111 1 1222455555666666678899999998887765 21
Q ss_pred ---ChHHHHHHHHHHhhhcC
Q 003201 406 ---DVNAIVDRLLQFLEMEK 422 (840)
Q Consensus 406 ---~~~~~v~~Ll~LL~~~~ 422 (840)
...|+=+.||.++...+
T Consensus 418 ~t~~~swIp~kLL~~~y~~~ 437 (1266)
T KOG1525|consen 418 ITPPFSWIPDKLLHLYYEND 437 (1266)
T ss_pred ccccccccchhHHhhHhhcc
Confidence 13688888888887664
No 139
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=81.82 E-value=36 Score=40.67 Aligned_cols=135 Identities=19% Similarity=0.122 Sum_probs=91.5
Q ss_pred CChhhHhHHHHHhhC-------CChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCC---cccCCCchHHHHH
Q 003201 112 EDPMIRGLALRSLCS-------LRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKH 181 (840)
Q Consensus 112 ~Np~ir~LALr~l~~-------I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~---~~~~~~~~~~L~~ 181 (840)
.+..+++.|+-++-+ +++.-=-..+..++.+.+.||+..|.+++.-++..+.-.+.+ .+...++++.+.+
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 456777777644433 333322335667777888999999999999888887755443 3456788999999
Q ss_pred HHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHH-HHHHHHhhccCChhHHHHHHHHHHhcCCC
Q 003201 182 LMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPV-IYYLLNRIKEFSEWAQCLVLELVAKYVPL 254 (840)
Q Consensus 182 lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~-~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~ 254 (840)
+ +.|.|+.+..+++.+|....-..... .. ....+.+ .+.++.-.+++++=.|-..+++|+.+.-.
T Consensus 469 ~-~~~~~~n~r~~~~~~Lr~l~f~~de~------~k-~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 469 M-LTDPDFNSRANSLWVLRHLMFNCDEE------EK-FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred H-hcCCCchHHHHHHHHHHHHHhcchHH------HH-HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 7 79999999999999998875422110 01 1111122 23344456677777799999999998654
No 140
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=81.49 E-value=1.7e+02 Score=37.40 Aligned_cols=231 Identities=19% Similarity=0.193 Sum_probs=121.3
Q ss_pred hhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcC-CChhHHHHHHHHHHHHHhhcc
Q 003201 129 VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLND-PDPQVVANCLSALQEIWSLEA 207 (840)
Q Consensus 129 ~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D-~d~~Vv~~al~~L~eI~~~~~ 207 (840)
+|+++|.++..+..+|+|.+..||-.||=++.|+....|-.+. .+.+..+.++ ++- .++..--.|+.+|.|++...
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~La-d~vi~svid~-~~p~e~~~aWHgacLaLAELA~rG- 411 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELA-DQVIGSVIDL-FNPAEDDSAWHGACLALAELALRG- 411 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHH-HHHHHHHHHh-cCcCCchhHHHHHHHHHHHHHhcC-
Confidence 4689999999999999999999999999999999998884332 1223333333 222 23455556666777776421
Q ss_pred CcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhccC-ChHHHHHHHHHHH
Q 003201 208 STSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHA-NGAVVLSTIKVFL 286 (840)
Q Consensus 208 ~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~-n~aVvleaik~il 286 (840)
++-+..+..++. .|++.|. | =..+-+++ +..|-=+|.-++.
T Consensus 412 ------------lLlps~l~dVvp-----------lI~kaL~-Y--------------d~~~G~~s~G~~VRDaAcY~~W 453 (1133)
T KOG1943|consen 412 ------------LLLPSLLEDVVP-----------LILKALH-Y--------------DVRRGQHSVGQHVRDAACYVCW 453 (1133)
T ss_pred ------------CcchHHHHHHHH-----------HHHHHhh-h--------------hhhhcccccccchHHHHHHHHH
Confidence 111111111111 1111111 0 00111222 3333333333333
Q ss_pred hccC-CCc-hhHHHHHHHHHHHHH-HhhcCCCchhHHHHHHHHHHHHhhCCCc-c----cccccEEEEccCCCHHHHHHH
Q 003201 287 HLTL-SMT-DVHQQVYERIKAPLL-TLVSSGSPEQSYAVLSHLHILVMRAPFI-F----ASDYKHFYCQYNEPSYVKKLK 358 (840)
Q Consensus 287 ~l~~-~~~-~~~~~~l~rl~~~L~-~lLss~~~nirY~aL~~l~~l~~~~p~~-~----~~~~~~f~c~~~dp~~IK~~k 358 (840)
.+.. +.+ +++. ++.++...|+ .-+=+++-|.|+.|--++...+-|.++. . ..+.. +|-..+.. ..-
T Consensus 454 Af~Rays~~~l~p-~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~d-y~sV~~rs----Ncy 527 (1133)
T KOG1943|consen 454 AFARAYSPSDLKP-VLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTID-YFSVTNRS----NCY 527 (1133)
T ss_pred HHHhcCChhhhhH-HHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcc-hhhhhhhh----hHH
Confidence 3322 112 2332 4455554443 3344678999999999999999886653 1 11111 11100000 001
Q ss_pred HHHHHhcc-CCCCHHHHHHHHHHh-hhcCCHHHHHHHHHHHHHHHhhcCC
Q 003201 359 LEMLTAVA-NESNTYEIVTELCEY-AANVDIPIARESIRAVGKIALQQYD 406 (840)
Q Consensus 359 LdiL~~L~-n~~Nv~~Iv~EL~~y-~~~~d~~~~~~~i~aI~~la~k~~~ 406 (840)
+++-..++ .+.=.+.++++|..- +..=|..++..+..++.++++..|+
T Consensus 528 ~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk 577 (1133)
T KOG1943|consen 528 LDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPK 577 (1133)
T ss_pred HHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHH
Confidence 22222222 122233445554432 3345888888899999999998875
No 141
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.43 E-value=71 Score=35.06 Aligned_cols=64 Identities=25% Similarity=0.155 Sum_probs=41.9
Q ss_pred HHHHhccCCCChHHHHHHHHHHHHHHhhcCCc-cc--CCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhh
Q 003201 138 GPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT-CI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (840)
Q Consensus 138 ~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~-~~--~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~ 205 (840)
..|...+.+++|-|||.|+.-++-+--- +-. .. ....++.+.+| +.|.++ ..-|+.++..+.++
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL-~~~~~~--~~~a~~alVnlsq~ 72 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQL-LKDLDP--AEPAATALVNLSQK 72 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHH-ccCccc--ccHHHHHHHHHHhh
Confidence 4577889999999999998666544322 111 10 13346667786 799988 55566677777654
No 142
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=80.89 E-value=44 Score=38.13 Aligned_cols=235 Identities=14% Similarity=0.107 Sum_probs=143.1
Q ss_pred HHHHHHHHHh--hcCCC----ChhhHhHHHHHhhCCChhhhH-----HHHHHHHHhccCCCChHHHHHHHHHHHHHHhhc
Q 003201 98 ALLTINFLQR--DCKDE----DPMIRGLALRSLCSLRVANLV-----EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS 166 (840)
Q Consensus 98 ~lL~iNtl~K--Dl~~~----Np~ir~LALr~l~~I~~~~i~-----e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~ 166 (840)
..-.+|-+++ |+++. |.+-|+.-|-.+=..++++|- +.+...+...+.+.+...--.+++++..+-|.+
T Consensus 267 ~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D 346 (604)
T KOG4500|consen 267 LEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRD 346 (604)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccc
Confidence 3344555554 66655 344456556666666666642 225566777788888888999999999999877
Q ss_pred CCcc--cCCCchHHHHHHHhc----CCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhH
Q 003201 167 APTC--IDADFPPTLKHLMLN----DPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWA 240 (840)
Q Consensus 167 p~~~--~~~~~~~~L~~lLL~----D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~ 240 (840)
...+ .+.++.++|.++|-+ |.|..++-+++++|..+.-.-+ .+...+.......++..++-..|-.
T Consensus 347 ~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~--------nka~~~~aGvteaIL~~lk~~~ppv 418 (604)
T KOG4500|consen 347 DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS--------NKAHFAPAGVTEAILLQLKLASPPV 418 (604)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC--------chhhccccchHHHHHHHHHhcCCcc
Confidence 6543 357888888887533 5677888999999987753211 1112233334556677777777778
Q ss_pred HHHHHHHHHhcCCCChhHHH------HHHHHHHHHhccCChH-HHHHHHHHHHhccCC--CchhHHHHH-HHHHHHHHHh
Q 003201 241 QCLVLELVAKYVPLDSNEIF------DIMNLLEDRLQHANGA-VVLSTIKVFLHLTLS--MTDVHQQVY-ERIKAPLLTL 310 (840)
Q Consensus 241 Qi~iL~lL~~y~p~~~~e~~------~il~~l~~~L~~~n~a-Vvleaik~il~l~~~--~~~~~~~~l-~rl~~~L~~l 310 (840)
+-+++-.++...-.-+.-+. ++++.+...-++...+ |.-|.-|++.-+-.. ..++...+. ...+..+++.
T Consensus 419 ~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm 498 (604)
T KOG4500|consen 419 TFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSM 498 (604)
T ss_pred hHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHH
Confidence 88888877765433322222 3445555555566654 888888887655322 112111111 1122345566
Q ss_pred hcCCCchhHHHHHHHHHHHHhhCCCccccc
Q 003201 311 VSSGSPEQSYAVLSHLHILVMRAPFIFASD 340 (840)
Q Consensus 311 Lss~~~nirY~aL~~l~~l~~~~p~~~~~~ 340 (840)
+.+..-+++--+|-.+..+...++....++
T Consensus 499 ~t~~hi~mqnEalVal~~~~~~yl~~~~kd 528 (604)
T KOG4500|consen 499 FTKNHINMQNEALVALLSTESKYLIVIGKD 528 (604)
T ss_pred HHHhhHHHhHHHHHHHHHHHHHhccccchh
Confidence 666667777777777777777776554443
No 143
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=80.55 E-value=10 Score=45.56 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHhcCCCccc--------------------hhhhhhhhccCCCcchHHHHHHHHHHhccCCCchHH--H
Q 003201 43 SKRELFKKVISYMTIGIDVSA--------------------VFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL--L 100 (840)
Q Consensus 43 ~kk~~lkKlI~~m~lG~DvS~--------------------lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~l--L 100 (840)
.++..+..++..+-.|.-.+. +-+.++++++++|-..|-+.--|+..|.+.=++-.+ -
T Consensus 290 ~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~ 369 (690)
T KOG1243|consen 290 IASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQ 369 (690)
T ss_pred HHHHHHHHHHHHhhccccchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcch
Confidence 456666677777766651111 334456888888888887777788888655443222 4
Q ss_pred HHHHHHhhcCCCChhhHhHHHHHhhCCCh----hhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Q 003201 101 TINFLQRDCKDEDPMIRGLALRSLCSLRV----ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLY 163 (840)
Q Consensus 101 ~iNtl~KDl~~~Np~ir~LALr~l~~I~~----~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~ 163 (840)
+.-.+..-+.|.|+.+|..+|++|..|.. ..+...+...+.++-.|.++-+|-+..+|+.|+-
T Consensus 370 I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 370 IFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIA 436 (690)
T ss_pred hHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeeecccc
Confidence 56788889999999999999999988632 2233444444444445444444444444444443
No 144
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=78.74 E-value=3.2 Score=47.04 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhhcC---CCChhhHhHHHHHhhCCCh---hhhHHHHHHHHHhccCCCChHHHHHHHHHH
Q 003201 97 LALLTINFLQRDCK---DEDPMIRGLALRSLCSLRV---ANLVEYLVGPLGLGLKDNNSYVRTVAVIGV 159 (840)
Q Consensus 97 l~lL~iNtl~KDl~---~~Np~ir~LALr~l~~I~~---~~i~e~l~~~v~~~L~d~~pyVRK~Aala~ 159 (840)
+.-...+.+.-||+ +..|..|+-|++++...|. ++....+++.+.++|.+++.-|+--||.|+
T Consensus 302 v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 33345666677777 6789999999999987665 688888999999999999999999999986
No 145
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=78.74 E-value=8.3 Score=34.97 Aligned_cols=69 Identities=20% Similarity=0.182 Sum_probs=54.3
Q ss_pred hHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCChhHHHHHHHHHHh---hccCCChHHHhHHHHHHHHcc
Q 003201 482 APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAA---GLADFHQDVHDRALFYHRLLQ 551 (840)
Q Consensus 482 ~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~~~~l~~vL~~---~~~d~d~dVrdRA~~Y~rLL~ 551 (840)
.+.++..++..|.+++ ..||.+...++..+.-...+++-+-+..+|.. ...|.|+.||.=|...-|||+
T Consensus 25 l~~Il~pVL~~~~D~d-~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 25 LDEILPPVLKCFDDQD-SRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 5677888888999998 99999999998888765555555555666653 346899999999999999875
No 146
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.16 E-value=48 Score=40.86 Aligned_cols=175 Identities=16% Similarity=0.151 Sum_probs=105.4
Q ss_pred HHHHHHhhccC-ChhHHHHHHHHHHhcCCCChhH------HHHHHHHHHHHhcc-CChHHHHHHHHHHHhccCCCchhHH
Q 003201 226 IYYLLNRIKEF-SEWAQCLVLELVAKYVPLDSNE------IFDIMNLLEDRLQH-ANGAVVLSTIKVFLHLTLSMTDVHQ 297 (840)
Q Consensus 226 ~~~Ll~~l~~~-~~W~Qi~iL~lL~~y~p~~~~e------~~~il~~l~~~L~~-~n~aVvleaik~il~l~~~~~~~~~ 297 (840)
+.+||..+..- +|..|..-|.=|....-...++ +..++..|..+|+| .|.-+++-|+|++.++..--|.-..
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 66777777654 8999988777665443222222 35677888899998 4677999999998887422111000
Q ss_pred HHHH-HHHHHHH-HhhcCCCchhHHHHHHHHHHHHhhCCCcc-cc-----c--ccEEEEccCCCHHHHHHHHHHHHhccC
Q 003201 298 QVYE-RIKAPLL-TLVSSGSPEQSYAVLSHLHILVMRAPFIF-AS-----D--YKHFYCQYNEPSYVKKLKLEMLTAVAN 367 (840)
Q Consensus 298 ~~l~-rl~~~L~-~lLss~~~nirY~aL~~l~~l~~~~p~~~-~~-----~--~~~f~c~~~dp~~IK~~kLdiL~~L~n 367 (840)
.+++ .+++.|+ +|+.-.--.+.-=+|.++.+|.+++|..+ +. . |-.|| .+.+.|.+|.|-..+|.
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFF-----Si~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFF-----SIHAQRVALAIAANCCK 323 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHH-----HHHHHHHHHHHHHHHHh
Confidence 1111 1333332 33332233344447889999999999632 21 1 11233 26799999999988884
Q ss_pred C------CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcC
Q 003201 368 E------SNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQY 405 (840)
Q Consensus 368 ~------~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~ 405 (840)
. .-+.+.|.=|..-+...|.....-+.....++++.|.
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 3 2344555545555555666666666666777777663
No 147
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=77.39 E-value=4 Score=28.56 Aligned_cols=28 Identities=39% Similarity=0.551 Sum_probs=23.1
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 003201 176 PPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (840)
Q Consensus 176 ~~~L~~lLL~D~d~~Vv~~al~~L~eI~~ 204 (840)
++.+.++ ++|+++.|..+|+.+|.+|.+
T Consensus 2 lp~l~~~-l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQL-LNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHH-HT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHHHHHHHHHh
Confidence 5677787 699999999999999998864
No 148
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.30 E-value=28 Score=38.09 Aligned_cols=87 Identities=14% Similarity=0.162 Sum_probs=65.8
Q ss_pred HHHHHHHHHhccCC-CchHHHHHHHHHhhcCCCChhhHhHHHHHhhCC---Chh---hhHHHHHHHHHhccCCCChHHHH
Q 003201 81 KMCYLYVGNYAKVN-PDLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RVA---NLVEYLVGPLGLGLKDNNSYVRT 153 (840)
Q Consensus 81 kL~YLyl~~~~~~~-~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I---~~~---~i~e~l~~~v~~~L~d~~pyVRK 153 (840)
..-|+...+|-.-+ || .+.+...+-|.|.|=...+-+|.+|.++ ..+ .+...++-.|.+.++++..-|-|
T Consensus 71 ~~e~~~sk~l~~fd~p~---~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~Vsr 147 (334)
T KOG2933|consen 71 SVEYIVSKNLSPFDDPE---AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSR 147 (334)
T ss_pred cHHHhhhcccCccCcHH---HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 56788888875432 34 5777888889998888887777666654 333 34555677788889999999999
Q ss_pred HHHHHHHHHHhhcCCcc
Q 003201 154 VAVIGVLKLYHISAPTC 170 (840)
Q Consensus 154 ~Aala~~kl~~~~p~~~ 170 (840)
+|++|+.-+|..+-+.+
T Consensus 148 aA~~t~~difs~ln~~i 164 (334)
T KOG2933|consen 148 AACMTLADIFSSLNNSI 164 (334)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998877665
No 149
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=76.50 E-value=1.3e+02 Score=33.33 Aligned_cols=153 Identities=20% Similarity=0.276 Sum_probs=86.9
Q ss_pred hhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcC-Ccc------cCCCchHHHHHHHhcCCChhHHHHHHHHHHHH
Q 003201 130 ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISA-PTC------IDADFPPTLKHLMLNDPDPQVVANCLSALQEI 202 (840)
Q Consensus 130 ~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p-~~~------~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI 202 (840)
..+++.+.+.++++|.+++.-|+--|+-.+.++..-+- ..+ .+.++.+.+..+ ....|-.|.-+|+-.+..|
T Consensus 77 ahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildc-IggeddeVAkAAiesikri 155 (524)
T KOG4413|consen 77 AHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDC-IGGEDDEVAKAAIESIKRI 155 (524)
T ss_pred hhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHH-HcCCcHHHHHHHHHHHHHH
Confidence 35667777888888888888888777777777665332 111 245556666666 3567778888888777777
Q ss_pred HhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHH-----HHHHHHHHHHhcc-CChH
Q 003201 203 WSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI-----FDIMNLLEDRLQH-ANGA 276 (840)
Q Consensus 203 ~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~-----~~il~~l~~~L~~-~n~a 276 (840)
....... +.-.+. .+++.- |+.+.--.|+....++++.++-....-+++-+ ..+++.+..-++- ...-
T Consensus 156 alfpaal--eaiFeS-ellDdl---hlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtL 229 (524)
T KOG4413|consen 156 ALFPAAL--EAIFES-ELLDDL---HLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTL 229 (524)
T ss_pred HhcHHHH--HHhccc-ccCChH---HHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCccee
Confidence 5421110 000000 012211 22222345788888999988877654443322 2355666555544 3344
Q ss_pred HHHHHHHHHHhcc
Q 003201 277 VVLSTIKVFLHLT 289 (840)
Q Consensus 277 Vvleaik~il~l~ 289 (840)
|...|+.++..+.
T Consensus 230 VianciElvteLa 242 (524)
T KOG4413|consen 230 VIANCIELVTELA 242 (524)
T ss_pred ehhhHHHHHHHHH
Confidence 6666666665553
No 150
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.36 E-value=1.6e+02 Score=34.37 Aligned_cols=108 Identities=18% Similarity=0.179 Sum_probs=77.6
Q ss_pred HHHHHHHhh---cCCCChhhHhHHHHHhhCCCh------hhhHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHhhcCCc
Q 003201 100 LTINFLQRD---CKDEDPMIRGLALRSLCSLRV------ANLVEYLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHISAPT 169 (840)
Q Consensus 100 L~iNtl~KD---l~~~Np~ir~LALr~l~~I~~------~~i~e~l~~~v~~~L~d~-~pyVRK~Aala~~kl~~~~p~~ 169 (840)
+..|.++-+ ..|||..+|++|+|.+++.-. ......+...|.++|-|+ +.-|-=.|..|+.++-.+-...
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~ 334 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND 334 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc
Confidence 445555554 578999999999999998743 345667777777777665 5688888888888887653322
Q ss_pred ccCCCc---hHHHHHHHhcCCChhHHHHHHHHHHHHHhhccC
Q 003201 170 CIDADF---PPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (840)
Q Consensus 170 ~~~~~~---~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~ 208 (840)
-..+.+ ..++..+ .+|.|+.+.++|+.++..+.+--++
T Consensus 335 ~l~~~~l~ialrlR~l-~~se~~~~R~aa~~Lfg~L~~l~g~ 375 (533)
T KOG2032|consen 335 DLESYLLNIALRLRTL-FDSEDDKMRAAAFVLFGALAKLAGG 375 (533)
T ss_pred chhhhchhHHHHHHHH-HHhcChhhhhhHHHHHHHHHHHcCC
Confidence 112333 3467776 6899999999999999888765444
No 151
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=74.98 E-value=9.3 Score=47.12 Aligned_cols=124 Identities=13% Similarity=0.149 Sum_probs=88.3
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHhhcC-CCChhhHhHHHHHhhCCChh--hhHHHHHHHHHhccCCCChHHHHHHHH
Q 003201 81 KMCYLYVGNYAKVNPDLALLTINFLQRDCK-DEDPMIRGLALRSLCSLRVA--NLVEYLVGPLGLGLKDNNSYVRTVAVI 157 (840)
Q Consensus 81 kL~YLyl~~~~~~~~dl~lL~iNtl~KDl~-~~Np~ir~LALr~l~~I~~~--~i~e~l~~~v~~~L~d~~pyVRK~Aal 157 (840)
-.+.+.+...-=.+.+++--.+-.|.|.|. +....+|..-+-+||.|+.. .|++-.+|-|-.+|.|+++.|||-+++
T Consensus 949 a~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt~i 1028 (1529)
T KOG0413|consen 949 AVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQTII 1028 (1529)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHHHHH
Confidence 344455444434466777667778888886 44566777777788888775 499999999999999999999999999
Q ss_pred HHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhc
Q 003201 158 GVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (840)
Q Consensus 158 a~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~ 206 (840)
-+.++.+..=-.....=|+.-+..+ -|.++-+..-|=..+.++.+.+
T Consensus 1029 lL~rLLq~~~vKw~G~Lf~Rf~l~l--~D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1029 LLARLLQFGIVKWNGELFIRFMLAL--LDANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred HHHHHHhhhhhhcchhhHHHHHHHH--cccCHHHHHHHHHHHHHHHhhc
Confidence 9999987421111111234445443 4889999888888888887644
No 152
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=74.83 E-value=2.5e+02 Score=35.87 Aligned_cols=216 Identities=19% Similarity=0.106 Sum_probs=121.2
Q ss_pred CchHHHHHHHHHhhcCCC----Ch-hhHhHHHHHhhC--CChhhhHHHHHHHHHhccCCC--------ChHHHHHHHHHH
Q 003201 95 PDLALLTINFLQRDCKDE----DP-MIRGLALRSLCS--LRVANLVEYLVGPLGLGLKDN--------NSYVRTVAVIGV 159 (840)
Q Consensus 95 ~dl~lL~iNtl~KDl~~~----Np-~ir~LALr~l~~--I~~~~i~e~l~~~v~~~L~d~--------~pyVRK~Aala~ 159 (840)
++++.-++.+..- +-+| +. +--||||--|+. +-.|...+.+.+.|.++|.-. ...||-.|+..+
T Consensus 374 ~~Lad~vi~svid-~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~ 452 (1133)
T KOG1943|consen 374 PELADQVIGSVID-LFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVC 452 (1133)
T ss_pred HHHHHHHHHHHHH-hcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHH
Confidence 5666666655554 3332 32 223566666654 566889999999999988532 357999999999
Q ss_pred HHHHhhc-CCcccCCCchHHHHHHH----hcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhc
Q 003201 160 LKLYHIS-APTCIDADFPPTLKHLM----LNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK 234 (840)
Q Consensus 160 ~kl~~~~-p~~~~~~~~~~~L~~lL----L~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~ 234 (840)
--++|-| |+.+ ..+...|...| +-|++..+..+|.+||.|..-+.+.. |....+++..-+..+-+
T Consensus 453 WAf~Rays~~~l--~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~-----p~Gi~Lis~~dy~sV~~--- 522 (1133)
T KOG1943|consen 453 WAFARAYSPSDL--KPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNF-----PHGISLISTIDYFSVTN--- 522 (1133)
T ss_pred HHHHhcCChhhh--hHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCC-----CCchhhhhhcchhhhhh---
Confidence 8888865 4444 23555444333 46999999999999999987654431 11112221111111111
Q ss_pred cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHH-HHhccCChHHHHHHHHHHHhccCCCchh-HHHHHHHHHHHHHHhhc
Q 003201 235 EFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLE-DRLQHANGAVVLSTIKVFLHLTLSMTDV-HQQVYERIKAPLLTLVS 312 (840)
Q Consensus 235 ~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~-~~L~~~n~aVvleaik~il~l~~~~~~~-~~~~l~rl~~~L~~lLs 312 (840)
..|-|+++.. .++. -+.-...+++.+. ..+.|=...+-..++..+-.+....+.. ...++ .||+.-..
T Consensus 523 rsNcy~~l~~--~ia~----~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L----~~lld~~l 592 (1133)
T KOG1943|consen 523 RSNCYLDLCV--SIAE----FSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVL----PPLLDSTL 592 (1133)
T ss_pred hhhHHHHHhH--HHHh----hhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccch----hhhhhhhc
Confidence 1233544321 1221 2222334444433 2366667777777777776654433221 11122 23444444
Q ss_pred CCCchhHHHHHHHHHHHHh
Q 003201 313 SGSPEQSYAVLSHLHILVM 331 (840)
Q Consensus 313 s~~~nirY~aL~~l~~l~~ 331 (840)
+++.+.|.-..-....++.
T Consensus 593 s~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 593 SKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred CCChHHhhhhHHHHHHHHH
Confidence 5678888776666665554
No 153
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=74.79 E-value=2.3e+02 Score=35.48 Aligned_cols=236 Identities=14% Similarity=0.102 Sum_probs=130.3
Q ss_pred HhHHHHHhhCCC----hhhhHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHhhc---CCcccCCCchHHHHHHHhcCCC
Q 003201 117 RGLALRSLCSLR----VANLVEYLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHIS---APTCIDADFPPTLKHLMLNDPD 188 (840)
Q Consensus 117 r~LALr~l~~I~----~~~i~e~l~~~v~~~L~d~-~pyVRK~Aala~~kl~~~~---p~~~~~~~~~~~L~~lLL~D~d 188 (840)
.+.-+-..+..+ ..+....+...++.++... .|..=-+|..++.|.-... |+.. ..|.......+..|.-
T Consensus 427 qea~l~a~~~~~~~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~--~~fl~~~v~~l~~~~~ 504 (1005)
T KOG2274|consen 427 QEALLVAAESVRIDDANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLL--QHFLNATVNALTMDVP 504 (1005)
T ss_pred HHHHHHHHhhcccCcchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHhhccCCC
Confidence 343344444444 3456667777777877654 5655558999999776553 3332 2344443344456777
Q ss_pred hhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 003201 189 PQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLED 268 (840)
Q Consensus 189 ~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~ 268 (840)
+.|..+|+.+++..++..+ | .-.-+.++.-|+....+++.=.-..+++.|...+.-|++.+...-+.+.+
T Consensus 505 ~~~ki~a~~~~~~~~~~~v------l----~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P 574 (1005)
T KOG2274|consen 505 PPVKISAVRAFCGYCKVKV------L----LSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICP 574 (1005)
T ss_pred CchhHHHHHHHHhccCcee------c----cccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhH
Confidence 8889999999988774322 1 11223345555554555555566666666666665566554433233322
Q ss_pred -----HhccCChHHHHH----HHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCC----chhHHHHHHHHHHHHhhCCC
Q 003201 269 -----RLQHANGAVVLS----TIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGS----PEQSYAVLSHLHILVMRAPF 335 (840)
Q Consensus 269 -----~L~~~n~aVvle----aik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~----~nirY~aL~~l~~l~~~~p~ 335 (840)
.++.++--+|.+ +++-+++..... .-..++..+.|++.|..+. +....++++.|..++...|.
