Query 003203
Match_columns 839
No_of_seqs 595 out of 4105
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 19:01:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003203.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003203hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.3E-76 9.2E-81 673.5 38.7 689 3-788 126-849 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.9E-65 4.2E-70 621.3 51.5 746 29-835 178-1005(1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.5E-41 3.2E-46 354.6 20.5 272 40-313 1-284 (287)
4 PLN00113 leucine-rich repeat r 99.9 1.3E-24 2.7E-29 266.0 19.6 369 383-786 92-493 (968)
5 PLN00113 leucine-rich repeat r 99.9 1.2E-24 2.7E-29 266.1 18.8 264 385-663 189-465 (968)
6 PLN03210 Resistant to P. syrin 99.9 3.2E-22 6.9E-27 244.2 19.9 337 404-786 556-911 (1153)
7 KOG0444 Cytoskeletal regulator 99.9 8.9E-24 1.9E-28 218.6 -4.6 319 382-723 53-379 (1255)
8 KOG0444 Cytoskeletal regulator 99.8 5.1E-23 1.1E-27 213.1 -3.9 342 385-787 33-381 (1255)
9 KOG4194 Membrane glycoprotein 99.8 9.2E-22 2E-26 202.7 3.6 311 385-715 103-425 (873)
10 KOG4194 Membrane glycoprotein 99.8 1.1E-20 2.3E-25 195.0 5.8 339 382-743 76-427 (873)
11 KOG0472 Leucine-rich repeat pr 99.8 7.3E-21 1.6E-25 187.7 -7.3 237 386-661 70-308 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 3.3E-20 7.1E-25 183.1 -4.9 144 388-537 164-310 (565)
13 KOG0618 Serine/threonine phosp 99.7 7.7E-19 1.7E-23 191.4 -1.7 240 500-780 242-488 (1081)
14 KOG0618 Serine/threonine phosp 99.6 1.4E-17 3E-22 181.7 -1.3 347 390-749 4-423 (1081)
15 KOG0617 Ras suppressor protein 99.6 8.9E-18 1.9E-22 146.6 -3.8 168 396-579 23-193 (264)
16 KOG0617 Ras suppressor protein 99.5 2.4E-16 5.1E-21 137.8 -3.5 157 379-539 28-188 (264)
17 PRK04841 transcriptional regul 99.5 6.3E-13 1.4E-17 162.3 24.8 297 30-361 9-333 (903)
18 PRK15387 E3 ubiquitin-protein 99.5 2.4E-13 5.2E-18 154.1 16.5 236 383-661 221-456 (788)
19 PRK15387 E3 ubiquitin-protein 99.5 1.1E-13 2.4E-18 156.9 13.7 254 386-717 203-456 (788)
20 PRK15370 E3 ubiquitin-protein 99.4 6E-13 1.3E-17 152.0 13.1 243 386-661 180-426 (754)
21 COG2909 MalT ATP-dependent tra 99.4 9E-12 2E-16 136.7 18.6 298 31-363 15-341 (894)
22 PRK15370 E3 ubiquitin-protein 99.4 2.2E-12 4.7E-17 147.5 13.0 224 382-635 197-426 (754)
23 TIGR03015 pepcterm_ATPase puta 99.4 1E-10 2.2E-15 120.8 24.1 183 53-238 40-242 (269)
24 PRK00411 cdc6 cell division co 99.3 1.5E-10 3.3E-15 126.5 24.1 290 33-339 28-357 (394)
25 KOG4658 Apoptotic ATPase [Sign 99.3 7.1E-13 1.5E-17 153.8 5.2 228 385-666 546-786 (889)
26 PF01637 Arch_ATPase: Archaeal 99.3 5.1E-12 1.1E-16 127.8 10.4 194 37-233 1-233 (234)
27 TIGR02928 orc1/cdc6 family rep 99.3 7.7E-10 1.7E-14 119.7 25.5 292 34-340 14-350 (365)
28 PF05729 NACHT: NACHT domain 99.2 1E-10 2.2E-15 111.1 12.7 144 57-205 1-164 (166)
29 KOG4237 Extracellular matrix p 99.2 1.5E-12 3.2E-17 129.5 -3.0 259 381-661 64-357 (498)
30 TIGR00635 ruvB Holliday juncti 99.1 4.1E-09 8.8E-14 110.8 21.3 272 34-340 3-289 (305)
31 PRK00080 ruvB Holliday junctio 99.1 2.5E-09 5.4E-14 112.9 19.1 278 30-340 20-310 (328)
32 KOG4237 Extracellular matrix p 99.1 2.7E-12 5.9E-17 127.7 -3.5 140 394-536 56-200 (498)
33 COG3899 Predicted ATPase [Gene 99.1 3.1E-09 6.7E-14 124.5 19.5 308 36-361 1-387 (849)
34 KOG1259 Nischarin, modulator o 99.1 2.4E-11 5.2E-16 116.4 -0.1 135 430-577 283-417 (490)
35 PF14580 LRR_9: Leucine-rich r 99.1 2.3E-10 4.9E-15 106.2 6.2 131 428-568 16-149 (175)
36 KOG4341 F-box protein containi 99.1 1E-11 2.3E-16 124.7 -2.9 285 474-798 162-457 (483)
37 cd00116 LRR_RI Leucine-rich re 99.0 8.1E-11 1.7E-15 125.2 3.3 176 386-570 25-232 (319)
38 cd00116 LRR_RI Leucine-rich re 99.0 1E-10 2.3E-15 124.4 3.4 83 428-510 20-119 (319)
39 PRK13342 recombination factor 99.0 2.7E-08 6E-13 108.3 22.3 182 29-236 6-198 (413)
40 COG2256 MGS1 ATPase related to 99.0 8E-09 1.7E-13 104.5 14.7 176 28-230 17-208 (436)
41 PF14580 LRR_9: Leucine-rich r 99.0 4.6E-10 1E-14 104.2 4.6 123 441-576 7-130 (175)
42 KOG4341 F-box protein containi 99.0 1.2E-11 2.5E-16 124.3 -6.8 287 477-800 139-433 (483)
43 KOG0532 Leucine-rich repeat (L 98.9 4.5E-11 9.9E-16 124.6 -3.4 176 387-580 78-255 (722)
44 PTZ00112 origin recognition co 98.9 4.2E-08 9E-13 109.2 18.4 206 32-238 752-986 (1164)
45 PRK06893 DNA replication initi 98.9 2.1E-08 4.6E-13 99.6 13.5 183 25-236 6-205 (229)
46 PRK12402 replication factor C 98.8 6.9E-08 1.5E-12 103.3 16.5 205 28-233 8-225 (337)
47 PRK14949 DNA polymerase III su 98.8 5.8E-08 1.3E-12 110.0 15.7 186 30-233 11-219 (944)
48 PRK07003 DNA polymerase III su 98.8 1.9E-07 4.1E-12 103.8 19.0 183 30-234 11-221 (830)
49 TIGR03420 DnaA_homol_Hda DnaA 98.8 6.3E-08 1.4E-12 97.0 14.0 180 30-237 10-204 (226)
50 PLN03025 replication factor C 98.8 8.3E-08 1.8E-12 100.9 15.0 189 26-230 4-196 (319)
51 KOG3207 Beta-tubulin folding c 98.8 8.6E-10 1.9E-14 111.8 -0.3 188 382-575 119-317 (505)
52 PRK14961 DNA polymerase III su 98.8 3.6E-07 7.7E-12 97.7 19.2 180 30-231 11-217 (363)
53 PRK00440 rfc replication facto 98.8 2E-07 4.4E-12 98.9 17.1 188 27-231 9-200 (319)
54 PRK04195 replication factor C 98.7 6E-07 1.3E-11 99.9 20.6 185 27-234 6-202 (482)
55 KOG1259 Nischarin, modulator o 98.7 1.2E-09 2.5E-14 105.0 -0.9 132 381-516 281-415 (490)
56 PF05496 RuvB_N: Holliday junc 98.7 1.6E-07 3.5E-12 88.9 13.2 183 28-239 17-226 (233)
57 PRK14960 DNA polymerase III su 98.7 2.1E-07 4.5E-12 102.4 15.7 180 30-231 10-216 (702)
58 PRK14962 DNA polymerase III su 98.7 5E-07 1.1E-11 98.6 18.5 191 29-237 8-222 (472)
59 PRK12323 DNA polymerase III su 98.7 1.7E-07 3.7E-12 102.7 14.7 181 30-232 11-223 (700)
60 COG1474 CDC6 Cdc6-related prot 98.7 1.2E-06 2.6E-11 92.4 20.6 200 35-234 17-238 (366)
61 PF13401 AAA_22: AAA domain; P 98.7 4.6E-08 9.9E-13 88.5 8.8 115 56-172 4-125 (131)
62 PRK09112 DNA polymerase III su 98.7 5E-07 1.1E-11 94.9 16.8 200 29-234 17-240 (351)
63 COG3903 Predicted ATPase [Gene 98.7 3E-08 6.5E-13 101.3 7.3 286 56-361 14-315 (414)
64 PRK14956 DNA polymerase III su 98.7 1.3E-07 2.9E-12 101.1 12.2 198 29-230 12-218 (484)
65 PRK14963 DNA polymerase III su 98.7 5.5E-07 1.2E-11 99.2 17.4 198 30-231 9-214 (504)
66 PRK06645 DNA polymerase III su 98.7 5.4E-07 1.2E-11 98.7 17.2 180 29-230 15-225 (507)
67 PRK14957 DNA polymerase III su 98.7 7.2E-07 1.6E-11 98.3 17.7 188 30-235 11-222 (546)
68 KOG0532 Leucine-rich repeat (L 98.7 1.3E-09 2.9E-14 113.9 -3.4 184 388-589 54-242 (722)
69 KOG3207 Beta-tubulin folding c 98.7 4.7E-09 1E-13 106.6 0.5 80 430-509 196-281 (505)
70 PRK05564 DNA polymerase III su 98.7 6.1E-07 1.3E-11 94.2 16.0 176 35-232 4-188 (313)
71 PRK07471 DNA polymerase III su 98.6 7E-07 1.5E-11 94.3 16.3 200 29-234 13-238 (365)
72 PF13173 AAA_14: AAA domain 98.6 9.7E-08 2.1E-12 85.5 7.9 119 57-195 3-126 (128)
73 cd00009 AAA The AAA+ (ATPases 98.6 2.6E-07 5.7E-12 85.7 11.2 123 38-174 1-131 (151)
74 KOG2227 Pre-initiation complex 98.6 7.1E-06 1.5E-10 85.0 22.1 207 33-239 148-373 (529)
75 PRK05896 DNA polymerase III su 98.6 7.3E-07 1.6E-11 98.2 15.5 185 29-235 10-222 (605)
76 PRK07994 DNA polymerase III su 98.6 8.6E-07 1.9E-11 99.2 16.1 182 30-233 11-219 (647)
77 PF13191 AAA_16: AAA ATPase do 98.6 1.2E-07 2.7E-12 91.6 8.5 48 36-83 1-51 (185)
78 PRK14964 DNA polymerase III su 98.6 1.4E-06 2.9E-11 94.7 17.1 183 30-230 8-213 (491)
79 COG4886 Leucine-rich repeat (L 98.6 4.4E-08 9.6E-13 107.3 5.8 157 404-576 114-272 (394)
80 COG4886 Leucine-rich repeat (L 98.6 3.9E-08 8.5E-13 107.7 5.3 177 384-577 116-295 (394)
81 TIGR02397 dnaX_nterm DNA polym 98.6 1.7E-06 3.8E-11 93.2 17.8 187 30-235 9-219 (355)
82 KOG0989 Replication factor C, 98.6 2.6E-07 5.7E-12 90.1 9.9 192 24-228 25-224 (346)
83 PRK13341 recombination factor 98.6 6.7E-07 1.5E-11 102.3 15.0 175 29-229 22-212 (725)
84 PRK08691 DNA polymerase III su 98.6 8.4E-07 1.8E-11 98.7 15.1 180 30-231 11-217 (709)
85 PF14516 AAA_35: AAA-like doma 98.6 2.6E-05 5.7E-10 82.1 25.6 204 30-241 6-246 (331)
86 PRK08084 DNA replication initi 98.6 1.4E-06 3.1E-11 86.9 15.2 178 30-235 17-210 (235)
87 PRK14958 DNA polymerase III su 98.6 8.7E-07 1.9E-11 97.9 14.8 184 30-231 11-217 (509)
88 PTZ00202 tuzin; Provisional 98.6 6.8E-07 1.5E-11 92.5 12.6 166 29-204 256-434 (550)
89 PRK14951 DNA polymerase III su 98.6 1.4E-06 3.1E-11 97.4 16.2 180 30-231 11-222 (618)
90 PRK08727 hypothetical protein; 98.5 1.7E-06 3.7E-11 86.1 15.1 178 26-231 10-201 (233)
91 KOG2028 ATPase related to the 98.5 1.9E-06 4.1E-11 85.7 14.6 178 30-229 133-331 (554)
92 PRK07940 DNA polymerase III su 98.5 2.3E-06 5.1E-11 91.1 16.6 174 34-233 4-212 (394)
93 PRK14955 DNA polymerase III su 98.5 1.3E-06 2.7E-11 94.6 14.9 202 30-232 11-226 (397)
94 PRK09087 hypothetical protein; 98.5 9.7E-07 2.1E-11 87.0 12.3 173 26-235 12-196 (226)
95 PRK14959 DNA polymerase III su 98.5 2E-06 4.3E-11 95.4 15.8 187 30-238 11-225 (624)
96 PRK08903 DnaA regulatory inact 98.5 1E-06 2.2E-11 88.1 12.4 180 27-238 10-203 (227)
97 PRK14969 DNA polymerase III su 98.5 3.5E-06 7.7E-11 93.8 17.9 182 31-234 12-221 (527)
98 TIGR00678 holB DNA polymerase 98.5 2.5E-06 5.4E-11 82.3 14.7 158 46-230 3-187 (188)
99 TIGR01242 26Sp45 26S proteasom 98.5 1.5E-06 3.3E-11 93.3 13.2 177 30-228 117-328 (364)
100 KOG1909 Ran GTPase-activating 98.5 3.2E-08 6.9E-13 97.9 0.2 41 620-661 237-281 (382)
101 PRK09111 DNA polymerase III su 98.5 3.7E-06 8E-11 94.4 16.4 199 30-233 19-232 (598)
102 TIGR02903 spore_lon_C ATP-depe 98.5 3.9E-06 8.5E-11 95.4 16.8 207 29-237 148-398 (615)
103 KOG2120 SCF ubiquitin ligase, 98.5 5E-09 1.1E-13 100.9 -5.5 85 477-571 186-272 (419)
104 cd01128 rho_factor Transcripti 98.4 6.5E-07 1.4E-11 88.9 9.0 92 55-147 15-115 (249)
105 PRK14970 DNA polymerase III su 98.4 5.2E-06 1.1E-10 89.5 16.8 184 29-230 11-205 (367)
106 PRK09376 rho transcription ter 98.4 7.8E-07 1.7E-11 91.8 9.7 101 46-147 158-268 (416)
107 PRK07764 DNA polymerase III su 98.4 4.6E-06 9.9E-11 96.9 16.7 179 30-230 10-217 (824)
108 PRK03992 proteasome-activating 98.4 3E-06 6.5E-11 91.2 13.9 175 32-228 128-337 (389)
109 PRK08451 DNA polymerase III su 98.4 8.4E-06 1.8E-10 89.5 17.2 183 30-234 9-218 (535)
110 PRK06305 DNA polymerase III su 98.4 7.8E-06 1.7E-10 89.4 16.8 186 30-234 12-223 (451)
111 PRK07133 DNA polymerase III su 98.4 6.3E-06 1.4E-10 93.0 16.2 184 29-234 12-220 (725)
112 PRK14954 DNA polymerase III su 98.4 8.2E-06 1.8E-10 91.7 17.1 195 30-229 11-223 (620)
113 PRK05642 DNA replication initi 98.4 8.3E-06 1.8E-10 81.3 15.0 185 26-238 10-212 (234)
114 TIGR03345 VI_ClpV1 type VI sec 98.4 5.6E-06 1.2E-10 97.5 15.8 182 31-227 183-389 (852)
115 PRK14952 DNA polymerase III su 98.4 1.3E-05 2.7E-10 89.6 17.6 185 30-236 8-222 (584)
116 TIGR02639 ClpA ATP-dependent C 98.4 4.7E-06 1E-10 97.5 14.9 159 31-204 178-358 (731)
117 KOG2120 SCF ubiquitin ligase, 98.4 1.7E-08 3.7E-13 97.2 -4.5 120 619-743 255-374 (419)
118 PHA02544 44 clamp loader, smal 98.3 6.6E-06 1.4E-10 87.0 14.1 157 25-203 11-172 (316)
119 KOG1909 Ran GTPase-activating 98.3 1E-07 2.3E-12 94.4 0.4 189 451-661 89-309 (382)
120 PRK14953 DNA polymerase III su 98.3 1.6E-05 3.5E-10 87.4 17.4 183 30-234 11-220 (486)
121 PLN03150 hypothetical protein; 98.3 1E-06 2.2E-11 101.0 8.4 102 433-535 420-526 (623)
122 PF13855 LRR_8: Leucine rich r 98.3 7.3E-07 1.6E-11 67.8 4.7 56 432-487 2-60 (61)
123 PRK14971 DNA polymerase III su 98.3 1.5E-05 3.3E-10 90.2 17.3 182 30-230 12-218 (614)
124 PRK14950 DNA polymerase III su 98.3 1.5E-05 3.2E-10 90.7 17.2 198 30-234 11-221 (585)
125 KOG0991 Replication factor C, 98.3 4.4E-06 9.5E-11 78.0 10.3 109 25-147 17-125 (333)
126 KOG2543 Origin recognition com 98.3 2.3E-05 5E-10 79.1 15.8 164 35-204 6-193 (438)
127 PLN03150 hypothetical protein; 98.3 1.7E-06 3.8E-11 99.2 9.1 108 407-515 419-531 (623)
128 PF00308 Bac_DnaA: Bacterial d 98.3 1.4E-05 2.9E-10 78.7 14.0 163 56-235 34-209 (219)
129 PRK07399 DNA polymerase III su 98.3 2.6E-05 5.7E-10 80.8 16.4 196 34-234 3-221 (314)
130 PF13855 LRR_8: Leucine rich r 98.3 1E-06 2.2E-11 66.9 4.4 60 406-466 1-61 (61)
131 PRK14087 dnaA chromosomal repl 98.3 1.4E-05 3E-10 87.4 14.6 167 57-237 142-322 (450)
132 PF05621 TniB: Bacterial TniB 98.2 2.5E-05 5.3E-10 78.1 14.7 191 42-232 44-259 (302)
133 CHL00095 clpC Clp protease ATP 98.2 1E-05 2.2E-10 96.0 14.2 157 35-204 179-354 (821)
134 PRK06647 DNA polymerase III su 98.2 3.5E-05 7.5E-10 86.3 17.6 194 30-231 11-217 (563)
135 PRK14948 DNA polymerase III su 98.2 3.1E-05 6.8E-10 87.7 17.1 199 30-234 11-222 (620)
136 TIGR03689 pup_AAA proteasome A 98.2 2.2E-05 4.7E-10 85.8 14.7 163 31-206 178-380 (512)
137 TIGR00767 rho transcription te 98.2 6.2E-06 1.3E-10 85.8 10.0 91 56-147 168-267 (415)
138 TIGR02881 spore_V_K stage V sp 98.2 1.1E-05 2.4E-10 82.2 11.8 155 35-205 6-192 (261)
139 PTZ00454 26S protease regulato 98.2 2.6E-05 5.5E-10 83.5 14.3 179 29-229 139-352 (398)
140 PRK14965 DNA polymerase III su 98.2 2.3E-05 5.1E-10 88.5 14.6 183 30-234 11-221 (576)
141 PF05673 DUF815: Protein of un 98.1 0.00011 2.3E-09 71.2 16.1 128 24-177 16-155 (249)
142 PRK05563 DNA polymerase III su 98.1 5.8E-05 1.3E-09 84.9 16.6 178 30-230 11-216 (559)
143 TIGR03346 chaperone_ClpB ATP-d 98.1 4.3E-05 9.4E-10 90.9 16.4 157 33-204 171-349 (852)
144 TIGR02880 cbbX_cfxQ probable R 98.1 8.9E-05 1.9E-09 76.1 15.7 132 58-205 60-209 (284)
145 CHL00181 cbbX CbbX; Provisiona 98.1 9.7E-05 2.1E-09 75.7 15.7 132 58-205 61-210 (287)
146 TIGR00602 rad24 checkpoint pro 98.1 1.5E-05 3.3E-10 89.4 10.5 57 25-81 74-135 (637)
147 PRK11034 clpA ATP-dependent Cl 98.1 2.4E-05 5.1E-10 90.4 11.9 157 35-204 186-362 (758)
148 PF12799 LRR_4: Leucine Rich r 98.1 4.1E-06 8.9E-11 58.0 3.5 41 431-471 1-41 (44)
149 PTZ00361 26 proteosome regulat 98.1 3.4E-05 7.5E-10 83.1 12.1 177 30-228 178-389 (438)
150 PRK10865 protein disaggregatio 98.0 6.9E-05 1.5E-09 88.8 15.6 158 32-204 175-354 (857)
151 KOG0531 Protein phosphatase 1, 98.0 6.8E-07 1.5E-11 97.9 -1.0 106 428-536 92-198 (414)
152 COG1222 RPT1 ATP-dependent 26S 98.0 0.00017 3.8E-09 72.5 15.8 203 29-253 145-392 (406)
153 KOG1859 Leucine-rich repeat pr 98.0 8.2E-08 1.8E-12 103.4 -8.3 127 432-572 165-292 (1096)
154 PRK00149 dnaA chromosomal repl 98.0 0.00019 4E-09 79.5 17.4 180 57-253 149-349 (450)
155 COG3267 ExeA Type II secretory 98.0 0.00043 9.3E-09 66.7 17.2 181 53-237 48-248 (269)
156 TIGR01241 FtsH_fam ATP-depende 98.0 7.4E-05 1.6E-09 83.7 14.1 178 29-228 49-260 (495)
157 KOG0531 Protein phosphatase 1, 98.0 8.1E-07 1.8E-11 97.4 -1.7 132 429-577 70-204 (414)
158 KOG2982 Uncharacterized conser 98.0 8.7E-07 1.9E-11 85.7 -1.4 72 619-695 194-265 (418)
159 PRK05707 DNA polymerase III su 97.9 0.00013 2.7E-09 76.3 13.5 156 56-234 22-203 (328)
160 PRK11331 5-methylcytosine-spec 97.9 2.4E-05 5.1E-10 83.1 8.0 108 35-147 175-284 (459)
161 TIGR00362 DnaA chromosomal rep 97.9 0.00015 3.3E-09 79.2 14.5 159 57-232 137-308 (405)
162 PRK14088 dnaA chromosomal repl 97.9 0.00043 9.3E-09 75.8 17.9 204 34-253 104-332 (440)
163 PRK06620 hypothetical protein; 97.9 0.0001 2.2E-09 72.1 11.6 136 57-232 45-187 (214)
164 KOG3665 ZYG-1-like serine/thre 97.9 3.3E-06 7.2E-11 96.4 1.0 125 384-509 122-260 (699)
165 CHL00176 ftsH cell division pr 97.9 0.0003 6.6E-09 79.9 16.5 174 32-227 180-387 (638)
166 COG2255 RuvB Holliday junction 97.9 0.00075 1.6E-08 65.8 16.5 180 30-238 21-227 (332)
167 COG1373 Predicted ATPase (AAA+ 97.9 0.00017 3.6E-09 77.7 13.3 139 38-200 20-163 (398)
168 PRK08769 DNA polymerase III su 97.9 0.00049 1.1E-08 71.1 15.9 174 42-234 11-208 (319)
169 PF00004 AAA: ATPase family as 97.8 4.6E-05 1E-09 68.8 7.4 69 59-147 1-70 (132)
170 PF12799 LRR_4: Leucine Rich r 97.8 2.4E-05 5.2E-10 54.2 4.0 38 477-515 2-39 (44)
171 COG2812 DnaX DNA polymerase II 97.8 7.7E-05 1.7E-09 80.9 9.6 195 30-228 11-214 (515)
172 KOG3665 ZYG-1-like serine/thre 97.8 9.6E-06 2.1E-10 92.7 2.7 133 405-537 121-263 (699)
173 COG5238 RNA1 Ran GTPase-activa 97.8 2.7E-05 5.9E-10 74.7 4.9 238 430-688 29-312 (388)
174 PRK08058 DNA polymerase III su 97.7 0.00054 1.2E-08 72.1 14.7 147 36-203 6-181 (329)
175 smart00382 AAA ATPases associa 97.7 9.4E-05 2E-09 67.8 8.0 89 57-148 3-91 (148)
176 PRK06871 DNA polymerase III su 97.7 0.00084 1.8E-08 69.5 15.5 175 43-231 10-200 (325)
177 PF13177 DNA_pol3_delta2: DNA 97.7 0.00023 5.1E-09 66.3 9.8 136 39-192 1-162 (162)
178 PRK15386 type III secretion pr 97.7 0.00013 2.7E-09 76.7 8.6 130 429-589 50-185 (426)
179 PRK14086 dnaA chromosomal repl 97.7 0.00077 1.7E-08 74.9 15.1 158 57-231 315-485 (617)
180 PRK10536 hypothetical protein; 97.7 0.00038 8.3E-09 68.3 11.3 58 32-91 52-109 (262)
181 CHL00195 ycf46 Ycf46; Provisio 97.7 0.00041 8.9E-09 76.1 12.6 177 33-229 226-430 (489)
182 COG1223 Predicted ATPase (AAA+ 97.7 0.00036 7.8E-09 66.7 10.3 172 35-228 121-319 (368)
183 PRK12422 chromosomal replicati 97.6 0.00086 1.9E-08 73.2 14.5 153 57-228 142-307 (445)
184 KOG0733 Nuclear AAA ATPase (VC 97.6 0.00062 1.3E-08 73.1 12.7 173 34-228 189-396 (802)
185 PRK06090 DNA polymerase III su 97.6 0.0032 7E-08 65.1 17.8 181 43-253 11-217 (319)
186 KOG1859 Leucine-rich repeat pr 97.6 2E-06 4.3E-11 93.2 -5.8 125 382-510 162-290 (1096)
187 COG0466 Lon ATP-dependent Lon 97.6 0.00043 9.3E-09 76.2 11.7 158 35-204 323-508 (782)
188 PRK15386 type III secretion pr 97.6 0.00017 3.7E-09 75.8 8.4 131 384-534 52-187 (426)
189 COG0593 DnaA ATPase involved i 97.6 0.0013 2.9E-08 69.3 14.7 132 56-204 113-257 (408)
190 PRK12608 transcription termina 97.6 0.00082 1.8E-08 69.9 13.0 103 43-146 119-231 (380)
191 TIGR01243 CDC48 AAA family ATP 97.6 0.00082 1.8E-08 79.3 14.8 174 33-228 451-657 (733)
192 TIGR02640 gas_vesic_GvpN gas v 97.6 0.0017 3.8E-08 66.0 14.7 56 42-104 9-64 (262)
193 KOG1644 U2-associated snRNP A' 97.6 0.00012 2.6E-09 67.4 5.4 100 406-508 42-149 (233)
194 TIGR01243 CDC48 AAA family ATP 97.5 0.00072 1.6E-08 79.8 13.2 177 32-230 175-383 (733)
195 KOG0730 AAA+-type ATPase [Post 97.5 0.0019 4.1E-08 70.5 14.7 183 25-229 424-638 (693)
196 PRK07993 DNA polymerase III su 97.5 0.003 6.5E-08 66.2 15.8 175 43-231 10-201 (334)
197 PF10443 RNA12: RNA12 protein; 97.5 0.0062 1.3E-07 64.1 17.6 203 40-252 1-298 (431)
198 KOG2004 Mitochondrial ATP-depe 97.5 0.0011 2.3E-08 72.8 12.2 158 35-204 411-596 (906)
199 KOG0731 AAA+-type ATPase conta 97.5 0.001 2.3E-08 74.8 12.5 177 34-231 310-521 (774)
200 PHA00729 NTP-binding motif con 97.5 0.0016 3.4E-08 63.1 12.2 37 45-81 6-42 (226)
201 PRK08116 hypothetical protein; 97.4 0.00041 8.9E-09 70.4 8.3 102 57-173 115-221 (268)
202 KOG2982 Uncharacterized conser 97.4 9E-05 2E-09 72.2 3.2 85 426-510 66-157 (418)
203 KOG0739 AAA+-type ATPase [Post 97.4 0.0031 6.8E-08 61.7 13.5 171 35-228 133-335 (439)
204 TIGR02902 spore_lonB ATP-depen 97.4 0.00061 1.3E-08 76.5 10.2 53 29-81 59-111 (531)
205 COG0542 clpA ATP-binding subun 97.4 0.00039 8.5E-09 78.7 8.5 159 34-204 169-346 (786)
206 COG0470 HolB ATPase involved i 97.4 0.001 2.2E-08 70.7 11.6 142 36-193 2-170 (325)
207 KOG1947 Leucine rich repeat pr 97.4 7.3E-05 1.6E-09 84.6 2.9 66 710-786 380-445 (482)
208 PRK10787 DNA-binding ATP-depen 97.4 0.0011 2.4E-08 77.5 12.3 158 35-204 322-506 (784)
209 PLN00020 ribulose bisphosphate 97.4 0.0036 7.9E-08 64.4 14.3 149 56-229 148-333 (413)
210 KOG0733 Nuclear AAA ATPase (VC 97.4 0.00098 2.1E-08 71.6 10.6 130 56-205 545-693 (802)
211 TIGR02639 ClpA ATP-dependent C 97.4 0.0045 9.7E-08 72.9 17.3 103 35-147 454-565 (731)
212 KOG1969 DNA replication checkp 97.4 0.00067 1.5E-08 74.5 9.1 105 25-147 261-399 (877)
213 PF04665 Pox_A32: Poxvirus A32 97.4 0.00045 9.8E-09 67.6 7.1 35 58-94 15-49 (241)
214 PRK06964 DNA polymerase III su 97.3 0.0079 1.7E-07 62.9 16.5 105 121-234 114-225 (342)
215 KOG4579 Leucine-rich repeat (L 97.3 1.5E-05 3.3E-10 68.3 -2.9 107 387-494 30-141 (177)
216 PRK08118 topology modulation p 97.3 0.00011 2.4E-09 68.9 2.5 35 57-91 2-37 (167)
217 TIGR00763 lon ATP-dependent pr 97.3 0.0027 5.8E-08 75.2 14.2 158 35-204 320-505 (775)
218 PRK08181 transposase; Validate 97.3 0.00065 1.4E-08 68.5 7.6 105 49-173 101-209 (269)
219 TIGR03345 VI_ClpV1 type VI sec 97.3 0.0019 4.2E-08 76.5 12.5 47 35-81 566-621 (852)
220 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0029 6.3E-08 75.6 14.1 60 35-96 565-633 (852)
221 KOG1644 U2-associated snRNP A' 97.2 0.00052 1.1E-08 63.4 5.6 103 384-487 42-151 (233)
222 KOG2123 Uncharacterized conser 97.2 2.1E-05 4.5E-10 75.7 -3.6 105 453-565 18-123 (388)
223 PRK04132 replication factor C 97.2 0.0054 1.2E-07 71.3 15.0 155 61-231 569-728 (846)
224 KOG0741 AAA+-type ATPase [Post 97.2 0.0063 1.4E-07 64.5 13.8 148 55-224 537-704 (744)
225 PRK07261 topology modulation p 97.2 0.00097 2.1E-08 62.9 7.1 34 58-91 2-36 (171)
226 PF02562 PhoH: PhoH-like prote 97.2 0.0007 1.5E-08 64.7 6.1 52 40-93 5-56 (205)
227 KOG2228 Origin recognition com 97.2 0.011 2.4E-07 59.3 14.1 170 33-204 22-219 (408)
228 PF03215 Rad17: Rad17 cell cyc 97.1 0.0023 4.9E-08 70.9 10.5 67 25-95 9-80 (519)
229 COG2607 Predicted ATPase (AAA+ 97.1 0.0034 7.4E-08 59.7 9.8 123 25-173 50-183 (287)
230 KOG0734 AAA+-type ATPase conta 97.1 0.0029 6.3E-08 67.0 10.2 93 34-146 303-407 (752)
231 KOG2035 Replication factor C, 97.1 0.018 3.9E-07 56.2 14.6 213 29-255 7-260 (351)
232 PRK10865 protein disaggregatio 97.1 0.0044 9.5E-08 73.8 13.1 60 35-96 568-636 (857)
233 PRK06526 transposase; Provisio 97.1 0.00089 1.9E-08 67.2 6.0 73 56-146 98-170 (254)
234 PRK09183 transposase/IS protei 97.1 0.0017 3.6E-08 65.7 7.9 26 57-82 103-128 (259)
235 KOG0735 AAA+-type ATPase [Post 97.1 0.0053 1.2E-07 67.4 11.8 159 57-234 432-616 (952)
236 smart00763 AAA_PrkA PrkA AAA d 97.1 0.0011 2.4E-08 68.6 6.5 47 36-82 52-104 (361)
237 PRK12377 putative replication 97.0 0.0048 1E-07 61.4 10.8 73 56-145 101-173 (248)
238 KOG1514 Origin recognition com 97.0 0.027 5.8E-07 62.3 17.0 170 33-205 394-590 (767)
239 PRK10733 hflB ATP-dependent me 97.0 0.0058 1.3E-07 70.5 12.8 174 32-227 149-356 (644)
240 PRK11034 clpA ATP-dependent Cl 97.0 0.0044 9.5E-08 72.0 11.7 46 35-80 458-512 (758)
241 PF00448 SRP54: SRP54-type pro 97.0 0.0045 9.7E-08 59.6 9.9 86 57-144 2-92 (196)
242 PF01695 IstB_IS21: IstB-like 97.0 0.0017 3.7E-08 61.5 6.8 74 56-147 47-120 (178)
243 TIGR02237 recomb_radB DNA repa 97.0 0.0031 6.7E-08 62.0 8.9 47 56-105 12-58 (209)
244 PRK08699 DNA polymerase III su 97.0 0.0088 1.9E-07 62.5 12.4 153 57-230 22-202 (325)
245 KOG1947 Leucine rich repeat pr 97.0 0.00028 6E-09 79.9 1.4 172 600-785 187-368 (482)
246 PRK06921 hypothetical protein; 96.9 0.0025 5.5E-08 64.6 7.9 72 55-145 116-187 (266)
247 PRK08939 primosomal protein Dn 96.9 0.0039 8.4E-08 64.5 9.4 116 39-172 135-260 (306)
248 KOG2739 Leucine-rich acidic nu 96.9 0.0005 1.1E-08 66.5 2.6 114 452-575 41-159 (260)
249 KOG4579 Leucine-rich repeat (L 96.9 0.00014 2.9E-09 62.6 -1.1 89 428-517 50-140 (177)
250 PF13207 AAA_17: AAA domain; P 96.9 0.0008 1.7E-08 59.6 3.7 24 58-81 1-24 (121)
251 PF07693 KAP_NTPase: KAP famil 96.9 0.053 1.1E-06 57.6 18.1 44 40-83 1-47 (325)
252 KOG0743 AAA+-type ATPase [Post 96.9 0.037 7.9E-07 58.3 15.5 153 57-241 236-417 (457)
253 KOG0736 Peroxisome assembly fa 96.9 0.02 4.4E-07 63.8 14.2 169 35-225 672-876 (953)
254 PRK07952 DNA replication prote 96.8 0.0091 2E-07 59.4 10.7 89 43-147 84-174 (244)
255 COG0464 SpoVK ATPases of the A 96.8 0.0091 2E-07 67.3 12.0 173 34-226 241-445 (494)
256 PRK07132 DNA polymerase III su 96.8 0.039 8.4E-07 56.7 15.3 162 44-233 5-184 (299)
257 KOG0744 AAA+-type ATPase [Post 96.8 0.0077 1.7E-07 59.9 9.4 28 56-83 177-204 (423)
258 PRK14722 flhF flagellar biosyn 96.8 0.0068 1.5E-07 63.9 9.8 88 56-145 137-225 (374)
259 COG1484 DnaC DNA replication p 96.8 0.0085 1.9E-07 60.2 10.1 75 55-146 104-178 (254)
260 PRK06696 uridine kinase; Valid 96.8 0.0022 4.7E-08 63.7 5.8 44 39-82 2-48 (223)
261 KOG0728 26S proteasome regulat 96.8 0.037 7.9E-07 52.9 13.4 169 37-227 149-352 (404)
262 CHL00095 clpC Clp protease ATP 96.8 0.0047 1E-07 73.6 9.6 106 35-147 509-623 (821)
263 TIGR02012 tigrfam_recA protein 96.8 0.0057 1.2E-07 63.0 8.9 84 56-146 55-144 (321)
264 cd01123 Rad51_DMC1_radA Rad51_ 96.7 0.0041 8.9E-08 62.5 7.7 48 56-103 19-70 (235)
265 COG1875 NYN ribonuclease and A 96.7 0.0065 1.4E-07 61.6 8.6 138 36-174 225-389 (436)
266 KOG2739 Leucine-rich acidic nu 96.7 0.00073 1.6E-08 65.3 1.9 60 429-488 63-128 (260)
267 TIGR03499 FlhF flagellar biosy 96.7 0.0091 2E-07 61.3 9.9 87 56-144 194-281 (282)
268 cd01133 F1-ATPase_beta F1 ATP 96.7 0.011 2.5E-07 59.1 10.1 89 56-146 69-174 (274)
269 PRK04296 thymidine kinase; Pro 96.7 0.0024 5.2E-08 61.4 5.2 110 57-174 3-117 (190)
270 COG2884 FtsE Predicted ATPase 96.6 0.0058 1.3E-07 56.1 7.0 27 56-82 28-54 (223)
271 cd00983 recA RecA is a bacter 96.6 0.0073 1.6E-07 62.3 8.6 83 56-145 55-143 (325)
272 PRK06835 DNA replication prote 96.6 0.0089 1.9E-07 62.4 9.3 36 57-94 184-219 (329)
273 cd01120 RecA-like_NTPases RecA 96.6 0.011 2.4E-07 55.4 9.3 39 58-98 1-39 (165)
274 PRK09354 recA recombinase A; P 96.6 0.0087 1.9E-07 62.3 9.0 84 56-146 60-149 (349)
275 PRK12727 flagellar biosynthesi 96.6 0.014 3.1E-07 63.5 10.9 88 56-145 350-438 (559)
276 PRK05541 adenylylsulfate kinas 96.6 0.0061 1.3E-07 58.0 7.2 35 56-92 7-41 (176)
277 COG1618 Predicted nucleotide k 96.6 0.0034 7.4E-08 55.9 4.7 30 58-88 7-36 (179)
278 cd01393 recA_like RecA is a b 96.5 0.015 3.2E-07 58.0 10.1 49 56-104 19-71 (226)
279 KOG2123 Uncharacterized conser 96.5 0.00014 3E-09 70.3 -4.3 98 432-530 20-123 (388)
280 PRK09270 nucleoside triphospha 96.5 0.016 3.4E-07 57.8 10.0 30 54-83 31-60 (229)
281 PRK11889 flhF flagellar biosyn 96.5 0.028 6E-07 58.9 11.8 39 55-95 240-278 (436)
282 COG0542 clpA ATP-binding subun 96.5 0.0062 1.3E-07 69.4 7.6 130 35-172 491-643 (786)
283 TIGR02858 spore_III_AA stage I 96.4 0.022 4.7E-07 57.6 10.2 126 45-176 99-232 (270)
284 PRK13531 regulatory ATPase Rav 96.4 0.0045 9.7E-08 66.8 5.5 50 35-86 20-69 (498)
285 PRK09361 radB DNA repair and r 96.4 0.015 3.3E-07 57.9 9.0 45 56-103 23-67 (225)
286 KOG0651 26S proteasome regulat 96.4 0.011 2.3E-07 58.6 7.4 101 56-176 166-284 (388)
287 PRK15455 PrkA family serine pr 96.4 0.005 1.1E-07 67.3 5.6 49 34-82 75-129 (644)
288 KOG0652 26S proteasome regulat 96.4 0.089 1.9E-06 50.7 13.2 57 25-81 161-230 (424)
289 PHA02244 ATPase-like protein 96.4 0.02 4.4E-07 59.6 9.8 45 35-81 96-144 (383)
290 PF00006 ATP-synt_ab: ATP synt 96.3 0.015 3.2E-07 56.6 8.3 86 57-146 16-116 (215)
291 PF08423 Rad51: Rad51; InterP 96.3 0.019 4.2E-07 57.9 9.5 54 57-111 39-96 (256)
292 COG4088 Predicted nucleotide k 96.3 0.0059 1.3E-07 56.6 5.1 27 57-83 2-28 (261)
293 PF10236 DAP3: Mitochondrial r 96.3 0.22 4.8E-06 51.9 17.5 47 185-231 258-306 (309)
294 TIGR02238 recomb_DMC1 meiotic 96.3 0.014 3E-07 60.7 8.4 57 56-113 96-156 (313)
295 PF14532 Sigma54_activ_2: Sigm 96.3 0.0014 3E-08 59.5 0.9 44 38-81 1-46 (138)
296 cd02025 PanK Pantothenate kina 96.3 0.019 4E-07 56.6 8.8 25 58-82 1-25 (220)
297 PRK12723 flagellar biosynthesi 96.3 0.03 6.5E-07 59.7 10.8 88 56-145 174-264 (388)
298 PF03308 ArgK: ArgK protein; 96.3 0.01 2.3E-07 58.0 6.6 59 43-101 14-74 (266)
299 PRK06547 hypothetical protein; 96.3 0.0066 1.4E-07 57.0 5.2 36 46-81 5-40 (172)
300 PRK08533 flagellar accessory p 96.3 0.027 5.9E-07 55.9 9.9 48 56-107 24-71 (230)
301 COG0465 HflB ATP-dependent Zn 96.2 0.032 7E-07 61.9 11.1 178 31-230 146-357 (596)
302 TIGR03877 thermo_KaiC_1 KaiC d 96.2 0.031 6.7E-07 56.0 10.3 47 56-106 21-67 (237)
303 TIGR00554 panK_bact pantothena 96.2 0.023 5.1E-07 57.9 9.4 28 54-81 60-87 (290)
304 cd01394 radB RadB. The archaea 96.2 0.019 4.2E-07 56.8 8.7 41 56-98 19-59 (218)
305 PRK15429 formate hydrogenlyase 96.2 0.082 1.8E-06 62.1 14.9 63 32-96 373-437 (686)
306 PRK07667 uridine kinase; Provi 96.2 0.0082 1.8E-07 57.9 5.5 38 45-82 4-43 (193)
307 PRK12726 flagellar biosynthesi 96.2 0.037 8E-07 57.9 10.3 89 55-145 205-295 (407)
308 TIGR01359 UMP_CMP_kin_fam UMP- 96.1 0.017 3.8E-07 55.3 7.7 24 58-81 1-24 (183)
309 CHL00206 ycf2 Ycf2; Provisiona 96.1 0.049 1.1E-06 67.5 12.8 27 55-81 1629-1655(2281)
310 cd01125 repA Hexameric Replica 96.1 0.029 6.3E-07 56.4 9.3 25 58-82 3-27 (239)
311 cd03115 SRP The signal recogni 96.1 0.026 5.7E-07 53.4 8.5 26 58-83 2-27 (173)
312 COG1419 FlhF Flagellar GTP-bin 96.1 0.065 1.4E-06 56.2 11.7 101 43-145 186-291 (407)
313 PF13238 AAA_18: AAA domain; P 96.1 0.0053 1.2E-07 54.9 3.5 22 59-80 1-22 (129)
314 PF01583 APS_kinase: Adenylyls 96.1 0.013 2.8E-07 53.3 5.9 35 57-93 3-37 (156)
315 PRK13765 ATP-dependent proteas 96.1 0.01 2.2E-07 67.4 6.4 81 30-114 26-106 (637)
316 PF07728 AAA_5: AAA domain (dy 96.1 0.014 2.9E-07 53.1 6.2 42 59-105 2-43 (139)
317 PRK12724 flagellar biosynthesi 96.0 0.03 6.5E-07 59.5 9.3 26 56-81 223-248 (432)
318 KOG0738 AAA+-type ATPase [Post 96.0 0.16 3.5E-06 52.3 13.9 55 35-96 212-278 (491)
319 PLN03187 meiotic recombination 96.0 0.028 6.2E-07 58.8 9.0 57 56-113 126-186 (344)
320 PTZ00301 uridine kinase; Provi 96.0 0.0064 1.4E-07 59.1 3.9 26 56-81 3-28 (210)
321 PF00485 PRK: Phosphoribulokin 96.0 0.0057 1.2E-07 59.2 3.6 26 58-83 1-26 (194)
322 KOG0737 AAA+-type ATPase [Post 96.0 0.063 1.4E-06 55.0 10.9 49 34-82 91-153 (386)
323 PRK05703 flhF flagellar biosyn 96.0 0.045 9.7E-07 59.6 10.8 87 56-144 221-308 (424)
324 PRK05439 pantothenate kinase; 96.0 0.047 1E-06 56.2 10.1 28 54-81 84-111 (311)
325 cd01121 Sms Sms (bacterial rad 96.0 0.027 5.8E-07 60.0 8.7 85 57-146 83-169 (372)
326 COG1703 ArgK Putative periplas 96.0 0.014 2.9E-07 58.0 5.9 61 44-104 37-99 (323)
327 cd02019 NK Nucleoside/nucleoti 96.0 0.0067 1.5E-07 47.1 3.1 23 58-80 1-23 (69)
328 COG1066 Sms Predicted ATP-depe 95.9 0.017 3.8E-07 59.8 6.8 96 45-146 80-179 (456)
329 KOG0735 AAA+-type ATPase [Post 95.9 0.083 1.8E-06 58.5 12.1 151 58-230 703-872 (952)
330 cd03214 ABC_Iron-Siderophores_ 95.9 0.029 6.2E-07 53.6 8.0 117 56-176 25-161 (180)
331 PRK10867 signal recognition pa 95.9 0.079 1.7E-06 57.4 12.1 28 56-83 100-127 (433)
332 PRK05917 DNA polymerase III su 95.9 0.14 3E-06 52.0 13.1 130 43-191 5-154 (290)
333 PRK04328 hypothetical protein; 95.9 0.037 8.1E-07 55.8 9.2 40 56-97 23-62 (249)
334 PF13481 AAA_25: AAA domain; P 95.9 0.051 1.1E-06 52.6 9.9 41 57-97 33-81 (193)
335 cd03228 ABCC_MRP_Like The MRP 95.9 0.025 5.4E-07 53.5 7.4 26 56-81 28-53 (171)
336 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.035 7.5E-07 50.7 8.1 24 57-80 27-50 (144)
337 PRK14974 cell division protein 95.9 0.082 1.8E-06 55.3 11.7 89 56-146 140-233 (336)
338 COG0572 Udk Uridine kinase [Nu 95.9 0.0078 1.7E-07 57.5 3.8 29 54-82 6-34 (218)
339 TIGR00959 ffh signal recogniti 95.9 0.09 1.9E-06 56.9 12.3 26 56-81 99-124 (428)
340 PTZ00494 tuzin-like protein; P 95.9 0.53 1.2E-05 49.7 16.9 166 30-204 366-544 (664)
341 PRK00771 signal recognition pa 95.8 0.056 1.2E-06 58.6 10.6 57 55-113 94-151 (437)
342 KOG3864 Uncharacterized conser 95.8 0.0018 3.9E-08 60.0 -0.6 71 674-746 120-190 (221)
343 TIGR00064 ftsY signal recognit 95.8 0.061 1.3E-06 54.8 10.3 39 55-95 71-109 (272)
344 KOG0729 26S proteasome regulat 95.8 0.04 8.6E-07 53.2 8.2 98 29-146 171-281 (435)
345 COG0468 RecA RecA/RadA recombi 95.8 0.056 1.2E-06 54.5 9.8 87 56-145 60-151 (279)
346 cd01124 KaiC KaiC is a circadi 95.8 0.033 7.1E-07 53.6 8.0 44 59-106 2-45 (187)
347 cd03247 ABCC_cytochrome_bd The 95.8 0.02 4.2E-07 54.6 6.2 24 57-80 29-52 (178)
348 PRK08233 hypothetical protein; 95.8 0.0077 1.7E-07 57.7 3.5 26 56-81 3-28 (182)
349 TIGR02974 phageshock_pspF psp 95.8 0.022 4.9E-07 59.8 7.1 44 37-80 1-46 (329)
350 PTZ00035 Rad51 protein; Provis 95.8 0.044 9.5E-07 57.7 9.2 56 56-112 118-177 (337)
351 cd01135 V_A-ATPase_B V/A-type 95.8 0.062 1.3E-06 53.8 9.6 92 56-147 69-178 (276)
352 TIGR01817 nifA Nif-specific re 95.7 0.052 1.1E-06 61.8 10.5 50 32-81 193-244 (534)
353 cd03223 ABCD_peroxisomal_ALDP 95.7 0.036 7.9E-07 52.0 7.7 25 57-81 28-52 (166)
354 TIGR00235 udk uridine kinase. 95.7 0.01 2.2E-07 58.1 4.1 28 54-81 4-31 (207)
355 PRK05480 uridine/cytidine kina 95.7 0.01 2.2E-07 58.3 4.1 27 54-80 4-30 (209)
356 PF00910 RNA_helicase: RNA hel 95.7 0.011 2.4E-07 50.7 3.8 25 59-83 1-25 (107)
357 TIGR01650 PD_CobS cobaltochela 95.7 0.035 7.5E-07 57.1 8.0 68 29-103 39-106 (327)
358 PRK12597 F0F1 ATP synthase sub 95.7 0.05 1.1E-06 59.0 9.6 91 55-146 142-248 (461)
359 TIGR02239 recomb_RAD51 DNA rep 95.7 0.04 8.6E-07 57.5 8.4 55 56-111 96-154 (316)
360 COG4608 AppF ABC-type oligopep 95.7 0.038 8.2E-07 54.5 7.7 119 56-178 39-175 (268)
361 PF13671 AAA_33: AAA domain; P 95.7 0.0099 2.1E-07 54.3 3.6 24 58-81 1-24 (143)
362 KOG0727 26S proteasome regulat 95.7 0.063 1.4E-06 51.5 8.8 151 34-204 154-339 (408)
363 PF13245 AAA_19: Part of AAA d 95.7 0.03 6.4E-07 44.3 5.7 26 55-80 9-34 (76)
364 COG1428 Deoxynucleoside kinase 95.6 0.018 3.8E-07 54.3 5.0 49 56-109 4-52 (216)
365 PLN03186 DNA repair protein RA 95.6 0.037 8.1E-07 58.0 8.0 57 56-113 123-183 (342)
366 KOG0740 AAA+-type ATPase [Post 95.6 0.23 5E-06 52.9 13.7 72 55-146 185-256 (428)
367 PRK04301 radA DNA repair and r 95.6 0.043 9.3E-07 57.7 8.5 56 56-112 102-161 (317)
368 cd01131 PilT Pilus retraction 95.6 0.017 3.8E-07 55.9 5.1 111 57-176 2-112 (198)
369 PF00154 RecA: recA bacterial 95.6 0.085 1.8E-06 54.4 10.3 94 46-147 40-143 (322)
370 PRK06762 hypothetical protein; 95.6 0.012 2.5E-07 55.4 3.8 24 57-80 3-26 (166)
371 TIGR02236 recomb_radA DNA repa 95.6 0.05 1.1E-06 57.1 8.9 56 56-112 95-154 (310)
372 TIGR01360 aden_kin_iso1 adenyl 95.6 0.011 2.5E-07 56.9 3.7 26 55-80 2-27 (188)
373 cd00561 CobA_CobO_BtuR ATP:cor 95.6 0.069 1.5E-06 48.9 8.4 116 57-175 3-140 (159)
374 PRK12678 transcription termina 95.5 0.057 1.2E-06 59.1 9.1 100 46-146 405-514 (672)
375 PRK11608 pspF phage shock prot 95.5 0.02 4.4E-07 60.2 5.7 47 33-79 4-52 (326)
376 PRK08972 fliI flagellum-specif 95.5 0.037 8E-07 59.3 7.6 88 56-147 162-264 (444)
377 PRK06067 flagellar accessory p 95.5 0.087 1.9E-06 52.8 10.1 48 56-107 25-72 (234)
378 PF12775 AAA_7: P-loop contain 95.5 0.0055 1.2E-07 62.3 1.4 89 45-146 23-111 (272)
379 TIGR01425 SRP54_euk signal rec 95.5 0.12 2.6E-06 55.7 11.4 28 56-83 100-127 (429)
380 cd03216 ABC_Carb_Monos_I This 95.5 0.022 4.8E-07 53.2 5.4 112 57-176 27-145 (163)
381 TIGR03878 thermo_KaiC_2 KaiC d 95.5 0.09 1.9E-06 53.4 10.1 39 56-96 36-74 (259)
382 PF03205 MobB: Molybdopterin g 95.5 0.016 3.4E-07 52.4 4.1 39 57-96 1-39 (140)
383 PF00560 LRR_1: Leucine Rich R 95.5 0.0074 1.6E-07 34.5 1.3 22 432-453 1-22 (22)
384 PF07724 AAA_2: AAA domain (Cd 95.5 0.014 3E-07 54.7 4.0 43 56-99 3-45 (171)
385 cd03238 ABC_UvrA The excision 95.5 0.029 6.4E-07 52.8 6.1 22 57-78 22-43 (176)
386 cd00544 CobU Adenosylcobinamid 95.5 0.066 1.4E-06 50.1 8.4 81 59-145 2-83 (169)
387 PRK03839 putative kinase; Prov 95.5 0.012 2.7E-07 56.1 3.6 24 58-81 2-25 (180)
388 PF13306 LRR_5: Leucine rich r 95.5 0.045 9.7E-07 48.8 7.0 102 425-532 6-111 (129)
389 PRK10463 hydrogenase nickel in 95.4 0.025 5.3E-07 57.2 5.5 39 45-83 93-131 (290)
390 TIGR00150 HI0065_YjeE ATPase, 95.4 0.029 6.3E-07 49.6 5.2 41 42-82 6-48 (133)
391 KOG3347 Predicted nucleotide k 95.4 0.012 2.7E-07 51.5 2.8 34 57-97 8-41 (176)
392 PRK14721 flhF flagellar biosyn 95.4 0.12 2.5E-06 55.7 10.7 87 56-144 191-278 (420)
393 PF08433 KTI12: Chromatin asso 95.3 0.019 4E-07 58.2 4.4 26 57-82 2-27 (270)
394 PRK14723 flhF flagellar biosyn 95.3 0.14 3E-06 59.1 11.7 88 56-145 185-273 (767)
395 COG0529 CysC Adenylylsulfate k 95.3 0.034 7.4E-07 50.6 5.5 34 50-83 17-50 (197)
396 PF13306 LRR_5: Leucine rich r 95.3 0.05 1.1E-06 48.5 6.8 116 404-527 10-129 (129)
397 COG1102 Cmk Cytidylate kinase 95.3 0.015 3.2E-07 52.0 3.1 44 58-114 2-45 (179)
398 cd02027 APSK Adenosine 5'-phos 95.3 0.085 1.8E-06 48.4 8.3 25 58-82 1-25 (149)
399 PRK04040 adenylate kinase; Pro 95.3 0.017 3.6E-07 55.3 3.7 25 57-81 3-27 (188)
400 TIGR00764 lon_rel lon-related 95.3 0.034 7.4E-07 63.5 6.8 77 33-113 16-92 (608)
401 TIGR02655 circ_KaiC circadian 95.3 0.086 1.9E-06 58.9 9.9 97 44-145 249-363 (484)
402 PRK08927 fliI flagellum-specif 95.3 0.11 2.3E-06 56.1 10.0 88 55-146 157-259 (442)
403 PRK06995 flhF flagellar biosyn 95.3 0.099 2.2E-06 57.2 9.9 40 56-95 256-295 (484)
404 PF00560 LRR_1: Leucine Rich R 95.2 0.0068 1.5E-07 34.7 0.5 21 477-497 1-21 (22)
405 COG1121 ZnuC ABC-type Mn/Zn tr 95.2 0.084 1.8E-06 52.1 8.4 119 57-177 31-203 (254)
406 COG3640 CooC CO dehydrogenase 95.2 0.038 8.2E-07 52.9 5.8 42 58-100 2-43 (255)
407 PRK06002 fliI flagellum-specif 95.2 0.069 1.5E-06 57.6 8.5 87 57-146 166-265 (450)
408 cd03246 ABCC_Protease_Secretio 95.2 0.043 9.2E-07 52.0 6.3 24 57-80 29-52 (173)
409 PRK07276 DNA polymerase III su 95.2 0.53 1.2E-05 48.1 14.4 139 41-202 8-173 (290)
410 cd03222 ABC_RNaseL_inhibitor T 95.2 0.05 1.1E-06 51.4 6.6 24 57-80 26-49 (177)
411 PRK00625 shikimate kinase; Pro 95.2 0.016 3.6E-07 54.4 3.4 24 58-81 2-25 (173)
412 PRK10751 molybdopterin-guanine 95.2 0.022 4.8E-07 53.0 4.1 29 55-83 5-33 (173)
413 KOG1970 Checkpoint RAD17-RFC c 95.2 0.12 2.7E-06 55.6 10.1 52 37-92 84-142 (634)
414 PRK13949 shikimate kinase; Pro 95.2 0.03 6.4E-07 52.6 5.1 24 58-81 3-26 (169)
415 TIGR00390 hslU ATP-dependent p 95.2 0.046 9.9E-07 57.9 6.9 48 35-82 12-73 (441)
416 PF07726 AAA_3: ATPase family 95.2 0.012 2.6E-07 51.0 2.1 24 59-82 2-25 (131)
417 PRK11823 DNA repair protein Ra 95.2 0.048 1E-06 59.9 7.4 85 56-145 80-166 (446)
418 PRK15453 phosphoribulokinase; 95.2 0.13 2.8E-06 51.6 9.5 27 55-81 4-30 (290)
419 TIGR03305 alt_F1F0_F1_bet alte 95.1 0.07 1.5E-06 57.6 8.3 91 56-147 138-244 (449)
420 TIGR00708 cobA cob(I)alamin ad 95.1 0.21 4.6E-06 46.4 10.3 119 56-175 5-142 (173)
421 KOG0726 26S proteasome regulat 95.1 0.12 2.6E-06 50.8 9.0 97 29-146 179-289 (440)
422 PF06309 Torsin: Torsin; Inte 95.1 0.048 1E-06 47.2 5.7 47 35-81 25-78 (127)
423 PTZ00088 adenylate kinase 1; P 95.1 0.099 2.2E-06 51.6 8.7 23 59-81 9-31 (229)
424 PRK13407 bchI magnesium chelat 95.1 0.029 6.2E-07 58.6 5.1 50 31-80 4-53 (334)
425 PRK00131 aroK shikimate kinase 95.1 0.02 4.3E-07 54.4 3.7 26 56-81 4-29 (175)
426 PF08298 AAA_PrkA: PrkA AAA do 95.1 0.04 8.6E-07 56.8 5.9 47 35-81 61-113 (358)
427 PRK09280 F0F1 ATP synthase sub 95.1 0.13 2.9E-06 55.7 10.1 90 56-146 144-249 (463)
428 KOG1532 GTPase XAB1, interacts 95.1 0.027 5.8E-07 54.8 4.3 28 56-83 19-46 (366)
429 PRK05342 clpX ATP-dependent pr 95.1 0.036 7.9E-07 59.8 5.9 47 35-81 71-133 (412)
430 cd03230 ABC_DR_subfamily_A Thi 95.1 0.048 1E-06 51.6 6.2 24 57-80 27-50 (173)
431 cd03281 ABC_MSH5_euk MutS5 hom 95.0 0.041 8.9E-07 53.9 5.7 24 56-79 29-52 (213)
432 PF13086 AAA_11: AAA domain; P 95.0 0.05 1.1E-06 54.5 6.6 36 43-80 6-41 (236)
433 CHL00081 chlI Mg-protoporyphyr 95.0 0.031 6.8E-07 58.5 5.1 52 31-82 13-64 (350)
434 PRK00889 adenylylsulfate kinas 95.0 0.027 5.9E-07 53.5 4.4 28 55-82 3-30 (175)
435 PF03266 NTPase_1: NTPase; In 95.0 0.023 5.1E-07 53.0 3.8 24 59-82 2-25 (168)
436 COG0714 MoxR-like ATPases [Gen 95.0 0.047 1E-06 57.8 6.6 62 37-105 26-87 (329)
437 PF00625 Guanylate_kin: Guanyl 95.0 0.026 5.5E-07 54.1 4.2 38 56-95 2-39 (183)
438 TIGR02322 phosphon_PhnN phosph 95.0 0.02 4.4E-07 54.6 3.4 25 57-81 2-26 (179)
439 cd02024 NRK1 Nicotinamide ribo 95.0 0.018 3.9E-07 54.6 2.9 23 58-80 1-23 (187)
440 cd03283 ABC_MutS-like MutS-lik 95.0 0.12 2.5E-06 50.1 8.6 24 57-80 26-49 (199)
441 cd00046 DEXDc DEAD-like helica 94.9 0.062 1.3E-06 48.5 6.5 37 58-94 2-38 (144)
442 cd00227 CPT Chloramphenicol (C 94.9 0.024 5.3E-07 53.8 3.7 25 57-81 3-27 (175)
443 PRK06217 hypothetical protein; 94.9 0.021 4.5E-07 54.7 3.1 24 58-81 3-26 (183)
444 TIGR00073 hypB hydrogenase acc 94.9 0.031 6.7E-07 54.7 4.4 34 48-81 14-47 (207)
445 COG1120 FepC ABC-type cobalami 94.9 0.074 1.6E-06 52.8 6.9 26 56-81 28-53 (258)
446 PRK08149 ATP synthase SpaL; Va 94.9 0.11 2.3E-06 56.0 8.7 87 56-146 151-252 (428)
447 TIGR01040 V-ATPase_V1_B V-type 94.9 0.093 2E-06 56.4 8.1 91 56-146 141-258 (466)
448 TIGR02030 BchI-ChlI magnesium 94.9 0.044 9.5E-07 57.4 5.7 47 34-80 3-49 (337)
449 CHL00060 atpB ATP synthase CF1 94.9 0.13 2.8E-06 56.0 9.3 92 55-147 160-274 (494)
450 COG4240 Predicted kinase [Gene 94.8 0.19 4.1E-06 47.8 9.0 83 53-136 47-134 (300)
451 PRK09519 recA DNA recombinatio 94.8 0.11 2.4E-06 59.9 9.3 83 56-145 60-148 (790)
452 COG1763 MobB Molybdopterin-gua 94.8 0.027 5.9E-07 51.5 3.6 29 56-84 2-30 (161)
453 PF01078 Mg_chelatase: Magnesi 94.8 0.048 1.1E-06 51.9 5.4 44 34-79 2-45 (206)
454 cd02028 UMPK_like Uridine mono 94.8 0.024 5.1E-07 53.9 3.4 25 58-82 1-25 (179)
455 TIGR02329 propionate_PrpR prop 94.8 0.16 3.4E-06 56.9 10.2 48 33-80 210-259 (526)
456 PF06745 KaiC: KaiC; InterPro 94.8 0.068 1.5E-06 53.2 6.8 48 57-107 20-67 (226)
457 cd02023 UMPK Uridine monophosp 94.8 0.02 4.4E-07 55.7 2.9 23 58-80 1-23 (198)
458 TIGR01069 mutS2 MutS2 family p 94.8 0.038 8.2E-07 64.8 5.5 176 55-253 321-520 (771)
459 cd01136 ATPase_flagellum-secre 94.8 0.14 3E-06 53.2 8.9 87 56-146 69-170 (326)
460 TIGR03881 KaiC_arch_4 KaiC dom 94.8 0.25 5.4E-06 49.3 10.7 39 56-96 20-58 (229)
461 COG0563 Adk Adenylate kinase a 94.8 0.025 5.4E-07 53.4 3.2 24 58-81 2-25 (178)
462 TIGR00750 lao LAO/AO transport 94.8 0.095 2.1E-06 54.5 7.9 40 44-83 20-61 (300)
463 TIGR00416 sms DNA repair prote 94.8 0.076 1.7E-06 58.4 7.5 97 44-145 80-180 (454)
464 cd02021 GntK Gluconate kinase 94.7 0.022 4.8E-07 52.5 2.9 23 58-80 1-23 (150)
465 PRK09435 membrane ATPase/prote 94.7 0.29 6.3E-06 51.1 11.3 50 44-95 42-93 (332)
466 PRK00279 adk adenylate kinase; 94.7 0.15 3.3E-06 50.2 9.0 24 58-81 2-25 (215)
467 PRK05022 anaerobic nitric oxid 94.7 0.052 1.1E-06 61.2 6.3 63 33-97 185-249 (509)
468 PTZ00185 ATPase alpha subunit; 94.7 0.21 4.6E-06 54.2 10.3 90 56-146 189-300 (574)
469 PRK13948 shikimate kinase; Pro 94.7 0.07 1.5E-06 50.5 6.2 27 55-81 9-35 (182)
470 PF03193 DUF258: Protein of un 94.7 0.046 1E-06 50.0 4.7 36 42-80 24-59 (161)
471 COG0467 RAD55 RecA-superfamily 94.7 0.049 1.1E-06 55.6 5.4 50 55-108 22-71 (260)
472 cd00267 ABC_ATPase ABC (ATP-bi 94.7 0.046 1E-06 50.8 4.8 113 57-177 26-144 (157)
473 PRK10416 signal recognition pa 94.6 0.26 5.6E-06 51.4 10.7 29 55-83 113-141 (318)
474 PHA02774 E1; Provisional 94.6 0.074 1.6E-06 58.6 6.8 50 42-95 419-469 (613)
475 cd02020 CMPK Cytidine monophos 94.6 0.026 5.7E-07 51.8 3.1 24 58-81 1-24 (147)
476 COG0003 ArsA Predicted ATPase 94.6 0.069 1.5E-06 55.3 6.3 49 56-106 2-50 (322)
477 PRK14531 adenylate kinase; Pro 94.6 0.11 2.3E-06 49.8 7.3 25 57-81 3-27 (183)
478 TIGR03498 FliI_clade3 flagella 94.6 0.11 2.4E-06 56.0 8.0 88 56-146 140-241 (418)
479 PRK13947 shikimate kinase; Pro 94.6 0.029 6.3E-07 53.1 3.3 24 58-81 3-26 (171)
480 KOG3864 Uncharacterized conser 94.6 0.011 2.4E-07 55.0 0.4 71 619-693 120-190 (221)
481 COG3854 SpoIIIAA ncharacterize 94.5 0.13 2.8E-06 49.0 7.2 124 47-175 128-255 (308)
482 cd02029 PRK_like Phosphoribulo 94.5 0.15 3.2E-06 50.7 8.1 26 58-83 1-26 (277)
483 PF00406 ADK: Adenylate kinase 94.5 0.095 2.1E-06 48.3 6.5 21 61-81 1-21 (151)
484 PF02374 ArsA_ATPase: Anion-tr 94.5 0.057 1.2E-06 56.0 5.5 44 57-102 2-45 (305)
485 PRK14530 adenylate kinase; Pro 94.5 0.033 7E-07 55.0 3.6 25 57-81 4-28 (215)
486 PLN02165 adenylate isopentenyl 94.5 0.042 9E-07 56.7 4.3 30 52-81 39-68 (334)
487 TIGR03496 FliI_clade1 flagella 94.5 0.12 2.7E-06 55.6 8.0 87 56-146 137-238 (411)
488 PRK06936 type III secretion sy 94.5 0.12 2.6E-06 55.6 7.9 89 55-147 161-264 (439)
489 COG3910 Predicted ATPase [Gene 94.5 0.33 7.2E-06 44.8 9.4 27 54-80 35-61 (233)
490 PRK14737 gmk guanylate kinase; 94.5 0.036 7.8E-07 52.9 3.6 26 55-80 3-28 (186)
491 TIGR00176 mobB molybdopterin-g 94.5 0.037 8E-07 51.0 3.6 33 58-91 1-33 (155)
492 COG5238 RNA1 Ran GTPase-activa 94.4 0.024 5.3E-07 55.0 2.3 15 647-661 300-314 (388)
493 COG1936 Predicted nucleotide k 94.4 0.03 6.6E-07 50.9 2.8 20 58-77 2-21 (180)
494 PLN02348 phosphoribulokinase 94.4 0.074 1.6E-06 56.0 6.0 38 44-81 36-74 (395)
495 PRK14529 adenylate kinase; Pro 94.4 0.12 2.6E-06 50.6 7.0 23 59-81 3-25 (223)
496 cd00071 GMPK Guanosine monopho 94.4 0.03 6.4E-07 50.5 2.7 24 58-81 1-24 (137)
497 TIGR03263 guanyl_kin guanylate 94.4 0.03 6.6E-07 53.5 2.9 24 57-80 2-25 (180)
498 cd00820 PEPCK_HprK Phosphoenol 94.3 0.039 8.5E-07 46.5 3.1 22 56-77 15-36 (107)
499 COG0194 Gmk Guanylate kinase [ 94.3 0.041 8.9E-07 50.9 3.5 25 56-80 4-28 (191)
500 KOG1051 Chaperone HSP104 and r 94.3 0.19 4.2E-06 58.5 9.6 126 35-170 562-708 (898)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-76 Score=673.54 Aligned_cols=689 Identities=26% Similarity=0.417 Sum_probs=508.8
Q ss_pred hhHHHHhhhcCCCCccc--cccCcCccccCCCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 3 EFVGTFAAKEGKLDDVW--ITGSKDMWLRSNQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 3 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
++|..+ ..++.|+.+. ..+.+.+...+...... ||.++.++++.+.|.+++..+++|+||||+||||||++++|+.
