Query 003201
Match_columns 840
No_of_seqs 325 out of 1364
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 16:57:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003201.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003201hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_B AP-2 complex subunit be 100.0 9.8E-93 3.4E-97 842.0 54.7 578 11-606 4-586 (591)
2 2vgl_A Adaptor protein complex 100.0 2.3E-87 7.9E-92 798.6 41.7 538 19-584 34-617 (621)
3 1w63_A Adapter-related protein 100.0 2.5E-81 8.5E-86 747.6 40.8 527 18-570 32-594 (618)
4 3tjz_B Coatomer subunit gamma; 100.0 1.1E-54 3.9E-59 478.1 13.1 323 16-368 22-354 (355)
5 1b3u_A Protein (protein phosph 99.7 1.4E-15 4.7E-20 177.7 26.3 434 69-550 132-585 (588)
6 2g30_A AP-2 complex subunit be 99.6 7.2E-16 2.5E-20 162.0 12.2 112 720-836 146-257 (258)
7 4fdd_A Transportin-1; heat rep 99.6 2.9E-12 1E-16 157.7 37.1 522 21-555 87-788 (852)
8 4fdd_A Transportin-1; heat rep 99.5 1.7E-12 5.7E-17 159.9 28.8 401 68-516 18-473 (852)
9 1b3u_A Protein (protein phosph 99.5 1.9E-12 6.4E-17 151.1 26.1 505 67-594 14-550 (588)
10 2vgl_B AP-2 complex subunit be 99.5 4.2E-13 1.4E-17 158.8 18.5 419 102-544 15-449 (591)
11 1u6g_C TIP120 protein, CAND1; 99.4 4.4E-11 1.5E-15 152.9 33.4 475 63-550 6-596 (1230)
12 2bpt_A Importin beta-1 subunit 99.4 4.7E-10 1.6E-14 137.1 37.2 517 21-548 92-707 (861)
13 1wa5_B Importin alpha subunit; 99.4 8.7E-11 3E-15 136.6 28.7 346 18-404 85-459 (530)
14 2bpt_A Importin beta-1 subunit 99.4 3.8E-10 1.3E-14 138.0 34.1 370 130-548 90-525 (861)
15 1qgr_A Protein (importin beta 99.4 2.7E-09 9.1E-14 130.7 41.0 380 21-404 87-539 (876)
16 2jdq_A Importin alpha-1 subuni 99.4 1.3E-11 4.4E-16 139.3 18.8 330 100-437 20-389 (450)
17 2jdq_A Importin alpha-1 subuni 99.3 5.4E-10 1.8E-14 126.0 31.8 340 22-404 22-392 (450)
18 1wa5_B Importin alpha subunit; 99.3 7.5E-11 2.6E-15 137.1 25.0 343 61-441 85-460 (530)
19 1w63_A Adapter-related protein 99.3 8E-12 2.7E-16 148.6 15.0 408 102-533 36-470 (618)
20 4b8j_A Importin subunit alpha- 99.3 1.5E-10 5.1E-15 134.3 25.3 340 65-441 76-446 (528)
21 2z6g_A B-catenin; FULL-length, 99.3 5.9E-10 2E-14 136.0 31.6 446 101-558 116-628 (780)
22 2z6g_A B-catenin; FULL-length, 99.3 3.6E-10 1.2E-14 137.9 29.5 468 65-549 117-660 (780)
23 4b8j_A Importin subunit alpha- 99.3 2.9E-09 9.9E-14 123.5 32.5 340 21-403 75-444 (528)
24 2z6h_A Catenin beta-1, beta-ca 99.3 2.2E-09 7.5E-14 128.0 31.8 441 96-552 10-527 (644)
25 1jdh_A Beta-catenin; beta-cate 99.3 2.7E-09 9.3E-14 123.0 31.3 435 95-560 12-497 (529)
26 1u6g_C TIP120 protein, CAND1; 99.2 4.4E-09 1.5E-13 134.4 35.3 462 39-516 18-600 (1230)
27 1oyz_A Hypothetical protein YI 99.2 1.4E-10 4.6E-15 123.3 16.4 254 101-434 24-278 (280)
28 1qgr_A Protein (importin beta 99.2 4.6E-09 1.6E-13 128.6 31.8 469 70-550 224-869 (876)
29 1ibr_B P95, importin beta-1 su 99.1 2.1E-09 7.2E-14 121.2 22.7 251 103-367 4-288 (462)
30 3ul1_B Importin subunit alpha- 99.1 1.1E-08 3.8E-13 118.6 24.8 297 136-440 101-432 (510)
31 1jdh_A Beta-catenin; beta-cate 99.1 9.9E-08 3.4E-12 109.8 32.2 452 65-547 19-525 (529)
32 4hxt_A De novo protein OR329; 99.0 2.1E-08 7.2E-13 103.4 21.5 226 102-335 4-245 (252)
33 2vgl_A Adaptor protein complex 99.0 1.4E-07 4.9E-12 112.0 31.0 386 78-495 58-489 (621)
34 2z6h_A Catenin beta-1, beta-ca 99.0 1.1E-07 3.7E-12 113.3 30.1 436 65-516 16-529 (644)
35 3now_A UNC-45 protein, SD10334 99.0 6E-08 2.1E-12 117.2 27.5 395 71-476 255-736 (810)
36 1oyz_A Hypothetical protein YI 99.0 4.8E-09 1.6E-13 111.2 15.9 253 137-473 25-278 (280)
37 3ltm_A Alpha-REP4; protein eng 99.0 1.1E-08 3.6E-13 103.8 17.4 186 101-333 20-205 (211)
38 3tpo_A Importin subunit alpha- 99.0 6.7E-08 2.3E-12 112.4 25.3 296 136-439 120-450 (529)
39 3ltj_A Alpharep-4; protein eng 98.9 3.7E-08 1.3E-12 98.9 18.9 184 100-330 14-197 (201)
40 3ul1_B Importin subunit alpha- 98.9 2.4E-07 8.1E-12 107.4 28.0 329 65-401 59-429 (510)
41 3tpo_A Importin subunit alpha- 98.8 4.4E-06 1.5E-10 97.1 35.0 338 21-401 77-448 (529)
42 1ibr_B P95, importin beta-1 su 98.8 2.2E-07 7.4E-12 104.6 22.9 319 130-479 85-439 (462)
43 3now_A UNC-45 protein, SD10334 98.8 6.5E-08 2.2E-12 116.9 19.2 399 39-442 259-741 (810)
44 4hxt_A De novo protein OR329; 98.8 3.9E-07 1.3E-11 93.7 21.5 232 137-405 4-244 (252)
45 3ltm_A Alpha-REP4; protein eng 98.7 4.6E-07 1.6E-11 91.6 19.5 185 64-291 20-204 (211)
46 4db8_A Armadillo-repeat protei 98.7 1.8E-07 6E-12 97.0 15.7 220 102-329 14-249 (252)
47 3ltj_A Alpharep-4; protein eng 98.7 7.3E-07 2.5E-11 89.4 19.1 183 64-289 15-197 (201)
48 4db8_A Armadillo-repeat protei 98.7 1.9E-07 6.4E-12 96.8 15.2 220 62-289 11-250 (252)
49 3tjz_B Coatomer subunit gamma; 98.5 3E-06 1E-10 93.1 18.7 266 134-425 67-340 (355)
50 4db6_A Armadillo repeat protei 98.5 2.6E-06 8.9E-11 85.6 15.7 189 134-330 11-208 (210)
51 4db6_A Armadillo repeat protei 98.4 2E-06 6.9E-11 86.5 14.5 186 58-251 7-207 (210)
52 3b2a_A TON_1937, putative unch 98.4 7E-06 2.4E-10 83.4 16.5 191 175-379 34-230 (265)
53 1xm9_A Plakophilin 1; armadill 98.4 2.6E-05 8.9E-10 88.9 23.7 330 137-477 4-449 (457)
54 1wa5_C Importin alpha RE-expor 98.3 0.00046 1.6E-08 85.9 33.0 351 133-514 83-525 (960)
55 2qk2_A LP04448P; mini spindles 98.2 3.4E-05 1.2E-09 79.8 16.5 197 135-342 15-217 (242)
56 3l6x_A Catenin delta-1; cateni 98.2 0.00025 8.6E-09 82.9 25.1 186 136-330 49-269 (584)
57 1xm9_A Plakophilin 1; armadill 98.1 0.0012 4.2E-08 75.0 28.2 302 22-334 4-409 (457)
58 1te4_A Conserved protein MTH18 98.1 2.5E-06 8.6E-11 79.9 4.8 86 103-202 15-100 (131)
59 1te4_A Conserved protein MTH18 98.0 1.5E-06 5E-11 81.5 2.9 117 65-201 14-130 (131)
60 3nmw_A APC variant protein; AR 97.9 0.00018 6.2E-09 79.2 17.7 219 112-336 96-339 (354)
61 4ady_A RPN2, 26S proteasome re 97.9 0.0057 1.9E-07 74.6 31.3 282 102-420 394-699 (963)
62 2qk1_A Protein STU2; STU2P, XM 97.9 0.00013 4.4E-09 76.4 15.0 210 139-363 20-246 (249)
63 3opb_A SWI5-dependent HO expre 97.9 0.015 5.2E-07 69.4 33.6 440 88-548 161-724 (778)
64 2x19_B Importin-13; nuclear tr 97.9 0.00076 2.6E-08 83.6 23.6 122 74-203 36-174 (963)
65 3l6x_A Catenin delta-1; cateni 97.9 0.0023 7.8E-08 74.8 25.7 352 16-376 44-485 (584)
66 2db0_A 253AA long hypothetical 97.8 0.00018 6.1E-09 70.4 13.2 213 172-402 30-246 (253)
67 3nmz_A APC variant protein; pr 97.8 0.00027 9.2E-09 80.5 16.6 218 112-335 212-454 (458)
68 2x1g_F Cadmus; transport prote 97.8 0.0041 1.4E-07 77.2 28.8 442 69-529 13-587 (971)
69 3nmz_A APC variant protein; pr 97.8 0.00061 2.1E-08 77.6 18.9 286 149-444 96-456 (458)
70 2qk2_A LP04448P; mini spindles 97.8 0.00031 1.1E-08 72.5 15.0 141 59-204 10-162 (242)
71 1xqr_A HSPBP1 protein; armadil 97.5 0.00074 2.5E-08 72.5 14.2 152 137-332 83-239 (296)
72 3opb_A SWI5-dependent HO expre 97.5 0.0053 1.8E-07 73.3 22.3 321 114-438 308-728 (778)
73 1xqr_A HSPBP1 protein; armadil 97.5 0.00099 3.4E-08 71.5 14.8 185 19-205 24-239 (296)
74 1wa5_C Importin alpha RE-expor 97.5 0.0065 2.2E-07 75.5 23.6 259 77-343 375-681 (960)
75 2qk1_A Protein STU2; STU2P, XM 97.5 0.002 6.9E-08 67.2 15.9 136 70-206 23-177 (249)
76 3nmw_A APC variant protein; AR 97.3 0.0062 2.1E-07 66.9 17.8 221 188-446 97-342 (354)
77 3b2a_A TON_1937, putative unch 97.3 0.0019 6.4E-08 65.8 12.1 179 134-332 32-219 (265)
78 4ady_A RPN2, 26S proteasome re 97.1 0.074 2.5E-06 64.9 25.9 209 50-284 494-713 (963)
79 2db0_A 253AA long hypothetical 97.1 0.03 1E-06 54.9 17.9 201 111-331 43-246 (253)
80 2x19_B Importin-13; nuclear tr 97.0 0.18 6E-06 62.3 29.1 191 355-550 424-644 (963)
81 3ibv_A Exportin-T; karyopherin 96.7 1.7 6E-05 53.9 34.8 152 132-288 86-258 (980)
82 2x1g_F Cadmus; transport prote 96.7 0.69 2.3E-05 57.1 30.7 171 150-334 436-618 (971)
83 3a6p_A Exportin-5; exportin-5, 96.7 0.78 2.7E-05 58.3 31.5 122 76-204 26-162 (1204)
84 4ffb_C Protein STU2; tubulin f 96.6 0.032 1.1E-06 58.6 15.8 188 140-332 14-213 (278)
85 3m1i_C Exportin-1; heat repeat 96.6 1.5 5.1E-05 54.8 33.4 87 460-548 465-565 (1049)
86 3u0r_A Apoptosis inhibitor 5; 96.5 0.52 1.8E-05 52.9 24.3 132 65-203 31-162 (507)
87 3m1i_C Exportin-1; heat repeat 96.4 1 3.5E-05 56.3 30.3 69 136-206 195-265 (1049)
88 4ffb_C Protein STU2; tubulin f 96.4 0.029 9.9E-07 59.0 13.4 175 70-290 16-212 (278)
89 3grl_A General vesicular trans 96.4 0.41 1.4E-05 55.9 23.8 298 145-444 32-400 (651)
90 3grl_A General vesicular trans 96.0 0.14 4.9E-06 59.7 17.8 254 71-335 30-346 (651)
91 3gs3_A Symplekin, LD45768P; he 95.3 1.1 3.6E-05 46.7 19.5 170 116-290 31-243 (257)
92 3o2t_A Symplekin; heat repeat, 95.2 0.35 1.2E-05 53.3 16.2 186 116-310 41-272 (386)
93 3hs8_A Adaptor protein complex 95.1 0.082 2.8E-06 55.7 10.4 111 720-833 159-271 (273)
94 3tt9_A Plakophilin-2; cell adh 95.0 0.26 8.9E-06 50.6 13.7 168 137-313 10-205 (233)
95 4hat_C Exportin-1; heat repeat 94.9 11 0.00036 47.1 30.2 176 119-334 435-621 (1023)
96 3ibv_A Exportin-T; karyopherin 94.8 2 6.8E-05 53.3 23.5 122 80-205 416-567 (980)
97 3gs3_A Symplekin, LD45768P; he 94.8 0.84 2.9E-05 47.5 16.9 125 41-203 29-172 (257)
98 2of3_A ZYG-9; multifunctional 93.3 0.33 1.1E-05 50.8 10.2 188 13-207 27-239 (266)
99 3a6p_A Exportin-5; exportin-5, 93.1 22 0.00074 45.1 28.6 92 113-206 26-127 (1204)
100 1ho8_A Vacuolar ATP synthase s 92.8 9.2 0.00032 43.0 21.5 332 174-514 77-476 (480)
101 3u0r_A Apoptosis inhibitor 5; 92.5 16 0.00056 41.0 26.1 62 139-204 33-94 (507)
102 3o2t_A Symplekin; heat repeat, 92.1 2.3 7.9E-05 46.8 15.4 190 42-268 40-271 (386)
103 1kyf_A Alpha-adaptin C; protei 92.1 0.8 2.7E-05 47.4 11.2 112 720-834 133-246 (247)
104 4hat_C Exportin-1; heat repeat 90.6 41 0.0014 41.7 34.4 116 79-202 32-164 (1023)
105 3l9t_A Putative uncharacterize 90.3 5.4 0.00018 40.7 14.8 132 110-261 81-215 (240)
106 2of3_A ZYG-9; multifunctional 89.8 1.5 5.1E-05 45.8 10.6 180 136-335 47-240 (266)
107 1lsh_A Lipovitellin (LV-1N, LV 89.1 23 0.00077 44.2 22.4 137 366-514 433-576 (1056)
108 3l9t_A Putative uncharacterize 88.5 1.9 6.5E-05 44.1 9.8 145 60-214 68-217 (240)
109 1lsh_A Lipovitellin (LV-1N, LV 88.1 2.4 8.3E-05 53.0 12.7 121 77-202 409-541 (1056)
110 3tt9_A Plakophilin-2; cell adh 87.9 6.8 0.00023 39.9 13.9 126 175-309 9-142 (233)
111 3gjx_A Exportin-1; transport, 87.4 51 0.0017 41.1 23.8 103 100-205 477-596 (1073)
112 4gmo_A Putative uncharacterize 84.8 2.3 7.9E-05 50.5 9.7 66 139-206 38-107 (684)
113 2iw3_A Elongation factor 3A; a 84.7 16 0.00055 45.0 17.0 254 101-368 55-328 (986)
114 3dad_A FH1/FH2 domain-containi 82.3 14 0.00049 39.6 13.4 153 144-334 127-289 (339)
115 2iw3_A Elongation factor 3A; a 81.9 27 0.00091 43.1 17.4 218 101-332 96-325 (986)
116 3oc3_A Helicase MOT1, MOT1; re 80.7 8.1 0.00028 44.3 11.1 228 71-326 182-431 (800)
117 3gjx_A Exportin-1; transport, 80.4 1.3E+02 0.0043 37.6 33.9 129 67-203 32-177 (1073)
118 4gmo_A Putative uncharacterize 75.3 10 0.00035 44.9 10.8 84 464-547 555-660 (684)
119 1lrv_A LRV, leucine-rich repea 73.5 2.3 7.9E-05 43.8 4.0 64 109-199 131-194 (244)
120 1lrv_A LRV, leucine-rich repea 72.3 2.7 9.2E-05 43.3 4.1 66 105-197 79-144 (244)
121 3fga_B Serine/threonine-protei 72.1 1.1E+02 0.0037 33.7 17.0 172 375-547 131-317 (403)
122 3oc3_A Helicase MOT1, MOT1; re 66.6 63 0.0022 37.2 13.7 130 71-202 271-402 (800)
123 3jxy_A Alkylpurine DNA glycosy 65.8 48 0.0016 33.4 12.0 90 138-249 134-223 (232)
124 1pzd_A Coatomer gamma subunit; 61.3 21 0.00072 38.1 8.5 96 729-829 217-319 (322)
125 2b6c_A Hypothetical protein EF 61.0 17 0.00058 36.4 7.5 128 69-207 61-191 (220)
126 1r4x_A Gamma1-COP, coatomer ga 59.1 25 0.00086 36.6 8.4 96 729-829 170-272 (275)
127 2npp_B PP2A, B subunit, serine 59.0 2.2E+02 0.0076 31.6 17.6 174 374-548 163-351 (449)
128 3ldz_A STAM-1, signal transduc 58.0 26 0.00088 32.6 7.6 80 80-163 22-113 (140)
129 1t06_A Hypothetical protein; s 58.0 56 0.0019 33.0 10.8 84 124-208 86-184 (235)
130 1t06_A Hypothetical protein; s 57.6 10 0.00036 38.5 5.2 72 109-182 117-196 (235)
131 2jak_A Serine/threonine-protei 57.4 1.7E+02 0.0059 31.9 15.0 173 374-548 175-363 (392)
132 1x5b_A Signal transducing adap 56.6 54 0.0019 31.2 9.8 84 81-167 33-128 (163)
133 1juq_A ADP-ribosylation factor 50.1 65 0.0022 30.9 9.2 104 65-168 14-132 (171)
134 1x5b_A Signal transducing adap 49.4 48 0.0016 31.6 8.1 50 156-208 36-85 (163)
135 3jxy_A Alkylpurine DNA glycosy 48.4 9.2 0.00032 38.8 3.0 62 109-170 140-201 (232)
136 3zyq_A Hepatocyte growth facto 48.4 73 0.0025 32.0 9.7 82 80-164 25-118 (226)
137 2b6c_A Hypothetical protein EF 48.3 16 0.00054 36.7 4.7 66 105-170 129-194 (220)
138 1upk_A MO25 protein; transfera 46.6 3E+02 0.01 29.4 23.2 155 179-400 169-333 (341)
139 1dvp_A HRS, hepatocyte growth 45.8 88 0.003 31.1 9.8 76 83-161 25-112 (220)
140 3g2s_A C-terminal fragment of 43.0 1.1E+02 0.0038 28.6 9.4 81 304-407 50-131 (149)
141 3ldz_A STAM-1, signal transduc 42.5 69 0.0023 29.6 7.8 50 155-207 25-74 (140)
142 1mhq_A ADP-ribosylation factor 42.5 71 0.0024 29.9 7.9 85 83-167 21-119 (148)
143 3g2s_A C-terminal fragment of 41.3 1.2E+02 0.0042 28.3 9.4 100 65-168 12-130 (149)
144 3dad_A FH1/FH2 domain-containi 39.8 3.3E+02 0.011 29.0 13.4 133 73-207 128-289 (339)
145 1juq_A ADP-ribosylation factor 37.9 1.3E+02 0.0043 28.9 9.1 51 154-207 32-82 (171)
146 1mhq_A ADP-ribosylation factor 36.9 87 0.003 29.3 7.6 51 155-208 21-71 (148)
147 3s51_A Protein FACI, fanconi a 35.7 7.8E+02 0.027 31.1 20.0 52 493-546 487-538 (1308)
148 1vsy_5 Proteasome activator BL 35.6 21 0.00072 44.2 3.8 102 64-166 761-875 (997)
149 1ho8_A Vacuolar ATP synthase s 33.6 58 0.002 36.6 6.6 71 95-165 394-477 (480)
150 1elk_A Target of MYB1; superhe 29.7 2.2E+02 0.0077 26.6 9.2 84 78-164 31-130 (157)
151 1w9c_A CRM1 protein, exportin 24.5 5.3E+02 0.018 27.2 11.8 89 458-547 88-191 (321)
152 3zyq_A Hepatocyte growth facto 24.4 2.3E+02 0.0078 28.3 8.7 73 305-405 48-121 (226)
153 1elk_A Target of MYB1; superhe 23.7 2.4E+02 0.0082 26.4 8.2 50 155-207 36-86 (157)
154 2k8f_B Cellular tumor antigen 23.4 44 0.0015 23.3 2.0 19 724-742 11-29 (39)
155 3qml_C Protein SLS1, nucleotid 20.6 5.3E+02 0.018 27.1 10.6 66 484-552 161-227 (315)
156 1h2v_C 80 kDa nuclear CAP bind 20.1 2.7E+02 0.0093 33.2 9.4 74 360-433 14-89 (771)
No 1
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=100.00 E-value=9.8e-93 Score=842.04 Aligned_cols=578 Identities=36% Similarity=0.617 Sum_probs=532.4
Q ss_pred CCCCCCCCCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCCcchHHHHHHHHHHh
Q 003201 11 PSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNY 90 (840)
Q Consensus 11 ~~~~~~~~k~Ei~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG~DvS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~ 90 (840)
...|...+|||+.|||++|++ ++.++|+++++|+||+|++|+|++++|++|+++++++|+++||+||+|+..+
T Consensus 4 ~~~f~~~~~~e~~~i~~~L~~-------~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~ 76 (591)
T 2vgl_B 4 SKYFTTNKKGEIFELKAELNN-------EKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNY 76 (591)
T ss_dssp CCTTCCCSSSHHHHHHHHTTS-------SCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred chhcccccCChHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 345677889999999999987 4568999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcc
Q 003201 91 AKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (840)
Q Consensus 91 ~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~ 170 (840)
++.+||++++++|+|+|||+|+||.+|++|||+||+++.+++.+++.++|++++.|++|||||+|++|+.|+|+.+|+.+
T Consensus 77 ~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~ 156 (591)
T 2vgl_B 77 AKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV 156 (591)
T ss_dssp HHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH
T ss_pred cccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHh
Q 003201 171 IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAK 250 (840)
Q Consensus 171 ~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~ 250 (840)
.+.+|++.+..+ ++|+|++|+.+|+.+|.+|+..+++.. ...+.+..+.+|++.+.+++||+|+++|+++..
T Consensus 157 ~~~~~~~~l~~l-L~d~d~~V~~~A~~aL~~i~~~~~~~~-------~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~ 228 (591)
T 2vgl_B 157 EDQGFLDSLRDL-IADSNPMVVANAVAALSEISESHPNSN-------LLDLNPQNINKLLTALNECTEWGQIFILDCLSN 228 (591)
T ss_dssp HHHHHHHHHHHT-TSCSCHHHHHHHHHHHHHHTTSCCSCC-------SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHH-hCCCChhHHHHHHHHHHHHHhhCCCcc-------chhccHHHHHHHHHcCCCCCchHHHHHHHHHHH
Confidence 545799999998 799999999999999999998766420 012334578899999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCC---CchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHH
Q 003201 251 YVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLS---MTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLH 327 (840)
Q Consensus 251 y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~---~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~ 327 (840)
|.|.++++..++++.+.++++|.|++|+++|+++++++... .++..+.++.++.++|+.+++ +++|+||+||++|.
T Consensus 229 l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~ 307 (591)
T 2vgl_B 229 YNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNIN 307 (591)
T ss_dssp SCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999998742 234445567788888887775 78999999999999
Q ss_pred HHHhhCCCcccccccEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCC-
Q 003201 328 ILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD- 406 (840)
Q Consensus 328 ~l~~~~p~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~- 406 (840)
.+++.+|+.+..|++.|+|+++||.+||++|+++|+.|+|++|++.|++||.+|+.+.|.+|+++++++||.||.+|+.
T Consensus 308 ~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~ 387 (591)
T 2vgl_B 308 LIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS 387 (591)
T ss_dssp HHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred hHHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchhHHHHHHhhhcccCCchHHHHHHHHHHcCcCCCCCChHHHH
Q 003201 407 VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYIL 486 (840)
Q Consensus 407 ~~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~~~~l~~l~~~~i~~~~ak~a~iwilGEy~~~i~~~~~il 486 (840)
..||+++|+++++..++++..+++.++++|++++|+.++.++..++..+ +++.+|+++++++|++||||+.++++++++
T Consensus 388 ~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l-~~~~~~~~~~~~~wilGey~~~~~~~~~~l 466 (591)
T 2vgl_B 388 AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENL-DSLDEPDARAAMIWIVGEYAERIDNADELL 466 (591)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTT-TTCCSHHHHHHHHHHHHTTCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHH-HhccCHHHHHHHHHHHHcccccccCHHHHH
Confidence 5899999999999999999999999999999999999888877776654 567889999999999999999999999999
Q ss_pred HHHHHhhccCCcHHHHHHHHHHHhHHhhcCChhHHHHHHHHHHhhccC-CChHHHhHHHHHHHHccCCHHHHHhhcCCCC
Q 003201 487 ESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLAD-FHQDVHDRALFYHRLLQYNVSVAERVVNPPK 565 (840)
Q Consensus 487 ~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~~~~l~~vL~~~~~d-~d~dVrdRA~~Y~rLL~~~~~~a~~vv~~~~ 565 (840)
+.++++|..++ +.||.++|||++|+|.+.|++.+++++++|+.+.+| .|+||||||++||+||+.+++.++++|+++|
T Consensus 467 ~~l~~~~~~~~-~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~~~~~~~~~v~~~~ 545 (591)
T 2vgl_B 467 ESFLEGFHDES-TQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVTAKEVVLSEK 545 (591)
T ss_dssp HHHSTTCSSSC-HHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTTCTTHHHHHHTSCC
T ss_pred HHHHHhhccCC-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHCcCHHHHHHHHcCCC
Confidence 99999999998 999999999999999999988888999999998766 7999999999999999998899999999999
Q ss_pred CCccccccCCCHHHHHHHHHhhCcchhhccCCCcccccCCC
Q 003201 566 QAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKDY 606 (840)
Q Consensus 566 p~~~~~~~~~~~~~~~~l~~~~~tls~vy~k~~~~f~~~~~ 606 (840)
|+++...+..+++++++|+.+|||+|+||+||+|.|+++..
T Consensus 546 p~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~~~ 586 (591)
T 2vgl_B 546 PLISEETDLIEPTLLDELICHIGSLASVYHKPPNAFVEGSH 586 (591)
T ss_dssp CCCCSCSSCCCHHHHHHHHTTTTSSHHHHTSCGGGCC----
T ss_pred CCCCCCccccCHHHHHHHHHHhCcchhhhcCCHHHHcCCcc
Confidence 99998888889999999999999999999999999997763
No 2
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=100.00 E-value=2.3e-87 Score=798.65 Aligned_cols=538 Identities=20% Similarity=0.250 Sum_probs=460.3
Q ss_pred CCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCCcchHHHHHHHHHHhccCCCchH
Q 003201 19 KGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLA 98 (840)
Q Consensus 19 k~Ei~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG~DvS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~ 98 (840)
++|++|||++|++. .+.+..+|+++++|+||+|++|+|++++|++|+++++|+|+++||+||||++.|++.+||++
T Consensus 34 ~~E~~~ir~~~~~~----~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~ 109 (621)
T 2vgl_A 34 NKELANIRSKFKGD----KALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI 109 (621)
T ss_dssp HHHHHHHHHHHHSS----SCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH
Confidence 57999999999851 11345789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHHHhhcCCcccCCCch
Q 003201 99 LLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGL--KDNNSYVRTVAVIGVLKLYHISAPTCIDADFP 176 (840)
Q Consensus 99 lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L--~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~ 176 (840)
+|+||+|+|||+|+||++||+|||+||+|+++++++++.++|+++| .|++|||||+|++|++|+|+.+|+.+..++|.
T Consensus 110 ~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~ 189 (621)
T 2vgl_A 110 RLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWT 189 (621)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999555999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhh--ccC-----------ChhHHHH
Q 003201 177 PTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI--KEF-----------SEWAQCL 243 (840)
Q Consensus 177 ~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l--~~~-----------~~W~Qi~ 243 (840)
+.+.++ |+|+||+|+.+|+.++.+|++.+|+.+. .++ +..++.|.+.+ +++ +||+|++
T Consensus 190 ~~l~~l-L~d~d~~V~~~a~~~l~~i~~~~~~~~~-------~~~-~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~ 260 (621)
T 2vgl_A 190 SRVVHL-LNDQHLGVVTAATSLITTLAQKNPEEFK-------TSV-SLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVK 260 (621)
T ss_dssp HHHHHH-TTCSCHHHHHHHHHHHHHHHHHCHHHHT-------THH-HHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHH
T ss_pred HHHHHH-hCCCCccHHHHHHHHHHHHHHhChHHHH-------HHH-HHHHHHHHHHHhCCCCCccchhhcCCCCchHHHH
Confidence 999998 7999999999999999999987653110 111 12233333322 223 7999999
Q ss_pred HHHHHHhcCCC-ChhHHHHHHHHHHHH------------hccCCh--HHHHHHHHHHHhccCCCchhHHHHHHHHHHHHH
Q 003201 244 VLELVAKYVPL-DSNEIFDIMNLLEDR------------LQHANG--AVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLL 308 (840)
Q Consensus 244 iL~lL~~y~p~-~~~e~~~il~~l~~~------------L~~~n~--aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~ 308 (840)
+|++|+.|.|. +++....+.+.+... ++|.|+ ||+|||+++++++.+. + ..+..+.++|+
T Consensus 261 il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~-~----~~~~~~~~~L~ 335 (621)
T 2vgl_A 261 LLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSE-P----NLLVRACNQLG 335 (621)
T ss_dssp HHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC-H----HHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCc-H----HHHHHHHHHHH
Confidence 99999999986 455555555555443 345565 9999999999999743 2 23456778899
Q ss_pred HhhcCCCchhHHHHHHHHHHHHhhCC--CcccccccEEE-Ecc-CCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhc
Q 003201 309 TLVSSGSPEQSYAVLSHLHILVMRAP--FIFASDYKHFY-CQY-NEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAAN 384 (840)
Q Consensus 309 ~lLss~~~nirY~aL~~l~~l~~~~p--~~~~~~~~~f~-c~~-~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~ 384 (840)
+||+++++|+||++|++|..+++.+| ..++.|...|+ |+. ++|.+||++|||+|+.|+|++|++.|++||++|+.+
T Consensus 336 ~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~ 415 (621)
T 2vgl_A 336 QFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLET 415 (621)
T ss_dssp HHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHh
Confidence 99988999999999999999999987 57888887665 666 999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcC-ChHHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchhHHHHHHhhhcccCCchH
Q 003201 385 VDIPIARESIRAVGKIALQQY-DVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPK 463 (840)
Q Consensus 385 ~d~~~~~~~i~aI~~la~k~~-~~~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~~~~l~~l~~~~i~~~~ 463 (840)
.|.+|++++|++||.||+||+ +..||+++|+++++.+|+++.+|+|.++++++.++|+.+++++..+.+.+. +|+
T Consensus 416 ~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~----~~~ 491 (621)
T 2vgl_A 416 ADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQ----APA 491 (621)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHT----SSS
T ss_pred cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHc----Ccc
Confidence 999999999999999999997 569999999999999999999999999999999999999887766555442 333
Q ss_pred HH----HHHHHHHcCcCCCCCC-----hHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCChhHHHHHHHHHHhhcc-
Q 003201 464 AK----AALIWMLGEYSQDMQD-----APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLA- 533 (840)
Q Consensus 464 ak----~a~iwilGEy~~~i~~-----~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~~~~l~~vL~~~~~- 533 (840)
++ .+++|++||||+.+++ +.++++.++++|..++ +.||+++|||++|+|.+.| +.++.++.+|+.+++
T Consensus 492 ~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~-~~v~~~~Lta~~Kl~~~~p-~~~~~i~~~l~~~~~~ 569 (621)
T 2vgl_A 492 CHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCS-VPTRALLLSTYIKFVNLFP-EVKATIQDVLRSDSQL 569 (621)
T ss_dssp CCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHCG-GGHHHHHHHHSSHHHH
T ss_pred chHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHCh-HHHHHHHHHHHHHhcC
Confidence 33 3455999999998865 4589999999999998 9999999999999999887 578899999999998
Q ss_pred -CCChHHHhHHHHHHHHccCCHHHHHhhcCCCCCCccccccCCCHHHHHHHH
Q 003201 534 -DFHQDVHDRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIF 584 (840)
Q Consensus 534 -d~d~dVrdRA~~Y~rLL~~~~~~a~~vv~~~~p~~~~~~~~~~~~~~~~l~ 584 (840)
|.|+||||||++||+||+.+++.++++++++||+++. .++.++++|.
T Consensus 570 ~~~d~evrdRA~~y~~Ll~~~~~~~~~~vl~~~P~~~~----~~~~ll~~l~ 617 (621)
T 2vgl_A 570 KNADVELQQRAVEYLRLSTVASTDILATVLEEMPPFPE----RESSILAKLK 617 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHSSCSTTTTTTSSSCCCCCC----C---------
T ss_pred CCCCHHHHHHHHHHHHHHccCHHHHHHHHhhcCCCCCC----cchHHHHHHH
Confidence 8999999999999999998877889999999999752 3556666653
No 3
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=2.5e-81 Score=747.63 Aligned_cols=527 Identities=17% Similarity=0.178 Sum_probs=457.2
Q ss_pred CCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCCcchHHHHHHHHHHhccCCCch
Q 003201 18 GKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDL 97 (840)
Q Consensus 18 ~k~Ei~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG~DvS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl 97 (840)
.++|++|||++|++ ++..+|+++++|+||+|++|+|++++|++|+++++|+|+++|||||||++.|++.+||+
T Consensus 32 i~~e~~~ir~~l~~-------~~~~~k~~~l~kli~~~~~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~ 104 (618)
T 1w63_A 32 IQKECAAIRSSFRE-------EDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDV 104 (618)
T ss_dssp HHHHHHHHHHHHTT-------TCTTTHHHHHHHHHHHHHTTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHHHHHhhC-------CCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHH
Confidence 36899999999986 23467889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchH
Q 003201 98 ALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPP 177 (840)
Q Consensus 98 ~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~ 177 (840)
++|+||+|+|||+|+||++||+|||+||+|+.+++++++.+.|.++|.|++|||||+|++|+.|+|+.+|+.+ ++|.+
T Consensus 105 ~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v--~~~~~ 182 (618)
T 1w63_A 105 HLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM--EMFLP 182 (618)
T ss_dssp HHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG--GGGGG
T ss_pred HHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH--HHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988 68999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhh------------ccCChhHHHHHH
Q 003201 178 TLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI------------KEFSEWAQCLVL 245 (840)
Q Consensus 178 ~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l------------~~~~~W~Qi~iL 245 (840)
.+.++ ++|+|++|+.+|+.+|.+|+..+++. . .....+.+ .+.+++..+ ...+||+|++++
T Consensus 183 ~l~~l-L~D~d~~V~~~Al~~L~~i~~~~~~~----~-~~~~~~v~-~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il 255 (618)
T 1w63_A 183 ATKNL-LNEKNHGVLHTSVVLLTEMCERSPDM----L-AHFRKLVP-QLVRILKNLIMSGYSPEHDVSGISDPFLQVRIL 255 (618)
T ss_dssp GTTTS-TTCCCHHHHHHHHHHHHHHCCSHHHH----H-HHHHTTHH-HHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHH
T ss_pred HHHHH-hCCCCHhHHHHHHHHHHHHHHhChHH----H-HHHHHHHH-HHHHHHHHHHcCCCCccccccCCCCChHHHHHH
Confidence 99998 79999999999999999998755421 0 01111111 122333322 135999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHh------ccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhH
Q 003201 246 ELVAKYVPLDSNEIFDIMNLLEDRL------QHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQS 319 (840)
Q Consensus 246 ~lL~~y~p~~~~e~~~il~~l~~~L------~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nir 319 (840)
++|+.|++.+++....+++.+...+ +|.+.+|+++|+++++++... +. +...+.++|+.||+++++|+|
T Consensus 256 ~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~----l~~~a~~~L~~~L~~~d~~vr 330 (618)
T 1w63_A 256 RLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SG----LRVLAINILGRFLLNNDKNIR 330 (618)
T ss_dssp HHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HH----HHHHHHHHHHHHHTCSSTTTH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HH----HHHHHHHHHHHHHhCCCCchH
Confidence 9999999988876666666665554 356779999999999998653 22 234577889999999999999
Q ss_pred HHHHHHHHHHHhhCCCcccccc-cEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 003201 320 YAVLSHLHILVMRAPFIFASDY-KHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVG 398 (840)
Q Consensus 320 Y~aL~~l~~l~~~~p~~~~~~~-~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~ 398 (840)
|+||++|..+++.+|.+|.+|. ..|+|++|+|.+||++|+++|+.|+|++|++.|++||.+|+.+.|.+|+++++++||
T Consensus 331 ~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~ 410 (618)
T 1w63_A 331 YVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIF 410 (618)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999999987 466799999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcC-ChHHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchhHHHHHHhhhccc-CCchHHHHHHHHHHcCcC
Q 003201 399 KIALQQY-DVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQN-VQEPKAKAALIWMLGEYS 476 (840)
Q Consensus 399 ~la~k~~-~~~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~~~~l~~l~~~~-i~~~~ak~a~iwilGEy~ 476 (840)
.||.+|+ +..||+++++++|+..++++..++|.+++++++++|+.++.++..+..++.+. ..++.++ +++|++||||
T Consensus 411 ~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~-~~~wilGEy~ 489 (618)
T 1w63_A 411 LAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQ-VAAWCIGEYG 489 (618)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHH-HHHHHHHHHH
T ss_pred HHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHH-HHHHHHhhhH
Confidence 9999996 67999999999999999999999999999999999999988887777666543 3455555 5899999999
Q ss_pred CCCCC---------------hHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCChhHHHHHHHHHHhhccCCChHHHh
Q 003201 477 QDMQD---------------APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHD 541 (840)
Q Consensus 477 ~~i~~---------------~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~~~~l~~vL~~~~~d~d~dVrd 541 (840)
+.+.+ ..++|+.+++.| .++ +.||.++|||++|++.+.|+ .++.+..+|+.+..|.|+||||
T Consensus 490 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~-~~vr~~~lta~~Kl~~~~~~-~~~~l~~~L~~~~~~~d~evrd 566 (618)
T 1w63_A 490 DLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MST-SVTRGYALTAIMKLSTRFTC-TVNRIKKVVSIYGSSIDVELQQ 566 (618)
T ss_dssp HHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCC-HHHHHHHHHHHHHHHTTCSS-CHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHhcccccccccccCCCHHHHHHHHHHHHhcc-CCC-HHHHHHHHHHHHHHHHhCcc-hHHHHHHHHHHhcCCCCHHHHH
Confidence 86543 356667777776 566 99999999999999999985 5789999999999899999999
Q ss_pred HHHHHHHHccCCHHHHHhhcCCCCCCccc
Q 003201 542 RALFYHRLLQYNVSVAERVVNPPKQAVSV 570 (840)
Q Consensus 542 RA~~Y~rLL~~~~~~a~~vv~~~~p~~~~ 570 (840)
||++||+||..+++ ++++++++||+++.
T Consensus 567 RA~~y~~ll~~~~~-~~~~vl~~~P~~~~ 594 (618)
T 1w63_A 567 RAVEYNALFKKYDH-MRSALLERMPVMEK 594 (618)
T ss_dssp HHHHHHHHHHTTTT-HHHHHHSCCCCCCC
T ss_pred HHHHHHHHHcCcHH-HHHHHhhcCCCCCc
Confidence 99999999988654 66788899999863
No 4
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=100.00 E-value=1.1e-54 Score=478.13 Aligned_cols=323 Identities=15% Similarity=0.239 Sum_probs=227.7
Q ss_pred CCCCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCC-----ccchhhhhhhhccCCCcchHHHHHHHHHHh
Q 003201 16 PSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGID-----VSAVFGEMVMCSATSDIVLKKMCYLYVGNY 90 (840)
Q Consensus 16 ~~~k~Ei~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG~D-----vS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~ 90 (840)
..|.+.++|.| .|++ + |-+..+++++++|+||+|++|++ ++.+|++|+|+++|+|+++|||||||++.|
T Consensus 22 ~~k~~v~qe~r-~fn~---~--~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~ 95 (355)
T 3tjz_B 22 LEKSAVLQEAR-VFNE---T--PINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEM 95 (355)
T ss_dssp CCHHHHHHHGG-GTTS---S--SCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHH-HhcC---C--CCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 45556677743 5544 2 23456778899999999999998 688999999999999999999999999999
Q ss_pred ccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcc
Q 003201 91 AKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (840)
Q Consensus 91 ~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~ 170 (840)
++..+| ++|+||+|+||++|+||++||+|||+||+|+.++|++++.++++++|.|++|||||+|++|++|+|+.+||.+
T Consensus 96 ~~~~~e-~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v 174 (355)
T 3tjz_B 96 SCIAED-VIIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV 174 (355)
T ss_dssp TTTSSC-GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH
T ss_pred CCCHHH-HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH
Confidence 999555 6799999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhcc---CChhHHHHHHHH
Q 003201 171 IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKE---FSEWAQCLVLEL 247 (840)
Q Consensus 171 ~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~---~~~W~Qi~iL~l 247 (840)
.+|++.+.++ ++|+||+|+.+|+.+|++|.++++ ..+.+|+..+.+ .+||+||.+|++
T Consensus 175 --~~~~~~l~~l-l~d~n~~V~~~Al~lL~ei~~~d~----------------~a~~kLv~~l~~~~l~~~~~q~~llr~ 235 (355)
T 3tjz_B 175 --KRWVNEAQEA-ASSDNIMVQYHALGLLYHVRKNDR----------------LAVSKMISKFTRHGLKSPFAYCMMIRV 235 (355)
T ss_dssp --HTTHHHHHHH-TTCSSHHHHHHHHHHHHHHHTTCH----------------HHHHHHHHHHHSSCCSCHHHHHHHHHH
T ss_pred --HHHHHHHHHH-hcCCCccHHHHHHHHHHHHHhhch----------------HHHHHHHHHHhcCCCcChHHHHHHHHH
Confidence 6799999998 799999999999999999986432 235566666655 389999999999
Q ss_pred HHhcCCCC-hhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHH
Q 003201 248 VAKYVPLD-SNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHL 326 (840)
Q Consensus 248 L~~y~p~~-~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l 326 (840)
+..|.+.+ +++..++++.+.++|+|+|++|+|||+++|+.+..... ..+..++++|.+||+++++|+||+||++|
T Consensus 236 l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~----~~~~~a~~~L~~fLss~d~niryvaLr~L 311 (355)
T 3tjz_B 236 ASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA----KELAPAVSVLQLFCSSPKAALRYAAVRTL 311 (355)
T ss_dssp HTCC-----------------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC
T ss_pred HHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH----HHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 99999998 78889999999999999999999999999999865322 23455677899999999999999999999
Q ss_pred HHHHhhCCCccccccc-EEEEccCCCHHHHHHHHHHHHhccCC
Q 003201 327 HILVMRAPFIFASDYK-HFYCQYNEPSYVKKLKLEMLTAVANE 368 (840)
Q Consensus 327 ~~l~~~~p~~~~~~~~-~f~c~~~dp~~IK~~kLdiL~~L~n~ 368 (840)
.++++++|++++.|-. ..-|..|.+.+|...++..|.+.++|
T Consensus 312 ~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittllktg~e 354 (355)
T 3tjz_B 312 NKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTLLKTGSE 354 (355)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHHHHHhhhccCC
Confidence 9999999999998764 45688888999999999999988776
No 5
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.70 E-value=1.4e-15 Score=177.73 Aligned_cols=434 Identities=15% Similarity=0.110 Sum_probs=299.3
Q ss_pred hhhccCCCcchHHHHHHHHHHhccCCCchHH-HHHHHHHhhcCCCChhhHhHHHHHhhCC----ChhhhHHHHHHHHHhc
Q 003201 69 VMCSATSDIVLKKMCYLYVGNYAKVNPDLAL-LTINFLQRDCKDEDPMIRGLALRSLCSL----RVANLVEYLVGPLGLG 143 (840)
Q Consensus 69 i~l~~S~d~~~KkL~YLyl~~~~~~~~dl~l-L~iNtl~KDl~~~Np~ir~LALr~l~~I----~~~~i~e~l~~~v~~~ 143 (840)
.++..+++...|..+...+..++..-++... -++..+.+-++|+|+.+|..|+++++.+ +.+...+.+.+.+.++
T Consensus 132 ~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 211 (588)
T 1b3u_A 132 KRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNL 211 (588)
T ss_dssp HHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHH
Confidence 3566777888888877777777655443322 3456666777899999999999999987 4445667888889999
Q ss_pred cCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccH
Q 003201 144 LKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISK 223 (840)
Q Consensus 144 L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~ 223 (840)
+.|+++.||+.|+.++.++....++....+.+.+.+..+ ++|++..|..+|+.+|..+...-+. +. ...
T Consensus 212 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~-~~d~~~~vR~~a~~~l~~l~~~~~~-------~~---~~~ 280 (588)
T 1b3u_A 212 ASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQA-AEDKSWRVRYMVADKFTELQKAVGP-------EI---TKT 280 (588)
T ss_dssp HTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHH-HTCSSHHHHHHHHHTHHHHHHHHCH-------HH---HHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHHhCc-------cc---chh
Confidence 999999999999999999987755422124467778887 6899999999999999888753211 00 111
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHhcCCC---Ch---hHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHH
Q 003201 224 PVIYYLLNRIKEFSEWAQCLVLELVAKYVPL---DS---NEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQ 297 (840)
Q Consensus 224 ~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~---~~---~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~ 297 (840)
.++..++..+.+.++..+......|..+... +. .....+++.+...+++.+..|...++.++..+...... .
T Consensus 281 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~ 358 (588)
T 1b3u_A 281 DLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--D 358 (588)
T ss_dssp THHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--H
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--h
Confidence 2455566667788888877777766655322 11 12455777788888888888888888877766432111 1
Q ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCcccccccEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHH
Q 003201 298 QVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTE 377 (840)
Q Consensus 298 ~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~E 377 (840)
.....+.+.+..++.+.++++|..++.++..+....+. . .....++..
T Consensus 359 ~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~----------------~----------------~~~~~~lp~ 406 (588)
T 1b3u_A 359 NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI----------------R----------------QLSQSLLPA 406 (588)
T ss_dssp HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH----------------H----------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH----------------H----------------HHHHHHHHH
Confidence 22345667778888888899999999988888764321 0 012456666
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHHHhhcCCh---HHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCc--chhHHHHHH
Q 003201 378 LCEYAANVDIPIARESIRAVGKIALQQYDV---NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQW--SHDCIAVVG 452 (840)
Q Consensus 378 L~~y~~~~d~~~~~~~i~aI~~la~k~~~~---~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~--~~~~~~~l~ 452 (840)
|..++.+.+..++..++..|+.++..++.. ...+..++.++......|...++..+..++...+.. .+.++..+.
T Consensus 407 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~ 486 (588)
T 1b3u_A 407 IVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVL 486 (588)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHH
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 677777778888888899999888776431 346677778777766677788888888877665431 112222222
Q ss_pred hhhcccCCchHHHHHHHHHHcCcCCCCCC---hHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCChhH-HHHHHHHH
Q 003201 453 SISSQNVQEPKAKAALIWMLGEYSQDMQD---APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPET-QKVLGAAL 528 (840)
Q Consensus 453 ~l~~~~i~~~~ak~a~iwilGEy~~~i~~---~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~-~~~l~~vL 528 (840)
.+. .-.++..|.+++|.+|+.+..+.. .+.++..+.+.+.+.. +.||...+.++.+++.....+. .+.+...|
T Consensus 487 ~~~--~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l 563 (588)
T 1b3u_A 487 AMS--GDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPV-ANVRFNVAKSLQKIGPILDNSTLQSEVKPIL 563 (588)
T ss_dssp HTT--TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSC-HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred HHh--hCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCC-chHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 222 124567888899999988765432 2456666777777777 9999999999999986554332 23455566
Q ss_pred HhhccCCChHHHhHHHHHHHHc
Q 003201 529 AAGLADFHQDVHDRALFYHRLL 550 (840)
Q Consensus 529 ~~~~~d~d~dVrdRA~~Y~rLL 550 (840)
....+|.|++||+.|..-..-+
T Consensus 564 ~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 564 EKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHcCCCchhHHHHHHHHHHHh
Confidence 6667899999999999766544
No 6
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=99.63 E-value=7.2e-16 Score=161.99 Aligned_cols=112 Identities=15% Similarity=0.250 Sum_probs=101.1
Q ss_pred eeccCCCCChHHHHHHhhccCcccceeeeeCccCccCCCCHHHHHHHhhhcCEEEEeecCCCCceEEEEeeeccCCCceE
Q 003201 720 KLNSKAILDPGTFQQKWRQLPISLSQEFSLSPEGVAALTTPQALLWHMQGHSIHCIASGGHSPNFKFFFFAQKAEESSNF 799 (840)
Q Consensus 720 ~L~~~~~l~~~~Fq~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~I~tiAsg~~~~~~k~y~yaq~~~~~~~f 799 (840)
.|.|+|.|++++|.++|+++|+..+.+..+. +. ..++|.+.++|+++|||+|| ++..+++.++|||.|++++.||
T Consensus 146 l~~e~g~m~~~~F~~~Wk~ip~~nE~~~~i~--~~--~~~~~~i~~kL~~~nif~Va-~r~~~~q~~ly~S~kt~n~i~v 220 (258)
T 2g30_A 146 LFVEDGKMERQVFLATWKDIPNENELQFQIK--EC--HLNADTVSSKLQNNNVYTIA-KRNVEGQDMLYQSLKLTNGIWI 220 (258)
T ss_dssp GBCSCCCCCHHHHHHHHHHSCGGGCEEEEET--TC--CCCHHHHHHHHHHTTCEEEE-EEEETTEEEEEEEEEBTTSCEE
T ss_pred hcCCcCccCHHHHHHHHhhCCCccceeEecc--cC--cCCHHHHHHHHHHCCeEEEE-eecCCCCceEEEEEEccCCcEE
Confidence 3789999999999999999999965554443 33 36789999999999999999 7888899999999999999999
Q ss_pred EEEEEEecCCCceEEEEecCChhhHHHHHHHHHHHHh
Q 003201 800 LVECIINTSSAKAQVKIKADDQSTSQAFSDVFQSALS 836 (840)
Q Consensus 800 L~El~i~~~~~~~~~tvKs~~~~~~~~f~~~~~~~l~ 836 (840)
|+|+.++++++.+++++||++++.++.|.+.++++|+
T Consensus 221 L~el~~~~~~~~v~l~vks~~~~i~~li~~~~~~~l~ 257 (258)
T 2g30_A 221 LAELRIQPGNPNYTLSLKCRAPEVSQYIYQVYDSILK 257 (258)
T ss_dssp EEEEEECSSCSSEEEEEEESSGGGHHHHHHHHHHHHH
T ss_pred EEEEEEccCCCcEEEEEecCCchHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999986
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.57 E-value=2.9e-12 Score=157.65 Aligned_cols=522 Identities=13% Similarity=0.089 Sum_probs=308.0
Q ss_pred cHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcC---CCccchhhhhhhhccCCCcchHHHHHHHHHHhccCCCch
Q 003201 21 EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIG---IDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDL 97 (840)
Q Consensus 21 Ei~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG---~DvS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl 97 (840)
+...||..+-+...+. + ..-|..+..+|+.+... .....+.+.++.++.+.+...|..+...+..+.+..++.
T Consensus 87 ~~~~ik~~ll~~l~~~---~-~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~ 162 (852)
T 4fdd_A 87 VTDFIKSECLNNIGDS---S-PLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI 162 (852)
T ss_dssp HHHHHHHHHHTTTTCS---S-HHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHcCC---C-HHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 4556777776654432 2 23344444555554421 244457788888999999888888887777766555543
Q ss_pred ---------HHHHHHHHHhhcCCCChhhHhHHHHHhhCCCh------hhhHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Q 003201 98 ---------ALLTINFLQRDCKDEDPMIRGLALRSLCSLRV------ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKL 162 (840)
Q Consensus 98 ---------~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~------~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl 162 (840)
.--++..|.+=++|+++.+|..|+++++.+.. ....+.+++.+.+.+.|+++.||+.|+-|+.++
T Consensus 163 ~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l 242 (852)
T 4fdd_A 163 LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVML 242 (852)
T ss_dssp HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred hchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 23467778888899999999999999998752 123456778888889999999999999999999
Q ss_pred HhhcCCcccC--CCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhh-------
Q 003201 163 YHISAPTCID--ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI------- 233 (840)
Q Consensus 163 ~~~~p~~~~~--~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l------- 233 (840)
...+|+.+.. +++++.+..+ +.|.|+.|...|+..+..+++... +.....-....++..++..+
T Consensus 243 ~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~vr~~a~e~l~~l~~~~~------~~~~~~~~~~~l~p~ll~~l~~~e~d~ 315 (852)
T 4fdd_A 243 LEVRMDRLLPHMHNIVEYMLQR-TQDQDENVALEACEFWLTLAEQPI------CKDVLVRHLPKLIPVLVNGMKYSDIDI 315 (852)
T ss_dssp HHHCHHHHGGGHHHHHHHHHHH-HTCSSHHHHHHHHHHHHHHTTSTT------HHHHHTTTHHHHHHHHHHHTSCCHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHH-ccCCcHHHHHHHHHHHHHHhcchh------HHHHHHHHHHHHHHHHHHHcCCcHhHH
Confidence 9988876521 2344555555 589999999999988888875321 11100001112344444444
Q ss_pred ----ccC----------ChhHH----HHHHHHHHhcCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchh
Q 003201 234 ----KEF----------SEWAQ----CLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDV 295 (840)
Q Consensus 234 ----~~~----------~~W~Q----i~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~ 295 (840)
.+. ..|.. ...|..+....+ ..-...+++.+...+++.+..+..+|+.++-.+.....+.
T Consensus 316 ~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~ 393 (852)
T 4fdd_A 316 ILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQG 393 (852)
T ss_dssp HHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHH
T ss_pred HHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHH
Confidence 120 34542 334444444433 2334567888888899999999999999988886543321
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCC-ccccccc----EEE-EccCCCHHHHHHHHHHHHhccCC-
Q 003201 296 HQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF-IFASDYK----HFY-CQYNEPSYVKKLKLEMLTAVANE- 368 (840)
Q Consensus 296 ~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~-~~~~~~~----~f~-c~~~dp~~IK~~kLdiL~~L~n~- 368 (840)
....+..+.+.|..+++++++.+|+.+...+..+....+. ....++. .+. +..+++..+|..+...|..++..
T Consensus 394 ~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 394 MIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp HGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 1123455667777788877888888888777776653211 1111111 111 12233445555554444443311
Q ss_pred -----CCHHHHHHHHHHhhh------------------------------------------------------------
Q 003201 369 -----SNTYEIVTELCEYAA------------------------------------------------------------ 383 (840)
Q Consensus 369 -----~Nv~~Iv~EL~~y~~------------------------------------------------------------ 383 (840)
.-+..|+..|...+.
T Consensus 474 ~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~ 553 (852)
T 4fdd_A 474 CTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLS 553 (852)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHH
T ss_pred hHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 011122222111111
Q ss_pred -------------------------------------------cCCHHHHHHHHHHHHHHHhhcC-ChH------HHHHH
Q 003201 384 -------------------------------------------NVDIPIARESIRAVGKIALQQY-DVN------AIVDR 413 (840)
Q Consensus 384 -------------------------------------------~~d~~~~~~~i~aI~~la~k~~-~~~------~~v~~ 413 (840)
..|.+++..++..||.++.... +.. .++..
T Consensus 554 ~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~ 633 (852)
T 4fdd_A 554 SVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTL 633 (852)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHH
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHH
Confidence 1144566666666666666553 211 24555
Q ss_pred HHHHhhhcCchhhHHHHHHHHHHHhhCCCcch-hHHHHHHhhhcc-cCCchHHHHHHHHHHcCcCCCCCC-----hHHHH
Q 003201 414 LLQFLEMEKDYVTAEALVLVKDLLRKYPQWSH-DCIAVVGSISSQ-NVQEPKAKAALIWMLGEYSQDMQD-----APYIL 486 (840)
Q Consensus 414 Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~-~~~~~l~~l~~~-~i~~~~ak~a~iwilGEy~~~i~~-----~~~il 486 (840)
+++++......|.+++...+.++.+.+++... +.-.++..+... ...++.++..++|.+|+++..+.+ ...++
T Consensus 634 l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il 713 (852)
T 4fdd_A 634 MYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVL 713 (852)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHH
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 66666555556777777777777776664322 221222222110 224567888889999998654421 44566
Q ss_pred HHHHHhhccC-CcHHHHHHHHHHHhHHhhcCChhHHHHHHHHHH----hhccCCChHHHhHHHHHH-HHccCCHH
Q 003201 487 ESLTENWEEE-PSAEVRLHLLTAVMKCFFKRPPETQKVLGAALA----AGLADFHQDVHDRALFYH-RLLQYNVS 555 (840)
Q Consensus 487 ~~l~~~~~~e-~~~~vk~~lLta~~Kl~~~~p~e~~~~l~~vL~----~~~~d~d~dVrdRA~~Y~-rLL~~~~~ 555 (840)
..++..+... .+..++-....++.|+..++|....+.+..++. ....-.|.+.++-|+... .|+..+|+
T Consensus 714 ~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 714 HQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChH
Confidence 6666655432 226788888899999988887544344444444 222235666676666543 44444443
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.52 E-value=1.7e-12 Score=159.86 Aligned_cols=401 Identities=14% Similarity=0.134 Sum_probs=278.8
Q ss_pred hhhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCC-------hhhhHHHHHHHH
Q 003201 68 MVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR-------VANLVEYLVGPL 140 (840)
Q Consensus 68 Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~-------~~~i~e~l~~~v 140 (840)
++....++|-..||-+.-.+..+ +.+|+....... +..++.+.++.+|-+|.-.+-+.- .++.-+.+-..+
T Consensus 18 ~l~~~~s~d~~~r~~Ae~~L~~~-~~~p~~~~~l~~-il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~l 95 (852)
T 4fdd_A 18 LLKESQSPDTTIQRTVQQKLEQL-NQYPDFNNYLIF-VLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSEC 95 (852)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHH-TTSHHHHHHHHH-HHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHH-HhCCCHHHHHHH-HHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 34444678889999999999876 557876443333 334557788999988875554421 345677888888
Q ss_pred HhccCCCChHHHHHHHHHHHHHHhhcC-CcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHh
Q 003201 141 GLGLKDNNSYVRTVAVIGVLKLYHISA-PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREA 219 (840)
Q Consensus 141 ~~~L~d~~pyVRK~Aala~~kl~~~~p-~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~ 219 (840)
.++|.|+++.||++|+.++..+.+.++ +.- +++++.|..+ +.+.|+.+.-.|+.+|..|++..+.
T Consensus 96 l~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w--p~ll~~L~~~-l~~~~~~~r~~al~~L~~i~~~~~~----------- 161 (852)
T 4fdd_A 96 LNNIGDSSPLIRATVGILITTIASKGELQNW--PDLLPKLCSL-LDSEDYNTCEGAFGALQKICEDSAE----------- 161 (852)
T ss_dssp HTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC--TTHHHHHHHH-HSCSSHHHHHHHHHHHHHHHHHHTT-----------
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhcCcccc--HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHhHH-----------
Confidence 889999999999999999999999863 333 6677788887 6888999998998888888653221
Q ss_pred hccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHH
Q 003201 220 LISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQV 299 (840)
Q Consensus 220 li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~ 299 (840)
. +.. .+. ......++..+...+++.++.|..+|++++..+....+......