T Consensus 575 ~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~----g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~ 650 (1005)
T KOG2274|consen 575 LTINLFLKYSEDPQVASLAQDLFEELLQIAANY----GPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPS 650 (1005)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh----cchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCC
Confidence 233443223332 233333322111 1134567778888887665 78899999999999888765
Q ss_pred cccccc-c-----EEEE-ccCCCHHHHHHHHHHHHhccCC
Q 003201 336 IFASDY-K-----HFYC-QYNEPSYVKKLKLEMLTAVANE 368 (840)
Q Consensus 336 ~~~~~~-~-----~f~c-~~~dp~~IK~~kLdiL~~L~n~ 368 (840)
-+.+-+ . +.-| ...||...=...=|.|.++.+.
T Consensus 651 pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 651 PLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred CccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 332211 0 0112 3455555555555666655443
No 154
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=74.59 E-value=22 Score=34.53 Aligned_cols=81 Identities=15% Similarity=0.062 Sum_probs=56.1
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCC------------ChhhhHHHHHHHHHhccC-CCCh
Q 003201 83 CYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL------------RVANLVEYLVGPLGLGLK-DNNS 149 (840)
Q Consensus 83 ~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I------------~~~~i~e~l~~~v~~~L~-d~~p 149 (840)
+-|-++-..+.+++..--++..|+|-++++||.+.-+||..+-.+ ...++.+. +.+++. ..++
T Consensus 24 ~ileicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~----l~~l~~~~~~~ 99 (142)
T cd03569 24 SILEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDE----LKDLIKTTKNE 99 (142)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHH----HHHHHcccCCH
Confidence 345555555666667778999999999999999999998766542 33344444 444443 5678
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 003201 150 YVRTVAVIGVLKLYHISA 167 (840)
Q Consensus 150 yVRK~Aala~~kl~~~~p 167 (840)
-||++++..+..-....+
T Consensus 100 ~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 100 EVRQKILELIQAWALAFR 117 (142)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 999998877766555443
No 155
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=74.46 E-value=82 Score=35.82 Aligned_cols=128 Identities=14% Similarity=0.140 Sum_probs=91.0
Q ss_pred CCCcchHHHHHHHHHHhccCCCc--------hHHHHHHHHHhhcCCCChhhHhHHHHHh---hCC--ChhhhHHHHHHHH
Q 003201 74 TSDIVLKKMCYLYVGNYAKVNPD--------LALLTINFLQRDCKDEDPMIRGLALRSL---CSL--RVANLVEYLVGPL 140 (840)
Q Consensus 74 S~d~~~KkL~YLyl~~~~~~~~d--------l~lL~iNtl~KDl~~~Np~ir~LALr~l---~~I--~~~~i~e~l~~~v 140 (840)
+++-+.+-.||=.+..+...... +-.+++=+|.||.+ |...|--|||.+ ..+ +..++-..++..|
T Consensus 36 ~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~--~~~ER~QALkliR~~l~~~~~~~~~~~~vvral 113 (371)
T PF14664_consen 36 SDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNK--NDVEREQALKLIRAFLEIKKGPKEIPRGVVRAL 113 (371)
T ss_pred CCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCC--ChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHH
Confidence 33467777777766555433222 33466778888765 577777776655 445 5567788888999
Q ss_pred HhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 003201 141 GLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (840)
Q Consensus 141 ~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~ 204 (840)
..+..+++.-.|..|+-.+..+.-.+|+.+...+-+..|.+. +-|....+..+.+.++..+..
T Consensus 114 vaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~-l~d~~~~~~~~l~~~lL~lLd 176 (371)
T PF14664_consen 114 VAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRA-LIDGSFSISESLLDTLLYLLD 176 (371)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHH-HHhccHhHHHHHHHHHHHHhC
Confidence 999999999999999999999999999988666666777676 356665666666666666653
No 156
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=73.82 E-value=31 Score=34.86 Aligned_cols=66 Identities=23% Similarity=0.194 Sum_probs=51.3
Q ss_pred HHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Q 003201 138 GPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (840)
Q Consensus 138 ~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~ 207 (840)
+.+.+-..|+++++||.|+.+.++.+....+ . ..+.+.+..+ +.|.+..|.-+.--+|.++....|
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~-~--~~~l~~~~~~-~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKETD-F--DLLLEIIERL-LHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhccc-H--HHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhhCH
Confidence 4567777899999999999999998876111 1 3456777776 688899998888888999887654
No 157
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=73.49 E-value=50 Score=35.04 Aligned_cols=148 Identities=16% Similarity=0.219 Sum_probs=79.9
Q ss_pred ccCCCChHHHHHHHHHHHHHHhhcCCcc-c----CC------CchHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc-Ccc
Q 003201 143 GLKDNNSYVRTVAVIGVLKLYHISAPTC-I----DA------DFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA-STS 210 (840)
Q Consensus 143 ~L~d~~pyVRK~Aala~~kl~~~~p~~~-~----~~------~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~-~~~ 210 (840)
+|.|++|-|-|.|+.|...+|+.-=+.+ . +. .+-+.+..+ .++.+++|..+|+-.+..+.--.. +..
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~-~~~~~~gvk~~~iKFle~vIl~qs~~~~ 79 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSL-WDSENPGVKLAAIKFLERVILVQSPGSS 79 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHG-GGSSSHHHHHHHHHHHHHHHHHTS---T
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHHHHhcCCCCC
Confidence 4789999999999999999998522111 0 11 123455565 578899999999998877743111 000
Q ss_pred hHHHH-HHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCC--hHHHHHHHHHHHh
Q 003201 211 EEASR-EREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHAN--GAVVLSTIKVFLH 287 (840)
Q Consensus 211 ~~~~~-~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~n--~aVvleaik~il~ 287 (840)
....+ ....-++ ++.++.-.|.....-| +.|+..+++.+...++... +.++..+++++..
T Consensus 80 ~~~~~~~~~~d~S-------L~~vp~~Hp~l~~~~L----------e~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~ 142 (239)
T PF11935_consen 80 DSPPRRGSPNDFS-------LSSVPPNHPLLNPQQL----------EAEANGLLDRLLDVLQSPHISSPLLTAIINSLSN 142 (239)
T ss_dssp TS---GGGTTS---------GGGS-TT-SSS-HHHH----------HHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHH
T ss_pred CCccccccccCCC-------HHHcCCCCCcCCHHHH----------HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 00000 0000000 0011111121111111 2577888999988887755 6677778887766
Q ss_pred ccCCCchhHHHHHHHHHHHHHHhhc
Q 003201 288 LTLSMTDVHQQVYERIKAPLLTLVS 312 (840)
Q Consensus 288 l~~~~~~~~~~~l~rl~~~L~~lLs 312 (840)
+...-|. ...++.+.|.+|-.
T Consensus 143 Iak~RP~----~~~~Il~~ll~~~~ 163 (239)
T PF11935_consen 143 IAKQRPQ----FMSRILPALLSFNP 163 (239)
T ss_dssp HHHHSGG----GHHHHHHHHHHHHH
T ss_pred HHHHhhH----HHHHHHHHHHhcCc
Confidence 6544333 24556666666543
No 158
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=73.48 E-value=1.8 Score=44.61 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=56.5
Q ss_pred HHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcc
Q 003201 104 FLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (840)
Q Consensus 104 tl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~ 170 (840)
.+.+=+.|+|+..|-.|+-++.......-.+.+...+...+.|++.||||...-++-.++..+|+.+
T Consensus 124 ~~~~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v 190 (213)
T PF08713_consen 124 LLEKWAKSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEV 190 (213)
T ss_dssp HHHHHHHCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHH
Confidence 3444457899999999998888877778888999999999999999999999999999999999876
No 159
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=72.80 E-value=71 Score=36.92 Aligned_cols=155 Identities=12% Similarity=0.101 Sum_probs=93.0
Q ss_pred hHH-HHHhhCCChhhhHH----HHHHHHHhccCC-CChHHHHHHHHHHHHHHhhcCCcccCCC--chHHHHHHHhcCCCh
Q 003201 118 GLA-LRSLCSLRVANLVE----YLVGPLGLGLKD-NNSYVRTVAVIGVLKLYHISAPTCIDAD--FPPTLKHLMLNDPDP 189 (840)
Q Consensus 118 ~LA-Lr~l~~I~~~~i~e----~l~~~v~~~L~d-~~pyVRK~Aala~~kl~~~~p~~~~~~~--~~~~L~~lLL~D~d~ 189 (840)
|++ |-.|.+-+.-.+.+ .+...+...|.| .++..||-|.--+-++.+-.|..+.+.. .+.++.+. -.|.+.
T Consensus 307 alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea-a~ds~~ 385 (516)
T KOG2956|consen 307 ALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA-AKDSQD 385 (516)
T ss_pred HHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH-HhCCch
Confidence 444 45555555433333 455567778888 6777888888888889999998874321 12233333 468899
Q ss_pred hHHHHHHHHHHHHH-hhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcC-CCChhHHHHHHHHHH
Q 003201 190 QVVANCLSALQEIW-SLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV-PLDSNEIFDIMNLLE 267 (840)
Q Consensus 190 ~Vv~~al~~L~eI~-~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~-p~~~~e~~~il~~l~ 267 (840)
.|+..|.-....+. .+.| ..| +..++..+...++---+.+|+.+++.+ .-+.++...+++-+.
T Consensus 386 ~v~~~Aeed~~~~las~~P----~~~-----------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~dia 450 (516)
T KOG2956|consen 386 EVMRVAEEDCLTTLASHLP----LQC-----------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIA 450 (516)
T ss_pred hHHHHHHHHHHHHHHhhCc----hhH-----------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhh
Confidence 88887654433332 2222 122 222233333356666677888887764 335556655555555
Q ss_pred HH----hccCChHHHHHHHHHHHhc
Q 003201 268 DR----LQHANGAVVLSTIKVFLHL 288 (840)
Q Consensus 268 ~~----L~~~n~aVvleaik~il~l 288 (840)
|. -.+.+++|.-+||-|++.+
T Consensus 451 P~~iqay~S~SS~VRKtaVfCLVam 475 (516)
T KOG2956|consen 451 PCVIQAYDSTSSTVRKTAVFCLVAM 475 (516)
T ss_pred hHHHHHhcCchHHhhhhHHHhHHHH
Confidence 54 3567788888888877755
No 160
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=72.54 E-value=86 Score=31.87 Aligned_cols=132 Identities=15% Similarity=0.117 Sum_probs=90.9
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchhHHHH
Q 003201 372 YEIVTELCEYAANVDIPIARESIRAVGKIALQ-QYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAV 450 (840)
Q Consensus 372 ~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k-~~~~~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~~~~ 450 (840)
+.-++.+++.+.+.|..++..+++-|+.+... +-....|+.+++-|.......+..-+....+++..|||++-+.
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~---- 82 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES---- 82 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH----
Confidence 44566777777888999999998888877654 2234469999999999888899999999999999999876321
Q ss_pred HHhhhcccCCchHHHHHHHHHHcCcCCCCC----ChHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCC
Q 003201 451 VGSISSQNVQEPKAKAALIWMLGEYSQDMQ----DAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRP 517 (840)
Q Consensus 451 l~~l~~~~i~~~~ak~a~iwilGEy~~~i~----~~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p 517 (840)
++. ..++.+.-+-..-+++... .....+..++.-.. .+ ...|..++++++|.|-..+
T Consensus 83 --~~~------~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~-~~-r~~R~~Fl~~l~k~f~~~~ 143 (187)
T PF12830_consen 83 --RYS------EGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR-SN-RKSRRKFLKSLLKQFDFDL 143 (187)
T ss_pred --HHH------HHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh-cc-cHhHHHHHHHHHHHHHhhc
Confidence 111 1234444444333333221 15566777776655 44 7788999999999987654
No 161
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=72.18 E-value=9.2 Score=36.05 Aligned_cols=69 Identities=19% Similarity=0.361 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhccCChHHHH-HHHH---HHHhccCCCchhHHHHHHH--HHHHHHHhhcCCCchhHHHHHHHHHHHHhh
Q 003201 260 FDIMNLLEDRLQHANGAVVL-STIK---VFLHLTLSMTDVHQQVYER--IKAPLLTLVSSGSPEQSYAVLSHLHILVMR 332 (840)
Q Consensus 260 ~~il~~l~~~L~~~n~aVvl-eaik---~il~l~~~~~~~~~~~l~r--l~~~L~~lLss~~~nirY~aL~~l~~l~~~ 332 (840)
+.++..|..+|..++...++ =|+. -|+...+.. ..++++ ++..+..|++++++++||-||..+.+++..
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g----r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG----RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG----HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhH----HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 45667777777444332222 2222 233333221 233333 445678899999999999999999998754
No 162
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=72.05 E-value=1.6e+02 Score=36.15 Aligned_cols=74 Identities=16% Similarity=0.127 Sum_probs=58.6
Q ss_pred hHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccC
Q 003201 132 LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (840)
Q Consensus 132 i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~ 208 (840)
+....+..+..+..|+=+.||+.|+-.++-|..--|+.- ..++..+.+. +.|++--+.+.|..+|..+....|.
T Consensus 301 ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE--~~LL~~lVNK-lGDpqnKiaskAsylL~~L~~~HPn 374 (988)
T KOG2038|consen 301 LYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQE--NNLLVLLVNK-LGDPQNKIASKASYLLEGLLAKHPN 374 (988)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHH--HHHHHHHHHh-cCCcchhhhhhHHHHHHHHHhhCCc
Confidence 444555556666678889999999999999998888864 5566666666 5899999999999999999877775
No 163
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=71.18 E-value=26 Score=33.56 Aligned_cols=89 Identities=17% Similarity=0.070 Sum_probs=63.8
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCC---Chh----hhHH-HHHHHHHhccCC---CCh
Q 003201 81 KMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RVA----NLVE-YLVGPLGLGLKD---NNS 149 (840)
Q Consensus 81 kL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I---~~~----~i~e-~l~~~v~~~L~d---~~p 149 (840)
--+-+.++-..+..++.+--++..|+|=++++||.++-+||..+-.+ +.+ +++. .....+.+.+.. .++
T Consensus 18 ~~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~ 97 (133)
T cd03561 18 WALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDP 97 (133)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCH
Confidence 44556666666777888899999999999999999999999887654 112 2222 333356666654 478
Q ss_pred HHHHHHHHHHHHHHhhcCCc
Q 003201 150 YVRTVAVIGVLKLYHISAPT 169 (840)
Q Consensus 150 yVRK~Aala~~kl~~~~p~~ 169 (840)
-||+++.-.+......++..
T Consensus 98 ~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 98 KVREKALELILAWSESFGGH 117 (133)
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 99999988888777666543
No 164
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=69.77 E-value=42 Score=41.68 Aligned_cols=135 Identities=15% Similarity=0.229 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCC-cccccccEE-----EEccCCCHHHHHHHHHHHHhccCCC
Q 003201 296 HQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF-IFASDYKHF-----YCQYNEPSYVKKLKLEMLTAVANES 369 (840)
Q Consensus 296 ~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~-~~~~~~~~f-----~c~~~dp~~IK~~kLdiL~~L~n~~ 369 (840)
++..+..+++.|.+...+.+.-.|-.-|..+..++.+-|. ++.+++..+ -|+.-.|..+|..+++.+..+..+.
T Consensus 861 kQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~ 940 (1030)
T KOG1967|consen 861 KQRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES 940 (1030)
T ss_pred HHHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc
Confidence 4667777888888877766666777777788877778785 555555433 3666677788888888887765543
Q ss_pred ------CHHHHHHHHHHhhhcCC---HHHHHHHHHHHHHHHhhcCCh------HHHHHHHHHHhhhcCchhhHHHH
Q 003201 370 ------NTYEIVTELCEYAANVD---IPIARESIRAVGKIALQQYDV------NAIVDRLLQFLEMEKDYVTAEAL 430 (840)
Q Consensus 370 ------Nv~~Iv~EL~~y~~~~d---~~~~~~~i~aI~~la~k~~~~------~~~v~~Ll~LL~~~~~~v~~e~v 430 (840)
-+..++.-|+.--.+.| ...|..+++.++.+.+..|-. ...+..+.+.|+.+..-|..|++
T Consensus 941 ~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv 1016 (1030)
T KOG1967|consen 941 ETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAV 1016 (1030)
T ss_pred cccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHH
Confidence 46667777666656655 456677888888888877631 23445555555554444544443
No 165
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=69.77 E-value=19 Score=34.74 Aligned_cols=94 Identities=17% Similarity=0.061 Sum_probs=60.3
Q ss_pred cCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCC---ChhhhHH-----HHHHHHHhcc
Q 003201 73 ATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RVANLVE-----YLVGPLGLGL 144 (840)
Q Consensus 73 ~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I---~~~~i~e-----~l~~~v~~~L 144 (840)
+....+.---.-+-++-..+.+++.+--++..|+|-+.++||.+.-+||..+-.+ +.+.+-. .+...+.+++
T Consensus 15 s~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~ 94 (140)
T PF00790_consen 15 SESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLI 94 (140)
T ss_dssp -TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHH
Confidence 3333444445556778888888888999999999999999999999998887654 1222211 2344455544
Q ss_pred CCC--ChH--HHHHHHHHHHHHHhhc
Q 003201 145 KDN--NSY--VRTVAVIGVLKLYHIS 166 (840)
Q Consensus 145 ~d~--~py--VRK~Aala~~kl~~~~ 166 (840)
.++ .+. ||+++.-.+......+
T Consensus 95 ~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 95 KSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 433 233 9998876655544433
No 166
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=68.37 E-value=14 Score=44.46 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=9.3
Q ss_pred CCCChHHHHHHHHHHHH
Q 003201 145 KDNNSYVRTVAVIGVLK 161 (840)
Q Consensus 145 ~d~~pyVRK~Aala~~k 161 (840)
.|+..+||+-|++|+.-
T Consensus 634 ~D~~~fVRQgAlIa~am 650 (929)
T KOG2062|consen 634 SDPVDFVRQGALIALAM 650 (929)
T ss_pred cChHHHHHHHHHHHHHH
Confidence 35555555555555544
No 167
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=68.31 E-value=2e+02 Score=31.95 Aligned_cols=199 Identities=18% Similarity=0.253 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHhcCCCcc-chhhhhhhhccCCCcchHHHHHHHHHHhccCCCc-----hHHHHHH-HHHh---hc-CCC
Q 003201 44 KRELFKKVISYMTIGIDVS-AVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPD-----LALLTIN-FLQR---DC-KDE 112 (840)
Q Consensus 44 kk~~lkKlI~~m~lG~DvS-~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~d-----l~lL~iN-tl~K---Dl-~~~ 112 (840)
+..++.|+.-.|- |..+- .+.++.-.-+-.+|-+.|-+..=-+..+.+ +.| -.++++| -+.| || ...
T Consensus 63 cVscLERLfkake-gahlapnlmpdLQrGLiaddasVKiLackqigcilE-dcDtnaVseillvvNaeilklildcIgge 140 (524)
T KOG4413|consen 63 CVSCLERLFKAKE-GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILE-DCDTNAVSEILLVVNAEILKLILDCIGGE 140 (524)
T ss_pred HHHHHHHHHhhcc-chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHh-cCchhhHHHHHHHhhhhHHHHHHHHHcCC
Confidence 5666777666553 43332 233333333444555566555444433332 222 1244444 4444 44 456
Q ss_pred ChhhHhHHHHHhhCCC-hhhhHHHHHHH-------HHhccCCCChHHHHHHHHHHHHHHhhcCCcc---cCCCchHHHHH
Q 003201 113 DPMIRGLALRSLCSLR-VANLVEYLVGP-------LGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKH 181 (840)
Q Consensus 113 Np~ir~LALr~l~~I~-~~~i~e~l~~~-------v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~---~~~~~~~~L~~ 181 (840)
|..+--.|+.++.+|. .|.-.+.+++. ++++..-.+..+|-...--+.++|..+|+.. ...++++.|..
T Consensus 141 ddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLea 220 (524)
T KOG4413|consen 141 DDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEA 220 (524)
T ss_pred cHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHH
Confidence 7788888999999884 35444444432 1222223467788888888999999999754 45778887776
Q ss_pred HHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhc--cCChhHHHHHHHHHHhcC
Q 003201 182 LMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK--EFSEWAQCLVLELVAKYV 252 (840)
Q Consensus 182 lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~--~~~~W~Qi~iL~lL~~y~ 252 (840)
-|-.-.|..|++|++-+..++...+.+ +.++-....+..+++.+. +.+||..-..|-.+.++.
T Consensus 221 ElkGteDtLVianciElvteLaeteHg--------reflaQeglIdlicnIIsGadsdPfekfralmgfgkff 285 (524)
T KOG4413|consen 221 ELKGTEDTLVIANCIELVTELAETEHG--------REFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFF 285 (524)
T ss_pred HhcCCcceeehhhHHHHHHHHHHHhhh--------hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHh
Confidence 644458999999999999999764432 223333346677788765 468888876665555543
No 168
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.15 E-value=2.9e+02 Score=34.59 Aligned_cols=84 Identities=12% Similarity=0.071 Sum_probs=53.0
Q ss_pred HHHhccCCCchHHHHHHHHHhhc-CCCChhhHhHHHHHhhCCChhhhHHHHHHHH---HhccC--CCChHHHHHHHHHHH
Q 003201 87 VGNYAKVNPDLALLTINFLQRDC-KDEDPMIRGLALRSLCSLRVANLVEYLVGPL---GLGLK--DNNSYVRTVAVIGVL 160 (840)
Q Consensus 87 l~~~~~~~~dl~lL~iNtl~KDl-~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v---~~~L~--d~~pyVRK~Aala~~ 160 (840)
++++..++|--+--+++.+...+ ++.+..-.-..|+++|.=+-.++-+|..+.+ ...+. .-.+.+|-++.-++.
T Consensus 536 ~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIG 615 (982)
T KOG2022|consen 536 LSNWLGEHPMYLNPSLPLLFQGLHNSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIG 615 (982)
T ss_pred HHHHHhcCCcccCchHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHH
Confidence 44556677766566778888888 4444444445688888877666655544432 22232 235788999999998
Q ss_pred HHHh-hcCCcc
Q 003201 161 KLYH-ISAPTC 170 (840)
Q Consensus 161 kl~~-~~p~~~ 170 (840)
++.. .-||..
T Consensus 616 yvls~~~pEe~ 626 (982)
T KOG2022|consen 616 YVLSRLKPEEI 626 (982)
T ss_pred HHHHhccHHhH
Confidence 8764 345544
No 169
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=67.12 E-value=2.1e+02 Score=38.50 Aligned_cols=137 Identities=20% Similarity=0.233 Sum_probs=76.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhccCCCch-hHHHHHHHHHHHHHHhh-cCCCchhHHHHHHHHHHHHhhCCCccc
Q 003201 261 DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTD-VHQQVYERIKAPLLTLV-SSGSPEQSYAVLSHLHILVMRAPFIFA 338 (840)
Q Consensus 261 ~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~-~~~~~l~rl~~~L~~lL-ss~~~nirY~aL~~l~~l~~~~p~~~~ 338 (840)
.++.....+|++.++.|.-=++-.+..+-..... .+++ +.+.|++++ +..+.|+. .||+.+..|+..+|..+.
T Consensus 435 siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqe----Vv~~Lvthi~sg~~~ev~-~aL~vL~~L~~~~~~~l~ 509 (1426)
T PF14631_consen 435 SILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQE----VVGALVTHIGSGNSQEVD-AALDVLCELAEKNPSELQ 509 (1426)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHH----HHHHHHHHHHH--HHHHH-HHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHH----HHHHHHHHHcCCcHHHHH-HHHHHHHHHHhccHHHHH
Confidence 4677778888888877654444444333222222 2333 555677776 44566775 899999999999987544
Q ss_pred c---ccc-EEEEccC-CCHHHHHHHHHHHHhcc--CCCCHHHHHHHH----HHhhhcCCHHHHHH----HHHHHHHHHhh
Q 003201 339 S---DYK-HFYCQYN-EPSYVKKLKLEMLTAVA--NESNTYEIVTEL----CEYAANVDIPIARE----SIRAVGKIALQ 403 (840)
Q Consensus 339 ~---~~~-~f~c~~~-dp~~IK~~kLdiL~~L~--n~~Nv~~Iv~EL----~~y~~~~d~~~~~~----~i~aI~~la~k 403 (840)
+ +++ .+.+..+ .+.-||+. .+||+.|+ ...+...|-+|| ..++...+...++. ++..|+.+|.+
T Consensus 510 ~fa~~l~giLD~l~~Ls~~qiR~l-f~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i~~la~~ 588 (1426)
T PF14631_consen 510 PFATFLKGILDYLDNLSLQQIRKL-FDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMIKHLAAK 588 (1426)
T ss_dssp HTHHHHHGGGGGGGG--HHHHHHH-HHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHHHH
Confidence 4 332 2223222 23456665 88888887 222334555554 46667788888764 44555555544
No 170
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=66.88 E-value=62 Score=35.61 Aligned_cols=143 Identities=14% Similarity=0.174 Sum_probs=71.7
Q ss_pred CCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHH----HH
Q 003201 186 DPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI----FD 261 (840)
Q Consensus 186 D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~----~~ 261 (840)
.++..++...+.++.++...++....-.. .....-....+..+++.+...+.+.+.....+|+.+....+... .+
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~-~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~ 146 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFL-ELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKE 146 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHH-HHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHH-HhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHH
Confidence 46888999999999999987774221000 00000001135667776677788999888888887643322211 23
Q ss_pred HHHHH----HHHhccCChHHHHHHHHHHHhccCCCchhHHHHH-HHHHHHHHHhh-------cCCCchhHHHHHHHHHHH
Q 003201 262 IMNLL----EDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVY-ERIKAPLLTLV-------SSGSPEQSYAVLSHLHIL 329 (840)
Q Consensus 262 il~~l----~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l-~rl~~~L~~lL-------ss~~~nirY~aL~~l~~l 329 (840)
+++.+ ...+++.++.+...|+.++..+-.. +......+ .+..++|..++ +.....++|-++-.+-.+
T Consensus 147 ~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL 225 (312)
T PF03224_consen 147 ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL 225 (312)
T ss_dssp HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Confidence 44444 4444444555667777777666432 22222221 33455666666 233456677777666554
Q ss_pred H
Q 003201 330 V 330 (840)
Q Consensus 330 ~ 330 (840)
.