T Consensus 126 ~~ve~l-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~ 203 (889)
T KOG4658|consen 126 REVESL-GSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKF 203 (889)
T ss_pred HHHHHh-ccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhccc
Confidence 445555 4566676662 22223344444444444 9999999999999998888999999999999999999999999
Q ss_pred H-HhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCC---CchHHHHHHHHHHHcCCcEEEEEeCCCCcccccccccc
Q 003203 81 K-KQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKG---TESERARTLFDRLWKENKILVILDDICTSIDLVTVGIP 156 (839)
Q Consensus 81 ~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~~~~l~~~ 156 (839)
. ++.+|+.++||.||+.++...++++|+..++...... ...+.+..+.+.+ +++|++|||||||+..+|+.+..+
T Consensus 204 ~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L-~~krfllvLDDIW~~~dw~~I~~~ 282 (889)
T KOG4658|consen 204 DEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLL-EGKRFLLVLDDIWEEVDWDKIGVP 282 (889)
T ss_pred chhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHh-ccCceEEEEecccccccHHhcCCC
Confidence 8 8999999999999999999999999999887743322 2234555555555 589999999999999999999999
Q ss_pred CCCCCCCceEEEEeCchhhhhhhcCccceEEccCCCHHHHHHHHHHHhCCCC--CCcchHHHHHHHHHHhCCchhHHHHH
Q 003203 157 FGNAHRGCKILLASRYRDILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYV--EDSDLESIAIQVANECGGLPLAIVIV 234 (839)
Q Consensus 157 l~~~~~~s~iivTtr~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~--~~~~~~~~~~~I~~~~~G~Plai~~~ 234 (839)
++....|++|++|||++.|+...++....+++..|+++|||+||++.++... ..++++++|++++++|+|+|||++++
T Consensus 283 ~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~vi 362 (889)
T KOG4658|consen 283 FPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVL 362 (889)
T ss_pred CCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHH
Confidence 9999999999999999999986688888999999999999999999996642 23448999999999999999999999
Q ss_pred HHHhcCC-ChhHHHHHHHHhhcc-c---ccchHHHHhhhhccccccchhHHHHHHHhcccCCCCCCCcHHHHHHhhhccc
Q 003203 235 ARALRNK-PLSEWKGALLKLRSS-A---GKLDALVYSSIELSYNYLIDQVLKSAFLLCGLLKHPYDASVMDLLKHGMGLG 309 (839)
Q Consensus 235 ~~~L~~~-~~~~w~~~l~~l~~~-~---~~~~~~~~~~l~~sy~~L~~~~lk~~fl~~a~fp~~~~~~~~~li~~w~~~g 309 (839)
|+.|+.+ +..+|+++.+.+.+. . .+..+.+.+++++||+.||++ +|.||+|||+||+|+.+..+.++..|+|||
T Consensus 363 G~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEG 441 (889)
T KOG4658|consen 363 GGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEG 441 (889)
T ss_pred HHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhcc
Confidence 9999999 778999999998444 2 234677999999999999955 899999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHHHHHhcccccCCC---CCCeEEeeehHHHHHHHhhc-----cCceeEEeeccccccccccc
Q 003203 310 LFEGIYTMQERRDRVYALVHILKDSCLLLDGR---TEDWFSMHDIVRNVAISIAS-----RDHHVIRVRNDILVEWLNND 381 (839)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~---~~~~~~mH~lv~~~~~~~~~-----~e~~~~~~~~~~~~~~~~~~ 381 (839)
|+.+......+++.+.+++.+|++++++.... ...+|+|||+||++|.++++ ++..++..+ ......++..
T Consensus 442 fi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~-~~~~~~~~~~ 520 (889)
T KOG4658|consen 442 FIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDG-VGLSEIPQVK 520 (889)
T ss_pred CcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECC-cCcccccccc
Confidence 99886667778999999999999999998875 34689999999999999998 666444332 3344466666
Q ss_pred cccccceEEecCCCCCCCCCCCCCCCccEEeecCCCC-CCCCChhhhcCCCCccEEEeCCC-cccccCccccCCCCCcEE
Q 003203 382 ILKNCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDP-FFKMPENFFTGMSKLRGLALSEM-QLLSLPPSVHLLSNLQTL 459 (839)
Q Consensus 382 ~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~~~~l~~L~~L 459 (839)
.+..+|++++.++.+..++....+++|++|.+.++.. ...++..+|..++.|++|||++| .+..+|++|++|-||
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L--- 597 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL--- 597 (889)
T ss_pred chhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh---
Confidence 6788999999999999999999999999999999874 67888889999999999999987 556788776655554
Q ss_pred EccCCCcCCCcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccc
Q 003203 460 CLDQCVVGDISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWE 539 (839)
Q Consensus 460 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~ 539 (839)
|+|+++++.++.+|.++++|++|.+|++..+..+..+|. ++..|++|++|.+......
T Consensus 598 -------------------ryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~-- 655 (889)
T KOG4658|consen 598 -------------------RYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALS-- 655 (889)
T ss_pred -------------------hcccccCCCccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccccc--
Confidence 555555556667777777777777777777665555543 3556788888877554311
Q ss_pred cccccccccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHHH
Q 003203 540 FEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDEI 619 (839)
Q Consensus 540 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~ 619 (839)
.....+.++..+.+|+.+.+.......+.+......|.
T Consensus 656 -------~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~----------------------------------- 693 (889)
T KOG4658|consen 656 -------NDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLR----------------------------------- 693 (889)
T ss_pred -------cchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHH-----------------------------------
Confidence 23345566677777777666543320000000001110
Q ss_pred HHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCccccc-ccccchhhhhcccccccccccc
Q 003203 620 LMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFD-AFPLLESLVLHNLIHMEKICHS 698 (839)
Q Consensus 620 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~-~~p~L~~L~l~~~~~l~~~~~~ 698 (839)
...+.+.+.+|..... ......+.+|+.|.+.+|...+............ .||+|..+.+.+|..++....
T Consensus 694 ----~~~~~l~~~~~~~~~~---~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~- 765 (889)
T KOG4658|consen 694 ----SLLQSLSIEGCSKRTL---ISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW- 765 (889)
T ss_pred ----HHhHhhhhccccccee---ecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccch-
Confidence 1111122111111111 1122456777777877776544322211111222 378888888888888776532
Q ss_pred cccccccCCCCEEEEecCCCcccccchhhhhcCC----------CccEE-EEecccchHHHhhcccCCccccCCCccccc
Q 003203 699 QLTAVSFCNLKIIKVRNCDRLKNVFSFSIARGLP----------QLQTI-TVIKCKNVEEIFMMERDGYVDCKEVNKIEF 767 (839)
Q Consensus 699 ~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~----------~L~~L-~l~~c~~L~~l~~~~~~~~~~~~~~~~~~l 767 (839)
..-.|+|+.|.+..|..+....+. ...+. +++.+ .+.+.+.+.++... -..+
T Consensus 766 ---~~f~~~L~~l~l~~~~~~e~~i~~--~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~------------~l~~ 828 (889)
T KOG4658|consen 766 ---LLFAPHLTSLSLVSCRLLEDIIPK--LKALLELKELILPFNKLEGLRMLCSLGGLPQLYWL------------PLSF 828 (889)
T ss_pred ---hhccCcccEEEEecccccccCCCH--HHHhhhcccEEecccccccceeeecCCCCceeEec------------ccCc
Confidence 234588999999999888876542 22233 33333 23333333332111 1235
Q ss_pred cccceeecccccccccccccc
Q 003203 768 SQLRSLTLKFLPRLRSFYFQM 788 (839)
Q Consensus 768 ~~L~~L~l~~c~~L~~l~~~~ 788 (839)
++|+.+.+..||++.++|...
T Consensus 829 ~~l~~~~ve~~p~l~~~P~~~ 849 (889)
T KOG4658|consen 829 LKLEELIVEECPKLGKLPLLS 849 (889)
T ss_pred cchhheehhcCcccccCcccc
Confidence 668888888899888888763
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.9e-65 Score=621.29 Aligned_cols=746 Identities=20% Similarity=0.252 Sum_probs=522.4
Q ss_pred cCCCCCccccchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEE---ecCC-----
Q 003203 29 RSNQGYKSFESRKSILCDILDWLT--SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLA---SSTA----- 98 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~---~~~~----- 98 (839)
.++.+..++|||+..++++..++. .+++++|+|+||||+||||||+++|++... .|++.+|+.. +...
T Consensus 178 ~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~~~v~~~~~~~~~ 255 (1153)
T PLN03210 178 TPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR--QFQSSVFIDRAFISKSMEIYSS 255 (1153)
T ss_pred ccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh--cCCeEEEeeccccccchhhccc
Confidence 345567789999999999999986 567899999999999999999999998874 5888877642 1110
Q ss_pred ------C-HHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccccccccccCCCCCCCceEEEEeC
Q 003203 99 ------N-VKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSIDLVTVGIPFGNAHRGCKILLASR 171 (839)
Q Consensus 99 ------~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr 171 (839)
+ ...++++++..+........ .....+.+++ .++|+||||||||+..+|+.+.....+.++|++||||||
T Consensus 256 ~~~~~~~~~~~l~~~~l~~il~~~~~~~--~~~~~~~~~L-~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTr 332 (1153)
T PLN03210 256 ANPDDYNMKLHLQRAFLSEILDKKDIKI--YHLGAMEERL-KHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITK 332 (1153)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCccc--CCHHHHHHHH-hCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeC
Confidence 0 12334444444322211110 1112344455 579999999999999999998877777789999999999
Q ss_pred chhhhhhhcCccceEEccCCCHHHHHHHHHHHhCCCC-CCcchHHHHHHHHHHhCCchhHHHHHHHHhcCCChhHHHHHH
Q 003203 172 YRDILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYV-EDSDLESIAIQVANECGGLPLAIVIVARALRNKPLSEWKGAL 250 (839)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~-~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~~~~~w~~~l 250 (839)
++.++. ..+...+|+++.+++++|++||+++|+... .+.++.+++++|+++|+|+|||++++|++|++++..+|+.++
T Consensus 333 d~~vl~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l 411 (1153)
T PLN03210 333 DKHFLR-AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDML 411 (1153)
T ss_pred cHHHHH-hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 999986 455678999999999999999999996533 445678899999999999999999999999999999999999
Q ss_pred HHhhcccccchHHHHhhhhccccccchhHHHHHHHhcccCCCCCCCcHHHHHHhhhccccccccccHHHHHHHHHHHHHH
Q 003203 251 LKLRSSAGKLDALVYSSIELSYNYLIDQVLKSAFLLCGLLKHPYDASVMDLLKHGMGLGLFEGIYTMQERRDRVYALVHI 330 (839)
Q Consensus 251 ~~l~~~~~~~~~~~~~~l~~sy~~L~~~~lk~~fl~~a~fp~~~~~~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~l~~ 330 (839)
++++... +..+..++++||+.|+++..|.||+++|+|+.+..++ .+..|++.+... ....++.
T Consensus 412 ~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~-----------~~~~l~~ 474 (1153)
T PLN03210 412 PRLRNGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD-----------VNIGLKN 474 (1153)
T ss_pred HHHHhCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC-----------chhChHH
Confidence 9986543 3568899999999998753599999999999665433 355666654332 1224788
Q ss_pred HHhcccccCCCCCCeEEeeehHHHHHHHhhccCc------eeEEeeccccccccccc-----------------------
Q 003203 331 LKDSCLLLDGRTEDWFSMHDIVRNVAISIASRDH------HVIRVRNDILVEWLNND----------------------- 381 (839)
Q Consensus 331 L~~~~ll~~~~~~~~~~mH~lv~~~~~~~~~~e~------~~~~~~~~~~~~~~~~~----------------------- 381 (839)
|++++|++.. .+.++|||++|+||++++.++. .+.....+.........
T Consensus 475 L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~ 552 (1153)
T PLN03210 475 LVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHEN 552 (1153)
T ss_pred HHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHH
Confidence 9999999875 3579999999999999987653 11111110000011111
Q ss_pred ---cccccceEEecCCCC-------CCCCCCC-CC-CCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCcc
Q 003203 382 ---ILKNCSAVFLNDIKT-------GVLPEGL-EY-PQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPS 449 (839)
Q Consensus 382 ---~~~~~~~l~l~~~~~-------~~l~~~~-~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~ 449 (839)
.+.+++.+.+..+.. ..+|..+ .+ ++||.|.+.++. ...+|..+ .+.+|+.|+++++.+..+|..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~ 629 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNF--RPENLVKLQMQGSKLEKLWDG 629 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcC--CccCCcEEECcCccccccccc
Confidence 133344444432211 1234333 22 356777766654 45666654 467888999998888888888
Q ss_pred ccCCCCCcEEEccCCC-cCCCcccCCCCCCCEEEccCC-CCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccC
Q 003203 450 VHLLSNLQTLCLDQCV-VGDISIIGNLKKLEILSLVDS-DIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLE 527 (839)
Q Consensus 450 ~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~ 527 (839)
+..+++|++|++++|. +..++.++.+++|++|++++| .+..+|..++++++|++|++++|..++.+|.. + ++++|+
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~ 707 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLY 707 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCC
Confidence 8889999999998874 556777888999999999988 67788999999999999999999888888875 3 788999
Q ss_pred eEEccCCccccccccccccccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCC---C--------C
Q 003203 528 ELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEW---D--------W 596 (839)
Q Consensus 528 ~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~---~--------~ 596 (839)
.|++++|.....++ ...++|+.|+++++.+..+|..+...+|..|.+..+... . .
T Consensus 708 ~L~Lsgc~~L~~~p--------------~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~ 773 (1153)
T PLN03210 708 RLNLSGCSRLKSFP--------------DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLM 773 (1153)
T ss_pred EEeCCCCCCccccc--------------cccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhh
Confidence 99998886542222 124578899999999888888776677777766542211 0 1
Q ss_pred CCCCCCccEEEecccCCcc-hHHHHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccc
Q 003203 597 SGKSDNTRALKLKLCSSIY-LDEILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCF 675 (839)
Q Consensus 597 ~~~~~~l~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 675 (839)
...+++|+.|++++|.... .+..+..+++|+.|++.+|..+..++... .+++|+.|++++|..+..+++
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~---~L~sL~~L~Ls~c~~L~~~p~------- 843 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI---NLESLESLDLSGCSRLRTFPD------- 843 (1153)
T ss_pred hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC---CccccCEEECCCCCccccccc-------
Confidence 1234678888888776544 34467778888888888888777654432 578888888888887765543
Q ss_pred cccccchhhhhcccccccccccccccccccCCCCEEEEecCCCcccccchhhhhcCCCccEEEEecccchHHHhhcccCC
Q 003203 676 DAFPLLESLVLHNLIHMEKICHSQLTAVSFCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKCKNVEEIFMMERDG 755 (839)
Q Consensus 676 ~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~ 755 (839)
..++|+.|++.+. .++.++ .....+++|+.|++.+|++|+.++.. ...+++|+.+++++|++|+.+.......
T Consensus 844 -~~~nL~~L~Ls~n-~i~~iP---~si~~l~~L~~L~L~~C~~L~~l~~~--~~~L~~L~~L~l~~C~~L~~~~l~~~~~ 916 (1153)
T PLN03210 844 -ISTNISDLNLSRT-GIEEVP---WWIEKFSNLSFLDMNGCNNLQRVSLN--ISKLKHLETVDFSDCGALTEASWNGSPS 916 (1153)
T ss_pred -cccccCEeECCCC-CCccCh---HHHhcCCCCCEEECCCCCCcCccCcc--cccccCCCeeecCCCcccccccCCCCch
Confidence 2357888888763 455553 23567899999999999999988763 4678999999999999998664322110
Q ss_pred ccc-cCCCccccccccceeeccccccccccccc-----cccchhhhhhhhhhcccccccee---eccCcCCCCCCccccc
Q 003203 756 YVD-CKEVNKIEFSQLRSLTLKFLPRLRSFYFQ-----MEASATAKETHRELTTHRWTNKV---ILKDEFDTPIPLFNEM 826 (839)
Q Consensus 756 ~~~-~~~~~~~~l~~L~~L~l~~c~~L~~l~~~-----~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 826 (839)
... ........+|+...+.+.+|.+|..-..- ...-..+-.+++.+++|+..-.. +.......+.++|...
T Consensus 917 ~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~l~~~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~ 996 (1153)
T PLN03210 917 EVAMATDNIHSKLPSTVCINFINCFNLDQEALLQQQSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFR 996 (1153)
T ss_pred hhhhhcccccccCCchhccccccccCCCchhhhcccccceEEECCCccCchhccCCcccceeeeeccCCcccCCCccceE
Confidence 000 00111234666677888888887532210 00011222567888877653332 3322223345678888
Q ss_pred ccchhhhhc
Q 003203 827 VPLLLQFYS 835 (839)
Q Consensus 827 ~~~~~~~~~ 835 (839)
.|+.+.+..
T Consensus 997 ~c~v~~~~~ 1005 (1153)
T PLN03210 997 ACAVVDSES 1005 (1153)
T ss_pred EEEEEecCc
Confidence 887775544
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.5e-41 Score=354.64 Aligned_cols=272 Identities=31% Similarity=0.490 Sum_probs=218.0
Q ss_pred hHHHHHHHHHHhcC--CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhcc-
Q 003203 40 RKSILCDILDWLTS--PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELC- 116 (839)
Q Consensus 40 R~~~~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~- 116 (839)
||+++++|.++|.+ ++.++|+|+|+||+||||||.+++++...+.+|+.++|++++...+...++.+|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999997 789999999999999999999999997788899999999999999999999999999987743
Q ss_pred ---CCCchHHHHHHHHHHHcCCcEEEEEeCCCCccccccccccCCCCCCCceEEEEeCchhhhhhhcCccceEEccCCCH
Q 003203 117 ---KGTESERARTLFDRLWKENKILVILDDICTSIDLVTVGIPFGNAHRGCKILLASRYRDILVSEMHSQYNYCVSVLNK 193 (839)
Q Consensus 117 ---~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~~~~~~~~~~~~~~l~~L~~ 193 (839)
.....+....+.+.+ .++++||||||||+...|+.+...++....|++||||||+..++.........|++++|+.
T Consensus 81 ~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELL-KDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHH-CCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhh-ccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 233444555555555 5689999999999999998888777777789999999999988763333367899999999
Q ss_pred HHHHHHHHHHhCCCC--CCcchHHHHHHHHHHhCCchhHHHHHHHHhcCC-ChhHHHHHHHHhhcccc---cchHHHHhh
Q 003203 194 EEAWSLFKKMVGDYV--EDSDLESIAIQVANECGGLPLAIVIVARALRNK-PLSEWKGALLKLRSSAG---KLDALVYSS 267 (839)
Q Consensus 194 ~ea~~Lf~~~~~~~~--~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~-~~~~w~~~l~~l~~~~~---~~~~~~~~~ 267 (839)
+||++||.+.++... ..+..++.+++|+++|+|+||||+++|++|+.+ +..+|+.+++++..... .....+..+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999996543 334556779999999999999999999999655 78899999998844332 235779999
Q ss_pred hhccccccchhHHHHHHHhcccCCCCCCCcHHHHHHhhhccccccc
Q 003203 268 IELSYNYLIDQVLKSAFLLCGLLKHPYDASVMDLLKHGMGLGLFEG 313 (839)
Q Consensus 268 l~~sy~~L~~~~lk~~fl~~a~fp~~~~~~~~~li~~w~~~g~~~~ 313 (839)
+.+||+.||++ +|+||+|||+||+++.++.+.++++|+++|++..
T Consensus 240 l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 240 LELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 99999999997 7999999999999999999999999999999875
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=1.3e-24 Score=265.96 Aligned_cols=369 Identities=18% Similarity=0.176 Sum_probs=193.8
Q ss_pred ccccceEEecCCCCC-CCCCCC--CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccc-ccCccccCCCCCcE
Q 003203 383 LKNCSAVFLNDIKTG-VLPEGL--EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLL-SLPPSVHLLSNLQT 458 (839)
Q Consensus 383 ~~~~~~l~l~~~~~~-~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~ 458 (839)
+++++.+.+++|.+. .+|..+ .+++|+.|++++|.....+|. ..+++|++|++++|.+. .+|..++++++|++
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 445666666666653 555543 566666666666665444553 34566666666666665 55666666667777
Q ss_pred EEccCCCcCC--CcccCCCCCCCEEEccCCCCC-CCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCc
Q 003203 459 LCLDQCVVGD--ISIIGNLKKLEILSLVDSDIE-RLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTS 535 (839)
Q Consensus 459 L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~ 535 (839)
|++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNN 247 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCce
Confidence 7776666543 455666666777777666655 45666666666777766666544455554 6666667777666665
Q ss_pred cccccccccccccccchhhhccCCCCCEEEEEeccccC-CCcccc-ccccceEEEEEcCCC----CCCCCCCCccEEEec
Q 003203 536 VKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMI-LPKGLF-SKKLERYKIYIGDEW----DWSGKSDNTRALKLK 609 (839)
Q Consensus 536 ~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~-~~~~~~-~~~L~~l~l~~~~~~----~~~~~~~~l~~L~l~ 609 (839)
+.... +..++.+++|+.|++++|.+.. +|..+. ..+|+.|+++.+... .+...+++|+.|++.
T Consensus 248 l~~~~-----------p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 316 (968)
T PLN00113 248 LTGPI-----------PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316 (968)
T ss_pred ecccc-----------ChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence 53222 2445566666666666655542 333322 255666665544321 223445566666665
Q ss_pred ccCCcch-HHHHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecC-------------------
Q 003203 610 LCSSIYL-DEILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDS------------------- 669 (839)
Q Consensus 610 ~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~------------------- 669 (839)
.+..... +..+..+++|+.|++.++.-....+.. .+.+++|+.|++++|.....++..
T Consensus 317 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~ 394 (968)
T PLN00113 317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN--LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG 394 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH--HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecc
Confidence 5544322 224455666666666655433222221 134556666666655432222210
Q ss_pred CCcccccccccchhhhhcccccccccccccccccccCCCCEEEEecCCCcccccchhhhhcCCCccEEEEecccchHHHh
Q 003203 670 TAWVCFDAFPLLESLVLHNLIHMEKICHSQLTAVSFCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKCKNVEEIF 749 (839)
Q Consensus 670 ~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~ 749 (839)
......+.+++|+.|++.+|.-...++ .....+++|+.|++++|. +....+. ....+++|+.|++++|.-...++
T Consensus 395 ~~p~~~~~~~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~n~~~~~~p 469 (968)
T PLN00113 395 EIPKSLGACRSLRRVRLQDNSFSGELP---SEFTKLPLVYFLDISNNN-LQGRINS-RKWDMPSLQMLSLARNKFFGGLP 469 (968)
T ss_pred cCCHHHhCCCCCCEEECcCCEeeeECC---hhHhcCCCCCEEECcCCc-ccCccCh-hhccCCCCcEEECcCceeeeecC
Confidence 000122344555555555543222221 113345555556655543 2222221 22455666666666664332221
Q ss_pred hcccCCccccCCCccccccccceeecccccccccccc
Q 003203 750 MMERDGYVDCKEVNKIEFSQLRSLTLKFLPRLRSFYF 786 (839)
Q Consensus 750 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~ 786 (839)
. ....++|+.|++++|.-...+|.
T Consensus 470 ~-------------~~~~~~L~~L~ls~n~l~~~~~~ 493 (968)
T PLN00113 470 D-------------SFGSKRLENLDLSRNQFSGAVPR 493 (968)
T ss_pred c-------------ccccccceEEECcCCccCCccCh
Confidence 1 11246777888877754444443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=1.2e-24 Score=266.08 Aligned_cols=264 Identities=23% Similarity=0.259 Sum_probs=117.7
Q ss_pred ccceEEecCCCC-CCCCCCC-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccc-ccCccccCCCCCcEEEc
Q 003203 385 NCSAVFLNDIKT-GVLPEGL-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLL-SLPPSVHLLSNLQTLCL 461 (839)
Q Consensus 385 ~~~~l~l~~~~~-~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l 461 (839)
+++.+++.+|.+ +.+|..+ .+++|+.|++++|.....+|..+ +++++|++|++++|.+. .+|..++++++|++|++
T Consensus 189 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267 (968)
T ss_pred CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEEC
Confidence 344444444443 2333332 44444555544444333333332 44445555555544443 34444444555555555
Q ss_pred cCCCcCC--CcccCCCCCCCEEEccCCCCC-CCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcccc
Q 003203 462 DQCVVGD--ISIIGNLKKLEILSLVDSDIE-RLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKW 538 (839)
Q Consensus 462 ~~~~~~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~ 538 (839)
++|.+.. +..+.++++|++|++++|.+. .+|..+.++++|++|++++|...+.+|.. ++.+++|+.|++++|.+..
T Consensus 268 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~n~l~~ 346 (968)
T PLN00113 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQLWSNKFSG 346 (968)
T ss_pred cCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh-HhcCCCCCEEECcCCCCcC
Confidence 5444432 234444455555555554443 34444444555555555544433333332 4445555555555444331
Q ss_pred ccccccccccccchhhhccCCCCCEEEEEeccccC-CCccccc-cccceEEEEEcCCC----CCCCCCCCccEEEecccC
Q 003203 539 EFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMI-LPKGLFS-KKLERYKIYIGDEW----DWSGKSDNTRALKLKLCS 612 (839)
Q Consensus 539 ~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~-~~~~~~~-~~L~~l~l~~~~~~----~~~~~~~~l~~L~l~~~~ 612 (839)
. .+..++.+++|+.|++++|.+.. .|..+.. .+|+.+.+..+... .+...+++|+.|++..|.
T Consensus 347 ~-----------~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 347 E-----------IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415 (968)
T ss_pred c-----------CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence 1 12344555555555555554432 2322221 44455544433211 123344556666655554
Q ss_pred Ccc-hHHHHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCc
Q 003203 613 SIY-LDEILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFI 663 (839)
Q Consensus 613 ~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 663 (839)
... .+..+..+++|+.|++.++.-....... ...+++|+.|++++|...
T Consensus 416 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~n~~~ 465 (968)
T PLN00113 416 FSGELPSEFTKLPLVYFLDISNNNLQGRINSR--KWDMPSLQMLSLARNKFF 465 (968)
T ss_pred eeeECChhHhcCCCCCEEECcCCcccCccChh--hccCCCCcEEECcCceee
Confidence 332 2224445555666666554322211111 123556666666655443
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=3.2e-22 Score=244.23 Aligned_cols=337 Identities=19% Similarity=0.246 Sum_probs=244.3
Q ss_pred CCCCccEEeecCCC------CCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCCCcCC-CcccCCCC
Q 003203 404 EYPQLDFFCMNSKD------PFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGD-ISIIGNLK 476 (839)
Q Consensus 404 ~~~~L~~L~l~~~~------~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~ 476 (839)
++++|+.|.+..+. ....+|..+..-..+||.|.+.++.+..+|..+ ...+|+.|++.+|.+.. +..+..++
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~ 634 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLT 634 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCC
Confidence 68888888886542 112455554333356888988888888888877 56888899998888877 46678888
Q ss_pred CCCEEEccCC-CCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccccccccchhhh
Q 003203 477 KLEILSLVDS-DIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQEL 555 (839)
Q Consensus 477 ~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l 555 (839)
+|++|+++++ .+..+|. +..+++|++|++++|..+..+|.. ++++++|+.|++++|.....++ ..
T Consensus 635 ~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp-----------~~- 700 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILP-----------TG- 700 (1153)
T ss_pred CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccC-----------Cc-
Confidence 8999999887 5667774 778888999999888888888877 8888899999988876543322 11
Q ss_pred ccCCCCCEEEEEecccc-CCCccccccccceEEEEEcCCCCCC--CCCCCccEEEecccCCcchH-------H-HHHHhc
Q 003203 556 RHLSQLTTLEIQIQDAM-ILPKGLFSKKLERYKIYIGDEWDWS--GKSDNTRALKLKLCSSIYLD-------E-ILMQLK 624 (839)
Q Consensus 556 ~~l~~L~~L~l~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~--~~~~~l~~L~l~~~~~~~~~-------~-~~~~l~ 624 (839)
.++++|+.|++++|... .+|.. ..+|+.|.+..+.....+ ..+++|+.|.+..+...... + ....++
T Consensus 701 i~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 701 INLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccc
Confidence 15778888888876432 33322 356777777655432222 23566776766654322111 1 223357
Q ss_pred ccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhcccccccccccccccccc
Q 003203 625 GIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICHSQLTAVS 704 (839)
Q Consensus 625 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~ 704 (839)
+|+.|++.+|.....++..+ +++++|+.|+|++|.+++.+|.. ..+++|+.|++++|..+..++. .
T Consensus 779 sL~~L~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~~------~~L~sL~~L~Ls~c~~L~~~p~------~ 844 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPTG------INLESLESLDLSGCSRLRTFPD------I 844 (1153)
T ss_pred cchheeCCCCCCccccChhh--hCCCCCCEEECCCCCCcCeeCCC------CCccccCEEECCCCCccccccc------c
Confidence 89999999888777665543 67899999999999988887742 2688999999999988877642 2
Q ss_pred cCCCCEEEEecCCCcccccchhhhhcCCCccEEEEecccchHHHhhcccCCccccCCCccccccccceeecccccccccc
Q 003203 705 FCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKCKNVEEIFMMERDGYVDCKEVNKIEFSQLRSLTLKFLPRLRSF 784 (839)
Q Consensus 705 ~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l 784 (839)
.++|+.|++.++ .++.+|. .+..+++|+.|++++|++++.++. ....+++|+.|++++|++|+.+
T Consensus 845 ~~nL~~L~Ls~n-~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~------------~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 845 STNISDLNLSRT-GIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSL------------NISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ccccCEeECCCC-CCccChH--HHhcCCCCCEEECCCCCCcCccCc------------ccccccCCCeeecCCCcccccc
Confidence 468999999884 6777764 468899999999999999998743 3346899999999999999876
Q ss_pred cc
Q 003203 785 YF 786 (839)
Q Consensus 785 ~~ 786 (839)
+.
T Consensus 910 ~l 911 (1153)
T PLN03210 910 SW 911 (1153)
T ss_pred cC
Confidence 53
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=8.9e-24 Score=218.62 Aligned_cols=319 Identities=21% Similarity=0.246 Sum_probs=249.9
Q ss_pred cccccceEEecCCCCCCCCCCC-CCCCccEEeecCCCC-CCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEE
Q 003203 382 ILKNCSAVFLNDIKTGVLPEGL-EYPQLDFFCMNSKDP-FFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTL 459 (839)
Q Consensus 382 ~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L 459 (839)
..+++.++++.+|.+..+...+ .++.||++.+..|+. ...+|.++| ++..|.+||||+|++.+.|..+..-+++-+|
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 3667899999999987666544 899999999998875 346888886 6999999999999999999999999999999
Q ss_pred EccCCCcCCC--cccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccc
Q 003203 460 CLDQCVVGDI--SIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVK 537 (839)
Q Consensus 460 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 537 (839)
+|++|.|..+ +-+-+|..|-+|||++|++..+|+.+..|.+|++|.+++|. +..+--..+..+++|+.|.++++..+
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccch
Confidence 9999999995 55779999999999999999999999999999999999987 44333222566788999999887654
Q ss_pred cccccccccccccchhhhccCCCCCEEEEEeccccCCCccccc-cccceEEEEEcCCCCC---CCCCCCccEEEecccCC
Q 003203 538 WEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFS-KKLERYKIYIGDEWDW---SGKSDNTRALKLKLCSS 613 (839)
Q Consensus 538 ~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~---~~~~~~l~~L~l~~~~~ 613 (839)
....+.++..+.+|+.++++.|+....|+.+.. .+|+.|+++.+..-+. .+.-.++++|+++.+..
T Consensus 211 ----------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQL 280 (1255)
T KOG0444|consen 211 ----------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQL 280 (1255)
T ss_pred ----------hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchh
Confidence 334456778888999999999999999987765 7888888877653322 23346788888888877
Q ss_pred cchHHHHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhccccccc
Q 003203 614 IYLDEILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHME 693 (839)
Q Consensus 614 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~ 693 (839)
..++.....++.|+.|++.+.. +..-....+.+.+.+|+.++..+| +++-+|. .+..|+.|++|.++. +.|.
T Consensus 281 t~LP~avcKL~kL~kLy~n~Nk-L~FeGiPSGIGKL~~Levf~aanN-~LElVPE-----glcRC~kL~kL~L~~-NrLi 352 (1255)
T KOG0444|consen 281 TVLPDAVCKLTKLTKLYANNNK-LTFEGIPSGIGKLIQLEVFHAANN-KLELVPE-----GLCRCVKLQKLKLDH-NRLI 352 (1255)
T ss_pred ccchHHHhhhHHHHHHHhccCc-ccccCCccchhhhhhhHHHHhhcc-ccccCch-----hhhhhHHHHHhcccc-ccee
Confidence 7778888888899988886533 332222234577888888888876 4555553 567888999998874 5566
Q ss_pred ccccccccccccCCCCEEEEecCCCccccc
Q 003203 694 KICHSQLTAVSFCNLKIIKVRNCDRLKNVF 723 (839)
Q Consensus 694 ~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~ 723 (839)
.+|.. ..-++.|+.|++++.++|.--|
T Consensus 353 TLPea---IHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 353 TLPEA---IHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred echhh---hhhcCCcceeeccCCcCccCCC
Confidence 66443 5667889999999888886443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=5.1e-23 Score=213.05 Aligned_cols=342 Identities=21% Similarity=0.286 Sum_probs=195.0
Q ss_pred ccceEEecCCCCCCCCCCC-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccc--ccCccccCCCCCcEEEc
Q 003203 385 NCSAVFLNDIKTGVLPEGL-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLL--SLPPSVHLLSNLQTLCL 461 (839)
Q Consensus 385 ~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l 461 (839)
.++.+-+...++..+|+.+ .+.+|+.|.+.+|.. ..+..+ ++.++.||.+.+..|++. .+|..|..+..|.+|+|
T Consensus 33 ~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L-~~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDL 110 (1255)
T KOG0444|consen 33 QMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQL-ISVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDL 110 (1255)
T ss_pred heeEEEechhhhhhChHHHHHHhhhhhhhhhhhhh-Hhhhhh-hccchhhHHHhhhccccccCCCCchhcccccceeeec
Confidence 4445555555555555444 455555555555543 222222 244555555555555544 45555555555555555
Q ss_pred cCCCcCC-CcccCCCCCCCEEEccCCCCCCCchhh-cCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccc
Q 003203 462 DQCVVGD-ISIIGNLKKLEILSLVDSDIERLPNEI-GQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWE 539 (839)
Q Consensus 462 ~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~ 539 (839)
+.|.+.+ |..+..-+++-+|+|++|+|.++|..+ -+|+.|-.|++++|. +..+|+. +.+|.+|++|.|++|++.
T Consensus 111 ShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~NPL~-- 186 (1255)
T KOG0444|consen 111 SHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSNNPLN-- 186 (1255)
T ss_pred chhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCCChhh--
Confidence 5555555 455555555555555555555555542 355555555555544 5555555 555555666665555542
Q ss_pred cccccccccccchhhhccCCCCCEEEEEecccc--CCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchH
Q 003203 540 FEGLNIERSNASLQELRHLSQLTTLEIQIQDAM--ILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLD 617 (839)
Q Consensus 540 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~ 617 (839)
...+..+..+++|+.|++++.+-+ .+|.. ...+.+|..++++.+.....+
T Consensus 187 ---------hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-------------------ld~l~NL~dvDlS~N~Lp~vP 238 (1255)
T KOG0444|consen 187 ---------HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-------------------LDDLHNLRDVDLSENNLPIVP 238 (1255)
T ss_pred ---------HHHHhcCccchhhhhhhcccccchhhcCCCc-------------------hhhhhhhhhccccccCCCcch
Confidence 112233333444444455443222 22322 234456777777766666667
Q ss_pred HHHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhccccccccccc
Q 003203 618 EILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICH 697 (839)
Q Consensus 618 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~ 697 (839)
..+..+++|+.|+|++.. ++.+.. ..+...+|+.|+++.|. +..+|+ ....+++|++|.+.+. .|+- ..
T Consensus 239 ecly~l~~LrrLNLS~N~-iteL~~--~~~~W~~lEtLNlSrNQ-Lt~LP~-----avcKL~kL~kLy~n~N-kL~F-eG 307 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNK-ITELNM--TEGEWENLETLNLSRNQ-LTVLPD-----AVCKLTKLTKLYANNN-KLTF-EG 307 (1255)
T ss_pred HHHhhhhhhheeccCcCc-eeeeec--cHHHHhhhhhhccccch-hccchH-----HHhhhHHHHHHHhccC-cccc-cC
Confidence 777888888888888743 333222 22456788888888873 455554 5667888888887653 3321 11
Q ss_pred ccccccccCCCCEEEEecCCCcccccchhhhhcCCCccEEEEecccchHHHhhcccCCccccCCCccccccccceeeccc
Q 003203 698 SQLTAVSFCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKCKNVEEIFMMERDGYVDCKEVNKIEFSQLRSLTLKF 777 (839)
Q Consensus 698 ~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 777 (839)
.|...+.+.+|+.+...+ ++|.-+|. ++..|+.|+.|.+.+ ..|-.+ |..+..+|-|+.|++++
T Consensus 308 iPSGIGKL~~Levf~aan-N~LElVPE--glcRC~kL~kL~L~~-NrLiTL------------PeaIHlL~~l~vLDlre 371 (1255)
T KOG0444|consen 308 IPSGIGKLIQLEVFHAAN-NKLELVPE--GLCRCVKLQKLKLDH-NRLITL------------PEAIHLLPDLKVLDLRE 371 (1255)
T ss_pred CccchhhhhhhHHHHhhc-cccccCch--hhhhhHHHHHhcccc-cceeec------------hhhhhhcCCcceeeccC
Confidence 122256677777777766 45665554 567888888888864 344444 44455688888888888
Q ss_pred cccccccccc
Q 003203 778 LPRLRSFYFQ 787 (839)
Q Consensus 778 c~~L~~l~~~ 787 (839)
.|+|.-=|..
T Consensus 372 NpnLVMPPKP 381 (1255)
T KOG0444|consen 372 NPNLVMPPKP 381 (1255)
T ss_pred CcCccCCCCc
Confidence 8888755543
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=9.2e-22 Score=202.71 Aligned_cols=311 Identities=20% Similarity=0.270 Sum_probs=131.0
Q ss_pred ccceEEecCCCCCCCCCCCC-CCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCc-cccCCCCCcEEEcc
Q 003203 385 NCSAVFLNDIKTGVLPEGLE-YPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPP-SVHLLSNLQTLCLD 462 (839)
Q Consensus 385 ~~~~l~l~~~~~~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~ 462 (839)
+++.+++..|....+|.... ..+|+.|++.+|. +..+..+.++-+..||+||||.|.++++|. ++..-.++++|+|+
T Consensus 103 nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La 181 (873)
T KOG4194|consen 103 NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLA 181 (873)
T ss_pred cceeeeeccchhhhcccccccccceeEEeeeccc-cccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeec
Confidence 34444444444444444432 2234444444443 233333333444445555555554444432 23333445555555
Q ss_pred CCCcCCC--cccCCCCCCCEEEccCCCCCCCchh-hcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccc
Q 003203 463 QCVVGDI--SIIGNLKKLEILSLVDSDIERLPNE-IGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWE 539 (839)
Q Consensus 463 ~~~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~ 539 (839)
+|.|+.+ ..|.++.+|-+|.|++|+++.+|.. +.+|++|+.|++..|. ++.+..-.|.+|++|+.|.+..|.+..-
T Consensus 182 ~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL 260 (873)
T KOG4194|consen 182 SNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKL 260 (873)
T ss_pred cccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccc
Confidence 5544442 3444444555555555555544432 2335555555554443 3333222244445555555444443311
Q ss_pred cccccccccccchhhhccCCCCCEEEEEeccccCCCcccc--ccccceEEEEEcCCCC----CCCCCCCccEEEecccCC
Q 003203 540 FEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLF--SKKLERYKIYIGDEWD----WSGKSDNTRALKLKLCSS 613 (839)
Q Consensus 540 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~l~l~~~~~~~----~~~~~~~l~~L~l~~~~~ 613 (839)
.. ..+-.+.++++|++..|.+....++.. .++|+.|+++.+..-. .-+..+.|+.|+|+.+..