T Consensus 162 ~---------~~~-----------------~~~---~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~ 212 (852)
T 4fdd_A 162 I---------LDS-----------------DVL---DRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH 212 (852)
T ss_dssp H---------HHH-----------------CSS---SSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS
T ss_pred H---------hch-----------------hhh---cchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 0 000 000 01133455556666777788899999998876654332211112
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCcccccccEEE-----EccCCCHHHHHHHHHHHHhccCCC-----
Q 003201 300 YERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFY-----CQYNEPSYVKKLKLEMLTAVANES----- 369 (840)
Q Consensus 300 l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~-----c~~~dp~~IK~~kLdiL~~L~n~~----- 369 (840)
+..+.+.|..+++++++++|..+++.+..++..+|..+.+|+..++ +..+++..+|..+++.+..++...
T Consensus 213 ~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~ 292 (852)
T 4fdd_A 213 IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDV 292 (852)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHH
Confidence 3346667778888889999999999999999999988888875432 346677899999999999999754
Q ss_pred ---CHHHHHHHHHHhh-----------hc-----------CCHHHHHHHHHHHHHHHhhcCCh--HHHHHHHHHHhhhcC
Q 003201 370 ---NTYEIVTELCEYA-----------AN-----------VDIPIARESIRAVGKIALQQYDV--NAIVDRLLQFLEMEK 422 (840)
Q Consensus 370 ---Nv~~Iv~EL~~y~-----------~~-----------~d~~~~~~~i~aI~~la~k~~~~--~~~v~~Ll~LL~~~~ 422 (840)
.+..++.-|...+ .+ .+..+++.+..+++.++...++. ...+..+.+++....
T Consensus 293 ~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~ 372 (852)
T 4fdd_A 293 LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHE 372 (852)
T ss_dssp HTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCC
Confidence 3446677776665 22 11135888999999999887642 345666667777666
Q ss_pred chhhHHHHHHHHHHHhhCCCcc----hhHHHHHHhhhcccCCchHHHHHHHHHHcCcCCCC------CChHHHHHHHHHh
Q 003201 423 DYVTAEALVLVKDLLRKYPQWS----HDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDM------QDAPYILESLTEN 492 (840)
Q Consensus 423 ~~v~~e~v~~i~~il~~~p~~~----~~~~~~l~~l~~~~i~~~~ak~a~iwilGEy~~~i------~~~~~il~~l~~~ 492 (840)
..+...++..+..|....++.. ..++..+...+.+ .++.++.+++|.+|.|+... .....++..+++.
T Consensus 373 ~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d--~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~ 450 (852)
T 4fdd_A 373 WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD--KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKR 450 (852)
T ss_dssp HHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 6788888888888775443211 2223333333322 46789999999999998743 1245677888877
Q ss_pred hccCCcHHHHHHHHHHHhHHhhcC
Q 003201 493 WEEEPSAEVRLHLLTAVMKCFFKR 516 (840)
Q Consensus 493 ~~~e~~~~vk~~lLta~~Kl~~~~ 516 (840)
..+.+ +.||.....|+..+.-..
T Consensus 451 L~d~~-~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 451 ILDSN-KRVQEAACSAFATLEEEA 473 (852)
T ss_dssp HTCSS-HHHHHHHHHHHHHHHHHH
T ss_pred HhCCC-HHHHHHHHHHHHHHHHHh
Confidence 77666 999999999998887443
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.50 E-value=1.9e-12 Score=151.13 Aligned_cols=505 Identities=12% Similarity=0.079 Sum_probs=316.0
Q ss_pred hhhhhccCCCcchHHHHHHHHHHhccC-CCchHH-HHHHHHHhhcCCCChhhHhHHHHHhhCCC----hhhhHHHHHHHH
Q 003201 67 EMVMCSATSDIVLKKMCYLYVGNYAKV-NPDLAL-LTINFLQRDCKDEDPMIRGLALRSLCSLR----VANLVEYLVGPL 140 (840)
Q Consensus 67 ~Vi~l~~S~d~~~KkL~YLyl~~~~~~-~~dl~l-L~iNtl~KDl~~~Np~ir~LALr~l~~I~----~~~i~e~l~~~v 140 (840)
.++..+.++|...|+.+-..+...+.. .++-.. -++..+ +++.|+++.+|..|.+.++.+. .++..+.+.+.+
T Consensus 14 ~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L-~~~~d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L 92 (588)
T 1b3u_A 14 VLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFL-TDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPL 92 (588)
T ss_dssp HHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHH-HHTCCCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHH
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHH-HHhcCCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 334455555555555554444433221 111111 112222 3455788999999999999875 345677788888
Q ss_pred HhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhh
Q 003201 141 GLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREAL 220 (840)
Q Consensus 141 ~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~l 220 (840)
..++.|+++.||+.|+.++.++....|.....+.+.+.+..+ ..++++.+...|+.++..+...-+. ..
T Consensus 93 ~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l-~~~~~~~~R~~a~~~l~~~~~~~~~----~~------ 161 (588)
T 1b3u_A 93 ESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRL-AGGDWFTSRTSACGLFSVCYPRVSS----AV------ 161 (588)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHH-HTCSSHHHHHHHGGGHHHHTTTSCH----HH------
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHHhcCH----HH------
Confidence 888899999999999999999988766432223466777776 5788888888888888877643221 00
Q ss_pred ccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHH
Q 003201 221 ISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSN--EIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQ 298 (840)
Q Consensus 221 i~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~--e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~ 298 (840)
.+.++..+...+.+.++..+...++.|..+...-+. ....+++.+...+++.+..|...|+.++..+....+. ..
T Consensus 162 -~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~ 238 (588)
T 1b3u_A 162 -KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ--ED 238 (588)
T ss_dssp -HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH--HH
T ss_pred -HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH--HH
Confidence 112333444455778888888888888876533222 2345777788888888888888888887666432221 12
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCC-Ccccccc-cEEE-EccCCCHHHHHHHHHHHHhccCCC------
Q 003201 299 VYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP-FIFASDY-KHFY-CQYNEPSYVKKLKLEMLTAVANES------ 369 (840)
Q Consensus 299 ~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p-~~~~~~~-~~f~-c~~~dp~~IK~~kLdiL~~L~n~~------ 369 (840)
....+.+.+..++++++..+|+.+...+..+....+ ..+..++ ..|. ...|++..+|..+..-|-.++..-
T Consensus 239 ~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 318 (588)
T 1b3u_A 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRE 318 (588)
T ss_dssp HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhh
Confidence 233455666778888888999999999998886532 2221221 1111 224566789998888777765432
Q ss_pred --CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCh---HHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCc-
Q 003201 370 --NTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV---NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQW- 443 (840)
Q Consensus 370 --Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~---~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~- 443 (840)
....++.-+..++.+.+..+|+.++.+++.++..+.+. ...+..++.++....+.|...++..+..+....+..
T Consensus 319 ~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 398 (588)
T 1b3u_A 319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ 398 (588)
T ss_dssp HHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHH
Confidence 24567777778888889999999999999988766532 235566777777666677777777777766654321
Q ss_pred -chhHHHHHHhhhcccCCchHHHHHHHHHHcCcCCCCCC---hHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCChh
Q 003201 444 -SHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD---APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPE 519 (840)
Q Consensus 444 -~~~~~~~l~~l~~~~i~~~~ak~a~iwilGEy~~~i~~---~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e 519 (840)
....+..+..+..+ .++..+.++++.+|.++..... .++++..+...+.+.. ..||...+.++.++....+++
T Consensus 399 ~~~~~lp~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~ 475 (588)
T 1b3u_A 399 LSQSLLPAIVELAED--AKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHV-YAIREAATSNLKKLVEKFGKE 475 (588)
T ss_dssp HHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHhCch
Confidence 12233333333322 4567888888888887643322 3567777777776666 899999999999887655433
Q ss_pred --HHHHHHHHHHhhccCCChHHHhHHHHHHHHccC--CHHH-HHhhcCCCCCCccccccCCCHHHHHHHHHhhCcchhhc
Q 003201 520 --TQKVLGAALAAGLADFHQDVHDRALFYHRLLQY--NVSV-AERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVY 594 (840)
Q Consensus 520 --~~~~l~~vL~~~~~d~d~dVrdRA~~Y~rLL~~--~~~~-a~~vv~~~~p~~~~~~~~~~~~~~~~l~~~~~tls~vy 594 (840)
...++..+. ....+.+..+|.-|.....-+.. +.+. ...++ |.+.....+.+++++...+.-++.+...+
T Consensus 476 ~~~~~llp~l~-~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~----~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 550 (588)
T 1b3u_A 476 WAHATIIPKVL-AMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHML----PTVLRMAGDPVANVRFNVAKSLQKIGPIL 550 (588)
T ss_dssp HHHHHTHHHHH-HTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTH----HHHHHGGGCSCHHHHHHHHHHHHHHGGGS
T ss_pred hHHHHHHHHHH-HHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHH----HHHHhhCCCCCchHHHHHHHHHHHHHHHh
Confidence 122333333 33457788898888766544321 1111 11111 22211223445677777777677666544
No 10
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.48 E-value=4.2e-13 Score=158.80 Aligned_cols=419 Identities=12% Similarity=0.093 Sum_probs=255.4
Q ss_pred HHHHHhhcCCCChhhHhHHHHHhhCC--ChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHH
Q 003201 102 INFLQRDCKDEDPMIRGLALRSLCSL--RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (840)
Q Consensus 102 iNtl~KDl~~~Np~ir~LALr~l~~I--~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L 179 (840)
++-+++.+.++|+..|.-|++-+-.+ ...++ ..+...+.+++.++++.+||.+.+++..+.+.+|+.. .-.++.+
T Consensus 15 ~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~-~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~--~l~~n~l 91 (591)
T 2vgl_B 15 IFELKAELNNEKKEKRKEAVKKVIAAMTVGKDV-SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA--IMAVNSF 91 (591)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC-GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH--HTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH--HHHHHHH
Confidence 45677777777776666554443321 11122 2334556667778888888888888877777777664 2345666
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHH
Q 003201 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI 259 (840)
Q Consensus 180 ~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~ 259 (840)
.+- +.|+|+.|.+.|+.+|..|.. +. +...++..+.+.+.+.+|..+-+....+.+....+++..
T Consensus 92 ~kd-L~~~n~~ir~~AL~~L~~i~~--~~------------~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~ 156 (591)
T 2vgl_B 92 VKD-CEDPNPLIRALAVRTMGCIRV--DK------------ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV 156 (591)
T ss_dssp GGG-SSSSSHHHHHHHHHHHHTCCS--GG------------GHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHH-cCCCCHHHHHHHHHHHHcCCh--HH------------HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc
Confidence 665 577888888888777776641 11 111234445566677777777777776666544444433
Q ss_pred H--HHHHHHHHHhccCChHHHHHHHHHHHhccCCCchh-HHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCc
Q 003201 260 F--DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDV-HQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI 336 (840)
Q Consensus 260 ~--~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~-~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~ 336 (840)
. .+++.+..+|+..++.|+.+|+.++..+....++. ...+.......|++.+...++-.+-..|+.+..+....+..
T Consensus 157 ~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~ 236 (591)
T 2vgl_B 157 EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE 236 (591)
T ss_dssp HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH
T ss_pred ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH
Confidence 3 57888999999999999999999999886544321 00001112334455555566666665555544332111111
Q ss_pred ccccccEE-EEccCCCHHHHHHHHHHHHhccC-----CCCHHHHHHHHHH---hhhcCCHHHHHHHHHHHHHHHhhcCCh
Q 003201 337 FASDYKHF-YCQYNEPSYVKKLKLEMLTAVAN-----ESNTYEIVTELCE---YAANVDIPIARESIRAVGKIALQQYDV 407 (840)
Q Consensus 337 ~~~~~~~f-~c~~~dp~~IK~~kLdiL~~L~n-----~~Nv~~Iv~EL~~---y~~~~d~~~~~~~i~aI~~la~k~~~~ 407 (840)
...-+..+ -+..+.+..|+..+...+..+.+ ++-+..++..+.. .+.+.|.+++..++++|+.++.++|+.
T Consensus 237 ~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~ 316 (591)
T 2vgl_B 237 AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEI 316 (591)
T ss_dssp HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCST
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHH
Confidence 01111111 13456667899999999999874 4456655544332 445688999999999999999988863
Q ss_pred -HHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchhHHHHHHhhhcccCCchHHHHHHHHHHcCcCCCCC-ChHHH
Q 003201 408 -NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQ-DAPYI 485 (840)
Q Consensus 408 -~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~~~~l~~l~~~~i~~~~ak~a~iwilGEy~~~i~-~~~~i 485 (840)
...+..++.+.+ ...+|..+++..+..+.. ..+. +.++..+..++.+ .+++.+..++|-||..+...+ +...+
T Consensus 317 ~~~~~~~~~~~~~-d~~~Ir~~al~~L~~l~~-~~nv-~~iv~~L~~~l~~--~d~~~r~~~v~aI~~la~~~~~~~~~~ 391 (591)
T 2vgl_B 317 LKQEIKVFFVKYN-DPIYVKLEKLDIMIRLAS-QANI-AQVLAELKEYATE--VDVDFVRKAVRAIGRCAIKVEQSAERC 391 (591)
T ss_dssp TTTCTTTTSCCTT-SCHHHHHHHHHHHHHTCC-SSTH-HHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhheeccC-ChHHHHHHHHHHHHHHCC-hhhH-HHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHhChhHHHHH
Confidence 222222211112 224666777666655442 1122 1222223333221 367788888999999887764 35677
Q ss_pred HHHHHHhhccCCcHHHHHHHHHHHhHHhhcCChhHHHHHHHHHHhhccCCChHHHhHHH
Q 003201 486 LESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRAL 544 (840)
Q Consensus 486 l~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~~~~l~~vL~~~~~d~d~dVrdRA~ 544 (840)
++.+.+-+.... ..++...+.++..+.-+.|......+..+.+......++++|..+.
T Consensus 392 v~~Ll~ll~~~~-~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~ 449 (591)
T 2vgl_B 392 VSTLLDLIQTKV-NYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMI 449 (591)
T ss_dssp HHHHHHHHHTCC-HHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHH
T ss_pred HHHHHHHHcccc-hHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 888887777777 8888888888888887888643445556655544456889865554
No 11
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.43 E-value=4.4e-11 Score=152.91 Aligned_cols=475 Identities=13% Similarity=0.124 Sum_probs=292.3
Q ss_pred chhhhhhhhccCCCcchHHHHHHHHHHhccCC-----CchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCC---hhhhHH
Q 003201 63 AVFGEMVMCSATSDIVLKKMCYLYVGNYAKVN-----PDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR---VANLVE 134 (840)
Q Consensus 63 ~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~-----~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~---~~~i~e 134 (840)
..+...+.-+.++|-..|+++--.+......+ ++..--++..+.+-+.|+|+.+|..|+++++.+. .+...+
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~ 85 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE 85 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 34667777778888888888876666665432 2333356677888889999999999998887753 345678
Q ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcc--------cCCCchHHHHHHHhc-CCChhHHHHHHHHHHHHHhh
Q 003201 135 YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC--------IDADFPPTLKHLMLN-DPDPQVVANCLSALQEIWSL 205 (840)
Q Consensus 135 ~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~--------~~~~~~~~L~~lLL~-D~d~~Vv~~al~~L~eI~~~ 205 (840)
.+.+.+.+++.|+++.||.+|+.|+..+....+... ..+.+++.|... +. +.++.+...|+.+|.+++..
T Consensus 86 ~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~-l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 86 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSA-IAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHH-HSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999987655420 014456677776 46 48899999999999999864
Q ss_pred ccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHH-HHHHHHHHHHhccCC-hHHH---HH
Q 003201 206 EASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI-FDIMNLLEDRLQHAN-GAVV---LS 280 (840)
Q Consensus 206 ~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~-~~il~~l~~~L~~~n-~aVv---le 280 (840)
.+..... ..+.++..|+..+.+.+++.+...++.+..+....++.. ..+++.+...|.+.+ ..+. ++
T Consensus 165 ~~~~l~~--------~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~ 236 (1230)
T 1u6g_C 165 QGGLLVN--------FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQ 236 (1230)
T ss_dssp TCSSCTT--------THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred hHhHHHH--------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence 4331100 113456777788888899999999999998876543322 234565655554432 2222 33
Q ss_pred HHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCcccccccEE------EEc-------
Q 003201 281 TIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHF------YCQ------- 347 (840)
Q Consensus 281 aik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f------~c~------- 347 (840)
++..+...... .+. ..+..+.+.+...+.+.++++|-.++..+..++...|.-+.+++..+ ...
T Consensus 237 ~l~~l~~~~~~--~~~-~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~ 313 (1230)
T 1u6g_C 237 CIAAISRQAGH--RIG-EYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNY 313 (1230)
T ss_dssp HHHHHHHHSSG--GGT-TSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-----
T ss_pred HHHHHHHHhHH--HHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCC
Confidence 33333332111 110 11234667777888888899999999999999887775443321100 000
Q ss_pred -----------------------------cCCCHHHHHHHHHHHHhccCCC--CHHH----HHHHHHHhhhcCCHHHHHH
Q 003201 348 -----------------------------YNEPSYVKKLKLEMLTAVANES--NTYE----IVTELCEYAANVDIPIARE 392 (840)
Q Consensus 348 -----------------------------~~dp~~IK~~kLdiL~~L~n~~--Nv~~----Iv~EL~~y~~~~d~~~~~~ 392 (840)
.+....+|..+++.|..++... .+.. ++..|..++.+.+.+++..
T Consensus 314 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~ 393 (1230)
T 1u6g_C 314 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKAD 393 (1230)
T ss_dssp -------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHH
T ss_pred cccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHH
Confidence 0001247888999988887632 2333 3455556667778899999
Q ss_pred HHHHHHHHHhhcCC--------------------h----HHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcc-hh-
Q 003201 393 SIRAVGKIALQQYD--------------------V----NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWS-HD- 446 (840)
Q Consensus 393 ~i~aI~~la~k~~~--------------------~----~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~-~~- 446 (840)
++.+++.+...... . ..++..+++.+......+...++..+..++...|+.. .+
T Consensus 394 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l 473 (1230)
T 1u6g_C 394 VFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI 473 (1230)
T ss_dssp HHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH
T ss_pred HHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH
Confidence 99999888765421 0 1234445555666666777788888999988877532 22
Q ss_pred --HHHHHHhhhcccCCchHHHHHHHHHHcCcCCCCC-C-----hHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhc-CC
Q 003201 447 --CIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQ-D-----APYILESLTENWEEEPSAEVRLHLLTAVMKCFFK-RP 517 (840)
Q Consensus 447 --~~~~l~~l~~~~i~~~~ak~a~iwilGEy~~~i~-~-----~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~-~p 517 (840)
++..+...+.+.-..+.++..++-.++....... + .+.++..++..+.+.. ..|+...+.++..+.-. .+
T Consensus 474 ~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~-~~v~~~al~~l~~l~~~~~~ 552 (1230)
T 1u6g_C 474 PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPF-YKITSEALLVTQQLVKVIRP 552 (1230)
T ss_dssp HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHhcC
Confidence 2222333322222223444333222222211111 1 1234555666665655 77877766666555421 11
Q ss_pred ----------hhHHHHHHHHHHhhc-cCCChHHHhHHHHHHHHc
Q 003201 518 ----------PETQKVLGAALAAGL-ADFHQDVHDRALFYHRLL 550 (840)
Q Consensus 518 ----------~e~~~~l~~vL~~~~-~d~d~dVrdRA~~Y~rLL 550 (840)
+-...++..++.... .|.+++||+.|......+
T Consensus 553 ~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L 596 (1230)
T 1u6g_C 553 LDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQI 596 (1230)
T ss_dssp SSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 113445555555544 578999999998665443
No 12
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.39 E-value=4.7e-10 Score=137.11 Aligned_cols=517 Identities=11% Similarity=0.051 Sum_probs=305.8
Q ss_pred cHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcC----CCccchhhhhhhhccCC-CcchHHHHHHHHHHhccCC-
Q 003201 21 EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIG----IDVSAVFGEMVMCSATS-DIVLKKMCYLYVGNYAKVN- 94 (840)
Q Consensus 21 Ei~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG----~DvS~lF~~Vi~l~~S~-d~~~KkL~YLyl~~~~~~~- 94 (840)
+...||..|-+...+.+ ..- |..+..+|..+... .....+++.++.++.++ +...|..+...+..+.+.-
T Consensus 92 ~~~~ik~~ll~~l~~~~---~~v-r~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~ 167 (861)
T 2bpt_A 92 AKNQIKTNALTALVSIE---PRI-ANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESAD 167 (861)
T ss_dssp HHHHHHHHHHHHHTCSS---HHH-HHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHCCCc---hHH-HHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC
Confidence 44566666666554322 222 33333344433221 23455778888888887 7777776655555544321
Q ss_pred C------chHHHHHHHHHhhcCCC--ChhhHhHHHHHhhCC---Chhh-----hHHHHHHHHHhccCCCChHHHHHHHHH
Q 003201 95 P------DLALLTINFLQRDCKDE--DPMIRGLALRSLCSL---RVAN-----LVEYLVGPLGLGLKDNNSYVRTVAVIG 158 (840)
Q Consensus 95 ~------dl~lL~iNtl~KDl~~~--Np~ir~LALr~l~~I---~~~~-----i~e~l~~~v~~~L~d~~pyVRK~Aala 158 (840)
+ ...--++..+.+-+.|+ ++.+|..|+++++.+ .... ..+++.+.+.+.+.|+++-||+.|+.+
T Consensus 168 ~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~ 247 (861)
T 2bpt_A 168 PQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGC 247 (861)
T ss_dssp TTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 1 12334556666667777 899999999999874 1111 135678888888999999999999999
Q ss_pred HHHHHhhcCCcccC--C-CchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHH---------HHHHHhhccHHHH
Q 003201 159 VLKLYHISAPTCID--A-DFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEA---------SREREALISKPVI 226 (840)
Q Consensus 159 ~~kl~~~~p~~~~~--~-~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~---------~~~~~~li~~~~~ 226 (840)
+.++...+|+.+.. . .+++.+... +.|.|+.|...|+..+..+.........+. ++.........++
T Consensus 248 l~~l~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 326 (861)
T 2bpt_A 248 LCKIMSKYYTFMKPYMEQALYALTIAT-MKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVV 326 (861)
T ss_dssp HHHHHHHHGGGCHHHHHHTHHHHHHHH-TTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHH
Confidence 99999988876521 1 444555555 589999999999999888875421000000 0000000113355
Q ss_pred HHHHHhhccC------ChhHH-HHHHHHH---HhcCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCc-hh
Q 003201 227 YYLLNRIKEF------SEWAQ-CLVLELV---AKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT-DV 295 (840)
Q Consensus 227 ~~Ll~~l~~~------~~W~Q-i~iL~lL---~~y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~-~~ 295 (840)
..|+..+.+. ++|.. ....+.| ....+ ......+++.+...+++.+..+..+|+.++-.+..... +.
T Consensus 327 ~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~ 404 (861)
T 2bpt_A 327 PNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQ 404 (861)
T ss_dssp HHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHH
T ss_pred HHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHH
Confidence 5666666542 34643 2233333 33222 23355677888888888888888888888887765432 22
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCcc--cccc----cEEE-EccCCCHHHHHHHHHHHHhccCC
Q 003201 296 HQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIF--ASDY----KHFY-CQYNEPSYVKKLKLEMLTAVANE 368 (840)
Q Consensus 296 ~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~--~~~~----~~f~-c~~~dp~~IK~~kLdiL~~L~n~ 368 (840)
....+..+.+.|...+.+.++.+|..++..+..++...+.-+ ..++ ..++ +..+ +..++..+...|..++..
T Consensus 405 ~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~ 483 (861)
T 2bpt_A 405 RTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD-HPKVATNCSWTIINLVEQ 483 (861)
T ss_dssp HHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHh
Confidence 234456677788888888899999999999888886533211 1122 1121 2233 367888777777665532
Q ss_pred ----------CCHHHHHHHHHHhhhcCC--HHHHHHHHHHHHHHHhhcCC-hHHHH----HHHHHHhhhc----------
Q 003201 369 ----------SNTYEIVTELCEYAANVD--IPIARESIRAVGKIALQQYD-VNAIV----DRLLQFLEME---------- 421 (840)
Q Consensus 369 ----------~Nv~~Iv~EL~~y~~~~d--~~~~~~~i~aI~~la~k~~~-~~~~v----~~Ll~LL~~~---------- 421 (840)
.-+..|+..|...+.+.| ..++..++.+++.++...++ ...++ ..+++.+...
T Consensus 484 ~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~ 563 (861)
T 2bpt_A 484 LAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTL 563 (861)
T ss_dssp HSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCH
T ss_pred cccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCCh
Confidence 346788888888887544 67899999999999987763 22333 3344444421
Q ss_pred -----CchhhHHHHHHHHHHHhhCCC-cchhHHHHHH---hhhcccCCch-HHHHHHHHHHcCcC----CCC-CChHHHH
Q 003201 422 -----KDYVTAEALVLVKDLLRKYPQ-WSHDCIAVVG---SISSQNVQEP-KAKAALIWMLGEYS----QDM-QDAPYIL 486 (840)
Q Consensus 422 -----~~~v~~e~v~~i~~il~~~p~-~~~~~~~~l~---~l~~~~i~~~-~ak~a~iwilGEy~----~~i-~~~~~il 486 (840)
...+...++..+..+++..+. +..+.-.++. .++.. .++ ..+..+++.+|... ..+ +-.+.++
T Consensus 564 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~ 641 (861)
T 2bpt_A 564 EDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEK--KDSAFIEDDVFYAISALAASLGKGFEKYLETFS 641 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHS--TTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcc--CCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 112334556667777776654 2222222222 22211 112 44444444444332 222 1234566
Q ss_pred HHHHHhhccCCcHHHHHHHHHHHhHHhhcCChhHHHHHH----HHHHhhccC-CChHHHhHHHHHHH
Q 003201 487 ESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLG----AALAAGLAD-FHQDVHDRALFYHR 548 (840)
Q Consensus 487 ~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~~~~l~----~vL~~~~~d-~d~dVrdRA~~Y~r 548 (840)
..+.+.+.... +.+|...+.++..+.........+.+. .+++....+ .++++|..+...+.
T Consensus 642 ~~l~~~l~~~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~ 707 (861)
T 2bpt_A 642 PYLLKALNQVD-SPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFG 707 (861)
T ss_dssp HHHHHHHHCTT-SHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHH
T ss_pred HHHHHHhcccc-HHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHH
Confidence 66666665555 778888888777766555444443333 334433333 46899998876553
No 13
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.38 E-value=8.7e-11 Score=136.57 Aligned_cols=346 Identities=13% Similarity=0.088 Sum_probs=246.0
Q ss_pred CCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCc-------cchhhhhhhhccCC-CcchHHHHHHHHHH
Q 003201 18 GKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDV-------SAVFGEMVMCSATS-DIVLKKMCYLYVGN 89 (840)
Q Consensus 18 ~k~Ei~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG~Dv-------S~lF~~Vi~l~~S~-d~~~KkL~YLyl~~ 89 (840)
.++.+..|-..|.+ ++.+.+..++..+-.+...+.+- +.+.+.++.++.++ +...+..+--++.+
T Consensus 85 ~~~~i~~lv~~L~s-------~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~ 157 (530)
T 1wa5_B 85 LQQELPQMTQQLNS-------DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTN 157 (530)
T ss_dssp --CCHHHHHHHHSC-------SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 44667777777754 34567778877666555543222 23567778888886 88889988889999
Q ss_pred hccCCCchHHH-----HHHHHHhhcCCCChhhHhHHHHHhhCCChh--hh-----HHHHHHHHHhccCCCChHHHHHHHH
Q 003201 90 YAKVNPDLALL-----TINFLQRDCKDEDPMIRGLALRSLCSLRVA--NL-----VEYLVGPLGLGLKDNNSYVRTVAVI 157 (840)
Q Consensus 90 ~~~~~~dl~lL-----~iNtl~KDl~~~Np~ir~LALr~l~~I~~~--~i-----~e~l~~~v~~~L~d~~pyVRK~Aal 157 (840)
++..+++..-. ++..|.+=+.++++.+|..|+.+|++|... +. ...+++.+.+++.++++.||+.|+.
T Consensus 158 l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~ 237 (530)
T 1wa5_B 158 IASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATW 237 (530)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHH
Confidence 98766554322 356677777789999999999999998542 22 2246788999999999999999999
Q ss_pred HHHHHHhhc-CCc--ccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhc
Q 003201 158 GVLKLYHIS-APT--CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK 234 (840)
Q Consensus 158 a~~kl~~~~-p~~--~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~ 234 (840)
++..+.... |.. ....+.++.|..+ +.+.|+.|..+|+.+|..+....+.. ....+...++..|+..+.
T Consensus 238 ~L~~L~~~~~~~~~~~~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~~-------~~~~~~~~~v~~Lv~lL~ 309 (530)
T 1wa5_B 238 TLSNLCRGKKPQPDWSVVSQALPTLAKL-IYSMDTETLVDACWAISYLSDGPQEA-------IQAVIDVRIPKRLVELLS 309 (530)
T ss_dssp HHHHHHCCSSSCCCHHHHGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHHSSCHHH-------HHHHHHTTCHHHHHHGGG
T ss_pred HHHHHhCCCCCCCcHHHHHhHHHHHHHH-HcCCCHHHHHHHHHHHHHHhCCCHHH-------HHHHHhcCcHHHHHHHHC
Confidence 999998754 321 1224678888887 68999999999999999998543210 111222235677888888
Q ss_pred cCChhHHHHHHHHHHhcCCCChhHHH-----HHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHH-HHHHHHHH
Q 003201 235 EFSEWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVY-ERIKAPLL 308 (840)
Q Consensus 235 ~~~~W~Qi~iL~lL~~y~p~~~~e~~-----~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l-~rl~~~L~ 308 (840)
+.++..+...+..|..+...++.... .+++.+..+|++.+..|..+|+.++..+....++..+.++ ..+.++|+
T Consensus 310 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~ 389 (530)
T 1wa5_B 310 HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 389 (530)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 88888999999999998876654333 3567788889999999999999999998754433222333 24667888
Q ss_pred HhhcCCCchhHHHHHHHHHHHHhhCCCcccccccEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcCCHH
Q 003201 309 TLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIP 388 (840)
Q Consensus 309 ~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~~ 388 (840)
.+|.++++++|..++..|..++..... .|.+++.. .. ..++..|...+.+.|.+
T Consensus 390 ~lL~~~~~~v~~~a~~aL~~l~~~~~~--------------~~~~~~~l--------~~----~~~l~~L~~ll~~~~~~ 443 (530)
T 1wa5_B 390 KLLEVAEYKTKKEACWAISNASSGGLQ--------------RPDIIRYL--------VS----QGCIKPLCDLLEIADNR 443 (530)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTTT--------------CTHHHHHH--------HH----TTCHHHHHHHTTTCCHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhcCCC--------------cHHHHHHH--------HH----CCCHHHHHHHHhCCCHH
Confidence 899888999999999999988865211 01222211 11 13566677777778888
Q ss_pred HHHHHHHHHHHHHhhc
Q 003201 389 IARESIRAVGKIALQQ 404 (840)
Q Consensus 389 ~~~~~i~aI~~la~k~ 404 (840)
++..++.+++.+....
T Consensus 444 v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 444 IIEVTLDALENILKMG 459 (530)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8888888888877553
No 14
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.36 E-value=3.8e-10 Score=137.97 Aligned_cols=370 Identities=10% Similarity=0.084 Sum_probs=238.3
Q ss_pred hhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhc-CC-cccCCCchHHHHHHHhcCC-ChhHHHHHHHHHHHHHhhc
Q 003201 130 ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS-AP-TCIDADFPPTLKHLMLNDP-DPQVVANCLSALQEIWSLE 206 (840)
Q Consensus 130 ~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~-p~-~~~~~~~~~~L~~lLL~D~-d~~Vv~~al~~L~eI~~~~ 206 (840)
++..+.+-..+.++|.++++.||++++.++..+.+.+ |. .. +++++.|..+ +.+. |+.+.-.|+.++..|.+.-
T Consensus 90 ~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w--~~ll~~L~~~-l~~~~~~~~r~~al~~l~~l~~~~ 166 (861)
T 2bpt_A 90 PEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAW--PELMKIMVDN-TGAEQPENVKRASLLALGYMCESA 166 (861)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCC--HHHHHHHHHH-TSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCccccc--HHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHcC
Confidence 3455666677778889999999999999999998874 53 22 4456667776 5777 9999888888888776421
Q ss_pred cCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhccC--ChHHHHHHHHH
Q 003201 207 ASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHA--NGAVVLSTIKV 284 (840)
Q Consensus 207 ~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~--n~aVvleaik~ 284 (840)
+. ++ +. -......+++.+...+.+. +..|...|+++
T Consensus 167 ~~-----------------------------~~------~~-------~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~ 204 (861)
T 2bpt_A 167 DP-----------------------------QS------QA-------LVSSSNNILIAIVQGAQSTETSKAVRLAALNA 204 (861)
T ss_dssp ST-----------------------------TS------ST-------TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred Ch-----------------------------hh------hH-------HHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence 10 00 00 0123445666666667665 67788888887
Q ss_pred HHhccCCCc-hhH-HHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCccccccc-EEE-----EccCCCHHHHH
Q 003201 285 FLHLTLSMT-DVH-QQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYK-HFY-----CQYNEPSYVKK 356 (840)
Q Consensus 285 il~l~~~~~-~~~-~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~-~f~-----c~~~dp~~IK~ 356 (840)
+..+..... ... ......+.+.|..++.+.++++|-.+++.+..++..+|..+.+|+. .++ +..+.+..+|.
T Consensus 205 l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~ 284 (861)
T 2bpt_A 205 LADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVAS 284 (861)
T ss_dssp HHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 765422111 000 0011224455666778889999999999999999999988877765 332 34567789999
Q ss_pred HHHHHHHhccCCC-----------------------CHHHHHHHHHHhhhcC-------CHHHHHHHHHHHHHHHhhcCC
Q 003201 357 LKLEMLTAVANES-----------------------NTYEIVTELCEYAANV-------DIPIARESIRAVGKIALQQYD 406 (840)
Q Consensus 357 ~kLdiL~~L~n~~-----------------------Nv~~Iv~EL~~y~~~~-------d~~~~~~~i~aI~~la~k~~~ 406 (840)
.+++.+..++... .+..|+..|...+++. +..+++.+...++.++..+++
T Consensus 285 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~ 364 (861)
T 2bpt_A 285 MTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN 364 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH
Confidence 9999998887542 1255777777777643 246888999999999988863
Q ss_pred h--HHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCC-Ccc-h---hHHHHHHhhhcccCCchHHHHHHHHHHcCcCCCC
Q 003201 407 V--NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYP-QWS-H---DCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDM 479 (840)
Q Consensus 407 ~--~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p-~~~-~---~~~~~l~~l~~~~i~~~~ak~a~iwilGEy~~~i 479 (840)
. ...+..+.+.+......+...++..+..|..... +.. . .++..+...+.+ .++.++.+++|.+|.++..+
T Consensus 365 ~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~ 442 (861)
T 2bpt_A 365 HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMND--QSLQVKETTAWCIGRIADSV 442 (861)
T ss_dssp GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGC--SCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHHHHh
Confidence 2 3456666666665544566666777777764332 111 1 112222222222 36788999999999988643
Q ss_pred -------CChHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcC----Ch----hHHHHHHHHHHhhcc-CCChHHHhHH
Q 003201 480 -------QDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKR----PP----ETQKVLGAALAAGLA-DFHQDVHDRA 543 (840)
Q Consensus 480 -------~~~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~----p~----e~~~~l~~vL~~~~~-d~d~dVrdRA 543 (840)
...+.++..+++.+.+ + +.||.....++..+.-.. +. -...++..+++.... +.+++||..|
T Consensus 443 ~~~~~~~~~~~~~l~~l~~~l~~-~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a 520 (861)
T 2bpt_A 443 AESIDPQQHLPGVVQACLIGLQD-H-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASA 520 (861)
T ss_dssp GGGSCTTTTHHHHHHHHHHHHTS-C-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhcc-C-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHH
Confidence 2356777777777644 4 788888777776665332 12 234455555555442 4568888777
Q ss_pred HHHHH
Q 003201 544 LFYHR 548 (840)
Q Consensus 544 ~~Y~r 548 (840)
..-..
T Consensus 521 ~~al~ 525 (861)
T 2bpt_A 521 FSALT 525 (861)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
No 15
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.35 E-value=2.7e-09 Score=130.67 Aligned_cols=380 Identities=10% Similarity=0.059 Sum_probs=234.8
Q ss_pred cHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCC--CcchHHHHHHHHHHhccCC-Cc-
Q 003201 21 EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATS--DIVLKKMCYLYVGNYAKVN-PD- 96 (840)
Q Consensus 21 Ei~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG~DvS~lF~~Vi~l~~S~--d~~~KkL~YLyl~~~~~~~-~d- 96 (840)
+...||..|-+...+.++.. ..-..++..+............+++.++.++.++ +...|+.+...+..+.+.- ++
T Consensus 87 ~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~ 165 (876)
T 1qgr_A 87 ARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ 165 (876)
T ss_dssp HHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhh
Confidence 44556666666554444333 3334444444433322234566788888888888 8777877776666665432 22
Q ss_pred ---hHHHHHHHHHhhcCCC--ChhhHhHHHHHhhCCCh---hhh-----HHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Q 003201 97 ---LALLTINFLQRDCKDE--DPMIRGLALRSLCSLRV---ANL-----VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLY 163 (840)
Q Consensus 97 ---l~lL~iNtl~KDl~~~--Np~ir~LALr~l~~I~~---~~i-----~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~ 163 (840)
..-.++..+.+-+.++ |+.+|..|+++++.+.. ..+ .+.+.+.+...+.|.++.||+.|+-|+.++.
T Consensus 166 ~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~ 245 (876)
T 1qgr_A 166 LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (876)
T ss_dssp HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 2234455666666776 79999999999987531 111 2357777888889999999999999999999
Q ss_pred hhcCCccc---CCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchH-------------HHHHHHhhccHHHHH
Q 003201 164 HISAPTCI---DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEE-------------ASREREALISKPVIY 227 (840)
Q Consensus 164 ~~~p~~~~---~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~-------------~~~~~~~li~~~~~~ 227 (840)
..+|+.+. ...+++.+... ..|.++.|...|+..+..+.+.......+ .+........+.++.
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 324 (876)
T 1qgr_A 246 SLYYQYMETYMGPALFAITIEA-MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324 (876)
T ss_dssp HHSGGGCHHHHTTTHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhH
Confidence 98887652 12566666665 47889999999998888776532100000 000000000022344
Q ss_pred HHHHhhcc------CChhHH----HHHHHHHHhcCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCc-hhH
Q 003201 228 YLLNRIKE------FSEWAQ----CLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT-DVH 296 (840)
Q Consensus 228 ~Ll~~l~~------~~~W~Q----i~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~-~~~ 296 (840)
.+++.+.. -+.|.. ...|..+....+ ......+++.+...+++.+..+..+|+.++-.+..... +..
T Consensus 325 ~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~ 402 (876)
T 1qgr_A 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL 402 (876)
T ss_dssp HHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHH
T ss_pred HHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHH
Confidence 45555432 235732 344555554444 23355677888888888888899999999888765433 322
Q ss_pred HHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCcc--ccccc----EEEEccCCCHHHHHHHHHHHHhccCC--
Q 003201 297 QQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIF--ASDYK----HFYCQYNEPSYVKKLKLEMLTAVANE-- 368 (840)
Q Consensus 297 ~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~--~~~~~----~f~c~~~dp~~IK~~kLdiL~~L~n~-- 368 (840)
...+..+.+.|...++++++.+|..++..+..++...+..+ .+++. .++-.-+++..+|..++..|..++..
T Consensus 403 ~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~ 482 (876)
T 1qgr_A 403 KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAY 482 (876)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Confidence 23456677888889988889999999999999988755321 22322 11211233467788777777766532
Q ss_pred ------------------CCHHHHHHHHHHhhhcCC---HHHHHHHHHHHHHHHhhc
Q 003201 369 ------------------SNTYEIVTELCEYAANVD---IPIARESIRAVGKIALQQ 404 (840)
Q Consensus 369 ------------------~Nv~~Iv~EL~~y~~~~d---~~~~~~~i~aI~~la~k~ 404 (840)
.-+..|+..|...+.+.+ ..++..++.+++.++...
T Consensus 483 ~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~ 539 (876)
T 1qgr_A 483 EAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNS 539 (876)
T ss_dssp HTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTC
T ss_pred hccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHC
Confidence 245677777777776542 355556666666666544
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.35 E-value=1.3e-11 Score=139.28 Aligned_cols=330 Identities=13% Similarity=0.070 Sum_probs=209.6
Q ss_pred HHHHHHHhhcCCCChhhHhHHHHHhhCC----Chh---hhHH--HHHHHHHhccCCC-ChHHHHHHHHHHHHHHhhcCCc
Q 003201 100 LTINFLQRDCKDEDPMIRGLALRSLCSL----RVA---NLVE--YLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHISAPT 169 (840)
Q Consensus 100 L~iNtl~KDl~~~Np~ir~LALr~l~~I----~~~---~i~e--~l~~~v~~~L~d~-~pyVRK~Aala~~kl~~~~p~~ 169 (840)
+++..+.+.++++|+.+|-.|++.+..+ ..+ .+++ .+++.+.++|.+. ++.||..|+-++.++...+++.
T Consensus 20 ~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 20 VITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp --CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 4567777778888999998888888775 222 2333 5788888889888 8999999999999998755442
Q ss_pred ---ccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhcc-CChhHHHHHH
Q 003201 170 ---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKE-FSEWAQCLVL 245 (840)
Q Consensus 170 ---~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~-~~~W~Qi~iL 245 (840)
+.+.+.++.|..+ +.++|+.|...|+.+|..+....+. +.+ ..+....+..|++.+.+ .++-.+...+
T Consensus 100 ~~~~~~~~~i~~L~~l-L~~~~~~vr~~a~~~L~~l~~~~~~-----~~~--~~~~~~~i~~L~~~l~~~~~~~v~~~a~ 171 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIEL-LSSEFEDVQEQAVWALGNIAGDSTM-----CRD--YVLDCNILPPLLQLFSKQNRLTMTRNAV 171 (450)
T ss_dssp HHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHHTTCHH-----HHH--HHHHTTCHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHH-HcCCCHHHHHHHHHHHHHHccCCHH-----HHH--HHHHCCCHHHHHHHhcCCCCHHHHHHHH
Confidence 2236788999997 7999999999999999999864331 111 11222345667777774 5677788888
Q ss_pred HHHHhcCCCC-h----hHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHH-HHHHHHHHHhhcCCCchhH
Q 003201 246 ELVAKYVPLD-S----NEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVY-ERIKAPLLTLVSSGSPEQS 319 (840)
Q Consensus 246 ~lL~~y~p~~-~----~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l-~rl~~~L~~lLss~~~nir 319 (840)
..|..+.... + .....+++.+...+++.+..|...++.++.++....++....+. ..+.++|+.+|.+++++++
T Consensus 172 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~ 251 (450)
T 2jdq_A 172 WALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVV 251 (450)
T ss_dssp HHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHH
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHH
Confidence 8888765332 1 22345778888889988999999999999888764433222222 2466788899988899999
Q ss_pred HHHHHHHHHHHhhCCCc----cccc-ccEE-EEccCCCHHHHHHHHHHHHhccC--CCCHH-----HHHHHHHHhhhcCC
Q 003201 320 YAVLSHLHILVMRAPFI----FASD-YKHF-YCQYNEPSYVKKLKLEMLTAVAN--ESNTY-----EIVTELCEYAANVD 386 (840)
Q Consensus 320 Y~aL~~l~~l~~~~p~~----~~~~-~~~f-~c~~~dp~~IK~~kLdiL~~L~n--~~Nv~-----~Iv~EL~~y~~~~d 386 (840)
..++..|..|+...+.. +... +..+ -+..+.+..+|..++..|..++. +.+.. .++..|...+.+.+
T Consensus 252 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~ 331 (450)
T 2jdq_A 252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE 331 (450)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC
Confidence 99999999887543321 1111 0111 12233445666666666666653 22222 23445555555666
Q ss_pred HHHHHHHHHHHHHHHhhc-CC-h-----HHHHHHHHHHhhhcCchhhHHHHHHHHHHH
Q 003201 387 IPIARESIRAVGKIALQQ-YD-V-----NAIVDRLLQFLEMEKDYVTAEALVLVKDLL 437 (840)
Q Consensus 387 ~~~~~~~i~aI~~la~k~-~~-~-----~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il 437 (840)
.++++.++.+|+.++... ++ . ..++..|++++......+...++..+..++
T Consensus 332 ~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 389 (450)
T 2jdq_A 332 FRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENIL 389 (450)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 666666666666666542 11 1 113444555555443344444444444444
No 17
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.35 E-value=5.4e-10 Score=125.98 Aligned_cols=340 Identities=14% Similarity=0.078 Sum_probs=241.1
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCc-------c-chhhhhhhhccCC-CcchHHHHHHHHHHhcc
Q 003201 22 VSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDV-------S-AVFGEMVMCSATS-DIVLKKMCYLYVGNYAK 92 (840)
Q Consensus 22 i~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG~Dv-------S-~lF~~Vi~l~~S~-d~~~KkL~YLyl~~~~~ 92 (840)
+..|-+.|++ ++...|..++..+-.+...+.+. . .+.+.+++++.+. +...+.-+--.+.+++.
T Consensus 22 l~~l~~~l~s-------~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~ 94 (450)
T 2jdq_A 22 TSDMIEMIFS-------KSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIAS 94 (450)
T ss_dssp CHHHHHHHHS-------SCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-------CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhc
Confidence 6677777764 44566777776665555433321 1 4566677888887 78888888888888877
Q ss_pred CCCchHH-----HHHHHHHhhcCCCChhhHhHHHHHhhCCChh--hhHH-----HHHHHHHhccCC-CChHHHHHHHHHH
Q 003201 93 VNPDLAL-----LTINFLQRDCKDEDPMIRGLALRSLCSLRVA--NLVE-----YLVGPLGLGLKD-NNSYVRTVAVIGV 159 (840)
Q Consensus 93 ~~~dl~l-----L~iNtl~KDl~~~Np~ir~LALr~l~~I~~~--~i~e-----~l~~~v~~~L~d-~~pyVRK~Aala~ 159 (840)
.+++..- -++..|.+=+.++|+.+|..|+.+|++|... +..+ .+++.+.+++.+ +++.||+.|+.++
T Consensus 95 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L 174 (450)
T 2jdq_A 95 GNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWAL 174 (450)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 6554321 2577888888999999999999999988642 2222 357788888885 7999999999999
Q ss_pred HHHHhhc-CCc--ccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccC
Q 003201 160 LKLYHIS-APT--CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEF 236 (840)
Q Consensus 160 ~kl~~~~-p~~--~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~ 236 (840)
..+.... |.. ....+.++.|..+ +.+.|+.|..+|+.+|..++...+.. ....+....+..|+..+.+.
T Consensus 175 ~~l~~~~~~~~~~~~~~~~l~~L~~~-l~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~~~~~~~i~~L~~ll~~~ 246 (450)
T 2jdq_A 175 SNLCRGKSPPPEFAKVSPCLNVLSWL-LFVSDTDVLADACWALSYLSDGPNDK-------IQAVIDAGVCRRLVELLMHN 246 (450)
T ss_dssp HHHHCCSSSCCCGGGTGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSSHHH-------HHHHHHTTTHHHHHHHTTCS
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHCCCcHH-------HHHHHHcCcHHHHHHHHCCC
Confidence 9999754 432 1125678888887 68999999999999999997643210 11112223566777777777
Q ss_pred ChhHHHHHHHHHHhcCCCChhHHH-----HHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHH-HHHHHHHHHh
Q 003201 237 SEWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVY-ERIKAPLLTL 310 (840)
Q Consensus 237 ~~W~Qi~iL~lL~~y~p~~~~e~~-----~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l-~rl~~~L~~l 310 (840)
++-.+...+..|..+...++.... .+++.+..+|++.++.|..+|+.++..+....++..+.++ ..+.+.|+.+
T Consensus 247 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~ 326 (450)
T 2jdq_A 247 DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISI 326 (450)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 877888999999988766554332 3677888889998999999999999988754433333333 2566788888
Q ss_pred hcCCCchhHHHHHHHHHHHHhhCCCcccccccEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcCCHHHH
Q 003201 311 VSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIA 390 (840)
Q Consensus 311 Lss~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~ 390 (840)
|.++++++|..+...|..++... ++..++. + .+ ..++..|.+.+.+.|.+++
T Consensus 327 l~~~~~~v~~~a~~~L~~l~~~~----------------~~~~~~~-----l---~~----~~~i~~L~~ll~~~~~~v~ 378 (450)
T 2jdq_A 327 LQTAEFRTRKEAAWAITNATSGG----------------SAEQIKY-----L---VE----LGCIKPLCDLLTVMDSKIV 378 (450)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHC----------------CHHHHHH-----H---HH----HTCHHHHHHGGGSSCHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCC----------------CHHHHHH-----H---HH----CCCHHHHHHHhcCCCHHHH
Confidence 88888999999998888887541 1112221 1 10 2356677778888888999
Q ss_pred HHHHHHHHHHHhhc
Q 003201 391 RESIRAVGKIALQQ 404 (840)
Q Consensus 391 ~~~i~aI~~la~k~ 404 (840)
..++.+++.++...
T Consensus 379 ~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 379 QVALNGLENILRLG 392 (450)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998888653
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.34 E-value=7.5e-11 Score=137.09 Aligned_cols=343 Identities=11% Similarity=0.080 Sum_probs=242.2
Q ss_pred ccchhhhhhhhccCCCcchHHHHHHHHHHhccC--CCchHH----HHHHHHHhhcCCC-ChhhHhHHHHHhhCCCh--hh
Q 003201 61 VSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKV--NPDLAL----LTINFLQRDCKDE-DPMIRGLALRSLCSLRV--AN 131 (840)
Q Consensus 61 vS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~--~~dl~l----L~iNtl~KDl~~~-Np~ir~LALr~l~~I~~--~~ 131 (840)
.....+.++..+.+++...++.+-..+..++.. ++..-. -++..|.+=+.++ |+.+|..|+++|++|.. ++
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 334467778888999988888888888877643 343211 2467788888887 99999999999998865 33
Q ss_pred hHH-----HHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCC---cccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 003201 132 LVE-----YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (840)
Q Consensus 132 i~e-----~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~---~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~ 203 (840)
... ..++.+.++|.++++.||..|+-++.++....|+ .+...+.++.|..+ +.+.|+.|..+|+.+|..++
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~L~ 243 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL-FNSNKPSLIRTATWTLSNLC 243 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHG-GGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHH-hccCCHHHHHHHHHHHHHHh
Confidence 333 3467888888899999999999999999875443 22345788889897 68899999999999999998
Q ss_pred hhc-cCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHH-----HHHHHHHHHhccCChHH
Q 003201 204 SLE-ASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAV 277 (840)
Q Consensus 204 ~~~-~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~-----~il~~l~~~L~~~n~aV 277 (840)
... +.... .....++..|+..+.+.++..+...+..|..+....++... .+++.+..+|++.+..|
T Consensus 244 ~~~~~~~~~--------~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v 315 (530)
T 1wa5_B 244 RGKKPQPDW--------SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLV 315 (530)
T ss_dssp CCSSSCCCH--------HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred CCCCCCCcH--------HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhh
Confidence 654 32211 11123566777778888899999999999888765544333 34567888889989999
Q ss_pred HHHHHHHHHhccCCCchhHHHHHH-HHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCcccccccEEEEccCCCHHHHH
Q 003201 278 VLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKK 356 (840)
Q Consensus 278 vleaik~il~l~~~~~~~~~~~l~-rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~c~~~dp~~IK~ 356 (840)
...|++++..+....+...+.+++ .+.+.|+.+|.++++.+|..++..|..|+...+ ..++.
T Consensus 316 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~-----------------~~~~~ 378 (530)
T 1wa5_B 316 QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT-----------------EQIQA 378 (530)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-----------------HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-----------------HHHHH
Confidence 999999999887554433232332 456678888887788888888888877664221 11111
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCC---h------HHHHHHHHHHhhhcCchhhH
Q 003201 357 LKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD---V------NAIVDRLLQFLEMEKDYVTA 427 (840)
Q Consensus 357 ~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~---~------~~~v~~Ll~LL~~~~~~v~~ 427 (840)
++ + ..++..|...+.+.+.+++..++.+|+.++..... . ..++..|++++......+..
T Consensus 379 ----~~----~----~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~ 446 (530)
T 1wa5_B 379 ----VI----D----ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 446 (530)
T ss_dssp ----HH----H----TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHH
T ss_pred ----HH----H----CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHH
Confidence 01 1 13456666777788999999999999999876422 1 12567777887776666666
Q ss_pred HHHHHHHHHHhhCC
Q 003201 428 EALVLVKDLLRKYP 441 (840)
Q Consensus 428 e~v~~i~~il~~~p 441 (840)
.++..+..++...+
T Consensus 447 ~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 447 VTLDALENILKMGE 460 (530)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 66777777765443
No 19
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.32 E-value=8e-12 Score=148.57 Aligned_cols=408 Identities=11% Similarity=0.042 Sum_probs=247.8
Q ss_pred HHHHHhhcCCCChhhHhHHHHHhhCCC--hhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHH
Q 003201 102 INFLQRDCKDEDPMIRGLALRSLCSLR--VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (840)
Q Consensus 102 iNtl~KDl~~~Np~ir~LALr~l~~I~--~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L 179 (840)
++-+++.++++++..|.-|++-+--+. ..++ ......+.+++.+++..+||-+.+++..+.+.+|+.. .-.++.+
T Consensus 36 ~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~-~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~--~l~in~l 112 (618)
T 1w63_A 36 CAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPA-HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVH--LLMTNCI 112 (618)
T ss_dssp HHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCC-GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHH--HHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCC-cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHH--HHHHHHH
Confidence 445555666666555655554443321 1111 2344455566667777777777777777776666643 1234555
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHH
Q 003201 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI 259 (840)
Q Consensus 180 ~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~ 259 (840)
.+- +.|+|+.|.+.|+.+|..|... . +.+.++..+.+.+.+.+|...-..+..+.+....+++..
T Consensus 113 ~kD-L~~~n~~vr~lAL~~L~~i~~~--~------------~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v 177 (618)
T 1w63_A 113 KND-LNHSTQFVQGLALCTLGCMGSS--E------------MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM 177 (618)
T ss_dssp HHH-HSCSSSHHHHHHHHHHHHHCCH--H------------HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHh-cCCCCHhHHHHHHHHHHhcCCH--H------------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH
Confidence 554 4677777777777777776421 0 012234444555566677776666666655544444544
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhc---------------CCCchhHHHHHH
Q 003201 260 FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVS---------------SGSPEQSYAVLS 324 (840)
Q Consensus 260 ~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLs---------------s~~~nirY~aL~ 324 (840)
..+++.+..+|...|++|+..|+.++..+....++.. ..+.++.+.|..+|. ..++-.+-.+++
T Consensus 178 ~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~-~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~ 256 (618)
T 1w63_A 178 EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDML-AHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILR 256 (618)
T ss_dssp GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHH-HHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHH-HHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHH
Confidence 5566777778888889999999999888865444321 123334444444332 235677777777
Q ss_pred HHHHHHhhCCCcccccccEE-------EEccCCCHHHHHHHHHHHHhccCCCCH-HHHHHHHHHhhhcCCHHHHHHHHHH
Q 003201 325 HLHILVMRAPFIFASDYKHF-------YCQYNEPSYVKKLKLEMLTAVANESNT-YEIVTELCEYAANVDIPIARESIRA 396 (840)
Q Consensus 325 ~l~~l~~~~p~~~~~~~~~f-------~c~~~dp~~IK~~kLdiL~~L~n~~Nv-~~Iv~EL~~y~~~~d~~~~~~~i~a 396 (840)
.+..+....|..-..-+..+ .+..+....|...+...+..+.+.... ...++-|..++.+.|.+++.-++.+
T Consensus 257 ~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~ 336 (618)
T 1w63_A 257 LLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTS 336 (618)
T ss_dssp HHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 77777655543211100100 112233457888888888887664332 2356677788888888899999999
Q ss_pred HHHHHhhcCCh-HHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchhHHHHHHhhhcccCCchHHHHHHHHHHcCc
Q 003201 397 VGKIALQQYDV-NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEY 475 (840)
Q Consensus 397 I~~la~k~~~~-~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~~~~l~~l~~~~i~~~~ak~a~iwilGEy 475 (840)
|+.++.+.|+. ..+...++..+.....+|...++..+..+... .+.. .++..+..++.+ .+++.|..++..||.-
T Consensus 337 L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~-~nv~-~iv~eL~~~l~~--~d~e~r~~~v~~I~~l 412 (618)
T 1w63_A 337 LLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNG-NNIR-GMMKELLYFLDS--CEPEFKADCASGIFLA 412 (618)
T ss_dssp HHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS-SSTH-HHHHHHHHHHHH--CCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccc-ccHH-HHHHHHHHHHHh--CCHHHHHHHHHHHHHH
Confidence 99999887753 45777888888877778888888887777642 2222 222222222222 4567888888888888
Q ss_pred CCCC-CChHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCChhHHHHHHHHHHhhcc
Q 003201 476 SQDM-QDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLA 533 (840)
Q Consensus 476 ~~~i-~~~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~~~~l~~vL~~~~~ 533 (840)
+... ++...++..+++-+.... ..++..++..+..+.-+.|+.-+..+..+++....
T Consensus 413 a~k~~~~~~~~v~~ll~lL~~~~-~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~ 470 (618)
T 1w63_A 413 AEKYAPSKRWHIDTIMRVLTTAG-SYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILG 470 (618)
T ss_dssp HHSSCCCHHHHHHHHHHHHHHTG-GGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHH
T ss_pred HHHhCccHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhc
Confidence 7765 456666776665555554 55677777888888877875433456666665444
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.32 E-value=1.5e-10 Score=134.34 Aligned_cols=340 Identities=13% Similarity=0.076 Sum_probs=242.7
Q ss_pred hhhhhhhccCCCcchHHHHHHHHHHhccCCC--chHHH----HHHHHHhhcCCCC-hhhHhHHHHHhhCCCh--hhhHH-
Q 003201 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNP--DLALL----TINFLQRDCKDED-PMIRGLALRSLCSLRV--ANLVE- 134 (840)
Q Consensus 65 F~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~--dl~lL----~iNtl~KDl~~~N-p~ir~LALr~l~~I~~--~~i~e- 134 (840)
.+.+++.+.++|...+..+--++..++...+ ....+ ++..|.+=+.+++ +.+|-.|+.+|++|.. ++...
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 6778888899998888888777777754332 22211 3666777777876 9999999999988765 33222
Q ss_pred ----HHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCC---cccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Q 003201 135 ----YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (840)
Q Consensus 135 ----~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~---~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~ 207 (840)
..++.+.++|.++++.||..|+.++.++....|+ .+.+.+.++.|..+|..+.++.|..+|+.+|..++...+
T Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~ 235 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP 235 (528)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 3678899999999999999999999999865553 233456788888873378899999999999999987544
Q ss_pred CcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHH-----HHHHHHHHhccCChHHHHHHH
Q 003201 208 STSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD-----IMNLLEDRLQHANGAVVLSTI 282 (840)
Q Consensus 208 ~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~-----il~~l~~~L~~~n~aVvleai 282 (840)
..... .....+..|+..+...++..+...+..|..+...++..... +++.+..+|++.+..|...|+
T Consensus 236 ~~~~~--------~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~ 307 (528)
T 4b8j_A 236 QPSFE--------QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPAL 307 (528)
T ss_dssp CCCHH--------HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHH
T ss_pred CCcHH--------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHH
Confidence 32111 11235677788888889999999999999988665543333 456788899999999999999
Q ss_pred HHHHhccCCCchhHHHHH-HHHHHHHHHhhcCC-CchhHHHHHHHHHHHHhhCCCcccccccEEEEccCCCHHHHHHHHH
Q 003201 283 KVFLHLTLSMTDVHQQVY-ERIKAPLLTLVSSG-SPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLE 360 (840)
Q Consensus 283 k~il~l~~~~~~~~~~~l-~rl~~~L~~lLss~-~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~c~~~dp~~IK~~kLd 360 (840)
+++..+....+...+.++ ..+.+.|+.+|.++ ++.++.-+...|..|+...+ ..++.