T Consensus 226 S 226 (312)
T PF03224_consen 226 S 226 (312)
T ss_dssp T
T ss_pred h
Confidence 3
No 171
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=66.59 E-value=5.5 Score=30.26 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=10.7
Q ss_pred HHHHHHHhccCCCChHHHHHHH
Q 003201 135 YLVGPLGLGLKDNNSYVRTVAV 156 (840)
Q Consensus 135 ~l~~~v~~~L~d~~pyVRK~Aa 156 (840)
.+...|.+.+.|++|-||++|+
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav 39 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAV 39 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHH
Confidence 4444444455555555554443
No 172
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=66.40 E-value=2.1e+02 Score=31.58 Aligned_cols=187 Identities=19% Similarity=0.142 Sum_probs=98.5
Q ss_pred HHHHHhccCCCChHHHHHHHHHHHHHHhhc--CCcccC--CCchHHHHHHHhcCC--ChhHHHHHHHHHHHHHhhccCcc
Q 003201 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHIS--APTCID--ADFPPTLKHLMLNDP--DPQVVANCLSALQEIWSLEASTS 210 (840)
Q Consensus 137 ~~~v~~~L~d~~pyVRK~Aala~~kl~~~~--p~~~~~--~~~~~~L~~lLL~D~--d~~Vv~~al~~L~eI~~~~~~~~ 210 (840)
.......+.+++.-.|..|.-++.+++... ++.+.+ ..+.+.+.+. ++-. ...+.+.-+..|.-|.-..+...
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~-lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKS-LKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 334455568889999999999999988543 333311 1223444444 2322 23344322222322321001111
Q ss_pred hHHHHHHHhhccHHHHHHHHHhhccCCh--hHHHHHH---HHHHhcCCCChhHHHHHHHHHHH-----HhccC-------
Q 003201 211 EEASREREALISKPVIYYLLNRIKEFSE--WAQCLVL---ELVAKYVPLDSNEIFDIMNLLED-----RLQHA------- 273 (840)
Q Consensus 211 ~~~~~~~~~li~~~~~~~Ll~~l~~~~~--W~Qi~iL---~lL~~y~p~~~~e~~~il~~l~~-----~L~~~------- 273 (840)
. +.+ ......|.+.+.+.+. =....++ -++..++-.+.++....++.+.. .++..
T Consensus 124 ~----ei~----~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~ 195 (309)
T PF05004_consen 124 E----EIF----EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVA 195 (309)
T ss_pred H----HHH----HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCccccc
Confidence 1 111 1223334444444332 2223444 44455566677777755555442 22221
Q ss_pred ---ChHHHHHHHHHHHhccCCCch--hHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhC
Q 003201 274 ---NGAVVLSTIKVFLHLTLSMTD--VHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA 333 (840)
Q Consensus 274 ---n~aVvleaik~il~l~~~~~~--~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~ 333 (840)
+++|+-+|+....-+....+. +. ..++...+.|..+|.+.+.++|..|=++|..|....
T Consensus 196 ~~~~~~l~~aAL~aW~lLlt~~~~~~~~-~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 196 AEDDAALVAAALSAWALLLTTLPDSKLE-DLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred CCCccHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 246777776654333222222 33 445667778899999999999999999999886543
No 173
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=66.13 E-value=2.4e+02 Score=32.03 Aligned_cols=134 Identities=19% Similarity=0.196 Sum_probs=82.1
Q ss_pred cCCCcchHHHHHHHHHHhccCC---Cch------HHHHHHHHHhhcCC-------CChhhHhHHHHHhhCCC-hh-----
Q 003201 73 ATSDIVLKKMCYLYVGNYAKVN---PDL------ALLTINFLQRDCKD-------EDPMIRGLALRSLCSLR-VA----- 130 (840)
Q Consensus 73 ~S~d~~~KkL~YLyl~~~~~~~---~dl------~lL~iNtl~KDl~~-------~Np~ir~LALr~l~~I~-~~----- 130 (840)
++.+-+.|-=+|+.+.+..+.. |+. +-+.+..+++|+.+ .+--+..-|||++|.+- .+
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~ 82 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVST 82 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhh
Confidence 4556667777888877765433 332 34678899999987 35567788999999752 23
Q ss_pred ---hhHHHHHHHHHhccCCCC-hHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHh--cC--CChhHHHHHHHHHHHH
Q 003201 131 ---NLVEYLVGPLGLGLKDNN-SYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLML--ND--PDPQVVANCLSALQEI 202 (840)
Q Consensus 131 ---~i~e~l~~~v~~~L~d~~-pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL--~D--~d~~Vv~~al~~L~eI 202 (840)
+....++......+.+++ |=.--++.+.+++.-+..|..+ ..+.++++...+. .+ +...|+.-++.++..+
T Consensus 83 l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~-~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~l 161 (372)
T PF12231_consen 83 LSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIM-TSDRVERLLAALHNIKNRFPSKSIISERLNIYKRL 161 (372)
T ss_pred CChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCccc-chhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Confidence 334444555555565553 5455566777777777777655 3455665555431 22 2345666666666666
Q ss_pred Hhhcc
Q 003201 203 WSLEA 207 (840)
Q Consensus 203 ~~~~~ 207 (840)
..+.|
T Consensus 162 l~q~p 166 (372)
T PF12231_consen 162 LSQFP 166 (372)
T ss_pred HHHHH
Confidence 55444
No 174
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=66.12 E-value=68 Score=31.94 Aligned_cols=105 Identities=16% Similarity=0.237 Sum_probs=69.3
Q ss_pred CChhHHHHHHHHHHhcCCCCh--hHHHHHHHHHHHHhccCChH-HHHHHHHHHHh---ccCCCchhHHHH----HHHHHH
Q 003201 236 FSEWAQCLVLELVAKYVPLDS--NEIFDIMNLLEDRLQHANGA-VVLSTIKVFLH---LTLSMTDVHQQV----YERIKA 305 (840)
Q Consensus 236 ~~~W~Qi~iL~lL~~y~p~~~--~e~~~il~~l~~~L~~~n~a-Vvleaik~il~---l~~~~~~~~~~~----l~rl~~ 305 (840)
.+-|.=+.+++.+..+++.+- +.....+..+...|+...+. +.-.|+.++-. .....+++.+++ +.++..
T Consensus 40 ~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~ 119 (165)
T PF08167_consen 40 YSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQ 119 (165)
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHH
Confidence 467999999999988864221 23345667777778776544 44455555433 333344444433 345666
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhhCCCccccccc
Q 003201 306 PLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYK 342 (840)
Q Consensus 306 ~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~ 342 (840)
+++.+++. +...-.+|+.+..++..+|..|.+|..
T Consensus 120 ~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ 154 (165)
T PF08167_consen 120 SLLQLLQD--SSCPETALDALATLLPHHPTTFRPFAN 154 (165)
T ss_pred HHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHH
Confidence 67777763 566779999999999999998888754
No 175
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=65.85 E-value=1.3e+02 Score=37.73 Aligned_cols=163 Identities=13% Similarity=0.146 Sum_probs=113.5
Q ss_pred hHHHHHHHHHHHHHHhcCC-Cccchhhhh----hh-hccCCCcchHHHHHHHHHHhccCCC----chHHHHHHHHHhhcC
Q 003201 41 DDSKRELFKKVISYMTIGI-DVSAVFGEM----VM-CSATSDIVLKKMCYLYVGNYAKVNP----DLALLTINFLQRDCK 110 (840)
Q Consensus 41 ~~~kk~~lkKlI~~m~lG~-DvS~lF~~V----i~-l~~S~d~~~KkL~YLyl~~~~~~~~----dl~lL~iNtl~KDl~ 110 (840)
-..|++++..++..+..-. +.+..+... ++ ...-.|+....+.-.++..++.... ..+..+.|.|..=+.
T Consensus 267 WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lk 346 (815)
T KOG1820|consen 267 WKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLK 346 (815)
T ss_pred hHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhh
Confidence 4678999999999887544 333322222 22 2223344444444445555544333 357788999999999
Q ss_pred CCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcC-CcccC---CCchHHHHHHHhcC
Q 003201 111 DEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISA-PTCID---ADFPPTLKHLMLND 186 (840)
Q Consensus 111 ~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p-~~~~~---~~~~~~L~~lLL~D 186 (840)
+..+..|--++.++=.+....-...+.+.|...+.+++|-+|--...-+-+.++..+ ..+.. .+..+.+... .+|
T Consensus 347 ekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~-~~D 425 (815)
T KOG1820|consen 347 EKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKH-IND 425 (815)
T ss_pred hccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhh-ccC
Confidence 999999987766666655555566778888899999999999998888888888766 33321 3345666665 689
Q ss_pred CChhHHHHHHHHHHHHHh
Q 003201 187 PDPQVVANCLSALQEIWS 204 (840)
Q Consensus 187 ~d~~Vv~~al~~L~eI~~ 204 (840)
.|.-|.-+|..++..+.+
T Consensus 426 ~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 426 TDKDVRKAALEAVAAVMK 443 (815)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 999999999988888765
No 176
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=65.84 E-value=6.7 Score=29.79 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=18.4
Q ss_pred hccCCCchHH--HHHHHHHhhcCCCChhhHhHHH
Q 003201 90 YAKVNPDLAL--LTINFLQRDCKDEDPMIRGLAL 121 (840)
Q Consensus 90 ~~~~~~dl~l--L~iNtl~KDl~~~Np~ir~LAL 121 (840)
..+.+|++.- -+.+.+.+=+.|+.|.+|-.|+
T Consensus 6 iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav 39 (42)
T PF12765_consen 6 IVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAV 39 (42)
T ss_pred HHhcCccccchHHHHHHHHHHhcCCChHHHHHHH
Confidence 3344555432 4556666666777777776554
No 177
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=64.97 E-value=1.5e+02 Score=33.03 Aligned_cols=53 Identities=19% Similarity=0.178 Sum_probs=42.5
Q ss_pred CChhhHhHHHHHhhCC---ChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Q 003201 112 EDPMIRGLALRSLCSL---RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYH 164 (840)
Q Consensus 112 ~Np~ir~LALr~l~~I---~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~ 164 (840)
.|+-....++.+++.= ...++-+.++..+++++.|+.+-|||.-+.++..++.
T Consensus 35 ~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 35 SNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred cCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 5666666666665541 1467788999999999999999999999999999987
No 178
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=64.37 E-value=5.3 Score=40.53 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=54.7
Q ss_pred HHhhcCCCChhhHhHHHHHhhCCChh-hhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcc
Q 003201 105 LQRDCKDEDPMIRGLALRSLCSLRVA-NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (840)
Q Consensus 105 l~KDl~~~Np~ir~LALr~l~~I~~~-~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~ 170 (840)
+.+=..|+|+..|-.|+-++...... .-.+.+...+..++.|++.||||..+-++.-++..+|+.+
T Consensus 110 ~~~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v 176 (197)
T cd06561 110 LEEWAKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERV 176 (197)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHH
Confidence 34445788999998887777765444 5678888889999999999999999999999999999877
No 179
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=64.34 E-value=20 Score=36.38 Aligned_cols=120 Identities=22% Similarity=0.235 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHhccCC---Cc-hHHHHHHHHHhhcCCCChhhHhHHHHHhhCC--------------------------C
Q 003201 79 LKKMCYLYVGNYAKVN---PD-LALLTINFLQRDCKDEDPMIRGLALRSLCSL--------------------------R 128 (840)
Q Consensus 79 ~KkL~YLyl~~~~~~~---~d-l~lL~iNtl~KDl~~~Np~ir~LALr~l~~I--------------------------~ 128 (840)
.||..|-||..++... +. ...-....+ +.||++-+|+.|+.+++.+ .
T Consensus 18 ~~r~l~~yW~~llP~~~~~~~~~~~sLlt~i---l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~t 94 (182)
T PF13251_consen 18 DKRSLFGYWPALLPDSVLQGRPATPSLLTCI---LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSST 94 (182)
T ss_pred CCceeHhhHHHHCCCCCCcCCCCCcchhHHH---HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHH
Confidence 4778888999888766 11 001111122 3488999999999999875 1
Q ss_pred hhhhHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHh------hcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHH
Q 003201 129 VANLVEYLVGPLGLGLKDN-NSYVRTVAVIGVLKLYH------ISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQE 201 (840)
Q Consensus 129 ~~~i~e~l~~~v~~~L~d~-~pyVRK~Aala~~kl~~------~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~e 201 (840)
...++-.+...+...|.+. ++-+-.-.+=|+.-+.. +.++.+ ..++..++.+ +.+.|+.|..+++.++.-
T Consensus 95 La~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll--~~~v~~v~~~-l~~~d~~v~v~~l~~~~~ 171 (182)
T PF13251_consen 95 LASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLL--TEVVTQVRPL-LRHRDPNVRVAALSCLGA 171 (182)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHH--HHHHHHHHHH-HhcCCCcHHHHHHHHHHH
Confidence 1245556666666666655 33333333333333333 333444 4566777776 688999999999888877
Q ss_pred HHh
Q 003201 202 IWS 204 (840)
Q Consensus 202 I~~ 204 (840)
+..
T Consensus 172 l~s 174 (182)
T PF13251_consen 172 LLS 174 (182)
T ss_pred HHc
Confidence 654
No 180
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=63.15 E-value=1.2e+02 Score=35.40 Aligned_cols=160 Identities=16% Similarity=0.167 Sum_probs=94.0
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCccc-----------CCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHH
Q 003201 146 DNNSYVRTVAVIGVLKLYHISAPTCI-----------DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEAS 214 (840)
Q Consensus 146 d~~pyVRK~Aala~~kl~~~~p~~~~-----------~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~ 214 (840)
+...-||..|..|+..+.+.-|..+. +..-.+.|..+=|+|+++-+.+.|+.++..|....
T Consensus 7 ~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gs-------- 78 (728)
T KOG4535|consen 7 SYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGS-------- 78 (728)
T ss_pred hHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhh--------
Confidence 34466888888888776654443220 12223444333368999999999999998886321
Q ss_pred HHHHhhccHHHHHHHHHh-hccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH-HhccCChHHHHHHHHHHHhccCCC
Q 003201 215 REREALISKPVIYYLLNR-IKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLED-RLQHANGAVVLSTIKVFLHLTLSM 292 (840)
Q Consensus 215 ~~~~~li~~~~~~~Ll~~-l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~-~L~~~n~aVvleaik~il~l~~~~ 292 (840)
|+.+..-+.. -..+.|+.....-.++..| ..+.. +.....+-|+-.++||+-.+-...
T Consensus 79 --------k~fls~a~~~~~~~ftpf~v~~a~si~~~~------------r~l~~~l~~e~~~~~~tq~~kcla~lv~~~ 138 (728)
T KOG4535|consen 79 --------KQFLSVAEDTSDHAFTPFSVMIACSIRELH------------RCLLLALVAESSSQTVTQIIKCLANLVSNA 138 (728)
T ss_pred --------HHHHHHHhccCCcCCCchHHHHHHHHHHHH------------HHHHHHHHHhcCchhHHHHHHHHHHHHhcC
Confidence 1111111110 1246676654433333222 12222 223456678888999887764433
Q ss_pred c--hhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhC
Q 003201 293 T--DVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA 333 (840)
Q Consensus 293 ~--~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~ 333 (840)
| .++...+.+..+-+..++.++|+|++..+|-.+..|+..+
T Consensus 139 p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~ 181 (728)
T KOG4535|consen 139 PYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTH 181 (728)
T ss_pred chHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcC
Confidence 2 2333344455666667888999999999999998887543
No 181
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=62.01 E-value=60 Score=31.69 Aligned_cols=86 Identities=15% Similarity=-0.005 Sum_probs=61.6
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCC--------ChhhhHHHHHHHHHhccCC-CChHHH
Q 003201 82 MCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL--------RVANLVEYLVGPLGLGLKD-NNSYVR 152 (840)
Q Consensus 82 L~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I--------~~~~i~e~l~~~v~~~L~d-~~pyVR 152 (840)
-+-|-++-..+.+++.+--++.+|+|=++++||.+.-+||..+-.+ +..--...+...+.+++.+ .++-||
T Consensus 19 ~~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk 98 (144)
T cd03568 19 GLILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVK 98 (144)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHH
Confidence 3445577777777888889999999999999999999998877543 1111234455566777776 688999
Q ss_pred HHHHHHHHHHHhhcC
Q 003201 153 TVAVIGVLKLYHISA 167 (840)
Q Consensus 153 K~Aala~~kl~~~~p 167 (840)
+++...+.......+
T Consensus 99 ~kil~li~~W~~~f~ 113 (144)
T cd03568 99 EKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHHHHHhC
Confidence 998777766554433
No 182
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=60.90 E-value=2.5e+02 Score=32.30 Aligned_cols=73 Identities=10% Similarity=0.036 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCccc--CCCchHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 003201 132 LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (840)
Q Consensus 132 i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~--~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~ 204 (840)
+-...+..+..++.+++|.-|...-..+.++|.+.+..-. ...+.+.+.+.+-...++..++-++-.+..|..
T Consensus 130 i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~ 204 (409)
T PF01603_consen 130 IDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIIN 204 (409)
T ss_dssp S-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHh
Confidence 4456666678888999999999999999999998887541 122233444443235667778888888888765
No 183
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=59.40 E-value=2.4e+02 Score=34.47 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 003201 131 NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (840)
Q Consensus 131 ~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~ 203 (840)
.+..++..-+.....++++.+|+.+.--+.++.+..|+.. =...++++|.+.+.+++.+.++..+-+..
T Consensus 438 ~~~~~~q~L~~i~~~~p~~~lR~~~~~ll~~iL~~~p~~~----rf~~i~dlLe~c~~~~~k~~~I~~lKd~i 506 (633)
T PF08568_consen 438 VFMQFLQALLLISVYCPSPELRKIAFTLLTRILHLFPEET----RFKFIRDLLENCPFESLKASAIGWLKDEI 506 (633)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCcHh----HHHHHHHHHhcCCCHhHHHHHHHHHHHHH
Confidence 3444444445555578999999999999999999999864 35667777667788999999999886654
No 184
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=56.79 E-value=3.3e+02 Score=30.57 Aligned_cols=154 Identities=16% Similarity=0.293 Sum_probs=80.2
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhH
Q 003201 179 LKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNE 258 (840)
Q Consensus 179 L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e 258 (840)
+-+. ...++-.|.+.|+..+.++... |+.++...+. ..
T Consensus 169 ff~~-~~~~~Fdiasdaf~t~~~llt~----------------hk~~~a~fl~-------------------------~n 206 (335)
T PF08569_consen 169 FFKY-VQLPNFDIASDAFSTFKELLTR----------------HKKLVAEFLS-------------------------NN 206 (335)
T ss_dssp HHHH-TTSSSHHHHHHHHHHHHHHHHS----------------SHHHHHHHHH-------------------------HT
T ss_pred HHHH-hcCCccHhHHHHHHHHHHHHhc----------------cHHHHHHHHH-------------------------HH
Confidence 4444 4678888999999999887532 3333333321 01
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHhccCC--CchhHHHHH---HHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhC
Q 003201 259 IFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLS--MTDVHQQVY---ERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA 333 (840)
Q Consensus 259 ~~~il~~l~~~L~~~n~aVvleaik~il~l~~~--~~~~~~~~l---~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~ 333 (840)
...+......+|++.|.-+-..++|++-.+-.. ...+-...+ +.+ ..++.+|++++.+|||-|...+...++.
T Consensus 207 ~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nL-kl~M~lL~d~sk~Iq~eAFhvFKvFVAN- 284 (335)
T PF08569_consen 207 YDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENL-KLMMNLLRDKSKNIQFEAFHVFKVFVAN- 284 (335)
T ss_dssp HHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHH-HHHHHHTT-S-HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHH-HHHHHHhcCcchhhhHHHHHHHHHHHhC-
Confidence 122334555566666666666666666544211 111100010 111 1356688999999999998887766643
Q ss_pred CCcccccccEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcC--CHHHHHH---HHHHHHH
Q 003201 334 PFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANV--DIPIARE---SIRAVGK 399 (840)
Q Consensus 334 p~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~--d~~~~~~---~i~aI~~ 399 (840)
| +.|.-|+ +||. .|=+.++.=|..|..+. |..|..| +|+.|..
T Consensus 285 p--------------~K~~~I~----~iL~-----~Nr~kLl~fl~~f~~~~~~D~qf~~EK~~li~~i~~ 332 (335)
T PF08569_consen 285 P--------------NKPPPIV----DILI-----KNREKLLRFLKDFHTDRTDDEQFEDEKAYLIKQIES 332 (335)
T ss_dssp S--------------S-BHHHH----HHHH-----HTHHHHHHHHHTTTTT--S-CHHHHHHHHHHHHHHT
T ss_pred C--------------CCChHHH----HHHH-----HHHHHHHHHHHhCCCCCCccccHHHHHHHHHHHHHh
Confidence 3 3443333 3333 25555555555555554 6667655 5555543
No 185
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=56.74 E-value=1e+02 Score=29.45 Aligned_cols=90 Identities=13% Similarity=0.068 Sum_probs=64.1
Q ss_pred chHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCC---hh----hh-HHHHHHHHHhccCCC--
Q 003201 78 VLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR---VA----NL-VEYLVGPLGLGLKDN-- 147 (840)
Q Consensus 78 ~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~---~~----~i-~e~l~~~v~~~L~d~-- 147 (840)
+.-.-.-+.++-..+.+++..--++..|+|=++++||.+.-+||+.+-.+. .. ++ ...+...+.+.+.++
T Consensus 15 ~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~ 94 (133)
T smart00288 15 EEDWELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYP 94 (133)
T ss_pred CcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCC
Confidence 334445577788888888889999999999999999999999998886541 11 22 233455666666654
Q ss_pred ChHHHHHHHHHHHHHHhhcC
Q 003201 148 NSYVRTVAVIGVLKLYHISA 167 (840)
Q Consensus 148 ~pyVRK~Aala~~kl~~~~p 167 (840)
.+.||+++...+..-....+
T Consensus 95 ~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 95 LPLVKKRILELIQEWADAFK 114 (133)
T ss_pred cHHHHHHHHHHHHHHHHHHc
Confidence 34599998887776665443
No 186
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.28 E-value=54 Score=40.48 Aligned_cols=103 Identities=20% Similarity=0.207 Sum_probs=61.4
Q ss_pred HHHHHHHhhcCCCChhhHhHHHHHhhCCC------hhhhHHHHHHHHHh-ccCCCChHHHHHHHHHHHHHHhhcCCccc-
Q 003201 100 LTINFLQRDCKDEDPMIRGLALRSLCSLR------VANLVEYLVGPLGL-GLKDNNSYVRTVAVIGVLKLYHISAPTCI- 171 (840)
Q Consensus 100 L~iNtl~KDl~~~Np~ir~LALr~l~~I~------~~~i~e~l~~~v~~-~L~d~~pyVRK~Aala~~kl~~~~p~~~~- 171 (840)
..+||+.+-..+|+...|+.++..+|.++ +.+..-.+...|.. .-.|.++.|||.|+.-+..+.+--.+...
T Consensus 847 ~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLp 926 (982)
T KOG4653|consen 847 VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLP 926 (982)
T ss_pred HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHH
Confidence 67899999999999999988877777642 22222223333333 33689999999999998887663222110
Q ss_pred -----CCCchHHHHHHHhcCCChhHHHHHHHHHHHH
Q 003201 172 -----DADFPPTLKHLMLNDPDPQVVANCLSALQEI 202 (840)
Q Consensus 172 -----~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI 202 (840)
.-+....+...+-.++|-++...|--.+.+|
T Consensus 927 ilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 927 ILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 0012222333322344555555555555555
No 187
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=56.00 E-value=19 Score=26.62 Aligned_cols=27 Identities=26% Similarity=0.155 Sum_probs=22.0
Q ss_pred HHHHHHhccCCCChHHHHHHHHHHHHH
Q 003201 136 LVGPLGLGLKDNNSYVRTVAVIGVLKL 162 (840)
Q Consensus 136 l~~~v~~~L~d~~pyVRK~Aala~~kl 162 (840)
.++.+.++|.++++-||+.|+-|+..+
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 567788888888888888888888765
No 188
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.01 E-value=5.2e+02 Score=32.34 Aligned_cols=168 Identities=18% Similarity=0.152 Sum_probs=85.6
Q ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCC-ChhHHHHHHHHHHHHHhhccCcchH
Q 003201 134 EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDP-DPQVVANCLSALQEIWSLEASTSEE 212 (840)
Q Consensus 134 e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~-d~~Vv~~al~~L~eI~~~~~~~~~~ 212 (840)
+.+...+.+.+ +++|-|||.|=-++-..- ..+++.-.+..++-+++ |+....+|...+-.-.+++=....+
T Consensus 5 e~l~~~l~qTl-~pdps~rk~aEr~L~~~e-------~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~ 76 (960)
T KOG1992|consen 5 ETLANYLLQTL-SPDPSVRKPAERALRSLE-------GQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAED 76 (960)
T ss_pred HHHHHHHHhcC-CCCCccCchHHHHHHHhc-------cCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCC
Confidence 45555666655 467889999866554321 12566666777654444 6776555555554433322110000
Q ss_pred HHHHHHhhccHHHHHHH-HHhhccCChhHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHhccC----ChHHHHHHHHHHH
Q 003201 213 ASREREALISKPVIYYL-LNRIKEFSEWAQCLVLELVAKYVPLDS-NEIFDIMNLLEDRLQHA----NGAVVLSTIKVFL 286 (840)
Q Consensus 213 ~~~~~~~li~~~~~~~L-l~~l~~~~~W~Qi~iL~lL~~y~p~~~-~e~~~il~~l~~~L~~~----n~aVvleaik~il 286 (840)
. +.+..--++..+.++ +..+-...+-.|+.+=+.+...+..|- +-.-+++.-+..++++. +.+|+-.|=..|=
T Consensus 77 ~-~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFk 155 (960)
T KOG1992|consen 77 S-PIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFK 155 (960)
T ss_pred C-ccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 0 000000001122222 222233446678888888887776553 44566777777788743 3455554444555
Q ss_pred hccCCC-c-hh---HHHHHHHHHHHHHHh
Q 003201 287 HLTLSM-T-DV---HQQVYERIKAPLLTL 310 (840)
Q Consensus 287 ~l~~~~-~-~~---~~~~l~rl~~~L~~l 310 (840)
.+.... + ++ ...++.+...|+.-+
T Consensus 156 r~R~efrSdaL~~EIK~vLd~f~~Plt~L 184 (960)
T KOG1992|consen 156 RYRPEFRSDALWLEIKLVLDRFAEPLTDL 184 (960)
T ss_pred hcCcccccHHHHHHHHHHHHhhHhHHHHH
Confidence 553321 1 11 134566666666443
No 189
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=51.45 E-value=26 Score=39.81 Aligned_cols=72 Identities=17% Similarity=0.295 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhccCC-hHHHHHHHHHHHhccCCCchhHHHHHHH--HHHHHHHhhcCCCchhHHHHHHHHHHHHhh
Q 003201 260 FDIMNLLEDRLQHAN-GAVVLSTIKVFLHLTLSMTDVHQQVYER--IKAPLLTLVSSGSPEQSYAVLSHLHILVMR 332 (840)
Q Consensus 260 ~~il~~l~~~L~~~n-~aVvleaik~il~l~~~~~~~~~~~l~r--l~~~L~~lLss~~~nirY~aL~~l~~l~~~ 332 (840)
++++..+..+|+.++ +.++-=|+.=|.++-...|.- ..++++ .+..+..||+.++||+||-||.++.+++..