T Consensus 261 ~D-----------G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 261 DD-----------GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI 329 (873)
T ss_pred cC-----------cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence 11 123344455555555555544433221 1445555444433111 112234455555554444
Q ss_pred cchHH-HHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhcccccc
Q 003203 614 IYLDE-ILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHM 692 (839)
Q Consensus 614 ~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l 692 (839)
...++ .+..+..|+.|.|+.. .+..+. .....++.+|+.|+|++|..--.|-| ....+.++|+|++|.+.+ +++
T Consensus 330 ~~l~~~sf~~L~~Le~LnLs~N-si~~l~-e~af~~lssL~~LdLr~N~ls~~IED--aa~~f~gl~~LrkL~l~g-Nql 404 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLEELNLSHN-SIDHLA-EGAFVGLSSLHKLDLRSNELSWCIED--AAVAFNGLPSLRKLRLTG-NQL 404 (873)
T ss_pred ccCChhHHHHHHHhhhhccccc-chHHHH-hhHHHHhhhhhhhcCcCCeEEEEEec--chhhhccchhhhheeecC-cee
Confidence 44333 4444455555555431 121111 11123345555555555432222211 112333455555555554 344
Q ss_pred cccccccccccccCCCCEEEEec
Q 003203 693 EKICHSQLTAVSFCNLKIIKVRN 715 (839)
Q Consensus 693 ~~~~~~~~~~~~~~~L~~L~i~~ 715 (839)
+.++... ...+++|+.|++.+
T Consensus 405 k~I~krA--fsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 405 KSIPKRA--FSGLEALEHLDLGD 425 (873)
T ss_pred eecchhh--hccCcccceecCCC
Confidence 4443222 22345555555544
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=1.1e-20 Score=194.98 Aligned_cols=339 Identities=18% Similarity=0.224 Sum_probs=259.1
Q ss_pred cccccceEEecCCCCCCCCCC--CCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccccc-CccccCCCCCcE
Q 003203 382 ILKNCSAVFLNDIKTGVLPEG--LEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSL-PPSVHLLSNLQT 458 (839)
Q Consensus 382 ~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~ 458 (839)
.+...+.+.+++|++..+... .++++|+.+.+..|. ...+|.-. ....+|+.|+|.+|.|+++ .+.+..++.||+
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRS 153 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccch-hhhccccc-ccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence 355677899999998776544 489999999998887 46777622 3455699999999999876 457788999999
Q ss_pred EEccCCCcCCC--cccCCCCCCCEEEccCCCCCCCch-hhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCc
Q 003203 459 LCLDQCVVGDI--SIIGNLKKLEILSLVDSDIERLPN-EIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTS 535 (839)
Q Consensus 459 L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~ 535 (839)
|||+.|.+..+ +.+..=.++++|+|++|.|+.+-. .+..+.+|.+|.+++|. ++.+|...|.+|++|+.|+|..|.
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccc
Confidence 99999998884 667777899999999999998744 57788899999999987 899999888999999999999998
Q ss_pred cccccccccccccccchhhhccCCCCCEEEEEeccccCCCccccc--cccceEEEEEcCCC----CCCCCCCCccEEEec
Q 003203 536 VKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFS--KKLERYKIYIGDEW----DWSGKSDNTRALKLK 609 (839)
Q Consensus 536 ~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~l~l~~~~~~----~~~~~~~~l~~L~l~ 609 (839)
+... .-..++.+++|+.|.+..|++..+.++.|. .+++.+++..+... .|.-.+..|+.|+++
T Consensus 233 iriv-----------e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 233 IRIV-----------EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLS 301 (873)
T ss_pred eeee-----------hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccc
Confidence 7521 124578899999999999999999998876 88999999877633 577788999999999
Q ss_pred ccCCcchHH-HHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhcc
Q 003203 610 LCSSIYLDE-ILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHN 688 (839)
Q Consensus 610 ~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~ 688 (839)
.+....... .....++|+.|+|++.. +..+.+. ....+..|++|.|++|. +..+-+ ..+..+.+|++|++++
T Consensus 302 ~NaI~rih~d~WsftqkL~~LdLs~N~-i~~l~~~-sf~~L~~Le~LnLs~Ns-i~~l~e----~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 302 YNAIQRIHIDSWSFTQKLKELDLSSNR-ITRLDEG-SFRVLSQLEELNLSHNS-IDHLAE----GAFVGLSSLHKLDLRS 374 (873)
T ss_pred hhhhheeecchhhhcccceeEeccccc-cccCChh-HHHHHHHhhhhcccccc-hHHHHh----hHHHHhhhhhhhcCcC
Confidence 876655443 55678899999998743 3332221 12456889999999985 222221 2456788999999987
Q ss_pred cccccccccccccccccCCCCEEEEecCCCcccccchhhhhcCCCccEEEEeccc
Q 003203 689 LIHMEKICHSQLTAVSFCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKCK 743 (839)
Q Consensus 689 ~~~l~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 743 (839)
..---.+-........+++|+.|.+.+ ++++.++... +.++++||+|++.+..
T Consensus 375 N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krA-fsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 375 NELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRA-FSGLEALEHLDLGDNA 427 (873)
T ss_pred CeEEEEEecchhhhccchhhhheeecC-ceeeecchhh-hccCcccceecCCCCc
Confidence 432111212222344589999999998 6799997754 4789999999997753
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=7.3e-21 Score=187.71 Aligned_cols=237 Identities=24% Similarity=0.340 Sum_probs=115.0
Q ss_pred cceEEecCCCCCCCCCCC-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCC
Q 003203 386 CSAVFLNDIKTGVLPEGL-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQC 464 (839)
Q Consensus 386 ~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~ 464 (839)
+..+.+++|+...+|+.+ .+..+..++++.|+. ..+|..+ ..+.+|+.|+++.|.+.++|++++.+..|..|+..+|
T Consensus 70 l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~l-s~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N 147 (565)
T KOG0472|consen 70 LTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKL-SELPEQI-GSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN 147 (565)
T ss_pred eeEEEeccchhhhCCHHHHHHHHHHHhhcccchH-hhccHHH-hhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc
Confidence 344444445444444433 444444444444442 3344433 3444455555555555555555555555555555555
Q ss_pred CcCC-CcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccc
Q 003203 465 VVGD-ISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGL 543 (839)
Q Consensus 465 ~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~ 543 (839)
.+.. |+.++++.+|..|++.+|.++.+|+..-+++.|++|+...|- ++.+|++ ++.+.+|+.|++..|.+.
T Consensus 148 ~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~-lg~l~~L~~LyL~~Nki~------ 219 (565)
T KOG0472|consen 148 QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-LETLPPE-LGGLESLELLYLRRNKIR------ 219 (565)
T ss_pred ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-hhcCChh-hcchhhhHHHHhhhcccc------
Confidence 4444 444555555555555555555554444445555555554433 4555554 455555555555555443
Q ss_pred cccccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHHHHHHh
Q 003203 544 NIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDEILMQL 623 (839)
Q Consensus 544 ~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l 623 (839)
.+.++..+..|++|+++.|.+..+|.... ..++++..|+++++.....+.-...+
T Consensus 220 -------~lPef~gcs~L~Elh~g~N~i~~lpae~~------------------~~L~~l~vLDLRdNklke~Pde~clL 274 (565)
T KOG0472|consen 220 -------FLPEFPGCSLLKELHVGENQIEMLPAEHL------------------KHLNSLLVLDLRDNKLKEVPDEICLL 274 (565)
T ss_pred -------cCCCCCccHHHHHHHhcccHHHhhHHHHh------------------cccccceeeeccccccccCchHHHHh
Confidence 22344455555555555555555444332 23445555555555554445455555
Q ss_pred cccceEEeccccCchhhccccccCCCCCCCeeeeccCC
Q 003203 624 KGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNP 661 (839)
Q Consensus 624 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 661 (839)
.+|..|++++ +.+...+.. .+++ .|+.|.+.|||
T Consensus 275 rsL~rLDlSN-N~is~Lp~s--Lgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 275 RSLERLDLSN-NDISSLPYS--LGNL-HLKFLALEGNP 308 (565)
T ss_pred hhhhhhcccC-CccccCCcc--cccc-eeeehhhcCCc
Confidence 5566666554 222223222 2444 55555555554
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=3.3e-20 Score=183.15 Aligned_cols=144 Identities=25% Similarity=0.340 Sum_probs=83.8
Q ss_pred eEEecCCCCCCCCCCC-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCCCc
Q 003203 388 AVFLNDIKTGVLPEGL-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVV 466 (839)
Q Consensus 388 ~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 466 (839)
.+.+.+|++..+|+.. .++.|+.|+...|- ...+|+++ +++.+|..|++..|.+..+| .|+.+..|..|++..|.+
T Consensus 164 ~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~l-g~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i 240 (565)
T KOG0472|consen 164 KLDLEGNKLKALPENHIAMKRLKHLDCNSNL-LETLPPEL-GGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQI 240 (565)
T ss_pred HhhccccchhhCCHHHHHHHHHHhcccchhh-hhcCChhh-cchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHH
Confidence 3344444443333322 44444444443332 23444443 44444444444444444444 444444455555554444
Q ss_pred CCC-c-ccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccc
Q 003203 467 GDI-S-IIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVK 537 (839)
Q Consensus 467 ~~~-~-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 537 (839)
+.+ . ...++.+|.+||+++|+++++|.++..+++|.+||+++|. ++.+|.. +|++ .|+.|-+.+|++.
T Consensus 241 ~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~-is~Lp~s-Lgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 241 EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNND-ISSLPYS-LGNL-HLKFLALEGNPLR 310 (565)
T ss_pred HhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCc-cccCCcc-cccc-eeeehhhcCCchH
Confidence 442 2 2336777888888888888888888888888888888765 7777777 7877 7888888777754
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.70 E-value=7.7e-19 Score=191.38 Aligned_cols=240 Identities=20% Similarity=0.229 Sum_probs=136.7
Q ss_pred ccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCCEEEEEeccccCCCcccc
Q 003203 500 QLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLF 579 (839)
Q Consensus 500 ~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~ 579 (839)
+|++++++.+. +..+| +.++.+.+|+.+...+|.+. ..+..+....+|+.|.+..|.+..+|+...
T Consensus 242 nl~~~dis~n~-l~~lp-~wi~~~~nle~l~~n~N~l~------------~lp~ri~~~~~L~~l~~~~nel~yip~~le 307 (1081)
T KOG0618|consen 242 NLQYLDISHNN-LSNLP-EWIGACANLEALNANHNRLV------------ALPLRISRITSLVSLSAAYNELEYIPPFLE 307 (1081)
T ss_pred cceeeecchhh-hhcch-HHHHhcccceEecccchhHH------------hhHHHHhhhhhHHHHHhhhhhhhhCCCccc
Confidence 56666777654 67777 44777888888887777663 122333333444444444444444443333
Q ss_pred -ccccceEEEEEcCCCCCCCCC-----CCccEEEecccCCcchHH-HHHHhcccceEEeccccCchhhccccccCCCCCC
Q 003203 580 -SKKLERYKIYIGDEWDWSGKS-----DNTRALKLKLCSSIYLDE-ILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQL 652 (839)
Q Consensus 580 -~~~L~~l~l~~~~~~~~~~~~-----~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L 652 (839)
.+.|+.|++..+....++..+ ..+..++.+.......+. .-..++.|+.|++.+..-..+..+.+ .++++|
T Consensus 308 ~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l--~~~~hL 385 (1081)
T KOG0618|consen 308 GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL--VNFKHL 385 (1081)
T ss_pred ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh--ccccce
Confidence 244444444333222111100 001111111100000000 11234567777777755444444433 568999
Q ss_pred CeeeeccCCCcceeecCCCcccccccccchhhhhcccccccccccccccccccCCCCEEEEecCCCcccccchhhhhcCC
Q 003203 653 KHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICHSQLTAVSFCNLKIIKVRNCDRLKNVFSFSIARGLP 732 (839)
Q Consensus 653 ~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~ 732 (839)
+.|+|++|. +.++|+ .....++.|++|.+++ ++|+.++. ....++.|++|...+ +.+...|. +..++
T Consensus 386 KVLhLsyNr-L~~fpa----s~~~kle~LeeL~LSG-NkL~~Lp~---tva~~~~L~tL~ahs-N~l~~fPe---~~~l~ 452 (1081)
T KOG0618|consen 386 KVLHLSYNR-LNSFPA----SKLRKLEELEELNLSG-NKLTTLPD---TVANLGRLHTLRAHS-NQLLSFPE---LAQLP 452 (1081)
T ss_pred eeeeecccc-cccCCH----HHHhchHHhHHHhccc-chhhhhhH---HHHhhhhhHHHhhcC-Cceeechh---hhhcC
Confidence 999999873 444443 2456778888999988 56777753 255677888887655 45666654 47889
Q ss_pred CccEEEEecccchHHHhhcccCCccccCCCccccccccceeecccccc
Q 003203 733 QLQTITVIKCKNVEEIFMMERDGYVDCKEVNKIEFSQLRSLTLKFLPR 780 (839)
Q Consensus 733 ~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 780 (839)
+|+.++++ |.+|+.+...+.. ..|+||+|+++|.+.
T Consensus 453 qL~~lDlS-~N~L~~~~l~~~~-----------p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 453 QLKVLDLS-CNNLSEVTLPEAL-----------PSPNLKYLDLSGNTR 488 (1081)
T ss_pred cceEEecc-cchhhhhhhhhhC-----------CCcccceeeccCCcc
Confidence 99999996 6788877654432 127899999999875
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.64 E-value=1.4e-17 Score=181.71 Aligned_cols=347 Identities=24% Similarity=0.315 Sum_probs=189.8
Q ss_pred EecCCCCCCCCCCC-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCCCcCC
Q 003203 390 FLNDIKTGVLPEGL-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGD 468 (839)
Q Consensus 390 ~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 468 (839)
+.+++..+.+|..+ ....+..|.+..|.. ...|-++..+.-+|+.|++++|.+...|..+..+++|+.|+++.|.+..
T Consensus 4 d~s~~~l~~ip~~i~~~~~~~~ln~~~N~~-l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~ 82 (1081)
T KOG0618|consen 4 DASDEQLELIPEQILNNEALQILNLRRNSL-LSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRS 82 (1081)
T ss_pred ccccccCcccchhhccHHHHHhhhcccccc-ccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhh
Confidence 34444555555443 222255555555543 3344444455555777777777777777777777777777777776666
Q ss_pred -CcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCC-------------
Q 003203 469 -ISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNT------------- 534 (839)
Q Consensus 469 -~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~------------- 534 (839)
|...+++.+|++|.|.+|.+..+|.++..+++|++|++++|. +..+|.- +..++.++.+..++|
T Consensus 83 vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N~~~~~lg~~~ik~ 160 (1081)
T KOG0618|consen 83 VPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNNEKIQRLGQTSIKK 160 (1081)
T ss_pred CchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcchhhhhhccccchh
Confidence 456667777777777777777777777777777777777654 5555543 334443333333333
Q ss_pred ------ccccccccc--------cccccccchhhhccCCCCCEEEE--------------------EeccccCCCccccc
Q 003203 535 ------SVKWEFEGL--------NIERSNASLQELRHLSQLTTLEI--------------------QIQDAMILPKGLFS 580 (839)
Q Consensus 535 ------~~~~~~~~~--------~~~~~~~~l~~l~~l~~L~~L~l--------------------~~~~~~~~~~~~~~ 580 (839)
.+...+... +..........+..+++|+.+.+ ..|..+........
T Consensus 161 ~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p 240 (1081)
T KOG0618|consen 161 LDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVP 240 (1081)
T ss_pred hhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecccccc
Confidence 111111100 00000000122233333333222 22333222222223
Q ss_pred cccceEEEEEcC---CCCCCCCCCCccEEEecccCCcchHHHHHHhcccceEEeccccCchhhccccccCCCCCCCeeee
Q 003203 581 KKLERYKIYIGD---EWDWSGKSDNTRALKLKLCSSIYLDEILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQV 657 (839)
Q Consensus 581 ~~L~~l~l~~~~---~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l 657 (839)
.+|+.++++.+. ..+|...+.+++.+....+.....+.......+|+.|.+..+. ++.+++. .+.+.+|++|+|
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~--le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE-LEYIPPF--LEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCc--ccccceeeeeee
Confidence 556666665443 1256666666666666655544444444445555555554432 2222221 245788888888
Q ss_pred ccCCCcceeecCC---------------------CcccccccccchhhhhcccccccccccccccccccCCCCEEEEecC
Q 003203 658 QNNPFILCITDST---------------------AWVCFDAFPLLESLVLHNLIHMEKICHSQLTAVSFCNLKIIKVRNC 716 (839)
Q Consensus 658 ~~~~~l~~i~~~~---------------------~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~c 716 (839)
..|. +..+|+.. .......++.|+.|.+.+. .+++-+.. ....+++||.|++++
T Consensus 318 ~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN-~Ltd~c~p--~l~~~~hLKVLhLsy- 392 (1081)
T KOG0618|consen 318 QSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN-HLTDSCFP--VLVNFKHLKVLHLSY- 392 (1081)
T ss_pred hhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC-cccccchh--hhccccceeeeeecc-
Confidence 8763 34443211 0112345677888888773 34443222 255789999999998
Q ss_pred CCcccccchhhhhcCCCccEEEEecccchHHHh
Q 003203 717 DRLKNVFSFSIARGLPQLQTITVIKCKNVEEIF 749 (839)
Q Consensus 717 ~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~ 749 (839)
++|..+|. +.+..++.|++|.+++. +|+.++
T Consensus 393 NrL~~fpa-s~~~kle~LeeL~LSGN-kL~~Lp 423 (1081)
T KOG0618|consen 393 NRLNSFPA-SKLRKLEELEELNLSGN-KLTTLP 423 (1081)
T ss_pred cccccCCH-HHHhchHHhHHHhcccc-hhhhhh
Confidence 56887766 56789999999999985 555554
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=8.9e-18 Score=146.62 Aligned_cols=168 Identities=26% Similarity=0.374 Sum_probs=143.4
Q ss_pred CCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCCCcCC-CcccCC
Q 003203 396 TGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGD-ISIIGN 474 (839)
Q Consensus 396 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~ 474 (839)
+..+|..+++.++..|.+++|+. ..+|+.+ ..+.+|++|++++|+++++|.+++.++.|+.|++.-|.+.. |..||.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl-~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKL-TVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCce-eecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 35667777888888888888874 5677766 78999999999999999999999999999999999998777 788999
Q ss_pred CCCCCEEEccCCCCC--CCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccccccccch
Q 003203 475 LKKLEILSLVDSDIE--RLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASL 552 (839)
Q Consensus 475 l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 552 (839)
++.|+.||+.+|++. .+|..+..++.|+-|.+++|. .+.+|++ ++++++||.|.+..|.+. ..+
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll------------~lp 166 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL------------SLP 166 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh------------hCc
Confidence 999999999999776 788888889999999999976 8888888 899999999999988765 345
Q ss_pred hhhccCCCCCEEEEEeccccCCCcccc
Q 003203 553 QELRHLSQLTTLEIQIQDAMILPKGLF 579 (839)
Q Consensus 553 ~~l~~l~~L~~L~l~~~~~~~~~~~~~ 579 (839)
.+++.+.+|+.|+|.+|..+.+|+.+.
T Consensus 167 keig~lt~lrelhiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGNRLTVLPPELA 193 (264)
T ss_pred HHHHHHHHHHHHhcccceeeecChhhh
Confidence 778889999999999999998887643
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=2.4e-16 Score=137.77 Aligned_cols=157 Identities=25% Similarity=0.339 Sum_probs=141.4
Q ss_pred ccccccccceEEecCCCCCCCCCCC-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCc
Q 003203 379 NNDILKNCSAVFLNDIKTGVLPEGL-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQ 457 (839)
Q Consensus 379 ~~~~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~ 457 (839)
.---+++++++.+++|++..+|..+ ++.+|++|.+++|. +..+|..+ +.+++||.|+++-|++..+|..|+.++-|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhh-hhchhhhheecchhhhhcCccccCCCchhh
Confidence 3334667899999999999998877 99999999998876 58899877 889999999999999999999999999999
Q ss_pred EEEccCCCcCC---CcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCC
Q 003203 458 TLCLDQCVVGD---ISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNT 534 (839)
Q Consensus 458 ~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~ 534 (839)
+|++.+|.+.+ |..|..|..|+-|.+++|.++-+|..++++++||.|.+.+|. +-.+|.+ ++.++.|++|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcccc
Confidence 99999998876 677888899999999999999999999999999999999987 7789988 999999999999999
Q ss_pred ccccc
Q 003203 535 SVKWE 539 (839)
Q Consensus 535 ~~~~~ 539 (839)
.+...
T Consensus 184 rl~vl 188 (264)
T KOG0617|consen 184 RLTVL 188 (264)
T ss_pred eeeec
Confidence 87643
No 17
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.53 E-value=6.3e-13 Score=162.31 Aligned_cols=297 Identities=14% Similarity=0.180 Sum_probs=186.3
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC-CCHHHHHHHHH
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST-ANVKRIQDEIA 108 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~ 108 (839)
||....+++-|...++.+.+ ....+++.|.|++|.||||++.++.++ ++.+.|+++... .++..+...++
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~ 79 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLI 79 (903)
T ss_pred CCCCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHH
Confidence 44555678888877766653 245689999999999999999998853 226899999744 46667777777
Q ss_pred HHhhhhccC--------------CCchHHHHHHHHHHHc-CCcEEEEEeCCCCcc--c-cccccccCCCCCCCceEEEEe
Q 003203 109 DQLCLELCK--------------GTESERARTLFDRLWK-ENKILVILDDICTSI--D-LVTVGIPFGNAHRGCKILLAS 170 (839)
Q Consensus 109 ~~l~~~~~~--------------~~~~~~~~~~~~~l~~-~~~~LlVlDdv~~~~--~-~~~l~~~l~~~~~~s~iivTt 170 (839)
..++..... .........+...+.. +.+++|||||++..+ . .+.+...+....++.++||||
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~s 159 (903)
T PRK04841 80 AALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLS 159 (903)
T ss_pred HHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEe
Confidence 777432111 1112233344445443 689999999997642 1 122322233345677888999
Q ss_pred Cchhhhhh-hc-CccceEEcc----CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHHHHhcCCChh
Q 003203 171 RYRDILVS-EM-HSQYNYCVS----VLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVARALRNKPLS 244 (839)
Q Consensus 171 r~~~~~~~-~~-~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~~~~ 244 (839)
|....... .. ......++. +|+.+|+.++|....|.... .+.+.+|.+.|+|+|+++..++..++.....
T Consensus 160 R~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~ 235 (903)
T PRK04841 160 RNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSS 235 (903)
T ss_pred CCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc
Confidence 98532210 01 112345555 99999999999988765332 3447799999999999999998877544211
Q ss_pred HHHHHHHHhhcccccchHHHHhhh-hccccccchhHHHHHHHhcccCCCCCCCcHHHHHHhhhccccccccccHHHHHHH
Q 003203 245 EWKGALLKLRSSAGKLDALVYSSI-ELSYNYLIDQVLKSAFLLCGLLKHPYDASVMDLLKHGMGLGLFEGIYTMQERRDR 323 (839)
Q Consensus 245 ~w~~~l~~l~~~~~~~~~~~~~~l-~~sy~~L~~~~lk~~fl~~a~fp~~~~~~~~~li~~w~~~g~~~~~~~~~~~~~~ 323 (839)
.......+... ....+...+ .-.++.||++ .+..++..|+++ .++.+ +...-. | ...
T Consensus 236 -~~~~~~~~~~~---~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~---~~~~~-l~~~l~--~-----------~~~ 293 (903)
T PRK04841 236 -LHDSARRLAGI---NASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLR---SMNDA-LIVRVT--G-----------EEN 293 (903)
T ss_pred -hhhhhHhhcCC---CchhHHHHHHHHHHhcCCHH-HHHHHHHhcccc---cCCHH-HHHHHc--C-----------CCc
Confidence 01111111110 011233333 3347899998 699999999987 33332 222111 1 112
Q ss_pred HHHHHHHHHhcccccCC--CCCCeEEeeehHHHHHHHhhc
Q 003203 324 VYALVHILKDSCLLLDG--RTEDWFSMHDIVRNVAISIAS 361 (839)
Q Consensus 324 ~~~~l~~L~~~~ll~~~--~~~~~~~mH~lv~~~~~~~~~ 361 (839)
....++.|.+.+++... +...+|+.|++++++++....
T Consensus 294 ~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 294 GQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred HHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 24568888899986532 234589999999999988763
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=2.4e-13 Score=154.11 Aligned_cols=236 Identities=17% Similarity=0.116 Sum_probs=136.0
Q ss_pred ccccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEcc
Q 003203 383 LKNCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLD 462 (839)
Q Consensus 383 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 462 (839)
..+++.|.+..|.+..+|.. .++|++|++++|.. ..+|. ..++|+.|++++|.+..+|.. ..+|+.|+++
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~L-tsLP~----lp~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls 290 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQL-TSLPV----LPPGLLELSIFSNPLTHLPAL---PSGLCKLWIF 290 (788)
T ss_pred hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCcc-CcccC----cccccceeeccCCchhhhhhc---hhhcCEEECc
Confidence 34677788888887777753 46788888877753 45553 245777788888877777653 2457777788
Q ss_pred CCCcCCCcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcccccccc
Q 003203 463 QCVVGDISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEG 542 (839)
Q Consensus 463 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 542 (839)
+|.+..++. .+++|++|++++|+++.+|.. ..+|+.|++++|. ++.+|. + ..+|+.|++++|.+.. ++
T Consensus 291 ~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~--l--p~~Lq~LdLS~N~Ls~-LP- 358 (788)
T PRK15387 291 GNQLTSLPV--LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ-LTSLPT--L--PSGLQELSVSDNQLAS-LP- 358 (788)
T ss_pred CCccccccc--cccccceeECCCCccccCCCC---cccccccccccCc-cccccc--c--ccccceEecCCCccCC-CC-
Confidence 877776443 246778888888877777653 2356667777765 666664 2 1467778877777642 11
Q ss_pred ccccccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHHHHHH
Q 003203 543 LNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDEILMQ 622 (839)
Q Consensus 543 ~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~ 622 (839)
. ..++|+.|++++|.+..+|... .+|+.|++..+.....+...++|+.|+++.+.....+. .
T Consensus 359 -----------~--lp~~L~~L~Ls~N~L~~LP~l~--~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP~---l 420 (788)
T PRK15387 359 -----------T--LPSELYKLWAYNNRLTSLPALP--SGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPM---L 420 (788)
T ss_pred -----------C--CCcccceehhhccccccCcccc--cccceEEecCCcccCCCCcccCCCEEEccCCcCCCCCc---c
Confidence 0 1235666777777766666432 45666666554433333333455555555544332221 1
Q ss_pred hcccceEEeccccCchhhccccccCCCCCCCeeeeccCC
Q 003203 623 LKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNP 661 (839)
Q Consensus 623 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 661 (839)
+.+|+.|++.++. ++.++.. ...+++|+.|+|++|+
T Consensus 421 ~~~L~~L~Ls~Nq-Lt~LP~s--l~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 421 PSGLLSLSVYRNQ-LTRLPES--LIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhhhccCc-ccccChH--HhhccCCCeEECCCCC
Confidence 2344455554422 2222222 1344555555555554
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=1.1e-13 Score=156.86 Aligned_cols=254 Identities=18% Similarity=0.182 Sum_probs=177.7
Q ss_pred cceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCCC
Q 003203 386 CSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCV 465 (839)
Q Consensus 386 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~ 465 (839)
-..+.++.+.+..+|..+. ++|+.|.+.+|. +..+|. .+++|++|++++|.++.+|.. .++|+.|++++|.
T Consensus 203 ~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~-Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNN-LTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CcEEEcCCCCCCcCCcchh-cCCCEEEccCCc-CCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 3467888888888998663 579999999876 456774 367899999999999988864 4688999999998
Q ss_pred cCCCcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccc
Q 003203 466 VGDISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNI 545 (839)
Q Consensus 466 ~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 545 (839)
+..++. .+.+|+.|++++|+++.+|.. +++|++|++++|. ++.+|.. ..+|+.|++++|.+.. ++
T Consensus 274 L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l----p~~L~~L~Ls~N~L~~-LP---- 338 (788)
T PRK15387 274 LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWAYNNQLTS-LP---- 338 (788)
T ss_pred hhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC----cccccccccccCcccc-cc----
Confidence 887543 246788999999999999873 4789999999985 7777752 2467788888887642 11
Q ss_pred cccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHHHHHHhcc
Q 003203 546 ERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDEILMQLKG 625 (839)
Q Consensus 546 ~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~ 625 (839)
. ...+|+.|++++|.+..+|.. ..+|..|.++.+. ....+ ..+.+
T Consensus 339 --------~--lp~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~--------------------L~~LP---~l~~~ 383 (788)
T PRK15387 339 --------T--LPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNR--------------------LTSLP---ALPSG 383 (788)
T ss_pred --------c--cccccceEecCCCccCCCCCC--Ccccceehhhccc--------------------cccCc---ccccc
Confidence 1 124799999999999888753 2445544443222 11111 11346
Q ss_pred cceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhccccccccccccccccccc
Q 003203 626 IEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICHSQLTAVSF 705 (839)
Q Consensus 626 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~ 705 (839)
|+.|++.++. +..++. ..++|+.|++++|. +..+|. .+.+|+.|++++ +.++.++.. ...+
T Consensus 384 L~~LdLs~N~-Lt~LP~-----l~s~L~~LdLS~N~-LssIP~--------l~~~L~~L~Ls~-NqLt~LP~s---l~~L 444 (788)
T PRK15387 384 LKELIVSGNR-LTSLPV-----LPSELKELMVSGNR-LTSLPM--------LPSGLLSLSVYR-NQLTRLPES---LIHL 444 (788)
T ss_pred cceEEecCCc-ccCCCC-----cccCCCEEEccCCc-CCCCCc--------chhhhhhhhhcc-CcccccChH---Hhhc
Confidence 7788887643 332221 23689999999985 444442 235788899887 446666432 4578
Q ss_pred CCCCEEEEecCC
Q 003203 706 CNLKIIKVRNCD 717 (839)
Q Consensus 706 ~~L~~L~i~~c~ 717 (839)
++|+.|++++++
T Consensus 445 ~~L~~LdLs~N~ 456 (788)
T PRK15387 445 SSETTVNLEGNP 456 (788)
T ss_pred cCCCeEECCCCC
Confidence 899999998865
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=6e-13 Score=152.01 Aligned_cols=243 Identities=19% Similarity=0.248 Sum_probs=126.3
Q ss_pred cceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCCC
Q 003203 386 CSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCV 465 (839)
Q Consensus 386 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~ 465 (839)
...+.+.++++..+|..+ .++|+.|++++|. +..+|..++ .+|++|++++|.++.+|..+. .+|+.|++++|.
T Consensus 180 ~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~-LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 180 KTELRLKILGLTTIPACI-PEQITTLILDNNE-LKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred ceEEEeCCCCcCcCCccc-ccCCcEEEecCCC-CCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 345556655655565543 2356666666654 345555442 356666666666666665442 356666666666
Q ss_pred cCCC-cccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcccccccccc
Q 003203 466 VGDI-SIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLN 544 (839)
Q Consensus 466 ~~~~-~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 544 (839)
+..+ ..+ ..+|++|++++|+++.+|..+. .+|++|++++|. ++.+|.. +. ++|+.|++++|.+... +
T Consensus 253 L~~LP~~l--~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~Ls~N~Lt~L-P--- 320 (754)
T PRK15370 253 ITELPERL--PSALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNVQSNSLTAL-P--- 320 (754)
T ss_pred cCcCChhH--hCCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHhcCCccccC-C---
Confidence 5553 222 2356666666666666665443 356666666654 5555543 22 3566666666654311 1
Q ss_pred ccccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCC-CCCCCccEEEecccCCcchHHHHHHh
Q 003203 545 IERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWS-GKSDNTRALKLKLCSSIYLDEILMQL 623 (839)
Q Consensus 545 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~l~~L~l~~~~~~~~~~~~~~l 623 (839)
..+ .++|+.|++++|.+..+|..+. ++|+.|++..+.....+ ...++|+.|++++|.....+... .
T Consensus 321 --------~~l--~~sL~~L~Ls~N~Lt~LP~~l~-~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP~~l--~ 387 (754)
T PRK15370 321 --------ETL--PPGLKTLEAGENALTSLPASLP-PELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPENL--P 387 (754)
T ss_pred --------ccc--cccceeccccCCccccCChhhc-CcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCCHhH--H
Confidence 001 1456666666666655554332 45555555444322111 11245666666666544443322 2
Q ss_pred cccceEEeccccCchhhccccc--cCCCCCCCeeeeccCC
Q 003203 624 KGIEHLYLDEVPGIKNVLYDLE--REGFPQLKHLQVQNNP 661 (839)
Q Consensus 624 ~~L~~L~l~~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~ 661 (839)
.+|+.|++.++. +..++..+. ...++++..|++.+|+
T Consensus 388 ~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 388 AALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 356777776643 222221110 1334777778887775
No 21
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.40 E-value=9e-12 Score=136.70 Aligned_cols=298 Identities=16% Similarity=0.160 Sum_probs=196.2
Q ss_pred CCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC-CCHHHHHHHHHH
Q 003203 31 NQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST-ANVKRIQDEIAD 109 (839)
Q Consensus 31 ~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~ 109 (839)
|..+.+.|-|...++.+.+ ..+.|++.|..|+|.||||++.++..... .-..+.|++++.. .++..+...++.
T Consensus 15 P~~~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~---~~~~v~Wlslde~dndp~rF~~yLi~ 88 (894)
T COG2909 15 PVRPDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELAA---DGAAVAWLSLDESDNDPARFLSYLIA 88 (894)
T ss_pred CCCcccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcC---cccceeEeecCCccCCHHHHHHHHHH
Confidence 3345567777766554443 34679999999999999999999987332 2356999999765 467788888888
Q ss_pred HhhhhccCC--------------CchHHHHHHHHHHHc-CCcEEEEEeCCCC---ccccccccccCCCCCCCceEEEEeC
Q 003203 110 QLCLELCKG--------------TESERARTLFDRLWK-ENKILVILDDICT---SIDLVTVGIPFGNAHRGCKILLASR 171 (839)
Q Consensus 110 ~l~~~~~~~--------------~~~~~~~~~~~~l~~-~~~~LlVlDdv~~---~~~~~~l~~~l~~~~~~s~iivTtr 171 (839)
.++.-.+.. +.......++..+.. .++..+||||..- +.--..+...+....++...|||||
T Consensus 89 al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR 168 (894)
T COG2909 89 ALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSR 168 (894)
T ss_pred HHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEec
Confidence 776432221 222334455555542 4789999999763 2222333444455668899999999
Q ss_pred chhhhhhh-cC-ccceEEcc----CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHHHHhcCC-Chh
Q 003203 172 YRDILVSE-MH-SQYNYCVS----VLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVARALRNK-PLS 244 (839)
Q Consensus 172 ~~~~~~~~-~~-~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~-~~~ 244 (839)
........ +. .+...++. .|+.+|+.++|....+..-+.. ..+.+.+..+|.+-|+..++=.+++. +.+
T Consensus 169 ~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~----~~~~L~~~teGW~~al~L~aLa~~~~~~~~ 244 (894)
T COG2909 169 SRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAA----DLKALYDRTEGWAAALQLIALALRNNTSAE 244 (894)
T ss_pred cCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChH----HHHHHHhhcccHHHHHHHHHHHccCCCcHH
Confidence 88643211 11 12233333 4899999999999886544433 37789999999999999999999844 333
Q ss_pred HHHHHHHHhhcccccchHHHH-hhhhccccccchhHHHHHHHhcccCCCCCCCcHHHHHHhhhccccccccccHHHHHHH
Q 003203 245 EWKGALLKLRSSAGKLDALVY-SSIELSYNYLIDQVLKSAFLLCGLLKHPYDASVMDLLKHGMGLGLFEGIYTMQERRDR 323 (839)
Q Consensus 245 ~w~~~l~~l~~~~~~~~~~~~-~~l~~sy~~L~~~~lk~~fl~~a~fp~~~~~~~~~li~~w~~~g~~~~~~~~~~~~~~ 323 (839)
.-...+.. ....+. -...--++.||++ +|..++-+|+++. + -.+|+..-. .++.
T Consensus 245 q~~~~LsG-------~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~-f---~~eL~~~Lt-------------g~~n 299 (894)
T COG2909 245 QSLRGLSG-------AASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSR-F---NDELCNALT-------------GEEN 299 (894)
T ss_pred HHhhhccc-------hHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHH-h---hHHHHHHHh-------------cCCc
Confidence 22211111 111111 1234557889999 7999999999883 1 123333221 2334
Q ss_pred HHHHHHHHHhcccccC--CCCCCeEEeeehHHHHHHHhhccC
Q 003203 324 VYALVHILKDSCLLLD--GRTEDWFSMHDIVRNVAISIASRD 363 (839)
Q Consensus 324 ~~~~l~~L~~~~ll~~--~~~~~~~~mH~lv~~~~~~~~~~e 363 (839)
+...+++|.+++++.. +++..+|+.|.++.+|.+...+.+
T Consensus 300 g~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 300 GQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred HHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 5567899999999873 357789999999999998887653
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.38 E-value=2.2e-12 Score=147.54 Aligned_cols=224 Identities=18% Similarity=0.280 Sum_probs=164.5
Q ss_pred cccccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEc
Q 003203 382 ILKNCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCL 461 (839)
Q Consensus 382 ~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l 461 (839)
++..++.+.+++|++..+|..+. ++|++|++++|. +..+|..+ ..+|+.|+|++|.+..+|..+. .+|++|++
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~-LtsLP~~l---~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQ-LTSIPATL---PDTIQEMELSINRITELPERLP--SALQSLDL 269 (754)
T ss_pred cccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCc-cccCChhh---hccccEEECcCCccCcCChhHh--CCCCEEEC
Confidence 45678999999999999987653 689999999887 46777755 3479999999999999988764 58999999
Q ss_pred cCCCcCCC-cccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcccccc
Q 003203 462 DQCVVGDI-SIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEF 540 (839)
Q Consensus 462 ~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 540 (839)
++|.+..+ ..+. .+|++|++++|+++.+|..+. ++|++|++++|. ++.+|.. + .++|+.|++++|.+.. +
T Consensus 270 s~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~-l--~~sL~~L~Ls~N~Lt~-L 340 (754)
T PRK15370 270 FHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPET-L--PPGLKTLEAGENALTS-L 340 (754)
T ss_pred cCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCcc-c--cccceeccccCCcccc-C
Confidence 99988874 3332 589999999999998887654 478899999876 7777764 2 3688899998887652 1
Q ss_pred ccccccccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCCCCC-CCccEEEecccCCcchHH-
Q 003203 541 EGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKS-DNTRALKLKLCSSIYLDE- 618 (839)
Q Consensus 541 ~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-~~l~~L~l~~~~~~~~~~- 618 (839)
+ ..+ .++|+.|++++|.+..+|..+ ..+|+.|++..+....++..+ ..|+.|+++++.....+.
T Consensus 341 P-----------~~l--~~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~Lt~LP~~l~~sL~~LdLs~N~L~~LP~s 406 (754)
T PRK15370 341 P-----------ASL--PPELQVLDVSKNQITVLPETL-PPTITTLDVSRNALTNLPENLPAALQIMQASRNNLVRLPES 406 (754)
T ss_pred C-----------hhh--cCcccEEECCCCCCCcCChhh-cCCcCEEECCCCcCCCCCHhHHHHHHHHhhccCCcccCchh
Confidence 1 112 268889999998888777654 367888888776544443322 357777887766555443
Q ss_pred ---HHHHhcccceEEecccc
Q 003203 619 ---ILMQLKGIEHLYLDEVP 635 (839)
Q Consensus 619 ---~~~~l~~L~~L~l~~~~ 635 (839)
....++++..|++.+.+
T Consensus 407 l~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 407 LPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHhhcCCCccEEEeeCCC
Confidence 22334677888887644
No 23
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.38 E-value=1e-10 Score=120.76 Aligned_cols=183 Identities=16% Similarity=0.149 Sum_probs=115.6
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHH---
Q 003203 53 SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFD--- 129 (839)
Q Consensus 53 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~--- 129 (839)
+....+++|+|++|+||||+++.+++...... . .++|+ +....+..+++..|+..++..............+.+
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 34446899999999999999999998875321 1 12333 233456778888999888765443333333333322
Q ss_pred -HHHcCCcEEEEEeCCCCcc--ccccccccCC---CCCCCceEEEEeCchhhhh--------hhcCccceEEccCCCHHH
Q 003203 130 -RLWKENKILVILDDICTSI--DLVTVGIPFG---NAHRGCKILLASRYRDILV--------SEMHSQYNYCVSVLNKEE 195 (839)
Q Consensus 130 -~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~---~~~~~s~iivTtr~~~~~~--------~~~~~~~~~~l~~L~~~e 195 (839)
....+++.++|+||++... .++.+..... .......|++|........ ........+++++++.+|
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2335788999999998753 3333322111 1122334566655432111 001123468899999999
Q ss_pred HHHHHHHHhC---CCCCCcchHHHHHHHHHHhCCchhHHHHHHHHh
Q 003203 196 AWSLFKKMVG---DYVEDSDLESIAIQVANECGGLPLAIVIVARAL 238 (839)
Q Consensus 196 a~~Lf~~~~~---~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L 238 (839)
..+++...+. ......-.++..+.|++.++|.|..|+.++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999988873 211222335678999999999999999988776
No 24
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.34 E-value=1.5e-10 Score=126.47 Aligned_cols=290 Identities=16% Similarity=0.091 Sum_probs=168.5
Q ss_pred CCccccchHHHHHHHHHHhc----CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHH
Q 003203 33 GYKSFESRKSILCDILDWLT----SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIA 108 (839)
Q Consensus 33 ~~~~fvgR~~~~~~l~~~l~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 108 (839)
.+..|+||++++++|...+. ....+.+.|+|++|+|||++++.++++.......-.++++++....+...++.+|+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 44679999999999999984 23446788999999999999999999987654233467777777778888999999
Q ss_pred HHhhhhccC---CCchHHHHHHHHHHHc-CCcEEEEEeCCCCcc------ccccccccCCCC-CCCceEEEEeCchhhhh
Q 003203 109 DQLCLELCK---GTESERARTLFDRLWK-ENKILVILDDICTSI------DLVTVGIPFGNA-HRGCKILLASRYRDILV 177 (839)
Q Consensus 109 ~~l~~~~~~---~~~~~~~~~~~~~l~~-~~~~LlVlDdv~~~~------~~~~l~~~l~~~-~~~s~iivTtr~~~~~~ 177 (839)
+++.....+ .+..+....+.+.+.. +++.+||+|+++... .+..+...+... +.+..+|.+++...+..
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLY 187 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhh
Confidence 988652111 1233444555555543 456899999998642 122222221111 11233666666554322
Q ss_pred h------hcCccceEEccCCCHHHHHHHHHHHhCCCC-CCcchHHHHHHHHHHh----CCchhHHHHHHHHh-----cCC
Q 003203 178 S------EMHSQYNYCVSVLNKEEAWSLFKKMVGDYV-EDSDLESIAIQVANEC----GGLPLAIVIVARAL-----RNK 241 (839)
Q Consensus 178 ~------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~-~~~~~~~~~~~I~~~~----~G~Plai~~~~~~L-----~~~ 241 (839)
. .......+.+++++.++..+++..++.... ...-.++..+.|++.+ |..+.|+.++-... ++.
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~ 267 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGS 267 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 0 011135689999999999999998873211 1111133344455544 44677766654322 111
Q ss_pred ---ChhHHHHHHHHhhcccccchHHHHhhhhccccccchhHHHHHHHhcccCCC--CCCCcHHHHHHhh--hc--ccccc
Q 003203 242 ---PLSEWKGALLKLRSSAGKLDALVYSSIELSYNYLIDQVLKSAFLLCGLLKH--PYDASVMDLLKHG--MG--LGLFE 312 (839)
Q Consensus 242 ---~~~~w~~~l~~l~~~~~~~~~~~~~~l~~sy~~L~~~~lk~~fl~~a~fp~--~~~~~~~~li~~w--~~--~g~~~ 312 (839)
+.+.+..+.+... .....-.+..||.++ |..+..++...+ ...+...++.... ++ .|.-
T Consensus 268 ~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~-k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~- 335 (394)
T PRK00411 268 RKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHE-KLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE- 335 (394)
T ss_pred CCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHH-HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC-
Confidence 4455555555441 113345678899873 433333332211 1234444443221 11 1110
Q ss_pred ccccHHHHHHHHHHHHHHHHhcccccC
Q 003203 313 GIYTMQERRDRVYALVHILKDSCLLLD 339 (839)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~L~~~~ll~~ 339 (839)
.-....+.++++.|.+.+++..
T Consensus 336 -----~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 336 -----PRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred -----cCcHHHHHHHHHHHHhcCCeEE
Confidence 0123556778999999999864
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.33 E-value=7.1e-13 Score=153.82 Aligned_cols=228 Identities=18% Similarity=0.225 Sum_probs=148.4
Q ss_pred ccceEEecCCC--CCCCCCC--CCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEE
Q 003203 385 NCSAVFLNDIK--TGVLPEG--LEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLC 460 (839)
Q Consensus 385 ~~~~l~l~~~~--~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~ 460 (839)
+++.+-+..+. ...++.. ..++.||+|++++|.....+|..+ +++-+||+|+++++.+..+|.++++|+.|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHhhheec
Confidence 68888888886 5666663 379999999999999999999987 899999999999999999999999999999999
Q ss_pred ccCCCc-CCC-cccCCCCCCCEEEccCCCCCC---CchhhcCCCccCeEecCCCcCCCccCchhhcCccccCe----EEc
Q 003203 461 LDQCVV-GDI-SIIGNLKKLEILSLVDSDIER---LPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEE----LYM 531 (839)
Q Consensus 461 l~~~~~-~~~-~~~~~l~~L~~L~l~~~~l~~---lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~----L~l 531 (839)
+..+.. ..+ .....|++||+|.+....... .-..+.+|.+|+.+.+..+.. .+-.. +..++.|.. +.+
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~-l~~~~~L~~~~~~l~~ 701 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLED-LLGMTRLRSLLQSLSI 701 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhh-hhhhHHHHHHhHhhhh
Confidence 998853 334 445559999999998765321 123345555555555544321 11111 333444432 222
Q ss_pred cCCccccccccccccccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEeccc
Q 003203 532 GNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLC 611 (839)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~ 611 (839)
.++. .......+..+.+|+.|.+.++.+........ .....+
T Consensus 702 ~~~~------------~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~------------------~~~~~~-------- 743 (889)
T KOG4658|consen 702 EGCS------------KRTLISSLGSLGNLEELSILDCGISEIVIEWE------------------ESLIVL-------- 743 (889)
T ss_pred cccc------------cceeecccccccCcceEEEEcCCCchhhcccc------------------cccchh--------
Confidence 2211 12334556777788888888776654332100 000000
Q ss_pred CCcchHHHHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCccee
Q 003203 612 SSIYLDEILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCI 666 (839)
Q Consensus 612 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i 666 (839)
..++++..+.+.+|...++..+.. -.|+|+.|.+.+|+.++.+
T Consensus 744 ---------~~f~~l~~~~~~~~~~~r~l~~~~---f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 744 ---------LCFPNLSKVSILNCHMLRDLTWLL---FAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred ---------hhHHHHHHHHhhccccccccchhh---ccCcccEEEEecccccccC
Confidence 024556666666676666655432 2478888888888766544
No 26
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.32 E-value=5.1e-12 Score=127.78 Aligned_cols=194 Identities=18% Similarity=0.266 Sum_probs=107.2
Q ss_pred ccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHH----------
Q 003203 37 FESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDE---------- 106 (839)
Q Consensus 37 fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~---------- 106 (839)
|+||++|+++|.+++..+..+.+.|+|+.|+|||+|++++.+..+..+ + .++|+....... ......
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~-~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESN-ESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSH-HHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchh-hhHHHHHHHHHHHHHH
Confidence 899999999999999877678999999999999999999999884321 1 334443333322 212222
Q ss_pred HHHHhhhhccC-----------CCchHHHHHHHHHHHc-CCcEEEEEeCCCCcc-ccc-------cccccCCC--CCCCc
Q 003203 107 IADQLCLELCK-----------GTESERARTLFDRLWK-ENKILVILDDICTSI-DLV-------TVGIPFGN--AHRGC 164 (839)
Q Consensus 107 i~~~l~~~~~~-----------~~~~~~~~~~~~~l~~-~~~~LlVlDdv~~~~-~~~-------~l~~~l~~--~~~~s 164 (839)
+...+...... .........+.+.+.+ +++++||+||++... ... .+...+.. .....
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 22223222111 1223445556666653 356999999997665 111 11111111 23344
Q ss_pred eEEEEeCchhhhhh-------hcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHH
Q 003203 165 KILLASRYRDILVS-------EMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVI 233 (839)
Q Consensus 165 ~iivTtr~~~~~~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 233 (839)
.+|+++........ .......+.+++|+.+++++++...+.+...-+..++..++|++.+||+|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 45555554443321 1222345999999999999999998744311112245578999999999998865
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.29 E-value=7.7e-10 Score=119.69 Aligned_cols=292 Identities=16% Similarity=0.125 Sum_probs=167.4
Q ss_pred CccccchHHHHHHHHHHhc----CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhcc-C---CeEEEEEEecCCCHHHHHH
Q 003203 34 YKSFESRKSILCDILDWLT----SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNL-F---DQVIFVLASSTANVKRIQD 105 (839)
Q Consensus 34 ~~~fvgR~~~~~~l~~~l~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-f---~~~~wv~~~~~~~~~~~~~ 105 (839)
++.|+||++++++|..++. ....+.+.|+|++|+|||++++.++++...... . -..+|+++....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 4579999999999999986 234468999999999999999999998753211 1 1367788777777888999
Q ss_pred HHHHHhh---hhccC--CCchHHHHHHHHHHH-cCCcEEEEEeCCCCcc-c----cccccccC--CC-CCCCceEEEEeC
Q 003203 106 EIADQLC---LELCK--GTESERARTLFDRLW-KENKILVILDDICTSI-D----LVTVGIPF--GN-AHRGCKILLASR 171 (839)
Q Consensus 106 ~i~~~l~---~~~~~--~~~~~~~~~~~~~l~-~~~~~LlVlDdv~~~~-~----~~~l~~~l--~~-~~~~s~iivTtr 171 (839)
.|++++. ...+. .+..+....+.+.+. .+++++||||+++... . +..+.... .. .+....+|++|+
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 9999884 22211 122334455555554 3567899999998662 1 11221110 11 112344555665
Q ss_pred chhhhhh---h---cCccceEEccCCCHHHHHHHHHHHhCC----CCCCcchHHHHHHHHHHhCCchhHH-HHHHHHh--
Q 003203 172 YRDILVS---E---MHSQYNYCVSVLNKEEAWSLFKKMVGD----YVEDSDLESIAIQVANECGGLPLAI-VIVARAL-- 238 (839)
Q Consensus 172 ~~~~~~~---~---~~~~~~~~l~~L~~~ea~~Lf~~~~~~----~~~~~~~~~~~~~I~~~~~G~Plai-~~~~~~L-- 238 (839)
....... . .-....+.+++++.+|..+++..++.. ....++.-+.+.+++....|.|-.+ .++-...
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4432110 0 011256899999999999999988731 1122333334556777777888543 3221111
Q ss_pred --c-CC---ChhHHHHHHHHhhcccccchHHHHhhhhccccccchhHHHHHHHhcccCC--CCCCCcHHHHHHhhh--cc
Q 003203 239 --R-NK---PLSEWKGALLKLRSSAGKLDALVYSSIELSYNYLIDQVLKSAFLLCGLLK--HPYDASVMDLLKHGM--GL 308 (839)
Q Consensus 239 --~-~~---~~~~w~~~l~~l~~~~~~~~~~~~~~l~~sy~~L~~~~lk~~fl~~a~fp--~~~~~~~~~li~~w~--~~ 308 (839)
. +. +.+..+.+.+... .....-+...||.++ +..+..++..- ++..+...++...+. ++
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~~~-~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~ 322 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPTHS-KLVLLAIANLAANDEDPFRTGEVYEVYKEVCE 322 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCHHH-HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 1 11 4444554444431 112344566788773 44443333111 223445555544221 11
Q ss_pred ccccccccHHHHHHHHHHHHHHHHhcccccCC
Q 003203 309 GLFEGIYTMQERRDRVYALVHILKDSCLLLDG 340 (839)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 340 (839)
.+ + ...-....+.++++.|...|++...
T Consensus 323 ~~--~--~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 323 DI--G--VDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred hc--C--CCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 11 0 0012346677888999999998753
No 28
>PF05729 NACHT: NACHT domain
Probab=99.23 E-value=1e-10 Score=111.15 Aligned_cols=144 Identities=18% Similarity=0.246 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccC----CeEEEEEEecCCCHH---HHHHHHHHHhhhhccCCCchHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLF----DQVIFVLASSTANVK---RIQDEIADQLCLELCKGTESERARTLFD 129 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f----~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 129 (839)
|++.|.|.+|+||||++++++.+....... ..++|+..+...... .+...|..+...... ........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-----~~~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA-----PIEELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh-----hhHHHHHH
Confidence 589999999999999999999998876543 346666666544332 333333333321111 11112222
Q ss_pred HHHcCCcEEEEEeCCCCccc---------ccccc-ccCCC-CCCCceEEEEeCchhh--hhhhcCccceEEccCCCHHHH
Q 003203 130 RLWKENKILVILDDICTSID---------LVTVG-IPFGN-AHRGCKILLASRYRDI--LVSEMHSQYNYCVSVLNKEEA 196 (839)
Q Consensus 130 ~l~~~~~~LlVlDdv~~~~~---------~~~l~-~~l~~-~~~~s~iivTtr~~~~--~~~~~~~~~~~~l~~L~~~ea 196 (839)
.....++++||+|+++.... +..+. ..+.. ..++.+++||+|.... ..........+++.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 33357999999999986532 11122 12222 3578999999998876 332334456899999999999
Q ss_pred HHHHHHHhC
Q 003203 197 WSLFKKMVG 205 (839)
Q Consensus 197 ~~Lf~~~~~ 205 (839)
.+++++++.
T Consensus 156 ~~~~~~~f~ 164 (166)
T PF05729_consen 156 KQYLRKYFS 164 (166)
T ss_pred HHHHHHHhh
Confidence 999998763
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.17 E-value=1.5e-12 Score=129.51 Aligned_cols=259 Identities=19% Similarity=0.246 Sum_probs=135.3
Q ss_pred ccccccceEEecCCCCCCCCCCC--CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCC-CcccccCc-cccCCCCC
Q 003203 381 DILKNCSAVFLNDIKTGVLPEGL--EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSE-MQLLSLPP-SVHLLSNL 456 (839)
Q Consensus 381 ~~~~~~~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp~-~~~~l~~L 456 (839)
+.+.....|.+..|.+..+|+.. .+++||.|+++.|.. ..+.++.|.++++|-.|-+.+ |+|+++|. .|++|..|
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~I-s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNI-SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccch-hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 44555666777777777666654 666677777766653 455555666666666655555 66666665 45666666
Q ss_pred cEEEccCCCcCCC--cccCCCCCCCEEEccCCCCCCCch-hhcCCCccCeEecCCCcCC------------CccCchhhc
Q 003203 457 QTLCLDQCVVGDI--SIIGNLKKLEILSLVDSDIERLPN-EIGQLTQLRCLDLSFCRNL------------KVIPPNVIS 521 (839)
Q Consensus 457 ~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l------------~~~p~~~l~ 521 (839)
+-|.+..|.+.-+ ..+..|++|..|.+.+|.+..++. .+..+..++++.+..|..+ ...|.+ ++
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie-ts 221 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE-TS 221 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh-cc
Confidence 6666666665552 556666667777777766666665 4566666666666554411 111111 22
Q ss_pred CccccCeEEccCCccccccc---------------cccccccccchhhhccCCCCCEEEEEeccccCCCccccccccceE
Q 003203 522 KLTQLEELYMGNTSVKWEFE---------------GLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERY 586 (839)
Q Consensus 522 ~l~~L~~L~l~~~~~~~~~~---------------~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l 586 (839)
......-..+.+..+..... +........-..-++.+++|++|++++|.++.+.+..|.