T Consensus 308 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~-----------------~~~~~---- 366 (528)
T 4b8j_A 308 RTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK-----------------DQIQA---- 366 (528)
T ss_dssp HHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCH-----------------HHHHH----
T ss_pred HHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCH-----------------HHHHH----
Confidence 999988764433322222 23566778888777 78888888888777764211 11110
Q ss_pred HHHhccCCCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhc-CCh------HHHHHHHHHHhhhcCchhhHHHHHHH
Q 003201 361 MLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQ-YDV------NAIVDRLLQFLEMEKDYVTAEALVLV 433 (840)
Q Consensus 361 iL~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~-~~~------~~~v~~Ll~LL~~~~~~v~~e~v~~i 433 (840)
+ .+. .++..|...+.+.|.++++.++.+|+.++..- ++. ..++..|+++|......+...++..+
T Consensus 367 -~---~~~----~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L 438 (528)
T 4b8j_A 367 -V---INA----GIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGL 438 (528)
T ss_dssp -H---HHT----TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred -H---HHC----CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 0 111 34566667777789999999999999998762 221 13567888888887777777777888
Q ss_pred HHHHhhCC
Q 003201 434 KDLLRKYP 441 (840)
Q Consensus 434 ~~il~~~p 441 (840)
.+|++..+
T Consensus 439 ~~l~~~~~ 446 (528)
T 4b8j_A 439 ENILKVGE 446 (528)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876543
No 21
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.31 E-value=5.9e-10 Score=135.99 Aligned_cols=446 Identities=12% Similarity=0.066 Sum_probs=279.0
Q ss_pred HHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCc--cc-CCCchH
Q 003201 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT--CI-DADFPP 177 (840)
Q Consensus 101 ~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~--~~-~~~~~~ 177 (840)
.+.++.++|.++++.+|..|++.++.+....+....++.+.++|.++++.||..|+.++.++....+.. +. .++.++
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~ 195 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS 195 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHH
Confidence 367899999999999999999999877667788888999999999999999999999999988643211 11 235677
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChh
Q 003201 178 TLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSN 257 (840)
Q Consensus 178 ~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~ 257 (840)
.|..+|-++.|+.+..+|+.+|..+..... . +........+..|+..+...++-.|...+..|..++..+++
T Consensus 196 ~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~------~--~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~ 267 (780)
T 2z6g_A 196 AIVRTMQNTNDVETARCTSGTLHNLSHHRE------G--LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG 267 (780)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHTSHH------H--HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCCch------h--HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChh
Confidence 777774345699999999999999865321 0 11111223567788888888888898888888887643322
Q ss_pred HH-----HHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHH-HHHHHHHHhhcCCCch-hHHHHHHHHHHHH
Q 003201 258 EI-----FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPE-QSYAVLSHLHILV 330 (840)
Q Consensus 258 e~-----~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~-rl~~~L~~lLss~~~n-irY~aL~~l~~l~ 330 (840)
.. ...+..+..+|++.+..|.-.++.++..+....++.+..+.+ .....|+.+|.+.+++ .+..+...+..|.
T Consensus 268 ~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls 347 (780)
T 2z6g_A 268 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 347 (780)
T ss_dssp HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 21 235677888888887777666666655554333333222221 3456788888765544 4556666666655
Q ss_pred hhCCC----ccccc-ccEE-EEccCCCHHHHHHHHHHHHhccCCC----CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Q 003201 331 MRAPF----IFASD-YKHF-YCQYNEPSYVKKLKLEMLTAVANES----NTYEIVTELCEYAANVDIPIARESIRAVGKI 400 (840)
Q Consensus 331 ~~~p~----~~~~~-~~~f-~c~~~dp~~IK~~kLdiL~~L~n~~----Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~l 400 (840)
. .+. ++... +..+ -+..+.+..+++.++..|..|+... ....++..|...+.+.|.++++.++.+++.+
T Consensus 348 ~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L 426 (780)
T 2z6g_A 348 V-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 426 (780)
T ss_dssp T-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred c-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3 222 11111 1111 1224456778999999999987543 4677899999999999999999999999999
Q ss_pred HhhcCCh------HHHHHHHHHHhhhcCc--hhhHHHHHHHHHHHhhCCCcc---h-----hHHHHHHhhhcccCCchHH
Q 003201 401 ALQQYDV------NAIVDRLLQFLEMEKD--YVTAEALVLVKDLLRKYPQWS---H-----DCIAVVGSISSQNVQEPKA 464 (840)
Q Consensus 401 a~k~~~~------~~~v~~Ll~LL~~~~~--~v~~e~v~~i~~il~~~p~~~---~-----~~~~~l~~l~~~~i~~~~a 464 (840)
+...++. ...+..|+++|...++ .+...++..+.+|....++.. . .++..|.+++. .-..+..
T Consensus 427 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~-~~~~~~v 505 (780)
T 2z6g_A 427 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLH-PPSHWPL 505 (780)
T ss_dssp TSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTS-TTCCHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhc-CCChHHH
Confidence 8754321 2367889999887443 677788888888876555521 1 12233444432 2234578
Q ss_pred HHHHHHHHcCcCCCCCC---------hHHHHHHHHHh----------------hcc-CCcHHHHHHHHHHHhHHhhcCCh
Q 003201 465 KAALIWMLGEYSQDMQD---------APYILESLTEN----------------WEE-EPSAEVRLHLLTAVMKCFFKRPP 518 (840)
Q Consensus 465 k~a~iwilGEy~~~i~~---------~~~il~~l~~~----------------~~~-e~~~~vk~~lLta~~Kl~~~~p~ 518 (840)
+..++|.||..+..-.+ .+.+++.+-+. +.. ..+.+++...+.++.+|.. .+
T Consensus 506 ~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~-~~- 583 (780)
T 2z6g_A 506 IKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR-DI- 583 (780)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT-SH-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc-Ch-
Confidence 88889999987642211 12223322221 111 1225677778888887752 22
Q ss_pred hHHHHHH-----HHHHhhccCCChHHHhHHHHHHHHccCCHHHHH
Q 003201 519 ETQKVLG-----AALAAGLADFHQDVHDRALFYHRLLQYNVSVAE 558 (840)
Q Consensus 519 e~~~~l~-----~vL~~~~~d~d~dVrdRA~~Y~rLL~~~~~~a~ 558 (840)
+.+..+. ..|-....+.+++||..|..-..-|..+++..+
T Consensus 584 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~ 628 (780)
T 2z6g_A 584 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAE 628 (780)
T ss_dssp HHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred hhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHH
Confidence 2222221 233334567899999998875544445554433
No 22
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.31 E-value=3.6e-10 Score=137.89 Aligned_cols=468 Identities=12% Similarity=0.062 Sum_probs=278.8
Q ss_pred hhhhhhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCChhh-----h--HHHHH
Q 003201 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVAN-----L--VEYLV 137 (840)
Q Consensus 65 F~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~-----i--~e~l~ 137 (840)
.+.+++.+++++...|+- -+.+..+. ...+++.=++..|.+=|.++|+.+|-.|+.+|++|...+ + .+.++
T Consensus 117 i~~lv~~L~~~~~~~r~~-a~~~l~~~-~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i 194 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHA-VVNLINYQ-DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 194 (780)
T ss_dssp ---------CCSCHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHH
T ss_pred HHHHHHHhcCccHHHHHH-HHHHHHhh-hHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChH
Confidence 456677777776555442 22222222 123455556778888888999999999999999875321 1 12456
Q ss_pred HHHHhccCC-CChHHHHHHHHHHHHHHhhcC--CcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHH
Q 003201 138 GPLGLGLKD-NNSYVRTVAVIGVLKLYHISA--PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEAS 214 (840)
Q Consensus 138 ~~v~~~L~d-~~pyVRK~Aala~~kl~~~~p--~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~ 214 (840)
+.+.+.|.+ .++.+|+.|+.++.++..... ..+.+.+.++.|.++ +.+.++.|...|+.+|..|+...+..
T Consensus 195 ~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~l-L~~~~~~v~~~A~~aL~nLa~~~~~~----- 268 (780)
T 2z6g_A 195 SAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNM-LGSPVDSVLFHAITTLHNLLLHQEGA----- 268 (780)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHHHHSTTH-----
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHH-HcCCCHHHHHHHHHHHHHHhCCChhh-----
Confidence 666666654 589999999999998754311 122345778899997 78999999999999999998653321
Q ss_pred HHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHH-----HHHHHHHHhccCChHHH-HHHHHHHHhc
Q 003201 215 REREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD-----IMNLLEDRLQHANGAVV-LSTIKVFLHL 288 (840)
Q Consensus 215 ~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~-----il~~l~~~L~~~n~aVv-leaik~il~l 288 (840)
. ........+..|+..+...++-.+...+..|..+.-.+++.... .++.+..+|++.++..+ ..++.++..+
T Consensus 269 ~--~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 346 (780)
T 2z6g_A 269 K--MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 346 (780)
T ss_dssp H--HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred H--HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 1 01111235667777777765544555556666554444333222 35566677777665444 4556666666
Q ss_pred cCCCchhHHHHHH-HHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCc--ccccccEE-EEccCCCHHHHHHHHHHHHh
Q 003201 289 TLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI--FASDYKHF-YCQYNEPSYVKKLKLEMLTA 364 (840)
Q Consensus 289 ~~~~~~~~~~~l~-rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~--~~~~~~~f-~c~~~dp~~IK~~kLdiL~~ 364 (840)
... +.....+++ .+.++|+.++.+.++.++.-++..+..|+...+.. +..-+..+ -...+++..+|..+..+|..
T Consensus 347 s~~-~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 347 SVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp HTS-TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hcC-hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 543 222222322 35677888998888889999999998888765432 11111111 12356678899999999999
Q ss_pred ccCCC--CHH-----HHHHHHHHhhhc-CC-HHHHHHHHHHHHHHHhhcCCh---------HHHHHHHHHHhhhcCc-hh
Q 003201 365 VANES--NTY-----EIVTELCEYAAN-VD-IPIARESIRAVGKIALQQYDV---------NAIVDRLLQFLEMEKD-YV 425 (840)
Q Consensus 365 L~n~~--Nv~-----~Iv~EL~~y~~~-~d-~~~~~~~i~aI~~la~k~~~~---------~~~v~~Ll~LL~~~~~-~v 425 (840)
|+... |.. ..+..|...+.+ .+ .+++..++.+|+.++...++. ...+..|+++|....+ .+
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v 505 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 505 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence 98753 332 245666777765 33 489999999999998765542 1246788899887765 78
Q ss_pred hHHHHHHHHHHHhhCCCcch-----hHHHHHHhhhcccCCchHHHHHHHHHHcC----------------------cCCC
Q 003201 426 TAEALVLVKDLLRKYPQWSH-----DCIAVVGSISSQNVQEPKAKAALIWMLGE----------------------YSQD 478 (840)
Q Consensus 426 ~~e~v~~i~~il~~~p~~~~-----~~~~~l~~l~~~~i~~~~ak~a~iwilGE----------------------y~~~ 478 (840)
..+++..+.+|... +..+. .++..|..++.+ .+++.+..++|.+|. .+..
T Consensus 506 ~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~ 582 (780)
T 2z6g_A 506 IKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVR--AHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD 582 (780)
T ss_dssp HHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHH--HHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHh--cchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC
Confidence 88888888888753 22221 122333333221 122333333444443 2211
Q ss_pred CCChH-----HHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCChhHHHHHHH-----HHHhhccCCChHHHhHHHHHHH
Q 003201 479 MQDAP-----YILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGA-----ALAAGLADFHQDVHDRALFYHR 548 (840)
Q Consensus 479 i~~~~-----~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~~~~l~~-----vL~~~~~d~d~dVrdRA~~Y~r 548 (840)
..+.. ..+..|++-....+ +.|+...+.++..+.. .+ +.+..+.. .|.....+.|++||..|..-..
T Consensus 583 ~~~~~~l~~~~~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~-~~-~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~ 659 (780)
T 2z6g_A 583 IHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQ-DK-EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 659 (780)
T ss_dssp HHHHHHHHHTCCHHHHHHGGGCSC-HHHHHHHHHHHHHHHT-SH-HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred hhhHHHHHHCCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhc-CH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 00000 11344555555566 8999999988888763 22 33333322 3334457889999999886544
Q ss_pred H
Q 003201 549 L 549 (840)
Q Consensus 549 L 549 (840)
-
T Consensus 660 ~ 660 (780)
T 2z6g_A 660 R 660 (780)
T ss_dssp H
T ss_pred H
Confidence 3
No 23
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.27 E-value=2.9e-09 Score=123.47 Aligned_cols=340 Identities=15% Similarity=0.101 Sum_probs=241.4
Q ss_pred cHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCC-Cc------cchhhhhhhhccCCC-cchHHHHHHHHHHhcc
Q 003201 21 EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGI-DV------SAVFGEMVMCSATSD-IVLKKMCYLYVGNYAK 92 (840)
Q Consensus 21 Ei~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG~-Dv------S~lF~~Vi~l~~S~d-~~~KkL~YLyl~~~~~ 92 (840)
++.+|-..|.+ ++.+.+..+++.+-.+...+. +. +.+.+.+++++.+++ ...+..+--++.+++.
T Consensus 75 ~l~~lv~~L~s-------~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~ 147 (528)
T 4b8j_A 75 SLPAMIGGVYS-------DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIAS 147 (528)
T ss_dssp CHHHHHHHHTS-------SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcC-------CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Confidence 35566666643 345677777765555444332 11 234666778888876 8888888888999887
Q ss_pred CCCchHHH-----HHHHHHhhcCCCChhhHhHHHHHhhCCCh--hhhHH-----HHHHHHHhcc-CCCChHHHHHHHHHH
Q 003201 93 VNPDLALL-----TINFLQRDCKDEDPMIRGLALRSLCSLRV--ANLVE-----YLVGPLGLGL-KDNNSYVRTVAVIGV 159 (840)
Q Consensus 93 ~~~dl~lL-----~iNtl~KDl~~~Np~ir~LALr~l~~I~~--~~i~e-----~l~~~v~~~L-~d~~pyVRK~Aala~ 159 (840)
.+++.... ++..|.+=+.++|+.+|..|+.+|++|.. +.... ..++++.++| .++++.||+.|+.++
T Consensus 148 ~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L 227 (528)
T 4b8j_A 148 GTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTL 227 (528)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 76664332 57788888999999999999999999853 22222 2467888888 788999999999999
Q ss_pred HHHHhhcCCcc--cCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCC
Q 003201 160 LKLYHISAPTC--IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFS 237 (840)
Q Consensus 160 ~kl~~~~p~~~--~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~ 237 (840)
..+....|... ...+.++.|..+ +.+.|+.|..+|+.+|..+....+. ....++....+..|+..+...+
T Consensus 228 ~~L~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~aL~~l~~~~~~-------~~~~~~~~g~v~~Lv~lL~~~~ 299 (528)
T 4b8j_A 228 SNFCRGKPQPSFEQTRPALPALARL-IHSNDEEVLTDACWALSYLSDGTND-------KIQAVIEAGVCPRLVELLLHPS 299 (528)
T ss_dssp HHHHCSSSCCCHHHHTTHHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSCHH-------HHHHHHHTTCHHHHHHHTTCSC
T ss_pred HHHHcCCCCCcHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHcCCHH-------HHHHHHHcCHHHHHHHHHcCCC
Confidence 99998755422 225678888887 6999999999999999999753221 0011222235677888888889
Q ss_pred hhHHHHHHHHHHhcCCCChhHHH-----HHHHHHHHHhccC-ChHHHHHHHHHHHhccCCCchhHHHHHH-HHHHHHHHh
Q 003201 238 EWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHA-NGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTL 310 (840)
Q Consensus 238 ~W~Qi~iL~lL~~y~p~~~~e~~-----~il~~l~~~L~~~-n~aVvleaik~il~l~~~~~~~~~~~l~-rl~~~L~~l 310 (840)
+..+...+..|..+...++.... .++..+..+|++. +..|..+|+.++..+....+.....+++ .+.++|+.+
T Consensus 300 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~l 379 (528)
T 4b8j_A 300 PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNL 379 (528)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHH
Confidence 99999999999998876654433 2467788888888 8999999999999887644333223332 466788899
Q ss_pred hcCCCchhHHHHHHHHHHHHhhCCCcccccccEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcCCHHHH
Q 003201 311 VSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIA 390 (840)
Q Consensus 311 Lss~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~ 390 (840)
|.+++++++..++..|..++... ++..++ .+++. .++.-|...+.+.|.+++
T Consensus 380 L~~~~~~v~~~a~~aL~nl~~~~----------------~~~~~~--------~l~~~----~~i~~L~~lL~~~d~~v~ 431 (528)
T 4b8j_A 380 LQTAEFDIKKEAAWAISNATSGG----------------SHDQIK--------YLVSE----GCIKPLCDLLICPDIRIV 431 (528)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHS----------------CHHHHH--------HHHHT----TCHHHHHHGGGCSCHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCC----------------CHHHHH--------HHHHC----CCHHHHHHHHcCCCHHHH
Confidence 98888999999999998887652 111111 11111 245666777788888888
Q ss_pred HHHHHHHHHHHhh
Q 003201 391 RESIRAVGKIALQ 403 (840)
Q Consensus 391 ~~~i~aI~~la~k 403 (840)
..++.+++.+...
T Consensus 432 ~~al~~L~~l~~~ 444 (528)
T 4b8j_A 432 TVCLEGLENILKV 444 (528)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888654
No 24
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.26 E-value=2.2e-09 Score=128.01 Aligned_cols=441 Identities=11% Similarity=0.056 Sum_probs=275.4
Q ss_pred chHHHHHHHHHhhcCCCChhhHhHHHHHhhCCChhh-----hH--HHHHHHHHhccCC-CChHHHHHHHHHHHHHHhhcC
Q 003201 96 DLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVAN-----LV--EYLVGPLGLGLKD-NNSYVRTVAVIGVLKLYHISA 167 (840)
Q Consensus 96 dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~-----i~--e~l~~~v~~~L~d-~~pyVRK~Aala~~kl~~~~p 167 (840)
++..-++..|.+=|.++|+.+|..|+++|+++...+ +. +..++.+.+.|.+ .++.||+.|+.++..+.....
T Consensus 10 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~ 89 (644)
T 2z6h_A 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 89 (644)
T ss_dssp --CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH
T ss_pred hhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh
Confidence 333445666777777899999999999988874321 11 2456777777765 489999999998887654311
Q ss_pred --CcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHH
Q 003201 168 --PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVL 245 (840)
Q Consensus 168 --~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL 245 (840)
..+.+.+.++.|..+ +.++|+.|...|+.+|..++...... +..+.....+..|+..+...++-.+...+
T Consensus 90 ~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~A~~aL~nL~~~~~~~-------~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~ 161 (644)
T 2z6h_A 90 GLLAIFKSGGIPALVKM-LGSPVDSVLFYAITTLHNLLLHQEGA-------KMAVRLAGGLQKMVALLNKTNVKFLAITT 161 (644)
T ss_dssp HHHHHHTTTHHHHHHHH-TTCSSHHHHHHHHHHHHHHHHHSTTH-------HHHHHHTTHHHHHHHGGGCCCHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHH-HhCCCHHHHHHHHHHHHHHHhCcchh-------HHHHHHCCChHHHHHHHCcCCHHHHHHHH
Confidence 122346788899997 79999999999999999998654321 11112223577788888777765666666
Q ss_pred HHHHhcCCCChhHHHH-----HHHHHHHHhccCC-hHHHHHHHHHHHhccCCCchhHHHHHH-HHHHHHHHhhcCCCchh
Q 003201 246 ELVAKYVPLDSNEIFD-----IMNLLEDRLQHAN-GAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQ 318 (840)
Q Consensus 246 ~lL~~y~p~~~~e~~~-----il~~l~~~L~~~n-~aVvleaik~il~l~~~~~~~~~~~l~-rl~~~L~~lLss~~~ni 318 (840)
+.|..+...+++.... .++.+..+|++.+ ..+...+++++..+... +.....+++ .+.++|+.++.+.++.+
T Consensus 162 ~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll~~~~~~~ 240 (644)
T 2z6h_A 162 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRL 240 (644)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTTTCSCHHH
T ss_pred HHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhcCCHHH
Confidence 7777666544443333 3566777777655 45667788888777643 333333333 35678888998888999
Q ss_pred HHHHHHHHHHHHhhCCCcc--cccccEE-EEccCCCHHHHHHHHHHHHhccCCC--CHHH-----HHHHHHHhhhcC-C-
Q 003201 319 SYAVLSHLHILVMRAPFIF--ASDYKHF-YCQYNEPSYVKKLKLEMLTAVANES--NTYE-----IVTELCEYAANV-D- 386 (840)
Q Consensus 319 rY~aL~~l~~l~~~~p~~~--~~~~~~f-~c~~~dp~~IK~~kLdiL~~L~n~~--Nv~~-----Iv~EL~~y~~~~-d- 386 (840)
+..++..|..++...+... ..-+..+ ....+++..++..+...|..|+... |... .+..|.+++.+. +
T Consensus 241 ~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~ 320 (644)
T 2z6h_A 241 VQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 320 (644)
T ss_dssp HHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCc
Confidence 9999999999876654311 1111111 1234667889999999999998753 3333 456677777763 3
Q ss_pred HHHHHHHHHHHHHHHhhcCCh---------HHHHHHHHHHhhhcCc-hhhHHHHHHHHHHHhhCCCcchh-----HHHHH
Q 003201 387 IPIARESIRAVGKIALQQYDV---------NAIVDRLLQFLEMEKD-YVTAEALVLVKDLLRKYPQWSHD-----CIAVV 451 (840)
Q Consensus 387 ~~~~~~~i~aI~~la~k~~~~---------~~~v~~Ll~LL~~~~~-~v~~e~v~~i~~il~~~p~~~~~-----~~~~l 451 (840)
.+++..++.+++.++...++. ...+..|+++|....+ .+..+++..+.+|... ++.+.. ++..+
T Consensus 321 ~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~-~~~~~~i~~~~~i~~L 399 (644)
T 2z6h_A 321 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRL 399 (644)
T ss_dssp HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC-HHHHHHHHHcCCHHHH
Confidence 789999999999998655531 1357888899987653 7888888888888753 322221 22223
Q ss_pred HhhhcccCCchHHHHHHHHHHcC--cCCCCCChHH--------------------------HHHHHHHhhccCCcHHHHH
Q 003201 452 GSISSQNVQEPKAKAALIWMLGE--YSQDMQDAPY--------------------------ILESLTENWEEEPSAEVRL 503 (840)
Q Consensus 452 ~~l~~~~i~~~~ak~a~iwilGE--y~~~i~~~~~--------------------------il~~l~~~~~~e~~~~vk~ 503 (840)
..++.+ .+++.+..++|.++. +.+... ..+ .+..+++-..... +.++.
T Consensus 400 v~lL~~--~~~~vr~~a~~al~n~~~~~~~~-~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~-~~v~~ 475 (644)
T 2z6h_A 400 VQLLVR--AHQDTQRRTSMGGTQQQFVEGVR-MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI-ENIQR 475 (644)
T ss_dssp HHHHHH--HHHHHTTC----------CCSSC-HHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSC-HHHHH
T ss_pred HHHHhc--cchhhhhHhhhccccchhccccc-HHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCC-HHHHH
Confidence 333221 123344444555554 221110 111 1334444444555 88888
Q ss_pred HHHHHHhHHhhcCChhHHHHHH-----HHHHhhccCCChHHHhHHHHHHHHccC
Q 003201 504 HLLTAVMKCFFKRPPETQKVLG-----AALAAGLADFHQDVHDRALFYHRLLQY 552 (840)
Q Consensus 504 ~lLta~~Kl~~~~p~e~~~~l~-----~vL~~~~~d~d~dVrdRA~~Y~rLL~~ 552 (840)
..+.++.++... + +....+. ..|.....+.|++||..|..-..-+..
T Consensus 476 ~a~~aL~~l~~~-~-~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 476 VAAGVLCELAQD-K-EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 527 (644)
T ss_dssp HHHHHHHHHHTS-H-HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC-H-HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 888888887642 2 3333332 244455678899999998876654443
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.26 E-value=2.7e-09 Score=122.97 Aligned_cols=435 Identities=11% Similarity=0.045 Sum_probs=251.3
Q ss_pred CchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCChh-----hhH--HHHHHHHHhccCC-CChHHHHHHHHHHHHHHhhc
Q 003201 95 PDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVA-----NLV--EYLVGPLGLGLKD-NNSYVRTVAVIGVLKLYHIS 166 (840)
Q Consensus 95 ~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~-----~i~--e~l~~~v~~~L~d-~~pyVRK~Aala~~kl~~~~ 166 (840)
++...-++..|.+=+.++|+.+|..|+.+|+++... .+. +..++.+.+.|.+ +++.+|+.|+.++.++....
T Consensus 12 ~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~ 91 (529)
T 1jdh_A 12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 91 (529)
T ss_dssp -----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence 444455677888888899999999999999987432 122 2466777777754 58999999999999975431
Q ss_pred C--CcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHH
Q 003201 167 A--PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLV 244 (840)
Q Consensus 167 p--~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~i 244 (840)
. ..+.+.+.++.|.++ +.++|+.|...|+.+|..++..++.. +..+.....+..|+..+...++-.+...
T Consensus 92 ~~~~~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~i~~~g~i~~L~~ll~~~~~~~~~~~ 163 (529)
T 1jdh_A 92 EGLLAIFKSGGIPALVKM-LGSPVDSVLFYAITTLHNLLLHQEGA-------KMAVRLAGGLQKMVALLNKTNVKFLAIT 163 (529)
T ss_dssp HHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHHHHCTTH-------HHHHHHHTHHHHHHHGGGCCCHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCCcch-------HHHHHHcCCHHHHHHHHhcCCHHHHHHH
Confidence 1 112245778889897 79999999999999999998754321 1111223356778887877776666666
Q ss_pred HHHHHhcCCCChhHHHH-----HHHHHHHHhccCCh-HHHHHHHHHHHhccCCCchhHHHHH-HHHHHHHHHhhcCCCch
Q 003201 245 LELVAKYVPLDSNEIFD-----IMNLLEDRLQHANG-AVVLSTIKVFLHLTLSMTDVHQQVY-ERIKAPLLTLVSSGSPE 317 (840)
Q Consensus 245 L~lL~~y~p~~~~e~~~-----il~~l~~~L~~~n~-aVvleaik~il~l~~~~~~~~~~~l-~rl~~~L~~lLss~~~n 317 (840)
...|..+...+++.... .++.+..++++.++ .+...+.+++..+... ++....+. ..+.++|+.++.+++++
T Consensus 164 ~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll~~~~~~ 242 (529)
T 1jdh_A 164 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQR 242 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTSSCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhCCChH
Confidence 67777665544433322 34556666766554 4555677777777643 33333333 24667888899888899
Q ss_pred hHHHHHHHHHHHHhhCCCcc--cccccEE-EEccCCCHHHHHHHHHHHHhccCCC--CHHH-----HHHHHHHhhhcC--
Q 003201 318 QSYAVLSHLHILVMRAPFIF--ASDYKHF-YCQYNEPSYVKKLKLEMLTAVANES--NTYE-----IVTELCEYAANV-- 385 (840)
Q Consensus 318 irY~aL~~l~~l~~~~p~~~--~~~~~~f-~c~~~dp~~IK~~kLdiL~~L~n~~--Nv~~-----Iv~EL~~y~~~~-- 385 (840)
++..++..+..+....+... ..-+..+ -...+++..++..+...|..|+..+ |... .++.|.+.+.+.
T Consensus 243 ~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~ 322 (529)
T 1jdh_A 243 LVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 322 (529)
T ss_dssp HHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCC
Confidence 99999988888876544311 1001111 1124555677777888887777642 3332 344555555542
Q ss_pred CHHHHHHHHHHHHHHHhhcCChH---------HHHHHHHHHhhhcCc-hhhHHHHHHHHHHHhhCCCcchhH-----HHH
Q 003201 386 DIPIARESIRAVGKIALQQYDVN---------AIVDRLLQFLEMEKD-YVTAEALVLVKDLLRKYPQWSHDC-----IAV 450 (840)
Q Consensus 386 d~~~~~~~i~aI~~la~k~~~~~---------~~v~~Ll~LL~~~~~-~v~~e~v~~i~~il~~~p~~~~~~-----~~~ 450 (840)
+.+++..++.+++.++...++.. ..+..|+++|....+ .+..+++..+.++... ++.+... +..
T Consensus 323 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~i~~ 401 (529)
T 1jdh_A 323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPR 401 (529)
T ss_dssp CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHHHHcCCHHH
Confidence 36777778888887776544321 135566777766553 6666777777777653 3322211 222
Q ss_pred HHhhhcccCCchHHHHHHHHHHcC--cCCCCCChHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCChhHHHHHH---
Q 003201 451 VGSISSQNVQEPKAKAALIWMLGE--YSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLG--- 525 (840)
Q Consensus 451 l~~l~~~~i~~~~ak~a~iwilGE--y~~~i~~~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~~~~l~--- 525 (840)
+..++.+ .+++.+..++|.++. +.+.. .+ .+++...+.++..+.. .+ +.+..+.
T Consensus 402 L~~ll~~--~~~~v~~~a~~~l~n~~~~~~~----------------~~-~~i~~~~~~al~~L~~-~~-~~~~~l~~~~ 460 (529)
T 1jdh_A 402 LVQLLVR--AHQDTQRRTSMGGTQQQFVEGV----------------RM-EEIVEGCTGALHILAR-DV-HNRIVIRGLN 460 (529)
T ss_dssp HHHHHHH--HHHHHC-----------CBTTB----------------CH-HHHHHHHHHHHHHHTT-SH-HHHHHHHHTT
T ss_pred HHHHHHH--HhHHHHHHHhcccCchhhhccc----------------cH-HHHHHHHHHHHHHHhc-Cc-hHHHHHhccC
Confidence 2222221 345566666777765 32211 11 3344455555555542 22 2111111
Q ss_pred --HHHHhhccCCChHHHhHHHHHHHHccCCHHHHHhh
Q 003201 526 --AALAAGLADFHQDVHDRALFYHRLLQYNVSVAERV 560 (840)
Q Consensus 526 --~vL~~~~~d~d~dVrdRA~~Y~rLL~~~~~~a~~v 560 (840)
..|-....+.+++||..|..-..-|..+++..+.+
T Consensus 461 ~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i 497 (529)
T 1jdh_A 461 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI 497 (529)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred CccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 22333345778899988876554444555444433
No 26
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.24 E-value=4.4e-09 Score=134.39 Aligned_cols=462 Identities=11% Similarity=0.065 Sum_probs=285.3
Q ss_pred CChHHHHHHHHHHHHHHhcC---CC---ccchhhhhhhhccCCCcchHHHHHHHHHHhccCCCc-hHHHHHHHHHhhcCC
Q 003201 39 GIDDSKRELFKKVISYMTIG---ID---VSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPD-LALLTINFLQRDCKD 111 (840)
Q Consensus 39 ~~~~~kk~~lkKlI~~m~lG---~D---vS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~d-l~lL~iNtl~KDl~~ 111 (840)
.+.+.|+.+...+.-..... .| ...+...+++.+.+++...|+.+...+..+++.-++ ..--+++.+.+-+.|
T Consensus 18 ~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d 97 (1230)
T 1u6g_C 18 SDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLS 97 (1230)
T ss_dssp SSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC
Confidence 45577888877765544321 11 113455566788889999999999999998866554 233567888888999
Q ss_pred CChhhHhHHHHHhhCCC---hh---------hhHHHHHHHHHhccCC-CChHHHHHHHHHHHHHHhhcCCcccC--CCch
Q 003201 112 EDPMIRGLALRSLCSLR---VA---------NLVEYLVGPLGLGLKD-NNSYVRTVAVIGVLKLYHISAPTCID--ADFP 176 (840)
Q Consensus 112 ~Np~ir~LALr~l~~I~---~~---------~i~e~l~~~v~~~L~d-~~pyVRK~Aala~~kl~~~~p~~~~~--~~~~ 176 (840)
+++.+|..|.++++.+. .+ ...+.+++.+.+++.| +++.||..|+.++..+....++.+.. +.++
T Consensus 98 ~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll 177 (1230)
T 1u6g_C 98 DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSIL 177 (1230)
T ss_dssp SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 99999988888887653 12 2678899999999984 88999999999999999877765521 2234
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChh----HHHHHHHHHHhcC
Q 003201 177 PTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEW----AQCLVLELVAKYV 252 (840)
Q Consensus 177 ~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W----~Qi~iL~lL~~y~ 252 (840)
+.+... +.|+++.|...|+.++..+....+.. .+. .++..|++.+...++| .-+..+..+....
T Consensus 178 ~~l~~~-L~~~~~~vR~~a~~al~~l~~~~~~~----------~~~-~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~ 245 (1230)
T 1u6g_C 178 TCLLPQ-LTSPRLAVRKRTIIALGHLVMSCGNI----------VFV-DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA 245 (1230)
T ss_dssp HHHGGG-GGCSSHHHHHHHHHHHHHHTTTC--------------CT-THHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHS
T ss_pred HHHHHH-HcCCcHHHHHHHHHHHHHHHHhcCHH----------HHH-HHHHHHHHHhccCCchhHHHHHHHHHHHHHHHh
Confidence 455555 58999999999999999987643321 111 2455666655443322 1344444444433
Q ss_pred CCCh-hHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCC-chhHHHHHHHHHHHHHHhhcC-----------------
Q 003201 253 PLDS-NEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM-TDVHQQVYERIKAPLLTLVSS----------------- 313 (840)
Q Consensus 253 p~~~-~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~-~~~~~~~l~rl~~~L~~lLss----------------- 313 (840)
+..- .....+++.+...++..+..|.-.+..++-.+.... .++ ...+..+.+.++..+..
T Consensus 246 ~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~ 324 (1230)
T 1u6g_C 246 GHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV-YPHVSTIINICLKYLTYDPNYNYDDEDEDENAMD 324 (1230)
T ss_dssp SGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCC-HHHHHHHHHHHTTCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHH-HHhHHHHHHHHHHHhCCCCCCCCccccccccccc
Confidence 3210 112357777777777766655444444443332111 112 12344555556555431
Q ss_pred --------------------CCchhHHHHHHHHHHHHhhCCCcccccccEE-----EEccCCCHHHHHHHHHHHHhccCC
Q 003201 314 --------------------GSPEQSYAVLSHLHILVMRAPFIFASDYKHF-----YCQYNEPSYVKKLKLEMLTAVANE 368 (840)
Q Consensus 314 --------------------~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f-----~c~~~dp~~IK~~kLdiL~~L~n~ 368 (840)
...++|..++..+..++...|..|.+++..+ .+..+....+|...++.|..++..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 404 (1230)
T 1u6g_C 325 ADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQ 404 (1230)
T ss_dssp --------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 1134689999999999987776555544221 122455578999888877666531
Q ss_pred -------------------------CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCC-----hHHHHHHHHHHh
Q 003201 369 -------------------------SNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD-----VNAIVDRLLQFL 418 (840)
Q Consensus 369 -------------------------~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~-----~~~~v~~Ll~LL 418 (840)
..+..|+.-+...+.+.+...+..++.+++.++...++ ...++..+++.|
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L 484 (1230)
T 1u6g_C 405 TRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSL 484 (1230)
T ss_dssp HCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHT
T ss_pred hccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHH
Confidence 11223444444457788888899999999999987653 235677777888
Q ss_pred hhcCc--hhhHHHHHHHHHHHhhCC-Ccc-hh---HHHHHHhhhcccCCchHHHHHHHHHHcCcCCCC------------
Q 003201 419 EMEKD--YVTAEALVLVKDLLRKYP-QWS-HD---CIAVVGSISSQNVQEPKAKAALIWMLGEYSQDM------------ 479 (840)
Q Consensus 419 ~~~~~--~v~~e~v~~i~~il~~~p-~~~-~~---~~~~l~~l~~~~i~~~~ak~a~iwilGEy~~~i------------ 479 (840)
..... .+..+++..+..++.... +.. .+ .+..+...+.+ ..+.++..+++.+|+....+
T Consensus 485 ~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d--~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 562 (1230)
T 1u6g_C 485 NDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGD--PFYKITSEALLVTQQLVKVIRPLDQPSSFDAT 562 (1230)
T ss_dssp TCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCH
T ss_pred cCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcc--cchHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence 76543 677777777887776443 211 11 11222121122 23444444455555443211
Q ss_pred CChHHHHHHHHHhh--ccCCcHHHHHHHHHHHhHHhhcC
Q 003201 480 QDAPYILESLTENW--EEEPSAEVRLHLLTAVMKCFFKR 516 (840)
Q Consensus 480 ~~~~~il~~l~~~~--~~e~~~~vk~~lLta~~Kl~~~~ 516 (840)
+-.+.++..++..+ .+.+ +++|...+.++..+....
T Consensus 563 ~~~~~ll~~ll~~l~~~d~~-~~vr~~a~~~lg~L~~~~ 600 (1230)
T 1u6g_C 563 PYIKDLFTCTIKRLKAADID-QEVKERAISCMGQIICNL 600 (1230)
T ss_dssp HHHHHHHHHHHHHHSCSSSC-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHh
Confidence 11346677777777 5566 899998888888877554
No 27
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.22 E-value=1.4e-10 Score=123.25 Aligned_cols=254 Identities=13% Similarity=0.025 Sum_probs=157.7
Q ss_pred HHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHH
Q 003201 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (840)
Q Consensus 101 ~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~ 180 (840)
+++.+.+.|.|+|+.+|..|++.|+.++.++ ..+.+.++|.|+++.||..|+.++.++... ++.+ +.+++.|.
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~----~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-~~~~--~~l~~~L~ 96 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGGQD----AVRLAIEFCSDKNYIRRDIGAFILGQIKIC-KKCE--DNVFNILN 96 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCCHH----HHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-TTTH--HHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCCch----HHHHHHHHHcCCCHHHHHHHHHHHHHhccc-cccc--hHHHHHHH
Confidence 5788999999999999999999999999765 455667888999999999999999887532 2222 22344555
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHH
Q 003201 181 HLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF 260 (840)
Q Consensus 181 ~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~ 260 (840)
+.+++|+|+.|..+|+.+|..+...++. ..+..+..|...+.+.+++.+...+..|..+...
T Consensus 97 ~~~~~d~~~~vr~~a~~aL~~l~~~~~~------------~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~------ 158 (280)
T 1oyz_A 97 NMALNDKSACVRATAIESTAQRCKKNPI------------YSPKIVEQSQITAFDKSTNVRRATAFAISVINDK------ 158 (280)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHHHCGG------------GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhccCCc------------ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH------
Confidence 4346899999999999999988643321 0112344555556666666666666666655421
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCccccc
Q 003201 261 DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASD 340 (840)
Q Consensus 261 ~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~ 340 (840)
..++.+...+++.++.|...|+..+..+....+ .+.+.|..++.++++
T Consensus 159 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~--------~~~~~L~~~l~d~~~------------------------ 206 (280)
T 1oyz_A 159 ATIPLLINLLKDPNGDVRNWAAFAININKYDNS--------DIRDCFVEMLQDKNE------------------------ 206 (280)
T ss_dssp CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH--------HHHHHHHHHTTCSCH------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH--------HHHHHHHHHhcCCCH------------------------
Confidence 134445555556666666666665554432111 123334444444444
Q ss_pred ccEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhh
Q 003201 341 YKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEM 420 (840)
Q Consensus 341 ~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~~~~v~~Ll~LL~~ 420 (840)
.+|..++..|..+.++..+..++ ..+.+.+ ++..++.++|.++.. .++..|.+++..
T Consensus 207 ------------~vR~~A~~aL~~~~~~~~~~~L~----~~l~d~~--vr~~a~~aL~~i~~~-----~~~~~L~~~l~~ 263 (280)
T 1oyz_A 207 ------------EVRIEAIIGLSYRKDKRVLSVLC----DELKKNT--VYDDIIEAAGELGDK-----TLLPVLDTMLYK 263 (280)
T ss_dssp ------------HHHHHHHHHHHHTTCGGGHHHHH----HHHTSSS--CCHHHHHHHHHHCCG-----GGHHHHHHHHTT
T ss_pred ------------HHHHHHHHHHHHhCCHhhHHHHH----HHhcCcc--HHHHHHHHHHhcCch-----hhhHHHHHHHhc
Confidence 45555555555555444333333 3333333 777888888887653 456777777764
Q ss_pred c-CchhhHHHHHHHH
Q 003201 421 E-KDYVTAEALVLVK 434 (840)
Q Consensus 421 ~-~~~v~~e~v~~i~ 434 (840)
. .+.+..+++.+++
T Consensus 264 ~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 264 FDDNEIITSAIDKLK 278 (280)
T ss_dssp SSCCHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHhh
Confidence 3 3456666665554
No 28
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.21 E-value=4.6e-09 Score=128.59 Aligned_cols=469 Identities=12% Similarity=0.045 Sum_probs=278.9
Q ss_pred hhccCCCcchHHHHHHHHHHhccCCCchH----H-HHHHHHHhhcCCCChhhHhHHHHHhhCCChhh-------------
Q 003201 70 MCSATSDIVLKKMCYLYVGNYAKVNPDLA----L-LTINFLQRDCKDEDPMIRGLALRSLCSLRVAN------------- 131 (840)
Q Consensus 70 ~l~~S~d~~~KkL~YLyl~~~~~~~~dl~----l-L~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~------------- 131 (840)
.++...+...|+.++-.+..+....++.. . -++..+.+-+.+.++.+|..|+.+++.+....
T Consensus 224 ~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 303 (876)
T 1qgr_A 224 EATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303 (876)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhcccccc
Confidence 45667788888888888887776655432 1 34555666678899999999998887664321
Q ss_pred --------------hHHHHHHHHHhccC-------CCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChh
Q 003201 132 --------------LVEYLVGPLGLGLK-------DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQ 190 (840)
Q Consensus 132 --------------i~e~l~~~v~~~L~-------d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~ 190 (840)
..+.+++.+.+.+. |.++.||+.|+.++..+....++.+. +.+++.+... +.|+++.
T Consensus 304 ~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~-~~~l~~l~~~-l~~~~~~ 381 (876)
T 1qgr_A 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV-PHVLPFIKEH-IKNPDWR 381 (876)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGH-HHHHHHHHHH-TTCSSHH
T ss_pred CCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhH-HHHHHHHHHH-ccCCChH
Confidence 23566666767664 45789999999999999887775442 4566777776 6899999
Q ss_pred HHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCC------ChhHHHHHHH
Q 003201 191 VVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL------DSNEIFDIMN 264 (840)
Q Consensus 191 Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~------~~~e~~~il~ 264 (840)
|..+|+.++..|...-+. +...-..+.++..+++.+.+.++..+...+..+.++... .......+++
T Consensus 382 ~r~~a~~~l~~i~~~~~~-------~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~ 454 (876)
T 1qgr_A 382 YRDAAVMAFGCILEGPEP-------SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQ 454 (876)
T ss_dssp HHHHHHHHHHHTSSSSCH-------HHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHH
Confidence 999999999988743210 000001134567777888888888888888877776422 2234567778
Q ss_pred HHHHHhccCChHHHHHHHHHHHhccCCC---------------chhHHHHHHHHHHHHHHhhcCC---CchhHHHHHHHH
Q 003201 265 LLEDRLQHANGAVVLSTIKVFLHLTLSM---------------TDVHQQVYERIKAPLLTLVSSG---SPEQSYAVLSHL 326 (840)
Q Consensus 265 ~l~~~L~~~n~aVvleaik~il~l~~~~---------------~~~~~~~l~rl~~~L~~lLss~---~~nirY~aL~~l 326 (840)
.+...+++. +.|...|++++..+.... ..+. ..+..+.+.|..++... +.++|-.+++.+
T Consensus 455 ~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l 532 (876)
T 1qgr_A 455 CLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLS-SSFELIVQKLLETTDRPDGHQNNLRSSAYESL 532 (876)
T ss_dssp HHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSST-TTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHH
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhh-HhHHHHHHHHHHHHhCcCcchhhHHHHHHHHH
Confidence 787777764 667666666665443110 0011 12334555555555432 235555555554
Q ss_pred HHHHhh--------------------------------------------------------CC-CcccccccEE----E
Q 003201 327 HILVMR--------------------------------------------------------AP-FIFASDYKHF----Y 345 (840)
Q Consensus 327 ~~l~~~--------------------------------------------------------~p-~~~~~~~~~f----~ 345 (840)
..++.. .+ .-+.++...+ +
T Consensus 533 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~ 612 (876)
T 1qgr_A 533 MEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLL 612 (876)
T ss_dssp HHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHH
T ss_pred HHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHH
Confidence 444433 22 2222222111 0
Q ss_pred -EccCCC--HHHHHHHHHHHHhccCC------CCHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHHhhcCC-h----HHH
Q 003201 346 -CQYNEP--SYVKKLKLEMLTAVANE------SNTYEIVTELCEYAANV-DIPIARESIRAVGKIALQQYD-V----NAI 410 (840)
Q Consensus 346 -c~~~dp--~~IK~~kLdiL~~L~n~------~Nv~~Iv~EL~~y~~~~-d~~~~~~~i~aI~~la~k~~~-~----~~~ 410 (840)
+..+.. .++|...+..+..++.. .-+..++..|...+.+. +.+++..++..+|.++....+ . ..+
T Consensus 613 ~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i 692 (876)
T 1qgr_A 613 RMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEV 692 (876)
T ss_dssp HHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 111111 36788888887776642 23566777777777776 788888888888888876542 2 335
Q ss_pred HHHHHHHhhhc--CchhhHHHHHHHHHHHhhCCCcc-hh---HHHHHHhhhcccC--Cch-------HHHHHHH------
Q 003201 411 VDRLLQFLEME--KDYVTAEALVLVKDLLRKYPQWS-HD---CIAVVGSISSQNV--QEP-------KAKAALI------ 469 (840)
Q Consensus 411 v~~Ll~LL~~~--~~~v~~e~v~~i~~il~~~p~~~-~~---~~~~l~~l~~~~i--~~~-------~ak~a~i------ 469 (840)
+..+++.+... ...+...++..+.+|....+.-. .+ ++..+........ .++ ..+.++.
T Consensus 693 ~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i 772 (876)
T 1qgr_A 693 MQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGI 772 (876)
T ss_dssp HHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 56666666652 23577777788888876554322 22 2222222221111 111 3333322
Q ss_pred -HHHcCcC-------CCC-CChHHHHHHHHHhhccC--CcHHHHHHHHHHHhHHhhcCCh-hHH-----HHHHHHHHhhc
Q 003201 470 -WMLGEYS-------QDM-QDAPYILESLTENWEEE--PSAEVRLHLLTAVMKCFFKRPP-ETQ-----KVLGAALAAGL 532 (840)
Q Consensus 470 -wilGEy~-------~~i-~~~~~il~~l~~~~~~e--~~~~vk~~lLta~~Kl~~~~p~-e~~-----~~l~~vL~~~~ 532 (840)
-.+|+.. ..+ +-.+.++..+....... + ..||...+.++.++....+. +.. ..+..++..+.
T Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l 851 (876)
T 1qgr_A 773 VQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHT-DGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGR 851 (876)
T ss_dssp HHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCC-HHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHh
Confidence 2344421 111 12345554333333333 4 88999999999998866654 333 34556666567
Q ss_pred cCCChHHHhHHHHHHHHc
Q 003201 533 ADFHQDVHDRALFYHRLL 550 (840)
Q Consensus 533 ~d~d~dVrdRA~~Y~rLL 550 (840)
.|.++++|+-|..-...+
T Consensus 852 ~~~~~~~r~~a~~a~~~~ 869 (876)
T 1qgr_A 852 RSKTNKAKTLARWATKEL 869 (876)
T ss_dssp HCSCHHHHHHHHHHHHHH
T ss_pred hcCCHhHHHHHHHHHHHH
Confidence 788999999988765443
No 29
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.15 E-value=2.1e-09 Score=121.23 Aligned_cols=251 Identities=12% Similarity=0.055 Sum_probs=159.3
Q ss_pred HHHHhhcCCCChhhHhHHHHHhhCCCh---hhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcC-----------C
Q 003201 103 NFLQRDCKDEDPMIRGLALRSLCSLRV---ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISA-----------P 168 (840)
Q Consensus 103 Ntl~KDl~~~Np~ir~LALr~l~~I~~---~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p-----------~ 168 (840)
..+...+.++|+.+|--|-..|..+.. +++...+...+.. .+.++.||+.|+..+-++.+.+. .
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~--~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~ 81 (462)
T 1ibr_B 4 ITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN--PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (462)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHhccccchHHHHHHHhhhh
Confidence 455566888999999999888887664 5555555544443 33478999999999888864321 0
Q ss_pred ccc---CCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccC--ChhHHHH
Q 003201 169 TCI---DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEF--SEWAQCL 243 (840)
Q Consensus 169 ~~~---~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~--~~W~Qi~ 243 (840)
.+. ...+.+.|..+ +.+.++.| ..+..++.+|...+... ..| +..+..|+..+.+. ++-.+..
T Consensus 82 ~l~~~~~~~ik~~ll~~-l~~~~~~v-~~~~~~i~~ia~~~~~~------~~w----~~ll~~L~~~l~~~~~~~~~r~~ 149 (462)
T 1ibr_B 82 AIDANARREVKNYVLQT-LGTETYRP-SSASQCVAGIACAEIPV------NQW----PELIPQLVANVTNPNSTEHMKES 149 (462)
T ss_dssp TSCHHHHHHHHHHHHHH-TTCCCSSS-CSHHHHHHHHHHHHGGG------TCC----TTHHHHHHHHHHCTTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH-hCCCCchh-hHHHHHHHHHHHHhccc------ccc----HHHHHHHHHHhccCCCCHHHHHH
Confidence 010 01233445555 57788888 77777888887653210 011 12455666666665 5544555
Q ss_pred HHHHHHhcC----CC-ChhHHHHHHHHHHHHhccC--ChHHHHHHHHHHHhccCCCch-hH-HHHHHHHHHHHHHhhcCC
Q 003201 244 VLELVAKYV----PL-DSNEIFDIMNLLEDRLQHA--NGAVVLSTIKVFLHLTLSMTD-VH-QQVYERIKAPLLTLVSSG 314 (840)
Q Consensus 244 iL~lL~~y~----p~-~~~e~~~il~~l~~~L~~~--n~aVvleaik~il~l~~~~~~-~~-~~~l~rl~~~L~~lLss~ 314 (840)
.+..|..++ +. -......+++.+...+++. +..|..+|++++..+.....+ .. .....-+...|..++.+.
T Consensus 150 al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 229 (462)
T 1ibr_B 150 TLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP 229 (462)
T ss_dssp HHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC
Confidence 555555432 21 1233456788888888887 788999999998765322111 10 001112344556677788
Q ss_pred CchhHHHHHHHHHHHHhhCCCccccccc-EEE-----EccCCCHHHHHHHHHHHHhccC
Q 003201 315 SPEQSYAVLSHLHILVMRAPFIFASDYK-HFY-----CQYNEPSYVKKLKLEMLTAVAN 367 (840)
Q Consensus 315 ~~nirY~aL~~l~~l~~~~p~~~~~~~~-~f~-----c~~~dp~~IK~~kLdiL~~L~n 367 (840)
++++|-.+++.+..++..+|..|.+|+. .++ +..+++..+|..+++.+..++.
T Consensus 230 ~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~ 288 (462)
T 1ibr_B 230 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (462)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 8999999999999999999988887766 332 2345667788888888877764
No 30
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.07 E-value=1.1e-08 Score=118.55 Aligned_cols=297 Identities=13% Similarity=0.115 Sum_probs=203.0
Q ss_pred HHHHHHhccCC-CChHHHHHHHHHHHHHHhhcCCc---ccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcch
Q 003201 136 LVGPLGLGLKD-NNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSE 211 (840)
Q Consensus 136 l~~~v~~~L~d-~~pyVRK~Aala~~kl~~~~p~~---~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~ 211 (840)
++|.+.++|.+ .+|.|+..|+-|+..+-.-+++. +.+.+.++.|..+ |.++|+.|.-.|+.+|..|+...+.
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~l-L~s~~~~v~e~A~~aL~nLa~d~~~--- 176 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISL-LASPHAHISEQAVWALGNIAGDGSA--- 176 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHHTTCHH---
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHH-HcCCCHHHHHHHHHHHHHHHhCCHH---
Confidence 57778888864 56899999999999987655542 3456788999997 7999999999999999999865432
Q ss_pred HHHHHHHhhccHHHHHHHHHhhccCC-----hhHHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHHhccCChHHHHHH
Q 003201 212 EASREREALISKPVIYYLLNRIKEFS-----EWAQCLVLELVAKYVPL-----DSNEIFDIMNLLEDRLQHANGAVVLST 281 (840)
Q Consensus 212 ~~~~~~~~li~~~~~~~Ll~~l~~~~-----~W~Qi~iL~lL~~y~p~-----~~~e~~~il~~l~~~L~~~n~aVvlea 281 (840)
+++ ..+....+..|+..+...+ ...+..+...+...+.. .......++..+..+|++.+..|...|
T Consensus 177 --~r~--~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A 252 (510)
T 3ul1_B 177 --FRD--LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 252 (510)
T ss_dssp --HHH--HHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred --HHH--HHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHH
Confidence 221 1122223445565554332 22333344444443321 112345678888899999999999999
Q ss_pred HHHHHhccCCCchhHHHHH-HHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCC----ccccc-ccEE-EEccCCCHHH
Q 003201 282 IKVFLHLTLSMTDVHQQVY-ERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF----IFASD-YKHF-YCQYNEPSYV 354 (840)
Q Consensus 282 ik~il~l~~~~~~~~~~~l-~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~----~~~~~-~~~f-~c~~~dp~~I 354 (840)
+.++.++.....+....+. ..+.+.|+.+|.+.++.++.-+++.+..|+...+. ++... +..+ -+..+.+..|
T Consensus 253 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v 332 (510)
T 3ul1_B 253 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 332 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHH
T ss_pred HHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHH
Confidence 9999998765433222222 23556788999999999999999999888754432 11111 1222 2345677899
Q ss_pred HHHHHHHHHhccCC--CCHHH-----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCC--h-----HHHHHHHHHHhhh
Q 003201 355 KKLKLEMLTAVANE--SNTYE-----IVTELCEYAANVDIPIARESIRAVGKIALQQYD--V-----NAIVDRLLQFLEM 420 (840)
Q Consensus 355 K~~kLdiL~~L~n~--~Nv~~-----Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~--~-----~~~v~~Ll~LL~~ 420 (840)
|..+...|..|+.. .+... ++.-|...+.+.|.+++++++.+|+.++..-.. . ..++..|+++|+.
T Consensus 333 ~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~ 412 (510)
T 3ul1_B 333 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 412 (510)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC
Confidence 99999999998743 33332 456678888899999999999999999875321 1 1357788999988
Q ss_pred cCchhhHHHHHHHHHHHhhC
Q 003201 421 EKDYVTAEALVLVKDLLRKY 440 (840)
Q Consensus 421 ~~~~v~~e~v~~i~~il~~~ 440 (840)
....+...++..+.+|++..
T Consensus 413 ~d~~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 413 KDTKIIQVILDAISNIFQAA 432 (510)
T ss_dssp SCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 77777777777777777643
No 31
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.06 E-value=9.9e-08 Score=109.80 Aligned_cols=452 Identities=12% Similarity=0.051 Sum_probs=264.2
Q ss_pred hhhhhhhccCCCcchHHHHHHHHHHhccCCCch-HH----HHHHHHHhhcC-CCChhhHhHHHHHhhCCChh-h----hH
Q 003201 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDL-AL----LTINFLQRDCK-DEDPMIRGLALRSLCSLRVA-N----LV 133 (840)
Q Consensus 65 F~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl-~l----L~iNtl~KDl~-~~Np~ir~LALr~l~~I~~~-~----i~ 133 (840)
.+..++++.+++...+.-+-.++..++..++.. .+ =++..+.+-+. ++|+.+|-.|.++|.++... + +.
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 98 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF 98 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHH
Confidence 555667777777777777777777776543321 11 13455555554 35888998888888876432 2 21
Q ss_pred -HHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCc---ccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCc
Q 003201 134 -EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAST 209 (840)
Q Consensus 134 -e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~---~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~ 209 (840)
...++.+.++|.++++-||+.|+.++.++...+++. +.+.+.++.|.++ +.++++.+...+..+|..+...++.
T Consensus 99 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l-l~~~~~~~~~~~~~~L~~la~~~~~- 176 (529)
T 1jdh_A 99 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL-LNKTNVKFLAITTDCLQILAYGNQE- 176 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHG-GGCCCHHHHHHHHHHHHHHHTTCHH-
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHH-HhcCCHHHHHHHHHHHHHHHhCCHH-
Confidence 135778889999999999999999999998876542 2245778899997 6889999999888888877653221
Q ss_pred chHHHHHHHhhccHHHHHHHHHhhccCC-hhHHHHHHHHHHhcCCCChhHHH-----HHHHHHHHHhccCChHHHHHHHH
Q 003201 210 SEEASREREALISKPVIYYLLNRIKEFS-EWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAVVLSTIK 283 (840)
Q Consensus 210 ~~~~~~~~~~li~~~~~~~Ll~~l~~~~-~W~Qi~iL~lL~~y~p~~~~e~~-----~il~~l~~~L~~~n~aVvleaik 283 (840)
+.. .+.....+..|+..+.+.+ +..+.....+|..+... ++... ..++.+..++++.+..+...++.
T Consensus 177 ----~~~--~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~ 249 (529)
T 1jdh_A 177 ----SKL--IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 249 (529)
T ss_dssp ----HHH--HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHH
T ss_pred ----HHH--HHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHH
Confidence 110 1111123445555454443 33333444554444322 22121 35667777888888899999999
Q ss_pred HHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCC----ccccc-ccE---EEEccCCCHHHH
Q 003201 284 VFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF----IFASD-YKH---FYCQYNEPSYVK 355 (840)
Q Consensus 284 ~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~----~~~~~-~~~---f~c~~~dp~~IK 355 (840)
++.++....+.. .....+.+.|+.++.+.+++++..+...+..|....+. +.... +.. +....+++..++
T Consensus 250 ~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~ 327 (529)
T 1jdh_A 250 TLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 327 (529)
T ss_dssp HHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHH
Confidence 988876433221 11234677889999999999999999999888765431 11111 111 111124457899
Q ss_pred HHHHHHHHhccCCC-C----HHH-----HHHHHHHhhhcCC-HHHHHHHHHHHHHHHhhcCChH-----HHHHHHHHHhh
Q 003201 356 KLKLEMLTAVANES-N----TYE-----IVTELCEYAANVD-IPIARESIRAVGKIALQQYDVN-----AIVDRLLQFLE 419 (840)
Q Consensus 356 ~~kLdiL~~L~n~~-N----v~~-----Iv~EL~~y~~~~d-~~~~~~~i~aI~~la~k~~~~~-----~~v~~Ll~LL~ 419 (840)
..++..|..|+... . ... .+.-|...+.+.+ .++++.++.+|+.++..-.... ..+..|++++.
T Consensus 328 ~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~ 407 (529)
T 1jdh_A 328 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV 407 (529)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHH
Confidence 99999999998642 1 112 3455677777765 5899999999999986422211 13445555555
Q ss_pred hcCchhhHHHHHHHHHHHhhCCCcchhHHHHHHhhhcccCCchHHHHHHHHHHcCcCCCCCChH-----HHHHHHHHhhc
Q 003201 420 MEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAP-----YILESLTENWE 494 (840)
Q Consensus 420 ~~~~~v~~e~v~~i~~il~~~p~~~~~~~~~l~~l~~~~i~~~~ak~a~iwilGEy~~~i~~~~-----~il~~l~~~~~ 494 (840)
.+...+..++...+.+.. +. +.....+.+..++..++..+....+.. ..+..+++-..
T Consensus 408 ~~~~~v~~~a~~~l~n~~----------------~~-~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~ 470 (529)
T 1jdh_A 408 RAHQDTQRRTSMGGTQQQ----------------FV-EGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLY 470 (529)
T ss_dssp HHHHHHC---------------------------CB-TTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHhHHHHHHHhcccCchh----------------hh-ccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHc
Confidence 433333333322222210 10 111112222222222222222111111 12344555455
Q ss_pred cCCcHHHHHHHHHHHhHHhhcCChhHHHHHH-----HHHHhhccCCChHHHhHHHHHH
Q 003201 495 EEPSAEVRLHLLTAVMKCFFKRPPETQKVLG-----AALAAGLADFHQDVHDRALFYH 547 (840)
Q Consensus 495 ~e~~~~vk~~lLta~~Kl~~~~p~e~~~~l~-----~vL~~~~~d~d~dVrdRA~~Y~ 547 (840)
+.. +.++.....++..+... + +....+. ..|.....+.|++||.+|..-.
T Consensus 471 ~~~-~~v~~~a~~~l~~l~~~-~-~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL 525 (529)
T 1jdh_A 471 SPI-ENIQRVAAGVLCELAQD-K-EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 525 (529)
T ss_dssp CSC-HHHHHHHHHHHHHHTTS-H-HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred CCc-hHHHHHHHHHHHHHhcC-H-HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHH
Confidence 555 88998888888887532 2 2222221 3344456789999999987644
No 32
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.01 E-value=2.1e-08 Score=103.38 Aligned_cols=226 Identities=16% Similarity=0.089 Sum_probs=173.6
Q ss_pred HHHHHhhcCCCChhhHhHHHHHhhCCCh--hhhHH-----HHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCc---cc
Q 003201 102 INFLQRDCKDEDPMIRGLALRSLCSLRV--ANLVE-----YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CI 171 (840)
Q Consensus 102 iNtl~KDl~~~Np~ir~LALr~l~~I~~--~~i~e-----~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~---~~ 171 (840)
+..|.+-+.++|+.+|..|+++++++.. ++... ..++.+.++|.++++.||..|+.++..+...+++. +.