T Consensus 365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g-k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG-KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH-hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 467788888898877 544433333333332222221 233443 345688899999999999999999888743
No 190
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=50.24 E-value=2.2e+02 Score=26.78 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHhh-cCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 003201 149 SYVRTVAVIGVLKLYHI-SAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (840)
Q Consensus 149 pyVRK~Aala~~kl~~~-~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~ 203 (840)
++||++.+.++..+... +|+.- +++++.+.+++ .. ++.-.-..+.+|..+.
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~W--p~~l~~l~~~~-~~-~~~~~~~~L~iL~~l~ 53 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQW--PDFLEDLLQLL-QS-SPQHLELVLRILRILP 53 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTS--TTHHHHHHHHH-HT-THHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhC--chHHHHHHHHh-cc-chhHHHHHHHHHHHHH
Confidence 68999999999999966 58877 77888888873 44 4555555565555553
No 191
>PF05536 Neurochondrin: Neurochondrin
Probab=49.89 E-value=3.8e+02 Score=32.19 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=20.5
Q ss_pred HHhhcCCCchhHHHHHHHHHHHHhhCC
Q 003201 308 LTLVSSGSPEQSYAVLSHLHILVMRAP 334 (840)
Q Consensus 308 ~~lLss~~~nirY~aL~~l~~l~~~~p 334 (840)
+++|.+.+.+-||+||-.+.+++...+
T Consensus 11 ~~lL~~~~D~~rfagL~lvtk~~~~~~ 37 (543)
T PF05536_consen 11 LSLLKSADDTERFAGLLLVTKLLDADD 37 (543)
T ss_pred HHHhccCCcHHHHHHHHHHHHcCCCch
Confidence 457777778889999988888876443
No 192
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=49.66 E-value=4.6e+02 Score=30.19 Aligned_cols=357 Identities=15% Similarity=0.127 Sum_probs=172.2
Q ss_pred CCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChh
Q 003201 111 DEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQ 190 (840)
Q Consensus 111 ~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~ 190 (840)
..|+-....-+.-|+.+..++..+++..-+-..|+.....++ +.+.|...+. +..|..-+. + +.+.|..
T Consensus 61 ~~~~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~------lf~~~a~~~k---~~~~~~fl~-l-l~r~d~~ 129 (442)
T KOG2759|consen 61 ANNAQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVD------LFHDYAHKLK---RTEWLSFLN-L-LNRQDTF 129 (442)
T ss_pred cccHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHH------HHHHHHHhhh---ccchHHHHH-H-HhcCChH
Confidence 345666777788888888888888888888777765443332 3333333332 234666664 3 5777776
Q ss_pred HHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChh-HHH---HHHHHH
Q 003201 191 VVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSN-EIF---DIMNLL 266 (840)
Q Consensus 191 Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~-e~~---~il~~l 266 (840)
.+.-+...+..+....+... + ... ..+-+..+..+++. . -++=......++|+.+...++- .++ +=...+
T Consensus 130 iv~~~~~Ils~la~~g~~~~-~--~~e-~~~~~~~l~~~l~~-~-~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l 203 (442)
T KOG2759|consen 130 IVEMSFRILSKLACFGNCKM-E--LSE-LDVYKGFLKEQLQS-S-TNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLL 203 (442)
T ss_pred HHHHHHHHHHHHHHhccccc-c--chH-HHHHHHHHHHHHhc-c-CCCchHHHHHHHHHHHhcCcchhheeeecCcchhh
Confidence 66534444444332111000 0 000 00111122233332 1 2222333344455554433321 110 112333
Q ss_pred HHHhcc--CChHHHHHHHHHHHhccCCCchhHHHHHH--HHHHHHHHhhcC--CCchhHHHHHHHHHHHHhhCCCccccc
Q 003201 267 EDRLQH--ANGAVVLSTIKVFLHLTLSMTDVHQQVYE--RIKAPLLTLVSS--GSPEQSYAVLSHLHILVMRAPFIFASD 340 (840)
Q Consensus 267 ~~~L~~--~n~aVvleaik~il~l~~~~~~~~~~~l~--rl~~~L~~lLss--~~~nirY~aL~~l~~l~~~~p~~~~~~ 340 (840)
...+.+ .+-=+.|..+-|+..++=+ +... +.+. .+.+.|...+.. ++--+| +++..+.-++.
T Consensus 204 ~~~l~s~~~~~QlQYqsifciWlLtFn-~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~R-ivlai~~Nll~--------- 271 (442)
T KOG2759|consen 204 IRILASTKCGFQLQYQSIFCIWLLTFN-PHAA-EKLKRFDLIQDLSDIVKESTKEKVTR-IVLAIFRNLLD--------- 271 (442)
T ss_pred HHHHhccCcchhHHHHHHHHHHHhhcC-HHHH-HHHhhccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc---------
Confidence 444422 3344678888888777632 2221 1112 133344444542 222222 22222222222
Q ss_pred ccEEEEccCCCHHHHHHH-HHHHHhccCCCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhc---CChHHHHHH-HH
Q 003201 341 YKHFYCQYNEPSYVKKLK-LEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQ---YDVNAIVDR-LL 415 (840)
Q Consensus 341 ~~~f~c~~~dp~~IK~~k-LdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~---~~~~~~v~~-Ll 415 (840)
..++.+.|... +.++ +| ++...+.-|.+- .-.|++++.++-.--..+-..+ .+...|..- ..
T Consensus 272 -------k~~~~~~~k~~~~~mv--~~---~v~k~l~~L~~r-kysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~s 338 (442)
T KOG2759|consen 272 -------KGPDRETKKDIASQMV--LC---KVLKTLQSLEER-KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRS 338 (442)
T ss_pred -------cCchhhHHHHHHHHHH--hc---CchHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 22233344322 2111 11 233333333321 2357777666554444444332 222233322 23
Q ss_pred HHhhhcCchhhHHHHHHHHHHHhhCCCcchhHHHHHHhhhcccCCchHHHHHHHHHHcCcCCCCCChHHHHHH------H
Q 003201 416 QFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILES------L 489 (840)
Q Consensus 416 ~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~~~~l~~l~~~~i~~~~ak~a~iwilGEy~~~i~~~~~il~~------l 489 (840)
..|.=+..|....-|.- ++-+-+.+-+ .++.+|..++ +.-.||...++++.=||||..+.|....+++. +
T Consensus 339 G~L~WSP~Hk~e~FW~e--Na~rlnenny-ellkiL~~lL-e~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~v 414 (442)
T KOG2759|consen 339 GRLEWSPVHKSEKFWRE--NADRLNENNY-ELLKILIKLL-ETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERV 414 (442)
T ss_pred CCcCCCccccccchHHH--hHHHHhhccH-HHHHHHHHHH-hcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHH
Confidence 33443445666666642 1112122222 2344555554 45568999999999999999998887777653 3
Q ss_pred HHhhccCCcHHHHHHHHHHHhHHhh
Q 003201 490 TENWEEEPSAEVRLHLLTAVMKCFF 514 (840)
Q Consensus 490 ~~~~~~e~~~~vk~~lLta~~Kl~~ 514 (840)
.+-..-++ ++||...|.|+=|+..
T Consensus 415 M~Llnh~d-~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 415 MNLLNHED-PEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHhcCCC-chHHHHHHHHHHHHHh
Confidence 44455566 9999999999888754
No 193
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=49.41 E-value=3.4e+02 Score=28.58 Aligned_cols=160 Identities=19% Similarity=0.197 Sum_probs=91.8
Q ss_pred CCChhhHhHHHHHhhCCChh--hhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhc---
Q 003201 111 DEDPMIRGLALRSLCSLRVA--NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLN--- 185 (840)
Q Consensus 111 ~~Np~ir~LALr~l~~I~~~--~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~--- 185 (840)
..||....-.|+++..+... ...+.+...+..+...++.-++-.+.--+.+++...+..+ +.|+.+|..
T Consensus 12 ~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L~~~L~~~~~ 85 (234)
T PF12530_consen 12 ISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFLQPLLLLLIL 85 (234)
T ss_pred CCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHHHHHHHHHHh
Confidence 34555555556655555432 3444555555555555555555566666677777666443 333333211
Q ss_pred ---------CCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhh-ccCChhHHHHHHHHHHhcCCCC
Q 003201 186 ---------DPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI-KEFSEWAQCLVLELVAKYVPLD 255 (840)
Q Consensus 186 ---------D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l-~~~~~W~Qi~iL~lL~~y~p~~ 255 (840)
+....+..+.-..+.+|+...|.... +.+..+-..+ ...++=.+..-|+.+..+++.+
T Consensus 86 r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~------------~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 86 RIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV------------DLLPLLSGCLNQSCDEVAQALALEALAPLCEAE 153 (234)
T ss_pred hcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH------------HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 22333444544567777776664211 1233333344 6788889999999999999766
Q ss_pred hhHHHHHHHHHHHHhccC-ChHHHHHHHHHHHhc
Q 003201 256 SNEIFDIMNLLEDRLQHA-NGAVVLSTIKVFLHL 288 (840)
Q Consensus 256 ~~e~~~il~~l~~~L~~~-n~aVvleaik~il~l 288 (840)
--+.......+.+.+... .+.|+-+-.+++.-+
T Consensus 154 vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~ 187 (234)
T PF12530_consen 154 VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALV 187 (234)
T ss_pred hccHHHHHHHHHHhcCCccchHHHHHHHHHHHHh
Confidence 555666677777777543 355555555555433
No 194
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=49.39 E-value=3.3e+02 Score=29.88 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=42.1
Q ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccC--CCchHHHHHHH---hcCCChhHHHHHHHHHHHHHh
Q 003201 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCID--ADFPPTLKHLM---LNDPDPQVVANCLSALQEIWS 204 (840)
Q Consensus 136 l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~--~~~~~~L~~lL---L~D~d~~Vv~~al~~L~eI~~ 204 (840)
.+.++.+.+..+++|++-+|+..+.++....+..-.. .++++.+.+.| ++.++..++..|+.+|.++.+
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~ 179 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR 179 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC
Confidence 3445555888899999999999999999887765411 13445555542 223556677888888888875
No 195
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=49.28 E-value=2.6e+02 Score=39.30 Aligned_cols=279 Identities=16% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHhhCCChh--hhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCC--------c--ccCCCchHHHHHHHhcC
Q 003201 119 LALRSLCSLRVA--NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP--------T--CIDADFPPTLKHLMLND 186 (840)
Q Consensus 119 LALr~l~~I~~~--~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~--------~--~~~~~~~~~L~~lLL~D 186 (840)
+|+++++++... ...+.+-..+...+...++-+||.|++++..+++..+. . + ......+..+=+.|
T Consensus 463 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v--~~vl~~ll~~aia~ 540 (2341)
T KOG0891|consen 463 LAFKTLGGFKFSGYSLTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVV--KEVLSALLTVAIAD 540 (2341)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHH--HHHHHHHHHHhccC
Q ss_pred CChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCC-----CChhHHHH
Q 003201 187 PDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVP-----LDSNEIFD 261 (840)
Q Consensus 187 ~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p-----~~~~e~~~ 261 (840)
+||.++...+..+. ....+ .+..+..++.++.++.+..=-.|......+.+..- --+.-...
T Consensus 541 ~~~~i~~~v~~~l~--~~~~~-----------~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~ 607 (2341)
T KOG0891|consen 541 TDPDIRIRVLSSLN--ERFDA-----------QLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKT 607 (2341)
T ss_pred CCcchhhhHHhhhc--cchhh-----------hhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHH
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCcccccc
Q 003201 262 IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDY 341 (840)
Q Consensus 262 il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~ 341 (840)
.+.....+..+...-+-.++.+...++....+.........+...+...+.+.++-..-.++..+..|++..........
T Consensus 608 ~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~ 687 (2341)
T KOG0891|consen 608 LLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWV 687 (2341)
T ss_pred HHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhcc
Q ss_pred cEEEEccCCCHH------HHHHHHHHHHhccCCCCHH--------HHHHHHHHhhhcC-CHHHHHHHHHHHHHHHhhcCC
Q 003201 342 KHFYCQYNEPSY------VKKLKLEMLTAVANESNTY--------EIVTELCEYAANV-DIPIARESIRAVGKIALQQYD 406 (840)
Q Consensus 342 ~~f~c~~~dp~~------IK~~kLdiL~~L~n~~Nv~--------~Iv~EL~~y~~~~-d~~~~~~~i~aI~~la~k~~~ 406 (840)
+.+++...+... .++-.+-.+-.++..+-+. .+++-|...+.+. ...+++++++.+|.++...|.
T Consensus 688 ~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~ 767 (2341)
T KOG0891|consen 688 DELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPY 767 (2341)
T ss_pred chHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchh
Q ss_pred hHHHHH
Q 003201 407 VNAIVD 412 (840)
Q Consensus 407 ~~~~v~ 412 (840)
......
T Consensus 768 ~~~~~~ 773 (2341)
T KOG0891|consen 768 KHKVTE 773 (2341)
T ss_pred HHHHHh
No 196
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=49.23 E-value=2.3e+02 Score=32.72 Aligned_cols=153 Identities=16% Similarity=0.132 Sum_probs=96.3
Q ss_pred HHHHHhcCCCc-------cchhhhhhhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhc---------CCCCh
Q 003201 51 VISYMTIGIDV-------SAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDC---------KDEDP 114 (840)
Q Consensus 51 lI~~m~lG~Dv-------S~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl---------~~~Np 114 (840)
++.+...|.|- ..+|-.+...+.|+|..+--+|-|++.++++.+..-.-++=|.+.+-| -|.|-
T Consensus 296 l~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV 375 (604)
T KOG4500|consen 296 LDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNV 375 (604)
T ss_pred HhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 45555667542 225556678999999999999999999999877654445555544332 23454
Q ss_pred hhHhHHHHHhhCCChh-----hhHHH-HHHHHHhccCCCChHHHHHHHHHHHHHHhhcCC-----cccCCCchHHHHHHH
Q 003201 115 MIRGLALRSLCSLRVA-----NLVEY-LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP-----TCIDADFPPTLKHLM 183 (840)
Q Consensus 115 ~ir~LALr~l~~I~~~-----~i~e~-l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~-----~~~~~~~~~~L~~lL 183 (840)
...-.+|.++-++..| .+++. +.+.|..-+....|-|--+ .++-+||.+...+ ...++..+++|...
T Consensus 376 ~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fk-llgTlrM~~d~qe~~a~eL~kn~~l~ekLv~W- 453 (604)
T KOG4500|consen 376 ERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFK-LLGTLRMIRDSQEYIACELAKNPELFEKLVDW- 453 (604)
T ss_pred hhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHH-HHHHHHHHHhchHHHHHHHhcCHHHHHHHHHh-
Confidence 4444455555554443 23332 4445555565555555544 3555666655444 33456677888887
Q ss_pred hcCCCh-hHHHHHHHHHHHHHhh
Q 003201 184 LNDPDP-QVVANCLSALQEIWSL 205 (840)
Q Consensus 184 L~D~d~-~Vv~~al~~L~eI~~~ 205 (840)
-..+|. ||.+-...++..+.++
T Consensus 454 sks~D~aGv~gESnRll~~lIkH 476 (604)
T KOG4500|consen 454 SKSPDFAGVAGESNRLLLGLIKH 476 (604)
T ss_pred hhCCccchhhhhhhHHHHHHHHh
Confidence 566775 5988888888877765
No 197
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.88 E-value=1e+02 Score=38.76 Aligned_cols=75 Identities=16% Similarity=0.177 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHhccCCCChHHHHHHHHHHHH---HHhhcCCcc---cCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 003201 131 NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLK---LYHISAPTC---IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (840)
Q Consensus 131 ~i~e~l~~~v~~~L~d~~pyVRK~Aala~~k---l~~~~p~~~---~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~ 204 (840)
+|+..+....++.|+|++-.+|=+|..++.- +...+++.+ ....|...+..+ .+.||.++--|+..+..++.
T Consensus 799 ~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~--~~k~~L~v~~a~~~i~~m~~ 876 (1014)
T KOG4524|consen 799 KIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECL--LCKDPLIVQRAFSCIEQMGK 876 (1014)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHH--hcCchHHHHHHHHHHHHHHH
Confidence 6888899999999999999999999888754 334455544 246687777664 78899999999999999887
Q ss_pred hcc
Q 003201 205 LEA 207 (840)
Q Consensus 205 ~~~ 207 (840)
..+
T Consensus 877 ~sg 879 (1014)
T KOG4524|consen 877 YSG 879 (1014)
T ss_pred Hhh
Confidence 544
No 198
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=48.49 E-value=2.6e+02 Score=37.64 Aligned_cols=192 Identities=15% Similarity=0.174 Sum_probs=106.5
Q ss_pred hhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccC
Q 003201 129 VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (840)
Q Consensus 129 ~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~ 208 (840)
..+....+..-...++.++++-||.-++..-..+|......+ +.+.+..|... ..+.+..-+.+|+.+|.++...+++
T Consensus 429 L~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~-qqeVv~~Lvth-i~sg~~~ev~~aL~vL~~L~~~~~~ 506 (1426)
T PF14631_consen 429 LKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYC-QQEVVGALVTH-IGSGNSQEVDAALDVLCELAEKNPS 506 (1426)
T ss_dssp HTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHH-HHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchh-HHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHhccHH
Confidence 355666777777788899999999999999999998764322 34455555554 3556666678999999999876553
Q ss_pred cchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcC---CCC-hhHHHHHHHHHHHHhccCChHH----HHH
Q 003201 209 TSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV---PLD-SNEIFDIMNLLEDRLQHANGAV----VLS 280 (840)
Q Consensus 209 ~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~---p~~-~~e~~~il~~l~~~L~~~n~aV----vle 280 (840)
.- .-....+..+++.+...++=-.-++.++|.... +.. .....++.-.+...|.+++.-. +++
T Consensus 507 ~l---------~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIG 577 (1426)
T PF14631_consen 507 EL---------QPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIG 577 (1426)
T ss_dssp HH---------HHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHH
T ss_pred HH---------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHH
Confidence 11 011124556666666666655556666666543 111 1223445556778888887543 456
Q ss_pred HHHHHHhccCCC--c--------hhHHHHHHHHHHHHHHhh---cCCCchhHHHHHHHHHHHHhh
Q 003201 281 TIKVFLHLTLSM--T--------DVHQQVYERIKAPLLTLV---SSGSPEQSYAVLSHLHILVMR 332 (840)
Q Consensus 281 aik~il~l~~~~--~--------~~~~~~l~rl~~~L~~lL---ss~~~nirY~aL~~l~~l~~~ 332 (840)
|+..+-++.... . ++..+..+.+.. |+.++ ....|+..-+-.+-|..+++.
T Consensus 578 av~~i~~la~~~~~~~~~~~~~~~l~~~~~~q~~~-Ll~l~~ss~~~sp~~~ALfYDELA~li~~ 641 (1426)
T PF14631_consen 578 AVMMIKHLAAKNSESDSSSSERSNLSDEQCKQATS-LLELVQSSSEQSPEALALFYDELANLIQS 641 (1426)
T ss_dssp HHHHHHHTT------------------HHHHHHHH-HHHHHHHHHSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCccccccccCCHHHHHHHHH-HHHHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence 666665554321 1 111122233333 33332 234566666666666666654
No 199
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=48.20 E-value=82 Score=31.30 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=48.7
Q ss_pred HHHcCcCCCCCChHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCChhHHHHHHHHHHhhccCCChHHHhHHH
Q 003201 470 WMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRAL 544 (840)
Q Consensus 470 wilGEy~~~i~~~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~~~~l~~vL~~~~~d~d~dVrdRA~ 544 (840)
|++-.+...+.+...-++.+.+.+..-+ ..+-..++.|+.=|.-.++ ..+|-+.-+|+.+.++.+.+.|.=|.
T Consensus 81 ~lv~~~p~~vle~~~~l~~~ld~l~~lp-~~~a~~ll~Al~PLi~~s~-~lrd~lilvLRKamf~r~~~~R~~Av 153 (158)
T PF14676_consen 81 ELVRKAPLTVLECSSKLKELLDYLSFLP-GDVAIGLLRALLPLIKFSP-SLRDSLILVLRKAMFSRELDARQMAV 153 (158)
T ss_dssp HHHHH-HHHHS-S-HHHHGGGGGTTTS--HHHHHHHHHHHHHHHTT-H-HHHHHHHHHHHHHTT-SSHHHHHHHH
T ss_pred HHHHHChHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHccccHHHHHHHH
Confidence 3333333333333444556666666666 8888889999888875554 68999999999999999999998765
No 200
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=48.08 E-value=95 Score=36.77 Aligned_cols=151 Identities=15% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCccchhhhhhhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCC--ChhhHhHHHH
Q 003201 45 RELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDE--DPMIRGLALR 122 (840)
Q Consensus 45 k~~lkKlI~~m~lG~DvS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~--Np~ir~LALr 122 (840)
...+.+++.++.- ....++--.--.+..+..|=|.||.=+..+....+-.+-++.. .+.++ |.-.|.+|+.
T Consensus 271 ~~~V~~L~~Ly~G----~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~~~~~i~~~---~l~~~~~~~klk~~~l~ 343 (501)
T PF13001_consen 271 PDLVDRLFDLYLG----KGIPPENGRPPASPRLQEKILSLLSKSVIAATSFPNILQIVFD---GLYSDNTNSKLKSLALQ 343 (501)
T ss_pred HHHHHHHHHHHHh----cCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCccHHHHHhc---cccCCccccccchhcch
Q ss_pred Hh---hCC-------ChhhhHHHHHHHHHhccC--------CCChHHHHHHHHHHHHHHhhcCCcc-cCCCchHHHHHHH
Q 003201 123 SL---CSL-------RVANLVEYLVGPLGLGLK--------DNNSYVRTVAVIGVLKLYHISAPTC-IDADFPPTLKHLM 183 (840)
Q Consensus 123 ~l---~~I-------~~~~i~e~l~~~v~~~L~--------d~~pyVRK~Aala~~kl~~~~p~~~-~~~~~~~~L~~lL 183 (840)
++ ..+ ....+.+.+.....+.+. ..+.-.|..|.-|+..+-+..|..+ .+-+++..|-+-
T Consensus 344 F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~s- 422 (501)
T PF13001_consen 344 FIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDS- 422 (501)
T ss_pred hhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHH-
Q ss_pred hcCCChhHHHHHHHHHHHHH
Q 003201 184 LNDPDPQVVANCLSALQEIW 203 (840)
Q Consensus 184 L~D~d~~Vv~~al~~L~eI~ 203 (840)
|.+.++.|..+.--+|..+.
T Consensus 423 L~~~~~evr~sIqeALssl~ 442 (501)
T PF13001_consen 423 LEDESPEVRVSIQEALSSLA 442 (501)
T ss_pred hhCcchHHHHHHHHHHHHHH
No 201
>PF05536 Neurochondrin: Neurochondrin
Probab=47.81 E-value=5.7e+02 Score=30.70 Aligned_cols=178 Identities=15% Similarity=0.152 Sum_probs=99.8
Q ss_pred ChHHHHHHHHHHHHHHhhcCCcccCCCchH---HHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHH
Q 003201 148 NSYVRTVAVIGVLKLYHISAPTCIDADFPP---TLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKP 224 (840)
Q Consensus 148 ~pyVRK~Aala~~kl~~~~p~~~~~~~~~~---~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~ 224 (840)
++..-+.-+++++..|-..|+...+++++. .|.+.+.+..+..++.-|+..|.-|...+.+ ...++...
T Consensus 69 ~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G--------~~aLl~~g 140 (543)
T PF05536_consen 69 PPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEG--------AKALLESG 140 (543)
T ss_pred CHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHh--------HHHHHhcC
Confidence 678888899999999988998876677654 4555533444458888999999988854332 12233333
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHhcC----C----CChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCc---
Q 003201 225 VIYYLLNRIKEFSEWAQCLVLELVAKYV----P----LDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT--- 293 (840)
Q Consensus 225 ~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~----p----~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~--- 293 (840)
.+..|+..+.. .+..+-..++++.... + ........++..+....+.....--++....+-.+-...+
T Consensus 141 ~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~ 219 (543)
T PF05536_consen 141 AVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILP 219 (543)
T ss_pred CHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccc
Confidence 45566665554 4444444444444322 1 1222333444555555544433333444444333211110
Q ss_pred ---hhHHHHHHHHHHHHHHhhcCC-CchhHHHHHHHHHHHHhhCC
Q 003201 294 ---DVHQQVYERIKAPLLTLVSSG-SPEQSYAVLSHLHILVMRAP 334 (840)
Q Consensus 294 ---~~~~~~l~rl~~~L~~lLss~-~~nirY~aL~~l~~l~~~~p 334 (840)
.....-...+..-|..+|.++ .+.-|-.+|.....+++...
T Consensus 220 ~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 220 LESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred cccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 011223334445555666553 56778888888888887643
No 202
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=47.69 E-value=3.9e+02 Score=28.79 Aligned_cols=201 Identities=19% Similarity=0.193 Sum_probs=104.3
Q ss_pred CChhHHHHHHHHHHhc---CC---CChhHHHHHHHHHHHHhccCChHHH---HHHHHHHHhccCCCchhHHHHHHHHHHH
Q 003201 236 FSEWAQCLVLELVAKY---VP---LDSNEIFDIMNLLEDRLQHANGAVV---LSTIKVFLHLTLSMTDVHQQVYERIKAP 306 (840)
Q Consensus 236 ~~~W~Qi~iL~lL~~y---~p---~~~~e~~~il~~l~~~L~~~n~aVv---leaik~il~l~~~~~~~~~~~l~rl~~~ 306 (840)
-++=...+-+++|+.. .| -+.++..-+++....+|.. ...+ +.+...++.+....... ..++...