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe------ 295 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE------ 295 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc------
Confidence 22222111111111100000 000000111123467788888888888887776655432
Q ss_pred EEEEcCCCCCCCCCCCccEEEecccCCcchHH-HHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCC
Q 003203 587 KIYIGDEWDWSGKSDNTRALKLKLCSSIYLDE-ILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNP 661 (839)
Q Consensus 587 ~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 661 (839)
....++.|.|..+....... .+..+.+|+.|+|.+.+-. .+.+. ....+.+|.+|.+-.|+
T Consensus 296 ------------~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it-~~~~~-aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 296 ------------GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT-TVAPG-AFQTLFSLSTLNLLSNP 357 (498)
T ss_pred ------------chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE-EEecc-cccccceeeeeehccCc
Confidence 33444445554433333222 5555666677776663322 22211 11334556666666554
No 30
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.14 E-value=4.1e-09 Score=110.79 Aligned_cols=272 Identities=11% Similarity=0.061 Sum_probs=145.7
Q ss_pred CccccchHHHHHHHHHHhc-----CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHH
Q 003203 34 YKSFESRKSILCDILDWLT-----SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIA 108 (839)
Q Consensus 34 ~~~fvgR~~~~~~l~~~l~-----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 108 (839)
..+|+|++..+++|..++. ....+.+.|+|++|+|||+||+.+++..... + ..+..........+ ...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~l-~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGDL-AAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchhH-HHHH
Confidence 4579999999999999886 2345678899999999999999999887532 2 12221111112222 2222
Q ss_pred HHhhhhc----c--CCCchHHHHHHHHHHHcCCcEEEEEeCCCCccccccccccCCCCCCCceEEEEeCchhhhhhh-cC
Q 003203 109 DQLCLEL----C--KGTESERARTLFDRLWKENKILVILDDICTSIDLVTVGIPFGNAHRGCKILLASRYRDILVSE-MH 181 (839)
Q Consensus 109 ~~l~~~~----~--~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~~~~~~-~~ 181 (839)
..++... + +.-.......++..+ .+.+..+|+|+..+..++.. . ..+..-|..||+...+.... ..
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~-~~~~~~~v~~~~~~~~~~~~---~---~~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAM-EDFRLDIVIGKGPSARSVRL---D---LPPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHH-hhhheeeeeccCccccceee---c---CCCeEEEEecCCccccCHHHHhh
Confidence 2222110 0 000011112222222 34555666666555443321 1 12344555666654433211 11
Q ss_pred ccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHHHHhcCCChhHHHHHHHHh-hcccccc
Q 003203 182 SQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVARALRNKPLSEWKGALLKL-RSSAGKL 260 (839)
Q Consensus 182 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~~~~~w~~~l~~l-~~~~~~~ 260 (839)
....+++++++.++..+++.+.++..... -.++....|++.|+|.|-.+..++..+. ......- .....+.
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~~-~~~~al~~ia~~~~G~pR~~~~ll~~~~-------~~a~~~~~~~it~~~ 221 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNVE-IEPEAALEIARRSRGTPRIANRLLRRVR-------DFAQVRGQKIINRDI 221 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCCC-cCHHHHHHHHHHhCCCcchHHHHHHHHH-------HHHHHcCCCCcCHHH
Confidence 23568999999999999999988543222 2245678999999999976655544321 1000000 0000001
Q ss_pred hHHHHhhhhccccccchhHHHHHHH-hcccCCCCCCCcHHHHHHhhhccccccccccHHHHHHHHHHHHH-HHHhccccc
Q 003203 261 DALVYSSIELSYNYLIDQVLKSAFL-LCGLLKHPYDASVMDLLKHGMGLGLFEGIYTMQERRDRVYALVH-ILKDSCLLL 338 (839)
Q Consensus 261 ~~~~~~~l~~sy~~L~~~~lk~~fl-~~a~fp~~~~~~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~l~-~L~~~~ll~ 338 (839)
-......+...|..++..+ +..+. ..+.+.. ..+...++.... |. ........++ .|++++++.
T Consensus 222 v~~~l~~l~~~~~~l~~~~-~~~L~al~~~~~~-~~~~~~~ia~~l---g~---------~~~~~~~~~e~~Li~~~li~ 287 (305)
T TIGR00635 222 ALKALEMLMIDELGLDEID-RKLLSVLIEQFQG-GPVGLKTLAAAL---GE---------DADTIEDVYEPYLLQIGFLQ 287 (305)
T ss_pred HHHHHHHhCCCCCCCCHHH-HHHHHHHHHHhCC-CcccHHHHHHHh---CC---------CcchHHHhhhHHHHHcCCcc
Confidence 1112223566788888875 55444 4555653 345554443322 11 1223445567 599999997
Q ss_pred CC
Q 003203 339 DG 340 (839)
Q Consensus 339 ~~ 340 (839)
..
T Consensus 288 ~~ 289 (305)
T TIGR00635 288 RT 289 (305)
T ss_pred cC
Confidence 44
No 31
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.13 E-value=2.5e-09 Score=112.93 Aligned_cols=278 Identities=11% Similarity=0.031 Sum_probs=147.5
Q ss_pred CCCCCccccchHHHHHHHHHHhc-----CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHH
Q 003203 30 SNQGYKSFESRKSILCDILDWLT-----SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQ 104 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~-----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 104 (839)
.|....+|+||++.++.+..++. ....+.+.|+|++|+|||++|+.+++..... + .++.... ......+
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l 93 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDL 93 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHH
Confidence 45677889999999999988775 2334678999999999999999999987532 1 1222111 1111222
Q ss_pred HHHHHHhhhhcc-CCCc----hHHHHHHHHHHHcCCcEEEEEeCCCCccccccccccCCCCCCCceEEEEeCchhhhhhh
Q 003203 105 DEIADQLCLELC-KGTE----SERARTLFDRLWKENKILVILDDICTSIDLVTVGIPFGNAHRGCKILLASRYRDILVSE 179 (839)
Q Consensus 105 ~~i~~~l~~~~~-~~~~----~~~~~~~~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~~~~~~ 179 (839)
..++..+..... -.++ .......+.....+.+..+|+|+..+...+.. .+ .+.+-|..|++...+....
T Consensus 94 ~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l---~~~~li~at~~~~~l~~~L 167 (328)
T PRK00080 94 AAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DL---PPFTLIGATTRAGLLTSPL 167 (328)
T ss_pred HHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceee---cC---CCceEEeecCCcccCCHHH
Confidence 233332221100 0000 00111111112223445555555444332211 11 1234455566644332211
Q ss_pred -cCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHHHHhcCCChhHHHHHHHHhhcccc
Q 003203 180 -MHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVARALRNKPLSEWKGALLKLRSSAG 258 (839)
Q Consensus 180 -~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~~~~~w~~~l~~l~~~~~ 258 (839)
......+++++++.++..+++.+.++..... -.++....|++.|+|.|-.+..+...+. .|..... -.....
T Consensus 168 ~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~-~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~~-~~~I~~ 240 (328)
T PRK00080 168 RDRFGIVQRLEFYTVEELEKIVKRSARILGVE-IDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVKG-DGVITK 240 (328)
T ss_pred HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHcC-CCCCCH
Confidence 1123568999999999999999988543322 2345688999999999965554444321 1111000 000000
Q ss_pred cchHHHHhhhhccccccchhHHHHHHH-hcccCCCCCCCcHHHHHHhhhccccccccccHHHHHHHHHHHHH-HHHhccc
Q 003203 259 KLDALVYSSIELSYNYLIDQVLKSAFL-LCGLLKHPYDASVMDLLKHGMGLGLFEGIYTMQERRDRVYALVH-ILKDSCL 336 (839)
Q Consensus 259 ~~~~~~~~~l~~sy~~L~~~~lk~~fl-~~a~fp~~~~~~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~l~-~L~~~~l 336 (839)
..-......+...+..|++.+ +..+. ....|..+ .+..+.+.... + . .....++.++ .|++.++
T Consensus 241 ~~v~~~l~~~~~~~~~l~~~~-~~~l~~~~~~~~~~-~~~~~~~a~~l-g--~---------~~~~~~~~~e~~Li~~~l 306 (328)
T PRK00080 241 EIADKALDMLGVDELGLDEMD-RKYLRTIIEKFGGG-PVGLDTLAAAL-G--E---------ERDTIEDVYEPYLIQQGF 306 (328)
T ss_pred HHHHHHHHHhCCCcCCCCHHH-HHHHHHHHHHcCCC-ceeHHHHHHHH-C--C---------CcchHHHHhhHHHHHcCC
Confidence 111123345677788888874 66554 56666643 45555443322 1 1 1223334556 7888999
Q ss_pred ccCC
Q 003203 337 LLDG 340 (839)
Q Consensus 337 l~~~ 340 (839)
++..
T Consensus 307 i~~~ 310 (328)
T PRK00080 307 IQRT 310 (328)
T ss_pred cccC
Confidence 8654
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.12 E-value=2.7e-12 Score=127.68 Aligned_cols=140 Identities=21% Similarity=0.312 Sum_probs=113.7
Q ss_pred CCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccccc-CccccCCCCCcEEEccC-CCcCCC--
Q 003203 394 IKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSL-PPSVHLLSNLQTLCLDQ-CVVGDI-- 469 (839)
Q Consensus 394 ~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~-~~~~~~-- 469 (839)
....++|..+. +....+.+..|. +..+|+..|+.+++||.|||+.|.|+.+ |..|..++.|-.|.+.+ |.|+++
T Consensus 56 ~GL~eVP~~LP-~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 56 KGLTEVPANLP-PETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CCcccCcccCC-CcceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 34456665432 245667787776 5899999999999999999999999977 88899999988888777 789885
Q ss_pred cccCCCCCCCEEEccCCCCCCCc-hhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcc
Q 003203 470 SIIGNLKKLEILSLVDSDIERLP-NEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSV 536 (839)
Q Consensus 470 ~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~ 536 (839)
..|++|..|+.|.+.-|++..++ ..+..|++|..|.+.+|. +..++...+..+.+++.+.+..|.+
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCcc
Confidence 67999999999999999888664 457889999999999875 7888886688899999998877663
No 33
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.10 E-value=3.1e-09 Score=124.45 Aligned_cols=308 Identities=15% Similarity=0.130 Sum_probs=176.5
Q ss_pred cccchHHHHHHHHHHhc---CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHh-ccCCeEEEEEEecCCCH---HHHHHHHH
Q 003203 36 SFESRKSILCDILDWLT---SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQ-NLFDQVIFVLASSTANV---KRIQDEIA 108 (839)
Q Consensus 36 ~fvgR~~~~~~l~~~l~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~~---~~~~~~i~ 108 (839)
.++||+.+++.|.+.+. .+...++.+.|.+|||||+++++|......+ ..|-...+-........ .+..+++.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 37899999999999987 5667899999999999999999999987754 11111111111122111 12222222
Q ss_pred HHh-------------------hhhccC-----------------------CCchHHH-----HHHHHHHHcCCcEEEEE
Q 003203 109 DQL-------------------CLELCK-----------------------GTESERA-----RTLFDRLWKENKILVIL 141 (839)
Q Consensus 109 ~~l-------------------~~~~~~-----------------------~~~~~~~-----~~~~~~l~~~~~~LlVl 141 (839)
.++ +..... ....... ..+.....+.|+.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 222 211000 0000111 11122222467999999
Q ss_pred eCCC-Cc-ccccc---ccccCC---CCCCCceEEEEeCchh-hhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcc
Q 003203 142 DDIC-TS-IDLVT---VGIPFG---NAHRGCKILLASRYRD-ILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSD 212 (839)
Q Consensus 142 Ddv~-~~-~~~~~---l~~~l~---~~~~~s~iivTtr~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 212 (839)
||+. -+ ..++- ++.... ...+..-.+.|.+... ...........+.+.||+..+...+.....+......
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~~- 239 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLLP- 239 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccccc-
Confidence 9994 22 22221 111111 0001111222333221 1111233457899999999999999999997643322
Q ss_pred hHHHHHHHHHHhCCchhHHHHHHHHhcCC-------ChhHHHHHHHHhhcccccchHHHHhhhhccccccchhHHHHHHH
Q 003203 213 LESIAIQVANECGGLPLAIVIVARALRNK-------PLSEWKGALLKLRSSAGKLDALVYSSIELSYNYLIDQVLKSAFL 285 (839)
Q Consensus 213 ~~~~~~~I~~~~~G~Plai~~~~~~L~~~-------~~~~w~~~l~~l~~~~~~~~~~~~~~l~~sy~~L~~~~lk~~fl 285 (839)
.+..+.|+++..|+|+.+..+-..+... +...|..-..++.. ....+.+...+..-.+.||.. .++...
T Consensus 240 -~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~--~~~~~~vv~~l~~rl~kL~~~-t~~Vl~ 315 (849)
T COG3899 240 -APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI--LATTDAVVEFLAARLQKLPGT-TREVLK 315 (849)
T ss_pred -chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC--chhhHHHHHHHHHHHhcCCHH-HHHHHH
Confidence 4457899999999999999999988764 33445433333211 111222555688888999998 599999
Q ss_pred hcccCCCCCCCcHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHhcccccCC-----C-CCCeE---EeeehHHHHH
Q 003203 286 LCGLLKHPYDASVMDLLKHGMGLGLFEGIYTMQERRDRVYALVHILKDSCLLLDG-----R-TEDWF---SMHDIVRNVA 356 (839)
Q Consensus 286 ~~a~fp~~~~~~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~-----~-~~~~~---~mH~lv~~~~ 356 (839)
..|++. ..|+.+.|...+-. .....+.++++.|....++... . ..... ..|+.+++.+
T Consensus 316 ~AA~iG--~~F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaa 382 (849)
T COG3899 316 AAACIG--NRFDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAA 382 (849)
T ss_pred HHHHhC--ccCCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHH
Confidence 999999 66666666554421 1233444555555555554321 1 11111 4588888877
Q ss_pred HHhhc
Q 003203 357 ISIAS 361 (839)
Q Consensus 357 ~~~~~ 361 (839)
.....
T Consensus 383 Y~~i~ 387 (849)
T COG3899 383 YNLIP 387 (849)
T ss_pred hccCc
Confidence 66553
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=2.4e-11 Score=116.42 Aligned_cols=135 Identities=19% Similarity=0.232 Sum_probs=119.0
Q ss_pred CCCccEEEeCCCcccccCccccCCCCCcEEEccCCCcCCCcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCC
Q 003203 430 MSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGDISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFC 509 (839)
Q Consensus 430 l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 509 (839)
.+.|..||||+|.|+.+.+++.-++.+|.|++++|.+..+..+..|++|++|||++|.++++-..-.+|.|.++|.+++|
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 45799999999999999999999999999999999999998899999999999999999887666678889999999997
Q ss_pred cCCCccCchhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCCEEEEEeccccCCCcc
Q 003203 510 RNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKG 577 (839)
Q Consensus 510 ~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~ 577 (839)
. +..+.. +++|-+|..|++.+|.+. ....+..++++|.|+.+.+.+|.+..+++.
T Consensus 363 ~-iE~LSG--L~KLYSLvnLDl~~N~Ie----------~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 363 K-IETLSG--LRKLYSLVNLDLSSNQIE----------ELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred h-Hhhhhh--hHhhhhheeccccccchh----------hHHHhcccccccHHHHHhhcCCCccccchH
Confidence 6 777764 899999999999999885 334567889999999999999998877653
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=2.3e-10 Score=106.24 Aligned_cols=131 Identities=24% Similarity=0.278 Sum_probs=52.3
Q ss_pred cCCCCccEEEeCCCcccccCcccc-CCCCCcEEEccCCCcCCCcccCCCCCCCEEEccCCCCCCCchhh-cCCCccCeEe
Q 003203 428 TGMSKLRGLALSEMQLLSLPPSVH-LLSNLQTLCLDQCVVGDISIIGNLKKLEILSLVDSDIERLPNEI-GQLTQLRCLD 505 (839)
Q Consensus 428 ~~l~~L~~L~l~~~~~~~lp~~~~-~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~ 505 (839)
.+..+++.|+|++|.|+.+. .++ .+.+|+.|++++|.+..++.+..+++|++|++++|.|++++..+ ..+++|++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 34557788888888888764 354 57888888898888888888888899999999999888887655 3688899999
Q ss_pred cCCCcCCCccCc-hhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCCEEEEEe
Q 003203 506 LSFCRNLKVIPP-NVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQI 568 (839)
Q Consensus 506 l~~~~~l~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~ 568 (839)
+++|. +..+.. ..++.+++|+.|++.+|++... ......-+..+|+|+.|+-..
T Consensus 95 L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~--------~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 95 LSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEK--------KNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS--------TTHHHHHHHH-TT-SEETTEE
T ss_pred CcCCc-CCChHHhHHHHcCCCcceeeccCCcccch--------hhHHHHHHHHcChhheeCCEE
Confidence 98875 444332 2267888899999988887521 223344567788888886543
No 36
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.05 E-value=1e-11 Score=124.70 Aligned_cols=285 Identities=14% Similarity=0.107 Sum_probs=152.4
Q ss_pred CCCCCCEEEccCC-CCC--CCchhhcCCCccCeEecCCCcCCCccCch-hhcCccccCeEEccCCccccccccccccccc
Q 003203 474 NLKKLEILSLVDS-DIE--RLPNEIGQLTQLRCLDLSFCRNLKVIPPN-VISKLTQLEELYMGNTSVKWEFEGLNIERSN 549 (839)
Q Consensus 474 ~l~~L~~L~l~~~-~l~--~lp~~i~~l~~L~~L~l~~~~~l~~~p~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 549 (839)
+++++++|.+.+| +++ .+-.--..+++|++|++..|..++..... ....+++|++|++++|.-... .
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~---------~ 232 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG---------N 232 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc---------C
Confidence 4455555555555 333 11122245666666666666666554432 234566777777776653210 0
Q ss_pred cchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHH---HHHHhccc
Q 003203 550 ASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDE---ILMQLKGI 626 (839)
Q Consensus 550 ~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~---~~~~l~~L 626 (839)
.+-.-.+++..++.+...++.-... .... ........+..+++..|..++... +...+..|
T Consensus 233 gv~~~~rG~~~l~~~~~kGC~e~~l--e~l~--------------~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 233 GVQALQRGCKELEKLSLKGCLELEL--EALL--------------KAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred cchHHhccchhhhhhhhcccccccH--HHHH--------------HHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 1111123334444444443221110 0000 000111223333444554444433 33446677
Q ss_pred ceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhcccccccccccccccccccC
Q 003203 627 EHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICHSQLTAVSFC 706 (839)
Q Consensus 627 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~ 706 (839)
+.|+..+|....+....--..+.++|+.|.+++|..+... .......+.+.|+.+++.+|....+-... -...+++
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~---~ft~l~rn~~~Le~l~~e~~~~~~d~tL~-sls~~C~ 372 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR---GFTMLGRNCPHLERLDLEECGLITDGTLA-SLSRNCP 372 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh---hhhhhhcCChhhhhhcccccceehhhhHh-hhccCCc
Confidence 8888888777665433222345688888888888764322 11223456778888888887655443111 1134678
Q ss_pred CCCEEEEecCCCcccccch---hhhhcCCCccEEEEecccchHHHhhcccCCccccCCCccccccccceeeccccccccc
Q 003203 707 NLKIIKVRNCDRLKNVFSF---SIARGLPQLQTITVIKCKNVEEIFMMERDGYVDCKEVNKIEFSQLRSLTLKFLPRLRS 783 (839)
Q Consensus 707 ~L~~L~i~~c~~L~~l~~~---~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~ 783 (839)
.|+.|.+++|..+++.... ....++..|+.+++.+||.+++..... +..++.|+.+++.+|....+
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~-----------l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH-----------LSICRNLERIELIDCQDVTK 441 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHH-----------HhhCcccceeeeechhhhhh
Confidence 8888888888877765210 122456778888888888887654332 23577888888888887776
Q ss_pred cccc-cccchhhhhhh
Q 003203 784 FYFQ-MEASATAKETH 798 (839)
Q Consensus 784 l~~~-~~~~~~~l~~~ 798 (839)
=+.. +..++++.+..
T Consensus 442 ~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 442 EAISRFATHLPNIKVH 457 (483)
T ss_pred hhhHHHHhhCccceeh
Confidence 6543 33455555444
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.05 E-value=8.1e-11 Score=125.22 Aligned_cols=176 Identities=23% Similarity=0.222 Sum_probs=80.8
Q ss_pred cceEEecCCCCC-----CCCCCC-CCCCccEEeecCCCCCC-----CCChhhhcCCCCccEEEeCCCccc-ccCccccCC
Q 003203 386 CSAVFLNDIKTG-----VLPEGL-EYPQLDFFCMNSKDPFF-----KMPENFFTGMSKLRGLALSEMQLL-SLPPSVHLL 453 (839)
Q Consensus 386 ~~~l~l~~~~~~-----~l~~~~-~~~~L~~L~l~~~~~~~-----~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l 453 (839)
++.+.+.++.+. .++... ..++++.+.++++.... ......+..+++|+.|++++|.+. ..+..+..+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 555555555541 122222 34456666665554321 000122344556666666666554 223333333
Q ss_pred C---CCcEEEccCCCcCC------CcccCCC-CCCCEEEccCCCCC-----CCchhhcCCCccCeEecCCCcCCCc----
Q 003203 454 S---NLQTLCLDQCVVGD------ISIIGNL-KKLEILSLVDSDIE-----RLPNEIGQLTQLRCLDLSFCRNLKV---- 514 (839)
Q Consensus 454 ~---~L~~L~l~~~~~~~------~~~~~~l-~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~l~~---- 514 (839)
. +|++|++++|.+.. ...+..+ ++|+.|++++|.++ .++..+..+.+|++|++++|. ++.
T Consensus 105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~ 183 (319)
T cd00116 105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIR 183 (319)
T ss_pred hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHH
Confidence 3 36666666665542 1233344 56666666666555 223344455556666666554 221
Q ss_pred -cCchhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCCEEEEEecc
Q 003203 515 -IPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQD 570 (839)
Q Consensus 515 -~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 570 (839)
++.. +..+++|++|++++|.+... ........+..+++|+.|++++|.
T Consensus 184 ~l~~~-l~~~~~L~~L~L~~n~i~~~-------~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 184 ALAEG-LKANCNLEVLDLNNNGLTDE-------GASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHH-HHhCCCCCEEeccCCccChH-------HHHHHHHHhcccCCCCEEecCCCc
Confidence 1111 33344666666665554310 011122334445555666555544
No 38
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.03 E-value=1e-10 Score=124.37 Aligned_cols=83 Identities=22% Similarity=0.203 Sum_probs=37.0
Q ss_pred cCCCCccEEEeCCCccc-----ccCccccCCCCCcEEEccCCCcCC--------CcccCCCCCCCEEEccCCCCC-CCch
Q 003203 428 TGMSKLRGLALSEMQLL-----SLPPSVHLLSNLQTLCLDQCVVGD--------ISIIGNLKKLEILSLVDSDIE-RLPN 493 (839)
Q Consensus 428 ~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~--------~~~~~~l~~L~~L~l~~~~l~-~lp~ 493 (839)
..+.+|++|+++++.++ .++..+...++|++|+++++.+.. +..+.++++|++|++++|.+. ..+.
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 44444555555555442 233344444445555555544331 123344455555555555443 2233
Q ss_pred hhcCCCc---cCeEecCCCc
Q 003203 494 EIGQLTQ---LRCLDLSFCR 510 (839)
Q Consensus 494 ~i~~l~~---L~~L~l~~~~ 510 (839)
.+..+.+ |++|++++|.
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHHhccCcccEEEeeCCc
Confidence 3333332 5555555543
No 39
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.03 E-value=2.7e-08 Score=108.28 Aligned_cols=182 Identities=12% Similarity=0.105 Sum_probs=113.2
Q ss_pred cCCCCCccccchHHHHHH---HHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHH
Q 003203 29 RSNQGYKSFESRKSILCD---ILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQD 105 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~---l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 105 (839)
..|....+|+|++..++. +.+++..+....+.|+|++|+||||+|+.+++..... |+.++....-..-.+
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~-------~~~l~a~~~~~~~ir 78 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP-------FEALSAVTSGVKDLR 78 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------EEEEecccccHHHHH
Confidence 345677889999998777 8888888877889999999999999999998876422 333332221111112
Q ss_pred HHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEE--eCchh--hhhhh
Q 003203 106 EIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLA--SRYRD--ILVSE 179 (839)
Q Consensus 106 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivT--tr~~~--~~~~~ 179 (839)
++.+.. ......+++.+|++|+++.. .+.+.+...+. .+..+++. |.+.. +....
T Consensus 79 ~ii~~~----------------~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 79 EVIEEA----------------RQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred HHHHHH----------------HHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHH
Confidence 222211 11112357889999999865 23344433322 24444443 33322 11112
Q ss_pred cCccceEEccCCCHHHHHHHHHHHhCCC-CCC-cchHHHHHHHHHHhCCchhHHHHHHH
Q 003203 180 MHSQYNYCVSVLNKEEAWSLFKKMVGDY-VED-SDLESIAIQVANECGGLPLAIVIVAR 236 (839)
Q Consensus 180 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~-~~~-~~~~~~~~~I~~~~~G~Plai~~~~~ 236 (839)
......+++.+++.++..+++.+.+... ... .-.++..+.|++.++|.+..+..+..
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 2334689999999999999999876321 111 22355678899999999876544433
No 40
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.99 E-value=8e-09 Score=104.48 Aligned_cols=176 Identities=15% Similarity=0.143 Sum_probs=113.3
Q ss_pred ccCCCCCccccchHHHH---HHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC-CHHHH
Q 003203 28 LRSNQGYKSFESRKSIL---CDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA-NVKRI 103 (839)
Q Consensus 28 ~~~~~~~~~fvgR~~~~---~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~ 103 (839)
...|....++||.+..+ .-|..++..+.+....+||++|+||||||+.+....... |..++... +++++
T Consensus 17 rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~-------f~~~sAv~~gvkdl 89 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA-------FEALSAVTSGVKDL 89 (436)
T ss_pred HhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc-------eEEeccccccHHHH
Confidence 34567778888887665 456777778888888899999999999999999866532 33444333 23333
Q ss_pred HHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEE--EeCchhhh--h
Q 003203 104 QDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILL--ASRYRDIL--V 177 (839)
Q Consensus 104 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iiv--Ttr~~~~~--~ 177 (839)
+++++. -.+....+++.+|++|.|+.. .+-+.+ ++.-..|.-|+| ||.++... .
T Consensus 90 -r~i~e~----------------a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ 149 (436)
T COG2256 90 -REIIEE----------------ARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNP 149 (436)
T ss_pred -HHHHHH----------------HHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecH
Confidence 333321 112222479999999999754 343433 333456777776 44444321 2
Q ss_pred hhcCccceEEccCCCHHHHHHHHHHHhCC---CCC--Cc-chHHHHHHHHHHhCCchhH
Q 003203 178 SEMHSQYNYCVSVLNKEEAWSLFKKMVGD---YVE--DS-DLESIAIQVANECGGLPLA 230 (839)
Q Consensus 178 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~---~~~--~~-~~~~~~~~I~~~~~G~Pla 230 (839)
.......++++++|+.++..+++.+.+-+ ... .. -.+++...+++.++|---+
T Consensus 150 ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 150 ALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred HHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 12345679999999999999999995511 111 11 1245677889999987543
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=4.6e-10 Score=104.19 Aligned_cols=123 Identities=26% Similarity=0.377 Sum_probs=48.5
Q ss_pred CcccccCccccCCCCCcEEEccCCCcCCCcccC-CCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchh
Q 003203 441 MQLLSLPPSVHLLSNLQTLCLDQCVVGDISIIG-NLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNV 519 (839)
Q Consensus 441 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~ 519 (839)
+.+...|. +.+..+++.|+|++|.|..++.++ .+.+|+.|++++|.|++++ ++..+++|++|++++|. ++.++...
T Consensus 7 ~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l 83 (175)
T PF14580_consen 7 NMIEQIAQ-YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGL 83 (175)
T ss_dssp ------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHH
T ss_pred cccccccc-cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccch
Confidence 34444443 445667999999999999998888 6899999999999999886 58889999999999987 88887652
Q ss_pred hcCccccCeEEccCCccccccccccccccccchhhhccCCCCCEEEEEeccccCCCc
Q 003203 520 ISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPK 576 (839)
Q Consensus 520 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 576 (839)
...+++|++|++++|.+. ....+..+..+++|+.|++.+|.+...+.
T Consensus 84 ~~~lp~L~~L~L~~N~I~----------~l~~l~~L~~l~~L~~L~L~~NPv~~~~~ 130 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKIS----------DLNELEPLSSLPKLRVLSLEGNPVCEKKN 130 (175)
T ss_dssp HHH-TT--EEE-TTS-------------SCCCCGGGGG-TT--EEE-TT-GGGGSTT
T ss_pred HHhCCcCCEEECcCCcCC----------ChHHhHHHHcCCCcceeeccCCcccchhh
Confidence 357999999999999985 33456788999999999999998876543
No 42
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.96 E-value=1.2e-11 Score=124.35 Aligned_cols=287 Identities=16% Similarity=0.156 Sum_probs=191.2
Q ss_pred CCCEEEccCCC---CCCCchhhcCCCccCeEecCCCcCCCccCchhh-cCccccCeEEccCCccccccccccccccccch
Q 003203 477 KLEILSLVDSD---IERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVI-SKLTQLEELYMGNTSVKWEFEGLNIERSNASL 552 (839)
Q Consensus 477 ~L~~L~l~~~~---l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 552 (839)
.|+.|.++++. ...+-....+++++++|.+.+|.++++-.-..+ ..+.+|++|++..|... ....+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~i----------T~~~L 208 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSI----------TDVSL 208 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchh----------HHHHH
Confidence 46666676662 223444467899999999999987776443223 46889999999987643 22233
Q ss_pred h-hhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHHH---HHHhcccce
Q 003203 553 Q-ELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDEI---LMQLKGIEH 628 (839)
Q Consensus 553 ~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~---~~~l~~L~~ 628 (839)
. .-..+++|++|+++++.-..- .+ ++ ........++.+.+++|........ -....-+.+
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~-~g-----v~----------~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~ 272 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISG-NG-----VQ----------ALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILK 272 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhc-Cc-----ch----------HHhccchhhhhhhhcccccccHHHHHHHhccChHhhc
Confidence 3 346789999999998653221 00 00 0111223355555566766665542 233445677
Q ss_pred EEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhcccccccccccccccccccCCC
Q 003203 629 LYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICHSQLTAVSFCNL 708 (839)
Q Consensus 629 L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L 708 (839)
+++..|..+++.........+..|+.|..++|..+. +...+.-....++|+.|.+..|..+++...... ..+.+.|
T Consensus 273 lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~---d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l-~rn~~~L 348 (483)
T KOG4341|consen 273 LNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDIT---DEVLWALGQHCHNLQVLELSGCQQFSDRGFTML-GRNCPHL 348 (483)
T ss_pred cchhhhccccchHHHHHhhhhhHhhhhcccCCCCCc---hHHHHHHhcCCCceEEEeccccchhhhhhhhhh-hcCChhh
Confidence 777788877765533333557899999999998643 333333455779999999999999888755443 3467899
Q ss_pred CEEEEecCCCcccccchhhhhcCCCccEEEEecccchHHHhhcccCCccccCCCccccccccceeecccccccccccccc
Q 003203 709 KIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKCKNVEEIFMMERDGYVDCKEVNKIEFSQLRSLTLKFLPRLRSFYFQM 788 (839)
Q Consensus 709 ~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~ 788 (839)
+.+++.+|....+-.-.+...++|.|+.|.+++|..+++-...... .....+..|..|.+.+||.+..--...
T Consensus 349 e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~-------~~~c~~~~l~~lEL~n~p~i~d~~Le~ 421 (483)
T KOG4341|consen 349 ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS-------SSSCSLEGLEVLELDNCPLITDATLEH 421 (483)
T ss_pred hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh-------hccccccccceeeecCCCCchHHHHHH
Confidence 9999999987776533345678999999999999988876322111 111246789999999999887766666
Q ss_pred ccchhhhhhhhh
Q 003203 789 EASATAKETHRE 800 (839)
Q Consensus 789 ~~~~~~l~~~~~ 800 (839)
..+++.++.+.-
T Consensus 422 l~~c~~Leri~l 433 (483)
T KOG4341|consen 422 LSICRNLERIEL 433 (483)
T ss_pred HhhCcccceeee
Confidence 667777776533
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.94 E-value=4.5e-11 Score=124.59 Aligned_cols=176 Identities=23% Similarity=0.310 Sum_probs=113.7
Q ss_pred ceEEecCCCCCCCCCCC-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCCC
Q 003203 387 SAVFLNDIKTGVLPEGL-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCV 465 (839)
Q Consensus 387 ~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~ 465 (839)
...+++.|++..+|..+ .|..|..+.++.|.. ..+|..+ .++..|.+|+|+.|+++.+|..++.|+ |+.|.+++|+
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~-r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCI-RTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccc-eecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc
Confidence 34556666666666555 455666666665542 4455443 566677777777777777777666655 6777777776
Q ss_pred cCC-CcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcccccccccc
Q 003203 466 VGD-ISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLN 544 (839)
Q Consensus 466 ~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 544 (839)
++. |+.++.+..|.+||.+.|.+..+|..++.+.+|+.|++..|. +..+|.+ ++.| .|..|++++|++.
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNkis------- 224 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKIS------- 224 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCcee-------
Confidence 666 566666677777777777777777777777777777777654 6666665 4544 3667777776654
Q ss_pred ccccccchhhhccCCCCCEEEEEeccccCCCccccc
Q 003203 545 IERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFS 580 (839)
Q Consensus 545 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 580 (839)
..+-.+.+|+.|++|-+.+|.+.+-|..+..
T Consensus 225 -----~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 225 -----YLPVDFRKMRHLQVLQLENNPLQSPPAQICE 255 (722)
T ss_pred -----ecchhhhhhhhheeeeeccCCCCCChHHHHh
Confidence 2334566777777777777777666655544
No 44
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.92 E-value=4.2e-08 Score=109.21 Aligned_cols=206 Identities=20% Similarity=0.210 Sum_probs=121.8
Q ss_pred CCCccccchHHHHHHHHHHhcC-----CCeeEEEEEcCCCCcHHHHHHHHHHHHHHh---ccCC--eEEEEEEecCCCHH
Q 003203 32 QGYKSFESRKSILCDILDWLTS-----PNVNMIGVYGIGGVGKTALMHEVLFEAKKQ---NLFD--QVIFVLASSTANVK 101 (839)
Q Consensus 32 ~~~~~fvgR~~~~~~l~~~l~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---~~f~--~~~wv~~~~~~~~~ 101 (839)
.-++.+.||++|+++|...|.. ....++.|+|++|.|||++++.|.+++... .... .+++|++....+..
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 3456799999999999998862 223577899999999999999999887532 1122 36778877777888
Q ss_pred HHHHHHHHHhhhhccCCC--chHHHHHHHHHHHc--CCcEEEEEeCCCCcc--ccccccccCC-CCCCCceEEE--EeCc
Q 003203 102 RIQDEIADQLCLELCKGT--ESERARTLFDRLWK--ENKILVILDDICTSI--DLVTVGIPFG-NAHRGCKILL--ASRY 172 (839)
Q Consensus 102 ~~~~~i~~~l~~~~~~~~--~~~~~~~~~~~l~~--~~~~LlVlDdv~~~~--~~~~l~~~l~-~~~~~s~iiv--Ttr~ 172 (839)
.++..|..++....+... ..+....++..+.. ....+||||+++... .-+.+...+. ....+++|+| +|.+
T Consensus 832 sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 899999988854333221 22344455554422 234589999998542 1111211111 1123455444 4433
Q ss_pred hhhh-------hhhcCccceEEccCCCHHHHHHHHHHHhCCC--CCCcc-hHHHHHHHHHHhCCchhHHHHHHHHh
Q 003203 173 RDIL-------VSEMHSQYNYCVSVLNKEEAWSLFKKMVGDY--VEDSD-LESIAIQVANECGGLPLAIVIVARAL 238 (839)
Q Consensus 173 ~~~~-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~--~~~~~-~~~~~~~I~~~~~G~Plai~~~~~~L 238 (839)
.... ...+ ....+..+|++.+|..+++..++... ..+++ ++-+++.+++..|-.-.||.++-.+.
T Consensus 912 lDLperLdPRLRSRL-g~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 912 MDLPERLIPRCRSRL-AFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hhcchhhhhhhhhcc-ccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 2211 1011 12346789999999999999998532 11222 22233333333344456666554444
No 45
>PRK06893 DNA replication initiation factor; Validated
Probab=98.89 E-value=2.1e-08 Score=99.63 Aligned_cols=183 Identities=14% Similarity=0.106 Sum_probs=107.6
Q ss_pred CccccCCCCCccccchHHHH--HHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHH
Q 003203 25 DMWLRSNQGYKSFESRKSIL--CDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKR 102 (839)
Q Consensus 25 ~~~~~~~~~~~~fvgR~~~~--~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 102 (839)
++..+++...++|+|-+... ..+.+.......+.+.|+|++|+|||.||+.+++....+ ...+.|+++.... .
T Consensus 6 ~~~~~~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~ 80 (229)
T PRK06893 6 PIHQIDDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---Y 80 (229)
T ss_pred CCCCCCcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---h
Confidence 44555667778888544321 222222223334678999999999999999999997654 3356677653210 0
Q ss_pred HHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc---ccccc-ccccCCCC-CCCceEEEEeCch----
Q 003203 103 IQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS---IDLVT-VGIPFGNA-HRGCKILLASRYR---- 173 (839)
Q Consensus 103 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~---~~~~~-l~~~l~~~-~~~s~iivTtr~~---- 173 (839)
... ...+.+. +.-+||+||+|.. .+|+. +...+... ..|..+||+|.+.
T Consensus 81 ~~~--------------------~~~~~~~--~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~ 138 (229)
T PRK06893 81 FSP--------------------AVLENLE--QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHA 138 (229)
T ss_pred hhH--------------------HHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHH
Confidence 000 1122221 3458999999863 23332 22222211 2355565544433
Q ss_pred ------hhhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHHH
Q 003203 174 ------DILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVAR 236 (839)
Q Consensus 174 ------~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~ 236 (839)
.+.. .......++++++++++.++++++.+..... .-.+++.+-|+++++|..-.+..+-.
T Consensus 139 l~~~~~~L~s-Rl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l-~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 139 LSIKLPDLAS-RLTWGEIYQLNDLTDEQKIIVLQRNAYQRGI-ELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred ccccchhHHH-HHhcCCeeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 2222 3344568899999999999999988843221 22256677899999887766554443
No 46
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.84 E-value=6.9e-08 Score=103.35 Aligned_cols=205 Identities=12% Similarity=0.096 Sum_probs=119.1
Q ss_pred ccCCCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCH--HHHHH
Q 003203 28 LRSNQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANV--KRIQD 105 (839)
Q Consensus 28 ~~~~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~ 105 (839)
...|....+|+|++..++.+..++..+..+.+.++|++|+||||+|+.+++.......-...+.++++...+. ..+..
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhc
Confidence 3456667889999999999999998877678899999999999999999988753211112445554321100 00000
Q ss_pred --HHHHHhhhh-ccCCCchHHHHHHHHHHHc-----CCcEEEEEeCCCCcc--ccccccccCCCCCCCceEEEEeCchh-
Q 003203 106 --EIADQLCLE-LCKGTESERARTLFDRLWK-----ENKILVILDDICTSI--DLVTVGIPFGNAHRGCKILLASRYRD- 174 (839)
Q Consensus 106 --~i~~~l~~~-~~~~~~~~~~~~~~~~l~~-----~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTtr~~~- 174 (839)
.....++.. .......+....+.+.... ..+-+||+||++... ....+...+......+++|+|+....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000001100 0001112223333333221 234589999997552 23333333333345577887775443
Q ss_pred hhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHH
Q 003203 175 ILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVI 233 (839)
Q Consensus 175 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 233 (839)
+..........+++.+++.++..+++.+.+...... -..+..+.+++.++|.+-.+..
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 222112234578899999999999999877432221 2245678899999998655443
No 47
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=5.8e-08 Score=110.00 Aligned_cols=186 Identities=16% Similarity=0.146 Sum_probs=119.2
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCeeE-EEEEcCCCCcHHHHHHHHHHHHHHhcc-------------------CCeE
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNVNM-IGVYGIGGVGKTALMHEVLFEAKKQNL-------------------FDQV 89 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~~~-v~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------f~~~ 89 (839)
.|....+++|.+..++.|.+++..++..- +.++|+.|+||||+|+.+++.+..... |..+
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 45677889999999999999998877665 489999999999999999988753211 1112
Q ss_pred EEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccccCCCCCCCceEE
Q 003203 90 IFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS--IDLVTVGIPFGNAHRGCKIL 167 (839)
Q Consensus 90 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ii 167 (839)
++++......+..+ ++|...+ ...-..+++-++|+|+++.. ...+.++..+.......++|
T Consensus 91 iEidAas~~kVDdI-ReLie~v----------------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFI 153 (944)
T PRK14949 91 IEVDAASRTKVDDT-RELLDNV----------------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFL 153 (944)
T ss_pred EEeccccccCHHHH-HHHHHHH----------------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 22322211112211 2222211 11111357789999999865 34555555554444566677
Q ss_pred EEeCchh-hhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHH
Q 003203 168 LASRYRD-ILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVI 233 (839)
Q Consensus 168 vTtr~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 233 (839)
++|.+.. +..........|++++++.++..+.+.+.+...... .-.+....|++.++|.|-.+..
T Consensus 154 LaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~-~edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 154 LATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP-FEAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred EECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 6665543 333223345789999999999999999887432221 2245678899999998864433
No 48
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.82 E-value=1.9e-07 Score=103.76 Aligned_cols=183 Identities=14% Similarity=0.142 Sum_probs=120.4
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHHHHhcc-------------------CCeE
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNV-NMIGVYGIGGVGKTALMHEVLFEAKKQNL-------------------FDQV 89 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------f~~~ 89 (839)
.|....+++|.+..++.|.+++..+++ ..+.++|+.|+||||+|+.+.+.+..... |..+
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 466778899999999999999987764 46689999999999999999887743211 1123
Q ss_pred EEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccccCCCCCCC
Q 003203 90 IFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLW----KENKILVILDDICTSI--DLVTVGIPFGNAHRG 163 (839)
Q Consensus 90 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~ 163 (839)
++++.+....+.+ ++.+++... .++.-++|||+++... .++.+...+..-..+
T Consensus 91 iEIDAas~rgVDd---------------------IReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 91 VEMDAASNRGVDE---------------------MAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred EEecccccccHHH---------------------HHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 3333322222222 222222221 2455688899998763 355555554444457
Q ss_pred ceEEEEeCchhhh-hhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCch-hHHHHH
Q 003203 164 CKILLASRYRDIL-VSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLP-LAIVIV 234 (839)
Q Consensus 164 s~iivTtr~~~~~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~P-lai~~~ 234 (839)
.++|++|++..-. .........+++++++.++..+.+.+.++.+...- .++....|++.++|.. -++..+
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i-d~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF-EPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 7888888775432 22234467899999999999999999885433221 2455778999998865 455553
No 49
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.81 E-value=6.3e-08 Score=96.97 Aligned_cols=180 Identities=14% Similarity=0.173 Sum_probs=109.2
Q ss_pred CCCCCccccc--hHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHH
Q 003203 30 SNQGYKSFES--RKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEI 107 (839)
Q Consensus 30 ~~~~~~~fvg--R~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 107 (839)
.+...++|++ .+..++++.+++.....+.+.|+|++|+|||++|+.++++.... ....++++++.-.+ ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~------~~ 81 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQ------AD 81 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHH------hH
Confidence 3344556663 55678888888765566789999999999999999999887533 33455665443211 00
Q ss_pred HHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc---c-cccccccCCC-CCCCceEEEEeCchhhh------
Q 003203 108 ADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI---D-LVTVGIPFGN-AHRGCKILLASRYRDIL------ 176 (839)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~---~-~~~l~~~l~~-~~~~s~iivTtr~~~~~------ 176 (839)
......+ . +.-+||+||++... . .+.+...+.. ...+.++|+||+.....
T Consensus 82 -----------------~~~~~~~-~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~ 142 (226)
T TIGR03420 82 -----------------PEVLEGL-E-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLP 142 (226)
T ss_pred -----------------HHHHhhc-c-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccH
Confidence 0111112 1 23489999997543 1 2223222221 12345788888854311
Q ss_pred --hhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHHHH
Q 003203 177 --VSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVARA 237 (839)
Q Consensus 177 --~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~ 237 (839)
.........++++++++++...+++..+..... .-.++..+.|++.++|+|..+..+...
T Consensus 143 ~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 143 DLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGL-QLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 111222457899999999999999876632111 122455778888899999877665433
No 50
>PLN03025 replication factor C subunit; Provisional
Probab=98.80 E-value=8.3e-08 Score=100.87 Aligned_cols=189 Identities=13% Similarity=0.017 Sum_probs=117.2
Q ss_pred ccccCCCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCC-eEEEEEEecCCCHHHHH
Q 003203 26 MWLRSNQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFD-QVIFVLASSTANVKRIQ 104 (839)
Q Consensus 26 ~~~~~~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~ 104 (839)
+....|....+++|.++.++.|.+++..++.+.+.++|++|+||||+|+.+++..... .|. .++-++.+...+... .
T Consensus 4 ~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~~-v 81 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGIDV-V 81 (319)
T ss_pred hhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHHH-H
Confidence 3345677788899999999999998887777778899999999999999999887432 222 233333333333322 2
Q ss_pred HHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccccCCCCCCCceEEEEeCchh-hhhhhcC
Q 003203 105 DEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI--DLVTVGIPFGNAHRGCKILLASRYRD-ILVSEMH 181 (839)
Q Consensus 105 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTtr~~~-~~~~~~~ 181 (839)
+++.+.+..... ....++.-++|+|+++... ....+...+......+++|+++.... +......
T Consensus 82 r~~i~~~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S 148 (319)
T PLN03025 82 RNKIKMFAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS 148 (319)
T ss_pred HHHHHHHHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH
Confidence 222221111000 0002356789999998652 23334333333345567777775432 2111122
Q ss_pred ccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhH
Q 003203 182 SQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLA 230 (839)
Q Consensus 182 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 230 (839)
....++++++++++..+.+...+......-+ .+..+.|++.++|..-.
T Consensus 149 Rc~~i~f~~l~~~~l~~~L~~i~~~egi~i~-~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 149 RCAIVRFSRLSDQEILGRLMKVVEAEKVPYV-PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred hhhcccCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHH
Confidence 3457999999999999999988843222211 44578899999987643
No 51
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=8.6e-10 Score=111.81 Aligned_cols=188 Identities=21% Similarity=0.166 Sum_probs=109.1
Q ss_pred cccccceEEecCCCCCCCCC---CCCCCCccEEeecCCCCCC-CCChhhhcCCCCccEEEeCCCcccccCccc--cCCCC
Q 003203 382 ILKNCSAVFLNDIKTGVLPE---GLEYPQLDFFCMNSKDPFF-KMPENFFTGMSKLRGLALSEMQLLSLPPSV--HLLSN 455 (839)
Q Consensus 382 ~~~~~~~l~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~--~~l~~ 455 (839)
-+++++.+++..+.....+. .-.|++++.|+++.|-... ..-..+...+++|+.|+++.|.+....++. ..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 36678888888888766653 2267788888877764311 111234566777888888877765332221 35667
Q ss_pred CcEEEccCCCcCC--C-cccCCCCCCCEEEccCC-CCCCCchhhcCCCccCeEecCCCcCCCccCc-hhhcCccccCeEE
Q 003203 456 LQTLCLDQCVVGD--I-SIIGNLKKLEILSLVDS-DIERLPNEIGQLTQLRCLDLSFCRNLKVIPP-NVISKLTQLEELY 530 (839)
Q Consensus 456 L~~L~l~~~~~~~--~-~~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~-~~l~~l~~L~~L~ 530 (839)
|+.|.++.|.+.. + .....+++|+.|+|..| .+..-..+...+..|+.|+|++|. +..++. ...+.++.|+.|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhh
Confidence 7777777777664 1 33445677777777777 333222223445667777777765 333331 1256777777777
Q ss_pred ccCCccccccccccccccccchhhhccCCCCCEEEEEeccccCCC
Q 003203 531 MGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILP 575 (839)
Q Consensus 531 l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~ 575 (839)
++.|.+...-. ....+......+++|+.|++..|.+..++
T Consensus 278 ls~tgi~si~~-----~d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 278 LSSTGIASIAE-----PDVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred ccccCcchhcC-----CCccchhhhcccccceeeecccCcccccc
Confidence 77766531100 01122333455666666666666655444
No 52
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=3.6e-07 Score=97.65 Aligned_cols=180 Identities=17% Similarity=0.198 Sum_probs=115.1
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHHHHhccC-------------------CeE
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNV-NMIGVYGIGGVGKTALMHEVLFEAKKQNLF-------------------DQV 89 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f-------------------~~~ 89 (839)
.|....+++|.+..++.+.+.+..++. ..+.++|+.|+||||+|+.+++........ ...
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 356677899999999999999987665 457899999999999999999887422111 112
Q ss_pred EEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccccCCCCCCC
Q 003203 90 IFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLW----KENKILVILDDICTSI--DLVTVGIPFGNAHRG 163 (839)
Q Consensus 90 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~ 163 (839)
.++..+... ..+....+.+.+. .+++-++|+|+++... .++.+...+......
T Consensus 91 ~~~~~~~~~---------------------~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~ 149 (363)
T PRK14961 91 IEIDAASRT---------------------KVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQH 149 (363)
T ss_pred EEecccccC---------------------CHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence 222211111 1122223332221 2356699999998663 355555555544556
Q ss_pred ceEEEEeCchh-hhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHH
Q 003203 164 CKILLASRYRD-ILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAI 231 (839)
Q Consensus 164 s~iivTtr~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 231 (839)
.++|++|.+.. +..........+++++++.++..+.+.+.+......- .++.++.|++.++|.|-.+
T Consensus 150 ~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i-~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 150 IKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT-DEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred eEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 67777776543 3221223356899999999999999988773322111 2345778999999988643
No 53
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.77 E-value=2e-07 Score=98.93 Aligned_cols=188 Identities=11% Similarity=0.068 Sum_probs=114.8
Q ss_pred cccCCCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCe-EEEEEEecCCCHHHHHH
Q 003203 27 WLRSNQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQ-VIFVLASSTANVKRIQD 105 (839)
Q Consensus 27 ~~~~~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~ 105 (839)
....|....+++|+++.++.+.+++.....+.+.|+|+.|+||||+|+.+++...... +.. .+-++.+.......+ .
T Consensus 9 ~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~~~~~-~ 86 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRENFLELNASDERGIDVI-R 86 (319)
T ss_pred hhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-cccceEEeccccccchHHH-H
Confidence 3445566778999999999999999877777789999999999999999998875332 211 222222222222211 1
Q ss_pred HHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccccCCCCCCCceEEEEeCchh-hhhhhcCc
Q 003203 106 EIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI--DLVTVGIPFGNAHRGCKILLASRYRD-ILVSEMHS 182 (839)
Q Consensus 106 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTtr~~~-~~~~~~~~ 182 (839)
+....+....+ .....+-++|+|+++... ....+...+......+++|+++.... +.......
T Consensus 87 ~~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 87 NKIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred HHHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 11111111000 001245689999987542 23344444444445567777765432 21111123
Q ss_pred cceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHH
Q 003203 183 QYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAI 231 (839)
Q Consensus 183 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 231 (839)
...+++++++.++....+.+.+...... -.++..+.+++.++|.+..+
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~~-i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGIE-ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 4578999999999999999888432221 12456788999999987653
No 54
>PRK04195 replication factor C large subunit; Provisional
Probab=98.75 E-value=6e-07 Score=99.93 Aligned_cols=185 Identities=15% Similarity=0.157 Sum_probs=115.6
Q ss_pred cccCCCCCccccchHHHHHHHHHHhcC----CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHH
Q 003203 27 WLRSNQGYKSFESRKSILCDILDWLTS----PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKR 102 (839)
Q Consensus 27 ~~~~~~~~~~fvgR~~~~~~l~~~l~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 102 (839)
.-..|....+++|+++.++++.+|+.. ...+.+.|+|++|+||||+|+.++++.. ++ ++-++.+...+..
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~- 79 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTAD- 79 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHH-
Confidence 344567778899999999999999862 1257899999999999999999998873 32 3344555433322
Q ss_pred HHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc------cccccccCCCCCCCceEEEEeCchhhh
Q 003203 103 IQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID------LVTVGIPFGNAHRGCKILLASRYRDIL 176 (839)
Q Consensus 103 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~------~~~l~~~l~~~~~~s~iivTtr~~~~~ 176 (839)
....++....... .+...++-+||+|+++.... +..+...+. ..+..||+|+.+..-.
T Consensus 80 ~i~~~i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~ 143 (482)
T PRK04195 80 VIERVAGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDP 143 (482)
T ss_pred HHHHHHHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCcccc
Confidence 2222222211100 01112678999999986422 333333332 2344577776554321
Q ss_pred h--hhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHH
Q 003203 177 V--SEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIV 234 (839)
Q Consensus 177 ~--~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 234 (839)
. ........+++.+++.++....+.+.+......-+ .++...|++.++|..-.+...