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 5677888889999999999999888732 22222 36788899999999999999999999998754542 23
Q ss_pred CCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 003201 172 DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY 251 (840)
Q Consensus 172 ~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y 251 (840)
+.+.++.|..+ +.++|+.|..+|+.+|..+...++. +.. .++....+..|++.+.+.++..+...+..|..+
T Consensus 84 ~~~~i~~l~~l-l~~~~~~v~~~a~~~L~~l~~~~~~-----~~~--~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l 155 (252)
T 4hxt_A 84 DAGGVEVLVKL-LTSTDSEVQKEAARALANIASGPDE-----AIK--AIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 155 (252)
T ss_dssp HTTHHHHHHHH-TTCSSHHHHHHHHHHHHHHTTSCHH-----HHH--HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHH-HcCCCHHHHHHHHHHHHHHHcCCHH-----HHH--HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 45778899897 6899999999999999999854332 111 122233577888888899999999999999999
Q ss_pred CCCChhHHH-----HHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHH-HHHHHHHHhhcCCCchhHHHHHHH
Q 003201 252 VPLDSNEIF-----DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSH 325 (840)
Q Consensus 252 ~p~~~~e~~-----~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~-rl~~~L~~lLss~~~nirY~aL~~ 325 (840)
...++.... ..++.+..++++.++.|...|+.++..+....+.....+.+ .+.+.|+.++.++++++|..++..
T Consensus 156 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~ 235 (252)
T 4hxt_A 156 ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRA 235 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHH
Confidence 876654332 25677888999999999999999999987644443333322 356788899999999999999999
Q ss_pred HHHHHhhCCC
Q 003201 326 LHILVMRAPF 335 (840)
Q Consensus 326 l~~l~~~~p~ 335 (840)
|..|....+.
T Consensus 236 L~~l~~~~~~ 245 (252)
T 4hxt_A 236 LENIKSGGWL 245 (252)
T ss_dssp HHHHHHTCBC
T ss_pred HHHHHcCCCc
Confidence 9999987654
No 33
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.00 E-value=1.4e-07 Score=111.95 Aligned_cols=386 Identities=11% Similarity=0.104 Sum_probs=247.5
Q ss_pred chHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCC--ChhhhHHHHHHHHHhccCCCChHHHHHH
Q 003201 78 VLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL--RVANLVEYLVGPLGLGLKDNNSYVRTVA 155 (840)
Q Consensus 78 ~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I--~~~~i~e~l~~~v~~~L~d~~pyVRK~A 155 (840)
.+||+.|+++.-+ .-+.+..-+++ =++++|...|=++--.++.+ ..++++-.++..+++-|.|++|+||--|
T Consensus 58 ~l~Kli~l~~~G~--d~s~~~~~vvk----l~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lA 131 (621)
T 2vgl_A 58 YVCKLLFIFLLGH--DIDFGHMEAVN----LLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLA 131 (621)
T ss_dssp HHHHHHHHHHHSC--CCCSCHHHHHH----GGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHcCC--CCchhHHHHHH----HhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 4789999877644 23334333333 45788998886665555554 3367788889999999999999999999
Q ss_pred HHHHHHHHhhcCCcccCCCchHHHHHHHh--cCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhh
Q 003201 156 VIGVLKLYHISAPTCIDADFPPTLKHLML--NDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI 233 (840)
Q Consensus 156 ala~~kl~~~~p~~~~~~~~~~~L~~lLL--~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l 233 (840)
+-++.++ ..|+.+ +.+.+.+.++ + .|++|-|.-.|+.++..+.+.+|+... ....+.+|...+
T Consensus 132 Lr~L~~i--~~~e~~--~~l~~~v~~~-l~~~d~~~~VRK~A~~al~kl~~~~p~~~~----------~~~~~~~l~~lL 196 (621)
T 2vgl_A 132 LHCIANV--GSREMA--EAFAGEIPKI-LVAGDTMDSVKQSAALCLLRLYRTSPDLVP----------MGDWTSRVVHLL 196 (621)
T ss_dssp HHHHHHH--CCHHHH--HHHTTHHHHH-HHCSSSCHHHHHHHHHHHHHHHHHCGGGCC----------CCSCHHHHHHHT
T ss_pred HHHhhcc--CCHHHH--HHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHHHHhChhhcC----------chhHHHHHHHHh
Confidence 9999988 346666 5677888887 7 899999999999999999887664211 002355666677
Q ss_pred ccCChhHHHHHHHHHHhcCCCChhHHH----HHHHHHHHHhccC-------------ChHHHHHHHHHHHhccCC-Cchh
Q 003201 234 KEFSEWAQCLVLELVAKYVPLDSNEIF----DIMNLLEDRLQHA-------------NGAVVLSTIKVFLHLTLS-MTDV 295 (840)
Q Consensus 234 ~~~~~W~Qi~iL~lL~~y~p~~~~e~~----~il~~l~~~L~~~-------------n~aVvleaik~il~l~~~-~~~~ 295 (840)
.+.++-.+...+.++...++.+++... .+++.+..++... ++=.....++++-.+.+. .++.
T Consensus 197 ~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~ 276 (621)
T 2vgl_A 197 NDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAV 276 (621)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHH
T ss_pred CCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHH
Confidence 889998888888888887776655322 2334444443221 455666677777777653 2333
Q ss_pred HHHHHHHHHHHHHHhhcC----C----------CchhHHHHHHHHHHHHhhCCCcccc---cccEEEEccCCCHHHHHHH
Q 003201 296 HQQVYERIKAPLLTLVSS----G----------SPEQSYAVLSHLHILVMRAPFIFAS---DYKHFYCQYNEPSYVKKLK 358 (840)
Q Consensus 296 ~~~~l~rl~~~L~~lLss----~----------~~nirY~aL~~l~~l~~~~p~~~~~---~~~~f~c~~~dp~~IK~~k 358 (840)
.. ++...|-.++++ . .+-+-|-+.+.+..+. ..|.+... .+..| + .+.+..+|..+
T Consensus 277 ~~----~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~~~~~~~~~L~~~-L-~~~~~niry~a 349 (621)
T 2vgl_A 277 RG----RLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPNLLVRACNQLGQF-L-QHRETNLRYLA 349 (621)
T ss_dssp HH----HHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH-S-SCSCHHHHHHH
T ss_pred HH----HHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHH-h-cCCCcchHHHH
Confidence 22 222333333311 1 1134444444444332 11111111 11122 2 34567899999
Q ss_pred HHHHHhccCCCC----HHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCchhhHHHHHHH
Q 003201 359 LEMLTAVANESN----TYEIVTELCEYAA-NVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLV 433 (840)
Q Consensus 359 LdiL~~L~n~~N----v~~Iv~EL~~y~~-~~d~~~~~~~i~aI~~la~k~~~~~~~v~~Ll~LL~~~~~~v~~e~v~~i 433 (840)
|+.|..++.... +......+...+. +.|..+++.++..+..++.. .+....+..|++.+......+..+++..+
T Consensus 350 L~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~-~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I 428 (621)
T 2vgl_A 350 LESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR-SNAQQIVAEMLSYLETADYSIREEIVLKV 428 (621)
T ss_dssp HHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh-hhHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999987653 2333444556667 88999999999888887743 13456888888888887778899999999
Q ss_pred HHHHhhCCCcchhHHHHHHhhhcc--cCCchHHHHHHHHHHcCcCCCCCChHHHHHHHHHhhcc
Q 003201 434 KDLLRKYPQWSHDCIAVVGSISSQ--NVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEE 495 (840)
Q Consensus 434 ~~il~~~p~~~~~~~~~l~~l~~~--~i~~~~ak~a~iwilGEy~~~i~~~~~il~~l~~~~~~ 495 (840)
..+..+||.....++..+.+++.. .....++...+.-++.+..+. -.+.+..+++.+.+
T Consensus 429 ~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~---~~~~~~~l~~~l~~ 489 (621)
T 2vgl_A 429 AILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDV---QGYAAKTVFEALQA 489 (621)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSC---HHHHHHHHHHHHTS
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhH---HHHHHHHHHHHHcC
Confidence 999999998777777777666531 122234445556666655332 23455555555443
No 34
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.00 E-value=1.1e-07 Score=113.32 Aligned_cols=436 Identities=14% Similarity=0.091 Sum_probs=265.5
Q ss_pred hhhhhhhccCCCcchHHHHHHHHHHhccCCCchHH-----HHHHHHHhhcCC-CChhhHhHHHHHhhCCChh-hhHH---
Q 003201 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL-----LTINFLQRDCKD-EDPMIRGLALRSLCSLRVA-NLVE--- 134 (840)
Q Consensus 65 F~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~l-----L~iNtl~KDl~~-~Np~ir~LALr~l~~I~~~-~i~e--- 134 (840)
.+..+.++.+.+...|.-+-..+.+++...+.... -++..+.+-|.+ +++.+|..|+++|.++... +...
T Consensus 16 i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~ 95 (644)
T 2z6h_A 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF 95 (644)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH
Confidence 56667788888888888888888888876653211 135566666654 4888998888888765432 2111
Q ss_pred --HHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCc---ccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCc
Q 003201 135 --YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAST 209 (840)
Q Consensus 135 --~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~---~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~ 209 (840)
..++.+.++|.++++.||+.|+.++.++...+++. +.+.+.++.|.++ +.+.++.+...++.+|..++..++.
T Consensus 96 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~La~~~~~- 173 (644)
T 2z6h_A 96 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL-LNKTNVKFLAITTDCLQILAYGNQE- 173 (644)
T ss_dssp TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG-GGCCCHHHHHHHHHHHHHHHTTCHH-
T ss_pred HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHH-HCcCCHHHHHHHHHHHHHHHhcCcH-
Confidence 25778889999999999999999999998775442 2246788999998 6888999998888888888743221
Q ss_pred chHHHHHHHhhccHHHHHHHHHhhccCC-h---hHHHHHHHHHHhcCCCChhHH--HHHHHHHHHHhccCChHHHHHHHH
Q 003201 210 SEEASREREALISKPVIYYLLNRIKEFS-E---WAQCLVLELVAKYVPLDSNEI--FDIMNLLEDRLQHANGAVVLSTIK 283 (840)
Q Consensus 210 ~~~~~~~~~~li~~~~~~~Ll~~l~~~~-~---W~Qi~iL~lL~~y~p~~~~e~--~~il~~l~~~L~~~n~aVvleaik 283 (840)
+. ..+.....+..|+..+...+ + |.-..+|..|.. .+...... ...+..+..++++.+..+...++.
T Consensus 174 ----~~--~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~ 246 (644)
T 2z6h_A 174 ----SK--LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 246 (644)
T ss_dssp ----HH--HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHH
T ss_pred ----HH--HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 11 01111223556666555543 2 444444444442 12211111 124566777788888889999999
Q ss_pred HHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCC----ccccc-ccEEE--Ec-cCCCHHHH
Q 003201 284 VFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF----IFASD-YKHFY--CQ-YNEPSYVK 355 (840)
Q Consensus 284 ~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~----~~~~~-~~~f~--c~-~~dp~~IK 355 (840)
++..+....+.. .....+.+.|+.+|.+.+++++..+...|..|....+. ++... +..+. +. .++...++
T Consensus 247 ~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~ 324 (644)
T 2z6h_A 247 TLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 324 (644)
T ss_dssp HHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHH
Confidence 988876432221 11234677888999999999999999999888765432 11111 11111 11 13336899
Q ss_pred HHHHHHHHhccCCCC----HH------HHHHHHHHhhhcCC-HHHHHHHHHHHHHHHhhcCCh-----HHHHHHHHHHhh
Q 003201 356 KLKLEMLTAVANESN----TY------EIVTELCEYAANVD-IPIARESIRAVGKIALQQYDV-----NAIVDRLLQFLE 419 (840)
Q Consensus 356 ~~kLdiL~~L~n~~N----v~------~Iv~EL~~y~~~~d-~~~~~~~i~aI~~la~k~~~~-----~~~v~~Ll~LL~ 419 (840)
..++..|..|+.... .+ ..+.-|.+.+.+.+ .++++.++.+++.++..-... ...+..|+++|.
T Consensus 325 ~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~ 404 (644)
T 2z6h_A 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV 404 (644)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHh
Confidence 999999999986321 11 24666777777664 689999999999998542221 235677888877
Q ss_pred hcC----------------------chhhHHHHHHHHHHHhhCCCcch-----hHHHHHHhhhcccCCchHHHHHHHHHH
Q 003201 420 MEK----------------------DYVTAEALVLVKDLLRKYPQWSH-----DCIAVVGSISSQNVQEPKAKAALIWML 472 (840)
Q Consensus 420 ~~~----------------------~~v~~e~v~~i~~il~~~p~~~~-----~~~~~l~~l~~~~i~~~~ak~a~iwil 472 (840)
... +.+...++..+..+.+ .++.+. .++..+..++.+ .+++++..++|.+
T Consensus 405 ~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL~~--~~~~v~~~a~~aL 481 (644)
T 2z6h_A 405 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYS--PIENIQRVAAGVL 481 (644)
T ss_dssp HHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHHTTC--SCHHHHHHHHHHH
T ss_pred ccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc-CHHHHHHHHhCCcHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 532 1233333444554432 222111 123344444422 4567888888998
Q ss_pred cCcCCCCCChHHH------HHHHHHhhccCCcHHHHHHHHHHHhHHhhcC
Q 003201 473 GEYSQDMQDAPYI------LESLTENWEEEPSAEVRLHLLTAVMKCFFKR 516 (840)
Q Consensus 473 GEy~~~i~~~~~i------l~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~ 516 (840)
++.+.. ++.... ++.+.+-...++ +.||.....++.++....
T Consensus 482 ~~l~~~-~~~~~~i~~~g~l~~L~~ll~~~~-~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 482 CELAQD-KEAAEAIEAEGATAPLTELLHSRN-EGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp HHHHTS-HHHHHHHHHTTCHHHHHHHTTCSC-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHcC-HHHHHHHHHcCChhHHHHHHcCCC-HHHHHHHHHHHHHHhccC
Confidence 887643 111111 122222233334 556655555555554433
No 35
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.99 E-value=6e-08 Score=117.19 Aligned_cols=395 Identities=13% Similarity=0.090 Sum_probs=256.2
Q ss_pred hccCCCcchHHHHHHHHHHhccCCCchHHH------HHHHHHhhcCCCChhhHhHHHHHhhCCChh-----hhHHHHHHH
Q 003201 71 CSATSDIVLKKMCYLYVGNYAKVNPDLALL------TINFLQRDCKDEDPMIRGLALRSLCSLRVA-----NLVEYLVGP 139 (840)
Q Consensus 71 l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL------~iNtl~KDl~~~Np~ir~LALr~l~~I~~~-----~i~e~l~~~ 139 (840)
.+..++...|-.+.-+++.++...+|..-- ++..|.+=++++++.++--|+..++.+... -+.+.-.+.
T Consensus 255 ~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~ 334 (810)
T 3now_A 255 KLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDI 334 (810)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHH
T ss_pred HhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHH
Confidence 456788888888889999999888886442 357788888899999998888877776543 244444588
Q ss_pred HHhccCCCChHHHHHHHHHHHHHHhh---cCC--cccC---CCchHHHHHHHhcCC--ChhHHHHHHHHHHHHHhhccCc
Q 003201 140 LGLGLKDNNSYVRTVAVIGVLKLYHI---SAP--TCID---ADFPPTLKHLMLNDP--DPQVVANCLSALQEIWSLEAST 209 (840)
Q Consensus 140 v~~~L~d~~pyVRK~Aala~~kl~~~---~p~--~~~~---~~~~~~L~~lLL~D~--d~~Vv~~al~~L~eI~~~~~~~ 209 (840)
+..++.+.++.||..|+.++.|+-.. +|. .+.+ ..+++.+.++| .++ |+.|..+|+-+|.++.....
T Consensus 335 L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL-~~~~~d~~v~~~AveaLayLS~~~~-- 411 (810)
T 3now_A 335 LKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFL-IKPGKDKDIRRWAADGLAYLTLDAE-- 411 (810)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHH-HCSSCCSSHHHHHHHHHHHHTTSHH--
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHhCCcH--
Confidence 99999999999999999999999642 232 2211 12356677874 555 89999999999999975321
Q ss_pred chHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCCh-h---------------------------HHH-
Q 003201 210 SEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDS-N---------------------------EIF- 260 (840)
Q Consensus 210 ~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~-~---------------------------e~~- 260 (840)
.+.. .......+..|+..++..++=.|-..+..|.......+ + ...
T Consensus 412 ---vk~~--lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~ 486 (810)
T 3now_A 412 ---CKEK--LIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINK 486 (810)
T ss_dssp ---HHHH--HHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHH
T ss_pred ---HHHH--HHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHH
Confidence 1111 11234567778887777777788888888887764321 0 011
Q ss_pred --------HHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHH-HHHHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 003201 261 --------DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVM 331 (840)
Q Consensus 261 --------~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~-rl~~~L~~lLss~~~nirY~aL~~l~~l~~ 331 (840)
..+..+..+|++.++.|.-+|++++..+... ++....+++ .+.++|+.+|.++++..|-.+...|..|+.
T Consensus 487 r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~ 565 (810)
T 3now_A 487 RITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGI 565 (810)
T ss_dssp HHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhc
Confidence 1356677788999999999999999999753 334344443 367899999999999999999999998875
Q ss_pred h-CCCc-cccc-----ccEE-EEccCC-CHHHHHHHHHHHHhccCC--CCHHHHH-----HHHHHhhhcCCHHHHHHHHH
Q 003201 332 R-APFI-FASD-----YKHF-YCQYNE-PSYVKKLKLEMLTAVANE--SNTYEIV-----TELCEYAANVDIPIARESIR 395 (840)
Q Consensus 332 ~-~p~~-~~~~-----~~~f-~c~~~d-p~~IK~~kLdiL~~L~n~--~Nv~~Iv-----~EL~~y~~~~d~~~~~~~i~ 395 (840)
. .|.. |... +..+ ..+.++ +...+..++..|..|+.. ++...|+ +.|.+++.+.+..+++.+..
T Consensus 566 ~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~ 645 (810)
T 3now_A 566 TINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQ 645 (810)
T ss_dssp HSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHH
T ss_pred CCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHH
Confidence 4 4432 3210 1111 112333 445566788888888764 3444444 35677777777888888888
Q ss_pred HHHHHHhhcCCh------HHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcc------hhHHHHHHhhhcccCCchH
Q 003201 396 AVGKIALQQYDV------NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWS------HDCIAVVGSISSQNVQEPK 463 (840)
Q Consensus 396 aI~~la~k~~~~------~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~------~~~~~~l~~l~~~~i~~~~ 463 (840)
+|+.++..-... ...+..|+.|+......+..++...+..|...+++.. ..++..|..++. -.+++
T Consensus 646 ~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~--s~d~~ 723 (810)
T 3now_A 646 CLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIA--NPSPA 723 (810)
T ss_dssp HHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHT--CSSHH
T ss_pred HHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHC--CCCHH
Confidence 888887421110 1244556666665544555555555555544333211 112233333332 13455
Q ss_pred HHHHHHHHHcCcC
Q 003201 464 AKAALIWMLGEYS 476 (840)
Q Consensus 464 ak~a~iwilGEy~ 476 (840)
.+..++|.++...
T Consensus 724 vq~~A~~aL~NL~ 736 (810)
T 3now_A 724 VQHRGIVIILNMI 736 (810)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555666665543
No 36
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.99 E-value=4.8e-09 Score=111.22 Aligned_cols=253 Identities=13% Similarity=0.011 Sum_probs=174.9
Q ss_pred HHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHH
Q 003201 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRE 216 (840)
Q Consensus 137 ~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~ 216 (840)
.+.+.+.|.|+++.||..|+.++.++- . ++.++.|..+ +.|+|+.|...|+.+|..+...... .
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~--~------~~~~~~L~~~-l~d~~~~vR~~A~~aL~~l~~~~~~-----~-- 88 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG--G------QDAVRLAIEF-CSDKNYIRRDIGAFILGQIKICKKC-----E-- 88 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC--C------HHHHHHHHHH-HTCSSHHHHHHHHHHHHHSCCCTTT-----H--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC--C------chHHHHHHHH-HcCCCHHHHHHHHHHHHHhcccccc-----c--
Confidence 456777889999999999999998875 1 3456778887 6999999999999999887521110 0
Q ss_pred HHhhccHHHHHHHHH-hhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchh
Q 003201 217 REALISKPVIYYLLN-RIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDV 295 (840)
Q Consensus 217 ~~~li~~~~~~~Ll~-~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~ 295 (840)
..++..|.+ .+.+.+++.+...+..|..+...++.....+++.+...+++.++.|...|+..+..+....
T Consensus 89 ------~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~--- 159 (280)
T 1oyz_A 89 ------DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA--- 159 (280)
T ss_dssp ------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C---
T ss_pred ------hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH---
Confidence 111222221 3567889999999999998865444445567788888899999999999999888775421
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCcccccccEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHH
Q 003201 296 HQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIV 375 (840)
Q Consensus 296 ~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv 375 (840)
..++|..++.++++.+|+.++..+..+.. ++ ..++
T Consensus 160 -------~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------------~~---------------------~~~~ 194 (280)
T 1oyz_A 160 -------TIPLLINLLKDPNGDVRNWAAFAININKY-----------------DN---------------------SDIR 194 (280)
T ss_dssp -------CHHHHHHHHTCSSHHHHHHHHHHHHHHTC-----------------CC---------------------HHHH
T ss_pred -------HHHHHHHHHcCCCHHHHHHHHHHHHhhcc-----------------Cc---------------------HHHH
Confidence 34567778888888899998888876521 11 2456
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchhHHHHHHhhh
Q 003201 376 TELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSIS 455 (840)
Q Consensus 376 ~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~~~~l~~l~ 455 (840)
..|...+.+.|..++..++.++|.++. ...+..|++++... .|...++..+..+-. |.. +..+..++
T Consensus 195 ~~L~~~l~d~~~~vR~~A~~aL~~~~~-----~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~--~~~----~~~L~~~l 261 (280)
T 1oyz_A 195 DCFVEMLQDKNEEVRIEAIIGLSYRKD-----KRVLSVLCDELKKN--TVYDDIIEAAGELGD--KTL----LPVLDTML 261 (280)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTTC-----GGGHHHHHHHHTSS--SCCHHHHHHHHHHCC--GGG----HHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCC-----HhhHHHHHHHhcCc--cHHHHHHHHHHhcCc--hhh----hHHHHHHH
Confidence 667778888899999999999999872 24677788888763 377777777776632 332 33444544
Q ss_pred cccCCchHHHHHHHHHHc
Q 003201 456 SQNVQEPKAKAALIWMLG 473 (840)
Q Consensus 456 ~~~i~~~~ak~a~iwilG 473 (840)
. .-.+++.+..++..++
T Consensus 262 ~-~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 262 Y-KFDDNEIITSAIDKLK 278 (280)
T ss_dssp T-TSSCCHHHHHHHHHHT
T ss_pred h-cCCCcHHHHHHHHHhh
Confidence 3 2345555555555543
No 37
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.98 E-value=1.1e-08 Score=103.80 Aligned_cols=186 Identities=19% Similarity=0.170 Sum_probs=143.6
Q ss_pred HHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHH
Q 003201 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (840)
Q Consensus 101 ~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~ 180 (840)
++..|.+-|.|+|+.+|..|++.|+.++.++.++ .+.+.|.|+++.||..|+.++.++-. ++.++.|.
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~----~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~ 87 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVE----PLIKALKDEDAWVRRAAADALGQIGD--------ERAVEPLI 87 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHH----HHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHH----HHHHHHcCCCHHHHHHHHHHHHhhCC--------HHHHHHHH
Confidence 3567778888999999999999999998876554 45667889999999999999988742 34567888
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHH
Q 003201 181 HLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF 260 (840)
Q Consensus 181 ~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~ 260 (840)
.+ +.|+|+.|...|+.+|..+... ..+..|...+.+.+++.+...+..|..+...
T Consensus 88 ~~-l~~~~~~vr~~a~~aL~~~~~~------------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------ 142 (211)
T 3ltm_A 88 KA-LKDEDGWVRQSAAVALGQIGDE------------------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE------ 142 (211)
T ss_dssp HH-TTCSSHHHHHHHHHHHHHHCCG------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------
T ss_pred HH-HcCCCHHHHHHHHHHHHHhCcH------------------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH------
Confidence 87 6999999999999999887421 1245566677889999999999999988532
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhC
Q 003201 261 DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA 333 (840)
Q Consensus 261 ~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~ 333 (840)
..++.+...+++.++.|..+|+..+..+.. ..+...|..++.++++.+|..+...|..+....
T Consensus 143 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 143 RAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 245667778888899999999999888753 124556777888889999999999998776544
No 38
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.96 E-value=6.7e-08 Score=112.45 Aligned_cols=296 Identities=13% Similarity=0.123 Sum_probs=202.1
Q ss_pred HHHHHHhccC-CCChHHHHHHHHHHHHHHhhcCC---cccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcch
Q 003201 136 LVGPLGLGLK-DNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSE 211 (840)
Q Consensus 136 l~~~v~~~L~-d~~pyVRK~Aala~~kl~~~~p~---~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~ 211 (840)
++|.+.++|. +.++.++..|+-|+..+...+++ .+.+.+.++.|..+ +.++|+.|.-.|+.+|..|+..++.
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~L-L~s~~~~v~e~A~~aL~nLa~~~~~--- 195 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISL-LASPHAHISEQAVWALGNIAGAGSA--- 195 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHHTTCHH---
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH-HcCCCHHHHHHHHHHHHHHhccCHH---
Confidence 5677777775 56799999999999999876554 23457888999997 7999999999999999999865432
Q ss_pred HHHHHHHhhccHHHHHHHHHhhccC-----ChhHHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHHhccCChHHHHHH
Q 003201 212 EASREREALISKPVIYYLLNRIKEF-----SEWAQCLVLELVAKYVPL-----DSNEIFDIMNLLEDRLQHANGAVVLST 281 (840)
Q Consensus 212 ~~~~~~~~li~~~~~~~Ll~~l~~~-----~~W~Qi~iL~lL~~y~p~-----~~~e~~~il~~l~~~L~~~n~aVvlea 281 (840)
+++ .++....+..|+..+... ....+..+...+..++.. .......+++.+..+|++.++.|...|
T Consensus 196 --~r~--~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a 271 (529)
T 3tpo_A 196 --FRD--LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 271 (529)
T ss_dssp --HHH--HHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred --HHH--HHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHH
Confidence 221 112222345566655433 223344444455444322 122345678888899999999999999
Q ss_pred HHHHHhccCCCchhHHHHH-HHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCC----ccccc-ccEEE-EccCCCHHH
Q 003201 282 IKVFLHLTLSMTDVHQQVY-ERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF----IFASD-YKHFY-CQYNEPSYV 354 (840)
Q Consensus 282 ik~il~l~~~~~~~~~~~l-~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~----~~~~~-~~~f~-c~~~dp~~I 354 (840)
+.++.++.....+....+. ..+.+.|+.+|.+.++.++..+++.+.-|+...+. ++... +..+. +..+.+..|
T Consensus 272 ~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i 351 (529)
T 3tpo_A 272 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 351 (529)
T ss_dssp HHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHH
T ss_pred HHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHH
Confidence 9999888765443322222 23566788999999999999999999888754432 11111 12221 335667889
Q ss_pred HHHHHHHHHhccCC--CCHHH-----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcC-C-h-----HHHHHHHHHHhhh
Q 003201 355 KKLKLEMLTAVANE--SNTYE-----IVTELCEYAANVDIPIARESIRAVGKIALQQY-D-V-----NAIVDRLLQFLEM 420 (840)
Q Consensus 355 K~~kLdiL~~L~n~--~Nv~~-----Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~-~-~-----~~~v~~Ll~LL~~ 420 (840)
|..+...|..|+.. .+... ++.-|...+.+.+.+++++++.+|+.++..-. + . ..++..|++||..
T Consensus 352 ~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~ 431 (529)
T 3tpo_A 352 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 431 (529)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcC
Confidence 99999999998743 23332 45567788888999999999999999986532 1 1 1257788888887
Q ss_pred cCchhhHHHHHHHHHHHhh
Q 003201 421 EKDYVTAEALVLVKDLLRK 439 (840)
Q Consensus 421 ~~~~v~~e~v~~i~~il~~ 439 (840)
....+..-++..+.+|++.
T Consensus 432 ~d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 432 KDTKIIQVILDAISNIFQA 450 (529)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 7666777677777777653
No 39
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.93 E-value=3.7e-08 Score=98.91 Aligned_cols=184 Identities=18% Similarity=0.173 Sum_probs=143.0
Q ss_pred HHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHH
Q 003201 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (840)
Q Consensus 100 L~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L 179 (840)
-....+.+.|.|+|+.+|..|++.|+.++.++.+ +.+.+.|.|+++.||..|+.++.++-. ++.++.|
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~----~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~~~~~~L 81 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAV----EPLIKALKDEDAWVRRAAADALGQIGD--------ERAVEPL 81 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGH----HHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHH
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCChhHH----HHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHHHHHH
Confidence 4567888999999999999999999999886654 445677789999999999999987632 3456778
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHH
Q 003201 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI 259 (840)
Q Consensus 180 ~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~ 259 (840)
..+ +.|+|+.|...|+.+|..+... ..+..|+..+.+.+++.+...+..|..+.. +
T Consensus 82 ~~~-l~d~~~~vr~~a~~aL~~~~~~------------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~--- 137 (201)
T 3ltj_A 82 IKA-LKDEDGWVRQSAAVALGQIGDE------------------RAVEPLIKALKDEDWFVRIAAAFALGEIGD--E--- 137 (201)
T ss_dssp HHH-TTCSSHHHHHHHHHHHHHHCCG------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--G---
T ss_pred HHH-HcCCCHHHHHHHHHHHHHhCcH------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--H---
Confidence 887 6999999999999999887421 124456666788899999999999998853 2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHH
Q 003201 260 FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILV 330 (840)
Q Consensus 260 ~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~ 330 (840)
..++.+...+++.++.|..+|+..+..+.. ......|..++.++++.+|..+...|..+-
T Consensus 138 -~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 138 -RAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 245667778888888999999998888743 124556777888888999999988887653
No 40
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.92 E-value=2.4e-07 Score=107.40 Aligned_cols=329 Identities=10% Similarity=0.020 Sum_probs=226.3
Q ss_pred hhhhhhhccCCCcchHHHHHHHHHHhc--cCCCchHHH----HHHHHHhhcC-CCChhhHhHHHHHhhCC--ChhhhHHH
Q 003201 65 FGEMVMCSATSDIVLKKMCYLYVGNYA--KVNPDLALL----TINFLQRDCK-DEDPMIRGLALRSLCSL--RVANLVEY 135 (840)
Q Consensus 65 F~~Vi~l~~S~d~~~KkL~YLyl~~~~--~~~~dl~lL----~iNtl~KDl~-~~Np~ir~LALr~l~~I--~~~~i~e~ 135 (840)
..++|+.+.|+|.+.+.-+=-.+..+. +.+|..-.+ ++..|.+=|. +.||.++--|.++|++| ++++-...
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 789999999999888776666665443 345533111 3667777786 45789998888888887 33443332
Q ss_pred -----HHHHHHhccCCCChHHHHHHHHHHHHHHhhcCC---cccCCCchHHHHHHHhcCCCh-----hHHHHHHHHHHHH
Q 003201 136 -----LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDP-----QVVANCLSALQEI 202 (840)
Q Consensus 136 -----l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~---~~~~~~~~~~L~~lLL~D~d~-----~Vv~~al~~L~eI 202 (840)
.++.+.++|.++++.||..|+-|+.++-.-+|+ .+.+.+.++.|..+ +.+.|. .++.++..++..+
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~l-L~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL-LAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH-TCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHH-HHhccchhhhHHHHHHHHHHHHHH
Confidence 478899999999999999999999999765554 33456778888887 566553 4567788888888
Q ss_pred HhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHH-----HHHHHHHHhccCChHH
Q 003201 203 WSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD-----IMNLLEDRLQHANGAV 277 (840)
Q Consensus 203 ~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~-----il~~l~~~L~~~n~aV 277 (840)
+....... .. .....++..|.+.+...++..+......|..+...+.+.... ++..+..+|++.+..|
T Consensus 218 ~~~~~~~~-----~~--~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 290 (510)
T 3ul1_B 218 CRNKNPAP-----PL--DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 290 (510)
T ss_dssp HCCCSSCC-----CH--HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHH
T ss_pred hhcccchh-----HH--HHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhh
Confidence 75332110 00 011234566777778889999999999998887655433322 4577888999999999
Q ss_pred HHHHHHHHHhccCCCchhHHHHHH-HHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCC----cccccc-cE-EEEccCC
Q 003201 278 VLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF----IFASDY-KH-FYCQYNE 350 (840)
Q Consensus 278 vleaik~il~l~~~~~~~~~~~l~-rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~----~~~~~~-~~-f~c~~~d 350 (840)
...|++++..+..........+++ .+.++|..+|+++++++|..+...|..|+...+. ++.... .. +-+..+.
T Consensus 291 ~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~ 370 (510)
T 3ul1_B 291 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA 370 (510)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred hhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC
Confidence 999999998886544333322322 3445678899989999999999999888765442 111111 11 1234566
Q ss_pred CHHHHHHHHHHHHhccCCCCHHH--------HHHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 003201 351 PSYVKKLKLEMLTAVANESNTYE--------IVTELCEYAANVDIPIARESIRAVGKIA 401 (840)
Q Consensus 351 p~~IK~~kLdiL~~L~n~~Nv~~--------Iv~EL~~y~~~~d~~~~~~~i~aI~~la 401 (840)
+..+|..+...|..++...+.+. ++.-|...+...|.+++..++.+|..+.
T Consensus 371 ~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 371 DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 429 (510)
T ss_dssp CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 78899999999998875544432 3556778888889988887777776654
No 41
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.84 E-value=4.4e-06 Score=97.06 Aligned_cols=338 Identities=14% Similarity=0.087 Sum_probs=228.0
Q ss_pred cHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCc-------cchhhhhhhhcc-CCCcchHHHHHHHHHHhcc
Q 003201 21 EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDV-------SAVFGEMVMCSA-TSDIVLKKMCYLYVGNYAK 92 (840)
Q Consensus 21 Ei~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG~Dv-------S~lF~~Vi~l~~-S~d~~~KkL~YLyl~~~~~ 92 (840)
.+.++-+.+.+ ++.+.+.++++++-.+.....+- +.+.+..++++. +++...+.-+--++.+++.
T Consensus 77 ~l~~lv~~l~s-------~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~ 149 (529)
T 3tpo_A 77 SVEDIVKGINS-------NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS 149 (529)
T ss_dssp CHHHHHHHHTS-------SCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC-------CCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHc
Confidence 46666666654 45577777777665555444321 223555677775 4456777777778888887
Q ss_pred CCCchHHH-----HHHHHHhhcCCCChhhHhHHHHHhhCCCh--hhhHHH-----HHHHHHhccCCCC-----hHHHHHH
Q 003201 93 VNPDLALL-----TINFLQRDCKDEDPMIRGLALRSLCSLRV--ANLVEY-----LVGPLGLGLKDNN-----SYVRTVA 155 (840)
Q Consensus 93 ~~~dl~lL-----~iNtl~KDl~~~Np~ir~LALr~l~~I~~--~~i~e~-----l~~~v~~~L~d~~-----pyVRK~A 155 (840)
.+++-... ++..|.+=+.++++.+|-.|+.+|++|.. ++.-.. .++++..+|.+++ ..+.+.|
T Consensus 150 ~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a 229 (529)
T 3tpo_A 150 GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 229 (529)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHH
Confidence 77664322 57788888899999999999999999843 443333 3577888887654 3567888
Q ss_pred HHHHHHHHhhcCCcc---cCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHh
Q 003201 156 VIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNR 232 (840)
Q Consensus 156 ala~~kl~~~~p~~~---~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~ 232 (840)
+.++..+.+-..... ...+.++.|..+ +.+.|+.|..+|+.+|..+...... . ....+...++..|+..
T Consensus 230 ~~~L~nl~~~~~~~~~~~~~~~~lp~L~~L-L~~~~~~v~~~a~~aL~~l~~~~~~-----~--~~~v~~~g~i~~Lv~l 301 (529)
T 3tpo_A 230 TWTLSNLCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTDGPNE-----R--IEMVVKKGVVPQLVKL 301 (529)
T ss_dssp HHHHHHHHCCCTTCCCHHHHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHHHSSCHH-----H--HHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHhcccchhhHHHHhhHHHHHHHH-hcCCcHHHHHHHHHHHHHhhhhhhh-----h--HHHHHhccchHHHHHH
Confidence 888888876432221 113456778886 7999999999999999998753321 1 0111222346677777
Q ss_pred hccCChhHHHHHHHHHHhcCCCChhHHHHH-----HHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHH-HHHHH
Q 003201 233 IKEFSEWAQCLVLELVAKYVPLDSNEIFDI-----MNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAP 306 (840)
Q Consensus 233 l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~i-----l~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~-rl~~~ 306 (840)
+...++-.+...++.|......++.....+ +..+..+|++.+..|..+|+.++.++....++....+.+ .+.++
T Consensus 302 L~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~ 381 (529)
T 3tpo_A 302 LGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPF 381 (529)
T ss_dssp HTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHH
T ss_pred hcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHH
Confidence 888899999999999998877666554444 456778899999999999999999987655443333333 36678
Q ss_pred HHHhhcCCCchhHHHHHHHHHHHHhhCCCcccccccEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcCC
Q 003201 307 LLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVD 386 (840)
Q Consensus 307 L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d 386 (840)
|+.+|.+++.++|.-+...|.-++... ++..++. |++. .++.-|...+...|
T Consensus 382 Lv~lL~~~~~~v~~~A~~aL~nl~~~~----------------~~~~~~~--------l~~~----g~i~~L~~LL~~~d 433 (529)
T 3tpo_A 382 LVGVLSKADFKTQKAAAWAITNYTSGG----------------TVEQIVY--------LVHC----GIIEPLMNLLSAKD 433 (529)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHS----------------CHHHHHH--------HHHT----TCHHHHHHGGGCSC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCC----------------CHHHHHH--------HHHC----cCHHHHHHHhcCCC
Confidence 889999889999988888887766432 1112211 1111 23445566677778
Q ss_pred HHHHHHHHHHHHHHH
Q 003201 387 IPIARESIRAVGKIA 401 (840)
Q Consensus 387 ~~~~~~~i~aI~~la 401 (840)
.+++..+..+|..+.
T Consensus 434 ~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 434 TKIIQVILDAISNIF 448 (529)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888776666665543
No 42
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.83 E-value=2.2e-07 Score=104.63 Aligned_cols=319 Identities=11% Similarity=0.055 Sum_probs=195.6
Q ss_pred hhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhc-CC-cccCCCchHHHHHHHhcCC--ChhHHHHHHHHHHHHHhh
Q 003201 130 ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS-AP-TCIDADFPPTLKHLMLNDP--DPQVVANCLSALQEIWSL 205 (840)
Q Consensus 130 ~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~-p~-~~~~~~~~~~L~~lLL~D~--d~~Vv~~al~~L~eI~~~ 205 (840)
++.-+.+-..+...|.++++.| ++++.++..+.+.. |+ .. +++++.|..+ +.++ |+.+...|+.+|..+.+.
T Consensus 85 ~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w--~~ll~~L~~~-l~~~~~~~~~r~~al~~l~~l~~~ 160 (462)
T 1ibr_B 85 ANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQW--PELIPQLVAN-VTNPNSTEHMKESTLEAIGYICQD 160 (462)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCC--TTHHHHHHHH-HHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccccc--HHHHHHHHHH-hccCCCCHHHHHHHHHHHHHHHHh
Confidence 4555667777788889999999 99999999999874 63 33 6778888887 5777 999999999999999864
Q ss_pred c-cCcchHHHHHHHhhccHHHHHHHHHhhccC--ChhHHHHHHHHHHhcCCCChh------HHHHHHHHHHHHhccCChH
Q 003201 206 E-ASTSEEASREREALISKPVIYYLLNRIKEF--SEWAQCLVLELVAKYVPLDSN------EIFDIMNLLEDRLQHANGA 276 (840)
Q Consensus 206 ~-~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~--~~W~Qi~iL~lL~~y~p~~~~------e~~~il~~l~~~L~~~n~a 276 (840)
- +... ......++..++..+.+. ++=.+...++.+..+...-.+ ....+++.+...+++.+..
T Consensus 161 ~~~~~~--------~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 232 (462)
T 1ibr_B 161 IDPEQL--------QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTR 232 (462)
T ss_dssp SCGGGT--------GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHH
T ss_pred CCchhh--------HhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHH
Confidence 3 2110 011123555666667666 455667778877764322111 1122466666677777788
Q ss_pred HHHHHHHHHHhccCCCchhHHHHHH-HHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCC--cccccccEEEEccCCC--
Q 003201 277 VVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF--IFASDYKHFYCQYNEP-- 351 (840)
Q Consensus 277 Vvleaik~il~l~~~~~~~~~~~l~-rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~--~~~~~~~~f~c~~~dp-- 351 (840)
|...+++++..+....+..-...+. .+.+.+...+.+.++++|..++..+..++..... .+..... ....+
T Consensus 233 vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~ 308 (462)
T 1ibr_B 233 VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAA----EQGRPPE 308 (462)
T ss_dssp HHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTT----CSSSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhccccc----ccCCCcc
Confidence 8888888876654221111001112 3445556667778899999999988887754210 0000000 00000
Q ss_pred ----HHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcC-------CHHHHHHHHHHHHHHHhhcCCh--HHHHHHHHHHh
Q 003201 352 ----SYVKKLKLEMLTAVANESNTYEIVTELCEYAANV-------DIPIARESIRAVGKIALQQYDV--NAIVDRLLQFL 418 (840)
Q Consensus 352 ----~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~-------d~~~~~~~i~aI~~la~k~~~~--~~~v~~Ll~LL 418 (840)
.+++. .+..++.-|..++.+. +...++.+...++.++..+++. ...+..+.+.+
T Consensus 309 ~~~~~~~~~-------------~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l 375 (462)
T 1ibr_B 309 HTSKFYAKG-------------ALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHI 375 (462)
T ss_dssp CCCCCHHHH-------------HHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHT
T ss_pred chhHHHHHH-------------HhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 01110 1244555555555432 3467888899999999888741 22444455555
Q ss_pred hhcCchhhHHHHHHHHHHHhhCC-C----cchhHHHHHHhhhcccCCchHHHHHHHHHHcCcCCCC
Q 003201 419 EMEKDYVTAEALVLVKDLLRKYP-Q----WSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDM 479 (840)
Q Consensus 419 ~~~~~~v~~e~v~~i~~il~~~p-~----~~~~~~~~l~~l~~~~i~~~~ak~a~iwilGEy~~~i 479 (840)
....-.+...++..+..+..... + .-..++..+...+.+ .++.+|.+++|.+|.|+...
T Consensus 376 ~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d--~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD--PSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp TCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHHHHG
T ss_pred cCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhc
Confidence 55445677777777887775432 1 113455555555433 46899999999999998654
No 43
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.82 E-value=6.5e-08 Score=116.90 Aligned_cols=399 Identities=15% Similarity=0.113 Sum_probs=269.4
Q ss_pred CChHHHHHHHHHHHHHHhcCC-Ccc-------chhhhhhhhccCCCcchHHHHHHHHHHhccCCCchHHH----HHHHHH
Q 003201 39 GIDDSKRELFKKVISYMTIGI-DVS-------AVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALL----TINFLQ 106 (840)
Q Consensus 39 ~~~~~kk~~lkKlI~~m~lG~-DvS-------~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL----~iNtl~ 106 (840)
++.+++..++. .+.....|- |+. ...+.++.+++|++...++-++-++...+. +++..-. -+..|.
T Consensus 259 ~~~~~~~~a~~-alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~-~~~~R~~I~~~gv~~L~ 336 (810)
T 3now_A 259 PDMESKVRVTV-AITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASS-KKDKAKALCEQGVDILK 336 (810)
T ss_dssp CCHHHHHHHHH-HHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTT-SHHHHHTTHHHHHHHHH
T ss_pred CChHhHHHHHH-HHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CcHHHHHHHHcCcHHHH
Confidence 44567777775 444444563 321 234566789999999999999999888654 3553222 245555
Q ss_pred hhcCCCChhhHhHHHHHhhCCCh--------hhh----HHHHHHHHHhccCCC--ChHHHHHHHHHHHHHHhhcC---Cc
Q 003201 107 RDCKDEDPMIRGLALRSLCSLRV--------ANL----VEYLVGPLGLGLKDN--NSYVRTVAVIGVLKLYHISA---PT 169 (840)
Q Consensus 107 KDl~~~Np~ir~LALr~l~~I~~--------~~i----~e~l~~~v~~~L~d~--~pyVRK~Aala~~kl~~~~p---~~ 169 (840)
+=+++.|+.+|-.|+-.||++.. +.+ ++.+.+.+.++|.++ ++-||+.|+-|+..+-...+ +.
T Consensus 337 ~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~l 416 (810)
T 3now_A 337 RLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKL 416 (810)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 55678889999999999998752 122 567888899999888 89999999999998865332 23
Q ss_pred ccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCc--------------------c----hHHHHHH-HhhccHH
Q 003201 170 CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAST--------------------S----EEASRER-EALISKP 224 (840)
Q Consensus 170 ~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~--------------------~----~~~~~~~-~~li~~~ 224 (840)
+.+.++++.|..+ +...|+.++..|+.+|..|....... . .+...+| ..++...
T Consensus 417 v~d~g~Ip~LV~L-L~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaG 495 (810)
T 3now_A 417 IEDKASIHALMDL-ARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEG 495 (810)
T ss_dssp HHCHHHHHHHHHH-HHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTT
T ss_pred HHccchHHHHHHH-hCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCc
Confidence 3456788999998 68889999999999999998632100 0 0000000 0112223
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHH-----HHHHHHHHhccCChHHHHHHHHHHHhccCC-CchhH--
Q 003201 225 VIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD-----IMNLLEDRLQHANGAVVLSTIKVFLHLTLS-MTDVH-- 296 (840)
Q Consensus 225 ~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~-----il~~l~~~L~~~n~aVvleaik~il~l~~~-~~~~~-- 296 (840)
.+..|...+...++=.|......|.... .+++.... .+..|..+|++.+..+...|+.++..+..+ .+...
T Consensus 496 aVp~LV~LL~s~s~~vqe~Aa~aL~NLA-~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~ 574 (810)
T 3now_A 496 ITTALCALAKTESHNSQELIARVLNAVC-GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFS 574 (810)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhc
Confidence 4555666667788888999999998886 34443333 356677788888888888999988877532 22221
Q ss_pred -HHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHhhCCC----ccccc-ccEE-EEccCCCHHHHHHHHHHHHhccCC
Q 003201 297 -QQVYERIKAPLLTLVSSGSP-EQSYAVLSHLHILVMRAPF----IFASD-YKHF-YCQYNEPSYVKKLKLEMLTAVANE 368 (840)
Q Consensus 297 -~~~l~rl~~~L~~lLss~~~-nirY~aL~~l~~l~~~~p~----~~~~~-~~~f-~c~~~dp~~IK~~kLdiL~~L~n~ 368 (840)
+.+. .+.+||+.||.+... ..++-++..|.-|+...++ ++... +..+ .+..++...|++.++++|..|+..
T Consensus 575 ~~~~~-~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~ 653 (810)
T 3now_A 575 GQRSL-DVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS 653 (810)
T ss_dssp THHHH-HTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS
T ss_pred chhhh-cHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 1222 367899999985423 4468888888887754322 12211 1212 234456678999999999998864
Q ss_pred CC-HHH------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCC-h------HHHHHHHHHHhhhcCchhhHHHHHHHH
Q 003201 369 SN-TYE------IVTELCEYAANVDIPIARESIRAVGKIALQQYD-V------NAIVDRLLQFLEMEKDYVTAEALVLVK 434 (840)
Q Consensus 369 ~N-v~~------Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~-~------~~~v~~Ll~LL~~~~~~v~~e~v~~i~ 434 (840)
.. ... .+.-|..++.+.|.+.++++..+|+.++...+. . ..++..|++|+..+...+..+++..+.
T Consensus 654 ~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~ 733 (810)
T 3now_A 654 EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIIL 733 (810)
T ss_dssp HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 32 222 445566788888999999999999999874332 1 236678999999887788888888888
Q ss_pred HHHhhCCC
Q 003201 435 DLLRKYPQ 442 (840)
Q Consensus 435 ~il~~~p~ 442 (840)
++....++
T Consensus 734 NL~~~s~e 741 (810)
T 3now_A 734 NMINAGEE 741 (810)
T ss_dssp HHHTTCHH
T ss_pred HHHhCCHH
Confidence 88764443
No 44
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.79 E-value=3.9e-07 Score=93.75 Aligned_cols=232 Identities=17% Similarity=0.119 Sum_probs=171.8
Q ss_pred HHHHHhccCCCChHHHHHHHHHHHHHHhhcCCc---ccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHH
Q 003201 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEA 213 (840)
Q Consensus 137 ~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~---~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~ 213 (840)
++.+.+.|.++++.+|..|+.++..+...+++. +.+.+.++.|..+ +.++|+.|...|+.+|..+...++.
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~----- 77 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKL-LTSTDSEVQKEAARALANIASGPDE----- 77 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTSCHH-----
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHH-HhCCCHHHHHHHHHHHHHHHcCChH-----
Confidence 567888899999999999999999998776632 2345788899997 6999999999999999999764332
Q ss_pred HHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHH-----HHHHHHHHHhccCChHHHHHHHHHHHhc
Q 003201 214 SREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAVVLSTIKVFLHL 288 (840)
Q Consensus 214 ~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~-----~il~~l~~~L~~~n~aVvleaik~il~l 288 (840)
+. ..++....+..|+..+.+.++..+...+..|..+...+++... ..++.+..++++.+..|...|+.++.++
T Consensus 78 ~~--~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l 155 (252)
T 4hxt_A 78 AI--KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 155 (252)
T ss_dssp HH--HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HH--HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 11 1222233577788888888999999999999999866554433 3567788889999999999999999998
Q ss_pred cCCCchhHHHHH-HHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCcccccccEEEEccCCCHHHHHHHHHHHHhccC
Q 003201 289 TLSMTDVHQQVY-ERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVAN 367 (840)
Q Consensus 289 ~~~~~~~~~~~l-~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n 367 (840)
....+.....+. ..+.+.|+.++.+++++++..++..|..++...| . .+. .+. +
T Consensus 156 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-----------------~-~~~----~l~---~ 210 (252)
T 4hxt_A 156 ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPT-----------------S-AIK----AIV---D 210 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH-----------------H-HHH----HHH---H
T ss_pred HcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-----------------H-HHH----HHH---H
Confidence 765443322222 2356778888988888999988888887764322 1 111 111 1
Q ss_pred CCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcC
Q 003201 368 ESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQY 405 (840)
Q Consensus 368 ~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~ 405 (840)
..++..|.+.+.+.|.++++.++.+++.++...+
T Consensus 211 ----~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 211 ----AGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp ----TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred ----CCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 1366777888888899999999999999997654
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.74 E-value=4.6e-07 Score=91.58 Aligned_cols=185 Identities=18% Similarity=0.172 Sum_probs=144.6
Q ss_pred hhhhhhhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhc
Q 003201 64 VFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLG 143 (840)
Q Consensus 64 lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~ 143 (840)
.+..+++++.+++...|..+--.+..+.. ++ ++..|.+-+.|+|+.+|..|+++|+.++.++..+ .+.++
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--~~----~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~----~L~~~ 89 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD--ER----AVEPLIKALKDEDAWVRRAAADALGQIGDERAVE----PLIKA 89 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--GG----GHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHH----HHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC--cc----HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHH----HHHHH
Confidence 36777888889998888888777777653 22 4566677778999999999999999999876654 45667
Q ss_pred cCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccH
Q 003201 144 LKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISK 223 (840)
Q Consensus 144 L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~ 223 (840)
|.|+++.||..|+.++.++-. ++.++.|..+ +.|+|+.|...|+.+|..+...
T Consensus 90 l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~-l~d~~~~vr~~a~~aL~~~~~~------------------ 142 (211)
T 3ltm_A 90 LKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKA-LKDEDWFVRIAAAFALGEIGDE------------------ 142 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHH-TTCSSHHHHHHHHHHHHHHCCG------------------
T ss_pred HcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCH------------------
Confidence 899999999999999998732 3457788887 7999999999999999887421
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCC
Q 003201 224 PVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLS 291 (840)
Q Consensus 224 ~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~ 291 (840)
..+..|+..+.+.+++.+...++.|..+.. ...++.+...+++.++.|..+|+..+..+...
T Consensus 143 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 143 RAVEPLIKALKDEDGWVRQSAADALGEIGG------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 124456666788999999999999999853 34567777788888899999999988877654
No 46
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.71 E-value=1.8e-07 Score=97.04 Aligned_cols=220 Identities=17% Similarity=0.118 Sum_probs=159.0
Q ss_pred HHHHHhhcCCCChhhHhHHHHHhhCCCh--hhh-----HHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCc---cc
Q 003201 102 INFLQRDCKDEDPMIRGLALRSLCSLRV--ANL-----VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CI 171 (840)
Q Consensus 102 iNtl~KDl~~~Np~ir~LALr~l~~I~~--~~i-----~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~---~~ 171 (840)
.+.+.+.|.++|+.+|-.|+++++++-. .+. -...++.+.++|.++++.||..|+.++..+...+++. +.
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4667777778888888777777754322 111 1235678889999999999999999999988655432 23
Q ss_pred CCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 003201 172 DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY 251 (840)
Q Consensus 172 ~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y 251 (840)
+.+.++.|..+ ++++|+.|..+|+.+|..+....+. . ...++....+..|++.+.+.++-.+...+..|..+
T Consensus 94 ~~g~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~-----~--~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 165 (252)
T 4db8_A 94 DAGALPALVQL-LSSPNEQILQEALWALSNIASGGNE-----Q--IQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (252)
T ss_dssp HTTHHHHHHHG-GGCSCHHHHHHHHHHHHHHTTSCHH-----H--HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHH-HcCCCHHHHHHHHHHHHHhhcCCch-----H--HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 45678889887 6899999999999999999764321 0 01122334677888888888888999999999998
Q ss_pred CCCChhHHHH-----HHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHH-HHHHHHHHhhcCCCchhHHHHHHH
Q 003201 252 VPLDSNEIFD-----IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSH 325 (840)
Q Consensus 252 ~p~~~~e~~~-----il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~-rl~~~L~~lLss~~~nirY~aL~~ 325 (840)
...+++.... .++.+..+|++.+..|...|+.++..+....+.....+.+ .+.++|..++.++++++|..+...
T Consensus 166 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~ 245 (252)
T 4db8_A 166 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEA 245 (252)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHH
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHH
Confidence 8766544332 4567888888889999999999999887544443333333 356678888888888888888777
Q ss_pred HHHH
Q 003201 326 LHIL 329 (840)
Q Consensus 326 l~~l 329 (840)
|..|
T Consensus 246 L~~l 249 (252)
T 4db8_A 246 LEKL 249 (252)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 7654
No 47
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.69 E-value=7.3e-07 Score=89.37 Aligned_cols=183 Identities=18% Similarity=0.182 Sum_probs=139.7
Q ss_pred hhhhhhhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhc
Q 003201 64 VFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLG 143 (840)
Q Consensus 64 lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~ 143 (840)
.+..+++++.++|...|...--.+..+.. ++ ++..+.+-+.|+|+.+|..|++.|+.++.++.++ .+.+.
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--~~----~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~----~L~~~ 84 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGD--ER----AVEPLIKALKDEDAWVRRAAADALGQIGDERAVE----PLIKA 84 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCC--GG----GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHH----HHHHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCC--hh----HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHH----HHHHH
Confidence 46778889999999998888888877653 22 3556667777899999999999999998876554 45567
Q ss_pred cCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccH
Q 003201 144 LKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISK 223 (840)
Q Consensus 144 L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~ 223 (840)
|.|+++.||..|+.++.++-. ++..+.|..+ +.|+|+.|...|+.+|..+...
T Consensus 85 l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~-l~d~~~~vr~~a~~aL~~~~~~------------------ 137 (201)
T 3ltj_A 85 LKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKA-LKDEDWFVRIAAAFALGEIGDE------------------ 137 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHH-TTCSSHHHHHHHHHHHHHHTCG------------------
T ss_pred HcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHH-HcCCCHHHHHHHHHHHHHhCCH------------------
Confidence 889999999999999988632 3456778887 6999999999999998887421
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhcc
Q 003201 224 PVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLT 289 (840)
Q Consensus 224 ~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~ 289 (840)
..+..|...+.+.+++.+...++.|..+.. ...++.+...+++.++.|..+|+..+-.+.
T Consensus 138 ~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 138 RAVEPLIKALKDEDGWVRQSAADALGEIGG------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 124456666778899999999999998842 235566777777788888888887776553
No 48
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.69 E-value=1.9e-07 Score=96.80 Aligned_cols=220 Identities=16% Similarity=0.104 Sum_probs=165.7
Q ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHhccCCCchH--H---HHHHHHHhhcCCCChhhHhHHHHHhhCCCh--hhhHH
Q 003201 62 SAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLA--L---LTINFLQRDCKDEDPMIRGLALRSLCSLRV--ANLVE 134 (840)
Q Consensus 62 S~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~--l---L~iNtl~KDl~~~Np~ir~LALr~l~~I~~--~~i~e 134 (840)
.+.|+.+++.+.++|...+.-+--.+..++..+++.. + =++..|.+=+.++++.+|..|+++|+++.. ++..+
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3458899999999999888887777755443333221 1 256788888999999999999999999865 33333
Q ss_pred H-----HHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCc---ccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhc
Q 003201 135 Y-----LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (840)
Q Consensus 135 ~-----l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~---~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~ 206 (840)
. .++.+.++|.++++.||+.|+.++..+....+.. +.+.+.++.|.++ +.+.|+.|..+|+.+|..+...+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL-LSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHG-GGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHH-HhCCCHHHHHHHHHHHHHHHcCC
Confidence 2 6788999999999999999999999997655432 3456788999997 69999999999999999998643
Q ss_pred cCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHH-----HHHHHHHHhccCChHHHHHH
Q 003201 207 ASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD-----IMNLLEDRLQHANGAVVLST 281 (840)
Q Consensus 207 ~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~-----il~~l~~~L~~~n~aVvlea 281 (840)
+.. ...++....+..|++.+.+.++..+...+..|..+...+++.... .++.+..++++.++.|..+|
T Consensus 170 ~~~-------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A 242 (252)
T 4db8_A 170 NEQ-------IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 242 (252)
T ss_dssp HHH-------HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTH
T ss_pred hHH-------HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHH
Confidence 310 111222335678888888889999999999999998666554433 45566777788888888888
Q ss_pred HHHHHhcc
Q 003201 282 IKVFLHLT 289 (840)
Q Consensus 282 ik~il~l~ 289 (840)
+.++..+.
T Consensus 243 ~~~L~~l~ 250 (252)
T 4db8_A 243 QEALEKLQ 250 (252)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHh
Confidence 88877664
No 49
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.50 E-value=3e-06 Score=93.12 Aligned_cols=266 Identities=11% Similarity=0.081 Sum_probs=135.5
Q ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHH
Q 003201 134 EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEA 213 (840)
Q Consensus 134 e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~ 213 (840)
-.++..+.+++.+++...||-..+++-.+-+. |+.+. =..+.+.+= ++|+||.+.++|+.+|+.|.. ++
T Consensus 67 t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i--Lv~Nsl~kD-l~~~N~~iR~lALRtL~~I~~--~~----- 135 (355)
T 3tjz_B 67 TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI--IVTSSLTKD-MTGKEDSYRGPAVRALCQITD--ST----- 135 (355)
T ss_dssp HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG--GGHHHHHHH-HHSSCHHHHHHHHHHHHHHCC--TT-----
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH--HHHHHHHhh-cCCCcHhHHHHHHHHHhcCCC--HH-----
Confidence 36677788888888888888877777544443 44331 123444443 367888888888888888752 22
Q ss_pred HHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCc
Q 003201 214 SREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT 293 (840)
Q Consensus 214 ~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~ 293 (840)
+..++.+.+-+.+.+.+|...-..+=...+..+.+++....+++.+...+...|+.|++.|+.++.++.....