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D--~~~~~~~l~gl~~L~~~~~~~~~~----~~~i~~~ 84 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD--HACVQPALKGLLALVKMKNFSPES----AVKILRS 84 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc--HhhHHHHHHHHHHHHhCcCCChhh----HHHHHHH
Confidence 3444444455555433 12 1345566666777777742 2233 44444444443322222 2223333
Q ss_pred HHHh--hcCCCchhHHHHHHHHHHHHhhCCCccccc----ccEE--EEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHH
Q 003201 307 LLTL--VSSGSPEQSYAVLSHLHILVMRAPFIFASD----YKHF--YCQYNEPSYVKKLKLEMLTAVANESNTYEIVTEL 378 (840)
Q Consensus 307 L~~l--Lss~~~nirY~aL~~l~~l~~~~p~~~~~~----~~~f--~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL 378 (840)
+..- +.+-....||.+++.+..++.+++...... +..| .|....|+--=+...+++..+...-.+...+++|
T Consensus 85 l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~l 164 (262)
T PF14500_consen 85 LFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDL 164 (262)
T ss_pred HHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 3221 223456779999999999988765432211 1111 1333334334445555555555444445555555
Q ss_pred HH----hhh-----cC-CH-H-HHHHHHHHHHHHHhhcCCh-HHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCC
Q 003201 379 CE----YAA-----NV-DI-P-IARESIRAVGKIALQQYDV-NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQ 442 (840)
Q Consensus 379 ~~----y~~-----~~-d~-~-~~~~~i~aI~~la~k~~~~-~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~ 442 (840)
.+ |-+ -. |+ . -+.++..++..|-...|.. .+++..+++=|......+..+++..+..-+.+|+.
T Consensus 165 Fd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 165 FDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGA 241 (262)
T ss_pred HHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCH
Confidence 54 332 11 22 1 2334555555544333332 47888888888877777888888888888877764
No 203
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=46.94 E-value=1.9e+02 Score=30.42 Aligned_cols=107 Identities=17% Similarity=0.042 Sum_probs=65.4
Q ss_pred chHHHHHHHHHhhcCCCChhhHhHHHHHhhCCCh------hhhHHHHHHHHHh---ccCC--CChHHHHHHHHHHHHHHh
Q 003201 96 DLALLTINFLQRDCKDEDPMIRGLALRSLCSLRV------ANLVEYLVGPLGL---GLKD--NNSYVRTVAVIGVLKLYH 164 (840)
Q Consensus 96 dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~------~~i~e~l~~~v~~---~L~d--~~pyVRK~Aala~~kl~~ 164 (840)
...-+++.++..=...+....++.++|-++.+-. +.+-..+.....+ ...+ ....+.-..+.++.-+..
T Consensus 34 ~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~ 113 (234)
T PF12530_consen 34 VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICC 113 (234)
T ss_pred cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHH
Confidence 4444555555554445555557777777776622 1222222221222 2222 233444455677788888
Q ss_pred hcCCcccCCCchHHHHHHHh-cCCChhHHHHHHHHHHHHHhh
Q 003201 165 ISAPTCIDADFPPTLKHLML-NDPDPQVVANCLSALQEIWSL 205 (840)
Q Consensus 165 ~~p~~~~~~~~~~~L~~lLL-~D~d~~Vv~~al~~L~eI~~~ 205 (840)
..|+.. .+++..+..+ + .+.++.+.+.|+-++..+++.
T Consensus 114 ~~p~~g--~~ll~~ls~~-L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 114 SRPDHG--VDLLPLLSGC-LNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred hChhhH--HHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHH
Confidence 999854 6788888887 6 688888999999999988853
No 204
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=46.28 E-value=6.1e+02 Score=30.60 Aligned_cols=74 Identities=16% Similarity=0.069 Sum_probs=52.3
Q ss_pred hhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcc--cCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 003201 130 ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC--IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (840)
Q Consensus 130 ~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~--~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~ 204 (840)
.+++...+..|.+++..++--||+..+--+..+-..-.+.= .-.++.++|.+- +-|+.+.|..-|+.+|+....
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R-~~DRE~~VR~eAv~~L~~~Qe 161 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSER-LFDREKAVRREAVKVLCYYQE 161 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHh
Confidence 56888888999999999999999998777766655433210 013344555555 468888888888888877643
No 205
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=45.20 E-value=1.2e+02 Score=29.54 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccC
Q 003201 154 VAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (840)
Q Consensus 154 ~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~ 208 (840)
.+.+.+.-+.+..|+.. .+.+..|.+. +..+||.|+.-|+.+|..+.+..+.
T Consensus 20 ~~ileicD~In~~~~~~--k~a~rai~kr-l~~~n~~v~l~AL~LLe~~vkNCG~ 71 (139)
T cd03567 20 EAIQAFCEQINKEPEGP--QLAVRLLAHK-IQSPQEKEALQALTVLEACMKNCGE 71 (139)
T ss_pred HHHHHHHHHHHcCCccH--HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHcCH
Confidence 34455555555555543 3455667776 5899999999999999998876543
No 206
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=45.14 E-value=69 Score=30.27 Aligned_cols=67 Identities=18% Similarity=0.283 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHhhcCChHH------HHHHHHHHhhhcCchhhHHHHHHHHHHHh
Q 003201 372 YEIVTELCEYAAN-VDIPIARESIRAVGKIALQQYDVNA------IVDRLLQFLEMEKDYVTAEALVLVKDLLR 438 (840)
Q Consensus 372 ~~Iv~EL~~y~~~-~d~~~~~~~i~aI~~la~k~~~~~~------~v~~Ll~LL~~~~~~v~~e~v~~i~~il~ 438 (840)
-++++.|..++.. .|+....-+..=||..+.-||.... +=+.+++|+....+.|.-+++..+..++.
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3456666666632 3555555566677777777775322 33567777777777788787777766654
No 207
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=44.99 E-value=30 Score=25.56 Aligned_cols=31 Identities=35% Similarity=0.472 Sum_probs=27.1
Q ss_pred CCCchHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 003201 172 DADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (840)
Q Consensus 172 ~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~ 203 (840)
+.+.++.|.++ +.+.|+.|+.+|+.+|..|+
T Consensus 10 ~~g~i~~Lv~l-l~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 10 EAGGIPPLVQL-LKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HTTHHHHHHHH-TTSSSHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHH-HcCCCHHHHHHHHHHHHHHh
Confidence 46788999998 69999999999999998875
No 208
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=44.22 E-value=15 Score=42.22 Aligned_cols=128 Identities=22% Similarity=0.233 Sum_probs=78.6
Q ss_pred CCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCC--hhhh-------------------
Q 003201 74 TSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR--VANL------------------- 132 (840)
Q Consensus 74 S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~--~~~i------------------- 132 (840)
+.+--.||..|=||..++..-|++-. -.-+.--|+|+||--|++||..++.|- ...+
T Consensus 23 ~~~~~~~~~~ygyw~~~~pd~~~~g~--p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~ 100 (728)
T KOG4535|consen 23 TIKSIEKKVLYGYWSAFIPDTPELGS--PSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMI 100 (728)
T ss_pred HHhhhhhhhhhceeeeecCCCCCCCC--ceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHH
Confidence 33445799999999999877666411 111223578999999999999988651 1111
Q ss_pred ---HHHHHHHHHhcc-CCCChHHHHHHHHHHHHHHhhcCCcccC----CCchHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 003201 133 ---VEYLVGPLGLGL-KDNNSYVRTVAVIGVLKLYHISAPTCID----ADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (840)
Q Consensus 133 ---~e~l~~~v~~~L-~d~~pyVRK~Aala~~kl~~~~p~~~~~----~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~ 204 (840)
+..+...+.-.| ...+|-|---.+-|+..+..-.|-.-.+ -++...++.+ .+.+|+.|..+++.++.-|..
T Consensus 101 a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~-i~~~d~~v~vs~l~~~~~~v~ 179 (728)
T KOG4535|consen 101 ACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPY-IRHKDVNVRVSSLTLLGAIVS 179 (728)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH-hhcCCCChhhHHHHHHHHHHh
Confidence 111222222222 2233444444555666665555521111 3456788887 699999999999998887754
No 209
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=43.57 E-value=1e+02 Score=36.46 Aligned_cols=116 Identities=25% Similarity=0.172 Sum_probs=66.7
Q ss_pred CCCcchHHHHH--HHHHHhccCCCchHHHHHHHHHhhcCCCChhhHh-----HHHHHhhCCChhhhHHHHHHHHHhccCC
Q 003201 74 TSDIVLKKMCY--LYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRG-----LALRSLCSLRVANLVEYLVGPLGLGLKD 146 (840)
Q Consensus 74 S~d~~~KkL~Y--Lyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~-----LALr~l~~I~~~~i~e~l~~~v~~~L~d 146 (840)
|+.-.+||=.= +++..|. .+|++-=.||-+.. |.++..|. +||-..|. +.-.++..+ +.-..+|
T Consensus 493 Tqhe~i~Rglgig~aLi~yg--rqe~add~I~ell~---d~ds~lRy~G~fs~alAy~GT-gn~~vv~~l---Lh~avsD 563 (926)
T COG5116 493 TQHERIKRGLGIGFALILYG--RQEMADDYINELLY---DKDSILRYNGVFSLALAYVGT-GNLGVVSTL---LHYAVSD 563 (926)
T ss_pred hhhhhHHhhhhhhhhHhhhh--hHHHHHHHHHHHhc---CchHHhhhccHHHHHHHHhcC-CcchhHhhh---heeeccc
Confidence 34444555433 3445554 45555556666654 45666663 33333332 222333222 2223689
Q ss_pred CChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 003201 147 NNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (840)
Q Consensus 147 ~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~ 204 (840)
.+..|||+|++|+.-++-.+|+.+ +..+ ++|-...|+.|.+....+|---+.
T Consensus 564 ~nDDVrRAAViAlGfvc~~D~~~l-----v~tv-elLs~shN~hVR~g~AvaLGiaca 615 (926)
T COG5116 564 GNDDVRRAAVIALGFVCCDDRDLL-----VGTV-ELLSESHNFHVRAGVAVALGIACA 615 (926)
T ss_pred CchHHHHHHHHheeeeEecCcchh-----hHHH-HHhhhccchhhhhhhHHHhhhhhc
Confidence 999999999999998888788765 2233 443456788887665555544443
No 210
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=43.34 E-value=5.6e+02 Score=29.33 Aligned_cols=78 Identities=19% Similarity=0.181 Sum_probs=65.7
Q ss_pred hhhhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccC
Q 003201 67 EMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLK 145 (840)
Q Consensus 67 ~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~ 145 (840)
.|++.+.+ ....|||+--++-+|++.-|+++--++|.-.-=|.|.+--||--|+|-|.-.+..+...-+.+.+.++|+
T Consensus 29 ~il~~~k~-~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 29 GILKAVKG-TSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLN 106 (460)
T ss_pred HHHHHhhc-chHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHH
Confidence 34444333 5679999999999999999999999999877777888899999999999988888888888888888887
No 211
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=42.82 E-value=6.7e+02 Score=30.14 Aligned_cols=451 Identities=14% Similarity=0.135 Sum_probs=220.3
Q ss_pred CCchHHHHHHHHHhhcCCCChh-hHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhh-cCCccc
Q 003201 94 NPDLALLTINFLQRDCKDEDPM-IRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SAPTCI 171 (840)
Q Consensus 94 ~~dl~lL~iNtl~KDl~~~Np~-ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~-~p~~~~ 171 (840)
++++-+++-=+|++.+...+|. -.+.+=|-++ ..+|.-+++-.-.++.|.++.|..-..|+-.+..+-+. -|...
T Consensus 54 ~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~--~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~- 130 (858)
T COG5215 54 NDQLRMVAGLILKNSLHANDPELQKGCSQRWLG--MRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSL- 130 (858)
T ss_pred cHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCcccc-
Confidence 3444444444555666655553 3467777777 45677788888888888888888888888777777664 23221
Q ss_pred CCCchHHHHHHHhcCCCh-hHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHH-hh-ccCChhHHHHHHHHH
Q 003201 172 DADFPPTLKHLMLNDPDP-QVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLN-RI-KEFSEWAQCLVLELV 248 (840)
Q Consensus 172 ~~~~~~~L~~lLL~D~d~-~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~-~l-~~~~~W~Qi~iL~lL 248 (840)
=+++.+.+.+. ..|..| .+...++..+..++.... |+........++..++. .+ ++.+--...--|+.|
T Consensus 131 wp~lm~~mv~n-vg~eqp~~~k~~sl~~~gy~ces~~-------Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL 202 (858)
T COG5215 131 WPGLMEEMVRN-VGDEQPVSGKCESLGICGYHCESEA-------PEDLIQMSNVILFAIVMGALKNETTSAVRLAALKAL 202 (858)
T ss_pred chHHHHHHHHh-ccccCchHhHHHHHHHHHHHhhccC-------HHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHH
Confidence 13344444443 345544 567788888888876432 11100000111222221 01 122222233333333
Q ss_pred Hh---cCC---CChhHHHHHHHHHHHHhccCChHHHHHHHHH---HHhcc-CCCchhHHHHHHHH-HHHHHHhhcCCCch
Q 003201 249 AK---YVP---LDSNEIFDIMNLLEDRLQHANGAVVLSTIKV---FLHLT-LSMTDVHQQVYERI-KAPLLTLVSSGSPE 317 (840)
Q Consensus 249 ~~---y~p---~~~~e~~~il~~l~~~L~~~n~aVvleaik~---il~l~-~~~~~~~~~~l~rl-~~~L~~lLss~~~n 317 (840)
.. +.. ..+.|..-++..+-..-+.....+.-.|.-| ++++. ..++ ..++++ ...+++++.+...+
T Consensus 203 ~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~----~ymE~aL~alt~~~mks~nd~ 278 (858)
T COG5215 203 MDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQ----SYMENALAALTGRFMKSQNDE 278 (858)
T ss_pred HHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCcchH
Confidence 32 111 1233445566666666666655555444444 44332 1121 233433 33446677776666
Q ss_pred hHHHHHHHHHHHHhh----------CCCc-cccc-------------ccEEEEc-----cCCCHHHHHHH---HHHHHhc
Q 003201 318 QSYAVLSHLHILVMR----------APFI-FASD-------------YKHFYCQ-----YNEPSYVKKLK---LEMLTAV 365 (840)
Q Consensus 318 irY~aL~~l~~l~~~----------~p~~-~~~~-------------~~~f~c~-----~~dp~~IK~~k---LdiL~~L 365 (840)
+..-+.+--..|+.. .|+. .++| +-.+.|+ ++|+-.+.+-+ |++-..+
T Consensus 279 va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~ 358 (858)
T COG5215 279 VAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL 358 (858)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH
Confidence 666665555444432 1211 0111 1112233 22333333222 3333333
Q ss_pred cCCCCHHHHHHHHHHhhh----cCCHHHHHHHHHHHHHHHhhcCC---hHHHHHHHHHHhhhc-Cc---hhhHHHHHHHH
Q 003201 366 ANESNTYEIVTELCEYAA----NVDIPIARESIRAVGKIALQQYD---VNAIVDRLLQFLEME-KD---YVTAEALVLVK 434 (840)
Q Consensus 366 ~n~~Nv~~Iv~EL~~y~~----~~d~~~~~~~i~aI~~la~k~~~---~~~~v~~Ll~LL~~~-~~---~v~~e~v~~i~ 434 (840)
+.. .|++-.++|+. ..|-.=+..++-+.|.+-.- |+ .+.+|...+.-+... .+ .|.+-+...+-
T Consensus 359 ~gd----~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~g-p~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g 433 (858)
T COG5215 359 KGD----KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHG-PCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFG 433 (858)
T ss_pred hhh----HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcC-ccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHH
Confidence 332 24444445543 23334455677788776543 32 134555554433321 11 22222222222
Q ss_pred HHHhh-----CCCcchhHHHHHHhhhcccCCchHHHHHHHHHHcCcCCCCCC------------hHHHHHHHHHhh--cc
Q 003201 435 DLLRK-----YPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD------------APYILESLTENW--EE 495 (840)
Q Consensus 435 ~il~~-----~p~~~~~~~~~l~~l~~~~i~~~~ak~a~iwilGEy~~~i~~------------~~~il~~l~~~~--~~ 495 (840)
.|-.. .|..+-. ..+...+.--.+.|..-..+.|-.-.+.++++. -+.++..++..- ..
T Consensus 434 ~iad~va~~i~p~~Hl~--~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~ 511 (858)
T COG5215 434 AIADHVAMIISPCGHLV--LEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELAL 511 (858)
T ss_pred HHHHHHHHhcCcccccc--HHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhc
Confidence 22221 2333211 112222112234576677788987777766643 234555555322 12
Q ss_pred CCcHHHHHHHHHHHhHHhhcCChhHHHHHHHHHHhh-------cc--CCChHHHhHHHHHHHHccCCHHHHHhhcCCCCC
Q 003201 496 EPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAG-------LA--DFHQDVHDRALFYHRLLQYNVSVAERVVNPPKQ 566 (840)
Q Consensus 496 e~~~~vk~~lLta~~Kl~~~~p~e~~~~l~~vL~~~-------~~--d~d~dVrdRA~~Y~rLL~~~~~~a~~vv~~~~p 566 (840)
-. ...|..+.+|+.-+....|....+++..++... .. +.-.+++||+. --.|.+.-......|+....|
T Consensus 512 Ne-~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~-~~elqSN~~~vl~aiir~~~~ 589 (858)
T COG5215 512 NE-SNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLL-VEELQSNYIGVLEAIIRTRRR 589 (858)
T ss_pred cc-hhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHhcCC
Confidence 22 567999999999998888876666665544432 21 12367888877 445554434556667765555
Q ss_pred Cc
Q 003201 567 AV 568 (840)
Q Consensus 567 ~~ 568 (840)
.+
T Consensus 590 ~i 591 (858)
T COG5215 590 DI 591 (858)
T ss_pred Cc
Confidence 44
No 212
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=42.34 E-value=2.2e+02 Score=28.74 Aligned_cols=93 Identities=19% Similarity=0.299 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHH
Q 003201 42 DSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLAL 121 (840)
Q Consensus 42 ~~kk~~lkKlI~~m~lG~DvS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LAL 121 (840)
+.-|+.+.|-=++.... ....+-++..+.-+|...-+-.|-.+..-...+|+-++ .-|-.+. +++.||..|+
T Consensus 21 ~eek~llW~~R~~~~~~---p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~aL---eLL~~~f--~d~~VR~yAV 92 (171)
T cd00872 21 EEDKELLWKLRHECRKK---PQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQAL---ELLDCNF--PDEHVREFAV 92 (171)
T ss_pred HHHHHHHHHHHHHHhhC---cHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHHH---HHCCCcC--CCHHHHHHHH
Confidence 45566777766655433 44467777777878877777777777777777776654 2222333 4599999999
Q ss_pred HHhhCCChhhhHHHHHHHHHh
Q 003201 122 RSLCSLRVANLVEYLVGPLGL 142 (840)
Q Consensus 122 r~l~~I~~~~i~e~l~~~v~~ 142 (840)
+.|.++.+.++..++.+-|+.
T Consensus 93 ~~L~~~sd~eL~~yL~QLVQa 113 (171)
T cd00872 93 RCLEKLSDDELLQYLLQLVQV 113 (171)
T ss_pred HHHHhCCHHHHHHHHHHHHHH
Confidence 999999999998887766554
No 213
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=42.22 E-value=5.8e+02 Score=29.20 Aligned_cols=60 Identities=5% Similarity=0.037 Sum_probs=42.5
Q ss_pred HHHHHHHhhCCCcccccc-cEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhh
Q 003201 324 SHLHILVMRAPFIFASDY-KHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAA 383 (840)
Q Consensus 324 ~~l~~l~~~~p~~~~~~~-~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~ 383 (840)
+-|-..-...|++-..-+ .+|.|..|+|..||+.++.=|-.+|..++...|.++|...+.
T Consensus 46 q~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 46 QFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLN 106 (460)
T ss_pred HHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHH
Confidence 333344444554433322 246678999999999999999999999998888887766554
No 214
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=41.77 E-value=34 Score=34.76 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHH
Q 003201 131 NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHL 182 (840)
Q Consensus 131 ~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~l 182 (840)
.+++.++.+++++|+..++-|.++++-++-++...++-.- +.+.+.++.+
T Consensus 76 PvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG--~aLvPyyrqL 125 (183)
T PF10274_consen 76 PVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG--EALVPYYRQL 125 (183)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHH
Confidence 4577888889999999999999888888888866655443 5566666554
No 215
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=41.58 E-value=1.5e+02 Score=35.09 Aligned_cols=157 Identities=13% Similarity=0.029 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhcCCCccchhhhhhh-hccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhh-cCCCChhhHhHHHH
Q 003201 45 RELFKKVISYMTIGIDVSAVFGEMVM-CSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRD-CKDEDPMIRGLALR 122 (840)
Q Consensus 45 k~~lkKlI~~m~lG~DvS~lF~~Vi~-l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KD-l~~~Np~ir~LALr 122 (840)
+..+--=++++..|..- .+-+.|+ ++.+.|-.+|--|-+.+..-.--...+ =++.++..= .+|.|..+|-.|.-
T Consensus 499 ~Rglgig~aLi~ygrqe--~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~--~vv~~lLh~avsD~nDDVrRAAVi 574 (926)
T COG5116 499 KRGLGIGFALILYGRQE--MADDYINELLYDKDSILRYNGVFSLALAYVGTGNL--GVVSTLLHYAVSDGNDDVRRAAVI 574 (926)
T ss_pred HhhhhhhhhHhhhhhHH--HHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcc--hhHhhhheeecccCchHHHHHHHH
Confidence 44444445666666522 2555654 666666666655544433222112221 233343333 56788888888888
Q ss_pred HhhCCChhhhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHH
Q 003201 123 SLCSLRVANLVEYLVGPLGLGL-KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQE 201 (840)
Q Consensus 123 ~l~~I~~~~i~e~l~~~v~~~L-~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~e 201 (840)
++|=++-.+ ..+.+....+| .+.+++||--.+.++.-.+.-..+ ....+.|..| ..|.+.-|..+|+.++.-
T Consensus 575 AlGfvc~~D--~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~----~~a~diL~~L-~~D~~dfVRQ~AmIa~~m 647 (926)
T COG5116 575 ALGFVCCDD--RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD----KVATDILEAL-MYDTNDFVRQSAMIAVGM 647 (926)
T ss_pred heeeeEecC--cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc----HHHHHHHHHH-hhCcHHHHHHHHHHHHHH
Confidence 887654432 11222233333 345789998777776654443333 2346777776 488888887766666544
Q ss_pred H-HhhccCcchH
Q 003201 202 I-WSLEASTSEE 212 (840)
Q Consensus 202 I-~~~~~~~~~~ 212 (840)
| .+.+++..+.
T Consensus 648 Il~Q~n~~Lnp~ 659 (926)
T COG5116 648 ILMQCNPELNPN 659 (926)
T ss_pred HHhhcCcccChh
Confidence 4 4556555443
No 216
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.33 E-value=8.2e+02 Score=30.71 Aligned_cols=103 Identities=15% Similarity=0.111 Sum_probs=66.4
Q ss_pred CcchHHHHHHHHHHhccC----CCch------------HHHHHHHHHhhcCCCCh--hhHhHHHHHhhCCChhhhHHHHH
Q 003201 76 DIVLKKMCYLYVGNYAKV----NPDL------------ALLTINFLQRDCKDEDP--MIRGLALRSLCSLRVANLVEYLV 137 (840)
Q Consensus 76 d~~~KkL~YLyl~~~~~~----~~dl------------~lL~iNtl~KDl~~~Np--~ir~LALr~l~~I~~~~i~e~l~ 137 (840)
|...|-.+-+|..+|.+. ++|. --++++.+ +++++- ..-+-||..+|.-.-|+=.+.+.
T Consensus 52 d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lM---l~s~~~iQ~qlseal~~Ig~~DFP~kWptLl 128 (960)
T KOG1992|consen 52 DPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLM---LSSPFNIQKQLSEALSLIGKRDFPDKWPTLL 128 (960)
T ss_pred ChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHhccccchhhHHHH
Confidence 789999999999999752 2222 01222221 123221 23367899999888899999999
Q ss_pred HHHHhccCCCChHHHHHHHHHHHH-HHhhcCCcccCCCchHHHHHH
Q 003201 138 GPLGLGLKDNNSYVRTVAVIGVLK-LYHISAPTCIDADFPPTLKHL 182 (840)
Q Consensus 138 ~~v~~~L~d~~pyVRK~Aala~~k-l~~~~p~~~~~~~~~~~L~~l 182 (840)
+++.+.++.. .++--+++++..+ +|+++.-...-..+...++..
T Consensus 129 ~dL~~~ls~~-D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~v 173 (960)
T KOG1992|consen 129 PDLVARLSSG-DFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLV 173 (960)
T ss_pred HHHHhhcccc-chHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHH
Confidence 9999988844 4666667777766 888876544333344445554
No 217
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=41.01 E-value=1.7e+02 Score=29.91 Aligned_cols=72 Identities=25% Similarity=0.320 Sum_probs=48.9
Q ss_pred HHHHHHHHhccCCC-ChHHHHHHHHHHHHHHhh-cCCccc--CCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Q 003201 134 EYLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHI-SAPTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (840)
Q Consensus 134 e~l~~~v~~~L~d~-~pyVRK~Aala~~kl~~~-~p~~~~--~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~ 207 (840)
..+.+-...+|... +|| |=-|..++..+... .++.+. -+.++.-|++. |+.+|+.|+.+++.+|..+....+
T Consensus 37 ~~~Lpif~dGL~Et~~Py-~flA~~g~~dll~~~~~~kilPvlPqLI~plk~A-L~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPY-RFLARQGIKDLLERGGGEKILPVLPQLIIPLKRA-LNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hhHHHHHHhhhhccCccH-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHhhh
Confidence 34555566666554 444 45666677777666 554431 25566778888 699999999999999999865443
No 218
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=40.85 E-value=1.3e+02 Score=29.28 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=31.8
Q ss_pred HHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccC
Q 003201 159 VLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (840)
Q Consensus 159 ~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~ 208 (840)
+.-+.+..++.. .+.+..|++- +..+||.|+.-|+.+|..+.++.+.