T Consensus 144 ~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~-~eaL~~Ia~~s~GDlR~ain~ 202 (482)
T PRK04195 144 SLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD-DEALKEIAERSGGDLRSAIND 202 (482)
T ss_pred chhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 1 11233567899999999999999888733222222 456889999999976654433
No 55
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.75 E-value=1.2e-09 Score=105.05 Aligned_cols=132 Identities=24% Similarity=0.206 Sum_probs=98.3
Q ss_pred ccccccceEEecCCCCCCCCCCC-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEE
Q 003203 381 DILKNCSAVFLNDIKTGVLPEGL-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTL 459 (839)
Q Consensus 381 ~~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L 459 (839)
+.|+.++.+++++|.+..+.+++ -.|.+|.|+++.|.. ..+.. +..+.+|..||||+|.++++-..-.+|-|.++|
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i-~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRI-RTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccce-eeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 34677888888888888887777 457888888888874 33332 466788888888888877665555677788888
Q ss_pred EccCCCcCCCcccCCCCCCCEEEccCCCCCCC--chhhcCCCccCeEecCCCcCCCccC
Q 003203 460 CLDQCVVGDISIIGNLKKLEILSLVDSDIERL--PNEIGQLTQLRCLDLSFCRNLKVIP 516 (839)
Q Consensus 460 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l--p~~i~~l~~L~~L~l~~~~~l~~~p 516 (839)
.|.+|.++++..+++|.+|.+||+++|+|..+ ..+||+|+.|+++.+.+|+ +..+|
T Consensus 358 ~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 358 KLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred ehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence 88888888888888888888888888888765 3467788888888877776 44444
No 56
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.74 E-value=1.6e-07 Score=88.94 Aligned_cols=183 Identities=14% Similarity=0.100 Sum_probs=97.7
Q ss_pred ccCCCCCccccchHHHHHHHHHHhc-----CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHH
Q 003203 28 LRSNQGYKSFESRKSILCDILDWLT-----SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKR 102 (839)
Q Consensus 28 ~~~~~~~~~fvgR~~~~~~l~~~l~-----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 102 (839)
...|....+|+|.+..++.+.-++. .+....+.+||++|+||||||.-+++..... | .+.+........+
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~---~~~sg~~i~k~~d 91 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--F---KITSGPAIEKAGD 91 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----E---EEEECCC--SCHH
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--e---EeccchhhhhHHH
Confidence 3556778899999998888765554 2346788999999999999999999988754 3 1222111111111
Q ss_pred HHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc--ccccccccc--------CCCCCC----------
Q 003203 103 IQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS--IDLVTVGIP--------FGNAHR---------- 162 (839)
Q Consensus 103 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~--------l~~~~~---------- 162 (839)
+ .. +...+ +++-+|++|+++.. .+-+.+..+ ....++
T Consensus 92 l-~~--------------------il~~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 92 L-AA--------------------ILTNL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp H-HH--------------------HHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred H-HH--------------------HHHhc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 1 11 12222 24557777888753 111111000 001111
Q ss_pred -CceEEEEeCchhhhhhhcC-ccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHHHHhc
Q 003203 163 -GCKILLASRYRDILVSEMH-SQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVARALR 239 (839)
Q Consensus 163 -~s~iivTtr~~~~~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~ 239 (839)
=+.|=-|||...+.....+ -....++...+.+|-.++..+.+..-... --++.+.+|++++.|-|--..-+-...+
T Consensus 149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~-i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE-IDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp --EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E-E-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred CceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC-cCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 2334467776544331112 23456899999999999999888442222 2256689999999999976555544443
No 57
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=2.1e-07 Score=102.39 Aligned_cols=180 Identities=14% Similarity=0.163 Sum_probs=117.9
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHHHHhc-------------------cCCeE
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNV-NMIGVYGIGGVGKTALMHEVLFEAKKQN-------------------LFDQV 89 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~ 89 (839)
.|....+++|.+...+.|.+++..++. ..+.++|+.|+||||+|+.+++.+.... .+..+
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 466778899999999999999987764 5779999999999999999988764321 11122
Q ss_pred EEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHH----HcCCcEEEEEeCCCCc--cccccccccCCCCCCC
Q 003203 90 IFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRL----WKENKILVILDDICTS--IDLVTVGIPFGNAHRG 163 (839)
Q Consensus 90 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l----~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~ 163 (839)
+.++.+....+. .++.+.... ..+++-++|+|+++.. .....+...+.....+
T Consensus 90 iEIDAAs~~~Vd---------------------dIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~ 148 (702)
T PRK14960 90 IEIDAASRTKVE---------------------DTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEH 148 (702)
T ss_pred EEecccccCCHH---------------------HHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 333332222222 222222221 1256678999999865 3445555555444456
Q ss_pred ceEEEEeCchh-hhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHH
Q 003203 164 CKILLASRYRD-ILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAI 231 (839)
Q Consensus 164 s~iivTtr~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 231 (839)
.++|++|.+.. +..........+++++++.++..+.+.+.+......-+ .+....|++.++|.+-.+
T Consensus 149 v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id-~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 149 VKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD-QDAIWQIAESAQGSLRDA 216 (702)
T ss_pred cEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 77887776643 22222344678999999999999999988843322222 445778999999977443
No 58
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=5e-07 Score=98.63 Aligned_cols=191 Identities=13% Similarity=0.090 Sum_probs=117.0
Q ss_pred cCCCCCccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHHHHhcc-------------------CCe
Q 003203 29 RSNQGYKSFESRKSILCDILDWLTSPNV-NMIGVYGIGGVGKTALMHEVLFEAKKQNL-------------------FDQ 88 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------f~~ 88 (839)
..|....+++|.+...+.|...+..++. ..+.++|++|+||||+|+.+++....... +..
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~d 87 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMD 87 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCc
Confidence 3566778899999999999988887776 45789999999999999999887643211 111
Q ss_pred EEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccccCCCCCCCceE
Q 003203 89 VIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS--IDLVTVGIPFGNAHRGCKI 166 (839)
Q Consensus 89 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~i 166 (839)
++.++.+...+..++ +++.+.... .. ..+++-++|+|+++.. ...+.+...+........+
T Consensus 88 v~el~aa~~~gid~i-R~i~~~~~~---------------~p-~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 88 VIELDAASNRGIDEI-RKIRDAVGY---------------RP-MEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred cEEEeCcccCCHHHH-HHHHHHHhh---------------Ch-hcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 233333222222222 122211100 00 1246679999999754 3344454444443344555
Q ss_pred EEEeCc-hhhhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCc-hhHHHHHHHH
Q 003203 167 LLASRY-RDILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGL-PLAIVIVARA 237 (839)
Q Consensus 167 ivTtr~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plai~~~~~~ 237 (839)
|++|.+ ..+..........+++.+++.++....+.+.+...... -.++....|++.++|- +.++..+-.+
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~-i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE-IDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 555544 33333223345689999999999999999887332211 1245577899888655 6677666553
No 59
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=1.7e-07 Score=102.72 Aligned_cols=181 Identities=13% Similarity=0.144 Sum_probs=118.1
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHHHHhc------------------------
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNVN-MIGVYGIGGVGKTALMHEVLFEAKKQN------------------------ 84 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~------------------------ 84 (839)
.|....++||.+..++.|.+++..++.. .+.++|+.|+||||+|+.+.+.+....
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 4667788999999999999999977754 568999999999999999998875311
Q ss_pred cCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCC
Q 003203 85 LFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFG 158 (839)
Q Consensus 85 ~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~ 158 (839)
.|..+++++...... .+.++.+.+.+. .++.-++|+|+++.. ...+.+...+.
T Consensus 91 ~hpDviEIdAas~~g---------------------VDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE 149 (700)
T PRK12323 91 RFVDYIEMDAASNRG---------------------VDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE 149 (700)
T ss_pred CCCcceEecccccCC---------------------HHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc
Confidence 011122222222111 222333333321 356678999999865 34555555554
Q ss_pred CCCCCceEEEEeCc-hhhhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHH
Q 003203 159 NAHRGCKILLASRY-RDILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIV 232 (839)
Q Consensus 159 ~~~~~s~iivTtr~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 232 (839)
.-..+.++|++|.+ ..+..........+.++.++.++..+.+.+.++......+ .+..+.|++.++|.|....
T Consensus 150 EPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d-~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 150 EPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE-VNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred cCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHH
Confidence 43455666665554 4444333344678999999999999999988743322222 3456789999999986443
No 60
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.2e-06 Score=92.36 Aligned_cols=200 Identities=20% Similarity=0.236 Sum_probs=128.1
Q ss_pred ccccchHHHHHHHHHHhc----CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHH
Q 003203 35 KSFESRKSILCDILDWLT----SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQ 110 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 110 (839)
+.+.+|+++++++...|. .....-+.|+|..|+|||+.++.+..+......-..+++|++....+...++.+|+++
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 348899999999998886 2233348999999999999999999998765333338999999999999999999999
Q ss_pred hhhh-ccCCCchHHHHHHHHHHHc-CCcEEEEEeCCCCcccc--ccccccCCCCC-CCceEE--EEeCchhhhhh-----
Q 003203 111 LCLE-LCKGTESERARTLFDRLWK-ENKILVILDDICTSIDL--VTVGIPFGNAH-RGCKIL--LASRYRDILVS----- 178 (839)
Q Consensus 111 l~~~-~~~~~~~~~~~~~~~~l~~-~~~~LlVlDdv~~~~~~--~~l~~~l~~~~-~~s~ii--vTtr~~~~~~~----- 178 (839)
++.. .......+....+.+.+.. ++.+++|||+++....- +.+...+.... ..++|+ ..+.+......
T Consensus 97 ~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv 176 (366)
T COG1474 97 LGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRV 176 (366)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhh
Confidence 8622 1223444555666666654 57889999999865322 12211121111 244433 34444432210
Q ss_pred -hcCccceEEccCCCHHHHHHHHHHHhC----CCCCCcchHHHHHHHHHHhCC-chhHHHHH
Q 003203 179 -EMHSQYNYCVSVLNKEEAWSLFKKMVG----DYVEDSDLESIAIQVANECGG-LPLAIVIV 234 (839)
Q Consensus 179 -~~~~~~~~~l~~L~~~ea~~Lf~~~~~----~~~~~~~~~~~~~~I~~~~~G-~Plai~~~ 234 (839)
..-....+..+|.+.+|-.+.+..++. ....+++.-+.+..++..-+| .-.||.++
T Consensus 177 ~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 177 KSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 011123478999999999999999982 222333334444455555554 33444443
No 61
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.72 E-value=4.6e-08 Score=88.50 Aligned_cols=115 Identities=22% Similarity=0.265 Sum_probs=80.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhc---cCCeEEEEEEecCCCHHHHHHHHHHHhhhhccC-CCchHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQN---LFDQVIFVLASSTANVKRIQDEIADQLCLELCK-GTESERARTLFDRL 131 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~l 131 (839)
.+++.|+|++|+|||++++++.++..... .-..++|+++....+...+...|+.+++..... ....+....+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 47899999999999999999999875321 123577999988889999999999999887665 44555666777777
Q ss_pred HcCCcEEEEEeCCCCc-c--ccccccccCCCCCCCceEEEEeCc
Q 003203 132 WKENKILVILDDICTS-I--DLVTVGIPFGNAHRGCKILLASRY 172 (839)
Q Consensus 132 ~~~~~~LlVlDdv~~~-~--~~~~l~~~l~~~~~~s~iivTtr~ 172 (839)
.+.+..+||+||++.. . .++.+..... ..+.++|++.+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 6656679999999865 2 2233322222 567778877765
No 62
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=5e-07 Score=94.86 Aligned_cols=200 Identities=11% Similarity=0.027 Sum_probs=119.3
Q ss_pred cCCCCCccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHHHHhcc--CCeEEEEEEecCCCHHHHHH
Q 003203 29 RSNQGYKSFESRKSILCDILDWLTSPNVN-MIGVYGIGGVGKTALMHEVLFEAKKQNL--FDQVIFVLASSTANVKRIQD 105 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~ 105 (839)
..|.....++|.++..+.+...+..++.. .+.|+|+.|+||||+|..+++.+-.... +.... .......-...+
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~ 93 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWR 93 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHH
Confidence 35667788999999999999999877654 6899999999999999999988754210 11000 000110111222
Q ss_pred HHHHH-------hhhhc-------cCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccccCCCCCCCce
Q 003203 106 EIADQ-------LCLEL-------CKGTESERARTLFDRLW----KENKILVILDDICTSI--DLVTVGIPFGNAHRGCK 165 (839)
Q Consensus 106 ~i~~~-------l~~~~-------~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~ 165 (839)
.+... +.... ...-..+.+..+.+.+. .+++-++|+|+++... ..+.+...+.....+..
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~ 173 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARAL 173 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCce
Confidence 22211 10000 01112344445554443 3567789999998653 33444444433233445
Q ss_pred EEEEe-CchhhhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHH
Q 003203 166 ILLAS-RYRDILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIV 234 (839)
Q Consensus 166 iivTt-r~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 234 (839)
+|++| +...+..........+++.+++.++..+++.+...... -.++....|++.++|.|.....+
T Consensus 174 fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 174 FILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 44444 44334332333457899999999999999998542211 11344678999999999865443
No 63
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.69 E-value=3e-08 Score=101.27 Aligned_cols=286 Identities=21% Similarity=0.227 Sum_probs=183.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCC-eEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcC
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFD-QVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKE 134 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 134 (839)
.|.+.++|.|||||||++-++.. .+.. |. .+.++...+..+...+.-.....++....+.. .....+..+.. +
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~-~~~~--~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~--~~~~~~~~~~~-~ 87 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH-AASE--YADGVAFVDLAPITDPALVFPTLAGALGLHVQPGD--SAVDTLVRRIG-D 87 (414)
T ss_pred hheeeeeccCccceehhhhhhHh-Hhhh--cccceeeeeccccCchhHhHHHHHhhcccccccch--HHHHHHHHHHh-h
Confidence 47899999999999999999998 5533 64 57777788777887777777776766543321 22224444443 6
Q ss_pred CcEEEEEeCCCCc-cccccccccCCCCCCCceEEEEeCchhhhhhhcCccceEEccCCCHH-HHHHHHHHHhCC----CC
Q 003203 135 NKILVILDDICTS-IDLVTVGIPFGNAHRGCKILLASRYRDILVSEMHSQYNYCVSVLNKE-EAWSLFKKMVGD----YV 208 (839)
Q Consensus 135 ~~~LlVlDdv~~~-~~~~~l~~~l~~~~~~s~iivTtr~~~~~~~~~~~~~~~~l~~L~~~-ea~~Lf~~~~~~----~~ 208 (839)
+|.++|+||.... ++-..+...+....+.-.|+.|+|..-. ......+.+++++.. ++.++|...+.. -.
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHHHHhcccee
Confidence 9999999998754 2223333344445566678888886642 344567778888854 899999877721 11
Q ss_pred CCcchHHHHHHHHHHhCCchhHHHHHHHHhcCCChhHHHHHHHHh----hcc---cccchHHHHhhhhccccccchhHHH
Q 003203 209 EDSDLESIAIQVANECGGLPLAIVIVARALRNKPLSEWKGALLKL----RSS---AGKLDALVYSSIELSYNYLIDQVLK 281 (839)
Q Consensus 209 ~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~~~~~w~~~l~~l----~~~---~~~~~~~~~~~l~~sy~~L~~~~lk 281 (839)
....-...+.+|.++.+|.|++|..+++..+.-...+....++.- ... ...-+....+.+..||.-|...+ +
T Consensus 164 l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe-~ 242 (414)
T COG3903 164 LTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE-R 242 (414)
T ss_pred ecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH-H
Confidence 122234568899999999999999999999887555443333332 111 11124457889999999999885 8
Q ss_pred HHHHhcccCCCCCCCcHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHhcccccCCCC--CCeEEeeehHHHHHHHh
Q 003203 282 SAFLLCGLLKHPYDASVMDLLKHGMGLGLFEGIYTMQERRDRVYALVHILKDSCLLLDGRT--EDWFSMHDIVRNVAISI 359 (839)
Q Consensus 282 ~~fl~~a~fp~~~~~~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~--~~~~~mH~lv~~~~~~~ 359 (839)
.-|--++.|...++.. ...|.+.|-.. ..........+-.+++++++...+. ...|+.-+-++.|+..+
T Consensus 243 ~~~~rLa~~~g~f~~~----l~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yalae 313 (414)
T COG3903 243 ALFGRLAVFVGGFDLG----LALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAE 313 (414)
T ss_pred HHhcchhhhhhhhccc----HHHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 8899999998544443 22333322211 0112233444556788888754422 23466666666666665
Q ss_pred hc
Q 003203 360 AS 361 (839)
Q Consensus 360 ~~ 361 (839)
..
T Consensus 314 L~ 315 (414)
T COG3903 314 LH 315 (414)
T ss_pred HH
Confidence 54
No 64
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=1.3e-07 Score=101.09 Aligned_cols=198 Identities=12% Similarity=0.082 Sum_probs=117.8
Q ss_pred cCCCCCccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHH
Q 003203 29 RSNQGYKSFESRKSILCDILDWLTSPNVN-MIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEI 107 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 107 (839)
..|....+++|.+..+..|..++..++.. .+.++|+.|+||||+|+.+++.+........ ..+.....-..+...+
T Consensus 12 yRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~sC~~i~~g~ 88 (484)
T PRK14956 12 YRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTSCLEITKGI 88 (484)
T ss_pred hCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcHHHHHHccC
Confidence 34667788999999999999999887764 5799999999999999999987653211110 0011111111111111
Q ss_pred HHHhh-hhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCc-hhhhhhh
Q 003203 108 ADQLC-LELCKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRY-RDILVSE 179 (839)
Q Consensus 108 ~~~l~-~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~-~~~~~~~ 179 (839)
...+. .+.......+.++.+.+.+. .++.-++|+|+++.. ..++++...+........+|++|.. ..+....
T Consensus 89 ~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 89 SSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred CccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH
Confidence 00000 00000111222333333222 356679999999865 4456665555433345555555554 3333323
Q ss_pred cCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhH
Q 003203 180 MHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLA 230 (839)
Q Consensus 180 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 230 (839)
......|.+.+++.++..+.+.+.+......- -++....|++.++|.+--
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~-e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENVQY-DQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCChHHH
Confidence 34456799999999999999988874322221 245678999999999853
No 65
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=5.5e-07 Score=99.17 Aligned_cols=198 Identities=13% Similarity=0.083 Sum_probs=117.4
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHH
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNVN-MIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIA 108 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 108 (839)
.|....+++|.+...+.|..++..++.. .+.++|++|+||||+|+.+++.+...+.+...+|.+.+... +.......+
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv 87 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDV 87 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCce
Confidence 3556678999999999999999877654 55999999999999999999987643322222332221100 000000000
Q ss_pred HHhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCch-hhhhhhcC
Q 003203 109 DQLCLELCKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRYR-DILVSEMH 181 (839)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~-~~~~~~~~ 181 (839)
..+.. ......+.++.+.+.+. .+++-++|+|+++.. ..++.+...+........+|++|... .+......
T Consensus 88 ~el~~--~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 88 LEIDA--ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred EEecc--cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc
Confidence 00000 00111222222322221 246678999999855 34555555555444555666665543 33322233
Q ss_pred ccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHH
Q 003203 182 SQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAI 231 (839)
Q Consensus 182 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 231 (839)
....+++.+++.++..+.+.+.+....... .++....|++.++|.+--+
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~i-~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGREA-EPEALQLVARLADGAMRDA 214 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 456899999999999999999873322221 2456789999999988644
No 66
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.68 E-value=5.4e-07 Score=98.69 Aligned_cols=180 Identities=14% Similarity=0.150 Sum_probs=117.1
Q ss_pred cCCCCCccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHHHHhccC---------------------
Q 003203 29 RSNQGYKSFESRKSILCDILDWLTSPNV-NMIGVYGIGGVGKTALMHEVLFEAKKQNLF--------------------- 86 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f--------------------- 86 (839)
..|....+++|.+..++.|...+..++. +.+.++|+.|+||||+|+.+++.+......
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~ 94 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNH 94 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcC
Confidence 3466778899999999999998876654 578899999999999999999887532211
Q ss_pred --CeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCC
Q 003203 87 --DQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFG 158 (839)
Q Consensus 87 --~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~ 158 (839)
..++.++......+ +.++.+.+... .+++-++|+|+++.. ..++.+...+.
T Consensus 95 ~h~Dv~eidaas~~~v---------------------d~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LE 153 (507)
T PRK06645 95 NHPDIIEIDAASKTSV---------------------DDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLE 153 (507)
T ss_pred CCCcEEEeeccCCCCH---------------------HHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHh
Confidence 01122222221222 22222222221 246778999999865 34666665555
Q ss_pred CCCCCceEEEEe-CchhhhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhH
Q 003203 159 NAHRGCKILLAS-RYRDILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLA 230 (839)
Q Consensus 159 ~~~~~s~iivTt-r~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 230 (839)
...+.+.+|++| +...+..........+++.+++.++..+.+.+.+......-+ .+....|++.++|.+--
T Consensus 154 epp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie-~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 154 EPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD-IEALRIIAYKSEGSARD 225 (507)
T ss_pred hcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHH
Confidence 545566666554 444444322334568999999999999999998844332222 34567899999997743
No 67
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=7.2e-07 Score=98.30 Aligned_cols=188 Identities=16% Similarity=0.143 Sum_probs=117.7
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHHHHhc-------------------cCCeE
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNV-NMIGVYGIGGVGKTALMHEVLFEAKKQN-------------------LFDQV 89 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~ 89 (839)
.|....+++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+++.+.... .|...
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 456778899999999999999987665 4578999999999999999998764211 12233
Q ss_pred EEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccccCCCCCCCceEE
Q 003203 90 IFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS--IDLVTVGIPFGNAHRGCKIL 167 (839)
Q Consensus 90 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ii 167 (839)
+++.......+.++ +++.+.+ ...-..+++-++|+|+++.. ...+.+...+......+.+|
T Consensus 91 ieidaas~~gvd~i-r~ii~~~----------------~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fI 153 (546)
T PRK14957 91 IEIDAASRTGVEET-KEILDNI----------------QYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFI 153 (546)
T ss_pred EEeecccccCHHHH-HHHHHHH----------------HhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEE
Confidence 33333222222221 1222111 00111356779999999855 34555555555444566666
Q ss_pred EEeCch-hhhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchh-HHHHHH
Q 003203 168 LASRYR-DILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPL-AIVIVA 235 (839)
Q Consensus 168 vTtr~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~~ 235 (839)
++|.+. .+..........+++++++.++..+.+.+.+....... -++....|++.++|.+- |+..+-
T Consensus 154 L~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~-e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 154 LATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINS-DEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 555543 33332234467899999999999999888763322221 24456789999999664 444443
No 68
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.67 E-value=1.3e-09 Score=113.90 Aligned_cols=184 Identities=22% Similarity=0.339 Sum_probs=143.6
Q ss_pred eEEecCCCCCCCCCCC---CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCC
Q 003203 388 AVFLNDIKTGVLPEGL---EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQC 464 (839)
Q Consensus 388 ~l~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~ 464 (839)
++.+++.+...+|... .+.--...+++.|.. ..+|..+ +.+..|..|.|+.|.+..+|..++++..|.+|+|+.|
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~-~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRF-SELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhcccccc-ccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc
Confidence 4566666666666432 444455667777763 5677665 6678889999999999999999999999999999999
Q ss_pred CcCC-CcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccc
Q 003203 465 VVGD-ISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGL 543 (839)
Q Consensus 465 ~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~ 543 (839)
++.. |..++.| -|+.|-+++|+++.+|..++.+..|.+|+.+.|. +..+|.. ++.+.+|+.|.+..|.+.
T Consensus 132 qlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~------ 202 (722)
T KOG0532|consen 132 QLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE------ 202 (722)
T ss_pred hhhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh------
Confidence 8888 5566655 4899999999999999999988999999999887 7888887 899999999999888765
Q ss_pred cccccccchhhhccCCCCCEEEEEeccccCCCccccc-cccceEEEE
Q 003203 544 NIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFS-KKLERYKIY 589 (839)
Q Consensus 544 ~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~l~l~ 589 (839)
..++++..|+ |..|++++|.+..+|-.+.. +.|+.+.+.
T Consensus 203 ------~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 203 ------DLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred ------hCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeec
Confidence 3456677554 88999999999999866543 555555554
No 69
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=4.7e-09 Score=106.56 Aligned_cols=80 Identities=23% Similarity=0.273 Sum_probs=33.5
Q ss_pred CCCccEEEeCCCccc--ccCccccCCCCCcEEEccCCC-cCC-CcccCCCCCCCEEEccCCCCCCCc--hhhcCCCccCe
Q 003203 430 MSKLRGLALSEMQLL--SLPPSVHLLSNLQTLCLDQCV-VGD-ISIIGNLKKLEILSLVDSDIERLP--NEIGQLTQLRC 503 (839)
Q Consensus 430 l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~-~~~-~~~~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~ 503 (839)
+++|+.|.+++|+++ ++-.....+++|+.|+|.+|. +.. -.....++.|+.|||++|.+..++ .-++.++.|..
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 444444555555444 222223334444455554442 111 122233444445555554444333 22344444444
Q ss_pred EecCCC
Q 003203 504 LDLSFC 509 (839)
Q Consensus 504 L~l~~~ 509 (839)
|+++.|
T Consensus 276 Lnls~t 281 (505)
T KOG3207|consen 276 LNLSST 281 (505)
T ss_pred hhcccc
Confidence 444444
No 70
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=6.1e-07 Score=94.18 Aligned_cols=176 Identities=15% Similarity=0.168 Sum_probs=116.2
Q ss_pred ccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHHHH----hccCCeEEEEEE-ecCCCHHHHHHHHH
Q 003203 35 KSFESRKSILCDILDWLTSPNV-NMIGVYGIGGVGKTALMHEVLFEAKK----QNLFDQVIFVLA-SSTANVKRIQDEIA 108 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~----~~~f~~~~wv~~-~~~~~~~~~~~~i~ 108 (839)
.+++|.+...+.+.+++..++. ....++|+.|+||||+|+.+++.+-. ..|.|...|... +......++ +++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHH
Confidence 4678999999999999987665 46689999999999999999987632 245555555432 222222222 2222
Q ss_pred HHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCC--ccccccccccCCCCCCCceEEEEeCchhhh-hhhcCccce
Q 003203 109 DQLCLELCKGTESERARTLFDRLWKENKILVILDDICT--SIDLVTVGIPFGNAHRGCKILLASRYRDIL-VSEMHSQYN 185 (839)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~s~iivTtr~~~~~-~~~~~~~~~ 185 (839)
+.+... .. .+++-++|+|+++. ...++.+...+....+++.+|++|.+.+.. ..-......
T Consensus 83 ~~~~~~---------------p~-~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 83 EEVNKK---------------PY-EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHHhcC---------------cc-cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 222110 01 24556677777654 456777777777667788888888766533 222334578
Q ss_pred EEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHH
Q 003203 186 YCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIV 232 (839)
Q Consensus 186 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 232 (839)
+++.++++++..+.+.+.... . .++.++.++..++|.|..+.
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~-~----~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYND-I----KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhcC-C----CHHHHHHHHHHcCCCHHHHH
Confidence 999999999999988876531 1 12336788999999987554
No 71
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=7e-07 Score=94.32 Aligned_cols=200 Identities=12% Similarity=-0.013 Sum_probs=119.7
Q ss_pred cCCCCCccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEE----EEEEecCCCHHHH
Q 003203 29 RSNQGYKSFESRKSILCDILDWLTSPNVN-MIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVI----FVLASSTANVKRI 103 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~----wv~~~~~~~~~~~ 103 (839)
..|....+++|.++..+.+.+.+..++.. .+.++|+.|+||+|+|..+++.+-.+....... -.++..+.. -..
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~-c~~ 91 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPD-HPV 91 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCC-ChH
Confidence 35566678999999999999999887755 588999999999999999998875332111000 000000000 001
Q ss_pred HHHHHHHh-------hhh--c-----cCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCCCC
Q 003203 104 QDEIADQL-------CLE--L-----CKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAHRG 163 (839)
Q Consensus 104 ~~~i~~~l-------~~~--~-----~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~ 163 (839)
-+.+...- ... . ...-..+.++.+.+.+. .+++.++|+||++.. .....+...+..-..+
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 11111000 000 0 01112344555554443 256778999999865 3344444444433345
Q ss_pred ceEEEEeCchh-hhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHH
Q 003203 164 CKILLASRYRD-ILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIV 234 (839)
Q Consensus 164 s~iivTtr~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 234 (839)
+.+|++|.+.. +..........+.+.+++.++..+++.+..+... ++....+++.++|.|.....+
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-----~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-----DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-----HHHHHHHHHHcCCCHHHHHHH
Confidence 66777776654 3333344567899999999999999988763311 122367899999999865444
No 72
>PF13173 AAA_14: AAA domain
Probab=98.63 E-value=9.7e-08 Score=85.47 Aligned_cols=119 Identities=16% Similarity=0.178 Sum_probs=80.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCc
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENK 136 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (839)
+++.|.|+.|+||||++++++++.. ....+++++............+ ....+.+. ..+++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~----------------~~~~~~~~-~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD----------------LLEYFLEL-IKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh----------------hHHHHHHh-hccCC
Confidence 6899999999999999999998875 2345777766654321111000 11122222 22478
Q ss_pred EEEEEeCCCCccccccccccCCCCCCCceEEEEeCchhhhhhh-----cCccceEEccCCCHHH
Q 003203 137 ILVILDDICTSIDLVTVGIPFGNAHRGCKILLASRYRDILVSE-----MHSQYNYCVSVLNKEE 195 (839)
Q Consensus 137 ~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~~~~~~-----~~~~~~~~l~~L~~~e 195 (839)
.+|++|++....+|......+.+..+..+|++|+......... .+....+++.||+-.|
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred cEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 8999999998877777666665555678999999987765311 1223578999999776
No 73
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.63 E-value=2.6e-07 Score=85.66 Aligned_cols=123 Identities=17% Similarity=0.181 Sum_probs=75.1
Q ss_pred cchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccC
Q 003203 38 ESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCK 117 (839)
Q Consensus 38 vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 117 (839)
+||+..++++...+..+..+.+.|+|++|+|||++|+++++..... -..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 4788999999999887666889999999999999999999988632 2346666655443322211111100
Q ss_pred CCchHHHHHHHHHHHcCCcEEEEEeCCCCc-----cccccccccCCC---CCCCceEEEEeCchh
Q 003203 118 GTESERARTLFDRLWKENKILVILDDICTS-----IDLVTVGIPFGN---AHRGCKILLASRYRD 174 (839)
Q Consensus 118 ~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~-----~~~~~l~~~l~~---~~~~s~iivTtr~~~ 174 (839)
............++.++|+||++.. ..+......+.. ...+.++|+||....
T Consensus 72 -----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111111347789999999853 122222222211 136778888888664
No 74
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=7.1e-06 Score=84.96 Aligned_cols=207 Identities=15% Similarity=0.140 Sum_probs=135.9
Q ss_pred CCccccchHHHHHHHHHHhc----CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHH
Q 003203 33 GYKSFESRKSILCDILDWLT----SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIA 108 (839)
Q Consensus 33 ~~~~fvgR~~~~~~l~~~l~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 108 (839)
.+...+||+.|++.+.+++. .+..+.+.|.|-+|.|||.+...++.+......-..+++++...-.....++..|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 34678999999999999986 34567899999999999999999999876432223467888777677888888888
Q ss_pred HHhhhhccC-CCchHHHHHHHHHHHcCC-cEEEEEeCCCCcc--ccccccccCCC-CCCCceEEEEeCchhh--------
Q 003203 109 DQLCLELCK-GTESERARTLFDRLWKEN-KILVILDDICTSI--DLVTVGIPFGN-AHRGCKILLASRYRDI-------- 175 (839)
Q Consensus 109 ~~l~~~~~~-~~~~~~~~~~~~~l~~~~-~~LlVlDdv~~~~--~~~~l~~~l~~-~~~~s~iivTtr~~~~-------- 175 (839)
+.+...... ....+....+.++..+.+ .+++|+|.++... .-..+...|.+ .-+++|+|+.--...+
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLP 307 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhh
Confidence 877332222 222333444455554444 6899999998542 11222223322 2366776654322221
Q ss_pred -hhh-hcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHHHHhc
Q 003203 176 -LVS-EMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVARALR 239 (839)
Q Consensus 176 -~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~ 239 (839)
+.. ..-....+..+|.+.++-.++|..+.............++-+++++.|.---+..+-.+.+
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 111 1122567889999999999999999966555555555667777777666555555444444
No 75
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=7.3e-07 Score=98.19 Aligned_cols=185 Identities=14% Similarity=0.139 Sum_probs=114.5
Q ss_pred cCCCCCccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHHHHhccCC-------------------e
Q 003203 29 RSNQGYKSFESRKSILCDILDWLTSPNV-NMIGVYGIGGVGKTALMHEVLFEAKKQNLFD-------------------Q 88 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~-------------------~ 88 (839)
..|....+++|++..++.+.+++..++. +.+.++|+.|+||||+|+.+++.+....+.. .
T Consensus 10 yRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~D 89 (605)
T PRK05896 10 YRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVD 89 (605)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCc
Confidence 3466778899999999999999976654 4688999999999999999998875322111 1
Q ss_pred EEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCCC
Q 003203 89 VIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAHR 162 (839)
Q Consensus 89 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~ 162 (839)
+++++.+.... .+.++.+.+... .+++-++|+|+++.. .....+...+.....
T Consensus 90 iieIdaas~ig---------------------Vd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~ 148 (605)
T PRK05896 90 IVELDAASNNG---------------------VDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPK 148 (605)
T ss_pred eEEeccccccC---------------------HHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCC
Confidence 22222111111 122222222221 124446999999764 344555554443334
Q ss_pred CceEEEEeCch-hhhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchh-HHHHHH
Q 003203 163 GCKILLASRYR-DILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPL-AIVIVA 235 (839)
Q Consensus 163 ~s~iivTtr~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~~ 235 (839)
...+|++|... .+..........+++.+++.++....+.+.+......-+ .+.+..+++.++|.+- |+..+-
T Consensus 149 ~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is-~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 149 HVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE-DNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred cEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCcHHHHHHHHH
Confidence 55565555443 333322344568999999999999999987733221111 3457789999999664 444443
No 76
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=8.6e-07 Score=99.24 Aligned_cols=182 Identities=15% Similarity=0.153 Sum_probs=116.7
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHHHHhcc-------------------CCeE
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNVN-MIGVYGIGGVGKTALMHEVLFEAKKQNL-------------------FDQV 89 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------f~~~ 89 (839)
.|....++||.+..++.|.+.+..++.. .+.++|+.|+||||+|+.+++.+..... |..+
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 3567788999999999999999877664 4689999999999999999988754211 1111
Q ss_pred EEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCCCC
Q 003203 90 IFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAHRG 163 (839)
Q Consensus 90 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~ 163 (839)
+.++..... ..+.++.+.+.+. .+++-++|+|+++.. ...+.+...+..-...
T Consensus 91 ieidaas~~---------------------~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~ 149 (647)
T PRK07994 91 IEIDAASRT---------------------KVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 (647)
T ss_pred eeecccccC---------------------CHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCC
Confidence 222221111 1222233332221 356779999999865 3445554444443455
Q ss_pred ceEEEEeCchh-hhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHH
Q 003203 164 CKILLASRYRD-ILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVI 233 (839)
Q Consensus 164 s~iivTtr~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 233 (839)
.++|++|.+.. +..........|++++++.++..+.+.+.+....... -++....|++.++|.+-.+..
T Consensus 150 v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~-e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 150 VKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF-EPRALQLLARAADGSMRDALS 219 (647)
T ss_pred eEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 66666665544 3322233467899999999999999998773322221 234567899999998764333
No 77
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.60 E-value=1.2e-07 Score=91.62 Aligned_cols=48 Identities=25% Similarity=0.326 Sum_probs=35.3
Q ss_pred cccchHHHHHHHHHHhc---CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 36 SFESRKSILCDILDWLT---SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 36 ~fvgR~~~~~~l~~~l~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
.|+||+++++++.+.+. ....+.+.|+|++|+|||+|+++++.+....
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999993 4456899999999999999999999998876
No 78
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=1.4e-06 Score=94.70 Aligned_cols=183 Identities=15% Similarity=0.169 Sum_probs=119.6
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHHHHh-------------------ccCCeE
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNVN-MIGVYGIGGVGKTALMHEVLFEAKKQ-------------------NLFDQV 89 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~-------------------~~f~~~ 89 (839)
.|....+++|.+..++.|.+++..++.. .+.++|+.|+||||+|+.+++.+... ..+..+
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 4567788999999999999998877765 78999999999999999998764211 112224
Q ss_pred EEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccccCCCCCCCceEE
Q 003203 90 IFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS--IDLVTVGIPFGNAHRGCKIL 167 (839)
Q Consensus 90 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ii 167 (839)
+.++.+....+.++ +++.+..... -. .+++-++|+|+++.. ...+.+...+..-.+.+++|
T Consensus 88 ~eidaas~~~vddI-R~Iie~~~~~---------------P~-~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDDI-KVILENSCYL---------------PI-SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHHH-HHHHHHHHhc---------------cc-cCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 45554443333332 2222211100 00 245668999999755 34555655555555667777
Q ss_pred EEeCc-hhhhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhH
Q 003203 168 LASRY-RDILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLA 230 (839)
Q Consensus 168 vTtr~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 230 (839)
++|.. ..+..........+++++++.++..+.+.+.+......-+ ++..+.|++.++|.+-.
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~-~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD-EESLKLIAENSSGSMRN 213 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHH
Confidence 66654 3443323444678999999999999999998854332222 44577899999998754
No 79
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.60 E-value=4.4e-08 Score=107.28 Aligned_cols=157 Identities=27% Similarity=0.376 Sum_probs=76.8
Q ss_pred CCCCccEEeecCCCCCCCCChhhhcCCC-CccEEEeCCCcccccCccccCCCCCcEEEccCCCcCCCccc-CCCCCCCEE
Q 003203 404 EYPQLDFFCMNSKDPFFKMPENFFTGMS-KLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGDISII-GNLKKLEIL 481 (839)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~L~~L 481 (839)
..+.+..|.+.++.. ..++... ..+. +|+.|++++|.+..+|..++.+++|+.|+++.|.+.+++.. +.+.+|+.|
T Consensus 114 ~~~~l~~L~l~~n~i-~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 114 ELTNLTSLDLDNNNI-TDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cccceeEEecCCccc-ccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 334455555544442 3333322 2232 55555555555555555555555555555555555553222 255555555
Q ss_pred EccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccccccccchhhhccCCCC
Q 003203 482 SLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQL 561 (839)
Q Consensus 482 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L 561 (839)
++++|++..+|..+..+..|++|.+++|..+. .+.. +.++.++..|.+.++.+. ..+..++.+++|
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-~~~~-~~~~~~l~~l~l~~n~~~------------~~~~~~~~l~~l 257 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNSIIE-LLSS-LSNLKNLSGLELSNNKLE------------DLPESIGNLSNL 257 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCccee-cchh-hhhcccccccccCCceee------------eccchhcccccc
Confidence 55555555555554444555555555543222 2222 455555555554444432 112334555556
Q ss_pred CEEEEEeccccCCCc
Q 003203 562 TTLEIQIQDAMILPK 576 (839)
Q Consensus 562 ~~L~l~~~~~~~~~~ 576 (839)
+.|++++|.+..++.
T Consensus 258 ~~L~~s~n~i~~i~~ 272 (394)
T COG4886 258 ETLDLSNNQISSISS 272 (394)
T ss_pred ceecccccccccccc
Confidence 666666655555554
No 80
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.59 E-value=3.9e-08 Score=107.66 Aligned_cols=177 Identities=25% Similarity=0.311 Sum_probs=148.1
Q ss_pred cccceEEecCCCCCCCCCCCCCC--CccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEc
Q 003203 384 KNCSAVFLNDIKTGVLPEGLEYP--QLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCL 461 (839)
Q Consensus 384 ~~~~~l~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l 461 (839)
..+..+.+..+.+..+|...... +|+.|+++++.. ..++.. ...+++|+.|+++.|.+.++|...+.+++|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccch-hhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 46889999999999999888664 899999999874 555433 37899999999999999999998889999999999
Q ss_pred cCCCcCCCccc-CCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcccccc
Q 003203 462 DQCVVGDISII-GNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEF 540 (839)
Q Consensus 462 ~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 540 (839)
++|.+..++.. +.+.+|++|.+++|.+...+..+.++.++..|.+.++. +..++.. ++.+++|+.|++++|.+.
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~s~n~i~--- 268 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDLSNNQIS--- 268 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hccccccceecccccccc---
Confidence 99999996544 67777999999999888888889999999999988765 5555554 889999999999999875
Q ss_pred ccccccccccchhhhccCCCCCEEEEEeccccCCCcc
Q 003203 541 EGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKG 577 (839)
Q Consensus 541 ~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~ 577 (839)
.+..+..+.+|+.|+++++.....+..
T Consensus 269 ----------~i~~~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 269 ----------SISSLGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ----------ccccccccCccCEEeccCccccccchh
Confidence 223388899999999999887765543
No 81
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.59 E-value=1.7e-06 Score=93.20 Aligned_cols=187 Identities=15% Similarity=0.123 Sum_probs=116.2
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHHHHhc--------------------cCCe
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNV-NMIGVYGIGGVGKTALMHEVLFEAKKQN--------------------LFDQ 88 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~--------------------~f~~ 88 (839)
.|.....++|.++.++.+.+++..++. ..+.++|++|+||||+|+.++....... +++
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~- 87 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD- 87 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-
Confidence 456667899999999999999987664 4678999999999999999998864321 122
Q ss_pred EEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccccCCCCCCCceE
Q 003203 89 VIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS--IDLVTVGIPFGNAHRGCKI 166 (839)
Q Consensus 89 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~i 166 (839)
+++++.+....... .+++...+... .. .+++-++|+|+++.. .....+...+......+.+
T Consensus 88 ~~~~~~~~~~~~~~-~~~l~~~~~~~---------------p~-~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 88 VIEIDAASNNGVDD-IREILDNVKYA---------------PS-SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred EEEeeccccCCHHH-HHHHHHHHhcC---------------cc-cCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 22332221111111 12222211100 00 235568899998755 3344554555444456677
Q ss_pred EEEeCchh-hhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHH
Q 003203 167 LLASRYRD-ILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVA 235 (839)
Q Consensus 167 ivTtr~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 235 (839)
|++|.+.. +..........++++++++++..+++...+......- .++.+..+++.++|.|..+....
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i-~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI-EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCChHHHHHHH
Confidence 77776554 2222223356789999999999999998773322111 14567889999999987654443
No 82
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.58 E-value=2.6e-07 Score=90.09 Aligned_cols=192 Identities=15% Similarity=0.131 Sum_probs=130.8
Q ss_pred cCccccCCCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCe-EEEEEEecCCCHHH
Q 003203 24 KDMWLRSNQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQ-VIFVLASSTANVKR 102 (839)
Q Consensus 24 ~~~~~~~~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~ 102 (839)
++.....|....+++|.+..++-|.+.+.....+....+||+|.|||+-|..++..+-..+.|.+ +.-.++|......-
T Consensus 25 swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisv 104 (346)
T KOG0989|consen 25 SWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISV 104 (346)
T ss_pred chHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccc
Confidence 34445677788999999999999999999877899999999999999999999998876566665 44466666554332
Q ss_pred HHHHHH--HHhhhhccCCCchHHHHHHHHHHH-cCCc-EEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCchhhh
Q 003203 103 IQDEIA--DQLCLELCKGTESERARTLFDRLW-KENK-ILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRYRDIL 176 (839)
Q Consensus 103 ~~~~i~--~~l~~~~~~~~~~~~~~~~~~~l~-~~~~-~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~~~~ 176 (839)
+-..+- +++..... +... .-++ -.||||+++.. +.|.+++..+......++.|+.+......
T Consensus 105 vr~Kik~fakl~~~~~------------~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsri 172 (346)
T KOG0989|consen 105 VREKIKNFAKLTVLLK------------RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRI 172 (346)
T ss_pred hhhhhcCHHHHhhccc------------cccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhC
Confidence 211111 11111100 0000 0133 47889999876 67888877777777778877766655433
Q ss_pred h-hhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCch
Q 003203 177 V-SEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLP 228 (839)
Q Consensus 177 ~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~P 228 (839)
. ........|+.++|.+++...-++..+.++...-+ .+..+.|++.++|-=
T Consensus 173 i~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d-~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 173 IRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID-DDALKLIAKISDGDL 224 (346)
T ss_pred ChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcH
Confidence 2 12233567899999999999999998854443333 345778999998853
No 83
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.58 E-value=6.7e-07 Score=102.34 Aligned_cols=175 Identities=16% Similarity=0.170 Sum_probs=104.4
Q ss_pred cCCCCCccccchHHHHH---HHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHH
Q 003203 29 RSNQGYKSFESRKSILC---DILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQD 105 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~---~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 105 (839)
..|...++|+|++..+. .+.+.+..+....+.|+|++|+||||+|+.+++.... +|. .++.+. ....++ +
T Consensus 22 ~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~--~f~---~lna~~-~~i~di-r 94 (725)
T PRK13341 22 LRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRA--HFS---SLNAVL-AGVKDL-R 94 (725)
T ss_pred cCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcC--cce---eehhhh-hhhHHH-H
Confidence 44677788999998874 5777777777778899999999999999999987642 231 111110 011111 1
Q ss_pred HHHHHhhhhccCCCchHHHHHHHHHHH-cCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCchh----hhhh
Q 003203 106 EIADQLCLELCKGTESERARTLFDRLW-KENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRYRD----ILVS 178 (839)
Q Consensus 106 ~i~~~l~~~~~~~~~~~~~~~~~~~l~-~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~~----~~~~ 178 (839)
++. ......+. .+++.++|+||++.. .+.+.+...+ ..|..++++++++. +...
T Consensus 95 ~~i----------------~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 95 AEV----------------DRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKA 155 (725)
T ss_pred HHH----------------HHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhH
Confidence 111 11111111 246789999999754 3344443322 23555555433222 1111
Q ss_pred hcCccceEEccCCCHHHHHHHHHHHhCC------CCCCcchHHHHHHHHHHhCCchh
Q 003203 179 EMHSQYNYCVSVLNKEEAWSLFKKMVGD------YVEDSDLESIAIQVANECGGLPL 229 (839)
Q Consensus 179 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~------~~~~~~~~~~~~~I~~~~~G~Pl 229 (839)
.......+++++++.++...++.+.+.+ .....-.++..+.|++.++|..-
T Consensus 156 L~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 156 LVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 1223467999999999999999887731 11111225567889999988754
No 84
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.58 E-value=8.4e-07 Score=98.71 Aligned_cols=180 Identities=10% Similarity=0.138 Sum_probs=114.2
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHHHHhcc-------------------CCeE
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNVN-MIGVYGIGGVGKTALMHEVLFEAKKQNL-------------------FDQV 89 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------f~~~ 89 (839)
.|....+++|.+..++.|.+++..++.. .+.++|+.|+||||+|+.+++.+..... |..+
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 4667788999999999999999877654 6799999999999999999887543211 1111
Q ss_pred EEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHH----HcCCcEEEEEeCCCCcc--ccccccccCCCCCCC
Q 003203 90 IFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRL----WKENKILVILDDICTSI--DLVTVGIPFGNAHRG 163 (839)
Q Consensus 90 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l----~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~ 163 (839)
+.++......+ +.++.++... ..+++-++|+|+++... ....+...+......
T Consensus 91 lEidaAs~~gV---------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~ 149 (709)
T PRK08691 91 LEIDAASNTGI---------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (709)
T ss_pred EEEeccccCCH---------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence 22222221111 2222222211 12466789999998653 233444444333355
Q ss_pred ceEEEEeCchh-hhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHH
Q 003203 164 CKILLASRYRD-ILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAI 231 (839)
Q Consensus 164 s~iivTtr~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 231 (839)
+++|++|.+.. +..........+++++++.++..+.+.+.+......- -.+....|++.++|.+.-+
T Consensus 150 v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i-d~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 150 VKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY-EPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred cEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHhCCCHHHH
Confidence 67777765543 3322223346788999999999999998884332222 1445789999999988543
No 85
>PF14516 AAA_35: AAA-like domain
Probab=98.57 E-value=2.6e-05 Score=82.05 Aligned_cols=204 Identities=13% Similarity=0.152 Sum_probs=124.9
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC-----CCHHHHH
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST-----ANVKRIQ 104 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~ 104 (839)
.+.+..-.|+|...-+++.+.+.+++ ..+.|.|+-.+|||+|..++.+..+.+ .+ .++++++... .+...++
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~~G-~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQPG-SYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhcCC-CEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHH
Confidence 45566667899977778888877643 689999999999999999999988764 23 4567777642 2455566
Q ss_pred HHHHHHhhhhccCC------------CchHHHHHHHHHHHc--CCcEEEEEeCCCCccc--------cccccccCCCC--
Q 003203 105 DEIADQLCLELCKG------------TESERARTLFDRLWK--ENKILVILDDICTSID--------LVTVGIPFGNA-- 160 (839)
Q Consensus 105 ~~i~~~l~~~~~~~------------~~~~~~~~~~~~l~~--~~~~LlVlDdv~~~~~--------~~~l~~~l~~~-- 160 (839)
+.++..+....... ........+.+.+.. +++.+|++|+|+..-. +..++......
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 65555554332111 111222223333332 5899999999985421 11111111100
Q ss_pred --CCC-ce-EEEEeCchhhh----hhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHH
Q 003203 161 --HRG-CK-ILLASRYRDIL----VSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIV 232 (839)
Q Consensus 161 --~~~-s~-iivTtr~~~~~----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 232 (839)
... -+ |++.+...... .+.......++|++++.+|..+|..++... .. ....++|...+||+|..+.
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-~~----~~~~~~l~~~tgGhP~Lv~ 237 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-FS----QEQLEQLMDWTGGHPYLVQ 237 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-CC----HHHHHHHHHHHCCCHHHHH
Confidence 011 12 22222111111 111122457899999999999999887533 11 2238899999999999999
Q ss_pred HHHHHhcCC
Q 003203 233 IVARALRNK 241 (839)
Q Consensus 233 ~~~~~L~~~ 241 (839)
.++..+...
T Consensus 238 ~~~~~l~~~ 246 (331)
T PF14516_consen 238 KACYLLVEE 246 (331)
T ss_pred HHHHHHHHc
Confidence 999999765
No 86
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.57 E-value=1.4e-06 Score=86.90 Aligned_cols=178 Identities=15% Similarity=0.125 Sum_probs=106.6
Q ss_pred CCCCCcccc-c-hHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHH
Q 003203 30 SNQGYKSFE-S-RKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEI 107 (839)
Q Consensus 30 ~~~~~~~fv-g-R~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 107 (839)
+....++|+ | -...+..+.++......+.+.|+|+.|+|||+||+.+++....+ -..+.|+++..... .
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~---~---- 87 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW---F---- 87 (235)
T ss_pred CcCCccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh---h----
Confidence 334445666 4 33455556555555555789999999999999999999987643 34566776543110 0
Q ss_pred HHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc---ccccc-ccccCCC-CCCC-ceEEEEeCchhhh-----
Q 003203 108 ADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS---IDLVT-VGIPFGN-AHRG-CKILLASRYRDIL----- 176 (839)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~---~~~~~-l~~~l~~-~~~~-s~iivTtr~~~~~----- 176 (839)
.....+.+. +--++++||++.. .+|+. +...+.. ...| .++|+||+.....
T Consensus 88 ----------------~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~ 149 (235)
T PRK08084 88 ----------------VPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGL 149 (235)
T ss_pred ----------------hHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCccc
Confidence 001122221 1247889999753 22322 1122221 1123 4789999865322
Q ss_pred ---hhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHH
Q 003203 177 ---VSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVA 235 (839)
Q Consensus 177 ---~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 235 (839)
.+......+++++++++++-.+++++++.... -.-.+++.+-|++.+.|..-++..+-
T Consensus 150 ~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~-~~l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 150 PDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG-FELPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCHHHHHHHH
Confidence 12233446899999999999999988773321 22235678888888888766554443
No 87
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=8.7e-07 Score=97.91 Aligned_cols=184 Identities=13% Similarity=0.122 Sum_probs=117.6
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHHHHhcc-------------------CCeE
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNVN-MIGVYGIGGVGKTALMHEVLFEAKKQNL-------------------FDQV 89 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------f~~~ 89 (839)
.|....++||.+..++.|.+++..++.. .+.++|+.|+||||+|+.+++.+..... |..+
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 4667788999999999999999877665 4689999999999999999988743221 2223
Q ss_pred EEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccccCCCCCCCceEE
Q 003203 90 IFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS--IDLVTVGIPFGNAHRGCKIL 167 (839)
Q Consensus 90 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ii 167 (839)
+.++.+....+.++ +++.+.+... -..++.-++|+|+++.. ...+.+...+......+++|
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 44443333333332 2222221110 01246668899999865 34555555554444567777
Q ss_pred EEeCch-hhhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHH
Q 003203 168 LASRYR-DILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAI 231 (839)
Q Consensus 168 vTtr~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 231 (839)
++|.+. .+..........+++++++.++..+.+.+.+......-+ .+....|++.++|.+..+
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~-~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE-NAALDLLARAANGSVRDA 217 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCcHHHH
Confidence 766554 333222333567899999999999888887743222222 344678999999987543
No 88
>PTZ00202 tuzin; Provisional
Probab=98.56 E-value=6.8e-07 Score=92.46 Aligned_cols=166 Identities=11% Similarity=0.155 Sum_probs=104.1
Q ss_pred cCCCCCccccchHHHHHHHHHHhcC---CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHH
Q 003203 29 RSNQGYKSFESRKSILCDILDWLTS---PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQD 105 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 105 (839)
..|++...|+||+.++.+|...|.+ +..++++|.|++|+|||||++.+..... + ..++++.. +..++++
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr 327 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLR 327 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHH
Confidence 4577788999999999999999863 2246999999999999999999986553 1 13333333 6799999
Q ss_pred HHHHHhhhhccCCCchHHHHHHHHHHH----c-CCcEEEEEe--CCCCcc-ccccccccCCCCCCCceEEEEeCchhh--
Q 003203 106 EIADQLCLELCKGTESERARTLFDRLW----K-ENKILVILD--DICTSI-DLVTVGIPFGNAHRGCKILLASRYRDI-- 175 (839)
Q Consensus 106 ~i~~~l~~~~~~~~~~~~~~~~~~~l~----~-~~~~LlVlD--dv~~~~-~~~~l~~~l~~~~~~s~iivTtr~~~~-- 175 (839)
.|+.+||... .....+....+.+.+. . +++.+||+- +-.+.. .... ...+.....-+.|++----+.+
T Consensus 328 ~LL~ALGV~p-~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne-~v~la~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 328 SVVKALGVPN-VEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNE-VVALACDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred HHHHHcCCCC-cccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHH-HHHHHccchhheeeeeehHhhcch
Confidence 9999999732 2222344444444433 3 667777763 211110 0000 0012223344556654333322
Q ss_pred hhhhcCccceEEccCCCHHHHHHHHHHHh
Q 003203 176 LVSEMHSQYNYCVSVLNKEEAWSLFKKMV 204 (839)
Q Consensus 176 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 204 (839)
+......-..|.+++++.++|.++-.+..
T Consensus 406 ~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 406 ANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 22223344678999999999999887766
No 89
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.4e-06 Score=97.37 Aligned_cols=180 Identities=12% Similarity=0.133 Sum_probs=115.8
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHHHHhcc-----------------------
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNV-NMIGVYGIGGVGKTALMHEVLFEAKKQNL----------------------- 85 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----------------------- 85 (839)
.|....+++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+++.+.....
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g 90 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSG 90 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcC
Confidence 356778899999999999999987766 45689999999999999999877643211
Q ss_pred -CCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCC
Q 003203 86 -FDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFG 158 (839)
Q Consensus 86 -f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~ 158 (839)
+..+++++..... ..+.++.+.+... .++.-++|+|+|+.. ...+.+...+.