T Consensus 136 -------m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~ 208 (355)
T 3tjz_B 136 -------MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR 208 (355)
T ss_dssp -------THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred -------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch
Confidence 1123455566667777887777666666677777888777888888899999999999999999888865332
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCchhHHHHHH---HHHHHHhhC-CCcccccccEE-EEccCCCHHHHHHHHHHHHhccCC
Q 003201 294 DVHQQVYERIKAPLLTLVSSGSPEQSYAVLS---HLHILVMRA-PFIFASDYKHF-YCQYNEPSYVKKLKLEMLTAVANE 368 (840)
Q Consensus 294 ~~~~~~l~rl~~~L~~lLss~~~nirY~aL~---~l~~l~~~~-p~~~~~~~~~f-~c~~~dp~~IK~~kLdiL~~L~n~ 368 (840)
..+.+++ .-+....---.|.-.. .+..+.... |..-...++.+ -|+.+....|-..+...++.+-+-
T Consensus 209 ----~a~~kLv----~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~ 280 (355)
T 3tjz_B 209 ----LAVSKMI----SKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGC 280 (355)
T ss_dssp ----HHHHHHH----HHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC----
T ss_pred ----HHHHHHH----HHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC
Confidence 1223332 2333221111333333 332333333 32222222322 255566677777777777776541
Q ss_pred CC--HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCh-HHHHHHHHHHhhhcCchh
Q 003201 369 SN--TYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-NAIVDRLLQFLEMEKDYV 425 (840)
Q Consensus 369 ~N--v~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~-~~~v~~Ll~LL~~~~~~v 425 (840)
.. ....+.-|.-++.+.|.+++=-+++.|..++.++|+. ..|-..+.++++.+...+
T Consensus 281 ~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI 340 (355)
T 3tjz_B 281 SAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSI 340 (355)
T ss_dssp -------CCCTHHHHHHSSSSSSHHHHHHCC-----------------------------
T ss_pred CHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhH
Confidence 11 1112334445666677777777777777777777753 445556666666544333
No 50
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.46 E-value=2.6e-06 Score=85.63 Aligned_cols=189 Identities=17% Similarity=0.118 Sum_probs=142.3
Q ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCc---ccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcc
Q 003201 134 EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTS 210 (840)
Q Consensus 134 e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~---~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~ 210 (840)
+...+.+.++|.++++.||..|+.++..+...+++. +.+.+.++.|..+ +.++|+.|...|+.+|..+...++.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~-- 87 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQL-LSSPNEQILQEALWALSNIASGGNE-- 87 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTSCHH--
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCCcH--
Confidence 455678889999999999999999999998665543 2345778889997 6899999999999999999754332
Q ss_pred hHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHH-----HHHHHHHHHhccCChHHHHHHHHHH
Q 003201 211 EEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAVVLSTIKVF 285 (840)
Q Consensus 211 ~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~-----~il~~l~~~L~~~n~aVvleaik~i 285 (840)
. +..++....+..|++.+.+.++-.+...+..|..+...+++... ..++.+..++++.+..|...|+.++
T Consensus 88 ---~--~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL 162 (210)
T 4db6_A 88 ---Q--IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162 (210)
T ss_dssp ---H--HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ---H--HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 11122223467788888888999999999999998876655433 2567788889988999999999999
Q ss_pred HhccCCCchhHHHHHH-HHHHHHHHhhcCCCchhHHHHHHHHHHHH
Q 003201 286 LHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILV 330 (840)
Q Consensus 286 l~l~~~~~~~~~~~l~-rl~~~L~~lLss~~~nirY~aL~~l~~l~ 330 (840)
..+....+.....+.+ ...+.|..++.++++++|..++..|..|+
T Consensus 163 ~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 163 SNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 8887654443333332 35677888999889999999998887764
No 51
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.45 E-value=2e-06 Score=86.46 Aligned_cols=186 Identities=18% Similarity=0.095 Sum_probs=134.1
Q ss_pred CCCccchhhhhhhhccCCCcchHHHHHHHHHHhccCCCchHHH-----HHHHHHhhcCCCChhhHhHHHHHhhCCC--hh
Q 003201 58 GIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALL-----TINFLQRDCKDEDPMIRGLALRSLCSLR--VA 130 (840)
Q Consensus 58 G~DvS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL-----~iNtl~KDl~~~Np~ir~LALr~l~~I~--~~ 130 (840)
|++....++-+++++.++|...+.-+..++.+++..+++.... ++..+.+=+.++|+.+|..|+++|+++. .+
T Consensus 7 ~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 7 HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp ------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred cccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc
Confidence 4445555777788999999999999999999998776665322 4677888889999999999999999985 34
Q ss_pred hhHHH-----HHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCc---ccCCCchHHHHHHHhcCCChhHHHHHHHHHHHH
Q 003201 131 NLVEY-----LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEI 202 (840)
Q Consensus 131 ~i~e~-----l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~---~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI 202 (840)
+..+. .++.+.++|.++++.||+.|+.++..+...+++. +.+.+.++.|.++ +.+.|+.|..+|+.+|..+
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL-LSSPNEQILQEALWALSNI 165 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHH-HcCCCHHHHHHHHHHHHHH
Confidence 43333 4688999999999999999999999998765543 2346788999997 6899999999999999999
Q ss_pred HhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 003201 203 WSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY 251 (840)
Q Consensus 203 ~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y 251 (840)
+...+. .+..+.....+..|++.+.+.++-.+...+..|..+
T Consensus 166 ~~~~~~-------~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 166 ASGGNE-------QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HTSCHH-------HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HcCCcH-------HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 864321 011111222445555555556666666666655544
No 52
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.39 E-value=7e-06 Score=83.41 Aligned_cols=191 Identities=16% Similarity=0.131 Sum_probs=138.1
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhc---
Q 003201 175 FPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY--- 251 (840)
Q Consensus 175 ~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y--- 251 (840)
.+..|..+ |+|.|+.|+.+|+.+|.|+.+.-++.. + .......+..+++.+.+.++=.-++.++++...
T Consensus 34 ~l~~L~~L-L~dkD~~vk~raL~~LeellK~~~~~l------~-~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~ 105 (265)
T 3b2a_A 34 ALFLILEL-AGEDDETTRLRAFVALGEILKRADSDL------R-MMVLERHLDVFINALSQENEKVTIKALRALGYLVKD 105 (265)
T ss_dssp HHHHHHHH-TTSSCHHHHHHHHHHHHHHHHHSCHHH------H-HHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-HhccchHHHHHHHHHHHHHHHhccccc------c-HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC
Confidence 45678887 799999999999999999987643210 0 111223455666667888999998888888876
Q ss_pred CCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 003201 252 VPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVM 331 (840)
Q Consensus 252 ~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~ 331 (840)
.|-+++...++++.+.+.+.+.|.....+++-..-.+..... ..++.+.|.+++.|+++.++-+||+.+..|..
T Consensus 106 vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 106 VPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLED------SKLVRTYINELVVSPDLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp CCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhc
Confidence 466778888899999999998899999999998887744322 14577788899999999999999999999987
Q ss_pred hC--CCcccccccEE-EEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 003201 332 RA--PFIFASDYKHF-YCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELC 379 (840)
Q Consensus 332 ~~--p~~~~~~~~~f-~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~ 379 (840)
+. |+++..=++-+ +...++|.+++.++|++|-.+.+-.=.+.++.++.
T Consensus 180 ~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~ 230 (265)
T 3b2a_A 180 SSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELL 230 (265)
T ss_dssp GCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHH
Confidence 64 44444322211 23455577888888888877776644444444433
No 53
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.39 E-value=2.6e-05 Score=88.92 Aligned_cols=330 Identities=13% Similarity=0.126 Sum_probs=192.9
Q ss_pred HHHHHhccCCCChHHHHHHHHHHHHHHhhcCC---cccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHH
Q 003201 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEA 213 (840)
Q Consensus 137 ~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~---~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~ 213 (840)
++.+.++|.++++.+|..|+.++.++...+++ .+.+.+.++.|..+ |+++|+.+...|+.+|..|...++.
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~l-L~s~~~~~~~~A~~aL~nLa~~~~~----- 77 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDL-LRSPNQNVQQAAAGALRNLVFRSTT----- 77 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHH-TTSSCHHHHHHHHHHHHHHHSSCHH-----
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCCHH-----
Confidence 45667778888999999999999998766654 33457788999997 6899999999999999999864221
Q ss_pred HHHHHhhccHHHHHHHHHhhc-cCChhHHHHHHHHHHhcCCC--ChhH-HHHHHHHHHHHhc--------c--------C
Q 003201 214 SREREALISKPVIYYLLNRIK-EFSEWAQCLVLELVAKYVPL--DSNE-IFDIMNLLEDRLQ--------H--------A 273 (840)
Q Consensus 214 ~~~~~~li~~~~~~~Ll~~l~-~~~~W~Qi~iL~lL~~y~p~--~~~e-~~~il~~l~~~L~--------~--------~ 273 (840)
. +...+....+..|++.+. ..++=.+......|...... .... ....+..+..+|. + .
T Consensus 78 ~--k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 78 N--KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp H--HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred H--HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccc
Confidence 1 111112223556677676 55677777777777665433 2111 1245566666672 1 2
Q ss_pred ChHHHHHHHHHHHhccCCCchhHHHHHH--HHHHHHHHhhcC------CCchhHHHHHHHHHHHHhh----CC-------
Q 003201 274 NGAVVLSTIKVFLHLTLSMTDVHQQVYE--RIKAPLLTLVSS------GSPEQSYAVLSHLHILVMR----AP------- 334 (840)
Q Consensus 274 n~aVvleaik~il~l~~~~~~~~~~~l~--rl~~~L~~lLss------~~~nirY~aL~~l~~l~~~----~p------- 334 (840)
...|+..|+.++.++... ++....+.+ .+.++|+.+|.+ .+..+.=-++..+.-+..+ .|
T Consensus 156 ~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~ 234 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcc
Confidence 456778899999998765 444444442 577888888864 2333332222222222100 00
Q ss_pred -------------Cccccc----------------------ccEE-----------EEccCCCHHHHHHHHHHHHhccCC
Q 003201 335 -------------FIFASD----------------------YKHF-----------YCQYNEPSYVKKLKLEMLTAVANE 368 (840)
Q Consensus 335 -------------~~~~~~----------------------~~~f-----------~c~~~dp~~IK~~kLdiL~~L~n~ 368 (840)
..|... .+.+ .....+...++..+.-.|..||..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~ 314 (457)
T 1xm9_A 235 YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS 314 (457)
T ss_dssp HTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTC
T ss_pred cccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccC
Confidence 001000 0000 001223456777777778777753
Q ss_pred CC-----H-H------HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCh-----HHHHHHHHHHhhhcCc------hh
Q 003201 369 SN-----T-Y------EIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-----NAIVDRLLQFLEMEKD------YV 425 (840)
Q Consensus 369 ~N-----v-~------~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~-----~~~v~~Ll~LL~~~~~------~v 425 (840)
++ + + .++.-|.+.+.+.|.+++++++.+|+.++.. +.. ..++..|+++|..+.. .+
T Consensus 315 ~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~-~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v 393 (457)
T 1xm9_A 315 KGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDI 393 (457)
T ss_dssp SSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHH
T ss_pred cCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC-HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHH
Confidence 31 1 1 1234566777777888888888888888753 221 3466777777776432 24
Q ss_pred hHHHHHHHHHHHhhCCCcch-----hHHHHHHhhhcccCCchHHHHHHHHHHcCcCC
Q 003201 426 TAEALVLVKDLLRKYPQWSH-----DCIAVVGSISSQNVQEPKAKAALIWMLGEYSQ 477 (840)
Q Consensus 426 ~~e~v~~i~~il~~~p~~~~-----~~~~~l~~l~~~~i~~~~ak~a~iwilGEy~~ 477 (840)
...++..+.+|+...++... .++..+..+.... ..++++..+.|+|..|..
T Consensus 394 ~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~-~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 394 LSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS-ASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCC-CcHHHHHHHHHHHHHHHc
Confidence 44455556677766665322 1233344443221 245677777888887754
No 54
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.27 E-value=0.00046 Score=85.88 Aligned_cols=351 Identities=11% Similarity=0.109 Sum_probs=176.3
Q ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHHhh-cCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCc--
Q 003201 133 VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAST-- 209 (840)
Q Consensus 133 ~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~-~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~-- 209 (840)
-+.+-..+..++.+.++.||++++.++.++.+. +|+.- +++++.|..+ +..+|+..+-.++.+|.+|++.....
T Consensus 83 k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~W--p~ll~~L~~~-l~s~~~~~~~~aL~~l~~i~~~~~~~~~ 159 (960)
T 1wa5_C 83 VELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW--PTLLSDLASR-LSNDDMVTNKGVLTVAHSIFKRWRPLFR 159 (960)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC--TTHHHHHHTT-CCSSCTTHHHHHHHHHHHHHGGGTTSCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccch--hHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444555556699999999999999976 56544 5666777776 57788888889999999997632110
Q ss_pred chHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCC-hh--HHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 003201 210 SEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLD-SN--EIFDIMNLLEDRLQHANGAVVLSTIKVFL 286 (840)
Q Consensus 210 ~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~-~~--e~~~il~~l~~~L~~~n~aVvleaik~il 286 (840)
..+... -+.++++.. ..+..+ ++..+..+...+ .. .....+ .++..++|++.
T Consensus 160 ~~~~~~---------~l~~~l~~~--~~~ll~--~~~~~~~~l~~~~~~~~~~~~~~------------~~~~~~~k~~~ 214 (960)
T 1wa5_C 160 SDELFL---------EIKLVLDVF--TAPFLN--LLKTVDEQITANENNKASLNILF------------DVLLVLIKLYY 214 (960)
T ss_dssp CHHHHH---------HHHHHHHHH--HHHHHH--HHHHHHHHTTCCC--CHHHHHHH------------HHHHHHHHHHH
T ss_pred ChHHHH---------HHHHHHHHH--HHHHHH--HHHHHHHHHHhcCCCHHHHHHHH------------HHHHHHHHHHH
Confidence 000000 011111100 000000 011110111110 00 000000 12222344443
Q ss_pred hccC-CCchhHHHHHHHHHHHHHHhhcCC------C---c------hhHHHHHHHHHHHHhhCCCcccccccEEE--E--
Q 003201 287 HLTL-SMTDVHQQVYERIKAPLLTLVSSG------S---P------EQSYAVLSHLHILVMRAPFIFASDYKHFY--C-- 346 (840)
Q Consensus 287 ~l~~-~~~~~~~~~l~rl~~~L~~lLss~------~---~------nirY~aL~~l~~l~~~~p~~~~~~~~~f~--c-- 346 (840)
.+.. ..+......+....+.+..+|... + . .+|--+++.+..+..++|+.|.+|+..|+ +
T Consensus 215 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~ 294 (960)
T 1wa5_C 215 DFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWN 294 (960)
T ss_dssp HHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3321 112211112222333334444321 1 1 24555677788888888777766554331 1
Q ss_pred ------ccCCCHHHHHHHHHHHHhccCCCCHH------HHHHHHH-----Hhhh----c-----CC--------------
Q 003201 347 ------QYNEPSYVKKLKLEMLTAVANESNTY------EIVTELC-----EYAA----N-----VD-------------- 386 (840)
Q Consensus 347 ------~~~dp~~IK~~kLdiL~~L~n~~Nv~------~Iv~EL~-----~y~~----~-----~d-------------- 386 (840)
....+..+...+++.+..++...... ..+.+|. .++. + .|
T Consensus 295 ~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~ 374 (960)
T 1wa5_C 295 LLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDT 374 (960)
T ss_dssp HHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC---
T ss_pred HHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccc
Confidence 11344678999999998887543211 2333333 2321 1 11
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHHHHHH----hhh-----cCc-hhhHHHHHHHHHHHhhC--CC--cch-----hH
Q 003201 387 IPIARESIRAVGKIALQQYDVNAIVDRLLQF----LEM-----EKD-YVTAEALVLVKDLLRKY--PQ--WSH-----DC 447 (840)
Q Consensus 387 ~~~~~~~i~aI~~la~k~~~~~~~v~~Ll~L----L~~-----~~~-~v~~e~v~~i~~il~~~--p~--~~~-----~~ 447 (840)
.+.|+.+...+..++..+++ .++..++.+ +.. ..+ ...+-++..+..|..+- ++ ... ..
T Consensus 375 ~s~R~aa~~~L~~l~~~~~~--~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l 452 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNEV--LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred cCcHHHHHHHHHHHHHHcch--hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccH
Confidence 13556677778888887762 344444443 331 112 22333444455554321 11 000 12
Q ss_pred HHH-----HHhhhcccCCchHHHHHHHHHHcCcCCCCCC--hHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhh
Q 003201 448 IAV-----VGSISSQNVQEPKAKAALIWMLGEYSQDMQD--APYILESLTENWEEEPSAEVRLHLLTAVMKCFF 514 (840)
Q Consensus 448 ~~~-----l~~l~~~~i~~~~ak~a~iwilGEy~~~i~~--~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~ 514 (840)
... +..+....-..|.+|.+++|.+|.|++.+.. ...++..+++.+.+.+ +.||.....|+..+..
T Consensus 453 ~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~-~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDE-YVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHh
Confidence 122 2222111112788899999999999988741 3345666777777666 9999999999998764
No 55
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.17 E-value=3.4e-05 Score=79.83 Aligned_cols=197 Identities=13% Similarity=0.056 Sum_probs=144.1
Q ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccC--CCchHHHHHHHh-cCCChhHHHHHHHHHHHHHhhccCcch
Q 003201 135 YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCID--ADFPPTLKHLML-NDPDPQVVANCLSALQEIWSLEASTSE 211 (840)
Q Consensus 135 ~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~--~~~~~~L~~lLL-~D~d~~Vv~~al~~L~eI~~~~~~~~~ 211 (840)
.+-+.+.+.+.|+++.+|+.|+.++.++....|+.... .++.+.|..+ + +|+|+.|+..|+.++..++..-+...
T Consensus 15 ~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~-l~kd~~~~V~~~a~~~l~~la~~l~~~~- 92 (242)
T 2qk2_A 15 KMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKV-ITKDSNVVLVAMAGKCLALLAKGLAKRF- 92 (242)
T ss_dssp GSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHH-HHHCSCHHHHHHHHHHHHHHHHHHGGGG-
T ss_pred cCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHhhhH-
Confidence 33445677788999999999999999999887764311 2345666676 6 49999999999999999985322111
Q ss_pred HHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhc-cC
Q 003201 212 EASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHL-TL 290 (840)
Q Consensus 212 ~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l-~~ 290 (840)
......++..|+..+.+.++-.+......|..+....+ ...+++.+...|++.|+.|-.+++..+..+ ..
T Consensus 93 -------~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~ 163 (242)
T 2qk2_A 93 -------SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTR 163 (242)
T ss_dssp -------HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 11223467788888999888887777777776654322 457889999999999999999999988774 32
Q ss_pred CCch-hHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCC-ccccccc
Q 003201 291 SMTD-VHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF-IFASDYK 342 (840)
Q Consensus 291 ~~~~-~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~-~~~~~~~ 342 (840)
..++ .....+..+.+.|..+|+++.+++|-.+...+..+....+. .|.+++.
T Consensus 164 ~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 164 TQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred cCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 2222 22345677888999999999999999999999999876554 3555544
No 56
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.15 E-value=0.00025 Score=82.89 Aligned_cols=186 Identities=14% Similarity=0.099 Sum_probs=113.2
Q ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHhhcCC---cccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhh-ccCcch
Q 003201 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL-EASTSE 211 (840)
Q Consensus 136 l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~---~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~-~~~~~~ 211 (840)
-++.+.++|.+.++-++..|+.++.++...+++ .+.+.+.++.|..+ |...|+.|..+|+.+|..|+.. +..
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~L-L~s~~~~vq~~Aa~AL~nLa~~~~~~--- 124 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGL-LDHPKKEVHLGACGALKNISFGRDQD--- 124 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHG-GGCSSHHHHHHHHHHHHHHTSSSCHH---
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHH-HCCCCHHHHHHHHHHHHHHHccCCHH---
Confidence 356677788889999999999999888764443 23456778999997 6899999999999999999753 121
Q ss_pred HHHHHHHhhccHHHHHHHHHhhcc-CChhHHHHHHHHHHhcCCCChhHHHHH----HHHHHHHh----------------
Q 003201 212 EASREREALISKPVIYYLLNRIKE-FSEWAQCLVLELVAKYVPLDSNEIFDI----MNLLEDRL---------------- 270 (840)
Q Consensus 212 ~~~~~~~~li~~~~~~~Ll~~l~~-~~~W~Qi~iL~lL~~y~p~~~~e~~~i----l~~l~~~L---------------- 270 (840)
++ ...+....+..|+..|.. .++-.|-.....|..+.-. ++-...| +..|..++
T Consensus 125 --nk--~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k 199 (584)
T 3l6x_A 125 --NK--IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCK 199 (584)
T ss_dssp --HH--HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHHHTHHHHHHHTHHHHHCCC--------
T ss_pred --HH--HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHhccHHHHHHHHhccccccccccccccc
Confidence 11 111222245566666654 3455566655556555432 2222222 33333333
Q ss_pred -cc-CChHHHHHHHHHHHhccCCCchhHHHHHH--HHHHHHHHhhcC------CCchhHHHHHHHHHHHH
Q 003201 271 -QH-ANGAVVLSTIKVFLHLTLSMTDVHQQVYE--RIKAPLLTLVSS------GSPEQSYAVLSHLHILV 330 (840)
Q Consensus 271 -~~-~n~aVvleaik~il~l~~~~~~~~~~~l~--rl~~~L~~lLss------~~~nirY~aL~~l~~l~ 330 (840)
++ ....|+..|+.++..+....++..+.+.+ .++.+|+.+|.+ .+..++--++..|.-|.
T Consensus 200 ~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs 269 (584)
T 3l6x_A 200 PRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269 (584)
T ss_dssp --CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhh
Confidence 11 23578889999999997655443333332 355678888753 23344444555554444
No 57
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.06 E-value=0.0012 Score=74.99 Aligned_cols=302 Identities=12% Similarity=0.030 Sum_probs=198.0
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCc-------cchhhhhhhhccCCCcchHHHHHHHHHHhccCC
Q 003201 22 VSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDV-------SAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVN 94 (840)
Q Consensus 22 i~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG~Dv-------S~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~ 94 (840)
+..+-..|++ ++.+.+..+.. .+..+..+.+- ....+.+++++.+++...++-+--++.+++..+
T Consensus 4 l~~lv~~L~s-------~~~~~q~~A~~-~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 75 (457)
T 1xm9_A 4 IPKAVQYLSS-------QDEKYQAIGAY-YIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS 75 (457)
T ss_dssp HHHHHHHHHS-------SCTHHHHHHHH-HHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHCC-------CCHHHHHHHHH-HHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 4555555654 33355666664 45555555432 224667789999999999999999999998876
Q ss_pred CchHHHH-----HHHHHhhcC-CCChhhHhHHHHHhhCCCh-----hhhHHHHHHHHHhccC--------C--------C
Q 003201 95 PDLALLT-----INFLQRDCK-DEDPMIRGLALRSLCSLRV-----ANLVEYLVGPLGLGLK--------D--------N 147 (840)
Q Consensus 95 ~dl~lL~-----iNtl~KDl~-~~Np~ir~LALr~l~~I~~-----~~i~e~l~~~v~~~L~--------d--------~ 147 (840)
++.-..+ +..|.+=|. ++++.++-.|..+|++|.. ..+++-.++++.++|. + .
T Consensus 76 ~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 76 TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccc
Confidence 6654433 556777777 7899999888888777633 2255577888888882 2 3
Q ss_pred ChHHHHHHHHHHHHHHhhcCC---cccCC-CchHHHHHHHhcC------CChhHHHHHHHHHHHHHhhc----cCcc---
Q 003201 148 NSYVRTVAVIGVLKLYHISAP---TCIDA-DFPPTLKHLMLND------PDPQVVANCLSALQEIWSLE----ASTS--- 210 (840)
Q Consensus 148 ~pyVRK~Aala~~kl~~~~p~---~~~~~-~~~~~L~~lLL~D------~d~~Vv~~al~~L~eI~~~~----~~~~--- 210 (840)
++.|++.|+-++..+..- |+ .+.+. +.++.|..+| .+ .|..++-+|+.+|..+...- +...
T Consensus 156 ~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~ 233 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYV-QNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL 233 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHH-HHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHH
T ss_pred cHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHH-HhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhc
Confidence 567888999999988764 43 23343 7888888874 43 56667778877776653110 0000
Q ss_pred ------------hHHH------------------------HHHHhhccHHHHHHHHHhhccC-ChhHHHHHHHHHHhcCC
Q 003201 211 ------------EEAS------------------------REREALISKPVIYYLLNRIKEF-SEWAQCLVLELVAKYVP 253 (840)
Q Consensus 211 ------------~~~~------------------------~~~~~li~~~~~~~Ll~~l~~~-~~W~Qi~iL~lL~~y~p 253 (840)
...| .....+++...+..|+..+... ++-.+......|..++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~ 313 (457)
T 1xm9_A 234 EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTA 313 (457)
T ss_dssp HHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhcc
Confidence 0000 0111234555666777666543 57777777888888775
Q ss_pred CChh---HH-------HHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCc------h
Q 003201 254 LDSN---EI-------FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSP------E 317 (840)
Q Consensus 254 ~~~~---e~-------~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~------n 317 (840)
.+.. +. ...++.+..+|++.+..|..+|+.++-++... +..+..+-....++|+.+|.++++ +
T Consensus 314 ~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~-~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~ 392 (457)
T 1xm9_A 314 SKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-PLLHRVMGNQVFPEVTRLLTSHTGNTSNSED 392 (457)
T ss_dssp CSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHH
T ss_pred CcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC-HHHHHHHHHhhhHHHHHhccCCCCCCCCcHH
Confidence 4422 11 13457788899999999999999999988764 344433445677899999987654 5
Q ss_pred hHHHHHHHHHHHHhhCC
Q 003201 318 QSYAVLSHLHILVMRAP 334 (840)
Q Consensus 318 irY~aL~~l~~l~~~~p 334 (840)
+...++..+..|+...+
T Consensus 393 v~~~~l~~l~ni~~~~~ 409 (457)
T 1xm9_A 393 ILSSACYTVRNLMASQP 409 (457)
T ss_dssp HHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcCH
Confidence 77788888888876554
No 58
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.06 E-value=2.5e-06 Score=79.90 Aligned_cols=86 Identities=19% Similarity=0.141 Sum_probs=40.1
Q ss_pred HHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHH
Q 003201 103 NFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHL 182 (840)
Q Consensus 103 Ntl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~l 182 (840)
+.+.+-|+|+|+.+|..|++.|+.++.+. .+.+.++|.|+++.||..|+.++.++-. +..++.|..+
T Consensus 15 ~~l~~~L~~~~~~vR~~A~~~L~~~~~~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~a~~~L~~~ 81 (131)
T 1te4_A 15 VPRGSHMADENKWVRRDVSTALSRMGDEA-----FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEPLIKL 81 (131)
T ss_dssp ------CCSSCCCSSSSCCSSTTSCSSTT-----HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCchH-----HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHH
Confidence 34444555555555555555555555443 1444455555555555555555544321 1223444444
Q ss_pred HhcCCChhHHHHHHHHHHHH
Q 003201 183 MLNDPDPQVVANCLSALQEI 202 (840)
Q Consensus 183 LL~D~d~~Vv~~al~~L~eI 202 (840)
++|+|+.|...|+.+|..+
T Consensus 82 -L~d~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 82 -LEDDSGFVRSGAARSLEQI 100 (131)
T ss_dssp -HHHCCTHHHHHHHHHHHHH
T ss_pred -HcCCCHHHHHHHHHHHHHh
Confidence 3555555555555555544
No 59
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.05 E-value=1.5e-06 Score=81.53 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=86.0
Q ss_pred hhhhhhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhcc
Q 003201 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGL 144 (840)
Q Consensus 65 F~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L 144 (840)
...++.++.+++...|..+.-.+..+... . +..|.+-+.|+|+.+|..|++.|+.++.++. .+.+.++|
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a----~~~L~~~L 82 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMGDE--A-----FEPLLESLSNEDWRIRGAAAWIIGNFQDERA----VEPLIKLL 82 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCSST--T-----HHHHHHGGGCSCHHHHHHHHHHHGGGCSHHH----HHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCch--H-----HHHHHHHHcCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHH
Confidence 44556777788877776665555544322 1 4777888899999999999999999998664 45566677
Q ss_pred CCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHH
Q 003201 145 KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQE 201 (840)
Q Consensus 145 ~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~e 201 (840)
.|+++.||+.|+.++.++-. ++.++.|..+ ++|+|+.|...|+.+|.+
T Consensus 83 ~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~-l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 83 EDDSGFVRSGAARSLEQIGG--------ERVRAAMEKL-AETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHH-TTSCCTHHHHHHHHHGGG
T ss_pred cCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHH-HhCCCHHHHHHHHHHHHh
Confidence 89999999999999998752 3456778887 699999999999887754
No 60
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.95 E-value=0.00018 Score=79.24 Aligned_cols=219 Identities=14% Similarity=0.080 Sum_probs=147.4
Q ss_pred CChhhHhHHHHHhhCCCh-----hhhH---HHHHHHHHhccCCCChHHHHHHHHHHHHHHhh-cC---CcccCCCchHHH
Q 003201 112 EDPMIRGLALRSLCSLRV-----ANLV---EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SA---PTCIDADFPPTL 179 (840)
Q Consensus 112 ~Np~ir~LALr~l~~I~~-----~~i~---e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~-~p---~~~~~~~~~~~L 179 (840)
.|+.++-.|..+|.+|.. +..+ .-.++.+.++|.++++.||..|+-++..+-.. ++ +.+.+.+.++.|
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 457777777666666531 2222 24589999999999999999999999888653 22 334456788888
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCC--hh--HHH---HHHHHHHhcC
Q 003201 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFS--EW--AQC---LVLELVAKYV 252 (840)
Q Consensus 180 ~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~--~W--~Qi---~iL~lL~~y~ 252 (840)
.++|+...++.+..+|+.+|..+.....+ ..... ......+..|++.+...+ +| .+. -+|+-|..+.
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~----nk~~i--~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~ 249 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTE----NKADI--CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 249 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHH----HHHHH--HHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChh----hhHHH--HHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc
Confidence 88756778899999999999998753221 01111 112234556666665433 34 333 3444444432
Q ss_pred CCChhHHHH-----HHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHH-HHHHHHHHhhcCCCchhHHHHHHHH
Q 003201 253 PLDSNEIFD-----IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHL 326 (840)
Q Consensus 253 p~~~~e~~~-----il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~-rl~~~L~~lLss~~~nirY~aL~~l 326 (840)
..+++.... .+..+..+|++.+..+.-+|+.++..+....++....+.+ .+.++|+.+|.++++++|-.+...|
T Consensus 250 a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL 329 (354)
T 3nmw_A 250 ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 329 (354)
T ss_dssp TTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 233333322 4677788899988899999999999997544443333332 3578899999999999999999999
Q ss_pred HHHHhhCCCc
Q 003201 327 HILVMRAPFI 336 (840)
Q Consensus 327 ~~l~~~~p~~ 336 (840)
..|+...|..
T Consensus 330 ~nL~~~~~~~ 339 (354)
T 3nmw_A 330 RNLMANRPAK 339 (354)
T ss_dssp HHHHTTCCGG
T ss_pred HHHHcCCHHH
Confidence 9999887753
No 61
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.92 E-value=0.0057 Score=74.56 Aligned_cols=282 Identities=12% Similarity=0.052 Sum_probs=172.4
Q ss_pred HHHHHhhcC---CCChhhHhHHHHHhhCCChh---hhHHHHHHHHHhccCCCC--------hHHHHHHHHHHHHHHhhcC
Q 003201 102 INFLQRDCK---DEDPMIRGLALRSLCSLRVA---NLVEYLVGPLGLGLKDNN--------SYVRTVAVIGVLKLYHISA 167 (840)
Q Consensus 102 iNtl~KDl~---~~Np~ir~LALr~l~~I~~~---~i~e~l~~~v~~~L~d~~--------pyVRK~Aala~~kl~~~~p 167 (840)
...|.+=+- +.++++|+-|+-.+|-|... +..+.+.+.+. +++ +.||.-|++|+.-+|-=..
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~----~~~~~~~~~~~~~ir~gAaLGLGla~~GS~ 469 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIV----ENSGTSGDEDVDVLLHGASLGIGLAAMGSA 469 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHH----HHSSCCSCHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc----CccccccccccHHHHHHHHHHHHHHhcCCC
Confidence 444555554 67899999999999877433 34444444443 333 8999999999998875322
Q ss_pred CcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhc--cCChhHHHHHH
Q 003201 168 PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK--EFSEWAQCLVL 245 (840)
Q Consensus 168 ~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~--~~~~W~Qi~iL 245 (840)
+++..+.|..+ +.|.+..+...|..+|--|.-..+ +..++..|+..+. +-+.|.....+
T Consensus 470 ----~eev~e~L~~~-L~dd~~~~~~~AalALGli~vGTg--------------n~~ai~~LL~~~~e~~~e~vrR~aal 530 (963)
T 4ady_A 470 ----NIEVYEALKEV-LYNDSATSGEAAALGMGLCMLGTG--------------KPEAIHDMFTYSQETQHGNITRGLAV 530 (963)
T ss_dssp ----CHHHHHHHHHH-HHTCCHHHHHHHHHHHHHHHTTCC--------------CHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred ----CHHHHHHHHHH-HhcCCHHHHHHHHHHHhhhhcccC--------------CHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 23567788887 566666444344444444421111 1224455555332 23455554333
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHH-hc-cCCCchhHHHHHHHHHHHHHH-hhcCCCchhHHHH
Q 003201 246 ELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFL-HL-TLSMTDVHQQVYERIKAPLLT-LVSSGSPEQSYAV 322 (840)
Q Consensus 246 ~lL~~y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il-~l-~~~~~~~~~~~l~rl~~~L~~-lLss~~~nirY~a 322 (840)
.|......+++.+..+++.+.. +.++-|-+.++-++- .+ ...+.. .+..|+. +.++.+.++|-.|
T Consensus 531 -gLGll~~g~~e~~~~li~~L~~---~~dp~vRygaa~alglAyaGTGn~~--------aIq~LL~~~~~d~~d~VRraA 598 (963)
T 4ady_A 531 -GLALINYGRQELADDLITKMLA---SDESLLRYGGAFTIALAYAGTGNNS--------AVKRLLHVAVSDSNDDVRRAA 598 (963)
T ss_dssp -HHHHHTTTCGGGGHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTSCCHH--------HHHHHHHHHHHCSCHHHHHHH
T ss_pred -HHHhhhCCChHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHhcCCCCHH--------HHHHHHHHhccCCcHHHHHHH
Confidence 3443345566666666665542 466777777765543 22 222211 2222333 3456677899999
Q ss_pred HHHHHHHHhhCCCcccccccEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 003201 323 LSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIAL 402 (840)
Q Consensus 323 L~~l~~l~~~~p~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~ 402 (840)
.-.|..|....|+.+...+..+ . .+.+..||+-+---|-.++..+.-..+++-|..+..+.|..+++.++.++|.+..
T Consensus 599 ViaLGlI~~g~~e~v~rlv~~L-~-~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 599 VIALGFVLLRDYTTVPRIVQLL-S-KSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp HHHHHHHTSSSCSSHHHHTTTG-G-GCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred HHHHHhhccCCHHHHHHHHHHH-H-hcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 9999988877776433332211 1 2345789988887777777666567888888888889999999999999999997
Q ss_pred hcCC-----hHHHHHHHHHHhhh
Q 003201 403 QQYD-----VNAIVDRLLQFLEM 420 (840)
Q Consensus 403 k~~~-----~~~~v~~Ll~LL~~ 420 (840)
...+ +......|.+.+..
T Consensus 677 gtnna~~~rva~~l~~L~~~~~d 699 (963)
T 4ady_A 677 QQTEKLNPQVADINKNFLSVITN 699 (963)
T ss_dssp TCCTTTCTTHHHHHHHHHHHHHC
T ss_pred CCccccchHHHHHHHHHHHHHhc
Confidence 6443 33445555555543
No 62
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.91 E-value=0.00013 Score=76.38 Aligned_cols=210 Identities=16% Similarity=0.168 Sum_probs=142.8
Q ss_pred HHHhccCCCChHHHHHHHHHHHH-HHhhcCCccc-CC---CchHHHHHHHh-cCCChhHHHHHHHHHHHHHhhcc-Ccch
Q 003201 139 PLGLGLKDNNSYVRTVAVIGVLK-LYHISAPTCI-DA---DFPPTLKHLML-NDPDPQVVANCLSALQEIWSLEA-STSE 211 (840)
Q Consensus 139 ~v~~~L~d~~pyVRK~Aala~~k-l~~~~p~~~~-~~---~~~~~L~~lLL-~D~d~~Vv~~al~~L~eI~~~~~-~~~~ 211 (840)
.....+.++++.-||.|+.++.. +..-+|+... .. ++++.|... + +|.|+.|+..|+.++..++..-. ..+.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~-l~~D~n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHI-IQKDANIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHH-HHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHH-hccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence 34556689999999999999999 8876777552 22 345666676 5 79999999999999999985322 1110
Q ss_pred HHHHHHHhhccHHHHHHHHHhhccCChhHHHH---HHHHHHhcC-CCChh-HHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 003201 212 EASREREALISKPVIYYLLNRIKEFSEWAQCL---VLELVAKYV-PLDSN-EIFDIMNLLEDRLQHANGAVVLSTIKVFL 286 (840)
Q Consensus 212 ~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~---iL~lL~~y~-p~~~~-e~~~il~~l~~~L~~~n~aVvleaik~il 286 (840)
. -....++..++.++++..+=.+-. .|+.+.... |.... ....+++.+...|+|.|+.|-.++++++.
T Consensus 99 ~-------~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~ 171 (249)
T 2qk1_A 99 K-------DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFN 171 (249)
T ss_dssp H-------HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred H-------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 0 112235667888888866544333 333333333 22111 14578899999999999999999998887
Q ss_pred hccCCCc---hhHHHHH-HHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCC-cccccccEEEEccCCCHHHHHHHHHH
Q 003201 287 HLTLSMT---DVHQQVY-ERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF-IFASDYKHFYCQYNEPSYVKKLKLEM 361 (840)
Q Consensus 287 ~l~~~~~---~~~~~~l-~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~-~~~~~~~~f~c~~~dp~~IK~~kLdi 361 (840)
.+....+ ..-...+ ..+.+.|..++.+.++++|=.+...+..+....++ .|.+|+..+ | .+|+.|+.-
T Consensus 172 ~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L-----d--~~k~~ki~~ 244 (249)
T 2qk1_A 172 ASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL-----D--NLKRKKIEE 244 (249)
T ss_dssp HHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS-----C--HHHHHHHHH
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH-----h--HHHHHHHHH
Confidence 6643222 2112355 67888899999999999999999999999877654 466665543 2 377777764
Q ss_pred HH
Q 003201 362 LT 363 (840)
Q Consensus 362 L~ 363 (840)
.+
T Consensus 245 ~~ 246 (249)
T 2qk1_A 245 TV 246 (249)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 63
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.88 E-value=0.015 Score=69.43 Aligned_cols=440 Identities=13% Similarity=0.138 Sum_probs=252.3
Q ss_pred HHhccCCCchHHHHHHHHHhhc--CCCChhhHhHHHHHhhCCCh---hhhHHHHHHHHHhcc----C--CCChHHHHHHH
Q 003201 88 GNYAKVNPDLALLTINFLQRDC--KDEDPMIRGLALRSLCSLRV---ANLVEYLVGPLGLGL----K--DNNSYVRTVAV 156 (840)
Q Consensus 88 ~~~~~~~~dl~lL~iNtl~KDl--~~~Np~ir~LALr~l~~I~~---~~i~e~l~~~v~~~L----~--d~~pyVRK~Aa 156 (840)
..|-...+++ +.|.|++ ...-+.+|+++|=.++.+.. .+.-+.+...+...+ . +.+|++ .++
T Consensus 161 ~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~--~~~ 233 (778)
T 3opb_A 161 NKFKYNFKEV-----RFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDVGNDPLS--IIV 233 (778)
T ss_dssp HHSCCCSTTT-----THHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHH--HHH
T ss_pred HHcCccccch-----hhHHHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCCCCccHH--HHH
Confidence 3444556664 4445554 35567899999888777632 233333333333333 2 456766 566
Q ss_pred HHHHHHHhhcCCcc----cCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHh
Q 003201 157 IGVLKLYHISAPTC----IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNR 232 (840)
Q Consensus 157 la~~kl~~~~p~~~----~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~ 232 (840)
-++.-+|...|+.+ ..+++.+.+.+.+...++..+..+++.+|...|-. +.|++. +.+..+..|...
T Consensus 234 ~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~------~~cR~~---I~~~~~~~L~~~ 304 (778)
T 3opb_A 234 KTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACID------ETMRTY---ITENYLQLLERS 304 (778)
T ss_dssp HHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCS------HHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCC------cHHHHH---HHHhHHHHHHHH
Confidence 66777788888765 46888898888754667777778888888777643 246432 344444444444
Q ss_pred hcc--CChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHH--HHHHHHH
Q 003201 233 IKE--FSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE--RIKAPLL 308 (840)
Q Consensus 233 l~~--~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~--rl~~~L~ 308 (840)
++. ...|.-+.+.++-..-.+ ......++.+.+...|.+......--|+..+-+++.. ++++.++.+ .+...|+
T Consensus 305 l~~~~ir~lAavvL~KL~~~~~~-~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv 382 (778)
T 3opb_A 305 LNVEDVQIYSALVLVKTWSFTKL-TCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILL 382 (778)
T ss_dssp TTSGGGHHHHHHHHHHHTGGGTC-TTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhcCCCC-CcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHH
Confidence 432 223333333333322222 2234566788888888876655577778877777653 445433322 2334467
Q ss_pred HhhcC-CCchhHHHHHHHHHHHHhhCCCcccc--c---ccE------------------------EE-------------
Q 003201 309 TLVSS-GSPEQSYAVLSHLHILVMRAPFIFAS--D---YKH------------------------FY------------- 345 (840)
Q Consensus 309 ~lLss-~~~nirY~aL~~l~~l~~~~p~~~~~--~---~~~------------------------f~------------- 345 (840)
.++.+ .++.+.|-++..+.-+....|..... . ++. |-
T Consensus 383 ~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~L 462 (778)
T 3opb_A 383 TMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFL 462 (778)
T ss_dssp HHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHH
T ss_pred HHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHH
Confidence 77774 67889999999998888765542220 0 000 00
Q ss_pred --EccCCCHHHHHHHHHHHHhccCCC-CHHHH-----HHHHHHhhhcCCHH---HHHHHHHHHHHHHhhc------C--C
Q 003201 346 --CQYNEPSYVKKLKLEMLTAVANES-NTYEI-----VTELCEYAANVDIP---IARESIRAVGKIALQQ------Y--D 406 (840)
Q Consensus 346 --c~~~dp~~IK~~kLdiL~~L~n~~-Nv~~I-----v~EL~~y~~~~d~~---~~~~~i~aI~~la~k~------~--~ 406 (840)
+..++...+|..+..+|..|+... |-..+ ++-|+.++.+.... .+..+..++++|++.- + .
T Consensus 463 v~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~ 542 (778)
T 3opb_A 463 KREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYS 542 (778)
T ss_dssp HHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCc
Confidence 123445667778888888887443 43333 44567777665433 6788888888888532 1 1
Q ss_pred hHHHHHHHHHHhhh--cCch------------hhHHHHHHHHHHHhhCC----Ccchh------HHHHHHhhhcccCCch
Q 003201 407 VNAIVDRLLQFLEM--EKDY------------VTAEALVLVKDLLRKYP----QWSHD------CIAVVGSISSQNVQEP 462 (840)
Q Consensus 407 ~~~~v~~Ll~LL~~--~~~~------------v~~e~v~~i~~il~~~p----~~~~~------~~~~l~~l~~~~i~~~ 462 (840)
....|..|++||.. ..+. -.-+++..+.+|..... +.+.. ++..+.+++.+ +.+
T Consensus 543 ~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s--~n~ 620 (778)
T 3opb_A 543 ALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD--ENV 620 (778)
T ss_dssp STTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC--SSH
T ss_pred cccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC--CCH
Confidence 12467888888872 1110 14577777777765321 22221 23334444322 345
Q ss_pred HHHHHHHHHHcCcCCC-------CC--ChHH---HHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCChhHH------HHH
Q 003201 463 KAKAALIWMLGEYSQD-------MQ--DAPY---ILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQ------KVL 524 (840)
Q Consensus 463 ~ak~a~iwilGEy~~~-------i~--~~~~---il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~~------~~l 524 (840)
.++.+++|++.-.... +- ..+. -+..++.-...++ ..+|.+...|++-+-...|.-++ ..+
T Consensus 621 ~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D-~~~r~AAagALAnLts~~~~ia~~ll~~~~gi 699 (778)
T 3opb_A 621 PLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSD-VESQRAVAAIFANIATTIPLIAKELLTKKELI 699 (778)
T ss_dssp HHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCC-HHHHHHHHHHHHHhcCCChHHHHHHHHccccH
Confidence 6777778877554321 11 1111 2556665555566 88888887777766544443222 244
Q ss_pred HHHHHhhccC-CChHHHhHHHHHHH
Q 003201 525 GAALAAGLAD-FHQDVHDRALFYHR 548 (840)
Q Consensus 525 ~~vL~~~~~d-~d~dVrdRA~~Y~r 548 (840)
..++..+.+- .+.++|.||....+
T Consensus 700 ~~Ll~lL~~~~~~~~l~~R~~~~l~ 724 (778)
T 3opb_A 700 ENAIQVFADQIDDIELRQRLLMLFF 724 (778)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHH
Confidence 4555555543 78999999887654
No 64
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.87 E-value=0.00076 Score=83.61 Aligned_cols=122 Identities=15% Similarity=0.090 Sum_probs=67.0
Q ss_pred CCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCC--------Ch---hhhHHHHHHHHHh
Q 003201 74 TSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL--------RV---ANLVEYLVGPLGL 142 (840)
Q Consensus 74 S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I--------~~---~~i~e~l~~~v~~ 142 (840)
++|-..|+-+.-++..+ +.+|+....+..-+. .+.++.+|-.|+.++-+. .. ..+-+.+...+.+
T Consensus 36 ~~~~~~r~~A~~~L~~~-~~~p~~~~~~~~lL~---~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~ 111 (963)
T 2x19_B 36 DPNIENKNLAQKWLMQA-QVSPQAWHFSWQLLQ---PDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITR 111 (963)
T ss_dssp CCCHHHHHHHHHHHHHH-HHSTTHHHHHHHHTS---TTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH-hcCHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHHHH
Confidence 34445555555555554 234443222222222 244566665555555432 11 1233444444444
Q ss_pred ccCCCChHHHHHHHHHHHHHHhh-cCCcccCCCchHHHHHHHhcC-----CChhHHHHHHHHHHHHH
Q 003201 143 GLKDNNSYVRTVAVIGVLKLYHI-SAPTCIDADFPPTLKHLMLND-----PDPQVVANCLSALQEIW 203 (840)
Q Consensus 143 ~L~d~~pyVRK~Aala~~kl~~~-~p~~~~~~~~~~~L~~lLL~D-----~d~~Vv~~al~~L~eI~ 203 (840)
. .+..++||.+.+.++..+.+. +|+.- +++++.|..+ ++. +++...-.++.+|..+.
T Consensus 112 ~-~~~~~~ir~kl~~~la~i~~~~~p~~W--p~~l~~l~~~-~~~~~~~~~~~~~~~~~l~iL~~l~ 174 (963)
T 2x19_B 112 F-ASGSKIVLTRLCVALASLALSMMPDAW--PCAVADMVRL-FQAEDSPVDGQGRCLALLELLTVLP 174 (963)
T ss_dssp T-TTSCHHHHHHHHHHHHHHHHHHTTTTS--TTHHHHHHHH-HCC------CHHHHHHHHHHHHHHH
T ss_pred H-cCCCHHHHHHHHHHHHHHHHHhCcccc--chHHHHHHHH-HhhhccCCCcHHHHHHHHHHHHhCH
Confidence 2 223699999999999999876 47654 5677777776 454 25555666666665554
No 65
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.85 E-value=0.0023 Score=74.84 Aligned_cols=352 Identities=12% Similarity=0.070 Sum_probs=215.1
Q ss_pred CCCCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCc-------cchhhhhhhhccCCCcchHHHHHHHHH
Q 003201 16 PSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDV-------SAVFGEMVMCSATSDIVLKKMCYLYVG 88 (840)
Q Consensus 16 ~~~k~Ei~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG~Dv-------S~lF~~Vi~l~~S~d~~~KkL~YLyl~ 88 (840)
..+.+++..|-..|++ ++.+.+.++.. .|..+..|.+- ....+..|+++.+.+...+.-+=-+|.
T Consensus 44 ~~~~~~i~~LV~~L~s-------~~~~~q~~Aa~-~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~ 115 (584)
T 3l6x_A 44 NWRQPELPEVIAMLGF-------RLDAVKSNAAA-YLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALK 115 (584)
T ss_dssp CCCCCCHHHHHHHTTC-------SCHHHHHHHHH-HHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHCC-------CCHHHHHHHHH-HHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3456788888888865 44566777774 55666665431 224567789999999999999999999
Q ss_pred HhccC-CCchHHH-----HHHHHHhhcCC-CChhhHhH---HHHHhhCCCh--hhhHHHHHHHHHhcc------------
Q 003201 89 NYAKV-NPDLALL-----TINFLQRDCKD-EDPMIRGL---ALRSLCSLRV--ANLVEYLVGPLGLGL------------ 144 (840)
Q Consensus 89 ~~~~~-~~dl~lL-----~iNtl~KDl~~-~Np~ir~L---ALr~l~~I~~--~~i~e~l~~~v~~~L------------ 144 (840)
+++.. +++--.. +|..|.+=|.+ +++.++.. ||..|++-.. ..|++..++++.+++
T Consensus 116 nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~ 195 (584)
T 3l6x_A 116 NISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPN 195 (584)
T ss_dssp HHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----
T ss_pred HHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccccc
Confidence 99874 4443221 24556666655 46666655 5566665221 234455566666654
Q ss_pred ------CCCChHHHHHHHHHHHHHHhhcCC----cccCCCchHHHHHHHh-----cCCChhHHHHHHHHHHHHHhhc---
Q 003201 145 ------KDNNSYVRTVAVIGVLKLYHISAP----TCIDADFPPTLKHLML-----NDPDPQVVANCLSALQEIWSLE--- 206 (840)
Q Consensus 145 ------~d~~pyVRK~Aala~~kl~~~~p~----~~~~~~~~~~L~~lLL-----~D~d~~Vv~~al~~L~eI~~~~--- 206 (840)
...++.|++.|+-|+..+-.-+++ .+...+.++.|..+|- .+.+...+-+|+.+|..++..-
T Consensus 196 ~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e 275 (584)
T 3l6x_A 196 EDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHRE 275 (584)
T ss_dssp ------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccccc
Confidence 123679999999999888654433 1123566767766632 2356678889999987765321
Q ss_pred -cCc--chH------------HHHHHHhhccHHHHHHHHHhhcc-CChhHHHHHHHHHHhcCCCCh---hHH------HH
Q 003201 207 -AST--SEE------------ASREREALISKPVIYYLLNRIKE-FSEWAQCLVLELVAKYVPLDS---NEI------FD 261 (840)
Q Consensus 207 -~~~--~~~------------~~~~~~~li~~~~~~~Ll~~l~~-~~~W~Qi~iL~lL~~y~p~~~---~e~------~~ 261 (840)
+.. ..+ .......+.+...++.|+..+.. .++..|......|..++..+. ... ..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~ 355 (584)
T 3l6x_A 276 IPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEK 355 (584)
T ss_dssp STTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHH
T ss_pred ccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcC
Confidence 100 000 00012233455667777777754 478888888888888865442 111 24
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCC--------CchhHHHHHHHHHHHHhhC
Q 003201 262 IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSG--------SPEQSYAVLSHLHILVMRA 333 (840)
Q Consensus 262 il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~--------~~nirY~aL~~l~~l~~~~ 333 (840)
.+..|..+|.+.+..|+..|+.++-++.... ..+..+-....+.|+.+|.++ ..++..-++..|.-|+...
T Consensus 356 glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~-~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~ 434 (584)
T 3l6x_A 356 ALSAIADLLTNEHERVVKAASGALRNLAVDA-RNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAEN 434 (584)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-hHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCC
Confidence 4777888999999999999999998886542 233333345778899999765 2467778888888777654
Q ss_pred CC----ccccc-ccEE-EEccC--CCHHHHHHHHHHHHhccCCCCHHHHHH
Q 003201 334 PF----IFASD-YKHF-YCQYN--EPSYVKKLKLEMLTAVANESNTYEIVT 376 (840)
Q Consensus 334 p~----~~~~~-~~~f-~c~~~--dp~~IK~~kLdiL~~L~n~~Nv~~Iv~ 376 (840)
|. +.... +..+ .++.+ ....+++.+--+|+.|++.+....+++
T Consensus 435 ~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~k 485 (584)
T 3l6x_A 435 LEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLE 485 (584)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 42 11111 1111 11222 244566666666666665554444443
No 66
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.84 E-value=0.00018 Score=70.36 Aligned_cols=213 Identities=12% Similarity=0.122 Sum_probs=138.4
Q ss_pred CCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccC-ChhHHHHHHHHHHh
Q 003201 172 DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEF-SEWAQCLVLELVAK 250 (840)
Q Consensus 172 ~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~-~~W~Qi~iL~lL~~ 250 (840)
+..+.+.+..+ |+|.==.|..||+.++..|.+..|+ +..+.+.+|+-.+... +=-+...|=+.+..
T Consensus 30 d~~~l~~lI~~-LDDDlwtV~kNAl~vi~~i~~~~~e------------l~epl~~kL~vm~~ksEaIpltqeIa~a~G~ 96 (253)
T 2db0_A 30 DESVLKKLIEL-LDDDLWTVVKNAISIIMVIAKTRED------------LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQ 96 (253)
T ss_dssp CHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHTTCGG------------GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-hccHHHHHHHhHHHHHHHHHHHhHH------------HHHHHHHHHHHHHhhcccCchHHHHHHHHhH
Confidence 35577888887 5665558999999999999875553 1234566776654322 11122334444444
Q ss_pred cCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHH
Q 003201 251 YVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILV 330 (840)
Q Consensus 251 y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~ 330 (840)
.....|+....+++.+..-.+-..+-+-..-..++-.+....|.+ +..+..-++++++|++..=|.++|.-|.-+.
T Consensus 97 la~i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l----~~~v~rdi~smltskd~~Dkl~aLnFi~alG 172 (253)
T 2db0_A 97 MAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPML----MASIVRDFMSMLSSKNREDKLTALNFIEAMG 172 (253)
T ss_dssp HHHHCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCC
T ss_pred HHHhCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 444455666666666665555444433322222222222222332 3334555778899888888999998888887
Q ss_pred hhCCCcccccccEEE-EccCCCHHHHHHHHHHHHhccC--CCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 003201 331 MRAPFIFASDYKHFY-CQYNEPSYVKKLKLEMLTAVAN--ESNTYEIVTELCEYAANVDIPIARESIRAVGKIAL 402 (840)
Q Consensus 331 ~~~p~~~~~~~~~f~-c~~~dp~~IK~~kLdiL~~L~n--~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~ 402 (840)
..+|..+.+++..++ .++|++.-+|.-+.+.|..++. +. +..|+.+-++-+.+.+..+..++..++++++.
T Consensus 173 en~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-lRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 173 ENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-LRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp TTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred ccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 777777888875444 6688999999999999999874 44 66777766666677777788888888888764
No 67
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.82 E-value=0.00027 Score=80.51 Aligned_cols=218 Identities=14% Similarity=0.092 Sum_probs=145.4
Q ss_pred CChhhHhHHHHHhhCCC---h--hhhH---HHHHHHHHhccCCCChHHHHHHHHHHHHHHhh-cC---CcccCCCchHHH
Q 003201 112 EDPMIRGLALRSLCSLR---V--ANLV---EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SA---PTCIDADFPPTL 179 (840)
Q Consensus 112 ~Np~ir~LALr~l~~I~---~--~~i~---e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~-~p---~~~~~~~~~~~L 179 (840)
.|+.++-.|..+|.+|. . +..+ .-.++.+.++|.++++.||..|+-++..+-.. ++ +.+.+.+.++.|
T Consensus 212 ~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~L 291 (458)
T 3nmz_A 212 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 291 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHH
Confidence 35666666655555542 2 2222 34589999999999999999999999887542 22 334456788888
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccC--Chh--HHHH---HHHHHHhcC
Q 003201 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEF--SEW--AQCL---VLELVAKYV 252 (840)
Q Consensus 180 ~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~--~~W--~Qi~---iL~lL~~y~ 252 (840)
.++|+...++.+..+|+.+|..+....... ...+ ......+..|...+... ++| .+.. +|+-|..|.
T Consensus 292 V~lLl~s~~~~v~~~A~~aL~nLs~~~~~n----k~~I--~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~ 365 (458)
T 3nmz_A 292 MECALEVKKESTLKSVLSALWNLSAHCTEN----KADI--CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 365 (458)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHHHHHCHHH----HHHH--HHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHccCCHHH----HHHH--HHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc
Confidence 887567778999999999999887532210 0111 11223455566655543 344 3333 444444432
Q ss_pred CCChhHHHH-----HHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHH-HHHHHHHHhhcCCCchhHHHHHHHH
Q 003201 253 PLDSNEIFD-----IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHL 326 (840)
Q Consensus 253 p~~~~e~~~-----il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~-rl~~~L~~lLss~~~nirY~aL~~l 326 (840)
..+++.... .+..+..+|++.+..|.-+|+.++..+....++....+.+ .+.++|+.+|.++++.++-.+...|
T Consensus 366 a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL 445 (458)
T 3nmz_A 366 ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 445 (458)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 234333332 4567778888888899999999999987544443333333 3568899999989999999999999
Q ss_pred HHHHhhCCC
Q 003201 327 HILVMRAPF 335 (840)
Q Consensus 327 ~~l~~~~p~ 335 (840)
.-|+..+|.
T Consensus 446 ~nL~~~~p~ 454 (458)
T 3nmz_A 446 RNLMANRPA 454 (458)
T ss_dssp HHHHTCCSC
T ss_pred HHHHcCCHh
Confidence 999988875
No 68
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.81 E-value=0.0041 Score=77.23 Aligned_cols=442 Identities=9% Similarity=0.040 Sum_probs=207.4
Q ss_pred hhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCC--------C---hhhhHHHHH
Q 003201 69 VMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL--------R---VANLVEYLV 137 (840)
Q Consensus 69 i~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I--------~---~~~i~e~l~ 137 (840)
+..+.++|-..|+-+.-+|..+ +.+|+....+..-+.+ +.|+.+|-.|..++-+. . -..+-+++.
T Consensus 13 l~~~~~~d~~~r~~A~~~L~~~-~~~p~~w~~~~~lL~~---~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll 88 (971)
T 2x1g_F 13 VVSFYRSNSQNQAITHEWLTDA-EASPQAWQFSWQLMQL---GKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKIL 88 (971)
T ss_dssp HHHHHTSTTTC----CHHHHHT-TTSTHHHHHHHHHTCT---TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHH
Confidence 3334455666777788888775 5567754444433433 56888888887776642 1 123445555
Q ss_pred HHHHhccCCCChHHHHHHHHHHHHHHhhc-CCcccCCCchHHHHHHHhcCC------ChhHHHHHHHHHHHHHh----hc
Q 003201 138 GPLGLGLKDNNSYVRTVAVIGVLKLYHIS-APTCIDADFPPTLKHLMLNDP------DPQVVANCLSALQEIWS----LE 206 (840)
Q Consensus 138 ~~v~~~L~d~~pyVRK~Aala~~kl~~~~-p~~~~~~~~~~~L~~lLL~D~------d~~Vv~~al~~L~eI~~----~~ 206 (840)
..+.+.-. ..++||.+.+.++..+.+.+ | .- +++++.|..+ +..+ |+.+.-.++.+|..+.+ .+
T Consensus 89 ~~l~~~~~-~~~~vr~kl~~~la~i~~~~~p-~W--p~~l~~l~~~-~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~ 163 (971)
T 2x1g_F 89 ESIVRFAG-GPKIVLNRLCISLGAYIVHMLG-EW--PGAIEEVINT-FQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIH 163 (971)
T ss_dssp HHHHHHTT-SCHHHHHHHHHHHHHHHHHTTC-C--------HHHHH-HHHTC----CHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHHHHHccc-cc--cHHHHHHHHH-HhccccccCCCHHHHHHHHHHHHHhHHHHhccC
Confidence 55555433 35899999999999998764 4 22 4555666665 3433 45555566666654432 21
Q ss_pred cCcchHHHHHHHhhccHH---HHHHHHHhhccC----Chh-HHHHHHHHHHhcC-----CCChhHHHHHHHHHHHHhc--
Q 003201 207 ASTSEEASREREALISKP---VIYYLLNRIKEF----SEW-AQCLVLELVAKYV-----PLDSNEIFDIMNLLEDRLQ-- 271 (840)
Q Consensus 207 ~~~~~~~~~~~~~li~~~---~~~~Ll~~l~~~----~~W-~Qi~iL~lL~~y~-----p~~~~e~~~il~~l~~~L~-- 271 (840)
+........+.....-+. .+.+++...... +.| .....|+.+..|. |.+ ....+++.+.. |.