T Consensus 24 icD~I~~~~~~~--k~a~ral~KR-l~~~n~~v~l~AL~LLe~~vkNCG~ 70 (144)
T cd03568 24 VCDKVKSDENGA--KDCLKAIMKR-LNHKDPNVQLRALTLLDACAENCGK 70 (144)
T ss_pred HHHHHhcCCccH--HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHCCH
Confidence 333344443332 3455667776 5889999999999999998876553
No 219
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=40.85 E-value=2e+02 Score=27.92 Aligned_cols=85 Identities=11% Similarity=-0.038 Sum_probs=56.3
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCC---Ch----hhhH-HHHHHHHHhccCC------CC
Q 003201 83 CYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RV----ANLV-EYLVGPLGLGLKD------NN 148 (840)
Q Consensus 83 ~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I---~~----~~i~-e~l~~~v~~~L~d------~~ 148 (840)
+-+-++-..+.+++.+--++-.++|=++++||.+.-+||..+-.+ +. .+++ ......+.+++.+ .+
T Consensus 21 ~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~ 100 (139)
T cd03567 21 AIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTS 100 (139)
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCC
Confidence 334466666677888889999999999999999988888766433 11 1222 3344456666642 56
Q ss_pred hHHHHHHHHHHHHHHhhcC
Q 003201 149 SYVRTVAVIGVLKLYHISA 167 (840)
Q Consensus 149 pyVRK~Aala~~kl~~~~p 167 (840)
+-||++.+.-+..-...++
T Consensus 101 ~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 101 EKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 7888887766655444444
No 220
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=40.42 E-value=72 Score=29.30 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=45.6
Q ss_pred HHHHHHHHhHHhhcCChhHHHHH------HHHHHhhccC-CChHHHhHHHHHHHHccCCHHHHHhhcCC
Q 003201 502 RLHLLTAVMKCFFKRPPETQKVL------GAALAAGLAD-FHQDVHDRALFYHRLLQYNVSVAERVVNP 563 (840)
Q Consensus 502 k~~lLta~~Kl~~~~p~e~~~~l------~~vL~~~~~d-~d~dVrdRA~~Y~rLL~~~~~~a~~vv~~ 563 (840)
|..++..++-+..+++ ..|+.+ .-+|..|..| .||=+|++|.+-.|-|-.+.++.+++|..
T Consensus 3 K~~lvrlianl~~~~~-~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNK-EVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCH-HHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 5566777777777776 355544 4688888766 69999999999998888777777777753
No 221
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=40.02 E-value=90 Score=30.78 Aligned_cols=118 Identities=16% Similarity=0.150 Sum_probs=68.1
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHH
Q 003201 146 DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPV 225 (840)
Q Consensus 146 d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~ 225 (840)
...+-||-.|.+++.|++...++... ..+.+.+..+ +.+.+..-...++.++..+.+--|+ .|.. .+.+...
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~-~~~~~~i~~~-~~~~~~d~~i~~~~~l~~lfp~~~d----v~~~--l~~~eg~ 87 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFK-EKISDFIESL-LDEGEMDSLIIAFSALTALFPGPPD----VGSE--LFLSEGF 87 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HCCHHCCHHHHHHHHHHHHCTTTHH----HHHH--HCCTTTH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHH-HccccchhHHHHHHHHHHHhCCCHH----HHHH--HHhhhhH
Confidence 45678999999999999877776652 2334455555 4554444555666777776543322 2221 2233344
Q ss_pred HHHHHHhhc--cCChhHHHHHHHHHHhcCCCChhH----HHHHHHHHHHHhcc
Q 003201 226 IYYLLNRIK--EFSEWAQCLVLELVAKYVPLDSNE----IFDIMNLLEDRLQH 272 (840)
Q Consensus 226 ~~~Ll~~l~--~~~~W~Qi~iL~lL~~y~p~~~~e----~~~il~~l~~~L~~ 272 (840)
...++.... ..++=.|..++++|..=+-.. .- ....++.+...+++
T Consensus 88 ~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~-~~r~~I~~~~~~~L~~~~~~ 139 (157)
T PF11701_consen 88 LESLLPLASRKSKDRKVQKAALELLSAACIDK-SCRTFISKNYVSWLKELYKN 139 (157)
T ss_dssp HHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSH-HHHHCCHHHCHHHHHHHTTT
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHccH-HHHHHHHHHHHHHHHHHHcc
Confidence 555555555 567777888888887654321 11 23345556666643
No 222
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=39.66 E-value=34 Score=32.48 Aligned_cols=42 Identities=14% Similarity=0.028 Sum_probs=34.7
Q ss_pred hhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcc
Q 003201 129 VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (840)
Q Consensus 129 ~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~ 170 (840)
++.-+..+...+.+-|+|++|+|+.||.-.+-.+.+..++.+
T Consensus 32 s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f 73 (122)
T cd03572 32 SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDF 73 (122)
T ss_pred CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHH
Confidence 455677888888999999999999999999999888766443
No 223
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=39.47 E-value=1.5e+02 Score=28.62 Aligned_cols=89 Identities=18% Similarity=0.212 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhh
Q 003201 154 VAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI 233 (840)
Q Consensus 154 ~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l 233 (840)
.+++-+.-+.+..++.. .+.+..|.+- +..+||.|+..|+.+|..+.++.+..++. ....+..+..|...+
T Consensus 24 ~~~l~icD~i~~~~~~~--kea~~~l~kr-l~~~~~~vq~~aL~lld~lvkNcg~~f~~------ev~~~~fl~~l~~l~ 94 (140)
T PF00790_consen 24 SLILEICDLINSSPDGA--KEAARALRKR-LKHGNPNVQLLALTLLDALVKNCGPRFHR------EVASKEFLDELVKLI 94 (140)
T ss_dssp HHHHHHHHHHHTSTTHH--HHHHHHHHHH-HTTSSHHHHHHHHHHHHHHHHHSHHHHHH------HHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccH--HHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHcCCHHHHH------HHhHHHHHHHHHHHH
Confidence 45556666666665544 4456677777 57899999999999998888754432211 112222333343333
Q ss_pred c--cCChh--HHHHHHHHHHhc
Q 003201 234 K--EFSEW--AQCLVLELVAKY 251 (840)
Q Consensus 234 ~--~~~~W--~Qi~iL~lL~~y 251 (840)
. ...++ .+-++++++..+
T Consensus 95 ~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 95 KSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp HHTTTHHHSHHHHHHHHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHH
Confidence 2 23444 666777777654
No 224
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=39.07 E-value=5.3e+02 Score=31.67 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=32.7
Q ss_pred hcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhc---CchhhHHHHHHHHHHHhhCCC
Q 003201 383 ANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEME---KDYVTAEALVLVKDLLRKYPQ 442 (840)
Q Consensus 383 ~~~d~~~~~~~i~aI~~la~k~~~~~~~v~~Ll~LL~~~---~~~v~~e~v~~i~~il~~~p~ 442 (840)
...+..++..+.-+++.++.+. +...+++.++-++..- ...++--++..+..++-+.++
T Consensus 439 ~tt~~~vkvn~L~c~~~l~q~l-D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~ 500 (700)
T KOG2137|consen 439 KTTNLYVKVNVLPCLAGLIQRL-DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYS 500 (700)
T ss_pred cccchHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc
Confidence 3456667777777777777443 3334677766665532 234444444445544444444
No 225
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=38.29 E-value=6e+02 Score=28.23 Aligned_cols=109 Identities=12% Similarity=0.183 Sum_probs=67.0
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHhcCC-CChhHHHHHHHHH-------HHHhccC----C---------hHHHHHHHHH
Q 003201 226 IYYLLNRIKEFSEWAQCLVLELVAKYVP-LDSNEIFDIMNLL-------EDRLQHA----N---------GAVVLSTIKV 284 (840)
Q Consensus 226 ~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p-~~~~e~~~il~~l-------~~~L~~~----n---------~aVvleaik~ 284 (840)
...+.+.++...+-.+.-.|++|..... .....+.++++.. ..++... . +.|-...++.
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 4455556666677788899999998877 5556666665442 2233211 1 2778888888
Q ss_pred HHhccC-CCchhHHHHHH--HHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCC
Q 003201 285 FLHLTL-SMTDVHQQVYE--RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP 334 (840)
Q Consensus 285 il~l~~-~~~~~~~~~l~--rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p 334 (840)
++.+-. ..+.++.++++ +....+.+.|...++++--.+|..+..=+-..+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~ 190 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDS 190 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCC
Confidence 776643 34445555553 245566777776677777777777765443333
No 226
>PF12825 DUF3818: Domain of unknown function in PX-proteins (DUF3818); InterPro: IPR024554 The function of this domain is not known, but it is almost always found C-terminal to a PX-domain (IPR001683 from INTERPRO).
Probab=37.85 E-value=6.3e+02 Score=28.40 Aligned_cols=184 Identities=16% Similarity=0.167 Sum_probs=85.1
Q ss_pred CCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCch-hHHHHHHHHHHHHHHhhcCCC--chhHHHHHHHHHHH
Q 003201 253 PLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTD-VHQQVYERIKAPLLTLVSSGS--PEQSYAVLSHLHIL 329 (840)
Q Consensus 253 p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~-~~~~~l~rl~~~L~~lLss~~--~nirY~aL~~l~~l 329 (840)
-.|..+..+.++.+...+.. ..+++++++.+++.+....+ +..+..+.=.+.++..|.+.+ |.+.=..+..+..-
T Consensus 106 ~~d~~~~~k~i~~le~~i~~--~~~~~~~ik~~v~~~~~~~~~ir~~s~~~~~~iv~~IL~~~~~~p~L~~~~~~~v~~s 183 (341)
T PF12825_consen 106 NDDIKEFEKEIDKLEKKIGD--SPEMCEKIKAFVYAPREEKDEIREESEEENEDIVVAILRSSDIEPKLSPEQLQRVLES 183 (341)
T ss_pred hhhHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 34555566666666665544 67888999988874322111 111111111123444554433 44443333333221
Q ss_pred HhhCCCcc---------cc-cccEEE-EccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 003201 330 VMRAPFIF---------AS-DYKHFY-CQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVG 398 (840)
Q Consensus 330 ~~~~p~~~---------~~-~~~~f~-c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~ 398 (840)
-..+-... .. .-..|. |+.==-.++|.+==+.+..+..+....++++++..-. -+-+++ |-+.+
T Consensus 184 y~~~~~~~~~~~~~~~~~~~~a~lf~~lk~yl~l~~r~RDk~~~~~l~~e~~~~qllkd~v~if---Yepl~r--v~k~a 258 (341)
T PF12825_consen 184 YKAWKNAVESVPDDDGEENEDAWLFSDLKEYLKLYLRKRDKEQMIQLWCEPELTQLLKDLVTIF---YEPLVR--VHKAA 258 (341)
T ss_pred HHHHHHhhhccccCCCccchhhHHHHHHHHHHHHHHHHhhHHHHHHHHcChhHHHHHHHHHHHH---HHHHHH--HHHhc
Confidence 11100000 00 000000 0000002333333344444444455555555554321 122333 44455
Q ss_pred HHHhhcCChHHHHHHHHHHhhhcC----chhhHHHHHHHHHHHhhCCCc
Q 003201 399 KIALQQYDVNAIVDRLLQFLEMEK----DYVTAEALVLVKDLLRKYPQW 443 (840)
Q Consensus 399 ~la~k~~~~~~~v~~Ll~LL~~~~----~~v~~e~v~~i~~il~~~p~~ 443 (840)
.+...+.+.+.+++-|+++++... ..-...++..+.++++++.+.
T Consensus 259 ~l~~~l~d~q~Fi~DlI~~~~~~~~~~~~~~~~~~V~~~v~Ll~rH~~~ 307 (341)
T PF12825_consen 259 DLSEALSDFQKFIDDLIKLVEKLRNGSGSSDPFPSVEDFVDLLDRHEQS 307 (341)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHH
Confidence 566666666778888888776422 122356677888899887653
No 227
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=37.50 E-value=2.5e+02 Score=30.52 Aligned_cols=73 Identities=12% Similarity=0.075 Sum_probs=50.1
Q ss_pred hhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcc----cCCCch----HHHHHHHhc--------CCChhHHH
Q 003201 130 ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC----IDADFP----PTLKHLMLN--------DPDPQVVA 193 (840)
Q Consensus 130 ~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~----~~~~~~----~~L~~lLL~--------D~d~~Vv~ 193 (840)
.+...-+.|++..++.|.++.+|..++.++.++....|... .+.++. +.+..+ +. |..+.++.
T Consensus 114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~-L~~LP~~tp~~~s~~Ll~ 192 (282)
T PF10521_consen 114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPC-LYYLPPITPEDESLELLQ 192 (282)
T ss_pred HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHH-hhcCCCCCCchhhHHHHH
Confidence 45667889999999999999999999999999998766543 223322 334443 23 44455555
Q ss_pred HHHHHHHHHH
Q 003201 194 NCLSALQEIW 203 (840)
Q Consensus 194 ~al~~L~eI~ 203 (840)
.|..++..+.
T Consensus 193 ~ay~~L~~L~ 202 (282)
T PF10521_consen 193 AAYPALLSLL 202 (282)
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 228
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=37.34 E-value=5.2e+02 Score=31.65 Aligned_cols=165 Identities=11% Similarity=0.031 Sum_probs=112.3
Q ss_pred CCCccchhhhhhh---hccCCCcchHHHHHHHHHHhccCCCchHH--HHHHHHHhhcCCC--ChhhHhHHHHHhhCCChh
Q 003201 58 GIDVSAVFGEMVM---CSATSDIVLKKMCYLYVGNYAKVNPDLAL--LTINFLQRDCKDE--DPMIRGLALRSLCSLRVA 130 (840)
Q Consensus 58 G~DvS~lF~~Vi~---l~~S~d~~~KkL~YLyl~~~~~~~~dl~l--L~iNtl~KDl~~~--Np~ir~LALr~l~~I~~~ 130 (840)
|-=.+.-|.+++. -+..++-++|+=-+-.+..-.+.-||-.. .+.+-+.-++.-. -..+....+..--.+..+
T Consensus 246 ~gff~n~fvd~~~fLeel~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~ 325 (690)
T KOG1243|consen 246 GGFFRNDFVDTLLFLEELRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEE 325 (690)
T ss_pred cccccchHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhcccc
Confidence 4333344666643 45677888888888888776666666322 4455555555433 244445555555556677
Q ss_pred hhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhh-cCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCc
Q 003201 131 NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAST 209 (840)
Q Consensus 131 ~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~-~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~ 209 (840)
++...+.+.|.++...++--||=.=..-+-+.... .++.+ +....+.+..- +.|.|+.++..++..+..+...
T Consensus 326 eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~-~d~I~phv~~G-~~DTn~~Lre~Tlksm~~La~k---- 399 (690)
T KOG1243|consen 326 EYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQIL-NDQIFPHVALG-FLDTNATLREQTLKSMAVLAPK---- 399 (690)
T ss_pred ccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhh-cchhHHHHHhh-cccCCHHHHHHHHHHHHHHHhh----
Confidence 88889999999999999999998877777776644 44444 45667777665 5899999999998888776531
Q ss_pred chHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCC
Q 003201 210 SEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVP 253 (840)
Q Consensus 210 ~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p 253 (840)
+++. =++..+|+.|+++.+
T Consensus 400 -----------L~~~--------------~Ln~Ellr~~ar~q~ 418 (690)
T KOG1243|consen 400 -----------LSKR--------------NLNGELLRYLARLQP 418 (690)
T ss_pred -----------hchh--------------hhcHHHHHHHHhhCc
Confidence 2210 156789999999988
No 229
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.00 E-value=2.1e+02 Score=36.75 Aligned_cols=109 Identities=22% Similarity=0.210 Sum_probs=75.1
Q ss_pred CCchHHHHHHHHHhhc-----CCCChhhHhHHHHHhhCC----ChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Q 003201 94 NPDLALLTINFLQRDC-----KDEDPMIRGLALRSLCSL----RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYH 164 (840)
Q Consensus 94 ~~dl~lL~iNtl~KDl-----~~~Np~ir~LALr~l~~I----~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~ 164 (840)
+.|..--++|.+-+-+ .|-.|.||+--+..||.= ..-=+-......+.=.|+|++.-||++.+-++.++|.
T Consensus 276 ~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e 355 (1048)
T KOG2011|consen 276 QQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYE 355 (1048)
T ss_pred HHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHh
Confidence 3344445666666665 688999999999998852 2222344556667778999999999999999999998
Q ss_pred hcCCcccC----CCchHHHHHHHhcCCChhHHHHHHHHHHHH
Q 003201 165 ISAPTCID----ADFPPTLKHLMLNDPDPQVVANCLSALQEI 202 (840)
Q Consensus 165 ~~p~~~~~----~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI 202 (840)
.+...-.- ..|-+++.++...|.|++|.+.++..+...
T Consensus 356 ~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~ 397 (1048)
T KOG2011|consen 356 KDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLL 397 (1048)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 84332111 234456666533678888888777766554
No 230
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=36.72 E-value=2.2e+02 Score=28.54 Aligned_cols=93 Identities=22% Similarity=0.243 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHH
Q 003201 42 DSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLAL 121 (840)
Q Consensus 42 ~~kk~~lkKlI~~m~lG~DvS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LAL 121 (840)
..-|+.+.|-=++... . ...++-+++.+.=++....+=.|-.+..-...+++-++ .-|-... +++.||..|+
T Consensus 28 ~~ek~llW~~R~~l~~-~--p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~aL---eLL~~~f--~~~~VR~yAV 99 (166)
T cd00870 28 DEEKDLIWKFRFYLTN-N--KKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIEDAL---ELLSPYF--TNPVVRKYAV 99 (166)
T ss_pred HHHHHHHHHhHHHHhh-C--cHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHHHH---HHcCccC--CCHHHHHHHH
Confidence 3456666665444432 2 33455666666556666666677677766666666544 2222222 3699999999
Q ss_pred HHhhCCChhhhHHHHHHHHHh
Q 003201 122 RSLCSLRVANLVEYLVGPLGL 142 (840)
Q Consensus 122 r~l~~I~~~~i~e~l~~~v~~ 142 (840)
+.|......++..++..-|+.
T Consensus 100 ~~L~~~sd~eL~~yL~QLVQa 120 (166)
T cd00870 100 SRLKLASDEELLLYLLQLVQA 120 (166)
T ss_pred HHHHhCCHHHHHHHHHHHHHH
Confidence 999999999988887766554
No 231
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=35.81 E-value=1.3e+02 Score=34.00 Aligned_cols=90 Identities=13% Similarity=0.004 Sum_probs=65.2
Q ss_pred hhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCC--------ChhhhHHHHHHHH
Q 003201 69 VMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL--------RVANLVEYLVGPL 140 (840)
Q Consensus 69 i~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I--------~~~~i~e~l~~~v 140 (840)
.|.-.-.+-.++.=+-|-+|-...++||..--++-++.|=+++.||.|.-+||..+..+ |.+--.......+
T Consensus 14 ~KAT~e~nT~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el 93 (462)
T KOG2199|consen 14 EKATDEKNTSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTEL 93 (462)
T ss_pred HHhcCcccccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHH
Confidence 34444444555566667788888999999999999999999999999999999887654 2223345566677
Q ss_pred HhccC-CCChHHHHHHHHH
Q 003201 141 GLGLK-DNNSYVRTVAVIG 158 (840)
Q Consensus 141 ~~~L~-d~~pyVRK~Aala 158 (840)
++++. ..+|-|+++-..-
T Consensus 94 ~al~~~~~h~kV~~k~~~l 112 (462)
T KOG2199|consen 94 RALIESKAHPKVCEKMRDL 112 (462)
T ss_pred HHHHhhcccHHHHHHHHHH
Confidence 77777 4578888775443
No 232
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=35.58 E-value=9e+02 Score=29.49 Aligned_cols=126 Identities=16% Similarity=0.095 Sum_probs=70.1
Q ss_pred HHHHHhhCCCcchhHHHHHHhhhc-ccCCchHHHHHHHHHHcCcCCCCC-----ChHHHHHHHHHhhccCCcHHHHHHHH
Q 003201 433 VKDLLRKYPQWSHDCIAVVGSISS-QNVQEPKAKAALIWMLGEYSQDMQ-----DAPYILESLTENWEEEPSAEVRLHLL 506 (840)
Q Consensus 433 i~~il~~~p~~~~~~~~~l~~l~~-~~i~~~~ak~a~iwilGEy~~~i~-----~~~~il~~l~~~~~~e~~~~vk~~lL 506 (840)
....+|.-++--+.+..++.-+.. +..-...+..|++-++=||++.-. +..+.+..+.. +-+ ..+|.-.+
T Consensus 407 sV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~---~~~-~n~r~~~~ 482 (678)
T KOG1293|consen 407 SVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLT---DPD-FNSRANSL 482 (678)
T ss_pred HHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhc---CCC-chHHHHHH
Confidence 345566665543333222222211 111223345677778888887532 23344444333 333 67786666
Q ss_pred HHHhHHhhcCChhH-----HHHHHHHHHhhccCCChHHHhHHHHHHHHccCCHHHHHhhcC
Q 003201 507 TAVMKCFFKRPPET-----QKVLGAALAAGLADFHQDVHDRALFYHRLLQYNVSVAERVVN 562 (840)
Q Consensus 507 ta~~Kl~~~~p~e~-----~~~l~~vL~~~~~d~d~dVrdRA~~Y~rLL~~~~~~a~~vv~ 562 (840)
-.+=-+.+...++. +++-.+.+....+|.|++||+.+....|=|..+-+..-.+++
T Consensus 483 ~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll 543 (678)
T KOG1293|consen 483 WVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLL 543 (678)
T ss_pred HHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHH
Confidence 66655555544332 233345555667899999999999988888777444444444
No 233
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=34.77 E-value=1.7e+02 Score=33.21 Aligned_cols=123 Identities=14% Similarity=0.113 Sum_probs=62.9
Q ss_pred HHHHHHHHH-HHhhcCCcccCCCchHHHHHHHhc------CCChhHHHHHHHHHHHHHhhccCcchH--HH---HHHHhh
Q 003201 153 TVAVIGVLK-LYHISAPTCIDADFPPTLKHLMLN------DPDPQVVANCLSALQEIWSLEASTSEE--AS---REREAL 220 (840)
Q Consensus 153 K~Aala~~k-l~~~~p~~~~~~~~~~~L~~lLL~------D~d~~Vv~~al~~L~eI~~~~~~~~~~--~~---~~~~~l 220 (840)
|+||.-++| +.+..++.+. +-+...+..+ +. ..|..-.=.|+.++..|+.+..+.... .. .+....
T Consensus 228 R~AA~dfl~~L~~~~~~~v~-~i~~~~i~~~-l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~F 305 (370)
T PF08506_consen 228 RRAACDFLRSLCKKFEKQVT-SILMQYIQQL-LQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDF 305 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHH
T ss_pred HHHHHHHHHHHHHHHhHHHH-HHHHHHHHHH-HHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHH
Confidence 346666654 5555555441 1223445554 33 345555667888888776543210000 00 011111
Q ss_pred ccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHhccCChHHH
Q 003201 221 ISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL-DSNEIFDIMNLLEDRLQHANGAVV 278 (840)
Q Consensus 221 i~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~-~~~e~~~il~~l~~~L~~~n~aVv 278 (840)
+...++..|- .-....||++...++++..|.-. +++....+++.+...|++.+..|-
T Consensus 306 f~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~ 363 (370)
T PF08506_consen 306 FSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVH 363 (370)
T ss_dssp HHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHH
T ss_pred HHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchh
Confidence 1111222222 11256899999999999988533 345667788888889988776553
No 234
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=34.14 E-value=5.4e+02 Score=26.53 Aligned_cols=129 Identities=13% Similarity=-0.022 Sum_probs=70.2
Q ss_pred hhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCC--ChhhhHHHHHHHHHhccCC
Q 003201 69 VMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL--RVANLVEYLVGPLGLGLKD 146 (840)
Q Consensus 69 i~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I--~~~~i~e~l~~~v~~~L~d 146 (840)
-.+..++-.+.+-++-.++....+.-.+..+-.+-.+..+. +.=..+=++|-+.++.+ ..++ +.+.+.+-..|
T Consensus 52 ~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~~~~~~~~l~~~-~~Wd~vD~~~~~i~g~~~~~~~~----~~~~l~~W~~s 126 (208)
T cd07064 52 LELWQQPEREYQYVAIDLLRKYKKFLTPEDLPLLEELITTK-SWWDTVDSLAKVVGGILLADYPE----FEPVMDEWSTD 126 (208)
T ss_pred HHHHcchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCC-chHHHHHHHHHHHhHHHHhCChh----HHHHHHHHHcC
Confidence 34777777777777666665543332222222222233332 22223334555554432 2222 24556777789
Q ss_pred CChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Q 003201 147 NNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (840)
Q Consensus 147 ~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~ 207 (840)
.+.++||.|+++.++.-+. .+ . ..+...+..+ +.|++--|.-+.==+|-|+.+.++
T Consensus 127 ~~~W~rR~ai~~~l~~~~~-~~-~--~~l~~~~~~~-~~d~e~fI~KAiGW~LRe~~k~d~ 182 (208)
T cd07064 127 ENFWLRRTAILHQLKYKEK-TD-T--DLLFEIILAN-LGSKEFFIRKAIGWALREYSKTNP 182 (208)
T ss_pred CcHHHHHHHHHHHHHHHHc-cC-H--HHHHHHHHHh-CCChHHHHHHHHHHHHHHHhccCH
Confidence 9999999999987663332 22 1 1223334443 677777776665567788877655
No 235
>PF08563 P53_TAD: P53 transactivation motif; InterPro: IPR013872 The binding of this protein by regulatory proteins regulates p53 transcription activation. This entry is comprised of a single amphipathic alpha helix and contains a highly conserved motif [, ]. ; GO: 0005515 protein binding; PDB: 1YCQ_B 2Z5T_R 3DAB_B 3DAC_B 2Z5S_Q 2K8F_B 2L14_B 1YCR_B.
Probab=34.09 E-value=19 Score=24.24 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=12.7
Q ss_pred cCCCCChHHHHHHhhccCc
Q 003201 723 SKAILDPGTFQQKWRQLPI 741 (840)
Q Consensus 723 ~~~~l~~~~Fq~~W~~l~~ 741 (840)
.++.|+-++|+..|+.+++
T Consensus 6 ~~~PLSQeTF~~LW~~l~~ 24 (25)
T PF08563_consen 6 PELPLSQETFSDLWNLLPE 24 (25)
T ss_dssp -----STCCHHHHHHTSST
T ss_pred CCCCccHHHHHHHHHhccC
Confidence 3466888999999999875
No 236
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=33.87 E-value=3.9e+02 Score=24.77 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHH-HHHHHHHHHHHhhc
Q 003201 131 NLVEYLVGPLGLGLK-DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVV-ANCLSALQEIWSLE 206 (840)
Q Consensus 131 ~i~e~l~~~v~~~L~-d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv-~~al~~L~eI~~~~ 206 (840)
+++..+.|.+.++|. ...+-.|=.|.|-+..+-.+.|= .++.++.+.+.++.+..+.-. ..++.++.-+++..