T Consensus 91 ~h~D~~eldaas~~---------------------~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLE 149 (618)
T PRK14951 91 RFVDYTELDAASNR---------------------GVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLE 149 (618)
T ss_pred CCCceeecCccccc---------------------CHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcc
Confidence 1111222221111 1222333333221 245568899999865 34555555554
Q ss_pred CCCCCceEEEEeCc-hhhhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHH
Q 003203 159 NAHRGCKILLASRY-RDILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAI 231 (839)
Q Consensus 159 ~~~~~s~iivTtr~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 231 (839)
.-....++|++|.+ ..+..........+++++++.++..+.+.+.+......-+ .+....|++.++|.+-.+
T Consensus 150 EPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie-~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 150 EPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE-PQALRLLARAARGSMRDA 222 (618)
T ss_pred cCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 44455666666544 4444333445678999999999999999988743322222 345778999999977543
No 90
>PRK08727 hypothetical protein; Validated
Probab=98.55 E-value=1.7e-06 Score=86.14 Aligned_cols=178 Identities=13% Similarity=0.090 Sum_probs=104.7
Q ss_pred ccccCCCCCccccchHHH-HHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHH
Q 003203 26 MWLRSNQGYKSFESRKSI-LCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQ 104 (839)
Q Consensus 26 ~~~~~~~~~~~fvgR~~~-~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 104 (839)
+..++....++|++.... +..+...........+.|+|++|+|||.||+.+++....+ ...+.|+++.+ ..
T Consensus 10 ~~~~~~~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~ 81 (233)
T PRK08727 10 LRYPSDQRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AA 81 (233)
T ss_pred CCCCCcCChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hh
Confidence 344444556777766543 3333333333333579999999999999999999987654 33566765322 11
Q ss_pred HHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc---ccc-cccccCCC-CCCCceEEEEeCchhhh---
Q 003203 105 DEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI---DLV-TVGIPFGN-AHRGCKILLASRYRDIL--- 176 (839)
Q Consensus 105 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~---~~~-~l~~~l~~-~~~~s~iivTtr~~~~~--- 176 (839)
..+. ...+.+ .+.-+||+||++... .+. .+...+.. ...|..||+|++...-.
T Consensus 82 ~~~~-----------------~~~~~l--~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~ 142 (233)
T PRK08727 82 GRLR-----------------DALEAL--EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLAL 142 (233)
T ss_pred hhHH-----------------HHHHHH--hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhh
Confidence 1111 122233 244589999997442 222 12211111 12466799999864321
Q ss_pred -----hhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHH
Q 003203 177 -----VSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAI 231 (839)
Q Consensus 177 -----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 231 (839)
.+.......+++++++.++-.+++++++..... .-.++...-|++.++|-.-.+
T Consensus 143 ~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l-~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 143 VLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGL-ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred hhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHH
Confidence 112223458899999999999999987733211 122456778888888765443
No 91
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.54 E-value=1.9e-06 Score=85.72 Aligned_cols=178 Identities=16% Similarity=0.174 Sum_probs=112.8
Q ss_pred CCCCCccccchHHHH---HHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHH
Q 003203 30 SNQGYKSFESRKSIL---CDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDE 106 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~---~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 106 (839)
.|....++||.+..+ .-|.+.+.++.++.+.+||++|+||||||+-+...-+.. ...||..|....-..-.++
T Consensus 133 RPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~----SyrfvelSAt~a~t~dvR~ 208 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH----SYRFVELSATNAKTNDVRD 208 (554)
T ss_pred CcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC----ceEEEEEeccccchHHHHH
Confidence 344445677776554 345666678889999999999999999999998776533 2567777765544444455
Q ss_pred HHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEE--EeCchhhh--hhhc
Q 003203 107 IADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILL--ASRYRDIL--VSEM 180 (839)
Q Consensus 107 i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iiv--Ttr~~~~~--~~~~ 180 (839)
|+++-. -...+ .++|..|++|.|..- .+-+. .++-...|.-++| ||.++..- ....
T Consensus 209 ife~aq--------------~~~~l-~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLl 270 (554)
T KOG2028|consen 209 IFEQAQ--------------NEKSL-TKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALL 270 (554)
T ss_pred HHHHHH--------------HHHhh-hcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHH
Confidence 554321 11122 468999999999743 33332 2344456776665 55555421 2124
Q ss_pred CccceEEccCCCHHHHHHHHHHHh---CCCC------CCc--ch-HHHHHHHHHHhCCchh
Q 003203 181 HSQYNYCVSVLNKEEAWSLFKKMV---GDYV------EDS--DL-ESIAIQVANECGGLPL 229 (839)
Q Consensus 181 ~~~~~~~l~~L~~~ea~~Lf~~~~---~~~~------~~~--~~-~~~~~~I~~~~~G~Pl 229 (839)
....++.+++|..++-..++.+.. ++.. ..+ .+ ..+.+-++..|+|-.-
T Consensus 271 SRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 271 SRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 456789999999999999998855 2211 111 12 2356667777888653
No 92
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=2.3e-06 Score=91.13 Aligned_cols=174 Identities=10% Similarity=0.051 Sum_probs=108.8
Q ss_pred CccccchHHHHHHHHHHhcCCC----------eeEEEEEcCCCCcHHHHHHHHHHHHHHhcc------------------
Q 003203 34 YKSFESRKSILCDILDWLTSPN----------VNMIGVYGIGGVGKTALMHEVLFEAKKQNL------------------ 85 (839)
Q Consensus 34 ~~~fvgR~~~~~~l~~~l~~~~----------~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~------------------ 85 (839)
..+++|.+..++.|.+++..+. ...+.++|+.|+|||++|..+++.+-....
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 3568999999999999998653 456889999999999999999886533210
Q ss_pred CCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccccCCC
Q 003203 86 FDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLW----KENKILVILDDICTSI--DLVTVGIPFGN 159 (839)
Q Consensus 86 f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~l~~ 159 (839)
+..+.++..... ....+.++.+.+... .+++-++|+|+++... ....+...+..
T Consensus 84 hpD~~~i~~~~~--------------------~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe 143 (394)
T PRK07940 84 HPDVRVVAPEGL--------------------SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE 143 (394)
T ss_pred CCCEEEeccccc--------------------cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc
Confidence 111222211110 011122223333221 2455688889998652 33444444444
Q ss_pred CCCCceEEEEeCchh-hhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHH
Q 003203 160 AHRGCKILLASRYRD-ILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVI 233 (839)
Q Consensus 160 ~~~~s~iivTtr~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 233 (839)
..++..+|++|.+.. +..+.......+.+++++.++..+.+.+..+- + .+.+..+++.++|.|.....
T Consensus 144 p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~---~---~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 144 PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV---D---PETARRAARASQGHIGRARR 212 (394)
T ss_pred CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC---C---HHHHHHHHHHcCCCHHHHHH
Confidence 445666666666643 33333344678999999999999999865431 1 34467899999999975433
No 93
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=1.3e-06 Score=94.61 Aligned_cols=202 Identities=11% Similarity=0.077 Sum_probs=117.0
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEE-ecCCCHHHHHHHH
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNVN-MIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLA-SSTANVKRIQDEI 107 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i 107 (839)
.|....+++|.+...+.|.+++.+++++ .+.++|+.|+||||+|..+++.+.....+....|..- ......=..-+.+
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 4566778999999999999999887765 4889999999999999999988754321111111100 0000000000000
Q ss_pred HHHhhh-----hccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccccCCCCCCCceEEEEeCc-hhh
Q 003203 108 ADQLCL-----ELCKGTESERARTLFDRLW----KENKILVILDDICTSI--DLVTVGIPFGNAHRGCKILLASRY-RDI 175 (839)
Q Consensus 108 ~~~l~~-----~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTtr~-~~~ 175 (839)
...-.. +.......+.+..+.+.+. .+.+-++|+|+++... .++.+...+....+.+.+|++|.. ..+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 000000 0000111233333333332 2456688999998653 455665555555556666666543 333
Q ss_pred hhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHH
Q 003203 176 LVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIV 232 (839)
Q Consensus 176 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 232 (839)
..........+++.++++++..+.+...+...... -.++.++.|++.++|.+--+.
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~-i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS-VDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 32222234678999999999999998887332111 124567899999999875433
No 94
>PRK09087 hypothetical protein; Validated
Probab=98.52 E-value=9.7e-07 Score=87.03 Aligned_cols=173 Identities=13% Similarity=0.075 Sum_probs=99.9
Q ss_pred ccccCCCCCccccc--hHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHH
Q 003203 26 MWLRSNQGYKSFES--RKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRI 103 (839)
Q Consensus 26 ~~~~~~~~~~~fvg--R~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 103 (839)
...++....++|+. .....-.+.+.+.....+.+.|+|++|+|||+|++.+++... ..|++.. .+
T Consensus 12 ~~~~~~~~~~~Fi~~~~N~~a~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~ 78 (226)
T PRK09087 12 FSHDPAYGRDDLLVTESNRAAVSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EI 78 (226)
T ss_pred CCCCCCCChhceeecCchHHHHHHHHhcccCCCCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------Hc
Confidence 33444455677773 233332233322222346789999999999999998886542 1243221 11
Q ss_pred HHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc-ccccccccCCC-CCCCceEEEEeCchhh------
Q 003203 104 QDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI-DLVTVGIPFGN-AHRGCKILLASRYRDI------ 175 (839)
Q Consensus 104 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~-~~~~l~~~l~~-~~~~s~iivTtr~~~~------ 175 (839)
..++.. .+.. -+|++||++... .-+.+...+.. ...|..+|+|++....
T Consensus 79 ~~~~~~--------------------~~~~---~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~ 135 (226)
T PRK09087 79 GSDAAN--------------------AAAE---GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKL 135 (226)
T ss_pred chHHHH--------------------hhhc---CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhcccc
Confidence 111111 1111 278889996431 11222222221 2346778888875322
Q ss_pred --hhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHH
Q 003203 176 --LVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVA 235 (839)
Q Consensus 176 --~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 235 (839)
..+.......+++++++.++-.+++++++.... -.-.+++.+-|++.+.|..-++..+.
T Consensus 136 ~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~-~~l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 136 PDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQ-LYVDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred ccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 122344567899999999999999999994421 12225678888888888877665433
No 95
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=2e-06 Score=95.44 Aligned_cols=187 Identities=12% Similarity=0.105 Sum_probs=117.8
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCC-eeEEEEEcCCCCcHHHHHHHHHHHHHHhccC-------------------CeE
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPN-VNMIGVYGIGGVGKTALMHEVLFEAKKQNLF-------------------DQV 89 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f-------------------~~~ 89 (839)
.|....+++|.+..++.|.+++..++ ...+.++|+.|+||||+|+.+++.+...... ..+
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv 90 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV 90 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce
Confidence 45667789999999999999988766 4678899999999999999999887532111 012
Q ss_pred EEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCCCC
Q 003203 90 IFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAHRG 163 (839)
Q Consensus 90 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~ 163 (839)
++++......+. .++.+.+.+. .+++-+||+|+++.. ...+.+...+......
T Consensus 91 ~eId~a~~~~Id---------------------~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~ 149 (624)
T PRK14959 91 VEIDGASNRGID---------------------DAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPAR 149 (624)
T ss_pred EEEecccccCHH---------------------HHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCC
Confidence 233221111111 1222221111 346678999999865 3345555554433345
Q ss_pred ceEEEEeCc-hhhhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCch-hHHHHHHHHh
Q 003203 164 CKILLASRY-RDILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLP-LAIVIVARAL 238 (839)
Q Consensus 164 s~iivTtr~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~P-lai~~~~~~L 238 (839)
..+|++|.+ ..+..........+++++++.++..+.+.+.+...... -.++.++.|++.++|.+ .|+..+...+
T Consensus 150 ~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~-id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 150 VTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD-YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred EEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 566665655 33433223345688999999999999998877332211 12455788999999964 6777665544
No 96
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.51 E-value=1e-06 Score=88.11 Aligned_cols=180 Identities=12% Similarity=0.137 Sum_probs=103.2
Q ss_pred cccCCCCCcccc-chH-HHHHHHHHHhc-CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHH
Q 003203 27 WLRSNQGYKSFE-SRK-SILCDILDWLT-SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRI 103 (839)
Q Consensus 27 ~~~~~~~~~~fv-gR~-~~~~~l~~~l~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 103 (839)
....+...++|+ |+. ..+..+.++.. ....+.+.|+|+.|+|||+||+.+++....++ ..+.+++.....
T Consensus 10 ~~~~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~--~~~~~i~~~~~~----- 82 (227)
T PRK08903 10 GPPPPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG--RNARYLDAASPL----- 82 (227)
T ss_pred CCCChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEehHHhH-----
Confidence 344445566666 443 33444444443 23346789999999999999999999865331 234555443311
Q ss_pred HHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccccCCC-CCCCc-eEEEEeCchhhhh--
Q 003203 104 QDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI--DLVTVGIPFGN-AHRGC-KILLASRYRDILV-- 177 (839)
Q Consensus 104 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~-~~~~s-~iivTtr~~~~~~-- 177 (839)
.. + . .. ...-++|+||++... ..+.+...+.. ...+. .+|+|++......
T Consensus 83 -~~----~-----------------~-~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l 138 (227)
T PRK08903 83 -LA----F-----------------D-FD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPL 138 (227)
T ss_pred -HH----H-----------------h-hc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCC
Confidence 00 0 0 11 233478889997542 22223222221 12333 3666666433211
Q ss_pred -----hhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHHHHh
Q 003203 178 -----SEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVARAL 238 (839)
Q Consensus 178 -----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L 238 (839)
+.......++++++++++-..++.+.+..... .-.++..+.+++...|++..+..+...+
T Consensus 139 ~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v-~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 139 REDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGL-QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 01122468899999998888888776532111 1224567888889999998877766554
No 97
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=3.5e-06 Score=93.85 Aligned_cols=182 Identities=15% Similarity=0.166 Sum_probs=115.2
Q ss_pred CCCCccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHHHHhc-------------------cCCeEE
Q 003203 31 NQGYKSFESRKSILCDILDWLTSPNVN-MIGVYGIGGVGKTALMHEVLFEAKKQN-------------------LFDQVI 90 (839)
Q Consensus 31 ~~~~~~fvgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~~ 90 (839)
|....+++|.+..++.+.+++..++.. .+.++|+.|+||||+|+.+++.+.... .|..++
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ 91 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI 91 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee
Confidence 566778999999999999999877655 568999999999999999998874321 111223
Q ss_pred EEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccccCCCCCCCc
Q 003203 91 FVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLW----KENKILVILDDICTSI--DLVTVGIPFGNAHRGC 164 (839)
Q Consensus 91 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s 164 (839)
++..+....+ +.++.+..... .+++-++|+|+++... ..+.+...+......+
T Consensus 92 ei~~~~~~~v---------------------d~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~ 150 (527)
T PRK14969 92 EVDAASNTQV---------------------DAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHV 150 (527)
T ss_pred EeeccccCCH---------------------HHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCE
Confidence 3322221112 22222222221 2466789999998653 3445555554444566
Q ss_pred eEEEEeCchh-hhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchh-HHHHH
Q 003203 165 KILLASRYRD-ILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPL-AIVIV 234 (839)
Q Consensus 165 ~iivTtr~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~ 234 (839)
.+|++|.+.. +..........+++++++.++..+.+.+.+....... -++....|++.++|.+- |+..+
T Consensus 151 ~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~-~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 151 KFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF-DATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 6776665543 3221222356889999999999999988774322221 23456789999999775 44443
No 98
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.51 E-value=2.5e-06 Score=82.34 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=97.9
Q ss_pred HHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHHHHhcc-------------------CCeEEEEEEecCCCHHHHHH
Q 003203 46 DILDWLTSPNV-NMIGVYGIGGVGKTALMHEVLFEAKKQNL-------------------FDQVIFVLASSTANVKRIQD 105 (839)
Q Consensus 46 ~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------f~~~~wv~~~~~~~~~~~~~ 105 (839)
.+.+.+..++. ..+.++|+.|+||||+|+.+.+.+..... +....++......
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~------- 75 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQS------- 75 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCc-------
Confidence 45666666665 57899999999999999999988753211 1111222111110
Q ss_pred HHHHHhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCchh-hhhh
Q 003203 106 EIADQLCLELCKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRYRD-ILVS 178 (839)
Q Consensus 106 ~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~~-~~~~ 178 (839)
...+.+..+.+.+. .+.+-++|+||++.. ...+.+...+....+.+.+|++|++.. +...
T Consensus 76 -------------~~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~ 142 (188)
T TIGR00678 76 -------------IKVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPT 142 (188)
T ss_pred -------------CCHHHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHH
Confidence 11122222222221 246678999999765 335555555555455677777776542 2221
Q ss_pred hcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhH
Q 003203 179 EMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLA 230 (839)
Q Consensus 179 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 230 (839)
.......+++.+++.++..+.+.+. | .+ ++.++.|++.++|.|..
T Consensus 143 i~sr~~~~~~~~~~~~~~~~~l~~~-g--i~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 143 IRSRCQVLPFPPLSEEALLQWLIRQ-G--IS----EEAAELLLALAGGSPGA 187 (188)
T ss_pred HHhhcEEeeCCCCCHHHHHHHHHHc-C--CC----HHHHHHHHHHcCCCccc
Confidence 2233568999999999999999887 2 11 35688999999998853
No 99
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.47 E-value=1.5e-06 Score=93.25 Aligned_cols=177 Identities=16% Similarity=0.226 Sum_probs=104.6
Q ss_pred CCCCCccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec
Q 003203 30 SNQGYKSFESRKSILCDILDWLT----S---------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS 96 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~----~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 96 (839)
+......+.|+++.++++.+.+. . ...+-+.|+|++|+|||++|+.+++..... | +.+..
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~--~-----~~v~~ 189 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--F-----IRVVG 189 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC--E-----Eecch
Confidence 33445678999999999988874 1 123568999999999999999999876522 2 22211
Q ss_pred CCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc----------------ccccccccCC--
Q 003203 97 TANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI----------------DLVTVGIPFG-- 158 (839)
Q Consensus 97 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~----------------~~~~l~~~l~-- 158 (839)
..+... .++ ........+.+......+.+|++||++... .+..+...+.
T Consensus 190 ----~~l~~~---~~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~ 256 (364)
T TIGR01242 190 ----SELVRK---YIG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF 256 (364)
T ss_pred ----HHHHHH---hhh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC
Confidence 111111 111 111222333443334567899999987531 0111111111
Q ss_pred CCCCCceEEEEeCchhhhhhhc----CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCch
Q 003203 159 NAHRGCKILLASRYRDILVSEM----HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLP 228 (839)
Q Consensus 159 ~~~~~s~iivTtr~~~~~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~P 228 (839)
....+.+||.||+......... .....++++..+.++..++|+.++.......+.. ...+++.+.|..
T Consensus 257 ~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~--~~~la~~t~g~s 328 (364)
T TIGR01242 257 DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD--LEAIAKMTEGAS 328 (364)
T ss_pred CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC--HHHHHHHcCCCC
Confidence 1124677888888654321111 2245789999999999999998884433222111 457788887764
No 100
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.46 E-value=3.2e-08 Score=97.94 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=19.0
Q ss_pred HHHhcccceEEeccccCch----hhccccccCCCCCCCeeeeccCC
Q 003203 620 LMQLKGIEHLYLDEVPGIK----NVLYDLEREGFPQLKHLQVQNNP 661 (839)
Q Consensus 620 ~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~l~~L~~L~l~~~~ 661 (839)
+..+++|+.|++.+|.--. .+...+. ..+|+|+.|.+.+|.
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~-~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALK-ESAPSLEVLELAGNE 281 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHh-ccCCCCceeccCcch
Confidence 3445555566555554222 1111221 235666666666653
No 101
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=3.7e-06 Score=94.37 Aligned_cols=199 Identities=10% Similarity=0.120 Sum_probs=118.1
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHHHHhccCC--eEEEEEEecCCCHHHHHHH
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNVN-MIGVYGIGGVGKTALMHEVLFEAKKQNLFD--QVIFVLASSTANVKRIQDE 106 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~ 106 (839)
.|....+++|.+..++.|.+++..++.. .+.++|+.|+||||+|+.+++.+....... ...+-....+. --+.
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~----~C~~ 94 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGE----HCQA 94 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccH----HHHH
Confidence 4566788999999999999999877654 688999999999999999998865322110 00000000000 0011
Q ss_pred HHHHhhh-----hccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccccCCCCCCCceEEEEe-Cchh
Q 003203 107 IADQLCL-----ELCKGTESERARTLFDRLW----KENKILVILDDICTSI--DLVTVGIPFGNAHRGCKILLAS-RYRD 174 (839)
Q Consensus 107 i~~~l~~-----~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTt-r~~~ 174 (839)
|...-.. ........+.++.+..... .+++-++|+|+++... ..+.+...+..-..++.+|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 1110000 0000112233333333332 2355678999997653 3455555554444566666655 3344
Q ss_pred hhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHH
Q 003203 175 ILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVI 233 (839)
Q Consensus 175 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 233 (839)
+..........+++.+++.++..+.+.+.+......-+ .+....|++.++|.+..+..
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~-~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE-DEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHH
Confidence 44323334578999999999999999998743322211 35578899999998865443
No 102
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.46 E-value=3.9e-06 Score=95.35 Aligned_cols=207 Identities=14% Similarity=0.082 Sum_probs=115.2
Q ss_pred cCCCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCC---eEEEEEEecC---CCHHH
Q 003203 29 RSNQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFD---QVIFVLASST---ANVKR 102 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~---~~~wv~~~~~---~~~~~ 102 (839)
..|...+.++|++..++.+.+.+.......+.|+|++|+||||+|+.+++..+....+. ..-|+.+... .+...
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 34666778999999999999888766667899999999999999999988765433331 2234444321 12222
Q ss_pred HHHHHH---------------HHhhhh------------------ccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc--
Q 003203 103 IQDEIA---------------DQLCLE------------------LCKGTESERARTLFDRLWKENKILVILDDICTS-- 147 (839)
Q Consensus 103 ~~~~i~---------------~~l~~~------------------~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~-- 147 (839)
+...++ ...+.. ....-.......+.+.+ +.+++.++-|+.|..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~L-e~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVL-EDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHH-hhCeEEeecceeccCCc
Confidence 211111 111100 00011122333444444 346666666555533
Q ss_pred cccccccccCCCCCCCceEEE--EeCchhhh-hhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHh
Q 003203 148 IDLVTVGIPFGNAHRGCKILL--ASRYRDIL-VSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANEC 224 (839)
Q Consensus 148 ~~~~~l~~~l~~~~~~s~iiv--Ttr~~~~~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~ 224 (839)
..|+.+...+....+...+++ ||++.... .........+.+.+++.+|.++++++.+...... -.+++.+.|.+.+
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~-ls~eal~~L~~ys 385 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH-LAAGVEELIARYT 385 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHCC
Confidence 345555544444444444555 45544321 1111223467899999999999999987532211 1134455555555
Q ss_pred CCchhHHHHHHHH
Q 003203 225 GGLPLAIVIVARA 237 (839)
Q Consensus 225 ~G~Plai~~~~~~ 237 (839)
..-+-++..++..
T Consensus 386 ~~gRraln~L~~~ 398 (615)
T TIGR02903 386 IEGRKAVNILADV 398 (615)
T ss_pred CcHHHHHHHHHHH
Confidence 4445555555433
No 103
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=5e-09 Score=100.86 Aligned_cols=85 Identities=27% Similarity=0.184 Sum_probs=43.5
Q ss_pred CCCEEEccCCCCC--CCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccccccccchhh
Q 003203 477 KLEILSLVDSDIE--RLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQE 554 (839)
Q Consensus 477 ~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 554 (839)
.||+|||++..|+ .+-.-+..+.+|+.|.+.++..-..+... +++-.+|+.|+++.|+-. .....---
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~---------t~n~~~ll 255 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGF---------TENALQLL 255 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeecccccccc---------chhHHHHH
Confidence 3666666666555 33334455666666666665522223222 555666666666665421 01111223
Q ss_pred hccCCCCCEEEEEeccc
Q 003203 555 LRHLSQLTTLEIQIQDA 571 (839)
Q Consensus 555 l~~l~~L~~L~l~~~~~ 571 (839)
+.+++.|..|+++++..
T Consensus 256 ~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFL 272 (419)
T ss_pred HHhhhhHhhcCchHhhc
Confidence 45566666666666544
No 104
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.45 E-value=6.5e-07 Score=88.94 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=63.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC--CCHHHHHHHHHHHhhhhccCCCchH------HHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST--ANVKRIQDEIADQLCLELCKGTESE------RART 126 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 126 (839)
....++|+|++|+|||||++++++..... +|+.++|+.+... .++.++++++...+-.......... .+..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34688999999999999999999998765 8999999998776 7899999998333221111111111 1112
Q ss_pred HHHHH-HcCCcEEEEEeCCCCc
Q 003203 127 LFDRL-WKENKILVILDDICTS 147 (839)
Q Consensus 127 ~~~~l-~~~~~~LlVlDdv~~~ 147 (839)
..+++ ..++++++++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 22222 3579999999999653
No 105
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=5.2e-06 Score=89.53 Aligned_cols=184 Identities=13% Similarity=0.110 Sum_probs=110.1
Q ss_pred cCCCCCccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHHHHh------ccCCe-EEEEEEecCCCH
Q 003203 29 RSNQGYKSFESRKSILCDILDWLTSPNV-NMIGVYGIGGVGKTALMHEVLFEAKKQ------NLFDQ-VIFVLASSTANV 100 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~------~~f~~-~~wv~~~~~~~~ 100 (839)
..|....+++|.+...+.+.+++..++. +.+.++|+.|+||||+|+.+.+..... ..|.. ++-+......+.
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV 90 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH
Confidence 3466778899999999999999987665 478899999999999999998876431 11211 111111111111
Q ss_pred HHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccccCCCCCCCceEEEEeCc-hhhhh
Q 003203 101 KRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI--DLVTVGIPFGNAHRGCKILLASRY-RDILV 177 (839)
Q Consensus 101 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTtr~-~~~~~ 177 (839)
..+ .++.+.+... .. .+++-++|+|+++... .++.+...+........+|++|.. ..+..
T Consensus 91 ~~i-~~l~~~~~~~---------------p~-~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 91 DDI-RNLIDQVRIP---------------PQ-TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred HHH-HHHHHHHhhc---------------cc-cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 111 1222211100 00 1355689999997543 344444444333344555555543 33322
Q ss_pred hhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhH
Q 003203 178 SEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLA 230 (839)
Q Consensus 178 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 230 (839)
........++++++++++....+.+.+...... -.++..+.|++.++|.+-.
T Consensus 154 ~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~-i~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK-FEDDALHIIAQKADGALRD 205 (367)
T ss_pred HHHhcceeEecCCccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhCCCCHHH
Confidence 122334579999999999999998877332221 1145678899999987653
No 106
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.45 E-value=7.8e-07 Score=91.83 Aligned_cols=101 Identities=15% Similarity=0.170 Sum_probs=67.7
Q ss_pred HHHHHhcC-CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC--CHHHHHHHHHHHhhhhccCCCchH
Q 003203 46 DILDWLTS-PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA--NVKRIQDEIADQLCLELCKGTESE 122 (839)
Q Consensus 46 ~l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~ 122 (839)
++++++.. .+-+..+|+|++|+||||||+++|+..... +|+.++|+.+.+.. ++.++++++...+-....+.....
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~ 236 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAER 236 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHH
Confidence 34455442 233577899999999999999999999875 89999999999887 777888877632221211111111
Q ss_pred ------HHHHHHHHH-HcCCcEEEEEeCCCCc
Q 003203 123 ------RARTLFDRL-WKENKILVILDDICTS 147 (839)
Q Consensus 123 ------~~~~~~~~l-~~~~~~LlVlDdv~~~ 147 (839)
.+...-+++ ..+++++|++|++...
T Consensus 237 ~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 237 HVQVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 112222222 3579999999999643
No 107
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=4.6e-06 Score=96.87 Aligned_cols=179 Identities=14% Similarity=0.086 Sum_probs=115.0
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHHHHhccC---------------------C
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNVN-MIGVYGIGGVGKTALMHEVLFEAKKQNLF---------------------D 87 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~f---------------------~ 87 (839)
.|....+++|.+..++.|..++..+++. .+.++|+.|+||||+|+.+++.+...+.. .
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 4556678999999999999999877665 57899999999999999999887532111 0
Q ss_pred eEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHH----HcCCcEEEEEeCCCCc--cccccccccCCCCC
Q 003203 88 QVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRL----WKENKILVILDDICTS--IDLVTVGIPFGNAH 161 (839)
Q Consensus 88 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l----~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~ 161 (839)
.+++++......+ +.++.+.+.. ..+++-++|||+++.. ...+.|...+..-.
T Consensus 90 dv~eidaas~~~V---------------------d~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP 148 (824)
T PRK07764 90 DVTEIDAASHGGV---------------------DDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPP 148 (824)
T ss_pred cEEEecccccCCH---------------------HHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCC
Confidence 1223322211122 2222222221 1245667889999865 34555555555545
Q ss_pred CCceEEEEeCch-hhhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhH
Q 003203 162 RGCKILLASRYR-DILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLA 230 (839)
Q Consensus 162 ~~s~iivTtr~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 230 (839)
..+.+|++|.+. .+..........|++..++.++..+++.+.+.......+ .+....|++.++|.+..
T Consensus 149 ~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id-~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 149 EHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE-PGVLPLVIRAGGGSVRD 217 (824)
T ss_pred CCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHH
Confidence 566666666543 344323344678999999999999999887733222211 33467889999998743
No 108
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.42 E-value=3e-06 Score=91.20 Aligned_cols=175 Identities=17% Similarity=0.250 Sum_probs=103.2
Q ss_pred CCCccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC
Q 003203 32 QGYKSFESRKSILCDILDWLT----S---------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA 98 (839)
Q Consensus 32 ~~~~~fvgR~~~~~~l~~~l~----~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 98 (839)
..+..+.|+++.++++.+.+. . ...+-|.++|++|+|||++|+.+++..... |+.++.
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-------~i~v~~-- 198 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVG-- 198 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-------EEEeeh--
Confidence 334568899999999988764 1 234568999999999999999999876421 333322
Q ss_pred CHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc------------c----cccccccCCC--C
Q 003203 99 NVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI------------D----LVTVGIPFGN--A 160 (839)
Q Consensus 99 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~------------~----~~~l~~~l~~--~ 160 (839)
.++ .... ..........+++......+.+|++||++... . +..+...+.. .
T Consensus 199 --~~l----~~~~-----~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 199 --SEL----VQKF-----IGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred --HHH----hHhh-----ccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 111 1111 00112223344444444577899999997531 0 1111111111 1
Q ss_pred CCCceEEEEeCchhhhhhhc----CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCch
Q 003203 161 HRGCKILLASRYRDILVSEM----HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLP 228 (839)
Q Consensus 161 ~~~s~iivTtr~~~~~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~P 228 (839)
..+.+||.||...+...... .....+++++.+.++-.++|+.+........+.. ...+++.+.|.-
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~--~~~la~~t~g~s 337 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD--LEELAELTEGAS 337 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC--HHHHHHHcCCCC
Confidence 23567887887654332111 1245799999999999999998885433222111 456777777753
No 109
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=8.4e-06 Score=89.46 Aligned_cols=183 Identities=12% Similarity=0.071 Sum_probs=116.3
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHHHHhcc------------------CC-eE
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNVN-MIGVYGIGGVGKTALMHEVLFEAKKQNL------------------FD-QV 89 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~------------------f~-~~ 89 (839)
.|....+++|.+...+.|..++..++.. +..++|+.|+||||+|+.+++..-.... +. .+
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 4567788999999999999999877765 5589999999999999999888632111 11 12
Q ss_pred EEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCCCC
Q 003203 90 IFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAHRG 163 (839)
Q Consensus 90 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~ 163 (839)
+.++.........+ +.+.+... .+++-++|+|+++.. +..+++...+......
T Consensus 89 ~eldaas~~gId~I---------------------Relie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~ 147 (535)
T PRK08451 89 IEMDAASNRGIDDI---------------------RELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (535)
T ss_pred EEeccccccCHHHH---------------------HHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence 22222211122222 11211110 145668899999865 3445555555444556
Q ss_pred ceEEEEeCchh-hhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHH
Q 003203 164 CKILLASRYRD-ILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIV 234 (839)
Q Consensus 164 s~iivTtr~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 234 (839)
+++|++|.+.. +..........+++.+++.++..+.+.+.+......- .++.+..|++.++|.+.-+...
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i-~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY-EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHH
Confidence 77777776642 2221223357899999999999999988774322221 2456789999999988544433
No 110
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=7.8e-06 Score=89.35 Aligned_cols=186 Identities=15% Similarity=0.120 Sum_probs=113.5
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHHHHhc---------------------cCC
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNV-NMIGVYGIGGVGKTALMHEVLFEAKKQN---------------------LFD 87 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~---------------------~f~ 87 (839)
.|....+++|.+..++.+.+++..++. ..+.++|+.|+||||+|+.+++...... +++
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 356677899999999999999987765 5678999999999999999988764321 111
Q ss_pred eEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccccCCCCCCCce
Q 003203 88 QVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS--IDLVTVGIPFGNAHRGCK 165 (839)
Q Consensus 88 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ 165 (839)
.+++.........++ +++.+.+. ..-..+.+-++|+|+++.. ...+.+...+.....+..
T Consensus 92 -~~~i~g~~~~gid~i-r~i~~~l~----------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~ 153 (451)
T PRK06305 92 -VLEIDGASHRGIEDI-RQINETVL----------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVK 153 (451)
T ss_pred -eEEeeccccCCHHHH-HHHHHHHH----------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCce
Confidence 112211111111111 11111110 0001246778899999754 234445555544445666
Q ss_pred EEEEeCch-hhhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchh-HHHHH
Q 003203 166 ILLASRYR-DILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPL-AIVIV 234 (839)
Q Consensus 166 iivTtr~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~ 234 (839)
+|++|... .+..........+++.++++++..+.+.+.+......- ..+.++.|++.++|.+- |+..+
T Consensus 154 ~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i-~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 154 FFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET-SREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 76666443 33222233456899999999999999988774322111 24457889999999764 44443
No 111
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=6.3e-06 Score=92.96 Aligned_cols=184 Identities=13% Similarity=0.154 Sum_probs=114.2
Q ss_pred cCCCCCccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHHHHhccCC----------------eEEE
Q 003203 29 RSNQGYKSFESRKSILCDILDWLTSPNVN-MIGVYGIGGVGKTALMHEVLFEAKKQNLFD----------------QVIF 91 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~----------------~~~w 91 (839)
..|....+++|.+..++.|.+++..+++. .+.++|+.|+||||+|+.+++.+-.....+ .+++
T Consensus 12 yRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie 91 (725)
T PRK07133 12 YRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE 91 (725)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE
Confidence 34666788999999999999999877654 567999999999999999988764321100 0111
Q ss_pred EEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCCCCce
Q 003203 92 VLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAHRGCK 165 (839)
Q Consensus 92 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ 165 (839)
+..... ...+.++.+.+... .+++-++|+|+++.. ..+.++...+......+.
T Consensus 92 idaasn---------------------~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~ti 150 (725)
T PRK07133 92 MDAASN---------------------NGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVI 150 (725)
T ss_pred Eecccc---------------------CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceE
Confidence 111000 11222333333332 246668899999755 345555554443334555
Q ss_pred EEEEe-CchhhhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchh-HHHHH
Q 003203 166 ILLAS-RYRDILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPL-AIVIV 234 (839)
Q Consensus 166 iivTt-r~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~ 234 (839)
+|++| +...+..........+++.+++.++..+.+...+.......+ .+.++.|++.++|-+- |+..+
T Consensus 151 fILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id-~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 151 FILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE-KNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred EEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHH
Confidence 55554 444444323344578999999999999999887632221111 3457789999999764 44433
No 112
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=8.2e-06 Score=91.72 Aligned_cols=195 Identities=12% Similarity=0.119 Sum_probs=114.3
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEE-----EEecCCCHHHH
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNVN-MIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFV-----LASSTANVKRI 103 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv-----~~~~~~~~~~~ 103 (839)
.|....+++|.+..++.|.+++..+++. .+.++|+.|+||||+|+.+++.+......+.-.|. .+..+..-
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC--- 87 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESC--- 87 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHH---
Confidence 4667788999999999999999877664 48899999999999999999887543211100111 00000000
Q ss_pred HHHHHHHhhh-----hccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccccCCCCCCCceEEEEeC-
Q 003203 104 QDEIADQLCL-----ELCKGTESERARTLFDRLW----KENKILVILDDICTSI--DLVTVGIPFGNAHRGCKILLASR- 171 (839)
Q Consensus 104 ~~~i~~~l~~-----~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTtr- 171 (839)
+.+...-.. ........+.+..+.+.+. .+.+-++|+|+++... ..+.+...+..-...+.+|++|.
T Consensus 88 -~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~ 166 (620)
T PRK14954 88 -RDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTE 166 (620)
T ss_pred -HHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 000000000 0000111233333333331 2456688999997653 34555555544444555555554
Q ss_pred chhhhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchh
Q 003203 172 YRDILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPL 229 (839)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl 229 (839)
...+..........+++.+++.++..+.+.+.+......- ..+.++.|++.++|..-
T Consensus 167 ~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I-~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 167 LHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI-DADALQLIARKAQGSMR 223 (620)
T ss_pred hhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhCCCHH
Confidence 3444332344567899999999999999988773221111 14457889999999654
No 113
>PRK05642 DNA replication initiation factor; Validated
Probab=98.38 E-value=8.3e-06 Score=81.26 Aligned_cols=185 Identities=16% Similarity=0.207 Sum_probs=106.0
Q ss_pred ccccCCCCCcccc-chHHHHHHHHHHh-cC---CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCH
Q 003203 26 MWLRSNQGYKSFE-SRKSILCDILDWL-TS---PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANV 100 (839)
Q Consensus 26 ~~~~~~~~~~~fv-gR~~~~~~l~~~l-~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 100 (839)
+...+....++|+ |......+..+.+ .. .....+.|+|..|+|||.||+.+++....+ -..++|++...
T Consensus 10 ~~~~~~~tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~---- 83 (234)
T PRK05642 10 VRLRDDATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE---- 83 (234)
T ss_pred CCCCCcccccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH----
Confidence 3444445566666 4444433333322 21 113578999999999999999999887643 24567775432
Q ss_pred HHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc---ccccc-ccccCCC-CCCCceEEEEeCchhh
Q 003203 101 KRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS---IDLVT-VGIPFGN-AHRGCKILLASRYRDI 175 (839)
Q Consensus 101 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~---~~~~~-l~~~l~~-~~~~s~iivTtr~~~~ 175 (839)
+... ...+.+.+.+ -. ++|+||+... ..|+. +...+.. ...|.++|+|++....
T Consensus 84 --~~~~-----------------~~~~~~~~~~-~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~ 142 (234)
T PRK05642 84 --LLDR-----------------GPELLDNLEQ-YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPR 142 (234)
T ss_pred --HHhh-----------------hHHHHHhhhh-CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHH
Confidence 1111 0123333322 22 6788999733 23322 2222221 2246678888886442
Q ss_pred hh--------hhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHHHHh
Q 003203 176 LV--------SEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVARAL 238 (839)
Q Consensus 176 ~~--------~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L 238 (839)
.- +.......++++++++++-.++++.++.... -.-.+++.+-|++++.|-.-.+..+-..|
T Consensus 143 ~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~-~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 143 ELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG-LHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 21 1122236789999999999999996663221 11225677888888888766555444333
No 114
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.37 E-value=5.6e-06 Score=97.52 Aligned_cols=182 Identities=14% Similarity=0.114 Sum_probs=106.1
Q ss_pred CCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccC----CeEE-EEEEecCCCHHHHHH
Q 003203 31 NQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLF----DQVI-FVLASSTANVKRIQD 105 (839)
Q Consensus 31 ~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f----~~~~-wv~~~~~~~~~~~~~ 105 (839)
+....+++||+.++.+++..|......-+.++|++|+||||+|+.+++++...... +..+ .+.++.-.
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~------- 255 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ------- 255 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh-------
Confidence 34457899999999999999987776778899999999999999999987543211 1222 23222100
Q ss_pred HHHHHhhhhccCCCchHHHHHHHHHHH-cCCcEEEEEeCCCCcc-------ccc---cccccCCCCCCCceEEEEeCchh
Q 003203 106 EIADQLCLELCKGTESERARTLFDRLW-KENKILVILDDICTSI-------DLV---TVGIPFGNAHRGCKILLASRYRD 174 (839)
Q Consensus 106 ~i~~~l~~~~~~~~~~~~~~~~~~~l~-~~~~~LlVlDdv~~~~-------~~~---~l~~~l~~~~~~s~iivTtr~~~ 174 (839)
..........+.+..+++... .+++.+|++|+++... +.+ .+...+ .....++|-||...+
T Consensus 256 ------ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l--~~G~l~~IgaTT~~e 327 (852)
T TIGR03345 256 ------AGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL--ARGELRTIAATTWAE 327 (852)
T ss_pred ------cccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh--hCCCeEEEEecCHHH
Confidence 000001111233334444443 2578999999987542 111 122221 112356666666543
Q ss_pred hh------hhhcCccceEEccCCCHHHHHHHHHHHhC---CCCCCcchHHHHHHHHHHhCCc
Q 003203 175 IL------VSEMHSQYNYCVSVLNKEEAWSLFKKMVG---DYVEDSDLESIAIQVANECGGL 227 (839)
Q Consensus 175 ~~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~---~~~~~~~~~~~~~~I~~~~~G~ 227 (839)
.. .........+.+++++.+++.++++.... ....-.-..+....+++.+++.
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 21 11122346899999999999999765542 1111112244566677776554
No 115
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=1.3e-05 Score=89.56 Aligned_cols=185 Identities=14% Similarity=0.117 Sum_probs=116.6
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCeeE-EEEEcCCCCcHHHHHHHHHHHHHHhccC---------------------C
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNVNM-IGVYGIGGVGKTALMHEVLFEAKKQNLF---------------------D 87 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~~~-v~I~G~~GiGKTtLa~~~~~~~~~~~~f---------------------~ 87 (839)
.|....+++|.+..++.|.+++..+++.- +.++|+.|+||||+|+.+++.+...... .
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~ 87 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI 87 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc
Confidence 45667889999999999999999877654 6899999999999999999876532111 0
Q ss_pred eEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCC
Q 003203 88 QVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAH 161 (839)
Q Consensus 88 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~ 161 (839)
.++.++.+.... .+.++.+..... .+++-++|+|+++.. ...+.+...+....
T Consensus 88 dvieidaas~~g---------------------vd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp 146 (584)
T PRK14952 88 DVVELDAASHGG---------------------VDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPP 146 (584)
T ss_pred eEEEeccccccC---------------------HHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCC
Confidence 122222211111 222222222221 245668899999754 34555555555444
Q ss_pred CCceEEEEeCc-hhhhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchh-HHHHHHH
Q 003203 162 RGCKILLASRY-RDILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPL-AIVIVAR 236 (839)
Q Consensus 162 ~~s~iivTtr~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~~~ 236 (839)
....+|++|.+ ..+..........+++.+++.++..+.+.+.+......- ..+....|++.++|.+- ++..+-.
T Consensus 147 ~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i-~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 147 EHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV-DDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred CCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 56666665544 434332233467899999999999999988774322211 13456788999999774 4444433
No 116
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.36 E-value=4.7e-06 Score=97.55 Aligned_cols=159 Identities=17% Similarity=0.207 Sum_probs=96.6
Q ss_pred CCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhcc---C-CeEEEEEEecCCCHHHHHHH
Q 003203 31 NQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNL---F-DQVIFVLASSTANVKRIQDE 106 (839)
Q Consensus 31 ~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~---f-~~~~wv~~~~~~~~~~~~~~ 106 (839)
+...++++||+++++++++.|......-+.++|++|+|||++|+.++++...... + +..+|. + +...+..
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a- 251 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLA- 251 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhh-
Confidence 3344689999999999999998776677889999999999999999998754321 1 233332 1 1111110
Q ss_pred HHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc--------c---cccccccCCCCCCC-ceEEEEeCchh
Q 003203 107 IADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI--------D---LVTVGIPFGNAHRG-CKILLASRYRD 174 (839)
Q Consensus 107 i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~--------~---~~~l~~~l~~~~~~-s~iivTtr~~~ 174 (839)
.........+.+..+++.+...++.+|++|+++... . -+.+...+ ..| .++|-+|...+
T Consensus 252 ------~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i~~IgaTt~~e 322 (731)
T TIGR02639 252 ------GTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKLRCIGSTTYEE 322 (731)
T ss_pred ------hccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCeEEEEecCHHH
Confidence 000111223445555665544568999999997431 0 11122222 223 45555555432
Q ss_pred hh------hhhcCccceEEccCCCHHHHHHHHHHHh
Q 003203 175 IL------VSEMHSQYNYCVSVLNKEEAWSLFKKMV 204 (839)
Q Consensus 175 ~~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 204 (839)
.. .........+++++++.++..++++...
T Consensus 323 ~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 323 YKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 11 1111224578999999999999999766
No 117
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.7e-08 Score=97.24 Aligned_cols=120 Identities=16% Similarity=0.133 Sum_probs=65.6
Q ss_pred HHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhcccccccccccc
Q 003203 619 ILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICHS 698 (839)
Q Consensus 619 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~ 698 (839)
.+..++.|..|+++.|....+.....-..-=++|+.|+|+||...- .......-...+|+|..|++++|..++.-+..
T Consensus 255 l~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl--~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~ 332 (419)
T KOG2120|consen 255 LLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL--QKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 332 (419)
T ss_pred HHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh--hhhHHHHHHHhCCceeeeccccccccCchHHH
Confidence 4556667777777766554443222111122677777777775321 11111112346777777777777776653221
Q ss_pred cccccccCCCCEEEEecCCCcccccchhhhhcCCCccEEEEeccc
Q 003203 699 QLTAVSFCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKCK 743 (839)
Q Consensus 699 ~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 743 (839)
....|+.|++|.++.|-.+---.. --+...|+|.+|++.+|-
T Consensus 333 --~~~kf~~L~~lSlsRCY~i~p~~~-~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 333 --EFFKFNYLQHLSLSRCYDIIPETL-LELNSKPSLVYLDVFGCV 374 (419)
T ss_pred --HHHhcchheeeehhhhcCCChHHe-eeeccCcceEEEEecccc
Confidence 234677777777777764421100 012456777777777764
No 118
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.34 E-value=6.6e-06 Score=86.99 Aligned_cols=157 Identities=13% Similarity=0.117 Sum_probs=93.8
Q ss_pred CccccCCCCCccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHH
Q 003203 25 DMWLRSNQGYKSFESRKSILCDILDWLTSPNV-NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRI 103 (839)
Q Consensus 25 ~~~~~~~~~~~~fvgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 103 (839)
+...-.|....+++|.+...+.+.+++.+++. .++.++|++|+||||+|+.+++.... ....++.+. .....+
T Consensus 11 w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~~~~i 84 (316)
T PHA02544 11 WEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CRIDFV 84 (316)
T ss_pred ceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-ccHHHH
Confidence 44445567778899999999999999987665 46666999999999999999887631 234444444 222211
Q ss_pred HHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc---cccccccccCCCCCCCceEEEEeCchhhh-hhh
Q 003203 104 QDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS---IDLVTVGIPFGNAHRGCKILLASRYRDIL-VSE 179 (839)
Q Consensus 104 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~---~~~~~l~~~l~~~~~~s~iivTtr~~~~~-~~~ 179 (839)
...+.. +.... .. .+.+-++|+||++.. +....+...+.....++++|+||...... ...
T Consensus 85 ~~~l~~-~~~~~--------------~~-~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l 148 (316)
T PHA02544 85 RNRLTR-FASTV--------------SL-TGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPL 148 (316)
T ss_pred HHHHHH-HHHhh--------------cc-cCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHH
Confidence 111111 10000 01 134567889999755 12222332233344677888888765422 111
Q ss_pred cCccceEEccCCCHHHHHHHHHHH
Q 003203 180 MHSQYNYCVSVLNKEEAWSLFKKM 203 (839)
Q Consensus 180 ~~~~~~~~l~~L~~~ea~~Lf~~~ 203 (839)
......+.++..+.++..+++...
T Consensus 149 ~sR~~~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 149 RSRCRVIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred HhhceEEEeCCCCHHHHHHHHHHH
Confidence 222346778788888887766543
No 119
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.34 E-value=1e-07 Score=94.38 Aligned_cols=189 Identities=20% Similarity=0.195 Sum_probs=107.9
Q ss_pred cCCCCCcEEEccCCCcCC--C----cccCCCCCCCEEEccCCCCCCCc--------------hhhcCCCccCeEecCCCc
Q 003203 451 HLLSNLQTLCLDQCVVGD--I----SIIGNLKKLEILSLVDSDIERLP--------------NEIGQLTQLRCLDLSFCR 510 (839)
Q Consensus 451 ~~l~~L~~L~l~~~~~~~--~----~~~~~l~~L~~L~l~~~~l~~lp--------------~~i~~l~~L~~L~l~~~~ 510 (839)
-.+++|++|+||.|-+.. + .-+.++..|++|.|.+|.+...- .-+++-++|+.+...+|.
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 345566666666664433 2 23445667777777777654221 113445567777777765
Q ss_pred CCCccCch----hhcCccccCeEEccCCccccccccccccccccchhhhccCCCCCEEEEEeccccCCCccccccccceE
Q 003203 511 NLKVIPPN----VISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERY 586 (839)
Q Consensus 511 ~l~~~p~~----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l 586 (839)
+...+.. .+...+.|+.+.+..|.+.. .........+..+++|+.|++..|.++.-........|
T Consensus 169 -len~ga~~~A~~~~~~~~leevr~~qN~I~~-------eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL--- 237 (382)
T KOG1909|consen 169 -LENGGATALAEAFQSHPTLEEVRLSQNGIRP-------EGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL--- 237 (382)
T ss_pred -cccccHHHHHHHHHhccccceEEEecccccC-------chhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh---
Confidence 5544432 24456777777777776641 11223456677788888888887766543222211111
Q ss_pred EEEEcCCCCCCCCCCCccEEEecccCCcch------HHHHHHhcccceEEeccccCchhhcccc--ccCCCCCCCeeeec
Q 003203 587 KIYIGDEWDWSGKSDNTRALKLKLCSSIYL------DEILMQLKGIEHLYLDEVPGIKNVLYDL--EREGFPQLKHLQVQ 658 (839)
Q Consensus 587 ~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~------~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~l~~L~~L~l~ 658 (839)
+.+++|+.+++++|....- .......|+|+.|.+.++....+....+ .....|.|+.|.|+
T Consensus 238 -----------~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 238 -----------SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLN 306 (382)
T ss_pred -----------cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCC
Confidence 2335677777777654332 1134457889999988876554432211 11336788888888
Q ss_pred cCC
Q 003203 659 NNP 661 (839)
Q Consensus 659 ~~~ 661 (839)
+|.
T Consensus 307 gN~ 309 (382)
T KOG1909|consen 307 GNR 309 (382)
T ss_pred ccc
Confidence 875
No 120
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.6e-05 Score=87.45 Aligned_cols=183 Identities=15% Similarity=0.086 Sum_probs=113.1
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHHHHhc-------------------cCCeE
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNVN-MIGVYGIGGVGKTALMHEVLFEAKKQN-------------------LFDQV 89 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~ 89 (839)
.|....+++|.+..++.+.+++..++.. .+.++|+.|+||||+|+.++..+.... .+..+
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 4566678999999999999999876654 467899999999999999988764210 01112
Q ss_pred EEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCCCC
Q 003203 90 IFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAHRG 163 (839)
Q Consensus 90 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~ 163 (839)
+++..+.... .+.++.+.+... .+++-++|+|+++.. ...+.+...+....+.
T Consensus 91 ~eidaas~~g---------------------vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~ 149 (486)
T PRK14953 91 IEIDAASNRG---------------------IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPR 149 (486)
T ss_pred EEEeCccCCC---------------------HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence 2222211111 122222222221 246679999999755 3345554455444445
Q ss_pred ceEEEEeCc-hhhhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHH
Q 003203 164 CKILLASRY-RDILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIV 234 (839)
Q Consensus 164 s~iivTtr~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 234 (839)
..+|++|.+ ..+..........+.+.+++.++..+.+.+.+......- -.+.+..|++.++|.+..+...
T Consensus 150 ~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i-d~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 150 TIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY-EEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred eEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 556655543 333322233456899999999999999998773322211 2345778999999977644333
No 121
>PLN03150 hypothetical protein; Provisional
Probab=98.33 E-value=1e-06 Score=101.04 Aligned_cols=102 Identities=25% Similarity=0.409 Sum_probs=64.9
Q ss_pred ccEEEeCCCccc-ccCccccCCCCCcEEEccCCCcCC--CcccCCCCCCCEEEccCCCCC-CCchhhcCCCccCeEecCC
Q 003203 433 LRGLALSEMQLL-SLPPSVHLLSNLQTLCLDQCVVGD--ISIIGNLKKLEILSLVDSDIE-RLPNEIGQLTQLRCLDLSF 508 (839)
Q Consensus 433 L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~ 508 (839)
++.|+|++|.+. .+|..++.+++|+.|+|++|.+.. |+.++.+++|++|+|++|++. .+|..++++++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 566777777666 566667777777777777776654 345667777777777777666 5666677777777777777
Q ss_pred CcCCCccCchhhcC-ccccCeEEccCCc
Q 003203 509 CRNLKVIPPNVISK-LTQLEELYMGNTS 535 (839)
Q Consensus 509 ~~~l~~~p~~~l~~-l~~L~~L~l~~~~ 535 (839)
|.....+|.. ++. +.++..+++.+|.
T Consensus 500 N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChH-HhhccccCceEEecCCc
Confidence 6655566654 333 2345555555554
No 122
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.33 E-value=7.3e-07 Score=67.77 Aligned_cols=56 Identities=34% Similarity=0.467 Sum_probs=27.0
Q ss_pred CccEEEeCCCcccccCc-cccCCCCCcEEEccCCCcCC--CcccCCCCCCCEEEccCCC
Q 003203 432 KLRGLALSEMQLLSLPP-SVHLLSNLQTLCLDQCVVGD--ISIIGNLKKLEILSLVDSD 487 (839)
Q Consensus 432 ~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~ 487 (839)
+|++|++++|.+..+|. .+..+++|++|++++|.+.. +..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555555542 33445555555555444444 2334455555555555443
No 123
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.5e-05 Score=90.19 Aligned_cols=182 Identities=12% Similarity=0.108 Sum_probs=114.8
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHHHHh---------------------ccCC
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNVN-MIGVYGIGGVGKTALMHEVLFEAKKQ---------------------NLFD 87 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------~~f~ 87 (839)
.|....+++|.+...+.|..++..+... .+.++|+.|+||||+|+.++..+... .+|+
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 3566678999999999999999877665 57899999999999999988876421 1233
Q ss_pred eEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccccCCCCCCCce
Q 003203 88 QVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS--IDLVTVGIPFGNAHRGCK 165 (839)
Q Consensus 88 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ 165 (839)
+..+..+......++. ++..++... -. .+++-++|+|+++.. ...+.+...+..-..++.