T Consensus 164 ~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~--~~~~ll~~l~~-L~~~ 240 (971)
T 2x1g_F 164 TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE--GCVTITAVLLE-VVHK 240 (971)
T ss_dssp CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG--GHHHHHHHHHH-HHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc--ccccHHHHHHh-hhhh
Confidence 110000000000000011 122222221111 013 4666777776543 322 33445555544 31
Q ss_pred --------------cCChHHHHHHHHHHHhccCC-CchhHHHHHHHHHHHHHH----h---hcCCCc---hhHHHHHHHH
Q 003201 272 --------------HANGAVVLSTIKVFLHLTLS-MTDVHQQVYERIKAPLLT----L---VSSGSP---EQSYAVLSHL 326 (840)
Q Consensus 272 --------------~~n~aVvleaik~il~l~~~-~~~~~~~~l~rl~~~L~~----l---Lss~~~---nirY~aL~~l 326 (840)
+.++.+.-.|+.++..+... .+.-....+..+.+.+.. + +..++. +..+...+.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~ 320 (971)
T 2x1g_F 241 CYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLF 320 (971)
T ss_dssp HHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHH
T ss_pred hccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHH
Confidence 12344555666666554321 110001122222222222 2 233453 6666666667
Q ss_pred HHHHhhCCCccc-----------cccc----EEE-Ec-c----CCCHHHHHHHHHHHHhccCC----------CC-----
Q 003201 327 HILVMRAPFIFA-----------SDYK----HFY-CQ-Y----NEPSYVKKLKLEMLTAVANE----------SN----- 370 (840)
Q Consensus 327 ~~l~~~~p~~~~-----------~~~~----~f~-c~-~----~dp~~IK~~kLdiL~~L~n~----------~N----- 370 (840)
..+...++..+. .++. .++ |. . .++..|....++.++.++.+ ..
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~ 400 (971)
T 2x1g_F 321 VSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYI 400 (971)
T ss_dssp HHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 666666555443 1221 111 21 1 23445777888877666541 11
Q ss_pred ---HHHHHHHHHHhhh---cC-----C-------HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhc--------Cc-
Q 003201 371 ---TYEIVTELCEYAA---NV-----D-------IPIARESIRAVGKIALQQYDVNAIVDRLLQFLEME--------KD- 423 (840)
Q Consensus 371 ---v~~Iv~EL~~y~~---~~-----d-------~~~~~~~i~aI~~la~k~~~~~~~v~~Ll~LL~~~--------~~- 423 (840)
+..++..+..-+. +. | .++|+.+...+..++..+++ .+++.++.++... .+
T Consensus 401 ~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~--~~l~~~~~~l~~~l~~~~~~~~~w 478 (971)
T 2x1g_F 401 KPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLND--YILEILAAMLDEAIADLQRHPTHW 478 (971)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTT--HHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhccCCCCcH
Confidence 1122233322221 10 1 13566666677777766653 3444444433221 12
Q ss_pred hhhHHHHHHHHHHHhhCCCcc-h---hHHHHHHhhhcccCCchHHHHHHHHHHcCcCCCCCC----hHHHHHHHHHhhcc
Q 003201 424 YVTAEALVLVKDLLRKYPQWS-H---DCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD----APYILESLTENWEE 495 (840)
Q Consensus 424 ~v~~e~v~~i~~il~~~p~~~-~---~~~~~l~~l~~~~i~~~~ak~a~iwilGEy~~~i~~----~~~il~~l~~~~~~ 495 (840)
...+-++..+..|.+..++.. . ..+.++..+..+ -..|.++.+++|.+|.|++.+.. .+.+++.++..+ +
T Consensus 479 ~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~-d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~ 556 (971)
T 2x1g_F 479 TKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYE-KLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N 556 (971)
T ss_dssp HHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTT-TSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCcc-ccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C
Confidence 123334444555544333211 1 112222222111 12688899999999999876543 445566666665 2
Q ss_pred CCcHHHHHHHHHHHhHHhhcCChhHHHHHHHHHH
Q 003201 496 EPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALA 529 (840)
Q Consensus 496 e~~~~vk~~lLta~~Kl~~~~p~e~~~~l~~vL~ 529 (840)
+.|+...-.|+.++.-....+..+.+..+++
T Consensus 557 ---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~ 587 (971)
T 2x1g_F 557 ---SSMSAQATLGLKELCRDCQLQLKPYADPLLN 587 (971)
T ss_dssp ---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 4578888888888775454444444444443
No 69
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.78 E-value=0.00061 Score=77.56 Aligned_cols=286 Identities=12% Similarity=0.087 Sum_probs=175.6
Q ss_pred hHHHHHHHHHHHHHHhhcCCccc---CCCch----------HHHHHHHhcCC--------ChhH-------HHHHHHHHH
Q 003201 149 SYVRTVAVIGVLKLYHISAPTCI---DADFP----------PTLKHLMLNDP--------DPQV-------VANCLSALQ 200 (840)
Q Consensus 149 pyVRK~Aala~~kl~~~~p~~~~---~~~~~----------~~L~~lLL~D~--------d~~V-------v~~al~~L~ 200 (840)
+-+|..|+-|+..+-.-.|+... +...+ +.+.++ +... +| | ..+|+.+|.
T Consensus 96 ~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~qAv~aL~ 173 (458)
T 3nmz_A 96 KEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEW-QEAHEPGMDQDKNP-MPAPVEHQICPAVCVLM 173 (458)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTSSSSCCCSCC---CCCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHH-HHhhccccccccCC-ccchhhHHHHHHHHHHH
Confidence 68888888888888888887641 11122 222333 2211 12 3 347888888
Q ss_pred HHHhhccCcchHHHHHHHhhccHHHHHHHHHhhcc-----------CChhHHHHHHHHHHhcCCCChhHH------HHHH
Q 003201 201 EIWSLEASTSEEASREREALISKPVIYYLLNRIKE-----------FSEWAQCLVLELVAKYVPLDSNEI------FDIM 263 (840)
Q Consensus 201 eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~-----------~~~W~Qi~iL~lL~~y~p~~~~e~------~~il 263 (840)
.|... + .+++ .++....+..|++.+.. .++-.|......|..++..++.-. ...+
T Consensus 174 nls~~-~-----e~R~--~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaI 245 (458)
T 3nmz_A 174 KLSFD-E-----EHRH--AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 245 (458)
T ss_dssp HHTTS-H-----HHHH--HHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHH
T ss_pred HhcCC-H-----HHHH--HHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcH
Confidence 87532 1 1222 11222234444444421 123457777777777766554222 2347
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhccCC-CchhHHHHHH-HHHHHHHHh-hcCCCchhHHHHHHHHHHHHhhCC----Cc
Q 003201 264 NLLEDRLQHANGAVVLSTIKVFLHLTLS-MTDVHQQVYE-RIKAPLLTL-VSSGSPEQSYAVLSHLHILVMRAP----FI 336 (840)
Q Consensus 264 ~~l~~~L~~~n~aVvleaik~il~l~~~-~~~~~~~~l~-rl~~~L~~l-Lss~~~nirY~aL~~l~~l~~~~p----~~ 336 (840)
+.+..+|++.+..|...|+.++.++... ..+.+..+.+ ...++|+.+ +.+++++++-.++..+.-|+...+ .+
T Consensus 246 p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I 325 (458)
T 3nmz_A 246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 325 (458)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 7788889988899999999999888653 2333333332 456789986 455678888888888877765221 12
Q ss_pred c-ccc-ccEEE--EccCCC---HHHHHHHHHHHHhcc-----CCCCHHHH-----HHHHHHhhhcCCHHHHHHHHHHHHH
Q 003201 337 F-ASD-YKHFY--CQYNEP---SYVKKLKLEMLTAVA-----NESNTYEI-----VTELCEYAANVDIPIARESIRAVGK 399 (840)
Q Consensus 337 ~-~~~-~~~f~--c~~~dp---~~IK~~kLdiL~~L~-----n~~Nv~~I-----v~EL~~y~~~~d~~~~~~~i~aI~~ 399 (840)
. ... +..+. ....++ ..|+..+.-+|..|+ +++|...| +.-|.+.+.+.+.+.+++++.+|+.
T Consensus 326 ~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~n 405 (458)
T 3nmz_A 326 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN 405 (458)
T ss_dssp HHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 1 110 11110 112222 247888888888876 55565554 4557778888888899999999999
Q ss_pred HHhhcCCh------HHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcc
Q 003201 400 IALQQYDV------NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWS 444 (840)
Q Consensus 400 la~k~~~~------~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~ 444 (840)
++...++. ..++..|+++|..+...+...+...+.+|..+.|..+
T Consensus 406 La~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ky 456 (458)
T 3nmz_A 406 LSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 456 (458)
T ss_dssp HHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSCC-
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHhhh
Confidence 88543321 2367788888887767778888888888888888754
No 70
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.77 E-value=0.00031 Score=72.48 Aligned_cols=141 Identities=14% Similarity=0.141 Sum_probs=111.5
Q ss_pred CCccchhh-hhhhhccCCCcchHHHHHHHHHHhccCCCch----HHHHHHHHHhhcC-CCChhhHhHHHHHhhCCCh---
Q 003201 59 IDVSAVFG-EMVMCSATSDIVLKKMCYLYVGNYAKVNPDL----ALLTINFLQRDCK-DEDPMIRGLALRSLCSLRV--- 129 (840)
Q Consensus 59 ~DvS~lF~-~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl----~lL~iNtl~KDl~-~~Np~ir~LALr~l~~I~~--- 129 (840)
.|+..-++ .+.+.+.+.+...|+.+...+..+.+.++++ ..-+++.+.+=+. |+|+.+|..|+++++.+..
T Consensus 10 ~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~ 89 (242)
T 2qk2_A 10 VDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA 89 (242)
T ss_dssp BCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG
T ss_pred ccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh
Confidence 45555444 4567888999999999999998887653221 1344777887784 8999999999999998753
Q ss_pred ---hhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 003201 130 ---ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (840)
Q Consensus 130 ---~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~ 204 (840)
...++.+++.|.+.+.|+++.||..|+.|+..++...+ + ..+++.+... ++++++.|...++..|..+..
T Consensus 90 ~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~--~~ll~~l~~~-l~~~~~~vr~~~l~~l~~~l~ 162 (242)
T 2qk2_A 90 KRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--L--EAQQESIVES-LSNKNPSVKSETALFIARALT 162 (242)
T ss_dssp GGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--H--HHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--H--HHHHHHHHHH-HcCCChHHHHHHHHHHHHHHH
Confidence 25677889999999999999999999999999987543 2 4567888887 689999999999999998754
No 71
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.55 E-value=0.00074 Score=72.47 Aligned_cols=152 Identities=16% Similarity=0.088 Sum_probs=109.9
Q ss_pred HHHHHh-ccCCCChHHHHHHHHHHHHHHhhcCC---cccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchH
Q 003201 137 VGPLGL-GLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEE 212 (840)
Q Consensus 137 ~~~v~~-~L~d~~pyVRK~Aala~~kl~~~~p~---~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~ 212 (840)
++++.+ +|.++++.||..|+.|+..+..-+|+ .+.+.+.++.|..+|-.++++.|..+|+.+|..|++..+.
T Consensus 83 l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~---- 158 (296)
T 1xqr_A 83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA---- 158 (296)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHH----
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcH----
Confidence 345555 99999999999999999999887764 3345678888888843367899999999999988754321
Q ss_pred HHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCC
Q 003201 213 ASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM 292 (840)
Q Consensus 213 ~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~ 292 (840)
....+.. ...+..+..+|++.+..|..+|+.++.++....
T Consensus 159 ------------~~~~~~~----------------------------~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~ 198 (296)
T 1xqr_A 159 ------------GLLQFLR----------------------------LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH 198 (296)
T ss_dssp ------------HHHHHHH----------------------------TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred ------------HHHHHHH----------------------------CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 0111110 023456666777778888888888888876444
Q ss_pred chhHHHHHH-HHHHHHHHhhcCCCchhHHHHHHHHHHHHhh
Q 003201 293 TDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMR 332 (840)
Q Consensus 293 ~~~~~~~l~-rl~~~L~~lLss~~~nirY~aL~~l~~l~~~ 332 (840)
++....+.+ .+.++|+.+|.++++.++..+++.|..|+..
T Consensus 199 ~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 199 PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp GGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 443333333 4678899999999999999999999988854
No 72
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.0053 Score=73.32 Aligned_cols=321 Identities=11% Similarity=0.116 Sum_probs=184.8
Q ss_pred hhhHhHHHHHhhCCCh-----hhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCc----ccCCCchHHHHHHHh
Q 003201 114 PMIRGLALRSLCSLRV-----ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT----CIDADFPPTLKHLML 184 (840)
Q Consensus 114 p~ir~LALr~l~~I~~-----~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~----~~~~~~~~~L~~lLL 184 (840)
+.+|.+|+-.||+++. ..-+..+...+++.|.+++.-.|+-|+-++.-+ ..+|+. ..++++++.|.++ +
T Consensus 308 ~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYL-Sl~~~VKe~L~~d~~~L~~Lv~l-l 385 (778)
T 3opb_A 308 EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYL-SLKASVKIMIRSNESFTEILLTM-I 385 (778)
T ss_dssp GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH-TTSSHHHHHHHHCHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-hCCHHHHHHHHhCHHHHHHHHHH-H
Confidence 5677777777776542 122344666667767665544577777777655 234432 2356678888887 5
Q ss_pred cC-CChhHHHHHHHHHHHHHhhccCcch-----------------H------------HHHH--HHhhccHHHHHHHHHh
Q 003201 185 ND-PDPQVVANCLSALQEIWSLEASTSE-----------------E------------ASRE--REALISKPVIYYLLNR 232 (840)
Q Consensus 185 ~D-~d~~Vv~~al~~L~eI~~~~~~~~~-----------------~------------~~~~--~~~li~~~~~~~Ll~~ 232 (840)
.+ .|..+...++.+|..+....+.... + ...+ +..++....+..|...
T Consensus 386 k~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~L 465 (778)
T 3opb_A 386 KSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKRE 465 (778)
T ss_dssp TTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHH
T ss_pred hCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHH
Confidence 64 6778899999999888764332111 0 0001 1122222344455555
Q ss_pred hccCChhHHHHHHHHHHhcCCCChhHHHH-----HHHHHHHHhccCChH---HHHHHHHHHHhccCC-CchhH--H-HHH
Q 003201 233 IKEFSEWAQCLVLELVAKYVPLDSNEIFD-----IMNLLEDRLQHANGA---VVLSTIKVFLHLTLS-MTDVH--Q-QVY 300 (840)
Q Consensus 233 l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~-----il~~l~~~L~~~n~a---Vvleaik~il~l~~~-~~~~~--~-~~l 300 (840)
+...++=.|..+.+.|..+.. +++.... .+..|..+|.+.+.. +-..|+.++.++..+ ++.+. . ..+
T Consensus 466 l~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~ 544 (778)
T 3opb_A 466 MHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSAL 544 (778)
T ss_dssp GGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCST
T ss_pred HcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccc
Confidence 666677777777777777653 2332222 244556666554322 556667776665422 22210 0 011
Q ss_pred HHHHHHHHHhhcC-CCc------------hh-HHHHHHHHHHHHhhCC--------Ccccc--cccEE-EEccCCCHHHH
Q 003201 301 ERIKAPLLTLVSS-GSP------------EQ-SYAVLSHLHILVMRAP--------FIFAS--DYKHF-YCQYNEPSYVK 355 (840)
Q Consensus 301 ~rl~~~L~~lLss-~~~------------ni-rY~aL~~l~~l~~~~p--------~~~~~--~~~~f-~c~~~dp~~IK 355 (840)
..++||+.||.. .+. .+ +|-||.+|.-|+.... .++.. ....+ .+..++...||
T Consensus 545 -~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~Vr 623 (778)
T 3opb_A 545 -NAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQ 623 (778)
T ss_dssp -THHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHH
T ss_pred -cchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHH
Confidence 366788888872 111 12 7888888877776431 12332 12222 23455667888
Q ss_pred HHHHHHHHhccCCC-CH-HHH-----------HHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCh-------HHHHHHHH
Q 003201 356 KLKLEMLTAVANES-NT-YEI-----------VTELCEYAANVDIPIARESIRAVGKIALQQYDV-------NAIVDRLL 415 (840)
Q Consensus 356 ~~kLdiL~~L~n~~-Nv-~~I-----------v~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~-------~~~v~~Ll 415 (840)
+.+.+++..|+... .+ ..+ ++-|..++...|.+.++.+.-+++.++..+|.. ...++.++
T Consensus 624 rAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll 703 (778)
T 3opb_A 624 RSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAI 703 (778)
T ss_dssp HHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHH
Confidence 88888888876433 22 122 445667777778888888888888876544421 23566777
Q ss_pred HHhhh--cCchhhHHHHHHHHHHHh
Q 003201 416 QFLEM--EKDYVTAEALVLVKDLLR 438 (840)
Q Consensus 416 ~LL~~--~~~~v~~e~v~~i~~il~ 438 (840)
+++.. ..+.+..-.+.++.++..
T Consensus 704 ~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 704 QVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHH
Confidence 77776 555666666777777775
No 73
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.52 E-value=0.00099 Score=71.47 Aligned_cols=185 Identities=14% Similarity=0.091 Sum_probs=134.7
Q ss_pred CCcHHHHHHHHHhhhcCCC--------CCChHHHHHHHHHHHHHHhcCCCc------cchhhhhhh-hccCCCcchHHHH
Q 003201 19 KGEVSDLKSQLRQLAGSRA--------PGIDDSKRELFKKVISYMTIGIDV------SAVFGEMVM-CSATSDIVLKKMC 83 (840)
Q Consensus 19 k~Ei~elr~~L~~~~~~~~--------~~~~~~kk~~lkKlI~~m~lG~Dv------S~lF~~Vi~-l~~S~d~~~KkL~ 83 (840)
..+...+|..+.-+.+... ..+.+.|..++..+-.+.- +.|. ...++.++. ++.+++...|.-+
T Consensus 24 ~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~A 102 (296)
T 1xqr_A 24 RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRA 102 (296)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHH
Confidence 5677778887776643210 0112467777765554443 3332 224666788 9999999999999
Q ss_pred HHHHHHhccCCCchHHH-----HHHHHHhhcC-CCChhhHhHHHHHhhCCC--hhh----hH-HHHHHHHHhccCCCChH
Q 003201 84 YLYVGNYAKVNPDLALL-----TINFLQRDCK-DEDPMIRGLALRSLCSLR--VAN----LV-EYLVGPLGLGLKDNNSY 150 (840)
Q Consensus 84 YLyl~~~~~~~~dl~lL-----~iNtl~KDl~-~~Np~ir~LALr~l~~I~--~~~----i~-e~l~~~v~~~L~d~~py 150 (840)
--.+.+.+..+++.--. ++..|.+=++ ++++.+|..|+.+|++|. .+. +. ...++.+.++|.++++-
T Consensus 103 a~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~ 182 (296)
T 1xqr_A 103 AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQK 182 (296)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence 99999999887764222 3344444444 468999999999999983 232 22 24677889999999999
Q ss_pred HHHHHHHHHHHHHhhcCCc---ccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhh
Q 003201 151 VRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (840)
Q Consensus 151 VRK~Aala~~kl~~~~p~~---~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~ 205 (840)
||+.|+.++..+..-+|+. +.+.++++.|..+ |.++|+.|+..|+.+|..|...
T Consensus 183 v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~L-L~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 183 LKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL-VRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHH-HTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHH-HcCCChhHHHHHHHHHHHHHhC
Confidence 9999999999998877764 3467899999998 6899999999999999999865
No 74
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.48 E-value=0.0065 Score=75.48 Aligned_cols=259 Identities=12% Similarity=0.158 Sum_probs=140.6
Q ss_pred cchHHHHHHHHHHhccCCCchHH-HHHHHHHhhcC------CCChhhHhHHHHHhhCCCh---------h------hhHH
Q 003201 77 IVLKKMCYLYVGNYAKVNPDLAL-LTINFLQRDCK------DEDPMIRGLALRSLCSLRV---------A------NLVE 134 (840)
Q Consensus 77 ~~~KkL~YLyl~~~~~~~~dl~l-L~iNtl~KDl~------~~Np~ir~LALr~l~~I~~---------~------~i~e 134 (840)
.+.|+-+.-.+..++...++..+ .+.+.+..=++ ++|...|=.||..++.|.. . ++.+
T Consensus 375 ~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~ 454 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD 454 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred cCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHH
Confidence 35666666677666666655433 22222222222 4566788788887776621 1 4555
Q ss_pred HHHHHHHhccCCC---ChHHHHHHHHHHHHHHhhcC-CcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc---
Q 003201 135 YLVGPLGLGLKDN---NSYVRTVAVIGVLKLYHISA-PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA--- 207 (840)
Q Consensus 135 ~l~~~v~~~L~d~---~pyVRK~Aala~~kl~~~~p-~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~--- 207 (840)
.+...|...|.|+ +|+||.+|+.++.++....+ +.. ...++.+... +.|+++.|..+|..+|..++....
T Consensus 455 ~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l--~~~l~~l~~~-L~d~~~~V~~~A~~Al~~~~~~~~~~~ 531 (960)
T 1wa5_C 455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQL--IELMPILATF-LQTDEYVVYTYAAITIEKILTIRESNT 531 (960)
T ss_dssp HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHH--HHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTCBSCSS
T ss_pred HHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHH--HHHHHHHHHH-hCCCChhHHHHHHHHHHHHHhcccccc
Confidence 5555666667777 99999999999999876432 222 2334455555 578899999999999999876310
Q ss_pred --CcchHHHHHHHhhccHHHHHHHHHhhccC---------ChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhc----c
Q 003201 208 --STSEEASREREALISKPVIYYLLNRIKEF---------SEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQ----H 272 (840)
Q Consensus 208 --~~~~~~~~~~~~li~~~~~~~Ll~~l~~~---------~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~----~ 272 (840)
... .+++...-...+++.+|+..+... ++..---|-+++..+...-..-...+++.+...++ +
T Consensus 532 ~~~~~--~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~ 609 (960)
T 1wa5_C 532 SPAFI--FHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKN 609 (960)
T ss_dssp SCCBS--SCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTS
T ss_pred ccccc--ccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhC
Confidence 000 001100111234566666655553 23222222223333321111123345555544443 2
Q ss_pred -CChH---HHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCcccccccE
Q 003201 273 -ANGA---VVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKH 343 (840)
Q Consensus 273 -~n~a---Vvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~~ 343 (840)
.+.. -.++|+..++.. ..++....+.+.+.+++...|.....+..=-++..+..++... .-|.+++..
T Consensus 610 ~~~~~~~~~~~e~l~~l~~~--~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~ 681 (960)
T 1wa5_C 610 PSNPRFTHYTFESIGAILNY--TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS-ATIPESIKP 681 (960)
T ss_dssp CCCHHHHHHHHHHHHHHHHT--SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC-SSCCTTTGG
T ss_pred CCCcHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc-cCCCHHHHH
Confidence 2333 357888777765 2233344556677777777776544444433777777777654 334444443
No 75
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.002 Score=67.18 Aligned_cols=136 Identities=13% Similarity=0.075 Sum_probs=107.0
Q ss_pred hhccCCCcchHHHHHHHHHH-hccCCCchH------HHHHHHHHhhc-CCCChhhHhHHHHHhhCCCh----h----hhH
Q 003201 70 MCSATSDIVLKKMCYLYVGN-YAKVNPDLA------LLTINFLQRDC-KDEDPMIRGLALRSLCSLRV----A----NLV 133 (840)
Q Consensus 70 ~l~~S~d~~~KkL~YLyl~~-~~~~~~dl~------lL~iNtl~KDl-~~~Np~ir~LALr~l~~I~~----~----~i~ 133 (840)
..++|++-..||-++..+.. +.+..+++. .-.+..+.+-+ +|+|+.+|..|+++++.+.. + ...
T Consensus 23 ~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~ 102 (249)
T 2qk1_A 23 ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV 102 (249)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH
Confidence 45689999999999999999 875544432 23488889999 79999999999999988532 2 455
Q ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHhh-cCCccc--CCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhc
Q 003201 134 EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SAPTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (840)
Q Consensus 134 e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~-~p~~~~--~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~ 206 (840)
..+++.|...+.|+.+-||..|..|+..++.. +|.... -+.+++.|... ++.+++.|...++..|..+....
T Consensus 103 ~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~-l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEH-MKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHH-TTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHHc
Confidence 67889999999999999999999999999975 443321 12566777776 68889999999999998887543
No 76
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.28 E-value=0.0062 Score=66.92 Aligned_cols=221 Identities=13% Similarity=0.080 Sum_probs=141.6
Q ss_pred ChhHHHHHHHHHHHHHhhccCcchHHHHHHHhh-ccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCC-ChhHHHH----
Q 003201 188 DPQVVANCLSALQEIWSLEASTSEEASREREAL-ISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL-DSNEIFD---- 261 (840)
Q Consensus 188 d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~l-i~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~-~~~e~~~---- 261 (840)
++.+..+|..+|..++..+.. . +... .....+..|+..+...++-.|......|..+.-. +++-...
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~-----~--k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~ 169 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVA-----N--KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV 169 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHH-----H--HHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcCCHH-----H--HHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHC
Confidence 467888999999998754321 0 1111 1234577788888878888888888877776543 3322222
Q ss_pred -HHHHHHHHh-ccCChHHHHHHHHHHHhccCCCchhHHHHH--HHHHHHHHHhhcCCCc----hhHHHHHHHHHHHHhhC
Q 003201 262 -IMNLLEDRL-QHANGAVVLSTIKVFLHLTLSMTDVHQQVY--ERIKAPLLTLVSSGSP----EQSYAVLSHLHILVMRA 333 (840)
Q Consensus 262 -il~~l~~~L-~~~n~aVvleaik~il~l~~~~~~~~~~~l--~rl~~~L~~lLss~~~----nirY~aL~~l~~l~~~~ 333 (840)
.++.+..+| ++.+..+.-.|+.++..+.....+.+..+. ....++|+.+|.++++ +++.-+...|.-|...-
T Consensus 170 G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~ 249 (354)
T 3nmw_A 170 GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 249 (354)
T ss_dssp THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc
Confidence 355666654 556677888888888888753333333333 3466778888875443 24444444333333100
Q ss_pred CCcccccccEEEEccCCCHHHHHHHHHHHHhccCCCCHHH-----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCh-
Q 003201 334 PFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYE-----IVTELCEYAANVDIPIARESIRAVGKIALQQYDV- 407 (840)
Q Consensus 334 p~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~-----Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~- 407 (840)
.. +++|... .+.-|.+.+.+.+.+.++.++.+|+.++...++.
T Consensus 250 --------------a~-----------------~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~ 298 (354)
T 3nmw_A 250 --------------AT-----------------NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQ 298 (354)
T ss_dssp --------------TT-----------------CHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred --------------cC-----------------CHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHH
Confidence 00 1222221 3566777788888999999999999998643321
Q ss_pred -----HHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchh
Q 003201 408 -----NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHD 446 (840)
Q Consensus 408 -----~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~ 446 (840)
..++..|++||..+...+..++...+.+|....|+.+..
T Consensus 299 ~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~~~ 342 (354)
T 3nmw_A 299 EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKD 342 (354)
T ss_dssp HHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGGC-
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHHhh
Confidence 236888999998877788888999999999998887653
No 77
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.26 E-value=0.0019 Score=65.80 Aligned_cols=179 Identities=10% Similarity=0.079 Sum_probs=136.9
Q ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCccc---CCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcc
Q 003201 134 EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI---DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTS 210 (840)
Q Consensus 134 e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~---~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~ 210 (840)
+.....+..+|.|.++.||-.|..++-++.+.-|+... -.++.+.+..+ +.+.|-.|...|+.+|..+....|
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~l-lk~~dEkval~A~r~L~~LLe~vp--- 107 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINA-LSQENEKVTIKALRALGYLVKDVP--- 107 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT-CCSTTHHHHHHHHHHHHHHHTTCC---
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH-HhccchhHHHHHHHHHHHHHcCCC---
Confidence 44567788999999999999999999999987655431 14566777776 699999999999999999987554
Q ss_pred hHHHHHHHhhccHHHHH----HHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 003201 211 EEASREREALISKPVIY----YLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFL 286 (840)
Q Consensus 211 ~~~~~~~~~li~~~~~~----~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il 286 (840)
+++..+. .|.+.+...++-.+.++.+.+....+.+ ...++++.+..++.|.|.-|--.+++++.
T Consensus 108 ----------L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~--~~~~V~~~l~sLl~Skd~~vK~agl~~L~ 175 (265)
T 3b2a_A 108 ----------MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLE--DSKLVRTYINELVVSPDLYTKVAGFCLFL 175 (265)
T ss_dssp ----------BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC--CCHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCccc--chHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 2233344 4445567789999999999999985544 24678899999998899999999999999
Q ss_pred hccCCCch--hHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhh
Q 003201 287 HLTLSMTD--VHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMR 332 (840)
Q Consensus 287 ~l~~~~~~--~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~ 332 (840)
.+.....+ +...+++ =+-.||++.|+.++=.||..+..|+.+
T Consensus 176 eia~~S~D~~i~~~I~~----eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 176 NMLNSSADSGHLTLILD----EIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHGGGCSSCCCGGGTTT----THHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HhhcccCCHHHHHHHHH----HHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 88754322 2222222 234589999999999999999988754
No 78
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.10 E-value=0.074 Score=64.91 Aligned_cols=209 Identities=14% Similarity=0.099 Sum_probs=140.5
Q ss_pred HHHHHHhcCCCccchhhhhhh-hccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhh---
Q 003201 50 KVISYMTIGIDVSAVFGEMVM-CSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLC--- 125 (840)
Q Consensus 50 KlI~~m~lG~DvS~lF~~Vi~-l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~--- 125 (840)
--+.+...|--=....-.++. ++.+.+-..+|..=+.|....-.+++.+-.++..|.. +.||++|..|.-+++
T Consensus 494 lALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~---~~dp~vRygaa~alglAy 570 (963)
T 4ady_A 494 LGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLA---SDESLLRYGGAFTIALAY 570 (963)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHH---CSCHHHHHHHHHHHHHHT
T ss_pred HHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHh
Confidence 344555556432223344443 3445566778887788887777788887788888876 479999988877775
Q ss_pred -CCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 003201 126 -SLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (840)
Q Consensus 126 -~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~ 204 (840)
..++...++.+... +..|.+.+||+.|++|+..+.--.|+. .+++..+|.++.|+.|..+|..+|-.++.
T Consensus 571 aGTGn~~aIq~LL~~---~~~d~~d~VRraAViaLGlI~~g~~e~------v~rlv~~L~~~~d~~VR~gAalALGli~a 641 (963)
T 4ady_A 571 AGTGNNSAVKRLLHV---AVSDSNDDVRRAAVIALGFVLLRDYTT------VPRIVQLLSKSHNAHVRCGTAFALGIACA 641 (963)
T ss_dssp TTSCCHHHHHHHHHH---HHHCSCHHHHHHHHHHHHHHTSSSCSS------HHHHTTTGGGCSCHHHHHHHHHHHHHHTS
T ss_pred cCCCCHHHHHHHHHH---hccCCcHHHHHHHHHHHHhhccCCHHH------HHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 55666666655444 346889999999999999876555543 45555655688999999999999988865
Q ss_pred hccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhH----HHHHHHHHHHHhc--cCChHHH
Q 003201 205 LEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNE----IFDIMNLLEDRLQ--HANGAVV 278 (840)
Q Consensus 205 ~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e----~~~il~~l~~~L~--~~n~aVv 278 (840)
.+|. +.++.-|-....+.+++.....+-.|....-.+.+. ...++..+..... |..+.+.
T Consensus 642 Gn~~--------------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~ 707 (963)
T 4ady_A 642 GKGL--------------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAK 707 (963)
T ss_dssp SSCC--------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHH
T ss_pred CCCc--------------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHH
Confidence 4442 123443444457889998888888888776554333 5566666666664 4556666
Q ss_pred HHHHHH
Q 003201 279 LSTIKV 284 (840)
Q Consensus 279 leaik~ 284 (840)
|.++-.
T Consensus 708 fga~iA 713 (963)
T 4ady_A 708 FGACVA 713 (963)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 79
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.09 E-value=0.03 Score=54.92 Aligned_cols=201 Identities=13% Similarity=0.087 Sum_probs=140.8
Q ss_pred CCChhhHhHHHHHhhCCC--hhhhHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCC
Q 003201 111 DEDPMIRGLALRSLCSLR--VANLVEYLVGPLGLGLK-DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDP 187 (840)
Q Consensus 111 ~~Np~ir~LALr~l~~I~--~~~i~e~l~~~v~~~L~-d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~ 187 (840)
|.==.++..||+.++.|. -|++.+.+..-+.-.++ |..--.-..-+-++..+-+..|+.+ ...++.+..- ..=.
T Consensus 43 DDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v--~~vVp~lfan-yrig 119 (253)
T 2db0_A 43 DDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV--KSMIPVLFAN-YRIG 119 (253)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH--HHHHHHHHHH-SCCC
T ss_pred cHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH--HhhHHHHHHH-HhcC
Confidence 333457888888888764 36776666665555443 3333333444556666777888887 5566766654 4667
Q ss_pred ChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 003201 188 DPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLE 267 (840)
Q Consensus 188 d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~ 267 (840)
||....|.-.+|.||.+.+|. +-..+++.+...+.+.+.-.....|.++.-.+-...+...-+++++.
T Consensus 120 d~kikIn~~yaLeeIaranP~------------l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~ 187 (253)
T 2db0_A 120 DEKTKINVSYALEEIAKANPM------------LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRII 187 (253)
T ss_dssp SHHHHHHHHHHHHHHHHHCHH------------HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHH
T ss_pred CccceecHHHHHHHHHHhChH------------HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHH
Confidence 899999999999999887763 12346777888888889888999999998887766666666788888
Q ss_pred HHhccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 003201 268 DRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVM 331 (840)
Q Consensus 268 ~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~ 331 (840)
.+|...|..|--+|+-++.++....+.+...+.+++ .=+.+.+.-+++-+-..+.+|..
T Consensus 188 aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl-----~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 188 NLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRL-----EELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHH-----HHCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHH-----HHhcCcHHHHHHHHHHHHHHHHH
Confidence 888888999999999999998766655433222222 23566666777777777777653
No 80
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.00 E-value=0.18 Score=62.32 Aligned_cols=191 Identities=10% Similarity=0.039 Sum_probs=101.6
Q ss_pred HHHHHHHHHhcc---CCCCHHHHHHHHHHhh----hcCCHHHHHHHHHHHHHHHhhcCC-hHHHHHHHHHHhh-hc--Cc
Q 003201 355 KKLKLEMLTAVA---NESNTYEIVTELCEYA----ANVDIPIARESIRAVGKIALQQYD-VNAIVDRLLQFLE-ME--KD 423 (840)
Q Consensus 355 K~~kLdiL~~L~---n~~Nv~~Iv~EL~~y~----~~~d~~~~~~~i~aI~~la~k~~~-~~~~v~~Ll~LL~-~~--~~ 423 (840)
|+..-++|..++ .+..+..+++-+...+ ...+-..+..++.+||.+++...+ ...++..+++.+. .. ..
T Consensus 424 r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~ 503 (963)
T 2x19_B 424 RVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNV 503 (963)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcH
Confidence 444555554444 2222333344444444 344666778899999999988653 2235555555442 22 22
Q ss_pred hhhHHHHHHH---HHHHhhCCCcchhHHHHHHhhhcccCCchHHHHHHHHHHcCcCCC-----CCChHHHHHHHHHhhcc
Q 003201 424 YVTAEALVLV---KDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQD-----MQDAPYILESLTENWEE 495 (840)
Q Consensus 424 ~v~~e~v~~i---~~il~~~p~~~~~~~~~l~~l~~~~i~~~~ak~a~iwilGEy~~~-----i~~~~~il~~l~~~~~~ 495 (840)
.|...++.++ ...+..+|+....+ +..++ ..+.++.++..++|.+..+++. .+-.+.++..+.+-+..
T Consensus 504 ~vr~~~~~~l~~~~~~l~~~~~~l~~v---l~~l~-~~l~~~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~ 579 (963)
T 2x19_B 504 QLADTVMFTIGALSEWLADHPVMINSV---LPLVL-HALGNPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMK 579 (963)
T ss_dssp HHHHHHHHHHHHTHHHHHHCHHHHTTT---HHHHH-HHTTCGGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHH---HHHHH-HHhCCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 3444443333 23333333222222 22222 2334477777777877766543 24466777766654443
Q ss_pred --CCcHHHHHHHHHHHhHHhhcCC-hhHHHHHHHHHHh-------h-ccCCChHHHhHHHHHHHHc
Q 003201 496 --EPSAEVRLHLLTAVMKCFFKRP-PETQKVLGAALAA-------G-LADFHQDVHDRALFYHRLL 550 (840)
Q Consensus 496 --e~~~~vk~~lLta~~Kl~~~~p-~e~~~~l~~vL~~-------~-~~d~d~dVrdRA~~Y~rLL 550 (840)
.+ ..+|..++.|++.+....| ++..+.+..++.. . ....+++.+.....+...|
T Consensus 580 ~~~~-~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l 644 (963)
T 2x19_B 580 QIHK-TSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLL 644 (963)
T ss_dssp TCSC-HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred CCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 34 7899999999999987665 4444444443321 1 1234677766554444444
No 81
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.73 E-value=1.7 Score=53.85 Aligned_cols=152 Identities=14% Similarity=0.134 Sum_probs=80.4
Q ss_pred hHHHHHHHHHhcc-CCCChHHHHHHHHHHHHHHhh-cCCcccCCCchHHHHHHHhcCCCh-hHHHHHHHHHHHHHhh---
Q 003201 132 LVEYLVGPLGLGL-KDNNSYVRTVAVIGVLKLYHI-SAPTCIDADFPPTLKHLMLNDPDP-QVVANCLSALQEIWSL--- 205 (840)
Q Consensus 132 i~e~l~~~v~~~L-~d~~pyVRK~Aala~~kl~~~-~p~~~~~~~~~~~L~~lLL~D~d~-~Vv~~al~~L~eI~~~--- 205 (840)
+-+.+...+.+.- .+..+|||.|.+.++..++.. +|+.- +++++.+..+ +..+++ .++-..+.+|..|.+.
T Consensus 86 lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~W--p~~i~~l~~~-~~~~~~~~~~~~~LriL~~i~EEv~~ 162 (980)
T 3ibv_A 86 IRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNW--NDFFASLQGV-IAASSQSEFSNFYLKVLLSIGDEIAD 162 (980)
T ss_dssp HHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTC--TTHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccC--chHHHHHHHH-hcCCChhHHHHHHHHHHHHhHHHHHh
Confidence 3344555555522 134689999999999999865 68765 6778888776 444344 3444455555533221
Q ss_pred -ccCcchH-HHHH--HHhhcc----HHHHHHHHHhh----ccCChhHHHHHHHHHHhcCCCCh-hHH--HHHHHHHHHHh
Q 003201 206 -EASTSEE-ASRE--REALIS----KPVIYYLLNRI----KEFSEWAQCLVLELVAKYVPLDS-NEI--FDIMNLLEDRL 270 (840)
Q Consensus 206 -~~~~~~~-~~~~--~~~li~----~~~~~~Ll~~l----~~~~~W~Qi~iL~lL~~y~p~~~-~e~--~~il~~l~~~L 270 (840)
......+ ..+. ....+. +.++...+..+ ...++=.....|+.+..|.+.-+ ... ..+++.+...|
T Consensus 163 ~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L 242 (980)
T 3ibv_A 163 SLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFL 242 (980)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHT
T ss_pred cccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHc
Confidence 1000000 0110 000100 00111222222 12355566889999999987532 221 35666666666
Q ss_pred ccCChHHHHHHHHHHHhc
Q 003201 271 QHANGAVVLSTIKVFLHL 288 (840)
Q Consensus 271 ~~~n~aVvleaik~il~l 288 (840)
.. +.+.-+|+.|+..+
T Consensus 243 ~~--~~~r~~A~ecL~ei 258 (980)
T 3ibv_A 243 QI--EELRCAACETMTEI 258 (980)
T ss_dssp TS--HHHHHHHHHHHHHH
T ss_pred CC--hHHHHHHHHHHHHH
Confidence 43 56677777777655
No 82
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.67 E-value=0.69 Score=57.15 Aligned_cols=171 Identities=12% Similarity=0.076 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcC-----CChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHH
Q 003201 150 YVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLND-----PDPQVVANCLSALQEIWSLEASTSEEASREREALISKP 224 (840)
Q Consensus 150 yVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D-----~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~ 224 (840)
-.||.|.-++..++...++.+. +.+.+.+... +.. .|...+=+|+.++..|.+.-... ....+ +.
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l-~~~~~~l~~~-l~~~~~~~~~w~~~eaal~~l~~iae~~~~~-------~~~~l-~~ 505 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYIL-EILAAMLDEA-IADLQRHPTHWTKLEACIYSFQSVAEHFGGE-------EKRQI-PR 505 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHH-HHHHHHHHHH-HHHHHHCTTCCHHHHHHHHHHHHTTTC-------------CHH-HH
T ss_pred HHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHH-HHhccCCCCcHHHHHHHHHHHHHHHhhcChh-------hhHHH-HH
Confidence 4778888888888887774432 2344555554 332 56667778888888886432110 00011 12
Q ss_pred HHHHHHHhhc--cCChhHHHHHHHHHHhcC---CCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHH
Q 003201 225 VIYYLLNRIK--EFSEWAQCLVLELVAKYV---PLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQV 299 (840)
Q Consensus 225 ~~~~Ll~~l~--~~~~W~Qi~iL~lL~~y~---p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~ 299 (840)
++. ++..+. +.++..+...+.++.+|. ..+++-...+++.+...| + +.|.-.|+.++..+.......-...
T Consensus 506 l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~ 581 (971)
T 2x1g_F 506 LMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPY 581 (971)
T ss_dssp HHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhcccc
Confidence 233 444455 357888888888888875 233444556677666666 2 5566666666665542211111123
Q ss_pred HHHHHHHHHHhhcC--CCchhHHHHHHHHHHHHhhCC
Q 003201 300 YERIKAPLLTLVSS--GSPEQSYAVLSHLHILVMRAP 334 (840)
Q Consensus 300 l~rl~~~L~~lLss--~~~nirY~aL~~l~~l~~~~p 334 (840)
+..+...|..+++. -+.+.+..+++.+..++...|
T Consensus 582 ~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 582 ADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR 618 (971)
T ss_dssp HHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence 34455555566665 246778888888888886544
No 83
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=96.66 E-value=0.78 Score=58.34 Aligned_cols=122 Identities=10% Similarity=0.049 Sum_probs=68.0
Q ss_pred CcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCC-------hhh----hHHHHHHHHHhcc
Q 003201 76 DIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR-------VAN----LVEYLVGPLGLGL 144 (840)
Q Consensus 76 d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~-------~~~----i~e~l~~~v~~~L 144 (840)
+-..|+-+.-++..+. .+|+....+.-.|. -.+.|+.+|-.|+.++-+.. .++ +-+.+...+.+..
T Consensus 26 ~~~~r~~Ae~~L~~~~-~~p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~ 102 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFK-EKCPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGT 102 (1204)
T ss_dssp CHHHHHHHHHHHHHHH-HHCTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSS
T ss_pred ChHHHHHHHHHHHHHH-hCchHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhc
Confidence 4445666666665553 33443333333333 23456667766665544321 112 2233333333321
Q ss_pred C---CCChHHHHHHHHHHHHHHhh-cCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 003201 145 K---DNNSYVRTVAVIGVLKLYHI-SAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (840)
Q Consensus 145 ~---d~~pyVRK~Aala~~kl~~~-~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~ 204 (840)
. +..++||.+.+.++..+.+. +|+.- +++++.|..+ ++. ++...-+++.+|..+.+
T Consensus 103 ~~~~~~~~~vr~kla~~la~Ia~~d~p~~W--p~ll~~L~~~-~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 103 LNILEEENHIKDALSRIVVEMIKREWPQHW--PDMLIELDTL-SKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp CCTTSSCHHHHHHHHHHHHHHHHHHSTTTC--TTHHHHHHHH-HHT-CHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHHHhCcccc--hHHHHHHHHH-hcC-CHHHHHHHHHHHHHHHH
Confidence 1 25699999999999999876 47655 6677777776 443 55555566666666643
No 84
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.032 Score=58.65 Aligned_cols=188 Identities=13% Similarity=0.102 Sum_probs=118.2
Q ss_pred HHhccCCCChHHHHHHHHHHHHHHhhcCCcccC-------CCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchH
Q 003201 140 LGLGLKDNNSYVRTVAVIGVLKLYHISAPTCID-------ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEE 212 (840)
Q Consensus 140 v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~-------~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~ 212 (840)
+..-|.|++.-.|+.|+-.+.+++...+..... ..+...++.. +.|.|..|+..++.++..+...-+.....
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~-l~DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQY-ITDSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHH-TTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 456789999999999999999999876543211 2345677776 69999999999999998887532211000
Q ss_pred HHHHHHhhccHHHHHHHHHh-hccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhcc--
Q 003201 213 ASREREALISKPVIYYLLNR-IKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLT-- 289 (840)
Q Consensus 213 ~~~~~~~li~~~~~~~Ll~~-l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~-- 289 (840)
. ......-..++..|+.. +.+..+-.....++.+..+.-.. .....+++.+.+.+++.|+-|..+|+..+..+-
T Consensus 93 -~-~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~-~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 93 -N-AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD-TSITQSVELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp -H-HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS-SSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred -c-chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 0 00000111234555554 56666655555555554432111 012345677888899999999999988876542
Q ss_pred --CCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhh
Q 003201 290 --LSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMR 332 (840)
Q Consensus 290 --~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~ 332 (840)
...-.. ...+..+...+..+++++++++|=.+...+..+-..
T Consensus 170 fg~~~~~~-k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 170 FGLTNVNV-QTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HTTTTCCH-HHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred hCCCcCCc-hhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 111111 223445566678889999999999999988877643
No 85
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.61 E-value=1.5 Score=54.76 Aligned_cols=87 Identities=15% Similarity=0.121 Sum_probs=51.5
Q ss_pred CchHHHHHHHHHHcCcCCCCCCh------HHHHHHHHHhhcc-----CCcHHHHH---HHHHHHhHHhhcCChhHHHHHH
Q 003201 460 QEPKAKAALIWMLGEYSQDMQDA------PYILESLTENWEE-----EPSAEVRL---HLLTAVMKCFFKRPPETQKVLG 525 (840)
Q Consensus 460 ~~~~ak~a~iwilGEy~~~i~~~------~~il~~l~~~~~~-----e~~~~vk~---~lLta~~Kl~~~~p~e~~~~l~ 525 (840)
.++..+.+++|.+|--++.+... +.++..+.. +.. .+.+.++. +++..+.+.+...|.-...++.
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~-l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~ 543 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLD-LTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVIL 543 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHH-HTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHH-HHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45677889999999776554322 233333332 111 12255654 4555556655555544555666
Q ss_pred HHHHhhccCCChHHHhHHHHHHH
Q 003201 526 AALAAGLADFHQDVHDRALFYHR 548 (840)
Q Consensus 526 ~vL~~~~~d~d~dVrdRA~~Y~r 548 (840)
.+++. ..+.++.||.+|..-..
T Consensus 544 ~ll~~-l~~~~~~V~~~A~~al~ 565 (1049)
T 3m1i_C 544 KLFEF-MHETHEGVQDMACDTFI 565 (1049)
T ss_dssp HHHHH-TTSSCHHHHHHHHHHHH
T ss_pred HHHHH-hcCCCHHHHHHHHHHHH
Confidence 66653 45678999999986543
No 86
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.47 E-value=0.52 Score=52.94 Aligned_cols=132 Identities=17% Similarity=0.211 Sum_probs=104.0
Q ss_pred hhhhhhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhcc
Q 003201 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGL 144 (840)
Q Consensus 65 F~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L 144 (840)
|-.++.... .+...|||+=-++..|++.-|++.--++|++..=|.|.++-||--|+|.|..++..+.+.-+...+.++|
T Consensus 31 y~~Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlL 109 (507)
T 3u0r_A 31 YQVILDGVK-GGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLL 109 (507)
T ss_dssp HHHHHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHH
Confidence 444444433 3688999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 003201 145 KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (840)
Q Consensus 145 ~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~ 203 (840)
...++--+...=-++..+++.+|... +...+..+ .. +|..|.-.++..|.+-.
T Consensus 110 qtdd~~E~~~V~~sL~sllk~Dpk~t----l~~lf~~i-~~-~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 110 QTDDSAEFNLVNNALLSIFKMDAKGT----LGGLFSQI-LQ-GEDIVRERAIKFLSTKL 162 (507)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHH-HH-SCHHHHHHHHHHHHHHG
T ss_pred hccchHHHHHHHHHHHHHHhcChHHH----HHHHHHHH-cc-cchHHHHHHHHHHHHHH
Confidence 98888777666667777778887644 22223332 22 46777777777776544
No 87
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.44 E-value=1 Score=56.30 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=45.0
Q ss_pred HHHHHHhccCC-CChHHHHHHHHHHHHHHhhcC-CcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhc
Q 003201 136 LVGPLGLGLKD-NNSYVRTVAVIGVLKLYHISA-PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (840)
Q Consensus 136 l~~~v~~~L~d-~~pyVRK~Aala~~kl~~~~p-~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~ 206 (840)
+...+.+++.+ .++-+|+.|+-|+..+...-| ..+.+..+++.+.+.++. ++.+...|+..|.+|....
T Consensus 195 i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~ 265 (1049)
T 3m1i_C 195 IFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLK 265 (1049)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCC
Confidence 33444444433 467899999988887765444 222335677766643343 7888889999999998653
No 88
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.029 Score=58.98 Aligned_cols=175 Identities=11% Similarity=0.087 Sum_probs=119.7
Q ss_pred hhccCCCcchHHHHHHHHHHhccCCCch---------HHHHHHHHHhhcCCCChhhHhHHHHHhhCCC------------
Q 003201 70 MCSATSDIVLKKMCYLYVGNYAKVNPDL---------ALLTINFLQRDCKDEDPMIRGLALRSLCSLR------------ 128 (840)
Q Consensus 70 ~l~~S~d~~~KkL~YLyl~~~~~~~~dl---------~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~------------ 128 (840)
.-+.|++...|+=||-.+...+...+.. ..-....+.|-+.|.|..+...||.+++.+.
T Consensus 16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~ 95 (278)
T 4ffb_C 16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAH 95 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence 5678889999999999887776543321 1123456788889999999999888886541
Q ss_pred hhhhHHHHHHHHH-hccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Q 003201 129 VANLVEYLVGPLG-LGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (840)
Q Consensus 129 ~~~i~e~l~~~v~-~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~ 207 (840)
....+..+++.+. ++|.|..+-+|..|.-++..+....... ..+.+.+... +...+|.|+..++..|..+...-+
T Consensus 96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~-l~~Knpkv~~~~l~~l~~~l~~fg 171 (278)
T 4ffb_C 96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPF-FEKKLPKLIAAAANCVYELMAAFG 171 (278)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGG-GGCSCHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHH-HhccCHHHHHHHHHHHHHHHHHhC
Confidence 1234556666655 6799999999999999998887653221 2345666666 689999999999888877654211
Q ss_pred CcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHh
Q 003201 208 STSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLH 287 (840)
Q Consensus 208 ~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~ 287 (840)
. ..++. ......++..+..++.++|+.|-=+|++++..
T Consensus 172 ~----------~~~~~--------------------------------k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ 209 (278)
T 4ffb_C 172 L----------TNVNV--------------------------------QTFLPELLKHVPQLAGHGDRNVRSQTMNLIVE 209 (278)
T ss_dssp T----------TTCCH--------------------------------HHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHH
T ss_pred C----------CcCCc--------------------------------hhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 0 00000 01123455667778899999999999998876
Q ss_pred ccC
Q 003201 288 LTL 290 (840)
Q Consensus 288 l~~ 290 (840)
+..
T Consensus 210 ly~ 212 (278)
T 4ffb_C 210 IYK 212 (278)
T ss_dssp HHT
T ss_pred HHH
Confidence 643
No 89
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.36 E-value=0.41 Score=55.87 Aligned_cols=298 Identities=17% Similarity=0.173 Sum_probs=172.2
Q ss_pred CCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcC-CChhHHHHHHHHHHHHHhhccCcch-----HHHHH--
Q 003201 145 KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLND-PDPQVVANCLSALQEIWSLEASTSE-----EASRE-- 216 (840)
Q Consensus 145 ~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D-~d~~Vv~~al~~L~eI~~~~~~~~~-----~~~~~-- 216 (840)
+..-.-=||.|+.++-.+-+.+|..+...++...+.. |-+| .|.-++..++-.|.-+...++.... +...+
T Consensus 32 ~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~-L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~ 110 (651)
T 3grl_A 32 SSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHV-LQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLG 110 (651)
T ss_dssp HCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHH-HHSCTTCHHHHHHHHHHHHHHHCCC--------------CHH
T ss_pred hccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHH-HhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHH
Confidence 3445677999999999999999998754444444444 3566 5778888888877665432221000 00000
Q ss_pred HH----hhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHH-H------HHHHHHHhccCChHHHHHHHHHH
Q 003201 217 RE----ALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD-I------MNLLEDRLQHANGAVVLSTIKVF 285 (840)
Q Consensus 217 ~~----~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~-i------l~~l~~~L~~~n~aVvleaik~i 285 (840)
.| ..-.+..+.-|++.+...+.|.....+++|...+...+++..+ | +..+...|......+.-|++-++
T Consensus 111 ~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL 190 (651)
T 3grl_A 111 SQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLL 190 (651)
T ss_dssp HHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHH
Confidence 00 1112345667888888899999999999998877655554332 2 45677788888888889999999
Q ss_pred HhccCCCchhHHHH-HHHHHHHHHHhhcCCCc----hhHHHHHHHHHHHHhhCC---Ccccc-----cccEEEEccCCCH
Q 003201 286 LHLTLSMTDVHQQV-YERIKAPLLTLVSSGSP----EQSYAVLSHLHILVMRAP---FIFAS-----DYKHFYCQYNEPS 352 (840)
Q Consensus 286 l~l~~~~~~~~~~~-l~rl~~~L~~lLss~~~----nirY~aL~~l~~l~~~~p---~~~~~-----~~~~f~c~~~dp~ 352 (840)
..++..++++++-+ ++.+...|..++.+... .+--=.|..+.-|++.+| .+|.. .+..++- .+++.
T Consensus 191 ~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~-~~~~~ 269 (651)
T 3grl_A 191 QALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFE-VGDEN 269 (651)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGC-CCSCS
T ss_pred HHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhC-CCccc
Confidence 99998887765422 23445556666653222 232333444555555443 12221 1111110 11111
Q ss_pred ------HH--HHHHHHHHHhccCCCCHH-------------HHHHHHHHhhhc--CCHHHHHHHHHHHHHHHhhcCChH-
Q 003201 353 ------YV--KKLKLEMLTAVANESNTY-------------EIVTELCEYAAN--VDIPIARESIRAVGKIALQQYDVN- 408 (840)
Q Consensus 353 ------~I--K~~kLdiL~~L~n~~Nv~-------------~Iv~EL~~y~~~--~d~~~~~~~i~aI~~la~k~~~~~- 408 (840)
-+ -...|+++-.|+.+.|-. .++..|...+.. ....++.++++++|.+....+...
T Consensus 270 ~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~ 349 (651)
T 3grl_A 270 SGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQD 349 (651)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 12 224788888888886631 145556666554 467888999999998776543211
Q ss_pred --------------HHHHHHHHHhhhcC-chhhHHHHHHHHHHHhhCCCcc
Q 003201 409 --------------AIVDRLLQFLEMEK-DYVTAEALVLVKDLLRKYPQWS 444 (840)
Q Consensus 409 --------------~~v~~Ll~LL~~~~-~~v~~e~v~~i~~il~~~p~~~ 444 (840)
..+..++.++.... -.+.-+++..++-.+.++++.+
T Consensus 350 ~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q 400 (651)
T 3grl_A 350 YFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQ 400 (651)
T ss_dssp HHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHH
Confidence 12222333332222 1244555666666666665544
No 90
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.04 E-value=0.14 Score=59.74 Aligned_cols=254 Identities=16% Similarity=0.121 Sum_probs=147.7
Q ss_pred hccCCCcchHHHHHHHHHHhccCCCch-----HHHHHHHHHhhcCCCChhhHhHHHHHhhCCChhh--------------
Q 003201 71 CSATSDIVLKKMCYLYVGNYAKVNPDL-----ALLTINFLQRDCKDEDPMIRGLALRSLCSLRVAN-------------- 131 (840)
Q Consensus 71 l~~S~d~~~KkL~YLyl~~~~~~~~dl-----~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~-------------- 131 (840)
+-.+.-++.||=.-+.+.-+++..++. +--.+++|++|-. |..+...+|-+|.++-.++
T Consensus 30 l~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~--D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~ 107 (651)
T 3grl_A 30 VASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRS--DSEIIGYALDTLYNIISNDEEEEVEENSTRQSE 107 (651)
T ss_dssp HHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTT--CHHHHHHHHHHHHHHHCCC--------------
T ss_pred HhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccc--cHHHHHHHHHHHHHHhCCCCcccccccccccch
Confidence 334556667777777777777666653 3355777777753 3344444777765531110
Q ss_pred -----hHH------HHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcc-----cCCCchHHHHHHHhcCCChhHHHHH
Q 003201 132 -----LVE------YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC-----IDADFPPTLKHLMLNDPDPQVVANC 195 (840)
Q Consensus 132 -----i~e------~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~-----~~~~~~~~L~~lLL~D~d~~Vv~~a 195 (840)
+++ .-++.+..+|...+.|||-.|+.++--+....|+.+ ..+.-++.|.++ |+|+.-.+...|
T Consensus 108 ~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l-L~d~rE~iRnea 186 (651)
T 3grl_A 108 DLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL-LADSREVIRNDG 186 (651)
T ss_dssp CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG-GGCSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH-HhCchHHHHHHH
Confidence 222 225667788899999999999999999988887732 246778899997 788888888889
Q ss_pred HHHHHHHHhhccCcchHHHHHHHhhccH-HHHHHHHHhhccCC--h--hHHHHHHHHHHhcCCCChh--HHHH---HHHH
Q 003201 196 LSALQEIWSLEASTSEEASREREALISK-PVIYYLLNRIKEFS--E--WAQCLVLELVAKYVPLDSN--EIFD---IMNL 265 (840)
Q Consensus 196 l~~L~eI~~~~~~~~~~~~~~~~~li~~-~~~~~Ll~~l~~~~--~--W~Qi~iL~lL~~y~p~~~~--e~~~---il~~ 265 (840)
+.+|.++.+.++.+ ..++.. ..+.+|++.+..-. + -..--.|.++..+...++. ..+. .+..
T Consensus 187 llLL~~Lt~~n~~i--------QklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~ 258 (651)
T 3grl_A 187 VLLLQALTRSNGAI--------QKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQR 258 (651)
T ss_dssp HHHHHHHHTTCHHH--------HHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGG
T ss_pred HHHHHHHhcCCHHH--------HHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHH
Confidence 99999999876532 112211 24566666554321 1 1122233333333332321 1111 2333
Q ss_pred HHHHhcc------------CChHHHHHHHHHHHhccCCC--chhHHHHHH--HHHHHHHHhhcCC--CchhHHHHHHHHH
Q 003201 266 LEDRLQH------------ANGAVVLSTIKVFLHLTLSM--TDVHQQVYE--RIKAPLLTLVSSG--SPEQSYAVLSHLH 327 (840)
Q Consensus 266 l~~~L~~------------~n~aVvleaik~il~l~~~~--~~~~~~~l~--rl~~~L~~lLss~--~~nirY~aL~~l~ 327 (840)
+.++|.. .|-.-+++++++++.=.... ....+..+. .+..+|++++.+. ...++-.+|..+.
T Consensus 259 L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla 338 (651)
T 3grl_A 259 MKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVS 338 (651)
T ss_dssp GGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred HHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 4444432 12233566777666432210 111222222 2455777877543 5678888999999
Q ss_pred HHHhhCCC
Q 003201 328 ILVMRAPF 335 (840)
Q Consensus 328 ~l~~~~p~ 335 (840)
.++..+|.