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L---~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPL---SDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCC---cHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 467788888999998 77888888888888888876652 234444444444454444333 67777787777654
No 237
>PF13981 SopA: SopA-like central domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=33.80 E-value=2.8e+02 Score=26.87 Aligned_cols=51 Identities=10% Similarity=0.141 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhHHhhcCChhHH---HHHHHHHHhhccCCChHHHhHHHHHHHH
Q 003201 499 AEVRLHLLTAVMKCFFKRPPETQ---KVLGAALAAGLADFHQDVHDRALFYHRL 549 (840)
Q Consensus 499 ~~vk~~lLta~~Kl~~~~p~e~~---~~l~~vL~~~~~d~d~dVrdRA~~Y~rL 549 (840)
......+|..+.+.|.++|+-+- ..+..++..|....++++++.|...|.-
T Consensus 67 ~~~~~~~l~~~i~~F~r~pelm~~~N~~FIQ~i~~~~~~~~~~~k~~A~~LY~~ 120 (135)
T PF13981_consen 67 DKLNQAILNFFIDRFSRQPELMISNNGAFIQLIAQAMTHGDDEIKQKARDLYKK 120 (135)
T ss_dssp HHHHHHCHHHHHHHHHHTTTHHHHTHHHHHHHHHHHCC-TSCCCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHhCHhHHHHcccHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45666899999999999996432 3455666667777799999999876653
No 238
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=33.51 E-value=1.8e+02 Score=35.56 Aligned_cols=53 Identities=13% Similarity=0.239 Sum_probs=29.1
Q ss_pred cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHH---hccCChHHHHHHHHHHHhcc
Q 003201 235 EFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDR---LQHANGAVVLSTIKVFLHLT 289 (840)
Q Consensus 235 ~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~---L~~~n~aVvleaik~il~l~ 289 (840)
..+.--++.+|-.+..+. +.-+...+++.+.++ .+...+++++.+++++-.+.
T Consensus 440 tt~~~vkvn~L~c~~~l~--q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 440 TTNLYVKVNVLPCLAGLI--QRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred ccchHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 333444444444444443 233344444444444 45567899999999876553
No 239
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=33.27 E-value=2.7e+02 Score=38.28 Aligned_cols=139 Identities=17% Similarity=0.257 Sum_probs=0.0
Q ss_pred chHHHHHH--HhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhc------------------
Q 003201 175 FPPTLKHL--MLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK------------------ 234 (840)
Q Consensus 175 ~~~~L~~l--LL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~------------------ 234 (840)
|++.|..+ +..|.++-|...|+..|.+|....+..+ -++.|..+-..++..++..+.
T Consensus 1345 W~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~F---s~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~ 1421 (1780)
T PLN03076 1345 WFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLF---SLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDG 1421 (1780)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccC---CHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccc
Q ss_pred -----cCChhH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhc-cCCCchhHHHHHH
Q 003201 235 -----EFSEWA-------QCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHL-TLSMTDVHQQVYE 301 (840)
Q Consensus 235 -----~~~~W~-------Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l-~~~~~~~~~~~l~ 301 (840)
+.+.|. --.+++++..|...=.....++++.+..++...|-.+.--++.++.++ ..+......+...
T Consensus 1422 ~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~ 1501 (1780)
T PLN03076 1422 DQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWL 1501 (1780)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHH
Q ss_pred HHHHHHHHhhcCCCc
Q 003201 302 RIKAPLLTLVSSGSP 316 (840)
Q Consensus 302 rl~~~L~~lLss~~~ 316 (840)
++...+..+....-|
T Consensus 1502 ~i~~~~~~lf~~T~p 1516 (1780)
T PLN03076 1502 EVVLSLKEAANATLP 1516 (1780)
T ss_pred HHHHHHHHHHHHhCC
No 240
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=32.65 E-value=3.5e+02 Score=31.03 Aligned_cols=80 Identities=18% Similarity=0.336 Sum_probs=51.7
Q ss_pred HHHHHcCcCCCCCC-hHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhh-cCChhHHHHHH---HHHHhhccCCChHHHhH
Q 003201 468 LIWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFF-KRPPETQKVLG---AALAAGLADFHQDVHDR 542 (840)
Q Consensus 468 ~iwilGEy~~~i~~-~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~-~~p~e~~~~l~---~vL~~~~~d~d~dVrdR 542 (840)
+.|++-+|.+.-+. ++.+++.+++-|.... .....++|.-+--++- ..|.+.|.... +.+..|.+|.+.-|-+|
T Consensus 282 LaYcivQfveKd~kl~~~VIrglLK~WP~tn-S~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~HFQVAEr 360 (457)
T KOG2085|consen 282 LAYCIVQFVEKDPKLTETVIRGLLKYWPKTN-SSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPHFQVAER 360 (457)
T ss_pred cceeeeeeeccCccccHHHHHHHHHhcCCCC-CcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChhHHHHHH
Confidence 45666666554332 6788888888887765 4444455544444432 24555554433 34457788999999999
Q ss_pred HHHHHH
Q 003201 543 ALFYHR 548 (840)
Q Consensus 543 A~~Y~r 548 (840)
|.+||.
T Consensus 361 aL~~wn 366 (457)
T KOG2085|consen 361 ALYLWN 366 (457)
T ss_pred HHHHHh
Confidence 999997
No 241
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.35 E-value=7.8e+02 Score=29.94 Aligned_cols=160 Identities=15% Similarity=0.170 Sum_probs=80.5
Q ss_pred HHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh-hcCCcccCC------------------------
Q 003201 119 LALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYH-ISAPTCIDA------------------------ 173 (840)
Q Consensus 119 LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~-~~p~~~~~~------------------------ 173 (840)
+|.-+.+-+..|+=--.....|...+.+.+|-+||-|.+++..+|+ +-|.....+
T Consensus 194 IA~l~s~llenPE~N~~~L~~l~eml~s~n~~~~Kl~~lSLlaVFKDIiP~YkIR~lte~Ek~~k~sKev~klr~yE~~L 273 (704)
T KOG2153|consen 194 IASLCSKLLENPEENLKKLKELFEMLDSQNPKAKKLALLSLLAVFKDIIPGYKIRPLTEKEKRTKLSKEVLKLREYEQAL 273 (704)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhcccceecccHHHHhcccccHHHHHHHHHHHHH
Confidence 3444444445555445556667777788888889999888888885 344432110
Q ss_pred -----CchHHHHHHHhcCC---ChhH---HHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHH
Q 003201 174 -----DFPPTLKHLMLNDP---DPQV---VANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQC 242 (840)
Q Consensus 174 -----~~~~~L~~lLL~D~---d~~V---v~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi 242 (840)
.++..+..+ ..|. +|.- -.-|+..++++....|. +-++..++.-++..+++...-.-.
T Consensus 274 l~~Yk~ylQkLe~~-vK~~~~~~~~~v~l~~vav~c~~~Ll~a~pH----------FN~~~kiv~l~vr~in~~~~~~s~ 342 (704)
T KOG2153|consen 274 LKQYKSYLQKLEQF-VKDLSLRTPQQVSLAQVAVQCACELLEAVPH----------FNLRQKIVKLVVRLINDPGRPVSS 342 (704)
T ss_pred HHHHHHHHHHHHHH-HhhhhhcchHHHHHHHHHHHHHHHHHHhhhh----------ccHHHHHHHHHHHhhcCCCCchHH
Confidence 022233332 2222 2211 12333444444332221 001111222233334445455556
Q ss_pred HHHHHHHhcCCCCh--hHHHHHHHHHHHHhccCChHHHHHHHHHHHhcc
Q 003201 243 LVLELVAKYVPLDS--NEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLT 289 (840)
Q Consensus 243 ~iL~lL~~y~p~~~--~e~~~il~~l~~~L~~~n~aVvleaik~il~l~ 289 (840)
-+++.+..|.-.|. .-+..++..+...++..|.-|.-+++.+++.+.
T Consensus 343 ~~i~t~k~lf~~D~~g~~sl~~Vr~i~~llK~rn~~v~~~~~~~~lsLr 391 (704)
T KOG2153|consen 343 GCIQTIKTLFENDNGGSGSLAIVRIINSLLKTRNYEVLPDMITTFLSLR 391 (704)
T ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHHHhhhhcccchhhHHHHHHhcc
Confidence 66666666554443 223455556666666666667777777776664
No 242
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=32.34 E-value=2.1e+02 Score=31.03 Aligned_cols=38 Identities=32% Similarity=0.404 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCC
Q 003201 298 QVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF 335 (840)
Q Consensus 298 ~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~ 335 (840)
+.+..+.++++.++.+.++++|.-|++.+..++.+.|.
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~ 152 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPA 152 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCCh
Confidence 45677899999999999999999999999999987663
No 243
>PF14961 BROMI: Broad-minded protein
Probab=32.16 E-value=8.3e+02 Score=32.04 Aligned_cols=72 Identities=21% Similarity=0.273 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcC--ChhHHHHHHHHHHhhccCCChHHHhHHH-HHHHHccCCH
Q 003201 483 PYILESLTENWEEEPSAEVRLHLLTAVMKCFFKR--PPETQKVLGAALAAGLADFHQDVHDRAL-FYHRLLQYNV 554 (840)
Q Consensus 483 ~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~--p~e~~~~l~~vL~~~~~d~d~dVrdRA~-~Y~rLL~~~~ 554 (840)
.+-++.++++.....+.+||...+..+.|..... ..|.-+.+++-|..+..|.|+.+.|++. +|.++++..|
T Consensus 160 qe~lq~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSp 234 (1296)
T PF14961_consen 160 QEQLQLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSP 234 (1296)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCc
Confidence 4556888888877766999999999999876432 2345678888899999999999999996 5668888863
No 244
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=31.71 E-value=4.2e+02 Score=26.04 Aligned_cols=94 Identities=20% Similarity=0.257 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHH
Q 003201 41 DDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLA 120 (840)
Q Consensus 41 ~~~kk~~lkKlI~~m~lG~DvS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LA 120 (840)
....++.+.+.-++.... ....+.++..+..++....+=.|-.+..-...+|+- +..-|..... |+.||.-|
T Consensus 20 ~~~ek~llw~~R~~~~~~---p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~---aL~LL~~~~~--~~~vr~yA 91 (152)
T cd00864 20 TEEEKELLWKFRYYLLNV---PKALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPED---ALELLSPKYP--DPVVRQYA 91 (152)
T ss_pred CHHHHHHHHHHHHHHhhC---hHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHH---HHHHcCCcCC--CHHHHHHH
Confidence 356788888877766532 234677777777788777777777777766666655 4444555444 49999999
Q ss_pred HHHhhCCChhhhHHHHHHHHHh
Q 003201 121 LRSLCSLRVANLVEYLVGPLGL 142 (840)
Q Consensus 121 Lr~l~~I~~~~i~e~l~~~v~~ 142 (840)
++.|.+....++.-++-.-|+.
T Consensus 92 v~~L~~~~~~~l~~ylpQLVQa 113 (152)
T cd00864 92 VRVLESASDDELLLYLPQLVQA 113 (152)
T ss_pred HHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999988887776665554
No 245
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=31.34 E-value=3.8e+02 Score=25.44 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCC-chhHHHHHH-HHHHHHHHhhcC---CCchhHHHHHHHHHHHH
Q 003201 256 SNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM-TDVHQQVYE-RIKAPLLTLVSS---GSPEQSYAVLSHLHILV 330 (840)
Q Consensus 256 ~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~-~~~~~~~l~-rl~~~L~~lLss---~~~nirY~aL~~l~~l~ 330 (840)
+....+.+..|..+|++.|+.|.+-|+.++-.+..+- ..++.++-. +...-|.+++.. .+++++--+|+.+....
T Consensus 32 ~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 32 PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 3445667788999999999999999888765554332 224433332 222335566643 35566666666666555
Q ss_pred hh
Q 003201 331 MR 332 (840)
Q Consensus 331 ~~ 332 (840)
..
T Consensus 112 ~~ 113 (133)
T cd03561 112 ES 113 (133)
T ss_pred HH
Confidence 44
No 246
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=31.33 E-value=2.6e+02 Score=25.19 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=43.6
Q ss_pred HhhhcCCHHHHHHHHHHHHHHHhhcCC-----hHHHHHHHHHHhhhcCchhhHHHHHHHHHHHh
Q 003201 380 EYAANVDIPIARESIRAVGKIALQQYD-----VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLR 438 (840)
Q Consensus 380 ~y~~~~d~~~~~~~i~aI~~la~k~~~-----~~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~ 438 (840)
+|+...+ +=+.+++..+-..+.+.++ ..+|+.++-+++..+.+|+..| +.++..|+.
T Consensus 12 ~f~~~~~-~~~~~i~~~~~~~~~~l~~~~~~~a~~Yvkvm~Ki~~~g~~fv~~E-~~RL~~lL~ 73 (95)
T PF07749_consen 12 EFVAASD-DEREEILEEAKAAAEKLEDSAAKYAKYYVKVMEKIIEKGEEFVAKE-IARLERLLE 73 (95)
T ss_dssp HHHHS-C-HHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHHHHHHSGTHHHHHH-HHHHHHHHH
T ss_pred HHHcCcH-HHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHHccchHHHHH-HHHHHHHHh
Confidence 5655555 6677788888888877764 3579999999999988999999 578888887
No 247
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=30.54 E-value=66 Score=23.03 Aligned_cols=27 Identities=22% Similarity=0.042 Sum_probs=20.6
Q ss_pred HHHHHHhccCCCChHHHHHHHHHHHHH
Q 003201 136 LVGPLGLGLKDNNSYVRTVAVIGVLKL 162 (840)
Q Consensus 136 l~~~v~~~L~d~~pyVRK~Aala~~kl 162 (840)
.++.+.+++.+.++.|++.|+.++..+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 455667777778888998888888765
No 248
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=30.45 E-value=8.4e+02 Score=27.59 Aligned_cols=214 Identities=16% Similarity=0.089 Sum_probs=106.7
Q ss_pred hhHhHHHHHhhC------CChhhhHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHhhcCCcccC--CCchHHHHHHHhc
Q 003201 115 MIRGLALRSLCS------LRVANLVEYLVGPLGLGLK-DNNSYVRTVAVIGVLKLYHISAPTCID--ADFPPTLKHLMLN 185 (840)
Q Consensus 115 ~ir~LALr~l~~------I~~~~i~e~l~~~v~~~L~-d~~pyVRK~Aala~~kl~~~~p~~~~~--~~~~~~L~~lLL~ 185 (840)
.+...+|.+++. +.+.+..+.+...+...-. =++.-|=--+..++-++...+|+.+.. ..|.+.+...| -
T Consensus 107 ~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l-~ 185 (372)
T PF12231_consen 107 SICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDL-L 185 (372)
T ss_pred HHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 444444555443 2234444444444433322 234456666788888899999987632 34888888774 5
Q ss_pred CCChhHHHHHHHHHHHHHhhccCcchHHHHHHHh-----hccHHHHHH----HHHhhcc---CChhHHH--HHHHHHHhc
Q 003201 186 DPDPQVVANCLSALQEIWSLEASTSEEASREREA-----LISKPVIYY----LLNRIKE---FSEWAQC--LVLELVAKY 251 (840)
Q Consensus 186 D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~-----li~~~~~~~----Ll~~l~~---~~~W~Qi--~iL~lL~~y 251 (840)
+....+...|+.++.++...=+. .......... +.+...+.. |-..+.+ .-.|.|+ .++.+|+.-
T Consensus 186 ~~~k~ir~~a~~l~~~~~~~l~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~ 264 (372)
T PF12231_consen 186 SSAKDIRTKAISLLLEAKKCLGP-NKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSS 264 (372)
T ss_pred hcchHHHHHHHHHHHHHHHHhCh-hHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCc
Confidence 66777777788777777532111 0000110000 111111111 1111222 1122221 112222110
Q ss_pred CCCChhHHHHHHHHHHHHhccCChHHHHHHHHH---HHhccCCCchhHHHHHHHHHHHHHHhhcC-CCc----hhHHHHH
Q 003201 252 VPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKV---FLHLTLSMTDVHQQVYERIKAPLLTLVSS-GSP----EQSYAVL 323 (840)
Q Consensus 252 ~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~---il~l~~~~~~~~~~~l~rl~~~L~~lLss-~~~----nirY~aL 323 (840)
.-..-+...+.+.....+.++.++++-.+|.++ +++............++-+..|+..-+.. ..+ +++-.++
T Consensus 265 ~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll 344 (372)
T PF12231_consen 265 RLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLL 344 (372)
T ss_pred hhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHH
Confidence 112233455677777888899999887776654 55543332222234455566788666643 223 5566666
Q ss_pred HHHHHHH
Q 003201 324 SHLHILV 330 (840)
Q Consensus 324 ~~l~~l~ 330 (840)
..+.-++
T Consensus 345 ~~l~~ll 351 (372)
T PF12231_consen 345 YSLCNLL 351 (372)
T ss_pred HHHhchH
Confidence 6665554
No 249
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=30.35 E-value=71 Score=21.56 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=19.0
Q ss_pred hHhHHHHHhhCCChhhhHHHHHHHH
Q 003201 116 IRGLALRSLCSLRVANLVEYLVGPL 140 (840)
Q Consensus 116 ir~LALr~l~~I~~~~i~e~l~~~v 140 (840)
+|.-|.+.|+.|+.++-++.+...+
T Consensus 1 VR~~Aa~aLg~igd~~ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 6888999999999987777766554
No 250
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.13 E-value=2.2e+02 Score=32.37 Aligned_cols=63 Identities=24% Similarity=0.199 Sum_probs=48.5
Q ss_pred HHhccCCCChHHHHHHHHHHHHHHhhcCCccc--CCCchHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 003201 140 LGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (840)
Q Consensus 140 v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~--~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~ 203 (840)
+..-+.|.+.-|||.|..++-.++..+|+.+. -...++.+..+ ..|.|..|....+.++..+.
T Consensus 63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~-i~D~~~~vR~~~~qll~~~i 127 (393)
T KOG2149|consen 63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLREL-ILDDDSLVRDALYQLLDSLI 127 (393)
T ss_pred HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhh-hcCccccHHHHHHHHHHHHH
Confidence 34457899999999999999999998888652 12345566665 57999999988888887754
No 251
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=29.55 E-value=2e+02 Score=35.52 Aligned_cols=86 Identities=16% Similarity=0.081 Sum_probs=55.3
Q ss_pred HHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcc---cCCCchHHHHHHHhcCCChhHHHHH
Q 003201 119 LALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVVANC 195 (840)
Q Consensus 119 LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~---~~~~~~~~L~~lLL~D~d~~Vv~~a 195 (840)
.|+..|++++.|- ...++..+-..+.. |--|..|+.-+..+.+..|.-+ .+..++..|.++|..|.|..|+..|
T Consensus 55 ~~~~il~~~~~P~-~K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~a 131 (668)
T PF04388_consen 55 RALEILVGVQEPH-DKHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSA 131 (668)
T ss_pred HHHHHHHhcCCcc-HHHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHH
Confidence 4566666776661 11223333333433 3456666666677788777654 2445666666666789999999999
Q ss_pred HHHHHHHHhhcc
Q 003201 196 LSALQEIWSLEA 207 (840)
Q Consensus 196 l~~L~eI~~~~~ 207 (840)
+.+|.-+..+-|
T Consensus 132 l~~LimlLP~ip 143 (668)
T PF04388_consen 132 LLVLIMLLPHIP 143 (668)
T ss_pred HHHHHHHhcccc
Confidence 999988876554
No 252
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=28.29 E-value=2.3e+02 Score=31.01 Aligned_cols=178 Identities=17% Similarity=0.198 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHHHHHhcCC--Cccc-----hhhhhh-hhccCCC-cchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCC
Q 003201 41 DDSKRELFKKVISYMTIGI--DVSA-----VFGEMV-MCSATSD-IVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKD 111 (840)
Q Consensus 41 ~~~kk~~lkKlI~~m~lG~--DvS~-----lF~~Vi-~l~~S~d-~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~ 111 (840)
.....+.+.+.+..|..+. .+.. +|-+.- -.+.+.+ |-..|+-|+.+.+.++. ... -++-+.+|.-
T Consensus 26 ~l~~L~~i~~~l~~l~~~~~~~i~~~~W~~~Fd~~WPlv~~~~~~yW~~R~~Fl~lLn~~~p--~~y--~~~~~~~DYf- 100 (292)
T PF13929_consen 26 SLDPLKSIVSTLSQLPQSTEKKINIENWKKFFDSHWPLVDPSETAYWSLRLKFLKLLNIADP--QNY--SVRRFINDYF- 100 (292)
T ss_pred hhHHHHHHHHHHHhCccccccccCHHHHHHHHHhcCCCCCCCccchHHHHHHHHHHHhhcCc--ccC--CHHHHHHHHH-
Confidence 3456667777777776655 3321 122221 2445566 89999999999888743 321 2233333321
Q ss_pred CChhhHhHHHHHhhC-CChhhhHHHHHHHHHhccCCCC----hHH-HHHHHHHHHHHHhh-cCC--cccCCCchHHHHHH
Q 003201 112 EDPMIRGLALRSLCS-LRVANLVEYLVGPLGLGLKDNN----SYV-RTVAVIGVLKLYHI-SAP--TCIDADFPPTLKHL 182 (840)
Q Consensus 112 ~Np~ir~LALr~l~~-I~~~~i~e~l~~~v~~~L~d~~----pyV-RK~Aala~~kl~~~-~p~--~~~~~~~~~~L~~l 182 (840)
+.=++||+ +...++++-+--.+.+...+++ ..| |-+-+.-.+++|+. +|+ .+.+++.+..|.+-
T Consensus 101 -------~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~s 173 (292)
T PF13929_consen 101 -------LLKKSMGCELTKEDLISFLKLVIINLSSNKSFNYWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKS 173 (292)
T ss_pred -------HHHHHcCCCCcHHHHHHHHHHHHhccccccchHHHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHHHHHH
Confidence 22344554 4556777777777777777775 678 44566778999984 776 66777777776655
Q ss_pred HhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHH
Q 003201 183 MLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQC 242 (840)
Q Consensus 183 LL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi 242 (840)
|..|.+. -+.+++|+...= +..+...++++++-.+++.|.+..+|-..
T Consensus 174 Mv~~~~~-----~l~alYEvV~~l-------~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 174 MVIDENT-----KLNALYEVVDFL-------VSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHhcccc-----chhhHHHHHHHH-------HhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 5565554 455667764310 11111234556677777777778888643
No 253
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=28.28 E-value=2.8e+02 Score=26.42 Aligned_cols=49 Identities=20% Similarity=0.211 Sum_probs=33.6
Q ss_pred HHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Q 003201 156 VIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (840)
Q Consensus 156 ala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~ 207 (840)
.+.+.-+.+..++.. .+.+..|++- +..+||.|+.-|+.+|..+.++.+
T Consensus 21 ~l~icD~i~~~~~~~--k~a~r~l~kr-l~~~n~~v~l~AL~lLe~~vkNcg 69 (133)
T smart00288 21 ILEICDLINSTPDGP--KDAVRLLKKR-LNNKNPHVALLALTLLDACVKNCG 69 (133)
T ss_pred HHHHHHHHhCCCccH--HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHCC
Confidence 344444445454433 3456667777 589999999999999988887544
No 254
>PHA03159 hypothetical protein; Provisional
Probab=27.52 E-value=72 Score=30.17 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=36.9
Q ss_pred hhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcc
Q 003201 124 LCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (840)
Q Consensus 124 l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~ 170 (840)
|++|+-..++|.+....+.+-...+..|| |+..+.+-|.+....+
T Consensus 1 mssi~fq~~ie~il~~cq~~~~~~dsivr--aihsvi~qynkfe~lm 45 (160)
T PHA03159 1 MSSIKFQKIIENILKECQDCHHQQDSIVR--AIHSVIHQYNKFEALM 45 (160)
T ss_pred CCcccHHHHHHHHHHHHHhcchhhhHHHH--HHHHHHHHHhhHHHhC
Confidence 67899999999999888888877888887 6778888887766655
No 255
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=27.14 E-value=3.4e+02 Score=26.40 Aligned_cols=59 Identities=25% Similarity=0.426 Sum_probs=41.8
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCcccccccEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHh
Q 003201 302 RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEY 381 (840)
Q Consensus 302 rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y 381 (840)
.+...+..+|.++++++|-+||+.|.. +.+| +|..-+ |-|..|.++++.. +||..+
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~-------------------~k~~-~l~pY~-d~L~~Lldd~~fr---deL~~f 72 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLT-------------------WKDP-YLTPYK-DNLENLLDDKTFR---DELTTF 72 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH-------------------hCcH-HHHhHH-HHHHHHcCcchHH---HHHHhh
Confidence 355567789999999999999999864 3333 454554 7788888887766 455555
Q ss_pred hhc
Q 003201 382 AAN 384 (840)
Q Consensus 382 ~~~ 384 (840)
..+
T Consensus 73 ~~~ 75 (141)
T PF07539_consen 73 NLS 75 (141)
T ss_pred ccc
Confidence 544
No 256
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=26.76 E-value=2.8e+02 Score=24.42 Aligned_cols=67 Identities=21% Similarity=0.219 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCChh---HHHHHHHHHHhhccCCChHHHhHHHHHHHH
Q 003201 483 PYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPE---TQKVLGAALAAGLADFHQDVHDRALFYHRL 549 (840)
Q Consensus 483 ~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e---~~~~l~~vL~~~~~d~d~dVrdRA~~Y~rL 549 (840)
.++|+.|..-+....+.+||..+|.++..+...+... +-+.+-.+|..+..+.+.++-..|+...++
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 3567766666555555899999999999998766543 345677788888888889999988876543
No 257
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=26.67 E-value=3.4e+02 Score=24.85 Aligned_cols=50 Identities=8% Similarity=-0.036 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCC
Q 003201 78 VLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL 127 (840)
Q Consensus 78 ~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I 127 (840)
....-..+.++.+...+++.+--++..|.|=++++||.+.-.||..|=.+
T Consensus 15 ~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~l 64 (115)
T cd00197 15 GPDWPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYC 64 (115)
T ss_pred CCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 33444555566666666777788999999999999999999998876543
No 258
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.62 E-value=9.2e+02 Score=26.83 Aligned_cols=61 Identities=23% Similarity=0.150 Sum_probs=45.3
Q ss_pred HHHHhhcCCCChhhHhHHHHHhhCCChh------hhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhh
Q 003201 103 NFLQRDCKDEDPMIRGLALRSLCSLRVA------NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI 165 (840)
Q Consensus 103 Ntl~KDl~~~Np~ir~LALr~l~~I~~~------~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~ 165 (840)
+.+.+=+.++||.+|..|++.+.++-.. .-.+..++.|.+++.++.| -.-|+-++.++...
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~ 72 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK 72 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh
Confidence 3455567789999999999888877554 2235677888899999888 55677777777654
No 259
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=26.57 E-value=4.7e+02 Score=26.54 Aligned_cols=93 Identities=19% Similarity=0.294 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHH
Q 003201 42 DSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLAL 121 (840)
Q Consensus 42 ~~kk~~lkKlI~~m~lG~DvS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LAL 121 (840)
..-|+.+.+-=++. .+. ...++.++..+.-.+....+-+|-.+......+|+- +..-|.+...| +.||..|+
T Consensus 27 ~~ek~~lW~~R~~l-~~~--p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~---AL~LL~~~f~~--~~VR~yAv 98 (184)
T PF00613_consen 27 EEEKELLWKYRYYL-MNN--PEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPED---ALELLSPNFPD--PFVRQYAV 98 (184)
T ss_dssp HHHHHHHHHTHHHH-TTS--GGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHH---HHHCTSTT-----HHHHHHHH
T ss_pred HHHHHHHHHCCHHh-hhC--chHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHH---HHHHHHhhccH--HHHHHHHH
Confidence 34466666654443 333 334777777777788888888888887777766655 44555555555 99999999
Q ss_pred HHhhCCChhhhHHHHHHHHHh
Q 003201 122 RSLCSLRVANLVEYLVGPLGL 142 (840)
Q Consensus 122 r~l~~I~~~~i~e~l~~~v~~ 142 (840)
+.|.++...++..++-.-|+.