T Consensus 92 -~~~ld~~~~~~vd~Ir-~li~~~~~~---------------P~-~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 92 -IHELDAASNNSVDDIR-NLIEQVRIP---------------PQ-IGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred -eEEecccccCCHHHHH-HHHHHHhhC---------------cc-cCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 2223322222222221 121211100 00 135668899999865 345555555554445566
Q ss_pred EEEEe-CchhhhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhH
Q 003203 166 ILLAS-RYRDILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLA 230 (839)
Q Consensus 166 iivTt-r~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 230 (839)
+|++| +...+..........+++.+++.++..+.+.+.+.......+ .+.+..|++.++|..--
T Consensus 154 fIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~-~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 154 FILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE-PEALNVIAQKADGGMRD 218 (614)
T ss_pred EEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHH
Confidence 66555 444444323444678999999999999999987743322211 34578899999997653
No 124
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.5e-05 Score=90.69 Aligned_cols=198 Identities=11% Similarity=0.072 Sum_probs=116.7
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHH
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNV-NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIA 108 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 108 (839)
.|....+++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+++.+........ + ...+.-...+.+.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~--~----~~c~~c~~c~~i~ 84 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK--G----RPCGTCEMCRAIA 84 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC--C----CCCccCHHHHHHh
Confidence 456667899999999999999887665 45689999999999999999988743211100 0 0000111112222
Q ss_pred HHhhhhc---c--CCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCch-hhh
Q 003203 109 DQLCLEL---C--KGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRYR-DIL 176 (839)
Q Consensus 109 ~~l~~~~---~--~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~-~~~ 176 (839)
.....+. . .....+.++.+.+.+. .+++-++|+|+++.. ...+.+...+......+.+|++|.+. .+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 1111100 0 0111222333333222 245678999999755 34555555544444566666666543 333
Q ss_pred hhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHH
Q 003203 177 VSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIV 234 (839)
Q Consensus 177 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 234 (839)
.........+++.+++.++..+.+.+.+......- ..+.+..|++.++|.+..+...
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i-~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL-EPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 22223356789999999999999988874322211 1456789999999988654443
No 125
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.31 E-value=4.4e-06 Score=77.99 Aligned_cols=109 Identities=14% Similarity=0.050 Sum_probs=78.7
Q ss_pred CccccCCCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHH
Q 003203 25 DMWLRSNQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQ 104 (839)
Q Consensus 25 ~~~~~~~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 104 (839)
++....|....++||-++.++++.-...+++.+-+.|.||+|+||||-+..+++.+-....-+++.-.+.|......-+.
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVR 96 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVR 96 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHH
Confidence 44455566678899999999999888888999999999999999999999999987654444567777777776665554
Q ss_pred HHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 003203 105 DEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS 147 (839)
Q Consensus 105 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~ 147 (839)
..|-...... -.+-.++.-.||||.+++.
T Consensus 97 n~IK~FAQ~k--------------v~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 97 NKIKMFAQKK--------------VTLPPGRHKIIILDEADSM 125 (333)
T ss_pred HHHHHHHHhh--------------ccCCCCceeEEEeeccchh
Confidence 4443221110 0111356678899999875
No 126
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.30 E-value=2.3e-05 Score=79.14 Aligned_cols=164 Identities=15% Similarity=0.187 Sum_probs=106.4
Q ss_pred ccccchHHHHHHHHHHhcCCCe---eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHh
Q 003203 35 KSFESRKSILCDILDWLTSPNV---NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQL 111 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~~~~~---~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 111 (839)
..|-+|+.++..+...+.++.. ..|.|+|.+|.|||.+.+++.+.... ..+|+++.+.++.+.+...|+.+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHh
Confidence 4578999999999999985443 34589999999999999999988732 368999999999999999999998
Q ss_pred hhhccCCC--c--hHHHHHHHHHHH-------cCCcEEEEEeCCCCcccccccccc----C-C-CCCCCceEEEEeCchh
Q 003203 112 CLELCKGT--E--SERARTLFDRLW-------KENKILVILDDICTSIDLVTVGIP----F-G-NAHRGCKILLASRYRD 174 (839)
Q Consensus 112 ~~~~~~~~--~--~~~~~~~~~~l~-------~~~~~LlVlDdv~~~~~~~~l~~~----l-~-~~~~~s~iivTtr~~~ 174 (839)
+....+.. . .+........+. .++.++||||+++...+.++.... + . -..+.. +|+++-...
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils~~~~ 159 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILSAPSC 159 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEecccc
Confidence 52221111 1 122222222221 146899999999876544432111 0 0 112333 344443322
Q ss_pred hh-hh-hcCc--cceEEccCCCHHHHHHHHHHHh
Q 003203 175 IL-VS-EMHS--QYNYCVSVLNKEEAWSLFKKMV 204 (839)
Q Consensus 175 ~~-~~-~~~~--~~~~~l~~L~~~ea~~Lf~~~~ 204 (839)
.. .. .++. ..++..+..+.+|..+++.+--
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 21 11 1222 3467788899999999997755
No 127
>PLN03150 hypothetical protein; Provisional
Probab=98.30 E-value=1.7e-06 Score=99.18 Aligned_cols=108 Identities=20% Similarity=0.326 Sum_probs=92.7
Q ss_pred CccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccc-ccCccccCCCCCcEEEccCCCcCC--CcccCCCCCCCEEEc
Q 003203 407 QLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLL-SLPPSVHLLSNLQTLCLDQCVVGD--ISIIGNLKKLEILSL 483 (839)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l 483 (839)
.++.|.+.++.....+|..+ +++++|+.|+|++|.+. .+|..++.+++|++|+|++|.+.. |..+++|++|++|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 37889999988777788765 89999999999999998 789999999999999999999876 578999999999999
Q ss_pred cCCCCC-CCchhhcCC-CccCeEecCCCcCCCcc
Q 003203 484 VDSDIE-RLPNEIGQL-TQLRCLDLSFCRNLKVI 515 (839)
Q Consensus 484 ~~~~l~-~lp~~i~~l-~~L~~L~l~~~~~l~~~ 515 (839)
++|.++ .+|..++.+ .++..+++.+|..+-..
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCC
Confidence 999888 889888764 56788888887644433
No 128
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.29 E-value=1.4e-05 Score=78.68 Aligned_cols=163 Identities=21% Similarity=0.173 Sum_probs=95.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCC
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKEN 135 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 135 (839)
...+.|+|+.|+|||.|.+++++.......-..++|++ ..++...+...+... ....+...+. .
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~--------~~~~~~~~~~--~ 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG--------EIEEFKDRLR--S 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT--------SHHHHHHHHC--T
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc--------cchhhhhhhh--c
Confidence 34689999999999999999999987653333466763 344555555544321 1223444442 4
Q ss_pred cEEEEEeCCCCccc---cc-cccccCCC-CCCCceEEEEeCchhhh--------hhhcCccceEEccCCCHHHHHHHHHH
Q 003203 136 KILVILDDICTSID---LV-TVGIPFGN-AHRGCKILLASRYRDIL--------VSEMHSQYNYCVSVLNKEEAWSLFKK 202 (839)
Q Consensus 136 ~~LlVlDdv~~~~~---~~-~l~~~l~~-~~~~s~iivTtr~~~~~--------~~~~~~~~~~~l~~L~~~ea~~Lf~~ 202 (839)
-=+|++||++.... |. .+...+.. ...|.+||+|++..... .+.....-.+++++.++++-.+++.+
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 56889999976421 21 12111111 12567899999655321 11233356899999999999999999
Q ss_pred HhCCCCCCcchHHHHHHHHHHhCCchhHHHHHH
Q 003203 203 MVGDYVEDSDLESIAIQVANECGGLPLAIVIVA 235 (839)
Q Consensus 203 ~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 235 (839)
++..... .-.+++++-|++.+.+..-.+..+-
T Consensus 178 ~a~~~~~-~l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 178 KAKERGI-ELPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp HHHHTT---S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred HHHHhCC-CCcHHHHHHHHHhhcCCHHHHHHHH
Confidence 9843221 1235667778888777665554443
No 129
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=2.6e-05 Score=80.82 Aligned_cols=196 Identities=12% Similarity=0.054 Sum_probs=117.4
Q ss_pred CccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHHHHhc-------------cCCeEEEEEEecCCC
Q 003203 34 YKSFESRKSILCDILDWLTSPNV-NMIGVYGIGGVGKTALMHEVLFEAKKQN-------------LFDQVIFVLASSTAN 99 (839)
Q Consensus 34 ~~~fvgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~-------------~f~~~~wv~~~~~~~ 99 (839)
..+++|.+...+.+.+.+..++. +...++|+.|+||+++|..+++.+-... .+....|+.-....+
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 35689999999999999988775 7899999999999999999988864321 112234442210000
Q ss_pred HHHHHHHHHHHhh--hhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccccCCCCCCCceEEEEe-
Q 003203 100 VKRIQDEIADQLC--LELCKGTESERARTLFDRLW----KENKILVILDDICTSI--DLVTVGIPFGNAHRGCKILLAS- 170 (839)
Q Consensus 100 ~~~~~~~i~~~l~--~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTt- 170 (839)
-..+-.+-+...+ ......-..+.++.+.+.+. .+++-++|+|+++... ...++...+..-. .+.+|++|
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEEC
Confidence 0001011111111 11111222344555555553 2567789999997653 3444444443222 33455554
Q ss_pred CchhhhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHH
Q 003203 171 RYRDILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIV 234 (839)
Q Consensus 171 r~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 234 (839)
+...+..+-......+++.++++++..+.+.+........ .....++..++|.|......
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~----~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN----INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch----hHHHHHHHHcCCCHHHHHHH
Confidence 4444444344557789999999999999999876322111 11357899999999765443
No 130
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.27 E-value=1e-06 Score=66.93 Aligned_cols=60 Identities=27% Similarity=0.449 Sum_probs=52.6
Q ss_pred CCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccC-ccccCCCCCcEEEccCCCc
Q 003203 406 PQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLP-PSVHLLSNLQTLCLDQCVV 466 (839)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~ 466 (839)
++|++|.+.+|. +..+|...|.++++|++|++++|.+..+| ..+..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578899999885 57888889999999999999999999885 5789999999999999864
No 131
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.26 E-value=1.4e-05 Score=87.38 Aligned_cols=167 Identities=15% Similarity=0.116 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCc
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENK 136 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (839)
.-+.|+|..|+|||.|++.+++.......-..+++++ ..++...+...++... +......+.+. ..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~------~~~~~~~~~~~--~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH------KEIEQFKNEIC--QN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh------hHHHHHHHHhc--cC
Confidence 4588999999999999999999876543333455553 3456666666654311 12233334432 44
Q ss_pred EEEEEeCCCCcc---c-cccccccCCC-CCCCceEEEEeCchhh-h-------hhhcCccceEEccCCCHHHHHHHHHHH
Q 003203 137 ILVILDDICTSI---D-LVTVGIPFGN-AHRGCKILLASRYRDI-L-------VSEMHSQYNYCVSVLNKEEAWSLFKKM 203 (839)
Q Consensus 137 ~LlVlDdv~~~~---~-~~~l~~~l~~-~~~~s~iivTtr~~~~-~-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 203 (839)
-+||+||+.... . .+.+...+.. ...|..||+|+..... . .+.....-.+.+++++.++-.++++++
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 588999997542 1 1222222221 1244568888764421 1 112333457789999999999999999
Q ss_pred hCCCCC-CcchHHHHHHHHHHhCCchhHHHHHHHH
Q 003203 204 VGDYVE-DSDLESIAIQVANECGGLPLAIVIVARA 237 (839)
Q Consensus 204 ~~~~~~-~~~~~~~~~~I~~~~~G~Plai~~~~~~ 237 (839)
+..... ..-.+++.+-|++.++|.|-.+.-+...
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 843211 1233677889999999999876665543
No 132
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.25 E-value=2.5e-05 Score=78.11 Aligned_cols=191 Identities=13% Similarity=0.085 Sum_probs=114.3
Q ss_pred HHHHHHHHHhcC---CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCC----eEEEEEEecCCCHHHHHHHHHHHhhhh
Q 003203 42 SILCDILDWLTS---PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFD----QVIFVLASSTANVKRIQDEIADQLCLE 114 (839)
Q Consensus 42 ~~~~~l~~~l~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~----~~~wv~~~~~~~~~~~~~~i~~~l~~~ 114 (839)
+.+++|.+++.. ...+-+.|+|.+|+|||++++++.........-+ .++.+..-..++...++..|+.+++..
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 455666666663 3456799999999999999999998765432111 266677778889999999999999987
Q ss_pred ccCCCchHHHHH-HHHHHHcCCcEEEEEeCCCCcc-----ccccc---cccCCCCCCCceEEEEeCchhhhhhhc----C
Q 003203 115 LCKGTESERART-LFDRLWKENKILVILDDICTSI-----DLVTV---GIPFGNAHRGCKILLASRYRDILVSEM----H 181 (839)
Q Consensus 115 ~~~~~~~~~~~~-~~~~l~~~~~~LlVlDdv~~~~-----~~~~l---~~~l~~~~~~s~iivTtr~~~~~~~~~----~ 181 (839)
............ ...-+..-+--+||+|++++.- +-..+ ...+.+.-.=+-|.+-|++.--+-... .
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~ 203 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS 203 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh
Confidence 755444333333 3333433456688999998741 11111 112222223345556555433221000 1
Q ss_pred ccceEEccCCCH-HHHHHHHHHHhC----CCCCCcchHHHHHHHHHHhCCchhHHH
Q 003203 182 SQYNYCVSVLNK-EEAWSLFKKMVG----DYVEDSDLESIAIQVANECGGLPLAIV 232 (839)
Q Consensus 182 ~~~~~~l~~L~~-~ea~~Lf~~~~~----~~~~~~~~~~~~~~I~~~~~G~Plai~ 232 (839)
....+.++.... +|...|+..... .....-...+++..|...++|+.--+.
T Consensus 204 RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 204 RFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred ccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 134566777664 455555544431 112222346789999999999875443
No 133
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.25 E-value=1e-05 Score=96.01 Aligned_cols=157 Identities=17% Similarity=0.216 Sum_probs=95.4
Q ss_pred ccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhcc---C-CeEEEEEEecCCCHHHHHHHHHHH
Q 003203 35 KSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNL---F-DQVIFVLASSTANVKRIQDEIADQ 110 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~---f-~~~~wv~~~~~~~~~~~~~~i~~~ 110 (839)
.+++||++++++++++|......-+.++|++|+|||++|+.++.+....+. . +..+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~------ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL------ 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh------
Confidence 568999999999999998766667789999999999999999998754211 1 233442 1 111111
Q ss_pred hhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc---------cccccccCCCCCCCceEEEEeCchhhhh----
Q 003203 111 LCLELCKGTESERARTLFDRLWKENKILVILDDICTSID---------LVTVGIPFGNAHRGCKILLASRYRDILV---- 177 (839)
Q Consensus 111 l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~---------~~~l~~~l~~~~~~s~iivTtr~~~~~~---- 177 (839)
..........+.+..+++.+.+.++.+|++|+++.... ...+..+.. .....++|.+|...+...
T Consensus 248 -ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l-~rg~l~~IgaTt~~ey~~~ie~ 325 (821)
T CHL00095 248 -AGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPAL-ARGELQCIGATTLDEYRKHIEK 325 (821)
T ss_pred -ccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHH-hCCCcEEEEeCCHHHHHHHHhc
Confidence 11111122334555666666556789999999963311 111111111 112356666666554311
Q ss_pred --hhcCccceEEccCCCHHHHHHHHHHHh
Q 003203 178 --SEMHSQYNYCVSVLNKEEAWSLFKKMV 204 (839)
Q Consensus 178 --~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 204 (839)
........+.+...+.++...+++...
T Consensus 326 D~aL~rRf~~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 326 DPALERRFQPVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred CHHHHhcceEEecCCCCHHHHHHHHHHHH
Confidence 112224577889999999988887544
No 134
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=3.5e-05 Score=86.27 Aligned_cols=194 Identities=12% Similarity=0.102 Sum_probs=114.1
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHH
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNVN-MIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIA 108 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 108 (839)
.|....+++|.+..++.|..++.+++.+ .+.++|+.|+||||+|+.+++.+........ ..+....+-.. +.
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C~~----i~ 83 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSCKS----ID 83 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHHHH----HH
Confidence 4666778999999999999999876654 5789999999999999999988653211100 00000000000 00
Q ss_pred HHhhh-----hccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCch-hhh
Q 003203 109 DQLCL-----ELCKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRYR-DIL 176 (839)
Q Consensus 109 ~~l~~-----~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~-~~~ 176 (839)
..-.. ........+.+..+.+.+. .+++-++|+|+++.. ..++.+...+........+|++|... .+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 00000 0000011222222222211 246668999999865 34555655555444566666666543 333
Q ss_pred hhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHH
Q 003203 177 VSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAI 231 (839)
Q Consensus 177 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 231 (839)
.........+++++++.++..+.+.+.+......- -++.+..|++.++|.+-.+
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i-d~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY-EDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 22233356789999999999999988773322211 2455778999999987543
No 135
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=3.1e-05 Score=87.67 Aligned_cols=199 Identities=13% Similarity=0.072 Sum_probs=116.2
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHH
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNV-NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIA 108 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 108 (839)
.|.....++|.+...+.|..++..++. +.+.++|+.|+||||+|+.+++.+........ .. .....-+..+.+.
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-~~----~~Cg~C~~C~~i~ 85 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-TP----EPCGKCELCRAIA 85 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-CC----CCCcccHHHHHHh
Confidence 355667899999999999999987654 57889999999999999999998754211100 00 0000111111111
Q ss_pred HHhhh-----hccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCch-hhh
Q 003203 109 DQLCL-----ELCKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRYR-DIL 176 (839)
Q Consensus 109 ~~l~~-----~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~-~~~ 176 (839)
..... ........+.++.+..... .+++-++|+|+++.. +..+.+...+..-.....+|++|.+. .+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 11100 0001122233333333332 245668899999865 34555555554433445555555443 333
Q ss_pred hhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHH
Q 003203 177 VSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIV 234 (839)
Q Consensus 177 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 234 (839)
.........+++.+++.++..+.+.+.+......-+ .+.+..|++.++|.+..+...
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is-~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE-PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 322334567889999999999888887743222211 345788999999987654433
No 136
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.21 E-value=2.2e-05 Score=85.83 Aligned_cols=163 Identities=17% Similarity=0.216 Sum_probs=95.1
Q ss_pred CCCCccccchHHHHHHHHHHhcC-------------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhcc---CCeEEEEEE
Q 003203 31 NQGYKSFESRKSILCDILDWLTS-------------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNL---FDQVIFVLA 94 (839)
Q Consensus 31 ~~~~~~fvgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~---f~~~~wv~~ 94 (839)
.....++.|.+..++++.+.+.- ...+-+.++|++|+|||++|+.+++....... .....|+++
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v 257 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNI 257 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEec
Confidence 34457788999999999888641 12356899999999999999999998753211 123445554
Q ss_pred ecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHH----HcCCcEEEEEeCCCCcc---------c-----ccccccc
Q 003203 95 SSTANVKRIQDEIADQLCLELCKGTESERARTLFDRL----WKENKILVILDDICTSI---------D-----LVTVGIP 156 (839)
Q Consensus 95 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l----~~~~~~LlVlDdv~~~~---------~-----~~~l~~~ 156 (839)
+... +.... .+ .....+..+++.. ..+++.+|++|+++... + +..+...
T Consensus 258 ~~~e----Ll~ky---vG------ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 258 KGPE----LLNKY---VG------ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred cchh----hcccc---cc------hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 4321 11000 00 0111122222222 23578999999997431 0 1122222
Q ss_pred CCC--CCCCceEEEEeCchhhhhhh-c---CccceEEccCCCHHHHHHHHHHHhCC
Q 003203 157 FGN--AHRGCKILLASRYRDILVSE-M---HSQYNYCVSVLNKEEAWSLFKKMVGD 206 (839)
Q Consensus 157 l~~--~~~~s~iivTtr~~~~~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~ 206 (839)
+.. ...+..||.||...+..... . .....++++..+.++..++|+.+...
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 221 12345566666655443211 1 22456899999999999999998854
No 137
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.21 E-value=6.2e-06 Score=85.85 Aligned_cols=91 Identities=16% Similarity=0.180 Sum_probs=63.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC--CCHHHHHHHHHHHhhhhccCCCch------HHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST--ANVKRIQDEIADQLCLELCKGTES------ERARTL 127 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~------~~~~~~ 127 (839)
-+.++|+|++|+|||||++.+++.+..+ +|+..+|+.+.+. .++.++++.+...+-...-+.... +.+...
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 3678999999999999999999988754 8999999999866 688999998854332221111111 112222
Q ss_pred HHHH-HcCCcEEEEEeCCCCc
Q 003203 128 FDRL-WKENKILVILDDICTS 147 (839)
Q Consensus 128 ~~~l-~~~~~~LlVlDdv~~~ 147 (839)
.+++ ..+++++|++|++...
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHH
Confidence 2222 3589999999999753
No 138
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.21 E-value=1.1e-05 Score=82.16 Aligned_cols=155 Identities=14% Similarity=0.146 Sum_probs=82.0
Q ss_pred ccccchHHHHHHHHH---Hhc------------CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCC
Q 003203 35 KSFESRKSILCDILD---WLT------------SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTAN 99 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~---~l~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 99 (839)
..++|.+...++|.+ +.. .+....+.++|++|+||||+|+.+++.....+.-....++.++..
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA-- 83 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH--
Confidence 457887766655543 331 123456889999999999999999987643221111123333221
Q ss_pred HHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc----------ccccccccCCCCCCCceEEEE
Q 003203 100 VKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI----------DLVTVGIPFGNAHRGCKILLA 169 (839)
Q Consensus 100 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~----------~~~~l~~~l~~~~~~s~iivT 169 (839)
++... .. ... ......+++.. ..-+|++|+++... ..+.+...+........+|++
T Consensus 84 --~l~~~---~~-----g~~-~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila 149 (261)
T TIGR02881 84 --DLVGE---YI-----GHT-AQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILA 149 (261)
T ss_pred --Hhhhh---hc-----cch-HHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEec
Confidence 11111 00 011 11122233222 23488999997521 233333333333333455566
Q ss_pred eCchhhh-------hhhcCccceEEccCCCHHHHHHHHHHHhC
Q 003203 170 SRYRDIL-------VSEMHSQYNYCVSVLNKEEAWSLFKKMVG 205 (839)
Q Consensus 170 tr~~~~~-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 205 (839)
+...+.. .........+++++++.+|-.+++.+.+.
T Consensus 150 ~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 150 GYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 5443321 00011235689999999999999998884
No 139
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.18 E-value=2.6e-05 Score=83.53 Aligned_cols=179 Identities=12% Similarity=0.201 Sum_probs=105.2
Q ss_pred cCCCCCccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEe
Q 003203 29 RSNQGYKSFESRKSILCDILDWLT----S---------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLAS 95 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~----~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 95 (839)
.|.....++.|-+...++|.+.+. . ...+-+.++|++|+|||++|+.+++..... | +.+.
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~--f-----i~i~ 211 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT--F-----IRVV 211 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEe
Confidence 344556778999988888887764 1 234678999999999999999999876422 2 2222
Q ss_pred cCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc------------c----cccccccCC-
Q 003203 96 STANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI------------D----LVTVGIPFG- 158 (839)
Q Consensus 96 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~------------~----~~~l~~~l~- 158 (839)
. ..+... .++ ........+++......+.+|++|+++... . +..+...+.
T Consensus 212 ~----s~l~~k---~~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~ 278 (398)
T PTZ00454 212 G----SEFVQK---YLG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDG 278 (398)
T ss_pred h----HHHHHH---hcc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhc
Confidence 1 111111 111 112233445555545688999999987421 0 111111111
Q ss_pred -CCCCCceEEEEeCchhhhhhh-c---CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchh
Q 003203 159 -NAHRGCKILLASRYRDILVSE-M---HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPL 229 (839)
Q Consensus 159 -~~~~~s~iivTtr~~~~~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl 229 (839)
....+..||+||...+..... . .....++++..+.++-.++|+.+........+.. ..++++.+.|.--
T Consensus 279 ~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd--~~~la~~t~g~sg 352 (398)
T PTZ00454 279 FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD--LEDFVSRPEKISA 352 (398)
T ss_pred cCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC--HHHHHHHcCCCCH
Confidence 122456788888866543211 2 2245788999999998899987774433222221 4567777777643
No 140
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=2.3e-05 Score=88.53 Aligned_cols=183 Identities=10% Similarity=0.116 Sum_probs=113.7
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHHHHhccCC-------------------eE
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNVN-MIGVYGIGGVGKTALMHEVLFEAKKQNLFD-------------------QV 89 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~-------------------~~ 89 (839)
.|....+++|.+...+.|.+++..++.. .+.++|+.|+||||+|+.+++.+....... .+
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~ 90 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV 90 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 3566788999999999999999877764 568999999999999999988864321110 01
Q ss_pred EEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccccCCCCCCC
Q 003203 90 IFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLW----KENKILVILDDICTSI--DLVTVGIPFGNAHRG 163 (839)
Q Consensus 90 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~ 163 (839)
+.+....... .+.++.+..... .+++-++|+|+++... ..+.+...+..-...
T Consensus 91 ~eid~~s~~~---------------------v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~ 149 (576)
T PRK14965 91 FEIDGASNTG---------------------VDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPH 149 (576)
T ss_pred eeeeccCccC---------------------HHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCC
Confidence 1111111111 122223332221 2355678899997653 344555454444456
Q ss_pred ceEEEEeCc-hhhhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCch-hHHHHH
Q 003203 164 CKILLASRY-RDILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLP-LAIVIV 234 (839)
Q Consensus 164 s~iivTtr~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~P-lai~~~ 234 (839)
+.+|++|.+ ..+..........+++.+++.++..+.+...+......-+ .+....|++.++|.. .|+..+
T Consensus 150 ~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~-~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 150 VKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS-DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred eEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCCHHHHHHHH
Confidence 666655544 4444323344568899999999999999887743222211 345778999999865 455444
No 141
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.14 E-value=0.00011 Score=71.17 Aligned_cols=128 Identities=15% Similarity=0.185 Sum_probs=78.3
Q ss_pred cCccccCCCCCccccchHHHHHHHHHHhc----CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCC
Q 003203 24 KDMWLRSNQGYKSFESRKSILCDILDWLT----SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTAN 99 (839)
Q Consensus 24 ~~~~~~~~~~~~~fvgR~~~~~~l~~~l~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 99 (839)
.++....+.....++|-+.+.+.|.+-.. .....-+.+||..|.|||++++.+.+....+. -..+-|.-.+-.+
T Consensus 16 ~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G--LRlIev~k~~L~~ 93 (249)
T PF05673_consen 16 EPIKHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG--LRLIEVSKEDLGD 93 (249)
T ss_pred EecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEECHHHhcc
Confidence 35555566777889999998888876543 34456788999999999999999999887653 1233332222222
Q ss_pred HHHHHHHHHHHhhhhccCCCchHHHHHHHHHHH-cCCcEEEEEeCCCC---cccccccccc----CCCCCCCceEEEEeC
Q 003203 100 VKRIQDEIADQLCLELCKGTESERARTLFDRLW-KENKILVILDDICT---SIDLVTVGIP----FGNAHRGCKILLASR 171 (839)
Q Consensus 100 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~~~~~LlVlDdv~~---~~~~~~l~~~----l~~~~~~s~iivTtr 171 (839)
+.++ ...+. ...|++|++||+.= +.....++.. +.....+..|..||.
T Consensus 94 l~~l------------------------~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSN 149 (249)
T PF05673_consen 94 LPEL------------------------LDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSN 149 (249)
T ss_pred HHHH------------------------HHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecc
Confidence 2222 22222 35899999999852 2223333222 223334555666666
Q ss_pred chhhhh
Q 003203 172 YRDILV 177 (839)
Q Consensus 172 ~~~~~~ 177 (839)
.++...
T Consensus 150 RRHLv~ 155 (249)
T PF05673_consen 150 RRHLVP 155 (249)
T ss_pred hhhccc
Confidence 666543
No 142
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=5.8e-05 Score=84.94 Aligned_cols=178 Identities=13% Similarity=0.114 Sum_probs=112.0
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHHHHhcc--------------------CCe
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNV-NMIGVYGIGGVGKTALMHEVLFEAKKQNL--------------------FDQ 88 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~--------------------f~~ 88 (839)
.|....+++|.+..++.+.+++..++. +.+.++|+.|+||||+|+.+++.+..... ++
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d- 89 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD- 89 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC-
Confidence 466778899999999999999986654 45678999999999999999887643221 11
Q ss_pred EEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCCC
Q 003203 89 VIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAHR 162 (839)
Q Consensus 89 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~ 162 (839)
++.+..+.. ...+.++.+..... .+++-++|+|+++.. .....+...+.....
T Consensus 90 v~eidaas~---------------------~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~ 148 (559)
T PRK05563 90 VIEIDAASN---------------------NGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPA 148 (559)
T ss_pred eEEeecccc---------------------CCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCC
Confidence 122221111 11222333333322 246678899999865 345555544443344
Q ss_pred CceEEEEeCc-hhhhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhH
Q 003203 163 GCKILLASRY-RDILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLA 230 (839)
Q Consensus 163 ~s~iivTtr~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 230 (839)
...+|++|.. ..+..........+++.+++.++..+.+...+......-+ .+....|++.++|.+..
T Consensus 149 ~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~-~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 149 HVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE-DEALRLIARAAEGGMRD 216 (559)
T ss_pred CeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHH
Confidence 5555555543 3333322334567899999999999999887743222111 34577889999987754
No 143
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.13 E-value=4.3e-05 Score=90.92 Aligned_cols=157 Identities=14% Similarity=0.159 Sum_probs=94.1
Q ss_pred CCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccC----CeEEE-EEEecCCCHHHHHHHH
Q 003203 33 GYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLF----DQVIF-VLASSTANVKRIQDEI 107 (839)
Q Consensus 33 ~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f----~~~~w-v~~~~~~~~~~~~~~i 107 (839)
...+++||+.++.+++..|.......+.++|++|+|||++|+.++++....... ...+| +.++ .+.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l~--- 241 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------ALI--- 241 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HHh---
Confidence 446799999999999999987766777899999999999999999987543211 22222 2211 111
Q ss_pred HHHhhhhccCCCchHHHHHHHHHHHc-CCcEEEEEeCCCCcc----------ccccccccCCCCCCCceEEEEeCchhhh
Q 003203 108 ADQLCLELCKGTESERARTLFDRLWK-ENKILVILDDICTSI----------DLVTVGIPFGNAHRGCKILLASRYRDIL 176 (839)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~l~~-~~~~LlVlDdv~~~~----------~~~~l~~~l~~~~~~s~iivTtr~~~~~ 176 (839)
............+..+++.+.. +++.+|++|+++... ..+.+...+ . ....++|.+|...+.-
T Consensus 242 ----a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l-~-~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 242 ----AGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL-A-RGELHCIGATTLDEYR 315 (852)
T ss_pred ----hcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh-h-cCceEEEEeCcHHHHH
Confidence 0000111223344555555533 468999999997432 111122111 1 1234555555544331
Q ss_pred ------hhhcCccceEEccCCCHHHHHHHHHHHh
Q 003203 177 ------VSEMHSQYNYCVSVLNKEEAWSLFKKMV 204 (839)
Q Consensus 177 ------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 204 (839)
.........+.++..+.++..++++...
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1011223567899999999999998765
No 144
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.10 E-value=8.9e-05 Score=76.14 Aligned_cols=132 Identities=12% Similarity=0.077 Sum_probs=74.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcE
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKI 137 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 137 (839)
-+.++|++|+|||++|+.+++...........-|+.++. .++ ...+.. ... .....+++.. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g----~~~-~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIG----HTA-PKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcc----cch-HHHHHHHHHc---cCc
Confidence 578999999999999998888775433222222443332 122 221111 111 1122233332 335
Q ss_pred EEEEeCCCCc-----------cccccccccCCCCCCCceEEEEeCchhhhhh-h------cCccceEEccCCCHHHHHHH
Q 003203 138 LVILDDICTS-----------IDLVTVGIPFGNAHRGCKILLASRYRDILVS-E------MHSQYNYCVSVLNKEEAWSL 199 (839)
Q Consensus 138 LlVlDdv~~~-----------~~~~~l~~~l~~~~~~s~iivTtr~~~~~~~-~------~~~~~~~~l~~L~~~ea~~L 199 (839)
+|++|+++.. +..+.+...+.....+.+||+++.....-.. . ......+++++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8889999632 1123333334344456677777654322110 0 11245799999999999999
Q ss_pred HHHHhC
Q 003203 200 FKKMVG 205 (839)
Q Consensus 200 f~~~~~ 205 (839)
+...+.
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 988883
No 145
>CHL00181 cbbX CbbX; Provisional
Probab=98.09 E-value=9.7e-05 Score=75.74 Aligned_cols=132 Identities=11% Similarity=0.070 Sum_probs=73.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcE
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKI 137 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 137 (839)
.+.++|++|+||||+|+.+++.......-...-|+.++. .++ ...+.. ... .....+++.. ..-
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l----~~~~~g----~~~-~~~~~~l~~a---~gg 124 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDL----VGQYIG----HTA-PKTKEVLKKA---MGG 124 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHH----HHHHhc----cch-HHHHHHHHHc---cCC
Confidence 578999999999999999988765332211112444442 122 221111 111 1112233322 234
Q ss_pred EEEEeCCCCc-----------cccccccccCCCCCCCceEEEEeCchhhhh-------hhcCccceEEccCCCHHHHHHH
Q 003203 138 LVILDDICTS-----------IDLVTVGIPFGNAHRGCKILLASRYRDILV-------SEMHSQYNYCVSVLNKEEAWSL 199 (839)
Q Consensus 138 LlVlDdv~~~-----------~~~~~l~~~l~~~~~~s~iivTtr~~~~~~-------~~~~~~~~~~l~~L~~~ea~~L 199 (839)
+|++|+++.. +..+.+...+.....+.+||+++....+.. ........+++++++.+|..++
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I 204 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQI 204 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHH
Confidence 8899999642 122333333333445567777776443311 0112345799999999999999
Q ss_pred HHHHhC
Q 003203 200 FKKMVG 205 (839)
Q Consensus 200 f~~~~~ 205 (839)
+...+.
T Consensus 205 ~~~~l~ 210 (287)
T CHL00181 205 AKIMLE 210 (287)
T ss_pred HHHHHH
Confidence 988883
No 146
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.08 E-value=1.5e-05 Score=89.37 Aligned_cols=57 Identities=14% Similarity=0.189 Sum_probs=47.7
Q ss_pred CccccCCCCCccccchHHHHHHHHHHhcC-----CCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 25 DMWLRSNQGYKSFESRKSILCDILDWLTS-----PNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 25 ~~~~~~~~~~~~fvgR~~~~~~l~~~l~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
++....|....+++|.++.++++..|+.. ...++++|+|++|+||||+++.++....
T Consensus 74 W~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 74 WVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred hHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 44467778889999999999999999873 2346799999999999999999998764
No 147
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.06 E-value=2.4e-05 Score=90.36 Aligned_cols=157 Identities=16% Similarity=0.212 Sum_probs=93.9
Q ss_pred ccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhc-cC---CeEEEEEEecCCCHHHHHHHHHHH
Q 003203 35 KSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQN-LF---DQVIFVLASSTANVKRIQDEIADQ 110 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~f---~~~~wv~~~~~~~~~~~~~~i~~~ 110 (839)
..++||++++.++++.|......-+.++|++|+|||++|+.+++.....+ ++ +..+|. .+...+ .
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~-----l~~~~l----l-- 254 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-----LDIGSL----L-- 254 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe-----ccHHHH----h--
Confidence 57999999999999999875556667999999999999999998764332 11 334442 111111 1
Q ss_pred hhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc--------cccc--ccccCCCCCCCceEEEEeCchhhhh---
Q 003203 111 LCLELCKGTESERARTLFDRLWKENKILVILDDICTSI--------DLVT--VGIPFGNAHRGCKILLASRYRDILV--- 177 (839)
Q Consensus 111 l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~--------~~~~--l~~~l~~~~~~s~iivTtr~~~~~~--- 177 (839)
..........+....+.+.+.+.++.+|++|+++... +.+. +..++.. ....++|-+|...+...
T Consensus 255 -aG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~~E~~~~~~ 332 (758)
T PRK11034 255 -AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIFE 332 (758)
T ss_pred -cccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCChHHHHHHhh
Confidence 0111111223344455555555567899999997431 1111 1111111 12345555555443211
Q ss_pred ---hhcCccceEEccCCCHHHHHHHHHHHh
Q 003203 178 ---SEMHSQYNYCVSVLNKEEAWSLFKKMV 204 (839)
Q Consensus 178 ---~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 204 (839)
........+.+++.+.+++.++++...
T Consensus 333 ~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 333 KDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 011223579999999999999998765
No 148
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.06 E-value=4.1e-06 Score=57.99 Aligned_cols=41 Identities=41% Similarity=0.552 Sum_probs=25.8
Q ss_pred CCccEEEeCCCcccccCccccCCCCCcEEEccCCCcCCCcc
Q 003203 431 SKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGDISI 471 (839)
Q Consensus 431 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~ 471 (839)
++|++|++++|.++++|+.+++|++|++|++++|.+.+++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 35677777777777776666677777777777766655433
No 149
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.05 E-value=3.4e-05 Score=83.06 Aligned_cols=177 Identities=14% Similarity=0.166 Sum_probs=103.3
Q ss_pred CCCCCccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec
Q 003203 30 SNQGYKSFESRKSILCDILDWLT----S---------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS 96 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~----~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 96 (839)
|...+.++.|.+..++++.+.+. . ...+-+.++|++|+|||++|+.+++.... .| +.+..
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~--~f-----i~V~~ 250 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA--TF-----LRVVG 250 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC--CE-----EEEec
Confidence 34555678899999998888774 1 12356889999999999999999987642 22 22221
Q ss_pred CCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc----------------cccccccCC--
Q 003203 97 TANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID----------------LVTVGIPFG-- 158 (839)
Q Consensus 97 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~----------------~~~l~~~l~-- 158 (839)
. + +... .++ .....+..+++....+.+.+|++|+++.... +..+...+.
T Consensus 251 s-e---L~~k---~~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~ 317 (438)
T PTZ00361 251 S-E---LIQK---YLG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGF 317 (438)
T ss_pred c-h---hhhh---hcc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhh
Confidence 1 1 1110 011 1112233444444446788999999763210 001111111
Q ss_pred CCCCCceEEEEeCchhhhhhhc----CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCch
Q 003203 159 NAHRGCKILLASRYRDILVSEM----HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLP 228 (839)
Q Consensus 159 ~~~~~s~iivTtr~~~~~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~P 228 (839)
....+.+||+||...+...... .....++++..+.++..++|..+........+. ....++..+.|.-
T Consensus 318 ~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dv--dl~~la~~t~g~s 389 (438)
T PTZ00361 318 DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDV--DLEEFIMAKDELS 389 (438)
T ss_pred cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCc--CHHHHHHhcCCCC
Confidence 1134667888888665543221 224678999999999999999887543322221 1345666666653
No 150
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.04 E-value=6.9e-05 Score=88.82 Aligned_cols=158 Identities=13% Similarity=0.137 Sum_probs=93.3
Q ss_pred CCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccC----C-eEEEEEEecCCCHHHHHHH
Q 003203 32 QGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLF----D-QVIFVLASSTANVKRIQDE 106 (839)
Q Consensus 32 ~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f----~-~~~wv~~~~~~~~~~~~~~ 106 (839)
....+++||+.++.++++.|.......+.++|++|+|||++|+.++.+....... . .++++.++.- ..
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l------~a- 247 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL------VA- 247 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh------hh-
Confidence 3456799999999999999987777778899999999999999999987532111 1 2333322221 00
Q ss_pred HHHHhhhhccCCCchHHHHHHHHHHH-cCCcEEEEEeCCCCccc----------cccccccCCCCCCCceEEEEeCchhh
Q 003203 107 IADQLCLELCKGTESERARTLFDRLW-KENKILVILDDICTSID----------LVTVGIPFGNAHRGCKILLASRYRDI 175 (839)
Q Consensus 107 i~~~l~~~~~~~~~~~~~~~~~~~l~-~~~~~LlVlDdv~~~~~----------~~~l~~~l~~~~~~s~iivTtr~~~~ 175 (839)
.........+.+..+++.+. .+++.+|++|+++.... -+.+...+ . ....++|-+|...+.
T Consensus 248 ------g~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l-~-~g~l~~IgaTt~~e~ 319 (857)
T PRK10865 248 ------GAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL-A-RGELHCVGATTLDEY 319 (857)
T ss_pred ------ccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh-h-cCCCeEEEcCCCHHH
Confidence 00011112233444444443 35789999999975421 11122221 1 123456666665543
Q ss_pred h------hhhcCccceEEccCCCHHHHHHHHHHHh
Q 003203 176 L------VSEMHSQYNYCVSVLNKEEAWSLFKKMV 204 (839)
Q Consensus 176 ~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 204 (839)
. .........+.+..-+.++..++++...
T Consensus 320 r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 320 RQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1 1011223356677778999999887665
No 151
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.04 E-value=6.8e-07 Score=97.94 Aligned_cols=106 Identities=28% Similarity=0.389 Sum_probs=50.0
Q ss_pred cCCCCccEEEeCCCcccccCccccCCCCCcEEEccCCCcCCCcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecC
Q 003203 428 TGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGDISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLS 507 (839)
Q Consensus 428 ~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 507 (839)
..+++|..|++.+|.+..+...+..+++|++|++++|.|..+..+..+..|+.|++.+|.|+.+.. +..+++|+.++++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLS 170 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC-CccchhhhcccCC
Confidence 344455555555555544443344455555555555555555445555555555555555444322 2334555555555
Q ss_pred CCcCCCccCc-hhhcCccccCeEEccCCcc
Q 003203 508 FCRNLKVIPP-NVISKLTQLEELYMGNTSV 536 (839)
Q Consensus 508 ~~~~l~~~p~-~~l~~l~~L~~L~l~~~~~ 536 (839)
+|. +..+.. . +..+.+|+.+++.+|.+
T Consensus 171 ~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 171 YNR-IVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred cch-hhhhhhhh-hhhccchHHHhccCCch
Confidence 543 333322 1 23444555555554443
No 152
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.00017 Score=72.47 Aligned_cols=203 Identities=16% Similarity=0.227 Sum_probs=123.2
Q ss_pred cCCCCCccccchHHHHHHHHHHhcC-------------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEe
Q 003203 29 RSNQGYKSFESRKSILCDILDWLTS-------------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLAS 95 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 95 (839)
.|-..+..+=|-++.+++|.+.+.- +..+=|.++|++|.|||-||++|+++-... |+.+.
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-------FIrvv 217 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-------FIRVV 217 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-------EEEec
Confidence 4455567788899999999998761 234568899999999999999999887533 44443
Q ss_pred cCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc-------------c---cccccccCCC
Q 003203 96 STANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI-------------D---LVTVGIPFGN 159 (839)
Q Consensus 96 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~-------------~---~~~l~~~l~~ 159 (839)
.+ ++.+..- ......++.+++-.....+..|++|.++... . +-++...+..
T Consensus 218 gS--------ElVqKYi-----GEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG 284 (406)
T COG1222 218 GS--------ELVQKYI-----GEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG 284 (406)
T ss_pred cH--------HHHHHHh-----ccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC
Confidence 32 1221111 1123445566666656788999999987420 0 1112222221
Q ss_pred --CCCCceEEEEeCchhhhhh-hc---CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchh----
Q 003203 160 --AHRGCKILLASRYRDILVS-EM---HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPL---- 229 (839)
Q Consensus 160 --~~~~s~iivTtr~~~~~~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl---- 229 (839)
.....|||.+|...+++.- .. ..++.++++.-+.+.=.++|+-+........+.. .+.+++.+.|.-=
T Consensus 285 FD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd--~e~la~~~~g~sGAdlk 362 (406)
T COG1222 285 FDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD--LELLARLTEGFSGADLK 362 (406)
T ss_pred CCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC--HHHHHHhcCCCchHHHH
Confidence 2356789998887776421 12 2256788886666667778888876544443322 5577888877754
Q ss_pred HHHHHHHHhc--CC----ChhHHHHHHHHh
Q 003203 230 AIVIVARALR--NK----PLSEWKGALLKL 253 (839)
Q Consensus 230 ai~~~~~~L~--~~----~~~~w~~~l~~l 253 (839)
|+-+=|++++ .. +.+.+....++.
T Consensus 363 aictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 363 AICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 3444455542 22 344454444444
No 153
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.02 E-value=8.2e-08 Score=103.44 Aligned_cols=127 Identities=24% Similarity=0.270 Sum_probs=96.0
Q ss_pred CccEEEeCCCcccccCccccCCCCCcEEEccCCCcCCCcccCCCCCCCEEEccCCCCCCCchh-hcCCCccCeEecCCCc
Q 003203 432 KLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGDISIIGNLKKLEILSLVDSDIERLPNE-IGQLTQLRCLDLSFCR 510 (839)
Q Consensus 432 ~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 510 (839)
.|.+.+++.|.+..+-.++.-++.|+.|+|+.|++.+...+..|++|++|||+.|.++.+|.- ...+. |+.|.+++|.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~ 243 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA 243 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccH
Confidence 577778888888877778888888888888888888877888888888888888888877762 22333 8888888876
Q ss_pred CCCccCchhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCCEEEEEecccc
Q 003203 511 NLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAM 572 (839)
Q Consensus 511 ~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 572 (839)
++.+-. +.+|.+|+.|++++|-+. ....+.-+..+..|+.|.+.||.+-
T Consensus 244 -l~tL~g--ie~LksL~~LDlsyNll~----------~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 244 -LTTLRG--IENLKSLYGLDLSYNLLS----------EHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred -HHhhhh--HHhhhhhhccchhHhhhh----------cchhhhHHHHHHHHHHHhhcCCccc
Confidence 666654 778888888888887664 3344556666777788888877654
No 154
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.01 E-value=0.00019 Score=79.51 Aligned_cols=180 Identities=18% Similarity=0.144 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCc
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENK 136 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (839)
..+.|+|++|+|||.||+.+++....+..-..++|++.. ++..++...+... ......+.+. +.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~~ 212 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN--------TMEEFKEKYR--SV 212 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC--------cHHHHHHHHh--cC
Confidence 568999999999999999999998754322345666433 2333344333211 1122333442 34
Q ss_pred EEEEEeCCCCccc----cccccccCCC-CCCCceEEEEeCchhhh--------hhhcCccceEEccCCCHHHHHHHHHHH
Q 003203 137 ILVILDDICTSID----LVTVGIPFGN-AHRGCKILLASRYRDIL--------VSEMHSQYNYCVSVLNKEEAWSLFKKM 203 (839)
Q Consensus 137 ~LlVlDdv~~~~~----~~~l~~~l~~-~~~~s~iivTtr~~~~~--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 203 (839)
-+||+||++.... .+.+...+.. ...|..||+|+....-. .+.......+++++.+.++-.+++++.
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHH
Confidence 5889999974311 1122221111 12345578877654211 222333457999999999999999999
Q ss_pred hCCCCCCcchHHHHHHHHHHhCCchhHHHHH----HHH--hcCC--ChhHHHHHHHHh
Q 003203 204 VGDYVEDSDLESIAIQVANECGGLPLAIVIV----ARA--LRNK--PLSEWKGALLKL 253 (839)
Q Consensus 204 ~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~----~~~--L~~~--~~~~w~~~l~~l 253 (839)
+.... ..-.+++.+-|++.++|..-.+.-+ ..+ +.+. +.+..+.++...
T Consensus 293 ~~~~~-~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 293 AEEEG-IDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHcC-CCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 84321 1223567888999999886643332 222 1122 555566666654
No 155
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.01 E-value=0.00043 Score=66.67 Aligned_cols=181 Identities=14% Similarity=0.120 Sum_probs=102.8
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEe-cCCCHHHHHHHHHHHhhhhccC--CCchHHHHH-HH
Q 003203 53 SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLAS-STANVKRIQDEIADQLCLELCK--GTESERART-LF 128 (839)
Q Consensus 53 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~-~~ 128 (839)
.++.+++.++|.-|+|||++++.+...... -+... +.+. +..+...+...|...+..+... ....+.+.. +.
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~---d~~~~-v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNE---DQVAV-VVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCC---CceEE-EEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 455579999999999999999955444331 12222 3333 3345667777887777652111 112222222 23
Q ss_pred HHHHcCCc-EEEEEeCCCCc--cccccccccCC---CCCCCceEEEEeCchh-------hhhhhcCccce-EEccCCCHH
Q 003203 129 DRLWKENK-ILVILDDICTS--IDLVTVGIPFG---NAHRGCKILLASRYRD-------ILVSEMHSQYN-YCVSVLNKE 194 (839)
Q Consensus 129 ~~l~~~~~-~LlVlDdv~~~--~~~~~l~~~l~---~~~~~s~iivTtr~~~-------~~~~~~~~~~~-~~l~~L~~~ 194 (839)
....+++| +.+++||..+. ..++.++.... ....--+|++.-..+- +.........+ |++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 33345677 99999998754 23333322111 1111122333322111 11101112233 999999999
Q ss_pred HHHHHHHHHhCCCCCC--cchHHHHHHHHHHhCCchhHHHHHHHH
Q 003203 195 EAWSLFKKMVGDYVED--SDLESIAIQVANECGGLPLAIVIVARA 237 (839)
Q Consensus 195 ea~~Lf~~~~~~~~~~--~~~~~~~~~I~~~~~G~Plai~~~~~~ 237 (839)
+...+++.+.+....+ --..+....|.....|.|.+|..++..
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 9999999998332211 122456778999999999999887643
No 156
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.00 E-value=7.4e-05 Score=83.70 Aligned_cols=178 Identities=17% Similarity=0.215 Sum_probs=100.4
Q ss_pred cCCCCCccccchHHHHHHHHHHhc---C---------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec
Q 003203 29 RSNQGYKSFESRKSILCDILDWLT---S---------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS 96 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~---~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 96 (839)
.+.....+++|-+...+++.+++. . ...+-+.++|++|+|||++|+.+++..... ++.++.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------~~~i~~ 121 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-------FFSISG 121 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-------eeeccH
Confidence 344556788998877666655443 1 123458899999999999999998765321 222221
Q ss_pred CCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc----------------cccccccCC--
Q 003203 97 TANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID----------------LVTVGIPFG-- 158 (839)
Q Consensus 97 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~----------------~~~l~~~l~-- 158 (839)
.++.. .. .......+..+++......+.+|++||++.... +..+...+.
T Consensus 122 ----~~~~~----~~-----~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~ 188 (495)
T TIGR01241 122 ----SDFVE----MF-----VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 188 (495)
T ss_pred ----HHHHH----HH-----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc
Confidence 11111 10 001122334455554445778999999965310 011111111
Q ss_pred CCCCCceEEEEeCchhhhhhhc----CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCch
Q 003203 159 NAHRGCKILLASRYRDILVSEM----HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLP 228 (839)
Q Consensus 159 ~~~~~s~iivTtr~~~~~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~P 228 (839)
....+..||.||.......... .....+.++..+.++-.++|+.+........+ .....+++.+.|.-
T Consensus 189 ~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~s 260 (495)
T TIGR01241 189 GTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGFS 260 (495)
T ss_pred cCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCCC
Confidence 1223455666676554221111 23467889999999999999988854322222 12457888888753
No 157
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.99 E-value=8.1e-07 Score=97.36 Aligned_cols=132 Identities=21% Similarity=0.274 Sum_probs=108.2
Q ss_pred CCCCccEEEeCCCcccccCccccCCCCCcEEEccCCCcCCCcc-cCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecC
Q 003203 429 GMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGDISI-IGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLS 507 (839)
Q Consensus 429 ~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 507 (839)
.+..++.+++..|.+..+-..++.+.+|..|++.+|.+..+.. +..+++|++|++++|.|+.+.. +..++.|+.|+++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLS 148 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc-hhhccchhhheec
Confidence 4566777778888888766668889999999999999999877 9999999999999999998754 6788889999999
Q ss_pred CCcCCCccCchhhcCccccCeEEccCCccccccccccccccccchhh--hccCCCCCEEEEEeccccCCCcc
Q 003203 508 FCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQE--LRHLSQLTTLEIQIQDAMILPKG 577 (839)
Q Consensus 508 ~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~--l~~l~~L~~L~l~~~~~~~~~~~ 577 (839)
+|. +..+.. +..+++|+.+++++|.+. .++. +..+.+|+.+.+.+|.+..+...
T Consensus 149 ~N~-i~~~~~--~~~l~~L~~l~l~~n~i~-------------~ie~~~~~~~~~l~~l~l~~n~i~~i~~~ 204 (414)
T KOG0531|consen 149 GNL-ISDISG--LESLKSLKLLDLSYNRIV-------------DIENDELSELISLEELDLGGNSIREIEGL 204 (414)
T ss_pred cCc-chhccC--CccchhhhcccCCcchhh-------------hhhhhhhhhccchHHHhccCCchhcccch
Confidence 987 777765 677999999999999875 2233 57788888888988877765543
No 158
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=8.7e-07 Score=85.73 Aligned_cols=72 Identities=18% Similarity=0.249 Sum_probs=41.7
Q ss_pred HHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhccccccccc
Q 003203 619 ILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKI 695 (839)
Q Consensus 619 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~ 695 (839)
....++++..+.+..|+--+... .-....+|.+-.|.|..+. +.+......+..||+|..|.+.+.|-+..+
T Consensus 194 l~r~Fpnv~sv~v~e~PlK~~s~-ek~se~~p~~~~LnL~~~~----idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 194 LSRIFPNVNSVFVCEGPLKTESS-EKGSEPFPSLSCLNLGANN----IDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred HHhhcccchheeeecCcccchhh-cccCCCCCcchhhhhcccc----cccHHHHHHHcCCchhheeeccCCcccccc
Confidence 34456777777776664332211 1123456777777776652 222233336678888888888877765544
No 159
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.94 E-value=0.00013 Score=76.27 Aligned_cols=156 Identities=14% Similarity=0.146 Sum_probs=93.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccC-------------------CeEEEEEEecCCCHHHHHHHHHHHhhhhcc
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLF-------------------DQVIFVLASSTANVKRIQDEIADQLCLELC 116 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f-------------------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 116 (839)
...+.++|+.|+||||+|..+++.+-..... ....|+.-... .
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~------------------~ 83 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA------------------D 83 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC------------------C
Confidence 3468899999999999999999887532211 11223211100 0
Q ss_pred CCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCchh-hhhhhcCccceEEcc
Q 003203 117 KGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRYRD-ILVSEMHSQYNYCVS 189 (839)
Q Consensus 117 ~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~~-~~~~~~~~~~~~~l~ 189 (839)
..-..+.++.+.+.+. .+++-++|+|+++.. .....+...+..-..++.+|++|.+.. +..+.......+.+.
T Consensus 84 ~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~ 163 (328)
T PRK05707 84 KTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACP 163 (328)
T ss_pred CCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCC
Confidence 0112233334433332 234445577999865 344555444443345677777777654 343334456789999
Q ss_pred CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHH
Q 003203 190 VLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIV 234 (839)
Q Consensus 190 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 234 (839)
+++.+++.+.+....+.. . ++.+..++..++|.|.....+
T Consensus 164 ~~~~~~~~~~L~~~~~~~-~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 164 LPSNEESLQWLQQALPES-D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CcCHHHHHHHHHHhcccC-C----hHHHHHHHHHcCCCHHHHHHH
Confidence 999999999998765221 1 233567889999999755443
No 160
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.93 E-value=2.4e-05 Score=83.07 Aligned_cols=108 Identities=17% Similarity=0.158 Sum_probs=72.9
Q ss_pred ccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhh
Q 003203 35 KSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLE 114 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 114 (839)
.+.++.+..++.+...+... +.+.++|++|+|||++|+++++.......++.+.|+.+++..+..++...+.-. +..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vg 251 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVG 251 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCC
Confidence 45778889999999998755 577889999999999999999988766678889999999888766665322100 000
Q ss_pred ccCCCchHHHHHHHHHHH--cCCcEEEEEeCCCCc
Q 003203 115 LCKGTESERARTLFDRLW--KENKILVILDDICTS 147 (839)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~--~~~~~LlVlDdv~~~ 147 (839)
.. ..........+... .++++++|+|+++..