T Consensus 339 ~~irgN~~ 346 (651)
T 3grl_A 339 EVIRGCQV 346 (651)
T ss_dssp HHHTTCHH
T ss_pred HHHhCCHH
Confidence 88876663
No 91
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.32 E-value=1.1 Score=46.72 Aligned_cols=170 Identities=15% Similarity=0.134 Sum_probs=100.1
Q ss_pred hHhHHHHHhhC---CChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHH
Q 003201 116 IRGLALRSLCS---LRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVV 192 (840)
Q Consensus 116 ir~LALr~l~~---I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv 192 (840)
.+...|+..-. -..|++.+.+.+.+.....|++..|||-.+-=+...++..++.+ ...++.|..+ ++|.|+.|+
T Consensus 31 ~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~--~~~l~~L~~L-l~d~d~~V~ 107 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL--PHVINVVSML-LRDNSAQVI 107 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHH-TTCSCHHHH
T ss_pred HHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-HcCCCHHHH
Confidence 45444444433 24577777888888887777788888887777777777777776 5566777765 678888877
Q ss_pred HHHHHHHHHHHh-------hccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcC----CC--C----
Q 003201 193 ANCLSALQEIWS-------LEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV----PL--D---- 255 (840)
Q Consensus 193 ~~al~~L~eI~~-------~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~----p~--~---- 255 (840)
-.++.+...|.+ .+++.. +.+...|..+.. +=.++++.+...++=..+..++++.++. +. +
T Consensus 108 K~~I~~~~~iY~~~l~~i~~~~~~~-~~~~~~W~~m~~-lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~ 185 (257)
T 3gs3_A 108 KRVIQACGSIYKNGLQYLCSLMEPG-DSAEQAWNILSL-IKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKR 185 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCC-HHHHHHHHHHHH-HHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCc-chHHHHHHHHHH-HHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCC
Confidence 666655544422 122111 011123332221 2234455555566667777787777642 11 0
Q ss_pred ---------------------hhHHHHHHHHHHHHhccC--ChHHHHHHHHHHHhccC
Q 003201 256 ---------------------SNEIFDIMNLLEDRLQHA--NGAVVLSTIKVFLHLTL 290 (840)
Q Consensus 256 ---------------------~~e~~~il~~l~~~L~~~--n~aVvleaik~il~l~~ 290 (840)
+.|+..+++.+...+.+. ++..+.++++++..+..
T Consensus 186 ~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak 243 (257)
T 3gs3_A 186 DGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAK 243 (257)
T ss_dssp TTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHH
Confidence 145667778777776654 34455566666655543
No 92
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=95.23 E-value=0.35 Score=53.29 Aligned_cols=186 Identities=12% Similarity=0.115 Sum_probs=111.0
Q ss_pred hHhHHHHHhhCC---ChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHH
Q 003201 116 IRGLALRSLCSL---RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVV 192 (840)
Q Consensus 116 ir~LALr~l~~I---~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv 192 (840)
.+...|+.+-.+ +.|++.+.+++.|.....|++..|||..+-=+...+..+++.+ ...++.|..+ ++|.|+.|+
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~--~~~l~~L~~L-L~d~d~~V~ 117 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL--LKLIANLNML-LRDENVNVV 117 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHH-HTCSSHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-HcCCCHHHH
Confidence 455555555553 4577888888888888888899999998888888888888877 5677778776 688888887
Q ss_pred HHHHHHHHHHHh-------hccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcC----CC--C----
Q 003201 193 ANCLSALQEIWS-------LEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV----PL--D---- 255 (840)
Q Consensus 193 ~~al~~L~eI~~-------~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~----p~--~---- 255 (840)
-.++.+...|.+ .++... +.+...|..+.. +-..+++.+...++=..+..++++.++. +. +
T Consensus 118 K~~I~~~tslYpl~f~~i~~~~~~~-~~~e~~W~~m~~-lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p 195 (386)
T 3o2t_A 118 KKAILTMTQLYKVALQWMVKSRVIS-ELQEACWDMVSA-MAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIP 195 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CCC-HHHHHHHHHHHH-HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcc-hhHHHHHHHHHH-HHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccc
Confidence 666655544421 122110 001122333221 2334455455556666777777777632 21 1
Q ss_pred ------------------------hhHHHHHHHHHHHHhccC--ChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHH
Q 003201 256 ------------------------SNEIFDIMNLLEDRLQHA--NGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLT 309 (840)
Q Consensus 256 ------------------------~~e~~~il~~l~~~L~~~--n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~ 309 (840)
+.|+..+++.+...+++. ++..+..+++++..+...-|. ...++.+.|.+
T Consensus 196 ~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~----~~~rIl~aL~~ 271 (386)
T 3o2t_A 196 RRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPM----FMSEVIQAYET 271 (386)
T ss_dssp GGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGG----GHHHHHHHHHH
T ss_pred cccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHH----HHHHHHHHHHh
Confidence 135667788888877752 344555566665555433332 23445555544
Q ss_pred h
Q 003201 310 L 310 (840)
Q Consensus 310 l 310 (840)
+
T Consensus 272 l 272 (386)
T 3o2t_A 272 L 272 (386)
T ss_dssp H
T ss_pred h
Confidence 3
No 93
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=95.13 E-value=0.082 Score=55.66 Aligned_cols=111 Identities=13% Similarity=0.134 Sum_probs=70.1
Q ss_pred eeccCCCCChHHHHHHhhccCcccceeeeeCccCccCCCCHHHHHHHhhhcCEEEEeecCCCCceEEEEeee-cc-CCCc
Q 003201 720 KLNSKAILDPGTFQQKWRQLPISLSQEFSLSPEGVAALTTPQALLWHMQGHSIHCIASGGHSPNFKFFFFAQ-KA-EESS 797 (840)
Q Consensus 720 ~L~~~~~l~~~~Fq~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~I~tiAsg~~~~~~k~y~yaq-~~-~~~~ 797 (840)
+|.....|++++|-++|++|+... .|.+-.... ....+.+.+.+.+...|...+- |..+.+..++..+. ++ +++.
T Consensus 159 kf~~p~~~~~~~F~~rWkql~~~~-~E~q~v~~~-~~~~~~~~v~~~l~~lg~~vl~-g~Dpn~~n~v~AGi~~t~~g~~ 235 (273)
T 3hs8_A 159 KFFQPTEMASQDFFQRWKQLSNPQ-QEVQNIFKA-KHPMDTEITKAKIIGFGSALLE-EVDPNPANFVGAGIIHTKTTQI 235 (273)
T ss_dssp GGEEECCCCHHHHHHHHHHCCSGG-GEEEEEEEC-SSCCCHHHHHHHHHHHTCEECT-TSSSSTTSEEEEEEEECSSCEE
T ss_pred heeccccCCHHHHHHHHHhcCCCC-ceEEEEecC-CCCCCHHHHHHHHHhCCeEEeC-CCCCCcccEEEEEEEEeCCCCE
Confidence 344446699999999999998321 222211111 1235789999999999988886 43222233442221 11 1344
Q ss_pred eEEEEEEEecCCCceEEEEecCChhhHHHHHHHHHH
Q 003201 798 NFLVECIINTSSAKAQVKIKADDQSTSQAFSDVFQS 833 (840)
Q Consensus 798 ~fL~El~i~~~~~~~~~tvKs~~~~~~~~f~~~~~~ 833 (840)
-+|+-+-.+.....+++||||.++...+...+++++
T Consensus 236 gcLvRle~n~~~~~~rlTVRSt~~~vs~~i~~~i~~ 271 (273)
T 3hs8_A 236 GCLLRLEPNLQAQMYRLTLRTSKDTVSQRLCELLSE 271 (273)
T ss_dssp EEEEEEEEETTTTEEEEEEEESSHHHHHHHHHHHHT
T ss_pred EEEEEEEEcccCCEEEEEEEECChhHHHHHHHHHHh
Confidence 455555555567899999999999887777776654
No 94
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=95.04 E-value=0.26 Score=50.63 Aligned_cols=168 Identities=10% Similarity=-0.012 Sum_probs=100.2
Q ss_pred HHHHHhccCCCCh--HHHHHHHHHHHHHHhhcCC---cccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcch
Q 003201 137 VGPLGLGLKDNNS--YVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSE 211 (840)
Q Consensus 137 ~~~v~~~L~d~~p--yVRK~Aala~~kl~~~~p~---~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~ 211 (840)
++.+.+.|.++++ -|+..|+.++..+...+++ .+.+.+.++.|.++ |...++.|...|+.+|..|...++.
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~l-L~s~~~~vq~~Aa~aL~nLa~~~~~--- 85 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQL-LKVQNEDVQRAVCGALRNLVFEDND--- 85 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHG-GGCCCHHHHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHH-HcCCCHHHHHHHHHHHHHHHhCCHH---
Confidence 5667778888877 8888888888887765543 33456778899997 6888999999999999999764321
Q ss_pred HHHHHHHhhccHHHHHHHHHhhcc-CChhHHHHHHHHHHhcCCCChhHHHHHHHH-HHHHhc------------------
Q 003201 212 EASREREALISKPVIYYLLNRIKE-FSEWAQCLVLELVAKYVPLDSNEIFDIMNL-LEDRLQ------------------ 271 (840)
Q Consensus 212 ~~~~~~~~li~~~~~~~Ll~~l~~-~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~-l~~~L~------------------ 271 (840)
++ ........+..|++.+.. .++-.|-.....|..+.-.+ +....|++- +.++.+
T Consensus 86 --nk--~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~ 160 (233)
T 3tt9_A 86 --NK--LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNLMITEALLTLTENIIIPFSGWPEGDYPKAN 160 (233)
T ss_dssp --HH--HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred --HH--HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHHHHhccHHHHHHHHhccccCCccccccccc
Confidence 11 111112235555555553 34445555554454443222 222223221 111111
Q ss_pred -cCChHHHHHHHHHHHhccCCCchhHHHHHH--HHHHHHHHhhcC
Q 003201 272 -HANGAVVLSTIKVFLHLTLSMTDVHQQVYE--RIKAPLLTLVSS 313 (840)
Q Consensus 272 -~~n~aVvleaik~il~l~~~~~~~~~~~l~--rl~~~L~~lLss 313 (840)
+.++.|...|+.++..+....++.++.+.+ .++.+|+.++.+
T Consensus 161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~ 205 (233)
T 3tt9_A 161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRG 205 (233)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHh
Confidence 124578888999998887654444443332 366777777753
No 95
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=94.90 E-value=11 Score=47.08 Aligned_cols=176 Identities=11% Similarity=0.121 Sum_probs=97.9
Q ss_pred HHHHHhhCCChhhhHHHHHHHHHhccCC--CChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHH
Q 003201 119 LALRSLCSLRVANLVEYLVGPLGLGLKD--NNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCL 196 (840)
Q Consensus 119 LALr~l~~I~~~~i~e~l~~~v~~~L~d--~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al 196 (840)
-.|-.++++..+++.+.+.+.+.+.+.+ .+...|=+|++|+.-+-.- +. .+.... .+..++
T Consensus 435 d~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~-~~-------~~~e~~---------~l~~vi 497 (1023)
T 4hat_C 435 EVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGT-MS-------EDTEKR---------FVVTVI 497 (1023)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTS-SC-------HHHHHH---------HHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcC-CC-------chhHHH---------HHHHHH
Confidence 5667777788888888888888887765 5788888888888865431 11 011111 222233
Q ss_pred HHHHHHHhhccCcchHHHHHHHhhccHHHHH-HHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhccCCh
Q 003201 197 SALQEIWSLEASTSEEASREREALISKPVIY-YLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANG 275 (840)
Q Consensus 197 ~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~-~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~~~n~ 275 (840)
..|..+..+..+. + .+..++ ..+-.++.+.+|... +++-...+++.+...+...++
T Consensus 498 ~~Ll~l~~~~~~~------d-----~k~~v~~t~~~~lGry~~wl~~------------~~~~L~~vl~~L~~~l~~~~~ 554 (1023)
T 4hat_C 498 KDLLDLCVKKRGK------D-----NKAVVASDIMYVVGQYPRFLKA------------HWNFLRTVILKLFEFMHETHE 554 (1023)
T ss_dssp HHHHHHHHHCCSH------H-----HHHHHHHHHHHHHHTCHHHHHH------------CHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHhhhccccC------c-----chHHHHHHHHHHHHHHHHHHhc------------cHHHHHHHHHHHHHHhhcCCH
Confidence 3333443221110 0 011122 233445666777632 344455667777777766777
Q ss_pred HHHHHHHHHHHhccCCCc-hhH-------HHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhCC
Q 003201 276 AVVLSTIKVFLHLTLSMT-DVH-------QQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP 334 (840)
Q Consensus 276 aVvleaik~il~l~~~~~-~~~-------~~~l~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~p 334 (840)
.|.-.|+.+|..+...-. .+. ...+..+...+......-+++-+..+.+.+..+++..|
T Consensus 555 ~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 555 GVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 888888888776642211 000 00122233333344444466777888888888887765
No 96
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=94.83 E-value=2 Score=53.33 Aligned_cols=122 Identities=11% Similarity=0.074 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhccCCCchHHH----HHHHHHhh-cC---CCChhhHhHHHHHhhCCChh------------hhHHHHHHH
Q 003201 80 KKMCYLYVGNYAKVNPDLALL----TINFLQRD-CK---DEDPMIRGLALRSLCSLRVA------------NLVEYLVGP 139 (840)
Q Consensus 80 KkL~YLyl~~~~~~~~dl~lL----~iNtl~KD-l~---~~Np~ir~LALr~l~~I~~~------------~i~e~l~~~ 139 (840)
|+++ ...-.++...+++.+- .+..+.+. +. +.+-..+=.||..|+.++.- ...+.+.+.
T Consensus 416 k~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~l 494 (980)
T 3ibv_A 416 KKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQI 494 (980)
T ss_dssp HHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHH
T ss_pred HHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHH
Confidence 5566 6666777778888766 44443333 32 23445667888887665321 122344555
Q ss_pred HHhccC-----CCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhc-----CCChhHHHHHHHHHHHHHhh
Q 003201 140 LGLGLK-----DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLN-----DPDPQVVANCLSALQEIWSL 205 (840)
Q Consensus 140 v~~~L~-----d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~-----D~d~~Vv~~al~~L~eI~~~ 205 (840)
+.+++. +++|.||.+++.++.|....... .+++++.+...+++ ++++.|..+|..+|..+++.
T Consensus 495 l~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~---~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~ 567 (980)
T 3ibv_A 495 LALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY---ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKS 567 (980)
T ss_dssp HHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT---CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHH
Confidence 555543 88999999999999998776433 24455544444344 68889999999999998764
No 97
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=94.79 E-value=0.84 Score=47.51 Aligned_cols=125 Identities=15% Similarity=0.233 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHHHHHhcCCCccchhhhh----hhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhh
Q 003201 41 DDSKRELFKKVISYMTIGIDVSAVFGEM----VMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMI 116 (840)
Q Consensus 41 ~~~kk~~lkKlI~~m~lG~DvS~lF~~V----i~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~i 116 (840)
++.|.+.++++=-+...+ |.+ +++++ +.+...++.++||.+==++......
T Consensus 29 ~~~kl~~L~qa~el~~~~-dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~----------------------- 83 (257)
T 3gs3_A 29 PSTKCELLAKVQETVLGS-CAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV----------------------- 83 (257)
T ss_dssp HHHHHHHHHHHHHHHTTT-TGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-----------------------
T ss_pred cHHHHHHHHHHHHHHHcc-CHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-----------------------
Confidence 368999999988777665 444 55555 4555667888888877666555422
Q ss_pred HhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhc-------CCcc--cCCCc------hHHHHH
Q 003201 117 RGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS-------APTC--IDADF------PPTLKH 181 (840)
Q Consensus 117 r~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~-------p~~~--~~~~~------~~~L~~ 181 (840)
.++++..+++.+..+|.|.+|.|-|+|+.|...+|+.- |..- .+.-| -+.+.+
T Consensus 84 ------------k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~ 151 (257)
T 3gs3_A 84 ------------KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILD 151 (257)
T ss_dssp ------------CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHH
Confidence 23566677777788888889999999999998888742 2110 00112 234445
Q ss_pred HHhcCCChhHHHHHHHHHHHHH
Q 003201 182 LMLNDPDPQVVANCLSALQEIW 203 (840)
Q Consensus 182 lLL~D~d~~Vv~~al~~L~eI~ 203 (840)
+ .+..|.+|..+|+-.+..+.
T Consensus 152 ~-~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 152 M-IDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp G-GGSSCHHHHHHHHHHHHHHH
T ss_pred H-HccCCcchHHHHHHHHHHHH
Confidence 4 46789999999999888865
No 98
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.29 E-value=0.33 Score=50.84 Aligned_cols=188 Identities=11% Similarity=0.020 Sum_probs=113.9
Q ss_pred CCCCCCCCcHHHHHHHHHhhhcCCC-----CCChHHHHHHHHHHHHHHhcCCCc----cch-hhhhh-hhccCCCcchHH
Q 003201 13 PSQPSGKGEVSDLKSQLRQLAGSRA-----PGIDDSKRELFKKVISYMTIGIDV----SAV-FGEMV-MCSATSDIVLKK 81 (840)
Q Consensus 13 ~~~~~~k~Ei~elr~~L~~~~~~~~-----~~~~~~kk~~lkKlI~~m~lG~Dv----S~l-F~~Vi-~l~~S~d~~~Kk 81 (840)
.+.+.....+..|++++....+..- ..+-..+.+++..+.-......+- ..+ |.-+. .+. ++|...=.
T Consensus 27 ~f~~p~~e~v~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~-d~N~~v~~ 105 (266)
T 2of3_A 27 NFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFF-ETNPAALI 105 (266)
T ss_dssp CCSSCCHHHHHHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTT-SCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHh-CCCHHHHH
Confidence 3344444556668887776411000 023345666666666554432211 111 22111 233 34544333
Q ss_pred HHHHHHHHh----ccC----CCchHHHHHHHHHhhcCCCChhhHhHHH---HHhhCCChhhhHHHHHHHHHhccCCCChH
Q 003201 82 MCYLYVGNY----AKV----NPDLALLTINFLQRDCKDEDPMIRGLAL---RSLCSLRVANLVEYLVGPLGLGLKDNNSY 150 (840)
Q Consensus 82 L~YLyl~~~----~~~----~~dl~lL~iNtl~KDl~~~Np~ir~LAL---r~l~~I~~~~i~e~l~~~v~~~L~d~~py 150 (840)
-|.=++..+ .+. .+..+-..+-.+.-=+.|+++-+|..+- +.|+.+..+ ..+.+.+..++.++|+.
T Consensus 106 ~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~ksKN~R 182 (266)
T 2of3_A 106 KVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALKSKNAR 182 (266)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHccCCHH
Confidence 333333332 222 2222445667777788999999998764 455544333 34666677899999999
Q ss_pred HHHHHHHHHHHHHhhcCCcccCCCch---HHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Q 003201 151 VRTVAVIGVLKLYHISAPTCIDADFP---PTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (840)
Q Consensus 151 VRK~Aala~~kl~~~~p~~~~~~~~~---~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~ 207 (840)
+|--.+..+..++..+.-.- ...+ +.+..+ +.|+|..|.-+|+.++.++....+
T Consensus 183 ~R~e~l~~l~~li~~~G~~~--~~~l~~~~~ia~l-l~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 183 QRSECLLVIEYYITNAGISP--LKSLSVEKTVAPF-VGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HHHHHHHHHHHHHHHHCSGG--GGGGCHHHHHGGG-GGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCc--cccccchHHHHHH-HcCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999988765442 3467 888887 799999999999999999977554
No 99
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=93.14 E-value=22 Score=45.08 Aligned_cols=92 Identities=12% Similarity=0.009 Sum_probs=54.4
Q ss_pred ChhhHhHHHHHhhCCChh-hhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCccc---CCCchHHHHHHHhcC--
Q 003201 113 DPMIRGLALRSLCSLRVA-NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI---DADFPPTLKHLMLND-- 186 (840)
Q Consensus 113 Np~ir~LALr~l~~I~~~-~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~---~~~~~~~L~~lLL~D-- 186 (840)
++..|.-|-..|-.+... +....+...+. -.+.+++||--|+..+-+..+.+=..+. ...+-+.+..++...
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~ 103 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKCPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTL 103 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSC
T ss_pred ChHHHHHHHHHHHHHHhCchHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhcc
Confidence 677888888888776443 34444444333 2566899999999998887654211111 122233444443322
Q ss_pred ----CChhHHHHHHHHHHHHHhhc
Q 003201 187 ----PDPQVVANCLSALQEIWSLE 206 (840)
Q Consensus 187 ----~d~~Vv~~al~~L~eI~~~~ 206 (840)
.++.|......++.+|.+.+
T Consensus 104 ~~~~~~~~vr~kla~~la~Ia~~d 127 (1204)
T 3a6p_A 104 NILEEENHIKDALSRIVVEMIKRE 127 (1204)
T ss_dssp CTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHh
Confidence 35666666666778887654
No 100
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=92.79 E-value=9.2 Score=43.03 Aligned_cols=332 Identities=10% Similarity=0.070 Sum_probs=163.8
Q ss_pred CchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHH----HHHHHHHH
Q 003201 174 DFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQ----CLVLELVA 249 (840)
Q Consensus 174 ~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Q----i~iL~lL~ 249 (840)
.....+..+|-..++..++...+.++.++...+| +.+..-.. +.-++.....++......++|.. ..++.++.
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~--~~~~~~~~-f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~ 153 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDK--YGDDTVKF-FQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLV 153 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSS--SSHHHHHH-HHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCc--chHHHHHH-HhhCcccchHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 3445566664457788899999999999987665 10000000 11112223345554445666665 34444454
Q ss_pred hcCCCChhHHHHHHH--HHHHHhccC-ChHHHHHHHHHHHhccCCCchhHHHHHH---HHHHHH----HHhhcCC-----
Q 003201 250 KYVPLDSNEIFDIMN--LLEDRLQHA-NGAVVLSTIKVFLHLTLSMTDVHQQVYE---RIKAPL----LTLVSSG----- 314 (840)
Q Consensus 250 ~y~p~~~~e~~~il~--~l~~~L~~~-n~aVvleaik~il~l~~~~~~~~~~~l~---rl~~~L----~~lLss~----- 314 (840)
...+.+.+....+++ .+...|++. +....+-|++++-.+-.. +.......+ ...+++ .+.+.++
T Consensus 154 ~~~~~~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~ 232 (480)
T 1ho8_A 154 QNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRI 232 (480)
T ss_dssp STTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred ccCCccHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence 444555555566666 455566552 333345556655433221 111111110 122333 2232211
Q ss_pred --------CchhHHHHHHHHHHHHhhCCC----ccccccc---EE--EEccCCCHHHHHHHHHHHHhccCCC--CHHHHH
Q 003201 315 --------SPEQSYAVLSHLHILVMRAPF----IFASDYK---HF--YCQYNEPSYVKKLKLEMLTAVANES--NTYEIV 375 (840)
Q Consensus 315 --------~~nirY~aL~~l~~l~~~~p~----~~~~~~~---~f--~c~~~dp~~IK~~kLdiL~~L~n~~--Nv~~Iv 375 (840)
...++|-++-.+=.+.- .|. +...++. .+ .++...-.-|=|..+-+|..+.+.. +-...+
T Consensus 233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~ 311 (480)
T 1ho8_A 233 VATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI 311 (480)
T ss_dssp ------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred ccccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHH
Confidence 13346777766654432 221 1111110 01 0222333455666677777777654 122222
Q ss_pred HH------HHHhh------hcCCHHHHHHHHHHHHHHHhhcC---ChHHHHHH-HHHHhhhcCchhhHHHHHHHHHHHhh
Q 003201 376 TE------LCEYA------ANVDIPIARESIRAVGKIALQQY---DVNAIVDR-LLQFLEMEKDYVTAEALVLVKDLLRK 439 (840)
Q Consensus 376 ~E------L~~y~------~~~d~~~~~~~i~aI~~la~k~~---~~~~~v~~-Ll~LL~~~~~~v~~e~v~~i~~il~~ 439 (840)
.+ +...+ .-.|+|+..++-.--..+.+.+- ....|..- ....|+=+..|-.+.-|. .+. ++
T Consensus 312 ~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~--ENa-~k 388 (480)
T 1ho8_A 312 KQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWS--DNI-DE 388 (480)
T ss_dssp HHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHH--HHS-GG
T ss_pred HHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHH--HHH-HH
Confidence 22 11221 12577777665555445554432 22334322 222333333344444443 111 22
Q ss_pred CCCcchhHHHHHHhhhccc--------CCchHHHHHHHHHHcCcCCCCCChHHHHHHH------HHhhccCCcHHHHHHH
Q 003201 440 YPQWSHDCIAVVGSISSQN--------VQEPKAKAALIWMLGEYSQDMQDAPYILESL------TENWEEEPSAEVRLHL 505 (840)
Q Consensus 440 ~p~~~~~~~~~l~~l~~~~--------i~~~~ak~a~iwilGEy~~~i~~~~~il~~l------~~~~~~e~~~~vk~~l 505 (840)
..+-.-..+..|.+++... -.+|...+.++.=||||..+.++...+++.+ .+-...++ ++||-+.
T Consensus 389 f~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d-~~Vr~~A 467 (480)
T 1ho8_A 389 FKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSD-SRVKYEA 467 (480)
T ss_dssp GSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSS-HHHHHHH
T ss_pred HHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCC-HHHHHHH
Confidence 2221112344555555311 2478889999999999999999877776643 23334455 9999999
Q ss_pred HHHHhHHhh
Q 003201 506 LTAVMKCFF 514 (840)
Q Consensus 506 Lta~~Kl~~ 514 (840)
|.|+-|+..
T Consensus 468 L~avQklm~ 476 (480)
T 1ho8_A 468 LKATQAIIG 476 (480)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
No 101
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=92.54 E-value=16 Score=40.99 Aligned_cols=62 Identities=13% Similarity=0.106 Sum_probs=50.2
Q ss_pred HHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 003201 139 PLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (840)
Q Consensus 139 ~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~ 204 (840)
.|..+.+ .++-+++-|+-=+.|.|+.+|+.- ...++.+.+| ..|.|..|...|+..|-.+++
T Consensus 33 ~Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~--~~Ai~a~lDL-cEDed~~IR~qaik~Lp~~ck 94 (507)
T 3u0r_A 33 VILDGVK-GGTKEKRLAAQFIPKFFKHFPELA--DSAINAQLDL-CEDEDVSIRRQAIKELPQFAT 94 (507)
T ss_dssp HHHHGGG-SCHHHHHHHHHHHHHHGGGCGGGH--HHHHHHHHHH-HTCSSHHHHHHHHHHGGGGCC
T ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHH-HhcccHHHHHHHHHhhHHHhh
Confidence 3444333 468999999999999999999987 5678888897 799999999998877766653
No 102
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=92.13 E-value=2.3 Score=46.78 Aligned_cols=190 Identities=17% Similarity=0.218 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcc---chhhhhhhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHh
Q 003201 42 DSKRELFKKVISYMTIGIDVS---AVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRG 118 (840)
Q Consensus 42 ~~kk~~lkKlI~~m~lG~DvS---~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~ 118 (840)
+.|.+.++++=-+... .|-+ .+|.+++.+...++.++||.|==|+..-+..
T Consensus 40 ~~Kl~~L~q~~EL~l~-~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~------------------------- 93 (386)
T 3o2t_A 40 DSKITVLKQVQELIIN-KDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR------------------------- 93 (386)
T ss_dssp THHHHHHHHHHHHHHT-TCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-------------------------
Confidence 4789998887655443 4443 3577777888888999999987777544421
Q ss_pred HHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhh-------cCCcc--cCCCc------hHHHHHHH
Q 003201 119 LALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-------SAPTC--IDADF------PPTLKHLM 183 (840)
Q Consensus 119 LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~-------~p~~~--~~~~~------~~~L~~lL 183 (840)
..+++..+++.+..+|.|.++.|-|+|+.|...+|+. +|..- .+.-| -+.+..+
T Consensus 94 ----------~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~- 162 (386)
T 3o2t_A 94 ----------DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILL- 162 (386)
T ss_dssp ----------CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHG-
T ss_pred ----------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHH-
Confidence 3556667777777788889999999999999888853 22210 00113 2345554
Q ss_pred hcCCChhHHHHHHHHHHHHHh--h----cc--------CcchHHHHHHHhhccHH--------HHHHHHHhhcc--CChh
Q 003201 184 LNDPDPQVVANCLSALQEIWS--L----EA--------STSEEASREREALISKP--------VIYYLLNRIKE--FSEW 239 (840)
Q Consensus 184 L~D~d~~Vv~~al~~L~eI~~--~----~~--------~~~~~~~~~~~~li~~~--------~~~~Ll~~l~~--~~~W 239 (840)
.+..|.+|..+|+-.+..+.- . ++ +.....+|....+++++ ++..|++.+.. .+++
T Consensus 163 ~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~ 242 (386)
T 3o2t_A 163 LDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSI 242 (386)
T ss_dssp GGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHH
T ss_pred hccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccH
Confidence 567889999999998887652 1 10 11111222222223322 44555555543 4666
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 003201 240 AQCLVLELVAKYVPLDSNEIFDIMNLLED 268 (840)
Q Consensus 240 ~Qi~iL~lL~~y~p~~~~e~~~il~~l~~ 268 (840)
.-+.+|..|......-+.-...+++.+..
T Consensus 243 ~l~a~lnsLa~Iak~RP~~~~rIl~aL~~ 271 (386)
T 3o2t_A 243 NLTTALGSLANIARQRPMFMSEVIQAYET 271 (386)
T ss_dssp HHHHHHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 66777777777666666666667766654
No 103
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A
Probab=92.12 E-value=0.8 Score=47.41 Aligned_cols=112 Identities=13% Similarity=0.132 Sum_probs=68.6
Q ss_pred eeccCCCCChHHHHHHhhccCcccceeeeeCccCccCCCCHHHHHHHhhhcCEEEEeecCCCCceEEEEeee-ccCC-Cc
Q 003201 720 KLNSKAILDPGTFQQKWRQLPISLSQEFSLSPEGVAALTTPQALLWHMQGHSIHCIASGGHSPNFKFFFFAQ-KAEE-SS 797 (840)
Q Consensus 720 ~L~~~~~l~~~~Fq~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~I~tiAsg~~~~~~k~y~yaq-~~~~-~~ 797 (840)
+|-+-..|++++|-++|+++.... .|.+...... ...+...+...+...|+..+. |--+.+.-++--+. +..+ +.
T Consensus 133 KF~~p~~~~~~~Ff~rW~~l~~~~-~E~q~~f~~~-~~~~~~~~~~~l~gf~~~vl~-~vDpn~~niv~agi~~t~~~~~ 209 (247)
T 1kyf_A 133 KFFQPTEMASQDFFQRWKQLSNPQ-QEVQNIFKAK-HPMDTEITKAKIIGFGSALLE-EVDPNPANFVGAGIIHTKTTQI 209 (247)
T ss_dssp GGEEECCCCHHHHHHHHTTCCSGG-GEEEEEEECS-SCCCHHHHHHHHHHHTSEEEC-SSSSSTTSEEEEEEEECSSCEE
T ss_pred EeecCCcCCHHHHHHHHHhccCCC-ceeEEEeccC-CCcCHHHHHHHHhcCCeEEee-CCCCCcCcEEEEEEEEcCCCcE
Confidence 455556699999999999998653 2333211111 135788889999988877776 42111112222221 1111 23
Q ss_pred eEEEEEEEecCCCceEEEEecCChhhHHHHHHHHHHH
Q 003201 798 NFLVECIINTSSAKAQVKIKADDQSTSQAFSDVFQSA 834 (840)
Q Consensus 798 ~fL~El~i~~~~~~~~~tvKs~~~~~~~~f~~~~~~~ 834 (840)
-.|+=+--+.....+++||||.++..+....+++.+.
T Consensus 210 gcLlRlE~n~~~~~~rltvRss~~~vs~~l~~ll~~~ 246 (247)
T 1kyf_A 210 GCLLRLEPNLQAQMYRLTLRTSKDTVSQRLCELLSEQ 246 (247)
T ss_dssp EEEEEEEEETTTTEEEEEEEESSHHHHHHHHHHHHTT
T ss_pred EEEEEEEEcCcCCEEEEEEEECChHHHHHHHHHHHhh
Confidence 3344333456667799999999998888888777654
No 104
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=90.58 E-value=41 Score=41.75 Aligned_cols=116 Identities=17% Similarity=0.186 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCC--------Ch---hhhHHHHHHHHHhccCCC
Q 003201 79 LKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL--------RV---ANLVEYLVGPLGLGLKDN 147 (840)
Q Consensus 79 ~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I--------~~---~~i~e~l~~~v~~~L~d~ 147 (840)
.|+-+.-++..+- .+|+....+..-+.+ +.++.+|-.|+.++-+. .. ..+-+.+...+.+...++
T Consensus 32 ~r~~A~~~L~~~q-~sp~aw~~~~~iL~~---s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~ 107 (1023)
T 4hat_C 32 QQKQAQEILTKFQ-DNPDAWQKADQILQF---STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDD 107 (1023)
T ss_dssp HHHHHHHHHHHHH-HCTTGGGGHHHHHHH---CCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHH-cCccHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 4555555555442 234433333333321 33555555555554432 11 123344444454443333
Q ss_pred -----ChHHHHHHHHHHHHHHhh-cCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHH
Q 003201 148 -----NSYVRTVAVIGVLKLYHI-SAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEI 202 (840)
Q Consensus 148 -----~pyVRK~Aala~~kl~~~-~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI 202 (840)
.++||.|.+.++..+++. +|+.- +++++.+..+ +.. ++...-.++..|..+
T Consensus 108 ~~i~~~~~i~nKLa~~la~I~~~~~p~~W--p~~l~dL~~~-l~~-~~~~~~~~L~iL~~L 164 (1023)
T 4hat_C 108 EVFKTQKNLINKSDLTLVQILKQEWPQNW--PEFIPELIGS-SSS-SVNVCENNMIVLKLL 164 (1023)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTTTTC--TTHHHHHHHH-TTT-CHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHhChhhc--hHHHHHHHHH-hcC-CHHHHHHHHHHHHHH
Confidence 589999999999999875 57665 6777778776 443 444444445555443
No 105
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=90.25 E-value=5.4 Score=40.74 Aligned_cols=132 Identities=12% Similarity=-0.022 Sum_probs=89.9
Q ss_pred CCCChhhHhHHHHHhhCCChhhhHHHHHHHHHh-ccCCCChHHHHHHHHHHHHHHh-hcCCcccCCCchHHHHHHHhcCC
Q 003201 110 KDEDPMIRGLALRSLCSLRVANLVEYLVGPLGL-GLKDNNSYVRTVAVIGVLKLYH-ISAPTCIDADFPPTLKHLMLNDP 187 (840)
Q Consensus 110 ~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~-~L~d~~pyVRK~Aala~~kl~~-~~p~~~~~~~~~~~L~~lLL~D~ 187 (840)
+|+...+|++|...++.. . .. +.+.+.++. ...|++-.||-.++.++.++.. .+|+. .++.+... ..|+
T Consensus 81 ~~~~deVR~~Av~lLg~~-~-~~-~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-----~l~~~~~W-~~d~ 151 (240)
T 3l9t_A 81 QSDVYQVRMYAVFLFGYL-S-KD-KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-----ALPIIDEW-LKSS 151 (240)
T ss_dssp TCSSHHHHHHHHHHHHHT-T-TS-HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-----THHHHHHH-HHCS
T ss_pred hCcchHHHHHHHHHHHhc-c-Cc-HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-----HHHHHHHH-hcCC
Confidence 456679999999999888 3 33 678888887 7789999999999999999996 88874 35677787 6999
Q ss_pred ChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHH-hhccCChhHHHHHHHHHHhcCCCChhHHHH
Q 003201 188 DPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLN-RIKEFSEWAQCLVLELVAKYVPLDSNEIFD 261 (840)
Q Consensus 188 d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~-~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~ 261 (840)
|+-|...|+-.+---+. .+. ...++..+..++. ...+.+.+.|-.|=.-|..|...+|+-..+
T Consensus 152 n~~VRR~Ase~~rpW~~-~~~----------~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~ 215 (240)
T 3l9t_A 152 NLHTRRAATEGLRIWTN-RPY----------FKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKI 215 (240)
T ss_dssp SHHHHHHHHHHTCSGGG-STT----------TTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHhhHHHhc-cch----------hhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHH
Confidence 99998887544321111 111 0112222333333 345677777777777777777767654443
No 106
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=89.83 E-value=1.5 Score=45.83 Aligned_cols=180 Identities=14% Similarity=0.083 Sum_probs=114.0
Q ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHH---HhcCCChhHHHHHHHHHHHHHh----hccC
Q 003201 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHL---MLNDPDPQVVANCLSALQEIWS----LEAS 208 (840)
Q Consensus 136 l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~l---LL~D~d~~Vv~~al~~L~eI~~----~~~~ 208 (840)
+-+.+...|-+++.--|-+|+-.+.+....+|+.+. ..++.+.+. -+.|+|+.|+..++-+|..+.. .++.
T Consensus 47 ~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 47 AKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp BCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 334556667778887788888888888777776541 223333332 1369999999999999888743 1111
Q ss_pred cchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHH---HHHHhcCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHH
Q 003201 209 TSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVL---ELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVF 285 (840)
Q Consensus 209 ~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL---~lL~~y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~i 285 (840)
.....+ ..++..|+.++.+..+=..-.+- +.+....| ...+.+.+..-++|.|+-+.-||+.++
T Consensus 125 ~~~~ea--------~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-----~~~v~~~l~~g~ksKN~R~R~e~l~~l 191 (266)
T 2of3_A 125 MSQEEV--------SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-----PLKMTPMLLDALKSKNARQRSECLLVI 191 (266)
T ss_dssp CCHHHH--------HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-----HHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred chHHHH--------HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 110000 12456788888887654443333 33333222 245667777788999988888888877
Q ss_pred HhccCCC-chhHHHHHHHHH---HHHHHhhcCCCchhHHHHHHHHHHHHhhCCC
Q 003201 286 LHLTLSM-TDVHQQVYERIK---APLLTLVSSGSPEQSYAVLSHLHILVMRAPF 335 (840)
Q Consensus 286 l~l~~~~-~~~~~~~l~rl~---~~L~~lLss~~~nirY~aL~~l~~l~~~~p~ 335 (840)
..+-... ... .+.. +.+..+++++++++|=.|+..+..+-...++
T Consensus 192 ~~li~~~G~~~-----~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 192 EYYITNAGISP-----LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp HHHHHHHCSGG-----GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCc-----cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 6653210 001 1233 6677899999999999999999877655443
No 107
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=89.07 E-value=23 Score=44.25 Aligned_cols=137 Identities=12% Similarity=0.133 Sum_probs=85.2
Q ss_pred cCCCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhc----C---chhhHHHHHHHHHHHh
Q 003201 366 ANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEME----K---DYVTAEALVLVKDLLR 438 (840)
Q Consensus 366 ~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~~~~v~~Ll~LL~~~----~---~~v~~e~v~~i~~il~ 438 (840)
|.++-+..|.+.|.+.+...|.+-+...+++||.++.- ..++.+.+++... . ..|..+++..++.+..
T Consensus 433 c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-----~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~ 507 (1056)
T 1lsh_A 433 CPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-----NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK 507 (1056)
T ss_dssp CCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-----GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG
T ss_pred CCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-----hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh
Confidence 44444566777777777777877778899999998853 2456677776531 1 1244556666666655
Q ss_pred hCCCcchhHHHHHHhhhcccCCchHHHHHHHHHHcCcCCCCCChHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhh
Q 003201 439 KYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFF 514 (840)
Q Consensus 439 ~~p~~~~~~~~~l~~l~~~~i~~~~ak~a~iwilGEy~~~i~~~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~ 514 (840)
.+|.. +-.++-.+..+.-.++++|.++++++=+-. -...++..++.....|++.+|+..+.+.+--+.-
T Consensus 508 ~~p~~---v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~----P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 508 RDPRK---VQEIVLPIFLNVAIKSELRIRSCIVFFESK----PSVALVSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp TCHHH---HHHHHHHHHHCTTSCHHHHHHHHHHHHHTC----CCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred hchHH---HHHHHHHHhcCCCCChHHHHHHHHHHHHHC----cCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 55532 222333333455677888888877774321 1345677777776676668887777776655543
No 108
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=88.47 E-value=1.9 Score=44.09 Aligned_cols=145 Identities=13% Similarity=0.070 Sum_probs=87.5
Q ss_pred CccchhhhhhhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHh-hcCCCChhhH---hHHHHHhhCCChhhhHHH
Q 003201 60 DVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQR-DCKDEDPMIR---GLALRSLCSLRVANLVEY 135 (840)
Q Consensus 60 DvS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~K-Dl~~~Np~ir---~LALr~l~~I~~~~i~e~ 135 (840)
|....+.-.-.+.+++.++.|-++--.+... ...++ +...++. =..|++=-|| +.|++-++.-..++ .
T Consensus 68 ~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~~~----~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---~ 139 (240)
T 3l9t_A 68 DGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKDKE----ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---K 139 (240)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTSHH----HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---T
T ss_pred CHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCcHH----HHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---H
Confidence 4444444444566776676664433323333 32222 2333333 2346776666 44555555312233 1
Q ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCC-CchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHH
Q 003201 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDA-DFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEAS 214 (840)
Q Consensus 136 l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~-~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~ 214 (840)
+.+.+.+-+.|+++.|||.|+.++..-.. -|....++ ..++.|..+ ..|++--|.-+.-..|.+|.+.+|......|
T Consensus 140 ~l~~~~~W~~d~n~~VRR~Ase~~rpW~~-~~~~k~dp~~ll~iL~~L-~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~ 217 (240)
T 3l9t_A 140 ALPIIDEWLKSSNLHTRRAATEGLRIWTN-RPYFKENPNEAIRRIADL-KEDVSEYVRKSVGNALRDISKKFPDLVKIEL 217 (240)
T ss_dssp THHHHHHHHHCSSHHHHHHHHHHTCSGGG-STTTTTCHHHHHHHHHTT-TTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhhHHHhc-cchhhcCHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHhhhCHHHHHHHH
Confidence 44556788899999999999999743111 12222222 246778776 7999999999999999999999998665555
No 109
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=88.07 E-value=2.4 Score=53.03 Aligned_cols=121 Identities=14% Similarity=0.109 Sum_probs=83.1
Q ss_pred cchHHHHHHHHHHhcc--------CCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhc---cC
Q 003201 77 IVLKKMCYLYVGNYAK--------VNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLG---LK 145 (840)
Q Consensus 77 ~~~KkL~YLyl~~~~~--------~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~---L~ 145 (840)
-.+++.++|.+..+.+ ..++..--..+.+.+-+...+..-+-++|++|||++.++.++.+.+.+... -.
T Consensus 409 ~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~~l~~l~~~l~~~~~~~~ 488 (1056)
T 1lsh_A 409 PILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNSIKKIQRFLPGQGKSLD 488 (1056)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGGGHHHHHTTSTTSSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChhHHHHHHHhhcCcccccc
Confidence 3455667777654431 133555566777777777778888999999999999999877665543321 11
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHh-cCCChhHHHHHHHHHHHH
Q 003201 146 DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLML-NDPDPQVVANCLSALQEI 202 (840)
Q Consensus 146 d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL-~D~d~~Vv~~al~~L~eI 202 (840)
+....||..|+.|+-++-...|+.+ .+.+..+.. .+.++.|..+|+.+|.+.
T Consensus 489 ~~~~rvr~aAi~ALr~~~~~~p~~v-----~~il~~i~~n~~e~~EvRiaA~~~Lm~t 541 (1056)
T 1lsh_A 489 EYSTRVQAEAIMALRNIAKRDPRKV-----QEIVLPIFLNVAIKSELRIRSCIVFFES 541 (1056)
T ss_dssp CSCHHHHHHHHHTTTTGGGTCHHHH-----HHHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHhhhhchHHH-----HHHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 2245799999999988877766554 345555522 467889999998888663
No 110
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=87.90 E-value=6.8 Score=39.94 Aligned_cols=126 Identities=13% Similarity=0.068 Sum_probs=79.0
Q ss_pred chHHHHHHHhcCCCh--hHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcC
Q 003201 175 FPPTLKHLMLNDPDP--QVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV 252 (840)
Q Consensus 175 ~~~~L~~lLL~D~d~--~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~ 252 (840)
-++.+.++ |..+|+ .|..+|...+..++..++.. +...+....+..|+..|...++-.|......|....
T Consensus 9 ~i~~lV~l-L~s~~~~~~~q~~Aa~~l~~L~~~~~~~-------r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa 80 (233)
T 3tt9_A 9 TLERAVSM-LEADHMLPSRISAAATFIQHECFQKSEA-------RKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLV 80 (233)
T ss_dssp CHHHHHHT-CCSSCCCHHHHHHHHHHHHHHHHHCHHH-------HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-hCCCCchHHHHHHHHHHHHHHHcCCcHH-------HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 35677776 687777 88888888888877544321 111222235677888888888999999999888876
Q ss_pred CCChhHHHHH-----HHHHHHHhcc-CChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHH
Q 003201 253 PLDSNEIFDI-----MNLLEDRLQH-ANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLT 309 (840)
Q Consensus 253 p~~~~e~~~i-----l~~l~~~L~~-~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~ 309 (840)
-.+++....| +..+..+|++ .+..+.-.|+.++..+... +..+..+.+...++|+.
T Consensus 81 ~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~~~i~~Lv~ 142 (233)
T 3tt9_A 81 FEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMITEALLTLTE 142 (233)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHHHHHHHHCC
T ss_pred hCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHhccHHHHHH
Confidence 5544433333 5566777764 4566777777777777643 23333333333344443
No 111
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=87.38 E-value=51 Score=41.13 Aligned_cols=103 Identities=9% Similarity=-0.007 Sum_probs=63.8
Q ss_pred HHHHHHHhhcCCCC--hhh---HhHHHHHh-hCCCh---hhhHHHHHHHHHhccCCC-----ChHHHHHHHHHHHHH---
Q 003201 100 LTINFLQRDCKDED--PMI---RGLALRSL-CSLRV---ANLVEYLVGPLGLGLKDN-----NSYVRTVAVIGVLKL--- 162 (840)
Q Consensus 100 L~iNtl~KDl~~~N--p~i---r~LALr~l-~~I~~---~~i~e~l~~~v~~~L~d~-----~pyVRK~Aala~~kl--- 162 (840)
.....+++-+.+++ ... -+.|+++| +++.. ..+...+++.+..+..++ .+-||...+..+.+.
T Consensus 477 i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~w 556 (1073)
T 3gjx_A 477 IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRF 556 (1073)
T ss_dssp HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHH
Confidence 44455665554433 222 26788888 44442 256777777777766555 345555555555443
Q ss_pred HhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhh
Q 003201 163 YHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (840)
Q Consensus 163 ~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~ 205 (840)
.+.+|+.+ +..+..|-+. ..|++++|..+|..+|..|+.+
T Consensus 557 l~~h~~~L--~~vl~~L~~~-m~~~~~~vq~aA~~af~~i~~~ 596 (1073)
T 3gjx_A 557 LRAHWKFL--KTVVNKLFEF-MHETHDGVQDMACDTFIKIAQK 596 (1073)
T ss_dssp HHHCHHHH--HHHHHHHHHH-TTCCSTTHHHHHHHHHHHHHHH
T ss_pred HHhCHHHH--HHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHH
Confidence 33456554 3345556665 4799999999999999999864
No 112
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=84.81 E-value=2.3 Score=50.49 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=47.9
Q ss_pred HHHhccCCCChHHHHHHHHHHHHHHhhcCCc---ccCCCchH-HHHHHHhcCCChhHHHHHHHHHHHHHhhc
Q 003201 139 PLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPP-TLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (840)
Q Consensus 139 ~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~---~~~~~~~~-~L~~lLL~D~d~~Vv~~al~~L~eI~~~~ 206 (840)
|+.+.|.++++-+|..|+.|+..+.. +|+. +...+.+. .|..+ |.|+|..|+.+|..+|..++..+
T Consensus 38 Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~l-L~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 38 PVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTET-LTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp HHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHH-cCCCCHHHHHHHHHHHHHHHhhc
Confidence 34445788889999999999888875 5442 12244444 45665 79999999999999998887644
No 113
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=84.70 E-value=16 Score=45.03 Aligned_cols=254 Identities=15% Similarity=0.144 Sum_probs=150.6
Q ss_pred HHHHHHhhcCCC-ChhhHhHHHHHhhCCC--hhhhHH---HHHHHHHhccCCCChHHHHHHHHHHHHHHhh-cCCcccCC
Q 003201 101 TINFLQRDCKDE-DPMIRGLALRSLCSLR--VANLVE---YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SAPTCIDA 173 (840)
Q Consensus 101 ~iNtl~KDl~~~-Np~ir~LALr~l~~I~--~~~i~e---~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~-~p~~~~~~ 173 (840)
++..+.|-+.+. ++.--++++..||.-- .+.+-+ .+.+.+..++.|+.+-||+.|..|+.-++.. +|+.+ .
T Consensus 55 ~~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~--~ 132 (986)
T 2iw3_A 55 FFGELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI--K 132 (986)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH--H
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH--H
Confidence 455666666664 3322235566666321 112222 3468888999999999999999999998875 45565 5
Q ss_pred CchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCC
Q 003201 174 DFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVP 253 (840)
Q Consensus 174 ~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p 253 (840)
.+++.|...|-....=.....|+.++..+....|. ....--+.++.-+...+.+.-+=....-.+.+..++.
T Consensus 133 ~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~--------~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 133 ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD--------QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATE 204 (986)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH--------HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH--------HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHh
Confidence 67777777743333567888889999888764332 1111113455566666667666666666666666543
Q ss_pred -CChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhhcCCCchhH---HHHHHHHHHH
Q 003201 254 -LDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQS---YAVLSHLHIL 329 (840)
Q Consensus 254 -~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~~~~~~~~l~rl~~~L~~lLss~~~nir---Y~aL~~l~~l 329 (840)
-+..+...+++.+...+.+.. -|-+|++.+..-+ .-..+..-.+.-+++.|.+=|+.++..++ -++.++|.+|
T Consensus 205 ~~~n~d~~~~~~~~~~~~~~p~--~~~~~~~~l~~~t-fv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~l 281 (986)
T 2iw3_A 205 TVDNKDIERFIPSLIQCIADPT--EVPETVHLLGATT-FVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKL 281 (986)
T ss_dssp GCCCTTTGGGHHHHHHHHHCTT--HHHHHHHHHTTCC-CCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTT
T ss_pred cCCCcchhhhHHHHHHHhcChh--hhHHHHHHhhcCe-eEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhh
Confidence 244556667777777776653 3888888765432 11112222344466666677776666654 5566777777
Q ss_pred HhhCCCcccc-------cccEEEEccCCC--HHHHHHHHHHHHhccCC
Q 003201 330 VMRAPFIFAS-------DYKHFYCQYNEP--SYVKKLKLEMLTAVANE 368 (840)
Q Consensus 330 ~~~~p~~~~~-------~~~~f~c~~~dp--~~IK~~kLdiL~~L~n~ 368 (840)
+. .|....+ -++..+-.-.|| ..+-.++++.|.+..+.
T Consensus 282 v~-~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 282 VE-DPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp CC-CHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred cC-CHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 63 2321111 111111123566 56778889999887543
No 114
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=82.34 E-value=14 Score=39.59 Aligned_cols=153 Identities=12% Similarity=0.140 Sum_probs=89.0
Q ss_pred cCCCChHHHHHHHHHHHHHHhhcCCcccCCCch-----HHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHH
Q 003201 144 LKDNNSYVRTVAVIGVLKLYHISAPTCIDADFP-----PTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRERE 218 (840)
Q Consensus 144 L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~-----~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~ 218 (840)
|.+.+.-.+|.|...+.++|..+++.+ .+|+ ..|.+. ..+.+....+-++.+|.++..+..+.. .
T Consensus 127 L~~~~~~~lr~aLfsLk~~~q~D~~Fa--~EFI~~~GL~~Li~v-i~~~~gN~q~Y~L~AL~~LM~~v~Gm~-------g 196 (339)
T 3dad_A 127 LYSSSGPELRRSLFSLKQIFQEDKDLV--PEFVHSEGLSCLIRV-GAAADHNYQSYILRALGQLMLFVDGML-------G 196 (339)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHTCTTHH--HHHHHTTHHHHHHHH-HTTSCHHHHHHHHHHHHHHTTSHHHHH-------H
T ss_pred HhcCCcHHHHHHHHHHHHHhhcchHHH--HHHHHhccHHHHHHH-HHhcChHHHHHHHHHHHHHHhcccccc-------c
Confidence 345778889999999999999888876 3343 456665 578899999999999999865322100 0
Q ss_pred hhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhc--cCChHHHHHHHHHHHhccCCCchhH
Q 003201 219 ALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQ--HANGAVVLSTIKVFLHLTLSMTDVH 296 (840)
Q Consensus 219 ~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e~~~il~~l~~~L~--~~n~aVvleaik~il~l~~~~~~~~ 296 (840)
..-++..+.++...+... +..-...-+..+..+.. .+|..++..+++.+- -....+
T Consensus 197 vvs~~~fI~~lyslv~s~------------------~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~-~~~~~~--- 254 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASL------------------SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVA-STTGAP--- 254 (339)
T ss_dssp HHHCHHHHHHHHHGGGCS------------------CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH-HHHCCC---
T ss_pred hhCCHHHHHHHHHHHcCc------------------cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhh-hccCCC---
Confidence 111344444444433311 11111111222222221 235566666666431 111111
Q ss_pred HHHHHHHHHHHHHhhc---CCCchhHHHHHHHHHHHHhhCC
Q 003201 297 QQVYERIKAPLLTLVS---SGSPEQSYAVLSHLHILVMRAP 334 (840)
Q Consensus 297 ~~~l~rl~~~L~~lLs---s~~~nirY~aL~~l~~l~~~~p 334 (840)
.-..|+.+|. +.+.+++--++-.|+.+....|
T Consensus 255 ------p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~ap 289 (339)
T 3dad_A 255 ------PWANLVSILEEKNGADPELLVYTVTLINKTLAALP 289 (339)
T ss_dssp ------TTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCS
T ss_pred ------cHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCC
Confidence 1123556775 6789999989999998887765
No 115
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=81.92 E-value=27 Score=43.09 Aligned_cols=218 Identities=14% Similarity=0.142 Sum_probs=147.9
Q ss_pred HHHHHHhhcCCCChhhHhHH---HHHhhCCChhhhHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHhhcCCccc--CCC
Q 003201 101 TINFLQRDCKDEDPMIRGLA---LRSLCSLRVANLVEYLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHISAPTCI--DAD 174 (840)
Q Consensus 101 ~iNtl~KDl~~~Np~ir~LA---Lr~l~~I~~~~i~e~l~~~v~~~L~d~-~pyVRK~Aala~~kl~~~~p~~~~--~~~ 174 (840)
..+.+..-+.|.+..+|..| +.++.....++-+..+.|.+...|.+. .+-.+-.|+-++-++-...|+.+. -++
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~ 175 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPE 175 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 46778888899999999765 555555566766789999999999666 467777777778888877787652 256
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHh--cC
Q 003201 175 FPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAK--YV 252 (840)
Q Consensus 175 ~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~--y~ 252 (840)
+++.+.++| .|.-+-|-.+|..++..++.--.. +| +. +.+..|++++.++++ .-..++.|.. |.
T Consensus 176 ~~p~~~~~~-~d~k~~v~~~~~~~~~~~~~~~~n------~d----~~-~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv 241 (986)
T 2iw3_A 176 LIPVLSETM-WDTKKEVKAAATAAMTKATETVDN------KD----IE-RFIPSLIQCIADPTE--VPETVHLLGATTFV 241 (986)
T ss_dssp HHHHHHHHT-TCSSHHHHHHHHHHHHHHGGGCCC------TT----TG-GGHHHHHHHHHCTTH--HHHHHHHHTTCCCC
T ss_pred hhcchHhhc-ccCcHHHHHHHHHHHHHHHhcCCC------cc----hh-hhHHHHHHHhcChhh--hHHHHHHhhcCeeE
Confidence 778888885 899999999999999988752221 11 11 247788888888877 5555777764 32
Q ss_pred CC-ChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCC--CchhHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHHHH
Q 003201 253 PL-DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLS--MTDVHQQVYERIKAPLLTLVS-SGSPEQSYAVLSHLHI 328 (840)
Q Consensus 253 p~-~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~--~~~~~~~~l~rl~~~L~~lLs-s~~~nirY~aL~~l~~ 328 (840)
.. +.....-+...|..-|.....++-..++-++=++..- ++......+.++.+-|-+... -.+||.|=++-+.+..
T Consensus 242 ~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~ 321 (986)
T 2iw3_A 242 AEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKT 321 (986)
T ss_dssp SCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHH
T ss_pred eeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHH
Confidence 22 2223334556666667777777776666655444321 222223344455555555443 4789999999999888
Q ss_pred HHhh
Q 003201 329 LVMR 332 (840)
Q Consensus 329 l~~~ 332 (840)
|...
T Consensus 322 l~~~ 325 (986)
T 2iw3_A 322 LRRV 325 (986)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8654
No 116
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=80.73 E-value=8.1 Score=44.33 Aligned_cols=228 Identities=14% Similarity=0.078 Sum_probs=120.4
Q ss_pred hccCCCcchHHHHHHHHHHhcc-----------CCCchHH--HHHHHHHh--hcCCCC--hhhHhHHHHHhhCC-C-hhh
Q 003201 71 CSATSDIVLKKMCYLYVGNYAK-----------VNPDLAL--LTINFLQR--DCKDED--PMIRGLALRSLCSL-R-VAN 131 (840)
Q Consensus 71 l~~S~d~~~KkL~YLyl~~~~~-----------~~~dl~l--L~iNtl~K--Dl~~~N--p~ir~LALr~l~~I-~-~~~ 131 (840)
-+-+++-+.|.=+-+++....+ .|.|+++ +++=.+-| |.-+.. --||--|=.+||.+ . .++
T Consensus 182 DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL~hLp~e 261 (800)
T 3oc3_A 182 NLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRIYPLIGP 261 (800)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHHTTTSCS
T ss_pred HhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHHHhCChh
Confidence 3445666777766676666542 2336544 44444443 333322 23454433333333 1 112
Q ss_pred hHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccC-CCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcc
Q 003201 132 LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCID-ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTS 210 (840)
Q Consensus 132 i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~-~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~ 210 (840)
.+ +...+.+.+..+..-||--+.+++--+ .+.+.+ ++..+.+... |.|.|--|.+.|..+|..+. .++..
T Consensus 262 -~~-IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~Ld~Vv~aVL~G-L~D~DDDVRAVAAetLiPIA--~p~~l 332 (800)
T 3oc3_A 262 -ND-IIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVEDKDGLCRKLVSL-LSSPDEDIKLLSAELLCHFP--ITDSL 332 (800)
T ss_dssp -CC-HHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCCCHHHHHHHHHHH-TTCSSHHHHHHHHHHHTTSC--CSSTH
T ss_pred -HH-HHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHHHHHHHHHHHHhh-cCCcccHHHHHHHHHhhhhc--chhhH
Confidence 22 222233456777888888888887655 333311 2333444444 58888888888888888887 34311
Q ss_pred hHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcC--CCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhc
Q 003201 211 EEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV--PLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHL 288 (840)
Q Consensus 211 ~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~--p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l 288 (840)
..+++ ++...|..+.+.+. ....++++|+.++ |.+......++.++-|.++|+-++|-.++.+++..+
T Consensus 333 -------~~LL~--iLWd~L~~LDDLSA-STgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tf 402 (800)
T 3oc3_A 333 -------DLVLE--KCWKNIESEELISV-SKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNL 402 (800)
T ss_dssp -------HHHHH--HHHHHHHTCCSCCT-THHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTC
T ss_pred -------HHHHH--HHHHHhhhhcccch-hhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Confidence 01111 22333333333222 3445566665532 111111126778899999999999999999998877
Q ss_pred cCCCchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHH
Q 003201 289 TLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHL 326 (840)
Q Consensus 289 ~~~~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l 326 (840)
.. .+.-+-++ ..+|-..+.+++=++++.-
T Consensus 403 L~--~~~LRLIF-------QNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 403 SE--ESIDFLVA-------EVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp CC--HHHHHHHH-------HHHHHCSCHHHHHHHHHHH
T ss_pred Hh--hhHHHHHH-------HHHHhCCcHHHHHHHHHHH
Confidence 52 12211122 2223335677776666655
No 117
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=80.35 E-value=1.3e+02 Score=37.60 Aligned_cols=129 Identities=12% Similarity=0.101 Sum_probs=72.1
Q ss_pred hhhhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCC--------h---hhhHHH
Q 003201 67 EMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR--------V---ANLVEY 135 (840)
Q Consensus 67 ~Vi~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~--------~---~~i~e~ 135 (840)
.++..+-+++-..|+-+.-++..+ +.+|+--..+..-+.+ +.|+.+|=.|+.+|-+.. . ..+-+.