T Consensus 99 ~~L~~~~d~~l~~yLpQLVQa 119 (184)
T PF00613_consen 99 RRLESLSDEELLFYLPQLVQA 119 (184)
T ss_dssp HHHCTS-HHHHHHHHHHHHHH
T ss_pred HHHHHcCchHHHHHHHHHHHH
Confidence 999998888877666555444
No 260
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=26.49 E-value=4.8e+02 Score=25.29 Aligned_cols=50 Identities=14% Similarity=0.070 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Q 003201 155 AVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (840)
Q Consensus 155 Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~ 207 (840)
..+-+.-+.+..+... .+.+..|++- +..+||.|+.-|+.+|..+.++.+
T Consensus 24 ~ileicD~In~~~~~~--k~a~ral~kr-l~~~n~~vql~AL~LLe~~vkNCG 73 (142)
T cd03569 24 SILEICDMIRSKDVQP--KYAMRALKKR-LLSKNPNVQLYALLLLESCVKNCG 73 (142)
T ss_pred HHHHHHHHHhCCCCCH--HHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHHCC
Confidence 3444444444444432 3456677777 588999999999999988877544
No 261
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=26.05 E-value=81 Score=21.49 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=18.3
Q ss_pred hhHhHHHHHhhCCChhhhHHHHHH
Q 003201 115 MIRGLALRSLCSLRVANLVEYLVG 138 (840)
Q Consensus 115 ~ir~LALr~l~~I~~~~i~e~l~~ 138 (840)
.+|-.|..+|++++.++-.+.+..
T Consensus 2 ~vR~~aa~aLg~~~~~~a~~~L~~ 25 (30)
T smart00567 2 LVRHEAAFALGQLGDEEAVPALIK 25 (30)
T ss_pred HHHHHHHHHHHHcCCHhHHHHHHH
Confidence 578889999999988776655443
No 262
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=26.03 E-value=8.5e+02 Score=26.24 Aligned_cols=80 Identities=21% Similarity=0.194 Sum_probs=55.5
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHhhc-CCh-HHHHHHHHHHhhhcCchhhHHHHH
Q 003201 357 LKLEMLTAVANESNTYEIVTELCEYAAN---VDIPIARESIRAVGKIALQQ-YDV-NAIVDRLLQFLEMEKDYVTAEALV 431 (840)
Q Consensus 357 ~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~---~d~~~~~~~i~aI~~la~k~-~~~-~~~v~~Ll~LL~~~~~~v~~e~v~ 431 (840)
..-+.|..+|...+...+-+=+..|+.. ...+|.+.+++.|.. .| |+. ...+..++++|+++..-+...+..
T Consensus 134 ~~A~~La~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~---~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~ 210 (262)
T PF14225_consen 134 EIAEALAQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQVVSYLRE---AFFPDHEFQILTFLLGLLENGPPWLRRKTLQ 210 (262)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 3336677777665555555555566554 346788888887753 44 654 458888999999888888888888
Q ss_pred HHHHHHhh
Q 003201 432 LVKDLLRK 439 (840)
Q Consensus 432 ~i~~il~~ 439 (840)
+++-++..
T Consensus 211 iL~~ll~~ 218 (262)
T PF14225_consen 211 ILKVLLPH 218 (262)
T ss_pred HHHHHhcc
Confidence 88877753
No 263
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=25.91 E-value=1e+02 Score=31.19 Aligned_cols=59 Identities=22% Similarity=0.306 Sum_probs=40.3
Q ss_pred hccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHH
Q 003201 90 YAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVR 152 (840)
Q Consensus 90 ~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVR 152 (840)
....+|.- +..-|..-.. .||.+|.-|+|+|-+....++.-|+-+-|+.+=-|...||+
T Consensus 65 W~pi~p~~---ALell~~~y~-~~~~Vr~yAvr~L~~~~~e~l~~YlpQLVQaLryd~~~~l~ 123 (175)
T cd00871 65 WAPVSPVQ---ALSLFTPQYP-GHPLVLQYAVRVLESYPVETVFFYIPQIVQALRYDKMGYVE 123 (175)
T ss_pred CCCCCHHH---HHHHhCcccC-CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccccchHH
Confidence 44555544 3444444333 58999999999999999999988887766654455555444
No 264
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=25.58 E-value=1.2e+02 Score=33.46 Aligned_cols=71 Identities=15% Similarity=0.358 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhccCChHH-HHHHHHHHHhccCCCchhHHHHHHH--HHHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 003201 260 FDIMNLLEDRLQHANGAV-VLSTIKVFLHLTLSMTDVHQQVYER--IKAPLLTLVSSGSPEQSYAVLSHLHILVM 331 (840)
Q Consensus 260 ~~il~~l~~~L~~~n~aV-vleaik~il~l~~~~~~~~~~~l~r--l~~~L~~lLss~~~nirY~aL~~l~~l~~ 331 (840)
..|+..+...+|+.++.. +--|..=+.++-...|+. ..++.+ .+..+..|++++++++||-||+++..++.
T Consensus 355 y~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~-~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 355 YEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEI-NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchH-HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 456777788888876542 111222223322222222 123332 44567889999999999999999987764
No 265
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=24.87 E-value=8.8e+02 Score=26.00 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHhhhcCC---HHHH-----HHHHHHHHHHHhhcCChHHHHHHHHHHhhhcC--------chhhHHHHHHH
Q 003201 370 NTYEIVTELCEYAANVD---IPIA-----RESIRAVGKIALQQYDVNAIVDRLLQFLEMEK--------DYVTAEALVLV 433 (840)
Q Consensus 370 Nv~~Iv~EL~~y~~~~d---~~~~-----~~~i~aI~~la~k~~~~~~~v~~Ll~LL~~~~--------~~v~~e~v~~i 433 (840)
+-+.|+.+|...+.+.- .++. .-.+-++..+|+.- ...+.+.++++++..+ +.++.+...++
T Consensus 28 ~~e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~r--e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~il 105 (249)
T PF06685_consen 28 QREEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFR--EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRIL 105 (249)
T ss_pred CHHHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHh--hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHH
Confidence 44556666666554411 1221 22466666677652 2357788888887654 33455555555
Q ss_pred HHHHhhCCCcchhHHHHHHhhhcccCCchHHHHHHHHHHcC---cCCCC-CChHHHHHHHHHhhccCCcHHHHHHHHHHH
Q 003201 434 KDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGE---YSQDM-QDAPYILESLTENWEEEPSAEVRLHLLTAV 509 (840)
Q Consensus 434 ~~il~~~p~~~~~~~~~l~~l~~~~i~~~~ak~a~iwilGE---y~~~i-~~~~~il~~l~~~~~~e~~~~vk~~lLta~ 509 (840)
..+....+ ..+.+++.+.-.+.-+|.+++=.++. .|..- +.....++.+++.+....+..+-..++..+
T Consensus 106 asv~~G~~-------~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~ 178 (249)
T PF06685_consen 106 ASVGDGDI-------EPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADI 178 (249)
T ss_pred HHHhCCCH-------HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 54443222 23444443322334455444333322 22221 224455666666644433255677777777
Q ss_pred hHHhhcCChhHHHHHHHHHHhhccC
Q 003201 510 MKCFFKRPPETQKVLGAALAAGLAD 534 (840)
Q Consensus 510 ~Kl~~~~p~e~~~~l~~vL~~~~~d 534 (840)
+-|+ |.|.-+.+.+++....-|
T Consensus 179 ~dL~---~~EL~~~I~~~f~~~lVd 200 (249)
T PF06685_consen 179 CDLY---PEELLPEIRKAFEDGLVD 200 (249)
T ss_pred HhcC---HHHhHHHHHHHHHcCCCC
Confidence 6664 666777778887765544
No 266
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=24.58 E-value=2e+02 Score=33.97 Aligned_cols=141 Identities=15% Similarity=0.085 Sum_probs=83.4
Q ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCC---cccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcch
Q 003201 135 YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSE 211 (840)
Q Consensus 135 ~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~---~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~ 211 (840)
.+.+.+.++|++|.--|.-.+..++....-.... -+.+.++++.|.++ +...|....++.+-++..+.-..-.
T Consensus 431 ~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~-v~sKDdaLqans~wvlrHlmyncq~--- 506 (743)
T COG5369 431 PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNL-VMSKDDALQANSEWVLRHLMYNCQK--- 506 (743)
T ss_pred chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHH-hhcchhhhhhcchhhhhhhhhcCcc---
Confidence 3556677788888888887777777654432222 22356788899987 5777888888888888766432111
Q ss_pred HHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCCh--hHHH----------HHHHHHHHHhccCChHHHH
Q 003201 212 EASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDS--NEIF----------DIMNLLEDRLQHANGAVVL 279 (840)
Q Consensus 212 ~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~--~e~~----------~il~~l~~~L~~~n~aVvl 279 (840)
.+...++.+--+.+++.-.+++.==.|..++++|+.+.-... ++.. -+...+.+.+...|+.-+.
T Consensus 507 ---~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~ 583 (743)
T COG5369 507 ---NEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEIL 583 (743)
T ss_pred ---hhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhh
Confidence 011122222225566665555544459999999998854211 1111 1334555566667776555
Q ss_pred HHH
Q 003201 280 STI 282 (840)
Q Consensus 280 eai 282 (840)
+.+
T Consensus 584 ~~~ 586 (743)
T COG5369 584 EGC 586 (743)
T ss_pred hhH
Confidence 543
No 267
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=24.21 E-value=2.5e+02 Score=33.28 Aligned_cols=86 Identities=20% Similarity=0.220 Sum_probs=63.0
Q ss_pred ChhhHhHHHHHhhCCCh-hhh-HHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChh
Q 003201 113 DPMIRGLALRSLCSLRV-ANL-VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQ 190 (840)
Q Consensus 113 Np~ir~LALr~l~~I~~-~~i-~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~ 190 (840)
...+..+|+-..+-|.. +++ .|.+...+-..+.-.++.+||.--+|..-++-.+|+. +..+.|.+. .+|.|..
T Consensus 617 ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm----~vfDtL~r~-shd~dl~ 691 (881)
T COG5110 617 EALIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQM----NVFDTLERS-SHDGDLN 691 (881)
T ss_pred HHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcch----HHHHHHHHh-ccccchh
Confidence 45666666555444422 222 4445555666666679999999999999999999985 367888887 7999999
Q ss_pred HHHHHHHHHHHHH
Q 003201 191 VVANCLSALQEIW 203 (840)
Q Consensus 191 Vv~~al~~L~eI~ 203 (840)
|..|++.++--|.
T Consensus 692 v~~ntIfamGLiG 704 (881)
T COG5110 692 VIINTIFAMGLIG 704 (881)
T ss_pred HHHHHHHHhhccc
Confidence 9999998886653
No 268
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=23.77 E-value=1e+02 Score=30.97 Aligned_cols=58 Identities=16% Similarity=0.151 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Q 003201 148 NSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (840)
Q Consensus 148 ~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~ 207 (840)
---+||.|.-|++-+....++.+.-.+|.+.+..- +.| ++.+..-|...+..+....|
T Consensus 40 GLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~G-L~D-~~DIk~L~~~~l~kl~~~~p 97 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAG-LKD-EHDIKMLCHLMLSKLAQLAP 97 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHT-TSS--HHHHHHHHHHHHHHHHS-H
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhh-cCC-cHHHHHHHHHHHHHHHHhCH
Confidence 34799999999999999888776445677777776 588 77777767777777765433
No 269
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=23.40 E-value=1.6e+02 Score=35.64 Aligned_cols=82 Identities=20% Similarity=0.163 Sum_probs=65.3
Q ss_pred hhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHH
Q 003201 114 PMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVA 193 (840)
Q Consensus 114 p~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~ 193 (840)
+-+-|.||-+||.=.. .+.....+.+.|.-.+|.+||..-+|+.=++-.+|+. +..+.|.++ ..|.|+-|..
T Consensus 622 ~avLgiAliAMgeeig---~eM~lR~f~h~l~yge~~iRravPLal~llsvSNPq~----~vlDtLsk~-shd~D~eva~ 693 (878)
T KOG2005|consen 622 LAVLGIALIAMGEEIG---SEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV----NVLDTLSKF-SHDGDLEVAM 693 (878)
T ss_pred chhhhhhhhhhhhhhh---hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc----hHHHHHHHh-ccCcchHHHH
Confidence 5667788888775333 3445566667777889999999999999999999985 468899887 7999999999
Q ss_pred HHHHHHHHHH
Q 003201 194 NCLSALQEIW 203 (840)
Q Consensus 194 ~al~~L~eI~ 203 (840)
||+.++--|.
T Consensus 694 naIfamGLiG 703 (878)
T KOG2005|consen 694 NAIFAMGLIG 703 (878)
T ss_pred HHHHHhcccc
Confidence 9999987664
No 270
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=23.06 E-value=5e+02 Score=25.73 Aligned_cols=51 Identities=10% Similarity=0.205 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Q 003201 154 VAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (840)
Q Consensus 154 ~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~ 207 (840)
-+.-=+.++|+.++... .+.++.+.+.+....+..+ ..=+-+|.+|.+..|
T Consensus 37 LG~~IL~~~fk~h~~~r--~~Ile~l~~rI~~~s~~~~-~~~idlL~~lv~~~p 87 (158)
T PF14676_consen 37 LGIQILLELFKVHEMIR--SEILEQLLNRIVTKSSSPS-SQYIDLLSELVRKAP 87 (158)
T ss_dssp HHHHHHHHHHHH-GGGH--HHHHHHHHHHHHH--SS---HHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHhHHHH--HHHHHHHHHHHHhcCccch-hHHHHHHHHHHHHCh
Confidence 34444677888877765 5566666665555554422 334566777766543
No 271
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=22.57 E-value=3.2e+02 Score=32.29 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=17.5
Q ss_pred HHHHHHhccCCCCHHHHHHHHHH
Q 003201 358 KLEMLTAVANESNTYEIVTELCE 380 (840)
Q Consensus 358 kLdiL~~L~n~~Nv~~Iv~EL~~ 380 (840)
++.=|..=+|.+|+.+|+.||..
T Consensus 167 sInglInkvn~sNi~~ii~eLfq 189 (739)
T KOG2140|consen 167 SINGLINKVNASNIQEIIRELFQ 189 (739)
T ss_pred HhHHHHhhhhHHHHHHHHHHHHH
Confidence 34445666789999999999873
No 272
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=22.27 E-value=1.2e+02 Score=21.53 Aligned_cols=30 Identities=33% Similarity=0.345 Sum_probs=24.5
Q ss_pred CCchHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 003201 173 ADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (840)
Q Consensus 173 ~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~ 203 (840)
.+.++.|..+ +...|+.++.+|+.+|..|+
T Consensus 11 ~g~i~~L~~l-l~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 11 AGGLPALVEL-LKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCCHHHHHHH-HcCCCHHHHHHHHHHHHHHc
Confidence 4567888887 57889999999999988764
No 273
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=21.94 E-value=2.1e+02 Score=30.51 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHHhcc-CCCCHH------------HHHHHHHHhhhcC-CHHHHHHHHHHHHHHHhhcCCh-------
Q 003201 349 NEPSYVKKLKLEMLTAVA-NESNTY------------EIVTELCEYAANV-DIPIARESIRAVGKIALQQYDV------- 407 (840)
Q Consensus 349 ~dp~~IK~~kLdiL~~L~-n~~Nv~------------~Iv~EL~~y~~~~-d~~~~~~~i~aI~~la~k~~~~------- 407 (840)
+.+.+=++.+||.|.+|+ .+.|++ .++.-|..++... |.-.|+-+|.-+..+|.--...
T Consensus 135 ~~~lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q 214 (257)
T PF12031_consen 135 HSPLSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQ 214 (257)
T ss_pred CCCCCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 455677888899988886 677765 3444555666553 5556666666666666532211
Q ss_pred HHHHHHHHHHhhhc
Q 003201 408 NAIVDRLLQFLEME 421 (840)
Q Consensus 408 ~~~v~~Ll~LL~~~ 421 (840)
..||..|+.||+.+
T Consensus 215 ~~~i~~Li~FiE~a 228 (257)
T PF12031_consen 215 KPCISHLIAFIEDA 228 (257)
T ss_pred hchHHHHHHHHHHH
Confidence 24777888888864
No 274
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=21.81 E-value=1.9e+02 Score=22.34 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=27.9
Q ss_pred HHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhc
Q 003201 23 SDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTI 57 (840)
Q Consensus 23 ~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~l 57 (840)
.|||.+|.+..-..-|=....|+-+.||+..++..
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~~~~~~ 43 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRKLYEKKLRKLRRG 43 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHHHHHHHHHHHHcC
Confidence 68999999987666664557899999999887753
No 275
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=21.50 E-value=1.1e+03 Score=26.40 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=47.6
Q ss_pred CChhhhHHHHHHHHHhcc----------CCCChHHHHHHHHHHHHHHhhcCCcccCCCchHH----HHHHHhcCCChh-H
Q 003201 127 LRVANLVEYLVGPLGLGL----------KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPT----LKHLMLNDPDPQ-V 191 (840)
Q Consensus 127 I~~~~i~e~l~~~v~~~L----------~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~----L~~lLL~D~d~~-V 191 (840)
|.....+-.+++.+..|+ .+.+..+|.-|+-.+..+++.+.... +++.++ +.+.+++...+. .
T Consensus 250 l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y--~~l~~ri~~tl~k~l~d~~~~~~~ 327 (343)
T cd08050 250 LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSY--NTLQPRITRTLLKALLDPKKPLTT 327 (343)
T ss_pred CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCC--CcHHHHHHHHHHHHHcCCCCCcch
Confidence 445555566777777776 23456999999999999999887765 445444 444433333333 3
Q ss_pred HHHHHHHHHHH
Q 003201 192 VANCLSALQEI 202 (840)
Q Consensus 192 v~~al~~L~eI 202 (840)
...|+.-|..+
T Consensus 328 ~YGAi~GL~~l 338 (343)
T cd08050 328 HYGAIVGLSAL 338 (343)
T ss_pred hhHHHHHHHHh
Confidence 66666666655
No 276
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=21.40 E-value=3.7e+02 Score=24.58 Aligned_cols=51 Identities=16% Similarity=0.183 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Q 003201 154 VAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (840)
Q Consensus 154 ~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~ 207 (840)
...+-+..+.+.+++.. .+....|.+- +.++|+.|+.-|+.+|..+.++.+
T Consensus 19 ~~i~~i~d~~~~~~~~~--~~~~~~l~kR-l~~~~~~~~lkaL~lLe~lvkN~g 69 (115)
T cd00197 19 PLIMEICDLINETNVGP--KEAVDAIKKR-INNKNPHVVLKALTLLEYCVKNCG 69 (115)
T ss_pred HHHHHHHHHHHCCCccH--HHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHcc
Confidence 44455555555555554 4567778887 588999999999999999987544
No 277
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=21.34 E-value=9.8e+02 Score=29.66 Aligned_cols=126 Identities=21% Similarity=0.187 Sum_probs=76.3
Q ss_pred hhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCC---ChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChh
Q 003201 114 PMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDN---NSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQ 190 (840)
Q Consensus 114 p~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~---~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~ 190 (840)
|.|+.+=|+-|+.-..+...|.....|.++-.-. ..|+|... ++ .+.-.+.|.+| |+-.|..
T Consensus 517 p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v-------~~-------kekgl~~l~~l-l~~~~~~ 581 (717)
T KOG1048|consen 517 PSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAV-------FR-------KEKGLPPLVEL-LRNDDSD 581 (717)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhh-------hh-------hccCccHHHHH-HhcCCch
Confidence 4555555555555556666666666666544322 23444432 11 13345567776 6777888
Q ss_pred HHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCCh-----hH-HHHHHHHHHhcCCCChhHHHHHH
Q 003201 191 VVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSE-----WA-QCLVLELVAKYVPLDSNEIFDIM 263 (840)
Q Consensus 191 Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~-----W~-Qi~iL~lL~~y~p~~~~e~~~il 263 (840)
|+.++..+|-.+.. ++ ....+|-+..+.+|+++|.+..+ |- .+.++..|..+...+...+.++.
T Consensus 582 vv~s~a~~LrNls~-d~--------rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~ 651 (717)
T KOG1048|consen 582 VVRSAAGALRNLSR-DI--------RNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLL 651 (717)
T ss_pred HHHHHHHHHhhhcc-Cc--------hhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHH
Confidence 99988899988764 22 22245667788999999987655 54 45566666666655555555553
No 278
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=21.07 E-value=1.1e+03 Score=25.92 Aligned_cols=90 Identities=23% Similarity=0.405 Sum_probs=52.8
Q ss_pred cCCchHHHHHHHHHHcCcCCCCC-ChHHHHHHHHH--------hhccCCcHHHHHH---HHHHHhHH----hhcCChhHH
Q 003201 458 NVQEPKAKAALIWMLGEYSQDMQ-DAPYILESLTE--------NWEEEPSAEVRLH---LLTAVMKC----FFKRPPETQ 521 (840)
Q Consensus 458 ~i~~~~ak~a~iwilGEy~~~i~-~~~~il~~l~~--------~~~~e~~~~vk~~---lLta~~Kl----~~~~p~e~~ 521 (840)
...+|++...+.-++...++.+. ..+.+++.+.+ +|. +- |+.|.. +|.++.+- ++.-|++.-
T Consensus 86 ~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~-~y-Pe~r~~ff~LL~~i~~~~f~~l~~lp~~~f 163 (319)
T PF08767_consen 86 DAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFE-EY-PEHRVNFFKLLRAINEHCFPALLQLPPEQF 163 (319)
T ss_dssp GGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSS-SS-HHHHHHHHHHHHHHHHHHTHHHHHS-HHHH
T ss_pred cccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh-hC-hHHHHHHHHHHHHHHHHhHHHHHcCCHHHH
Confidence 44667776666666666666543 35666554332 222 22 666655 34444443 334565544
Q ss_pred HHHHHHHHhhccCCChHHHhHHHHHHHH
Q 003201 522 KVLGAALAAGLADFHQDVHDRALFYHRL 549 (840)
Q Consensus 522 ~~l~~vL~~~~~d~d~dVrdRA~~Y~rL 549 (840)
+.+-.-+.++....+.||-+.|.....-
T Consensus 164 ~~~idsi~wg~kh~~~~I~~~~L~~l~~ 191 (319)
T PF08767_consen 164 KLVIDSIVWGFKHTNREISETGLNILLE 191 (319)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 5566666788889999999999876643
No 279
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=20.38 E-value=6.8e+02 Score=23.07 Aligned_cols=86 Identities=17% Similarity=0.242 Sum_probs=57.5
Q ss_pred HHHHHHHHHhhcC-CCChhhHhHHHHHhhCCCh-----hhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCccc
Q 003201 98 ALLTINFLQRDCK-DEDPMIRGLALRSLCSLRV-----ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI 171 (840)
Q Consensus 98 ~lL~iNtl~KDl~-~~Np~ir~LALr~l~~I~~-----~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~ 171 (840)
..-+..++.+-+. +.++..|+-|.--++.+.. +++++.+...|.+....... .|.|.+|+..+++...+.
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q~~~-- 79 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQENV-- 79 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHccccc--
Confidence 3445667778887 7788888888777776643 57777777777777666655 788999999999765222
Q ss_pred CCCchHHHHHHHhcCCC
Q 003201 172 DADFPPTLKHLMLNDPD 188 (840)
Q Consensus 172 ~~~~~~~L~~lLL~D~d 188 (840)
..+.+...+.+.+=++
T Consensus 80 -~~lp~~~~~~l~~~~~ 95 (121)
T PF12397_consen 80 -DSLPRKVFKALLKLPD 95 (121)
T ss_pred -ccCCHHHHHHHHcCcc
Confidence 3455554444333333
No 280
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=20.28 E-value=1e+03 Score=28.34 Aligned_cols=62 Identities=11% Similarity=0.164 Sum_probs=32.3
Q ss_pred EEEccCCC-HHHHHHHHHHHHhccCCCCHH--HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcC
Q 003201 344 FYCQYNEP-SYVKKLKLEMLTAVANESNTY--EIVTELCEYAANVDIPIARESIRAVGKIALQQY 405 (840)
Q Consensus 344 f~c~~~dp-~~IK~~kLdiL~~L~n~~Nv~--~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~ 405 (840)
+-++..|| .|||..-+.+.|.|....-.+ .++.=+..-+.+.+.-+..++--.|-++-..+|
T Consensus 196 le~ls~d~i~~Vk~qvv~~VydLL~a~peqe~nLl~L~INKlGDk~~kvsskasY~ilkLe~~hP 260 (821)
T COG5593 196 LEVLSHDPIQYVKKQVVRLVYDLLEARPEQEVNLLHLFINKLGDKRDKVSSKASYVILKLELLHP 260 (821)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhccchhhhhhhhhHHHHHHHhcCC
Confidence 33456677 799999998888876544222 223333333444444344444333433333344
No 281
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=20.02 E-value=9.3e+02 Score=24.47 Aligned_cols=94 Identities=18% Similarity=0.282 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHH
Q 003201 42 DSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLAL 121 (840)
Q Consensus 42 ~~kk~~lkKlI~~m~lG~DvS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LAL 121 (840)
..-++.+.|-=++... +....++.++.++.=++..+.+=.|-.+..-...+|+- +..-|..... |+.||..|+
T Consensus 25 ~eek~llW~~R~~~l~--~~p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~---aL~LL~~~~~--~~~Vr~yAV 97 (184)
T smart00145 25 AEEKDLIWKFRHYYLT--NNPKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPED---ALELLSPKFP--DPFVRAYAV 97 (184)
T ss_pred HHHHHHHHHChHHHHh--cChHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHH---HHHHhCccCC--CHHHHHHHH
Confidence 3456666665433321 22233555555556666666666666676666655554 4455555555 799999999
Q ss_pred HHhhCCChhhhHHHHHHHHHh
Q 003201 122 RSLCSLRVANLVEYLVGPLGL 142 (840)
Q Consensus 122 r~l~~I~~~~i~e~l~~~v~~ 142 (840)
+.|.+....++.-++-+-|+.
T Consensus 98 ~~L~~~~d~~l~~yLpQLVQa 118 (184)
T smart00145 98 ERLESASDEELLLYLLQLVQA 118 (184)
T ss_pred HHHHhCCHHHHHHHHHHHHHH
Confidence 999999999887776665554
Done!