T Consensus 32 ~lv~~ly~p~~~~r~qA~~~L~q~-q~sp~aw~~~~~iL~~---s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~ 107 (1073)
T 3gjx_A 32 NVVNCLYHGEGAQQRMAQEVLTHL-KEHPDAWTRVDTILEF---SQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKY 107 (1073)
T ss_dssp HHHHTTTCSSHHHHHHHHHHHHTS-SCCSCHHHHHTCC------CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHH-HcCchHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 344444445555666666666554 3455543333333322 346677766666665431 1 124445
Q ss_pred HHHHHHhccCC-----CChHHHHHHHHHHHHHHhh-cCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 003201 136 LVGPLGLGLKD-----NNSYVRTVAVIGVLKLYHI-SAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (840)
Q Consensus 136 l~~~v~~~L~d-----~~pyVRK~Aala~~kl~~~-~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~ 203 (840)
+...+.+...+ .++.++.+.+.++..+++. +|+.- +++++.+..+ +.. ++...-+.+..|..+.
T Consensus 108 Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W--p~fi~dLv~~-~~~-~~~~~~~~L~IL~~L~ 177 (1073)
T 3gjx_A 108 VVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW--PTFISDIVGA-SRT-SESLCQNNMVILKLLS 177 (1073)
T ss_dssp HHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC--TTHHHHHHHH-HHH-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc--cHHHHHHHHH-hCC-CHHHHHHHHHHHHHHH
Confidence 55555554333 3578889999999999876 78765 6677777776 343 3444444555555443
No 118
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=75.34 E-value=10 Score=44.91 Aligned_cols=84 Identities=11% Similarity=0.033 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCcCCCCCChH--H-HHHHHHHhh--ccCCcHHHHHHHHHHHhHHhhcC--C--------h----hHHHHH
Q 003201 464 AKAALIWMLGEYSQDMQDAP--Y-ILESLTENW--EEEPSAEVRLHLLTAVMKCFFKR--P--------P----ETQKVL 524 (840)
Q Consensus 464 ak~a~iwilGEy~~~i~~~~--~-il~~l~~~~--~~e~~~~vk~~lLta~~Kl~~~~--p--------~----e~~~~l 524 (840)
.+..++=+||-.+....+.. . |=..+++-. ..++++.+-.+.|.+++=+|.-. | . ..+..+
T Consensus 555 lrv~~ig~Lg~LA~~~~~~~~n~~Ig~fLl~~l~~~~~~~~~v~~EalnaifDIyaD~~~~yD~~Vf~~~~~l~~L~~~v 634 (684)
T 4gmo_A 555 LGVKCIGVVGSLAHDPAPIEVNREVGVFLVTLLRQSNNVPPAEIVEALNQLFDIYGDEELACDKEVFWKDGFLKHLEEFL 634 (684)
T ss_dssp HHHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHSCCTTSHHHHHTTTTTTHHHHHHHHH
T ss_pred hhhhHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCccccHHHHHhccHHHHHHHHH
Confidence 56667888888776544311 1 111222211 11233778888888888888632 1 0 122222
Q ss_pred HHHHHhhcc-C--CChHHHhHHHHHH
Q 003201 525 GAALAAGLA-D--FHQDVHDRALFYH 547 (840)
Q Consensus 525 ~~vL~~~~~-d--~d~dVrdRA~~Y~ 547 (840)
..+=..... | .++|+|.|+-+-+
T Consensus 635 p~~k~~~K~idK~k~~elr~r~~e~~ 660 (684)
T 4gmo_A 635 PKMRTLTKGIDKRTQPELRTRADEAL 660 (684)
T ss_dssp HHHHHHHHTSCTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 222223322 3 5788888887654
No 119
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=73.46 E-value=2.3 Score=43.80 Aligned_cols=64 Identities=23% Similarity=0.370 Sum_probs=46.4
Q ss_pred cCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCC
Q 003201 109 CKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPD 188 (840)
Q Consensus 109 l~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d 188 (840)
++|+++.||..|.+.++ + +.+..+++|+++.||+.|+-. ..+ +.+..+ +.|+|
T Consensus 131 ~~D~d~~VR~~aA~~l~----~-------~~l~~l~~D~d~~VR~~aa~~------l~~---------~ll~~l-l~D~d 183 (244)
T 1lrv_A 131 AADRDYLVRAYVVQRIP----P-------GRLFRFMRDEDRQVRKLVAKR------LPE---------ESLGLM-TQDPE 183 (244)
T ss_dssp TTCSSHHHHHHHHHHSC----G-------GGGGGTTTCSCHHHHHHHHHH------SCG---------GGGGGS-TTCSS
T ss_pred HcCCCHHHHHHHHHhcC----H-------HHHHHHHcCCCHHHHHHHHHc------CCH---------HHHHHH-HcCCC
Confidence 67899999998888542 1 245678899999999999875 111 223344 68999
Q ss_pred hhHHHHHHHHH
Q 003201 189 PQVVANCLSAL 199 (840)
Q Consensus 189 ~~Vv~~al~~L 199 (840)
+.|..+++..+
T Consensus 184 ~~VR~aaa~~l 194 (244)
T 1lrv_A 184 PEVRRIVASRL 194 (244)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99888888766
No 120
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=72.27 E-value=2.7 Score=43.30 Aligned_cols=66 Identities=21% Similarity=0.184 Sum_probs=39.1
Q ss_pred HHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHh
Q 003201 105 LQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLML 184 (840)
Q Consensus 105 l~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL 184 (840)
+.+=++|+|+.||..|...++. +.+.+++.|+++.||..|+..+ .+ +.+..+ +
T Consensus 79 l~~L~~D~~~~VR~~aA~~L~~-----------~~L~~ll~D~d~~VR~~aA~~l------~~---------~~L~~L-~ 131 (244)
T 1lrv_A 79 LTPLIRDSDEVVRRAVAYRLPR-----------EQLSALMFDEDREVRITVADRL------PL---------EQLEQM-A 131 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTSCS-----------GGGGGTTTCSCHHHHHHHHHHS------CT---------GGGGGG-T
T ss_pred HHHHccCcCHHHHHHHHHHCCH-----------HHHHHHHcCCCHHHHHHHHHhC------CH---------HHHHHH-H
Confidence 4555567777777777765431 2456667777777777766632 11 123343 5
Q ss_pred cCCChhHHHHHHH
Q 003201 185 NDPDPQVVANCLS 197 (840)
Q Consensus 185 ~D~d~~Vv~~al~ 197 (840)
+|+|+.|...+..
T Consensus 132 ~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 132 ADRDYLVRAYVVQ 144 (244)
T ss_dssp TCSSHHHHHHHHH
T ss_pred cCCCHHHHHHHHH
Confidence 7777777766654
No 121
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=72.12 E-value=1.1e+02 Score=33.69 Aligned_cols=172 Identities=15% Similarity=0.178 Sum_probs=105.6
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCChHH-----HHHHHHHHhhhcCc-hhhHHHHHHHHHHHhhCC--Ccchh
Q 003201 375 VTELCEYAANVDIPIARESIRAVGKIALQQYDVNA-----IVDRLLQFLEMEKD-YVTAEALVLVKDLLRKYP--QWSHD 446 (840)
Q Consensus 375 v~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~~~-----~v~~Ll~LL~~~~~-~v~~e~v~~i~~il~~~p--~~~~~ 446 (840)
+..|++-..+.|+.=|.-+-.-+.++-.|+..... +-+++.+++-.... +-..|.+..+..|+..+. -..+.
T Consensus 131 i~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeeh 210 (403)
T 3fga_B 131 VLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEH 210 (403)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHH
Confidence 44455666666665555555555555555543222 23556666554332 346788888899988773 33333
Q ss_pred HHHHHHhhhc-ccCC-chHHHHHHHHHHcCcCCCCCC-hHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCC-hhHHH
Q 003201 447 CIAVVGSISS-QNVQ-EPKAKAALIWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRP-PETQK 522 (840)
Q Consensus 447 ~~~~l~~l~~-~~i~-~~~ak~a~iwilGEy~~~i~~-~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p-~e~~~ 522 (840)
...+..-++. .... -+.--..+++++-.|.+.-+. +..+++.+++.|...+ +.-+...|.-+..+.-..+ .+.+.
T Consensus 211 k~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tn-s~KevlFL~Ele~iLe~~~~~~f~~ 289 (403)
T 3fga_B 211 KIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTH-SPKEVMFLNELEEILDVIEPSEFVK 289 (403)
T ss_dssp HHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSC-HHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 2222222221 1111 112234567777777765443 7789999999999988 8788888888888876554 34455
Q ss_pred HHHHHHH---hhccCCChHHHhHHHHHH
Q 003201 523 VLGAALA---AGLADFHQDVHDRALFYH 547 (840)
Q Consensus 523 ~l~~vL~---~~~~d~d~dVrdRA~~Y~ 547 (840)
+...+++ .|..|.+..|-+||..+|
T Consensus 290 i~~~lf~~la~ci~S~hfqVAErAL~~w 317 (403)
T 3fga_B 290 IMEPLFRQLAKCVSSPHFQVAERALYYW 317 (403)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 5544444 677889999999999988
No 122
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=66.62 E-value=63 Score=37.24 Aligned_cols=130 Identities=13% Similarity=0.161 Sum_probs=76.4
Q ss_pred hccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCC-h
Q 003201 71 CSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNN-S 149 (840)
Q Consensus 71 l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~-p 149 (840)
....+.-+.+.=|-|.+.-+.+.-.+ .--+++.+.+-|.|++..||+.|-.+|.-+..++-+..+..-+=.+|.+-+ -
T Consensus 271 ~l~~~~WEVRHGGLLGLKYL~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~LDDL 349 (800)
T 3oc3_A 271 FLDSGDWQVQFSGLIALGYLKEFVED-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEELI 349 (800)
T ss_dssp GGGCSCHHHHHHHHHHHHHTGGGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTCCSC
T ss_pred hcCCCCeeehhhhHHHHHHHHHHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhhccc
Confidence 33556666777666666644111111 345677777778888888888887777777555444444444444443321 1
Q ss_pred HHHHHHHHHH-HHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHH
Q 003201 150 YVRTVAVIGV-LKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEI 202 (840)
Q Consensus 150 yVRK~Aala~-~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI 202 (840)
-.-...+|.+ .+++...+....++..+++|..+ ++.+=++|..+++.+|..+
T Consensus 350 SASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PF-LRHtITSVR~AVL~TL~tf 402 (800)
T 3oc3_A 350 SVSKTSNLSLLTKIYRENPELSIPPERLKDIFPC-FTSPVPEVRTSILNMVKNL 402 (800)
T ss_dssp CTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGG-GTCSSHHHHHHHHHHTTTC
T ss_pred chhhHHHHHHHHHHHcCCcccccChHHHHHHHhh-hcCCcHHHHHHHHHHHHHH
Confidence 1222333333 44555445444556777777777 5777778887777777554
No 123
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=65.83 E-value=48 Score=33.39 Aligned_cols=90 Identities=10% Similarity=0.080 Sum_probs=57.8
Q ss_pred HHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHH
Q 003201 138 GPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRER 217 (840)
Q Consensus 138 ~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~ 217 (840)
+.+.+-+.|+++++||.|+.+.+..+. ..+. ....+.+..+ +.|++.-|.-+.--+|.++.+++|.
T Consensus 134 ~~l~~W~~s~~~w~rR~ai~~~l~~~~-~~d~---~~~~~~i~~~-~~d~~~yV~kAvgW~Lr~~~k~~p~--------- 199 (232)
T 3jxy_A 134 AYIPKWIASDNIWLQRAAILFQLKYKQ-KMDE---ELLFWIIGQL-HSSKEFFIQKAIGWVLREYAKTNPD--------- 199 (232)
T ss_dssp GTHHHHHHSSCHHHHHHHHHTTTTCGG-GCCH---HHHHHHHHHH-TTCCCHHHHHHHHHHHHHHTTTCHH---------
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHh-CCCH---HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhCHH---------
Confidence 345666788999999999988755332 1111 1234445555 6899999988877889999876653
Q ss_pred HhhccHHHHHHHHHhhccCChhHHHHHHHHHH
Q 003201 218 EALISKPVIYYLLNRIKEFSEWAQCLVLELVA 249 (840)
Q Consensus 218 ~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~ 249 (840)
.+...+.. ...++|..-+.++-|.
T Consensus 200 -------~v~~fl~~-~~l~~~~~r~A~k~l~ 223 (232)
T 3jxy_A 200 -------VVWEYVQN-NELAPLSKREAIKHIK 223 (232)
T ss_dssp -------HHHHHHHH-SCCCHHHHHHHTTTTH
T ss_pred -------HHHHHHHH-CCCCHHHHHHHHHhcc
Confidence 23333332 2567777766665553
No 124
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2
Probab=61.29 E-value=21 Score=38.11 Aligned_cols=96 Identities=10% Similarity=0.128 Sum_probs=59.6
Q ss_pred hHHHHHHhhccCcccceeeeeCccCccCCCC-HHHHHHHhhhcCEEEEeecC-CC----CceEEEEeeeccCCCceEEEE
Q 003201 729 PGTFQQKWRQLPISLSQEFSLSPEGVAALTT-PQALLWHMQGHSIHCIASGG-HS----PNFKFFFFAQKAEESSNFLVE 802 (840)
Q Consensus 729 ~~~Fq~~W~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~~I~tiAsg~-~~----~~~k~y~yaq~~~~~~~fL~E 802 (840)
.+.|...|.+++..++.+-.+.+... -+ .+++...+.--|.+..- |. .. ...-+++++. ..+|.-+|+=
T Consensus 217 ~~nF~~~We~l~~~~E~~~tf~L~~~---~sL~~AV~~l~~~Lgm~p~e-~sd~v~~~~~sHtL~LsG~-~~gg~~VLvr 291 (322)
T 1pzd_A 217 KLNFEAAWDEVGDEFQKEETFTLSTI---KTLEEAVGNIVKFLGMHPCE-RSDKVPDNKNTHTLLLAGV-FRGGHDILVR 291 (322)
T ss_dssp CSCHHHHHHHHCSTTCEEEEEEESSC---CCHHHHHHHHHHHHTCEECT-TTTCCCSSCSEEEEEEEEE-ETTSCEEEEE
T ss_pred cCchHHHHHhcCCccceEEEEEccCc---CcHHHHHHHHHHhcCCcccc-CCCcCCCCCcceEEEEEEE-EeCCcEEEEE
Confidence 45899999999765553333333321 22 34666667777777665 43 11 2344666666 5556567766
Q ss_pred EEEecC-CCceEEEEecCChhhHHHHHH
Q 003201 803 CIINTS-SAKAQVKIKADDQSTSQAFSD 829 (840)
Q Consensus 803 l~i~~~-~~~~~~tvKs~~~~~~~~f~~ 829 (840)
+.+-.+ .-.|++++|+++++.......
T Consensus 292 ~rl~~~~gv~~kl~vRS~~~~v~~~v~~ 319 (322)
T 1pzd_A 292 SRLLLLDTVTMQVTARSSEELPVDIVLA 319 (322)
T ss_dssp EEEEESSSEEEEEEEEESSHHHHHHHHH
T ss_pred EEEeeCCceEEEEEEecCCHHHHHHHHH
Confidence 665533 567999999999887665544
No 125
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=60.99 E-value=17 Score=36.43 Aligned_cols=128 Identities=8% Similarity=-0.105 Sum_probs=71.7
Q ss_pred hhhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCC-hhhHhHHHHHhhCCC--hhhhHHHHHHHHHhccC
Q 003201 69 VMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDED-PMIRGLALRSLCSLR--VANLVEYLVGPLGLGLK 145 (840)
Q Consensus 69 i~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~N-p~ir~LALr~l~~I~--~~~i~e~l~~~v~~~L~ 145 (840)
..+..++-++.+-++-+++....+.-.+-.+-.+..+... -+| ..+=++| ++++.+- .++ .+.+.+.+-+.
T Consensus 61 ~~L~~s~~~E~r~la~~~l~~~~~~~~~~~l~~~~~~l~~--~~nWd~~D~~a-~~~~~~~~~~~~---~~~~~i~~W~~ 134 (220)
T 2b6c_A 61 EAYYQKTEREYQYVAIDLALQNVQRFSLEEVVAFKAYVPQ--KAWWDSVDAWR-KFFGSWVALHLT---ELPTIFALFYG 134 (220)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHTGGGCCHHHHHHGGGGTTT--TCSHHHHHHHH-HHHHHHHHHSGG---GHHHHHHHHTT
T ss_pred HHHHcCchhHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcc--CCcHHHHHHHH-HHHHHHHHHChH---HHHHHHHHHHc
Confidence 3456666666666666666654422122222223333332 222 2333444 4333321 121 23345778889
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Q 003201 146 DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (840)
Q Consensus 146 d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~ 207 (840)
|++.++||.|+.+.+...+ .... ....+.+..+ +.|++--|.-+.--+|.++.+++|
T Consensus 135 s~~~w~rR~ai~~~l~~~~--~~~~--~~~~~i~~~~-~~d~~~yV~kavgW~Lr~~~k~~~ 191 (220)
T 2b6c_A 135 AENFWNRRVALNLQLMLKE--KTNQ--DLLKKAIIYD-RTTEEFFIQKAIGWSLRQYSKTNP 191 (220)
T ss_dssp CSSHHHHHHHHHTTTTCGG--GCCH--HHHHHHHHHT-TTCCCHHHHHHHHHHHHHHTTTCH
T ss_pred CCCHHHHHHHHHHHHHHHH--CCCH--HHHHHHHHHh-CCChHHHHHHHHHHHHHHHHhhCH
Confidence 9999999999998853321 1111 1223444444 689999998888888999988765
No 126
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2
Probab=59.14 E-value=25 Score=36.60 Aligned_cols=96 Identities=10% Similarity=0.116 Sum_probs=59.7
Q ss_pred hHHHHHHhhccCcccceeeeeCccCccCCCC-HHHHHHHhhhcCEEEEeecC-CC----CceEEEEeeeccCCCceEEEE
Q 003201 729 PGTFQQKWRQLPISLSQEFSLSPEGVAALTT-PQALLWHMQGHSIHCIASGG-HS----PNFKFFFFAQKAEESSNFLVE 802 (840)
Q Consensus 729 ~~~Fq~~W~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~~I~tiAsg~-~~----~~~k~y~yaq~~~~~~~fL~E 802 (840)
.+.|...|.+++..++.+-.+.+... -+ .+++.+.+.--|.+..- |. .. ...-+++++. ..+|.-+|+=
T Consensus 170 ~~nF~~~We~l~~~~E~~~tf~L~~~---~sl~~AV~~l~~~Lgm~p~e-~sd~v~~~~~~HtL~LsG~-~~gg~~Vlvr 244 (275)
T 1r4x_A 170 KLNFEAAWDEVGDEFEKEETFTLSTI---KTLEEAVGNIVKFLGMHPCE-RSDKVPDNKNTHTLLLAGV-FRGGHDILVR 244 (275)
T ss_dssp CSCHHHHHHHHCSTTCEEEEEEETTC---CCHHHHHHHHHHHHTCEECT-TTTSCCSSCSEEEEEEEEE-ETTTEEEEEE
T ss_pred cCchHHHHHhcCCccceEEEEEccCc---CcHHHHHHHHHHhcCCcccc-CCccCCCCCcceEEEEEEE-EeCCcEEEEE
Confidence 45899999999665553333333321 22 34666777777777665 43 11 2334666666 5555566666
Q ss_pred EEEecC-CCceEEEEecCChhhHHHHHH
Q 003201 803 CIINTS-SAKAQVKIKADDQSTSQAFSD 829 (840)
Q Consensus 803 l~i~~~-~~~~~~tvKs~~~~~~~~f~~ 829 (840)
+.+-.+ .-.|++++|+++++.......
T Consensus 245 ~rl~~~~gv~~kl~vRs~~~~v~~~v~~ 272 (275)
T 1r4x_A 245 SRLLLLDTVTMQVTARSLEELPVDIILA 272 (275)
T ss_dssp EEEEESSSEEEEEEEEESSHHHHHHHHH
T ss_pred EEEecCCceEEEEEEEcCCHHHHHHHHH
Confidence 665533 567999999999887665544
No 127
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=59.02 E-value=2.2e+02 Score=31.63 Aligned_cols=174 Identities=15% Similarity=0.180 Sum_probs=106.2
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCChH-----HHHHHHHHHhhhcCc-hhhHHHHHHHHHHHhhCC--Ccch
Q 003201 374 IVTELCEYAANVDIPIARESIRAVGKIALQQYDVN-----AIVDRLLQFLEMEKD-YVTAEALVLVKDLLRKYP--QWSH 445 (840)
Q Consensus 374 Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~~-----~~v~~Ll~LL~~~~~-~v~~e~v~~i~~il~~~p--~~~~ 445 (840)
.+..|++...+.|+.=|.-+-.-+.++-.|+.+.. .+-+++.+++..... +-..|++..+..|+..+. -..+
T Consensus 163 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKee 242 (449)
T 2npp_B 163 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 242 (449)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHH
Confidence 34455666666666555555555566666665432 233556666644322 346788888888888764 2222
Q ss_pred hHHHHHHhhh-cccCC-chHHHHHHHHHHcCcCCCCCC-hHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCC-hhHH
Q 003201 446 DCIAVVGSIS-SQNVQ-EPKAKAALIWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRP-PETQ 521 (840)
Q Consensus 446 ~~~~~l~~l~-~~~i~-~~~ak~a~iwilGEy~~~i~~-~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p-~e~~ 521 (840)
....+..-++ ..... -+.--.-+++++-.|.+.-+. +..+++.+++.|...+ +.-+...|.-+..+.-..+ .+.+
T Consensus 243 hk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tn-s~KevlFL~eleeile~~~~~ef~ 321 (449)
T 2npp_B 243 HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTH-SPKEVMFLNELEEILDVIEPSEFV 321 (449)
T ss_dssp HHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSC-HHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHHhCCHHHHH
Confidence 2221222222 01111 112234566777777665443 6789999999999988 7777888888888775544 4455
Q ss_pred HHHHH---HHHhhccCCChHHHhHHHHHHH
Q 003201 522 KVLGA---ALAAGLADFHQDVHDRALFYHR 548 (840)
Q Consensus 522 ~~l~~---vL~~~~~d~d~dVrdRA~~Y~r 548 (840)
.+... .+..|..|.+..|=+||..+|.
T Consensus 322 ~i~~~lF~~la~ci~S~hfqVAErAL~~w~ 351 (449)
T 2npp_B 322 KIMEPLFRQLAKCVSSPHFQVAERALYYWN 351 (449)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHC
Confidence 55444 4456788999999999998884
No 128
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=58.03 E-value=26 Score=32.59 Aligned_cols=80 Identities=11% Similarity=-0.020 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCC------------ChhhhHHHHHHHHHhccCCC
Q 003201 80 KKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL------------RVANLVEYLVGPLGLGLKDN 147 (840)
Q Consensus 80 KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I------------~~~~i~e~l~~~v~~~L~d~ 147 (840)
---+.+-++-..+.+++..--++-.|+|=+++.||.+.-+||..+-.+ ...++.+.+. +.+...
T Consensus 22 dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~----~l~~~~ 97 (140)
T 3ldz_A 22 DWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVS----NVLNKG 97 (140)
T ss_dssp CHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHH----HHHHHS
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHH----HHhccC
Confidence 334556677777888888889999999999999999888887765432 2334444433 333345
Q ss_pred ChHHHHHHHHHHHHHH
Q 003201 148 NSYVRTVAVIGVLKLY 163 (840)
Q Consensus 148 ~pyVRK~Aala~~kl~ 163 (840)
++-||++....+..-.
T Consensus 98 ~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 98 HPKVCEKLKALMVEWT 113 (140)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6777777665554433
No 129
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=57.95 E-value=56 Score=32.97 Aligned_cols=84 Identities=7% Similarity=-0.044 Sum_probs=52.9
Q ss_pred hhCCChhhhHHHHHH-----------HHHhccCCCChHHHHHHHH----HHHHHHhhcCCcccCCCchHHHHHHHhcCCC
Q 003201 124 LCSLRVANLVEYLVG-----------PLGLGLKDNNSYVRTVAVI----GVLKLYHISAPTCIDADFPPTLKHLMLNDPD 188 (840)
Q Consensus 124 l~~I~~~~i~e~l~~-----------~v~~~L~d~~pyVRK~Aal----a~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d 188 (840)
+..+.+.++++.++. .+.+-+.|++.++|+.|+. -+..+..+.++.-....+.+.+... +.|++
T Consensus 86 v~~~~nWd~~D~~~~~l~~~~~~~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~-l~~~~ 164 (235)
T 1t06_A 86 IDGAYFYMLSDYVVAVTLSESNIAQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDT-IHHSP 164 (235)
T ss_dssp HHTCCSHHHHHHTHHHHHTTSSSHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHH-GGGSC
T ss_pred HhCCCcHHHHHHHHHHHHhcCchHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHH-ccCCh
Confidence 445555555554433 3455667899999999999 4444232222211113455666655 58889
Q ss_pred hhHHHHHHHHHHHHHhhccC
Q 003201 189 PQVVANCLSALQEIWSLEAS 208 (840)
Q Consensus 189 ~~Vv~~al~~L~eI~~~~~~ 208 (840)
..|.-+.--+|.++..+++.
T Consensus 165 ~~v~kAi~W~Lr~~gk~~~~ 184 (235)
T 1t06_A 165 ERTKSAMNNFLNTVAISYVP 184 (235)
T ss_dssp HHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHhhCHH
Confidence 88888877888888877664
No 130
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=57.63 E-value=10 Score=38.54 Aligned_cols=72 Identities=6% Similarity=-0.045 Sum_probs=56.9
Q ss_pred cCCCChhhHhHHHH----HhhCCC----hhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcccCCCchHHHH
Q 003201 109 CKDEDPMIRGLALR----SLCSLR----VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (840)
Q Consensus 109 l~~~Np~ir~LALr----~l~~I~----~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~~~~~~~~~L~ 180 (840)
+.|+|+..|-.|+- .++... ...-.+.+...+...+.|++.||||...=++.-+...+|+.+ ..+++...
T Consensus 117 ~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~--~~al~~~~ 194 (235)
T 1t06_A 117 IASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLH--EKAVEIAK 194 (235)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHH--HHHHHHHH
Confidence 36889999988888 656544 235667778888889999999999999999999999999887 45666555
Q ss_pred HH
Q 003201 181 HL 182 (840)
Q Consensus 181 ~l 182 (840)
.+
T Consensus 195 ~l 196 (235)
T 1t06_A 195 EV 196 (235)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 131
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=57.35 E-value=1.7e+02 Score=31.93 Aligned_cols=173 Identities=16% Similarity=0.188 Sum_probs=104.3
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCChH-----HHHHHHHHHhhhcCc-hhhHHHHHHHHHHHhhCC--Ccch
Q 003201 374 IVTELCEYAANVDIPIARESIRAVGKIALQQYDVN-----AIVDRLLQFLEMEKD-YVTAEALVLVKDLLRKYP--QWSH 445 (840)
Q Consensus 374 Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~~-----~~v~~Ll~LL~~~~~-~v~~e~v~~i~~il~~~p--~~~~ 445 (840)
.+..|++-..+.|+.=|..+..-+.++-.|+.... .+-+++.+++..... .-..|++..+..|++.+. =..+
T Consensus 175 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKee 254 (392)
T 2jak_A 175 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 254 (392)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHH
Confidence 34445555566666555555555566666665432 233566677654332 346788888888888774 2222
Q ss_pred hHHHHHHhhhcc--cCC-chHHHHHHHHHHcCcCCCCCC-hHHHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcCCh-hH
Q 003201 446 DCIAVVGSISSQ--NVQ-EPKAKAALIWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPP-ET 520 (840)
Q Consensus 446 ~~~~~l~~l~~~--~i~-~~~ak~a~iwilGEy~~~i~~-~~~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~-e~ 520 (840)
... .+.+.+.. ... -+.--..+++++-.|.+.-+. +..+++.+++.|...+ ..-+...|.-+..+.-..++ +.
T Consensus 255 hk~-Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tn-s~KevlFL~eleeiLe~~~~~~f 332 (392)
T 2jak_A 255 HKI-FLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTH-SPKEVMFLNELEEILDVIEPSEF 332 (392)
T ss_dssp HHH-HHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSC-CTTHHHHHHHHHHHHHTCCHHHH
T ss_pred HHH-HHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHHhCCHHHH
Confidence 222 22222211 110 111223456777666654333 6788999999998876 55667777777777766554 44
Q ss_pred HHHHHHH---HHhhccCCChHHHhHHHHHHH
Q 003201 521 QKVLGAA---LAAGLADFHQDVHDRALFYHR 548 (840)
Q Consensus 521 ~~~l~~v---L~~~~~d~d~dVrdRA~~Y~r 548 (840)
+.+...+ +..|..|.+..|-+||..+|.
T Consensus 333 ~~i~~~lF~~la~ci~S~hfqVAErAL~~wn 363 (392)
T 2jak_A 333 VKIMEPLFRQLAKCVSSPHFQVAERALYYWN 363 (392)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 5454444 456788999999999999984
No 132
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=56.62 E-value=54 Score=31.22 Aligned_cols=84 Identities=8% Similarity=-0.013 Sum_probs=57.3
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhC------------CChhhhHHHHHHHHHhccCCCC
Q 003201 81 KMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCS------------LRVANLVEYLVGPLGLGLKDNN 148 (840)
Q Consensus 81 kL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~------------I~~~~i~e~l~~~v~~~L~d~~ 148 (840)
--..+-++-..+.+++..--++-+|+|=++++||.+.-+||..+-. |...++.+.+..-+. ...+
T Consensus 33 w~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~---~~~~ 109 (163)
T 1x5b_A 33 WSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIK---NKAH 109 (163)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHH---TTCC
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHc---cCCC
Confidence 3345566666677788888999999999999999999888887643 233445555443332 1257
Q ss_pred hHHHHHHHHHHHHHHhhcC
Q 003201 149 SYVRTVAVIGVLKLYHISA 167 (840)
Q Consensus 149 pyVRK~Aala~~kl~~~~p 167 (840)
+-||+++...+..-...++
T Consensus 110 ~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 110 PKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 8999998776655444443
No 133
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=50.11 E-value=65 Score=30.94 Aligned_cols=104 Identities=8% Similarity=-0.017 Sum_probs=67.3
Q ss_pred hhhhh-hhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhC------------CChhh
Q 003201 65 FGEMV-MCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCS------------LRVAN 131 (840)
Q Consensus 65 F~~Vi-~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~------------I~~~~ 131 (840)
|...| ++-+....+.---..+-++-..+.+++..--++-.|+|=++++||.+.-+||..+-. |...+
T Consensus 14 ~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~ 93 (171)
T 1juq_A 14 LESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFR 93 (171)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHH
Confidence 33444 333333334444456677877788888888999999999999999999999887654 23344
Q ss_pred hHHHHHHHHHhcc--CCCChHHHHHHHHHHHHHHhhcCC
Q 003201 132 LVEYLVGPLGLGL--KDNNSYVRTVAVIGVLKLYHISAP 168 (840)
Q Consensus 132 i~e~l~~~v~~~L--~d~~pyVRK~Aala~~kl~~~~p~ 168 (840)
+.+.+..-+.... ...++-||+++...+..-....+.
T Consensus 94 Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 132 (171)
T 1juq_A 94 FLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE 132 (171)
T ss_dssp HHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 4444443332211 124689999988777766655543
No 134
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=49.42 E-value=48 Score=31.62 Aligned_cols=50 Identities=12% Similarity=0.114 Sum_probs=34.7
Q ss_pred HHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccC
Q 003201 156 VIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (840)
Q Consensus 156 ala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~ 208 (840)
.+.+.-+.+..++.. .+.+..|++. +..+||.|+..|+.+|..+.++.+.
T Consensus 36 ~leicD~I~~~~~~~--keA~ral~kr-l~~~n~~vql~AL~LLd~~vkNcG~ 85 (163)
T 1x5b_A 36 IMDICDKVGSTPNGA--KDCLKAIMKR-VNHKVPHVALQALTLLGACVANCGK 85 (163)
T ss_dssp HHHHHHHHHHSSSHH--HHHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhCCCccH--HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 445555555555443 3455667776 5889999999999999888875443
No 135
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=48.39 E-value=9.2 Score=38.79 Aligned_cols=62 Identities=6% Similarity=-0.028 Sum_probs=47.4
Q ss_pred cCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcc
Q 003201 109 CKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (840)
Q Consensus 109 l~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~ 170 (840)
+.|+|+.+|=.|+-.+-.-....-.+.+...+..++.|++.||||..+=++--+++.+|+.+
T Consensus 140 ~~s~~~w~rR~ai~~~l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v 201 (232)
T 3jxy_A 140 IASDNIWLQRAAILFQLKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVV 201 (232)
T ss_dssp HHSSCHHHHHHHHHTTTTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHH
Confidence 35789988888876543333333344666677888999999999999999999999998876
No 136
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=48.38 E-value=73 Score=31.98 Aligned_cols=82 Identities=17% Similarity=0.175 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhC------------CChhhhHHHHHHHHHhccCCC
Q 003201 80 KKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCS------------LRVANLVEYLVGPLGLGLKDN 147 (840)
Q Consensus 80 KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~------------I~~~~i~e~l~~~v~~~L~d~ 147 (840)
---.-|.++-..+.+++.+--++.+|+|=++++||.+.-+||..|-. |...++.+.+..-+. ...
T Consensus 25 dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~---~~~ 101 (226)
T 3zyq_A 25 DWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLK---RQV 101 (226)
T ss_dssp CHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHH---HCC
T ss_pred CHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhc---cCC
Confidence 33455667777777888889999999999999999999999887654 345566655544443 245
Q ss_pred ChHHHHHHHHHHHHHHh
Q 003201 148 NSYVRTVAVIGVLKLYH 164 (840)
Q Consensus 148 ~pyVRK~Aala~~kl~~ 164 (840)
++-||+++..-+..-..
T Consensus 102 ~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 102 EVNVRNKILYLIQAWAH 118 (226)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 67888887665554443
No 137
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=48.29 E-value=16 Score=36.67 Aligned_cols=66 Identities=9% Similarity=-0.008 Sum_probs=50.4
Q ss_pred HHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcc
Q 003201 105 LQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (840)
Q Consensus 105 l~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~ 170 (840)
+.+=+.|+|+.+|=.|+-..=.-....-.+.+.+.+..++.|++-||||..+=++--+++.+|+.+
T Consensus 129 i~~W~~s~~~w~rR~ai~~~l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v 194 (220)
T 2b6c_A 129 FALFYGAENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWV 194 (220)
T ss_dssp HHHHTTCSSHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHH
Confidence 445567899999988866443222333446667777779999999999999999999999999876
No 138
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=46.60 E-value=3e+02 Score=29.40 Aligned_cols=155 Identities=12% Similarity=0.234 Sum_probs=87.2
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHhcCCCChhH
Q 003201 179 LKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNE 258 (840)
Q Consensus 179 L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~y~p~~~~e 258 (840)
+-+. ..-++-.|.+-|+..+.|+..+ |+.++...+.. +
T Consensus 169 fF~y-v~~~~FdiasDAf~TfkelLt~----------------Hk~lvaefL~~----------------------n--- 206 (341)
T 1upk_A 169 FFRY-VEMSTFDIASDAFATFKDLLTR----------------HKLLSAEFLEQ----------------------H--- 206 (341)
T ss_dssp HHHH-TTCSSHHHHHHHHHHHHHHHHS----------------SHHHHHHHHHH----------------------T---
T ss_pred HHHH-hcCCCchHHHHHHHHHHHHHhc----------------cHHHHHHHHHH----------------------h---
Confidence 3344 4678889999999999888542 33322222221 1
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHhccCC--CchhHHHHH---HHHHHHHHHhhcCCCchhHHHHHHHHHHHHhhC
Q 003201 259 IFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLS--MTDVHQQVY---ERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA 333 (840)
Q Consensus 259 ~~~il~~l~~~L~~~n~aVvleaik~il~l~~~--~~~~~~~~l---~rl~~~L~~lLss~~~nirY~aL~~l~~l~~~~ 333 (840)
-..+......+|+|.|.-.-..++|++-.+-.. +..+-...+ +.+ ..++.+|.+++.+|||-|...+...++ +
T Consensus 207 yd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nL-kl~M~LL~d~sk~Iq~EAFhVFKvFVA-N 284 (341)
T 1upk_A 207 YDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENL-KLMMNLLRDKSRNIQFEAFHVFKVFVA-N 284 (341)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHH-C
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHH-HHHHHHhcCchhchhhhhhhheeeeee-C
Confidence 012223333456666666666666665544211 111111110 111 135678999999999999988876664 3
Q ss_pred CCcccccccEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcC--CHHHHHH---HHHHHHHH
Q 003201 334 PFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANV--DIPIARE---SIRAVGKI 400 (840)
Q Consensus 334 p~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~--d~~~~~~---~i~aI~~l 400 (840)
| +.|.-|. +||.+ |=+.+++=|..+..+. |..|..+ +|+.|..+
T Consensus 285 P--------------~K~~~I~----~IL~~-----Nr~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I~~L 333 (341)
T 1upk_A 285 P--------------NKTQPIL----DILLK-----NQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDL 333 (341)
T ss_dssp S--------------SCCHHHH----HHHHH-----THHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHTC
T ss_pred C--------------CCChHHH----HHHHH-----HHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHhC
Confidence 3 3443333 33433 6666676667777665 6778776 66666544
No 139
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=45.82 E-value=88 Score=31.15 Aligned_cols=76 Identities=13% Similarity=0.043 Sum_probs=54.8
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhC------------CChhhhHHHHHHHHHhccCCCChH
Q 003201 83 CYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCS------------LRVANLVEYLVGPLGLGLKDNNSY 150 (840)
Q Consensus 83 ~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~------------I~~~~i~e~l~~~v~~~L~d~~py 150 (840)
..+.++-..+.+++.+--++-.|+|=++++||.+.-+||..+-. |...++.+.+..-+.+ .+++-
T Consensus 25 ~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~---~~~~~ 101 (220)
T 1dvp_A 25 SILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLES---TPHEN 101 (220)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHH---CSCHH
T ss_pred HHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcC---CCcHH
Confidence 34666666777788888999999999999999999999877654 3445566665554433 45788
Q ss_pred HHHHHHHHHHH
Q 003201 151 VRTVAVIGVLK 161 (840)
Q Consensus 151 VRK~Aala~~k 161 (840)
||+++.--+..
T Consensus 102 Vk~kil~li~~ 112 (220)
T 1dvp_A 102 VRQKMLELVQT 112 (220)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98887654443
No 140
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=42.97 E-value=1.1e+02 Score=28.58 Aligned_cols=81 Identities=11% Similarity=0.043 Sum_probs=51.6
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhhCCCcccccccEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhh-
Q 003201 304 KAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYA- 382 (840)
Q Consensus 304 ~~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~- 382 (840)
...|.+-|.+++|++++.+|..+..+++.....|..++.. +.=|+-|.+++++. |.
T Consensus 50 ~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias------------~~Fl~eL~kl~~~k-----------~~~ 106 (149)
T 3g2s_A 50 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGK------------FRFLNELIKVVSPK-----------YLG 106 (149)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTS------------HHHHHHHHHHHCTT-----------TTG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhh------------HHHHHHHHHHHccc-----------ccC
Confidence 3345556777899999999999999998887655444321 11122233333222 22
Q ss_pred hcCCHHHHHHHHHHHHHHHhhcCCh
Q 003201 383 ANVDIPIARESIRAVGKIALQQYDV 407 (840)
Q Consensus 383 ~~~d~~~~~~~i~aI~~la~k~~~~ 407 (840)
...+..++.++..-|..-+..|++.
T Consensus 107 ~~~~~~Vk~kil~li~~W~~~f~~~ 131 (149)
T 3g2s_A 107 SRTSEKVKNKILELLYSWTVGLPEE 131 (149)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 2357788888888888888877753
No 141
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=42.49 E-value=69 Score=29.63 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Q 003201 155 AVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (840)
Q Consensus 155 Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~ 207 (840)
..+-+.-+.+..|+.- .+.+..|++. +..+||.|+..|+.+|..+.++.+
T Consensus 25 ~ileicD~I~~~~~~~--k~a~rai~Kr-l~~~n~~~ql~AL~LLe~~vkNcG 74 (140)
T 3ldz_A 25 LILDICDKVGQSRTGP--KDCLRSIMRR-VNHKDPHVAMQALTLLGACVSNCG 74 (140)
T ss_dssp HHHHHHHHHTTSTTHH--HHHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCcCH--HHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhcC
Confidence 3455555555555433 3445666676 588999999999999887776544
No 142
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=42.45 E-value=71 Score=29.90 Aligned_cols=85 Identities=9% Similarity=-0.078 Sum_probs=57.0
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCC---Chh----hh-HHHHHHHHHhccCC------CC
Q 003201 83 CYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RVA----NL-VEYLVGPLGLGLKD------NN 148 (840)
Q Consensus 83 ~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I---~~~----~i-~e~l~~~v~~~L~d------~~ 148 (840)
+.+-++-..+.+++..--++-+|+|=++++||.+.-+||..+-.+ +.+ ++ ...+...+.+.+.+ .+
T Consensus 21 ~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~ 100 (148)
T 1mhq_A 21 AIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWAT 100 (148)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCC
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCC
Confidence 455666667777888889999999999999999999998876442 111 11 23344445666653 36
Q ss_pred hHHHHHHHHHHHHHHhhcC
Q 003201 149 SYVRTVAVIGVLKLYHISA 167 (840)
Q Consensus 149 pyVRK~Aala~~kl~~~~p 167 (840)
+-||+++...+..-....+
T Consensus 101 ~~Vk~kil~li~~W~~~f~ 119 (148)
T 1mhq_A 101 GKVKGRVIEILFSWTVWFP 119 (148)
T ss_dssp HHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 7888887665555444433
No 143
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=41.32 E-value=1.2e+02 Score=28.28 Aligned_cols=100 Identities=8% Similarity=-0.085 Sum_probs=66.8
Q ss_pred hhhhh-hhccCCCcchHHHHHHHHHHhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhC------------CChhh
Q 003201 65 FGEMV-MCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCS------------LRVAN 131 (840)
Q Consensus 65 F~~Vi-~l~~S~d~~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~------------I~~~~ 131 (840)
|.+.| ++-+....+.---+-+-++-..+.+++..--++-.|+|=++++||.+.-+||..|-. |...+
T Consensus 12 ~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~ 91 (149)
T 3g2s_A 12 LEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFR 91 (149)
T ss_dssp HHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHH
Confidence 44444 333333333444466778888888899999999999999999999999998876644 23344
Q ss_pred hHHHHHHHHHhccCC------CChHHHHHHHHHHHHHHhhcCC
Q 003201 132 LVEYLVGPLGLGLKD------NNSYVRTVAVIGVLKLYHISAP 168 (840)
Q Consensus 132 i~e~l~~~v~~~L~d------~~pyVRK~Aala~~kl~~~~p~ 168 (840)
+.+. +.+.+.+ .++-||++..-.+..-...+|+
T Consensus 92 Fl~e----L~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 92 FLNE----LIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp HHHH----HHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHH----HHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 4444 4455543 4678888887766665555544
No 144
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=39.81 E-value=3.3e+02 Score=29.01 Aligned_cols=133 Identities=15% Similarity=0.098 Sum_probs=80.0
Q ss_pred cCCCcchHHHHHHHHHHhccCCCchHHHH-----HHHHHhhcCCCChhhHhHHHHHhhCCChh-----hhH--HHHHHHH
Q 003201 73 ATSDIVLKKMCYLYVGNYAKVNPDLALLT-----INFLQRDCKDEDPMIRGLALRSLCSLRVA-----NLV--EYLVGPL 140 (840)
Q Consensus 73 ~S~d~~~KkL~YLyl~~~~~~~~dl~lL~-----iNtl~KDl~~~Np~ir~LALr~l~~I~~~-----~i~--e~l~~~v 140 (840)
.+.+-..||-.-.-|..++..+.+++-=- ++.|.+=..+...-+.+-|||++..+..- .++ ...+.-|
T Consensus 128 ~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~l 207 (339)
T 3dad_A 128 YSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWL 207 (339)
T ss_dssp HHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHH
Confidence 34444555555555555444555543322 23344444555788899999999998654 444 3456666
Q ss_pred HhccCCCChHHHHHHHHHHHHHHhhcCCcc-------c-------CCCchHHHHHHHhc---CCChhHHHHHHHHHHHHH
Q 003201 141 GLGLKDNNSYVRTVAVIGVLKLYHISAPTC-------I-------DADFPPTLKHLMLN---DPDPQVVANCLSALQEIW 203 (840)
Q Consensus 141 ~~~L~d~~pyVRK~Aala~~kl~~~~p~~~-------~-------~~~~~~~L~~lLL~---D~d~~Vv~~al~~L~eI~ 203 (840)
-..+.+..+-|-|+|.-=+..+...++... . .+-|. .|..+ |. ..|..+..+|+++++.+.
T Consensus 208 yslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~-~Lv~~-L~~~~~~D~elq~~amtLIN~lL 285 (339)
T 3dad_A 208 YTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWA-NLVSI-LEEKNGADPELLVYTVTLINKTL 285 (339)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTH-HHHHH-HTTTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHH-HHHHH-HhccCCCCHHHHHHHHHHHHHHH
Confidence 667777888888877655555544443221 0 01133 33344 45 578899999999999887
Q ss_pred hhcc
Q 003201 204 SLEA 207 (840)
Q Consensus 204 ~~~~ 207 (840)
..-|
T Consensus 286 ~~ap 289 (339)
T 3dad_A 286 AALP 289 (339)
T ss_dssp HHCS
T ss_pred hcCC
Confidence 6544
No 145
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=37.87 E-value=1.3e+02 Score=28.87 Aligned_cols=51 Identities=14% Similarity=0.057 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Q 003201 154 VAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (840)
Q Consensus 154 ~Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~ 207 (840)
...+.+.-+.+..++.. .+....|++. +..+|+.|+..|+.+|..+.++.+
T Consensus 32 ~~ileicD~I~~~~~~~--k~A~ral~kr-l~~~n~~vql~AL~LLd~~vkNCG 82 (171)
T 1juq_A 32 EYIIGFCDQINKELEGP--QIAVRLLAHK-IQSPQEWEALQALTVLEACMKNCG 82 (171)
T ss_dssp HHHHHHHHHHHHSTTHH--HHHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHcCCccH--HHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHcC
Confidence 44566666666666543 3456667776 589999999999999988877544
No 146
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=36.89 E-value=87 Score=29.28 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhcCCcccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccC
Q 003201 155 AVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (840)
Q Consensus 155 Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~ 208 (840)
+.+-+.-+.+..|+.- .+.+..|++- +..+||.|+..|+.+|..+.++.+.
T Consensus 21 ~~leicD~I~~~~~~~--k~a~rai~kr-l~~~n~~vql~AL~LLe~~vkNCG~ 71 (148)
T 1mhq_A 21 AIQNFCEQVNTDPNGP--THAPWLLAHK-IQSPQEKEALYALTVLEMCMNHCGE 71 (148)
T ss_dssp HHHHHHHHHHHSSHHH--HHHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHcCCccH--HHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHcCH
Confidence 3445555555555333 3345667676 5899999999999999888875443
No 147
>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair, DNA binding protein; 3.30A {Mus musculus} PDB: 3s4z_A* 3s4w_A
Probab=35.67 E-value=7.8e+02 Score=31.10 Aligned_cols=52 Identities=17% Similarity=0.025 Sum_probs=39.9
Q ss_pred hccCCcHHHHHHHHHHHhHHhhcCChhHHHHHHHHHHhhccCCChHHHhHHHHH
Q 003201 493 WEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALFY 546 (840)
Q Consensus 493 ~~~e~~~~vk~~lLta~~Kl~~~~p~e~~~~l~~vL~~~~~d~d~dVrdRA~~Y 546 (840)
+..-+ ..+-..+++|+.=|.-.. ...++-+..+|..+..+.+.+.|.-|..=
T Consensus 487 l~~lp-~~~a~~Ll~al~PLik~s-~~lrD~lIlvLRKamf~re~~~R~~AV~G 538 (1308)
T 3s51_A 487 LTFLP-LQTVQGLLKAVQPLLKIS-MSMRDSLILVLRKAMFASQLDARKSAVAG 538 (1308)
T ss_dssp TTTSC-HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HhcCC-HHHHHHHHHHHhHHHhcC-HHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 33344 666667888888876545 46899999999999999999999988753
No 148
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=35.60 E-value=21 Score=44.18 Aligned_cols=102 Identities=10% Similarity=0.026 Sum_probs=72.2
Q ss_pred hhhhhhhhccCCCc-chHHH-HHHHHHHhcc--CCCchHHHHHHHHHhhcC-CCChhhHhHHHHHhhCC-------Chhh
Q 003201 64 VFGEMVMCSATSDI-VLKKM-CYLYVGNYAK--VNPDLALLTINFLQRDCK-DEDPMIRGLALRSLCSL-------RVAN 131 (840)
Q Consensus 64 lF~~Vi~l~~S~d~-~~KkL-~YLyl~~~~~--~~~dl~lL~iNtl~KDl~-~~Np~ir~LALr~l~~I-------~~~~ 131 (840)
+.|.+..+...+|. ++.++ .+..+..++. ..++.+-.+++++..-.+ ++|- .|..+|.++-.+ -.++
T Consensus 761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~ 839 (997)
T 1vsy_5 761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEE 839 (997)
T ss_dssp TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTT
T ss_pred HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHH
Confidence 34444455555555 67777 6665555532 245566678899987776 6777 999998885432 2233
Q ss_pred hHHHHHHHHHhccCCCC-hHHHHHHHHHHHHHHhhc
Q 003201 132 LVEYLVGPLGLGLKDNN-SYVRTVAVIGVLKLYHIS 166 (840)
Q Consensus 132 i~e~l~~~v~~~L~d~~-pyVRK~Aala~~kl~~~~ 166 (840)
-.+.+...|.++|.|+. .-||..|+-++.-+.+-.
T Consensus 840 ~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 840 EKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp HHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence 34678889999999999 999999999998887765
No 149
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=33.55 E-value=58 Score=36.58 Aligned_cols=71 Identities=14% Similarity=0.165 Sum_probs=50.6
Q ss_pred CchHHHHHHHHHhhcC------CCChhhHhHHHHHhhCC-----ChhhhHHHH--HHHHHhccCCCChHHHHHHHHHHHH
Q 003201 95 PDLALLTINFLQRDCK------DEDPMIRGLALRSLCSL-----RVANLVEYL--VGPLGLGLKDNNSYVRTVAVIGVLK 161 (840)
Q Consensus 95 ~dl~lL~iNtl~KDl~------~~Np~ir~LALr~l~~I-----~~~~i~e~l--~~~v~~~L~d~~pyVRK~Aala~~k 161 (840)
-++.-..++-+.++-. +.||.+-|.|..-+|.+ +...+++.+ =..|.+++.|+++-||+-|..|+.|
T Consensus 394 ~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQk 473 (480)
T 1ho8_A 394 YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQA 473 (480)
T ss_dssp GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3454566666654432 35788889998888875 334455543 4568889999999999999999999
Q ss_pred HHhh
Q 003201 162 LYHI 165 (840)
Q Consensus 162 l~~~ 165 (840)
+...
T Consensus 474 lm~~ 477 (480)
T 1ho8_A 474 IIGY 477 (480)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8643
No 150
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=29.65 E-value=2.2e+02 Score=26.61 Aligned_cols=84 Identities=10% Similarity=0.005 Sum_probs=55.1
Q ss_pred chHHHHHHHHHHhccCCCchHHHHHHHHHhhcC-CCChhhHhHHHHHhhC------------CChhhhHHHHHHHHHhcc
Q 003201 78 VLKKMCYLYVGNYAKVNPDLALLTINFLQRDCK-DEDPMIRGLALRSLCS------------LRVANLVEYLVGPLGLGL 144 (840)
Q Consensus 78 ~~KkL~YLyl~~~~~~~~dl~lL~iNtl~KDl~-~~Np~ir~LALr~l~~------------I~~~~i~e~l~~~v~~~L 144 (840)
+.---.-+-++-..+.+++..--++-+|+|=++ ++||.+.-+||..+-. |...++.+.+ +.+.+
T Consensus 31 ~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~---Lvk~~ 107 (157)
T 1elk_A 31 SEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESV---LVRTI 107 (157)
T ss_dssp SCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHH---THHHH
T ss_pred CcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHH---HHHHh
Confidence 333344566777777778888999999999998 5899988888876643 3334444441 23333
Q ss_pred ---CCCChHHHHHHHHHHHHHHh
Q 003201 145 ---KDNNSYVRTVAVIGVLKLYH 164 (840)
Q Consensus 145 ---~d~~pyVRK~Aala~~kl~~ 164 (840)
.+++.-||+++...+..-..
T Consensus 108 ~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 108 LPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp STTTCCCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHHHH
Confidence 23456898888766654443
No 151
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=24.49 E-value=5.3e+02 Score=27.23 Aligned_cols=89 Identities=19% Similarity=0.282 Sum_probs=58.7
Q ss_pred cCCchHHHHHHHHHHcCcCCCCCC-hHHHHHHHH-------HhhccCCcHHHHHHHHH---HHh----HHhhcCChhHHH
Q 003201 458 NVQEPKAKAALIWMLGEYSQDMQD-APYILESLT-------ENWEEEPSAEVRLHLLT---AVM----KCFFKRPPETQK 522 (840)
Q Consensus 458 ~i~~~~ak~a~iwilGEy~~~i~~-~~~il~~l~-------~~~~~e~~~~vk~~lLt---a~~----Kl~~~~p~e~~~ 522 (840)
...+|++...+.-++...++.+.+ .|.+++.+. ++=.++- |+-|..... ++. ..++.-|++..+
T Consensus 88 ~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~ey-PehR~~Ff~LL~ai~~~cF~al~~lp~~~fk 166 (321)
T 1w9c_A 88 AAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEY-PEHRTNFFLLLQAVNSHCFPAFLAIPPTQFK 166 (321)
T ss_dssp GGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCS-HHHHHHHHHHHHHHHHHCTTHHHHSCHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccC-hHHHHHHHHHHHHHHHHhHHHHHcCCHHHHH
Confidence 456788888888888888877654 777776543 2212333 888876433 333 233445665545
Q ss_pred HHHHHHHhhccCCChHHHhHHHHHH
Q 003201 523 VLGAALAAGLADFHQDVHDRALFYH 547 (840)
Q Consensus 523 ~l~~vL~~~~~d~d~dVrdRA~~Y~ 547 (840)
.+-.-+-|+....+.+|-|.|....
T Consensus 167 lvidsiiWa~kH~~r~V~e~gL~il 191 (321)
T 1w9c_A 167 LVLDSIIWAFKHTMRNVADTGLQIL 191 (321)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHH
Confidence 5555666888899999999998765
No 152
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=24.38 E-value=2.3e+02 Score=28.27 Aligned_cols=73 Identities=12% Similarity=0.152 Sum_probs=46.2
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhhCCCcccccccEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhh-h
Q 003201 305 APLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYA-A 383 (840)
Q Consensus 305 ~~L~~lLss~~~nirY~aL~~l~~l~~~~p~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~-~ 383 (840)
..|.+-|.++++++++.+|..+..+++.....|..++.. + +.+++|...+ .
T Consensus 48 ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias------------~----------------~fl~~l~~l~~~ 99 (226)
T 3zyq_A 48 NSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVAN------------K----------------QTMEELKDLLKR 99 (226)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSS------------H----------------HHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhcc------------H----------------HHHHHHHHHhcc
Confidence 345555677899999999999999998876544443321 1 1112222222 2
Q ss_pred cCCHHHHHHHHHHHHHHHhhcC
Q 003201 384 NVDIPIARESIRAVGKIALQQY 405 (840)
Q Consensus 384 ~~d~~~~~~~i~aI~~la~k~~ 405 (840)
..+..++.++..-|..-++.|+
T Consensus 100 ~~~~~Vk~kil~li~~W~~~f~ 121 (226)
T 3zyq_A 100 QVEVNVRNKILYLIQAWAHAFR 121 (226)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHhC
Confidence 3567777887777777777775
No 153
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=23.68 E-value=2.4e+02 Score=26.38 Aligned_cols=50 Identities=10% Similarity=0.021 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhcCCcccCCCchHHHHHHHhc-CCChhHHHHHHHHHHHHHhhcc
Q 003201 155 AVIGVLKLYHISAPTCIDADFPPTLKHLMLN-DPDPQVVANCLSALQEIWSLEA 207 (840)
Q Consensus 155 Aala~~kl~~~~p~~~~~~~~~~~L~~lLL~-D~d~~Vv~~al~~L~eI~~~~~ 207 (840)
..+.+.-+.+..++.. .+.+..|++. +. .+|+.|+..|+.+|..+.++.+
T Consensus 36 ~~leicD~I~~~~~~~--k~a~ral~kr-l~~~~n~~v~l~AL~LLd~~vkNcG 86 (157)
T 1elk_A 36 LNMEICDIINETEEGP--KDALRAVKKR-IVGNKNFHEVMLALTVLETCVKNCG 86 (157)
T ss_dssp HHHHHHHHHHHSSSHH--HHHHHHHHHH-HTTCCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCCCccH--HHHHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHhC
Confidence 3445555555555443 3455667776 45 6899999999999988887654
No 154
>2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens}
Probab=23.38 E-value=44 Score=23.29 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=16.9
Q ss_pred CCCCChHHHHHHhhccCcc
Q 003201 724 KAILDPGTFQQKWRQLPIS 742 (840)
Q Consensus 724 ~~~l~~~~Fq~~W~~l~~~ 742 (840)
++.++-++|...|+-||+.
T Consensus 11 epPLSQETFsdLW~LLP~~ 29 (39)
T 2k8f_B 11 EPPLSQETFSDLWKLLPEN 29 (39)
T ss_dssp CCCCSCHHHHHHHHTCSSS
T ss_pred CCCccHHHHHHHHHhCCcc
Confidence 4678899999999999987
No 155
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=20.63 E-value=5.3e+02 Score=27.13 Aligned_cols=66 Identities=9% Similarity=0.173 Sum_probs=30.7
Q ss_pred HHHHHHHHhhccCCcHHHHHHHHHHHhHHhhcC-ChhHHHHHHHHHHhhccCCChHHHhHHHHHHHHccC
Q 003201 484 YILESLTENWEEEPSAEVRLHLLTAVMKCFFKR-PPETQKVLGAALAAGLADFHQDVHDRALFYHRLLQY 552 (840)
Q Consensus 484 ~il~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~-p~e~~~~l~~vL~~~~~d~d~dVrdRA~~Y~rLL~~ 552 (840)
+.|..++..- ... +.+|.=++.-+.++|... ++ ..+.-..+-+...++.++++|.=+.+..++++.
T Consensus 161 ~~L~~ly~~~-~~d-~~~k~Kvl~li~d~f~~~~~~-~~~~~~~~~kR~~e~~~~~~q~w~~~~q~~iq~ 227 (315)
T 3qml_C 161 VVLQNVYERN-NKD-KQLQIKVLELISKILKADMYE-NDDTNLILFKRNAENWSSNLQEWANEFQEMVQN 227 (315)
T ss_dssp HHHHHHHHHT-TTC-HHHHHHHHHHHHHHHHHHTTC--------------------CHHHHHHHHHHHTC
T ss_pred HHHHHHHccC-CCC-HHHHHHHHHHHHHHccccccc-ccccccchhhhcccccCchHHHHHHHHHHHHhc
Confidence 4444444432 336 899999999999999632 21 111111222222334468888777777666553
No 156
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=20.06 E-value=2.7e+02 Score=33.22 Aligned_cols=74 Identities=11% Similarity=0.041 Sum_probs=58.0
Q ss_pred HHHHhccCC--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhhcCchhhHHHHHHH
Q 003201 360 EMLTAVANE--SNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLV 433 (840)
Q Consensus 360 diL~~L~n~--~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~~~~~v~~Ll~LL~~~~~~v~~e~v~~i 433 (840)
.++.+++.. .|++.-+.+|...+.+..+..+...++.+-.|+...|....+..+|+.++..+...+..+++..+
T Consensus 14 ~lI~rlge~~~~s~~~~l~~L~~~l~~~l~~~r~~i~~~l~~~~~~~P~Kt~vyAaLVgllN~k~pe~G~~lv~~l 89 (771)
T 1h2v_C 14 SLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAM 89 (771)
T ss_dssp HHHHTTTSSCSSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCcchHHHHHHHHHHcCChhHHHHHHHHH
Confidence 456667653 66778888888887766677899999999999999997777889999999988766666665543
Done!