T Consensus 252 y~--~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 252 FR--RKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred eE--ecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 00 00011111222222 247899999999754
No 161
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.92 E-value=0.00015 Score=79.19 Aligned_cols=159 Identities=18% Similarity=0.176 Sum_probs=94.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCc
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENK 136 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (839)
..+.|+|+.|+|||.||+.+++....+..-..++|++. .++..++...+... . .....+.+. ..
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~---~~~~~~~~~--~~ 200 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN-----K---MEEFKEKYR--SV 200 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----C---HHHHHHHHH--hC
Confidence 46889999999999999999999875422234566643 23344444444321 1 122333342 23
Q ss_pred EEEEEeCCCCccc---c-ccccccCCC-CCCCceEEEEeCchhh-h-------hhhcCccceEEccCCCHHHHHHHHHHH
Q 003203 137 ILVILDDICTSID---L-VTVGIPFGN-AHRGCKILLASRYRDI-L-------VSEMHSQYNYCVSVLNKEEAWSLFKKM 203 (839)
Q Consensus 137 ~LlVlDdv~~~~~---~-~~l~~~l~~-~~~~s~iivTtr~~~~-~-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 203 (839)
-+||+||++.... + +.+...+.. ...+..+|+|+....- . .+.......+++++.+.++-.+++++.
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 4888999975321 1 112221211 1234567787764321 1 112222357899999999999999999
Q ss_pred hCCCCCCcchHHHHHHHHHHhCCchhHHH
Q 003203 204 VGDYVEDSDLESIAIQVANECGGLPLAIV 232 (839)
Q Consensus 204 ~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 232 (839)
+..... .-.+++...|++.+.|..-.+.
T Consensus 281 ~~~~~~-~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 281 AEEEGL-ELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHcCC-CCCHHHHHHHHHhcCCCHHHHH
Confidence 854222 1225678888898888776443
No 162
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.92 E-value=0.00043 Score=75.78 Aligned_cols=204 Identities=16% Similarity=0.165 Sum_probs=112.6
Q ss_pred Ccccc-chHHHH--HHHHHHhcCC-CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHH
Q 003203 34 YKSFE-SRKSIL--CDILDWLTSP-NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIAD 109 (839)
Q Consensus 34 ~~~fv-gR~~~~--~~l~~~l~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 109 (839)
.+.|+ |-.... ....++...+ ...-+.|+|++|+|||.||+.+++.......-..++|++. .++..++..
T Consensus 104 FdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~ 177 (440)
T PRK14088 104 FENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVD 177 (440)
T ss_pred ccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHH
Confidence 45566 644332 2333333322 2346899999999999999999998865422234667643 344555555
Q ss_pred HhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc---cc-ccccccCCC-CCCCceEEEEeC-chhhh-------
Q 003203 110 QLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI---DL-VTVGIPFGN-AHRGCKILLASR-YRDIL------- 176 (839)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~---~~-~~l~~~l~~-~~~~s~iivTtr-~~~~~------- 176 (839)
.+... . .....+.+. .+.-+|++||++... .. +.+...+.. ...|..||+||. .+.-.
T Consensus 178 ~~~~~----~----~~~f~~~~~-~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL 248 (440)
T PRK14088 178 SMKEG----K----LNEFREKYR-KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRL 248 (440)
T ss_pred HHhcc----c----HHHHHHHHH-hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHH
Confidence 44221 1 112233332 245588999997431 11 122222211 123456888875 33221
Q ss_pred hhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHHHHh------cCC--ChhHHHH
Q 003203 177 VSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVARAL------RNK--PLSEWKG 248 (839)
Q Consensus 177 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L------~~~--~~~~w~~ 248 (839)
.+.......+++++.+.+.-.+++++.+..... .-.+++.+-|++.+.|.--.+.-+-..| .++ +....+.
T Consensus 249 ~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~-~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~ 327 (440)
T PRK14088 249 VSRFQMGLVAKLEPPDEETRKKIARKMLEIEHG-ELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAIL 327 (440)
T ss_pred hhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 112233457889999999999999998843221 1225678888888888654433322221 222 5555566
Q ss_pred HHHHh
Q 003203 249 ALLKL 253 (839)
Q Consensus 249 ~l~~l 253 (839)
++...
T Consensus 328 ~L~~~ 332 (440)
T PRK14088 328 LLKDF 332 (440)
T ss_pred HHHHH
Confidence 66544
No 163
>PRK06620 hypothetical protein; Validated
Probab=97.91 E-value=0.0001 Score=72.11 Aligned_cols=136 Identities=16% Similarity=0.001 Sum_probs=80.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCc
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENK 136 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (839)
+.+.|+|++|+|||+|++.+++... ..++. ..+.. + +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~-------~~~~~--~~~~~---------------------~------~~~--~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN-------AYIIK--DIFFN---------------------E------EIL--EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC-------CEEcc--hhhhc---------------------h------hHH--hcC
Confidence 5689999999999999998766542 12221 00000 0 001 133
Q ss_pred EEEEEeCCCCccccccccccCCC-CCCCceEEEEeCchhhh------hhhcCccceEEccCCCHHHHHHHHHHHhCCCCC
Q 003203 137 ILVILDDICTSIDLVTVGIPFGN-AHRGCKILLASRYRDIL------VSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVE 209 (839)
Q Consensus 137 ~LlVlDdv~~~~~~~~l~~~l~~-~~~~s~iivTtr~~~~~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 209 (839)
-++++||++...+ ..+...+.. ...|..+|+|++..... .+.....-+++++++++++-.+++++.+....
T Consensus 87 d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~- 164 (214)
T PRK06620 87 NAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS- 164 (214)
T ss_pred CEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC-
Confidence 5688899974422 112111111 13566899998865432 22233345899999999999999988874321
Q ss_pred CcchHHHHHHHHHHhCCchhHHH
Q 003203 210 DSDLESIAIQVANECGGLPLAIV 232 (839)
Q Consensus 210 ~~~~~~~~~~I~~~~~G~Plai~ 232 (839)
-.-.+++.+-|++.+.|---.+.
T Consensus 165 l~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 165 VTISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred CCCCHHHHHHHHHHccCCHHHHH
Confidence 11225667788888877654443
No 164
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.90 E-value=3.3e-06 Score=96.37 Aligned_cols=125 Identities=21% Similarity=0.214 Sum_probs=77.0
Q ss_pred cccceEEecCCCC--CCCCCCC--CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEE
Q 003203 384 KNCSAVFLNDIKT--GVLPEGL--EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTL 459 (839)
Q Consensus 384 ~~~~~l~l~~~~~--~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L 459 (839)
.+++++++.+... ...|..+ .+|+|++|.+.+-.....--...+.++++|+.||+|+++++.+ ..++.|+||++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 4577777766432 1122211 5778888887765432222234456777888888888877766 677778888888
Q ss_pred EccCCCcCC---CcccCCCCCCCEEEccCCCCCCCchh-------hcCCCccCeEecCCC
Q 003203 460 CLDQCVVGD---ISIIGNLKKLEILSLVDSDIERLPNE-------IGQLTQLRCLDLSFC 509 (839)
Q Consensus 460 ~l~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~lp~~-------i~~l~~L~~L~l~~~ 509 (839)
.+.+=.++. +..+.+|++|++||+|......-+.- -..|++|+.||.++.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 777765554 35566777788888777644333311 123666777766654
No 165
>CHL00176 ftsH cell division protein; Validated
Probab=97.89 E-value=0.0003 Score=79.85 Aligned_cols=174 Identities=17% Similarity=0.225 Sum_probs=99.6
Q ss_pred CCCccccchHHHHHHHHHHh---cCC---------CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCC
Q 003203 32 QGYKSFESRKSILCDILDWL---TSP---------NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTAN 99 (839)
Q Consensus 32 ~~~~~fvgR~~~~~~l~~~l---~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 99 (839)
....++.|.++..+++.+.+ ... ..+-|.++|++|+|||++|+.++...... |+.++..
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-------~i~is~s-- 250 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-------FFSISGS-- 250 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eeeccHH--
Confidence 34466778776655555443 322 13468999999999999999998865321 2333211
Q ss_pred HHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc----------------ccccccccCC--CCC
Q 003203 100 VKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI----------------DLVTVGIPFG--NAH 161 (839)
Q Consensus 100 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~----------------~~~~l~~~l~--~~~ 161 (839)
++.... .+ ........+++......+.+|++||++... .+..+...+. ...
T Consensus 251 --~f~~~~---~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 --EFVEMF---VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred --HHHHHh---hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 111000 00 111233445555555688999999996431 1112221221 123
Q ss_pred CCceEEEEeCchhhhhhh-c---CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCc
Q 003203 162 RGCKILLASRYRDILVSE-M---HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGL 227 (839)
Q Consensus 162 ~~s~iivTtr~~~~~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~ 227 (839)
.+..||.||...+..... . .....+.++..+.++-.++++.++......+ ......+++.+.|.
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G~ 387 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPGF 387 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCCC
Confidence 456677777665433211 1 2246788899999999999999885422222 22356788888874
No 166
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.89 E-value=0.00075 Score=65.81 Aligned_cols=180 Identities=15% Similarity=0.117 Sum_probs=103.4
Q ss_pred CCCCCccccchHHHHHHHHHHhc-----CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHH
Q 003203 30 SNQGYKSFESRKSILCDILDWLT-----SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQ 104 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~-----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 104 (839)
.|....+|+|.++..++|.=.+. +...--+.++|++|.||||||.-+++...+. + -++-++...-..-+
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~----k~tsGp~leK~gDl 94 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--L----KITSGPALEKPGDL 94 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--e----EecccccccChhhH
Confidence 35667889999988888877665 2334578999999999999999999998754 1 12111111111111
Q ss_pred HHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc-ccccc-cc--------cCCCCCCC-----------
Q 003203 105 DEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI-DLVTV-GI--------PFGNAHRG----------- 163 (839)
Q Consensus 105 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~-~~~~l-~~--------~l~~~~~~----------- 163 (839)
..|+.. + ...=.+++|.++... ..+.+ .. .....+++
T Consensus 95 aaiLt~--------------------L--e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 95 AAILTN--------------------L--EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred HHHHhc--------------------C--CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 222222 2 122334456554321 00000 00 00011222
Q ss_pred ceEEEEeCchhhhh-hhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHHHHh
Q 003203 164 CKILLASRYRDILV-SEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVARAL 238 (839)
Q Consensus 164 s~iivTtr~~~~~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L 238 (839)
+.|=-|||.-.+.. ....-..+.++.-.+.+|-.++..+.++.-...-+ ++.+.+|+++..|-|--..-+-+..
T Consensus 153 TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~-~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID-EEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC-hHHHHHHHHhccCCcHHHHHHHHHH
Confidence 23446888654432 11223457788999999999999998843222211 4458899999999996544444333
No 167
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.86 E-value=0.00017 Score=77.74 Aligned_cols=139 Identities=17% Similarity=0.122 Sum_probs=88.7
Q ss_pred cchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccC
Q 003203 38 ESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCK 117 (839)
Q Consensus 38 vgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 117 (839)
..|..-+.++.+.+..... ++.|.|+-++||||+++.+....... +++++.-+......-..+....+
T Consensus 20 ~~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~~~~~------ 87 (398)
T COG1373 20 IERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDLLRAY------ 87 (398)
T ss_pred hhHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHHHHHH------
Confidence 3445666777777665433 99999999999999996666554322 55554433221111111211111
Q ss_pred CCchHHHHHHHHHHHcCCcEEEEEeCCCCccccccccccCCCCCCCceEEEEeCchhhhh-----hhcCccceEEccCCC
Q 003203 118 GTESERARTLFDRLWKENKILVILDDICTSIDLVTVGIPFGNAHRGCKILLASRYRDILV-----SEMHSQYNYCVSVLN 192 (839)
Q Consensus 118 ~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~~~~-----~~~~~~~~~~l~~L~ 192 (839)
..+...++..|+||.|.....|......+.+.++. +|++|+-+..... ...+....+++.|||
T Consensus 88 -----------~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS 155 (398)
T COG1373 88 -----------IELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLS 155 (398)
T ss_pred -----------HHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence 11111267899999999999998877777666665 8888888776542 122335689999999
Q ss_pred HHHHHHHH
Q 003203 193 KEEAWSLF 200 (839)
Q Consensus 193 ~~ea~~Lf 200 (839)
..|-..+-
T Consensus 156 F~Efl~~~ 163 (398)
T COG1373 156 FREFLKLK 163 (398)
T ss_pred HHHHHhhc
Confidence 88876643
No 168
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.85 E-value=0.00049 Score=71.12 Aligned_cols=174 Identities=14% Similarity=0.036 Sum_probs=102.8
Q ss_pred HHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHHHHhccCC----------------eEEEEEEecCCCHHHHH
Q 003203 42 SILCDILDWLTSPNVN-MIGVYGIGGVGKTALMHEVLFEAKKQNLFD----------------QVIFVLASSTANVKRIQ 104 (839)
Q Consensus 42 ~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~----------------~~~wv~~~~~~~~~~~~ 104 (839)
...+.+.+.+..++++ .+.++|+.|+||+++|..+++.+-..+... ...|+.......
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~----- 85 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRT----- 85 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcc-----
Confidence 3456677777776654 588999999999999999988764332111 122221110000
Q ss_pred HHHHHHhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccccCCCCCCCceEEEEeCch-hhhh
Q 003203 105 DEIADQLCLELCKGTESERARTLFDRLW----KENKILVILDDICTSI--DLVTVGIPFGNAHRGCKILLASRYR-DILV 177 (839)
Q Consensus 105 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTtr~~-~~~~ 177 (839)
+.+....-..+.++.+.+.+. .+++-++|+|+++... .-.++...+..-..++.+|++|.+. .+..
T Consensus 86 -------~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLp 158 (319)
T PRK08769 86 -------GDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPA 158 (319)
T ss_pred -------cccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCch
Confidence 000000112334444444432 2466789999998652 3344444443334566677766654 4444
Q ss_pred hhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHH
Q 003203 178 SEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIV 234 (839)
Q Consensus 178 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 234 (839)
+.......+.+.+.+.+++.+.+... +. + +..+..++..++|.|+....+
T Consensus 159 TIrSRCq~i~~~~~~~~~~~~~L~~~-~~--~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 159 TIRSRCQRLEFKLPPAHEALAWLLAQ-GV--S----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred HHHhhheEeeCCCcCHHHHHHHHHHc-CC--C----hHHHHHHHHHcCCCHHHHHHH
Confidence 33445678999999999999999764 21 1 122567899999999865443
No 169
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.84 E-value=4.6e-05 Score=68.81 Aligned_cols=69 Identities=22% Similarity=0.250 Sum_probs=41.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCC-cE
Q 003203 59 IGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKEN-KI 137 (839)
Q Consensus 59 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~-~~ 137 (839)
|.|+|++|+||||+|+.++++... .++.++.+...+. ........+..+++...... +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-----ccccccccccccc---------------cccccccccccccccccccccce
Confidence 579999999999999999998741 2334433321100 11112223334444443334 89
Q ss_pred EEEEeCCCCc
Q 003203 138 LVILDDICTS 147 (839)
Q Consensus 138 LlVlDdv~~~ 147 (839)
+|++||++..
T Consensus 61 vl~iDe~d~l 70 (132)
T PF00004_consen 61 VLFIDEIDKL 70 (132)
T ss_dssp EEEEETGGGT
T ss_pred eeeeccchhc
Confidence 9999999754
No 170
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.83 E-value=2.4e-05 Score=54.15 Aligned_cols=38 Identities=37% Similarity=0.512 Sum_probs=20.3
Q ss_pred CCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCcc
Q 003203 477 KLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVI 515 (839)
Q Consensus 477 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~ 515 (839)
+|++|++++|+|+.+|..+++|++|++|++++|. ++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCC
Confidence 4555555555555555555556666666665554 4443
No 171
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.81 E-value=7.7e-05 Score=80.92 Aligned_cols=195 Identities=13% Similarity=0.136 Sum_probs=121.6
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHH-H
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNV-NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDE-I 107 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~-i 107 (839)
.|....+++|.+.....|...+..++. ..-...|+-|+||||+|+-++..+...+.- .--.+..+..-..+... .
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~---~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGP---TAEPCGKCISCKEINEGSL 87 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCC---CCCcchhhhhhHhhhcCCc
Confidence 366778899999999999999987764 356788999999999999999887543210 00011111111111110 0
Q ss_pred HHHhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCchh-hhhhhc
Q 003203 108 ADQLCLELCKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRYRD-ILVSEM 180 (839)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~~-~~~~~~ 180 (839)
.+-+..+.......+.++.+.+... .++.=..|+|+|+-. ..+.++...+-.-..+...|++|++.+ +..+..
T Consensus 88 ~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIl 167 (515)
T COG2812 88 IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTIL 167 (515)
T ss_pred ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhh
Confidence 0001111112234455566666554 245568889999754 566766666655556777777666654 444455
Q ss_pred CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCch
Q 003203 181 HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLP 228 (839)
Q Consensus 181 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~P 228 (839)
.....|.++.++.++-...+...+..+...-+ ++....|++..+|-.
T Consensus 168 SRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e-~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 168 SRCQRFDFKRLDLEEIAKHLAAILDKEGINIE-EDALSLIARAAEGSL 214 (515)
T ss_pred hccccccccCCCHHHHHHHHHHHHHhcCCccC-HHHHHHHHHHcCCCh
Confidence 66789999999999999999988855443333 334556777777643
No 172
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.80 E-value=9.6e-06 Score=92.65 Aligned_cols=133 Identities=23% Similarity=0.275 Sum_probs=90.3
Q ss_pred CCCccEEeecCCCCC-CCCChhhhcCCCCccEEEeCCCccc--ccCccccCCCCCcEEEccCCCcCCCcccCCCCCCCEE
Q 003203 405 YPQLDFFCMNSKDPF-FKMPENFFTGMSKLRGLALSEMQLL--SLPPSVHLLSNLQTLCLDQCVVGDISIIGNLKKLEIL 481 (839)
Q Consensus 405 ~~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L 481 (839)
-.+|+.|+++|...+ ...+..+...++.|+.|.+++-.+. ++-....++++|+.||++++++..+..+++|++|+.|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 357888888876543 2445555667888999888886654 3334446788888888888888888888888888888
Q ss_pred EccCCCCCCCc--hhhcCCCccCeEecCCCcCCCcc--Cchh---hcCccccCeEEccCCccc
Q 003203 482 SLVDSDIERLP--NEIGQLTQLRCLDLSFCRNLKVI--PPNV---ISKLTQLEELYMGNTSVK 537 (839)
Q Consensus 482 ~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~--p~~~---l~~l~~L~~L~l~~~~~~ 537 (839)
.+.+-.+..-. ..+.+|++|+.||+|.......- .... -..|++|+.|+.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 88876666432 35678888888888875433221 1100 124677777777766543
No 173
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.78 E-value=2.7e-05 Score=74.65 Aligned_cols=238 Identities=22% Similarity=0.189 Sum_probs=116.5
Q ss_pred CCCccEEEeCCCccc-----ccCccccCCCCCcEEEccCCCcCC------------CcccCCCCCCCEEEccCCCCC-CC
Q 003203 430 MSKLRGLALSEMQLL-----SLPPSVHLLSNLQTLCLDQCVVGD------------ISIIGNLKKLEILSLVDSDIE-RL 491 (839)
Q Consensus 430 l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~------------~~~~~~l~~L~~L~l~~~~l~-~l 491 (839)
+..+..++||+|.|. .+...|.+-.+|+..+++.-.... .+.+-+|++|+..+|++|.+. +.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 556666666666554 234444555566666665532111 133456666666666666444 33
Q ss_pred chh----hcCCCccCeEecCCCcCCCccCchhh-------------cCccccCeEEccCCccccccccccccccccchhh
Q 003203 492 PNE----IGQLTQLRCLDLSFCRNLKVIPPNVI-------------SKLTQLEELYMGNTSVKWEFEGLNIERSNASLQE 554 (839)
Q Consensus 492 p~~----i~~l~~L~~L~l~~~~~l~~~p~~~l-------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 554 (839)
|+. |.+-+.|.||.+++|. ++.+..+-+ ..-+.|+......|.+.. .........
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-------gs~~~~a~~ 180 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-------GSKELSAAL 180 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-------CcHHHHHHH
Confidence 332 4455666666666654 433322111 234556666666665430 001112223
Q ss_pred hccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHH-----HHHHhcccceE
Q 003203 555 LRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDE-----ILMQLKGIEHL 629 (839)
Q Consensus 555 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-----~~~~l~~L~~L 629 (839)
++...+|+.+.+..|++.. .++.. |-. .....+.+|+.|++.++......+ ....++.|+.|
T Consensus 181 l~sh~~lk~vki~qNgIrp--egv~~--L~~---------~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 181 LESHENLKEVKIQQNGIRP--EGVTM--LAF---------LGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred HHhhcCceeEEeeecCcCc--chhHH--HHH---------HHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 4444566666666666542 11100 000 001122345555555544332221 34455667777
Q ss_pred Eecccc----CchhhccccccCCCCCCCeeeeccCCCcceeecCC--Ccccccccccchhhhhcc
Q 003203 630 YLDEVP----GIKNVLYDLEREGFPQLKHLQVQNNPFILCITDST--AWVCFDAFPLLESLVLHN 688 (839)
Q Consensus 630 ~l~~~~----~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~--~~~~~~~~p~L~~L~l~~ 688 (839)
.+.+|- +.......+....+|+|..|....+..-..+.... .....+.+|-|..|.+.+
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng 312 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG 312 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc
Confidence 777764 33334444444556888888877765433222111 111345666666666654
No 174
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.00054 Score=72.10 Aligned_cols=147 Identities=13% Similarity=0.082 Sum_probs=92.5
Q ss_pred cccc-hHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHHHHhc--------------------cCCeEEEEE
Q 003203 36 SFES-RKSILCDILDWLTSPNVN-MIGVYGIGGVGKTALMHEVLFEAKKQN--------------------LFDQVIFVL 93 (839)
Q Consensus 36 ~fvg-R~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~--------------------~f~~~~wv~ 93 (839)
.++| .+..++.+.+.+..++.+ ...++|+.|+||||+|..+++..-... |.| ..++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD-~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPD-VHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCC-EEEec
Confidence 3566 777888888888877654 568999999999999999988864322 112 11221
Q ss_pred EecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCCCCceEE
Q 003203 94 ASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAHRGCKIL 167 (839)
Q Consensus 94 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ii 167 (839)
... .....+.+..+.+.+. .+++-++|+|+++.. ...+.+...+..-..++.+|
T Consensus 85 ~~~--------------------~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~I 144 (329)
T PRK08058 85 PDG--------------------QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAI 144 (329)
T ss_pred ccc--------------------ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEE
Confidence 110 0111233333333332 245667899998765 33455555555445677777
Q ss_pred EEeCchh-hhhhhcCccceEEccCCCHHHHHHHHHHH
Q 003203 168 LASRYRD-ILVSEMHSQYNYCVSVLNKEEAWSLFKKM 203 (839)
Q Consensus 168 vTtr~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 203 (839)
++|.+.. +..........+++.+++.++..+.+.+.
T Consensus 145 l~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 145 LLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 7776544 33323444678999999999998888754
No 175
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.74 E-value=9.4e-05 Score=67.80 Aligned_cols=89 Identities=21% Similarity=0.157 Sum_probs=51.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCc
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENK 136 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (839)
+.+.|+|++|+||||+|+.+++...... ..++++..+........... ...........................+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999998876432 34666665554332222111 11111111122223333444444433344
Q ss_pred EEEEEeCCCCcc
Q 003203 137 ILVILDDICTSI 148 (839)
Q Consensus 137 ~LlVlDdv~~~~ 148 (839)
.+|++|+++...
T Consensus 80 ~viiiDei~~~~ 91 (148)
T smart00382 80 DVLILDEITSLL 91 (148)
T ss_pred CEEEEECCcccC
Confidence 999999998653
No 176
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.00084 Score=69.51 Aligned_cols=175 Identities=10% Similarity=0.027 Sum_probs=103.3
Q ss_pred HHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCe----EE----EEEEecCCCHHHHHHHHHHHhhh
Q 003203 43 ILCDILDWLTSPNV-NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQ----VI----FVLASSTANVKRIQDEIADQLCL 113 (839)
Q Consensus 43 ~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~----~~----wv~~~~~~~~~~~~~~i~~~l~~ 113 (839)
.-+.+.+.+..++. ....+.|+.|+||+++|..++..+-..+.... .+ ++..+..+|+..+ ..
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p 81 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL--------EP 81 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE--------cc
Confidence 34567777776664 46779999999999999999988654321110 00 0000111111100 00
Q ss_pred hccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCch-hhhhhhcCccceE
Q 003203 114 ELCKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRYR-DILVSEMHSQYNY 186 (839)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~-~~~~~~~~~~~~~ 186 (839)
.....-..+.++.+.+.+. .+++-++|+|+++.. ....++...+-.-.+++.+|++|.+. .+..+.......+
T Consensus 82 ~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~ 161 (325)
T PRK06871 82 IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTW 161 (325)
T ss_pred ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEE
Confidence 0001122344455544443 256678889999865 34455555554445666777777665 4444334456789
Q ss_pred EccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHH
Q 003203 187 CVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAI 231 (839)
Q Consensus 187 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 231 (839)
.+.++++++..+.+....+.. ...+...++.++|.|...
T Consensus 162 ~~~~~~~~~~~~~L~~~~~~~------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSSAE------ISEILTALRINYGRPLLA 200 (325)
T ss_pred eCCCCCHHHHHHHHHHHhccC------hHHHHHHHHHcCCCHHHH
Confidence 999999999999998875321 112556788999999633
No 177
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.70 E-value=0.00023 Score=66.28 Aligned_cols=136 Identities=13% Similarity=0.099 Sum_probs=79.3
Q ss_pred chHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHHHHhccC------------------CeEEEEEEecCCC
Q 003203 39 SRKSILCDILDWLTSPNVN-MIGVYGIGGVGKTALMHEVLFEAKKQNLF------------------DQVIFVLASSTAN 99 (839)
Q Consensus 39 gR~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~f------------------~~~~wv~~~~~~~ 99 (839)
|.++..+.|.+.+..++.+ .+.++|+.|+||+++|..+++.+-..... ..+.|+.-....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~- 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK- 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS-
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc-
Confidence 6677888888888877765 67999999999999999999886543322 123333222110
Q ss_pred HHHHHHHHHHHhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCch
Q 003203 100 VKRIQDEIADQLCLELCKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRYR 173 (839)
Q Consensus 100 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~ 173 (839)
..-..+.+..+...+. .+++-++|+||++.. +...+++..+..-..++++|++|++.
T Consensus 80 -----------------~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 80 -----------------KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp -----------------SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred -----------------chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 0011233333333332 246778999999875 44555555555555788888888876
Q ss_pred h-hhhhhcCccceEEccCCC
Q 003203 174 D-ILVSEMHSQYNYCVSVLN 192 (839)
Q Consensus 174 ~-~~~~~~~~~~~~~l~~L~ 192 (839)
. +...-......+.+.+++
T Consensus 143 ~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 143 SKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GGS-HHHHTTSEEEEE----
T ss_pred HHChHHHHhhceEEecCCCC
Confidence 6 333334445677777654
No 178
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.69 E-value=0.00013 Score=76.71 Aligned_cols=130 Identities=22% Similarity=0.377 Sum_probs=77.6
Q ss_pred CCCCccEEEeCCCcccccCccccCCCCCcEEEccCC-CcCCCc-ccCCCCCCCEEEccCC-CCCCCchhhcCCCccCeEe
Q 003203 429 GMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQC-VVGDIS-IIGNLKKLEILSLVDS-DIERLPNEIGQLTQLRCLD 505 (839)
Q Consensus 429 ~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~-~~~~~~-~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~ 505 (839)
.+.+++.|++++|.+..+|. -..+|+.|.+++| .+..++ .+ ..+|++|++++| .+..+|.+ |++|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEE
Confidence 46889999999998888882 1336999999887 344433 23 357888888888 77777764 44555
Q ss_pred cCC--CcCCCccCchhhcCccccCeEEccCCccccccccccccccccchhhhccC-CCCCEEEEEeccccCCCccccccc
Q 003203 506 LSF--CRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHL-SQLTTLEIQIQDAMILPKGLFSKK 582 (839)
Q Consensus 506 l~~--~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~ 582 (839)
+.. |..++.+|. +|+.|.+.++..... ..+. ..+ ++|+.|.+++|.....|.. ...+
T Consensus 119 L~~n~~~~L~~LPs-------sLk~L~I~~~n~~~~----------~~lp--~~LPsSLk~L~Is~c~~i~LP~~-LP~S 178 (426)
T PRK15386 119 IKGSATDSIKNVPN-------GLTSLSINSYNPENQ----------ARID--NLISPSLKTLSLTGCSNIILPEK-LPES 178 (426)
T ss_pred eCCCCCcccccCcc-------hHhheeccccccccc----------cccc--cccCCcccEEEecCCCcccCccc-cccc
Confidence 543 233555554 355666543221000 0000 012 5688888887776655543 2255
Q ss_pred cceEEEE
Q 003203 583 LERYKIY 589 (839)
Q Consensus 583 L~~l~l~ 589 (839)
|+.|.+.
T Consensus 179 Lk~L~ls 185 (426)
T PRK15386 179 LQSITLH 185 (426)
T ss_pred CcEEEec
Confidence 6655554
No 179
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.69 E-value=0.00077 Score=74.88 Aligned_cols=158 Identities=16% Similarity=0.137 Sum_probs=93.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCc
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENK 136 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (839)
..+.|+|..|+|||.|++.+++.......-..++|++. .++..++...+... ....+.+++. +-
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~--------~~~~f~~~y~--~~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG--------KGDSFRRRYR--EM 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc--------cHHHHHHHhh--cC
Confidence 35899999999999999999998764322234566643 33444444333211 1122333332 33
Q ss_pred EEEEEeCCCCcc---cc-ccccccCCC-CCCCceEEEEeCchhh--------hhhhcCccceEEccCCCHHHHHHHHHHH
Q 003203 137 ILVILDDICTSI---DL-VTVGIPFGN-AHRGCKILLASRYRDI--------LVSEMHSQYNYCVSVLNKEEAWSLFKKM 203 (839)
Q Consensus 137 ~LlVlDdv~~~~---~~-~~l~~~l~~-~~~~s~iivTtr~~~~--------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 203 (839)
=+|||||++... .+ +.+...+.. ...|..|||||+...- +.+.....-++++++.+.+.-.++++++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 578899997541 11 112222221 1235568888876321 1223444568899999999999999999
Q ss_pred hCCCCCCcchHHHHHHHHHHhCCchhHH
Q 003203 204 VGDYVEDSDLESIAIQVANECGGLPLAI 231 (839)
Q Consensus 204 ~~~~~~~~~~~~~~~~I~~~~~G~Plai 231 (839)
+..... .-.+++.+-|++.+.+..-.+
T Consensus 459 a~~r~l-~l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 459 AVQEQL-NAPPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHhcCC-CCCHHHHHHHHHhccCCHHHH
Confidence 843221 222566777888777664433
No 180
>PRK10536 hypothetical protein; Provisional
Probab=97.68 E-value=0.00038 Score=68.33 Aligned_cols=58 Identities=22% Similarity=0.215 Sum_probs=43.5
Q ss_pred CCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEE
Q 003203 32 QGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIF 91 (839)
Q Consensus 32 ~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w 91 (839)
.+...+.+|......+..++.+. .+|.+.|++|+|||+||.++..+.-..+.|+.++.
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 34456778889999999998765 49999999999999999998886332233544433
No 181
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.67 E-value=0.00041 Score=76.13 Aligned_cols=177 Identities=12% Similarity=0.094 Sum_probs=95.7
Q ss_pred CCccccchHHHHHHHHHHhc-------C---CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHH
Q 003203 33 GYKSFESRKSILCDILDWLT-------S---PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKR 102 (839)
Q Consensus 33 ~~~~fvgR~~~~~~l~~~l~-------~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 102 (839)
...++.|.+...+.+.+... . ...+-|.++|++|+|||.+|+.+++..... | +-+..+.
T Consensus 226 ~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~~------ 294 (489)
T CHL00195 226 KISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVGK------ 294 (489)
T ss_pred CHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhHH------
Confidence 34567787665555544221 1 224568899999999999999999876522 2 2222111
Q ss_pred HHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc--------------cccccccCCCCCCCceEEE
Q 003203 103 IQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID--------------LVTVGIPFGNAHRGCKILL 168 (839)
Q Consensus 103 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~--------------~~~l~~~l~~~~~~s~iiv 168 (839)
+... .. ......+..+++......+.+|++|+++..-. ...+...+.....+..||.
T Consensus 295 ----l~~~----~v-Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 295 ----LFGG----IV-GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred ----hccc----cc-ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 1110 00 01122333444444445889999999974310 0011111112233445666
Q ss_pred EeCchhhhhhh----cCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchh
Q 003203 169 ASRYRDILVSE----MHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPL 229 (839)
Q Consensus 169 Ttr~~~~~~~~----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl 229 (839)
||......... ..-+..+.++.-+.++-.++|+.+............-...+++.+.|.--
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSG 430 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSG 430 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCH
Confidence 77665432111 12356788888899999999998884422111001114567777777643
No 182
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.66 E-value=0.00036 Score=66.72 Aligned_cols=172 Identities=18% Similarity=0.283 Sum_probs=105.8
Q ss_pred ccccchHHHHH---HHHHHhcCC------CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHH
Q 003203 35 KSFESRKSILC---DILDWLTSP------NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQD 105 (839)
Q Consensus 35 ~~fvgR~~~~~---~l~~~l~~~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 105 (839)
++++|.++... -|++.|.++ ..+-|..+|++|.|||-+|+.+++..++- ++.+.. .++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp-------~l~vka----t~l-- 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP-------LLLVKA----TEL-- 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc-------eEEech----HHH--
Confidence 56888875543 355566543 25789999999999999999999887643 222221 111
Q ss_pred HHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc--------------cccccccccCC--CCCCCceEEEE
Q 003203 106 EIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS--------------IDLVTVGIPFG--NAHRGCKILLA 169 (839)
Q Consensus 106 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~--------------~~~~~l~~~l~--~~~~~s~iivT 169 (839)
|-+.. .+...+++++.++..+--++.+++|.++.. +...++...+. ..+.|...|-+
T Consensus 188 -iGehV------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 188 -IGEHV------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred -HHHHh------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 11222 233456667777776678999999988642 12333333332 24567777777
Q ss_pred eCchhhhhhhcCc--cceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCch
Q 003203 170 SRYRDILVSEMHS--QYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLP 228 (839)
Q Consensus 170 tr~~~~~~~~~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~P 228 (839)
|.+.+++...... ..-++..--+++|-.+++..++.....+-+. -.+.++.+.+|+-
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~--~~~~~~~~t~g~S 319 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDA--DLRYLAAKTKGMS 319 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcccc--CHHHHHHHhCCCC
Confidence 7777665322222 3466777778899999999988443322211 1456777777653
No 183
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.64 E-value=0.00086 Score=73.23 Aligned_cols=153 Identities=16% Similarity=0.146 Sum_probs=88.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCc
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENK 136 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (839)
.-+.|+|+.|+|||+||+.+++..... ...+++++ ...+...+...+... . .....+.+ ...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~------~~~f~~~~~~~l~~~-----~---~~~f~~~~--~~~ 203 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVR------SELFTEHLVSAIRSG-----E---MQRFRQFY--RNV 203 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEee------HHHHHHHHHHHHhcc-----h---HHHHHHHc--ccC
Confidence 468899999999999999999998643 23455654 233444444444211 1 11222222 244
Q ss_pred EEEEEeCCCCccc----cccccccCCC-CCCCceEEEEeCchh-hh-------hhhcCccceEEccCCCHHHHHHHHHHH
Q 003203 137 ILVILDDICTSID----LVTVGIPFGN-AHRGCKILLASRYRD-IL-------VSEMHSQYNYCVSVLNKEEAWSLFKKM 203 (839)
Q Consensus 137 ~LlVlDdv~~~~~----~~~l~~~l~~-~~~~s~iivTtr~~~-~~-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 203 (839)
-++++||++.... .+.+...+.. ...|..||+||.... .. .+.......+.+.+++.++-.++++++
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 5888899865421 1112111110 113557888886532 11 112333468899999999999999998
Q ss_pred hCCCCCCcchHHHHHHHHHHhCCch
Q 003203 204 VGDYVEDSDLESIAIQVANECGGLP 228 (839)
Q Consensus 204 ~~~~~~~~~~~~~~~~I~~~~~G~P 228 (839)
+.... ..-.+++..-|++.+.|.-
T Consensus 284 ~~~~~-~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 284 AEALS-IRIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHcC-CCCCHHHHHHHHHhcCCCH
Confidence 84322 1122455666777776553
No 184
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00062 Score=73.11 Aligned_cols=173 Identities=18% Similarity=0.252 Sum_probs=100.5
Q ss_pred CccccchHHHHHHHHHHhc---C---------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHH
Q 003203 34 YKSFESRKSILCDILDWLT---S---------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVK 101 (839)
Q Consensus 34 ~~~fvgR~~~~~~l~~~l~---~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 101 (839)
...+=|.+..+.++.+.+. . ...+=|.++|++|.|||.||++++.+..+- ++.++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch----
Confidence 4567788888877777764 1 124678899999999999999999988754 3444332
Q ss_pred HHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc----------------ccccccccCCC---CCC
Q 003203 102 RIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI----------------DLVTVGIPFGN---AHR 162 (839)
Q Consensus 102 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~---~~~ 162 (839)
+|.+.+ .....+.++++++.-....++++++|+++... ++-..+..+.. .+.
T Consensus 258 ----eivSGv-----SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~ 328 (802)
T KOG0733|consen 258 ----EIVSGV-----SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGD 328 (802)
T ss_pred ----hhhccc-----CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCC
Confidence 222222 12234556677777767799999999997431 11111222221 133
Q ss_pred CceEEEEeCchhhhhhhc----CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCch
Q 003203 163 GCKILLASRYRDILVSEM----HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLP 228 (839)
Q Consensus 163 ~s~iivTtr~~~~~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~P 228 (839)
+..||-+|..++.+.... ...+-+.+.--++.+=.++++..+..-..+..+. .++|++..-|.-
T Consensus 329 ~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d--~~qlA~lTPGfV 396 (802)
T KOG0733|consen 329 PVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFD--FKQLAKLTPGFV 396 (802)
T ss_pred CeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcC--HHHHHhcCCCcc
Confidence 444444454444331111 2245677777676666667766663222222222 557777776654
No 185
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=0.0032 Score=65.07 Aligned_cols=181 Identities=12% Similarity=0.090 Sum_probs=107.3
Q ss_pred HHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHHHHhcc------------------CCeEEEEEEecCCCHHHH
Q 003203 43 ILCDILDWLTSPNV-NMIGVYGIGGVGKTALMHEVLFEAKKQNL------------------FDQVIFVLASSTANVKRI 103 (839)
Q Consensus 43 ~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~------------------f~~~~wv~~~~~~~~~~~ 103 (839)
.-+++.+.+..++. ..+.+.|+.|+||+++|..+++..-..+. .....|+.-...
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~------ 84 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE------ 84 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC------
Confidence 45566777766654 47889999999999999999887643221 111222211100
Q ss_pred HHHHHHHhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCch-hhh
Q 003203 104 QDEIADQLCLELCKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRYR-DIL 176 (839)
Q Consensus 104 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~-~~~ 176 (839)
...-..+.++.+.+.+. .+++-++|+|+++.. ....++...+..-.+++.+|++|.+. .+.
T Consensus 85 ------------~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lL 152 (319)
T PRK06090 85 ------------GKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLL 152 (319)
T ss_pred ------------CCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhCh
Confidence 00112233333333332 245668889999865 34455544444444566666666654 455
Q ss_pred hhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHHHHhcCCChhHHHHHHHHh
Q 003203 177 VSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVARALRNKPLSEWKGALLKL 253 (839)
Q Consensus 177 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~~~~~w~~~l~~l 253 (839)
.+.......+.+.+++.+++.+.+.....+ ....+++.++|.|+....+ +.......++..+..+
T Consensus 153 pTI~SRCq~~~~~~~~~~~~~~~L~~~~~~---------~~~~~l~l~~G~p~~A~~~---~~~~~~~~~~~~~~~l 217 (319)
T PRK06090 153 PTIVSRCQQWVVTPPSTAQAMQWLKGQGIT---------VPAYALKLNMGSPLKTLAM---MKEGGLEKYHKLERQL 217 (319)
T ss_pred HHHHhcceeEeCCCCCHHHHHHHHHHcCCc---------hHHHHHHHcCCCHHHHHHH---hCCCcHHHHHHHHHHH
Confidence 544555778999999999999998764211 1346789999999876544 3333334444444433
No 186
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.63 E-value=2e-06 Score=93.15 Aligned_cols=125 Identities=22% Similarity=0.174 Sum_probs=86.7
Q ss_pred cccccceEEecCCCCCCCCCCC-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCc-cccCCCCCcEE
Q 003203 382 ILKNCSAVFLNDIKTGVLPEGL-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPP-SVHLLSNLQTL 459 (839)
Q Consensus 382 ~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L 459 (839)
.|..+..++.++|....+...+ -++.|+.|+++.|+. .+.. .+..+.+|++|||+.|++..+|. +...+. |+.|
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~-~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKF-TKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLL 237 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhh-hhhH--HHHhcccccccccccchhccccccchhhhh-heee
Confidence 3556777777777776666555 356788888888774 3332 35678888888888888877775 223343 8888
Q ss_pred EccCCCcCCCcccCCCCCCCEEEccCCCCCCCc--hhhcCCCccCeEecCCCc
Q 003203 460 CLDQCVVGDISIIGNLKKLEILSLVDSDIERLP--NEIGQLTQLRCLDLSFCR 510 (839)
Q Consensus 460 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~ 510 (839)
++++|.++.+..+.+|.+|+.||+++|-+.... .-+..|..|+.|.+.||.
T Consensus 238 ~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 238 NLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 888888888878888888888888887555321 225567777888888776
No 187
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00043 Score=76.16 Aligned_cols=158 Identities=15% Similarity=0.162 Sum_probs=95.3
Q ss_pred ccccchHHHHHHHHHHhc------CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHH
Q 003203 35 KSFESRKSILCDILDWLT------SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIA 108 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 108 (839)
.+-+|-++..++|++.|. +-+-++++++||+|+|||+|++-++.....+ | +-+.++...|..++...=-
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--E---EEEecCccccHHHhccccc
Confidence 356788999999999986 2334799999999999999999999888643 3 3455566666555532211
Q ss_pred HHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc------ccccccccCCCCC-------------CCceEEE-
Q 003203 109 DQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI------DLVTVGIPFGNAH-------------RGCKILL- 168 (839)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~------~~~~l~~~l~~~~-------------~~s~iiv- 168 (839)
..+ ......+.+-.+.. +.+.-+++||.++... .-.++...+.+.. .=|.|++
T Consensus 398 TYI------GamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFi 470 (782)
T COG0466 398 TYI------GAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFI 470 (782)
T ss_pred ccc------ccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEE
Confidence 111 11222222222222 2477899999997541 1112222222110 1133443
Q ss_pred -EeCchh-hhhhhcCccceEEccCCCHHHHHHHHHHHh
Q 003203 169 -ASRYRD-ILVSEMHSQYNYCVSVLNKEEAWSLFKKMV 204 (839)
Q Consensus 169 -Ttr~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 204 (839)
|+.+-+ +.....+.-.++++.+.+++|-.++-+++.
T Consensus 471 aTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 471 ATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 433333 333234556799999999999999888887
No 188
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.62 E-value=0.00017 Score=75.77 Aligned_cols=131 Identities=19% Similarity=0.342 Sum_probs=83.5
Q ss_pred cccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCC-cccccCccccCCCCCcEEEcc
Q 003203 384 KNCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEM-QLLSLPPSVHLLSNLQTLCLD 462 (839)
Q Consensus 384 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~~~~l~~L~~L~l~ 462 (839)
.++++|+++.|.+..+|.. -.+|++|.+.+|.....+|..+ ..+|++|++++| .+..+|+. |+.|+++
T Consensus 52 ~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~ 120 (426)
T PRK15386 52 RASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES------VRSLEIK 120 (426)
T ss_pred cCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc------cceEEeC
Confidence 4578899999988888832 2369999999988777777644 358999999998 66677754 6667776
Q ss_pred CCCcCCCcccCCC-CCCCEEEccCCC-C--CCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCC
Q 003203 463 QCVVGDISIIGNL-KKLEILSLVDSD-I--ERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNT 534 (839)
Q Consensus 463 ~~~~~~~~~~~~l-~~L~~L~l~~~~-l--~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~ 534 (839)
++....+ ..+ .+|+.|.+.+++ . ..+|.. --++|++|++++|..+ .+|.. +. .+|+.|.++.+
T Consensus 121 ~n~~~~L---~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~-LP--~SLk~L~ls~n 187 (426)
T PRK15386 121 GSATDSI---KNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEK-LP--ESLQSITLHIE 187 (426)
T ss_pred CCCCccc---ccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccc-cc--ccCcEEEeccc
Confidence 6543332 122 246666664432 1 112211 1156888888887743 34433 33 47777777654
No 189
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.61 E-value=0.0013 Score=69.31 Aligned_cols=132 Identities=18% Similarity=0.202 Sum_probs=80.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCC
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKEN 135 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 135 (839)
...+.|+|..|.|||-|++++.+.......-..+++++ .+....+.+..+.. .......+.. .
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~------se~f~~~~v~a~~~--------~~~~~Fk~~y---~ 175 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT------SEDFTNDFVKALRD--------NEMEKFKEKY---S 175 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc------HHHHHHHHHHHHHh--------hhHHHHHHhh---c
Confidence 57899999999999999999999987653333455542 33344444443322 1112222222 2
Q ss_pred cEEEEEeCCCCccc---c-ccccccCCC-CCCCceEEEEeCchhhh--------hhhcCccceEEccCCCHHHHHHHHHH
Q 003203 136 KILVILDDICTSID---L-VTVGIPFGN-AHRGCKILLASRYRDIL--------VSEMHSQYNYCVSVLNKEEAWSLFKK 202 (839)
Q Consensus 136 ~~LlVlDdv~~~~~---~-~~l~~~l~~-~~~~s~iivTtr~~~~~--------~~~~~~~~~~~l~~L~~~ea~~Lf~~ 202 (839)
-=++++||++-... + +.+...|.. ...|-.||+|++...-. .+.....-++++.+.+.+....++.+
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHH
Confidence 23788999975321 1 222222221 12344888888654321 22334457899999999999999999
Q ss_pred Hh
Q 003203 203 MV 204 (839)
Q Consensus 203 ~~ 204 (839)
++
T Consensus 256 ka 257 (408)
T COG0593 256 KA 257 (408)
T ss_pred HH
Confidence 87
No 190
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.60 E-value=0.00082 Score=69.89 Aligned_cols=103 Identities=12% Similarity=0.188 Sum_probs=68.4
Q ss_pred HHHHHHHHhcC-CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCe-EEEEEEecC-CCHHHHHHHHHHHhhhhccCCC
Q 003203 43 ILCDILDWLTS-PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQ-VIFVLASST-ANVKRIQDEIADQLCLELCKGT 119 (839)
Q Consensus 43 ~~~~l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~ 119 (839)
...++++.+.. .+-+.+.|+|++|+|||||++.+++..... +-+. ++|+.+.+. .++.++.+.+...+.....+..
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 34457777763 333567899999999999999999988654 2344 467666654 5688888888877665432222
Q ss_pred chH------HHHHHHHHHH-cCCcEEEEEeCCCC
Q 003203 120 ESE------RARTLFDRLW-KENKILVILDDICT 146 (839)
Q Consensus 120 ~~~------~~~~~~~~l~-~~~~~LlVlDdv~~ 146 (839)
... .+..+.+++. ++++++||+|++..
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 211 2223333332 58999999999854
No 191
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.60 E-value=0.00082 Score=79.28 Aligned_cols=174 Identities=16% Similarity=0.206 Sum_probs=100.9
Q ss_pred CCccccchHHHHHHHHHHhc-------------CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCC
Q 003203 33 GYKSFESRKSILCDILDWLT-------------SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTAN 99 (839)
Q Consensus 33 ~~~~fvgR~~~~~~l~~~l~-------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 99 (839)
....+.|.+...++|.+.+. -...+-+.++|++|+|||++|+.+++..... ++.++..
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~-------fi~v~~~-- 521 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN-------FIAVRGP-- 521 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC-------EEEEehH--
Confidence 34567788877777766653 1123468899999999999999999876521 2223221
Q ss_pred HHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc--------------ccccccccCCC--CCCC
Q 003203 100 VKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI--------------DLVTVGIPFGN--AHRG 163 (839)
Q Consensus 100 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~--------------~~~~l~~~l~~--~~~~ 163 (839)
++.... .......+..+++......+.+|++|+++... ....+...+.. ...+
T Consensus 522 ------~l~~~~-----vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 522 ------EILSKW-----VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred ------HHhhcc-----cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 111111 11112334555555555678999999986421 01112222221 2234
Q ss_pred ceEEEEeCchhhhhhh-c---CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCch
Q 003203 164 CKILLASRYRDILVSE-M---HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLP 228 (839)
Q Consensus 164 s~iivTtr~~~~~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~P 228 (839)
..||.||...+..... . .-...+.++..+.++-.++|+.+........+.. ...+++.+.|.-
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~--l~~la~~t~g~s 657 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD--LEELAEMTEGYT 657 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC--HHHHHHHcCCCC
Confidence 5566677665543211 2 2356788999999999999987774432222211 456778888764
No 192
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.56 E-value=0.0017 Score=65.98 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHH
Q 003203 42 SILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQ 104 (839)
Q Consensus 42 ~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 104 (839)
+..+++..++..+ +-|.|.|++|+|||++|+.+++... ...+.++.....+..+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHh
Confidence 4456666666554 4567999999999999999987442 124455555554444443
No 193
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.56 E-value=0.00012 Score=67.45 Aligned_cols=100 Identities=26% Similarity=0.407 Sum_probs=58.0
Q ss_pred CCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccC-CCCCcEEEccCCCcCC---CcccCCCCCCCEE
Q 003203 406 PQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHL-LSNLQTLCLDQCVVGD---ISIIGNLKKLEIL 481 (839)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~-l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L 481 (839)
.+...+++++|.. ..++. |..++.|.+|.+++|+|+.+-+.+.. +++|.+|.+.+|.+.. +..+..++.|++|
T Consensus 42 d~~d~iDLtdNdl-~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDL-RKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccch-hhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 3455666666653 22322 45677777777777777766555543 4567777777775554 3445566666666
Q ss_pred EccCCCCCCCch----hhcCCCccCeEecCC
Q 003203 482 SLVDSDIERLPN----EIGQLTQLRCLDLSF 508 (839)
Q Consensus 482 ~l~~~~l~~lp~----~i~~l~~L~~L~l~~ 508 (839)
.+-+|.++.-+. .+..+++|+.||..+
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 666665554332 244555555555544
No 194
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.54 E-value=0.00072 Score=79.76 Aligned_cols=177 Identities=20% Similarity=0.200 Sum_probs=98.0
Q ss_pred CCCccccchHHHHHHHHHHhcC-------------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC
Q 003203 32 QGYKSFESRKSILCDILDWLTS-------------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA 98 (839)
Q Consensus 32 ~~~~~fvgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 98 (839)
...+++.|.++.++++.+++.- ...+.+.|+|++|+|||++|+.+++..... .+.++...
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~-----~i~i~~~~-- 247 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY-----FISINGPE-- 247 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----EEEEecHH--
Confidence 3456688999999998887641 123578899999999999999998876421 12222111
Q ss_pred CHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc-------------ccccccccCCCC-CCCc
Q 003203 99 NVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI-------------DLVTVGIPFGNA-HRGC 164 (839)
Q Consensus 99 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~-------------~~~~l~~~l~~~-~~~s 164 (839)
+ .... ..........+++......+.+|++|+++... ....+...+... ..+.
T Consensus 248 ----i----~~~~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 248 ----I----MSKY-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred ----H----hccc-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 1 1100 00112233445555445577899999986431 011122222111 2233
Q ss_pred eEEE-EeCchhhhhhhc----CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhH
Q 003203 165 KILL-ASRYRDILVSEM----HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLA 230 (839)
Q Consensus 165 ~iiv-Ttr~~~~~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 230 (839)
.+++ ||.......... .-...+.+...+.++-.++++.+........+ .....+++.+.|.--+
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d--~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED--VDLDKLAEVTHGFVGA 383 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc--cCHHHHHHhCCCCCHH
Confidence 3444 454433211011 12356778888999989999876643222111 1256788888887543
No 195
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0019 Score=70.53 Aligned_cols=183 Identities=14% Similarity=0.195 Sum_probs=102.4
Q ss_pred CccccCCCCCccccchHHHHHHHHHHhc-------------CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEE
Q 003203 25 DMWLRSNQGYKSFESRKSILCDILDWLT-------------SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIF 91 (839)
Q Consensus 25 ~~~~~~~~~~~~fvgR~~~~~~l~~~l~-------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w 91 (839)
.++..+...-.++=|-|+...+|.+.+. -...+-|.++|++|.|||++|+.+++..... |
T Consensus 424 ~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n--F----- 496 (693)
T KOG0730|consen 424 ILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN--F----- 496 (693)
T ss_pred eeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC--e-----
Confidence 3445555555666677766666665554 1345678899999999999999999887643 3
Q ss_pred EEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc-------------cccccccCC
Q 003203 92 VLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID-------------LVTVGIPFG 158 (839)
Q Consensus 92 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~-------------~~~l~~~l~ 158 (839)
+.+... ++.+.. . ...+..+..++++-.+-.+.+|++|.++.... +.++...+.
T Consensus 497 lsvkgp--------EL~sk~----v-GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmD 563 (693)
T KOG0730|consen 497 LSVKGP--------ELFSKY----V-GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMD 563 (693)
T ss_pred eeccCH--------HHHHHh----c-CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcc
Confidence 333321 111111 1 11223444555555555678888888864311 112222222
Q ss_pred CCC--CCceEEEEeCchhhh-hhhcC---ccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchh
Q 003203 159 NAH--RGCKILLASRYRDIL-VSEMH---SQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPL 229 (839)
Q Consensus 159 ~~~--~~s~iivTtr~~~~~-~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl 229 (839)
... .+.-||-.|..++.. ...+. .+..+.++.=+.+.-.++|+.++......++.. .++|+++..|.-=
T Consensus 564 G~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vd--l~~La~~T~g~SG 638 (693)
T KOG0730|consen 564 GLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVD--LEELAQATEGYSG 638 (693)
T ss_pred cccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCcccc--HHHHHHHhccCCh
Confidence 111 233333334333332 22233 356777877778888899999996544443311 4566776666543
No 196
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.003 Score=66.21 Aligned_cols=175 Identities=12% Similarity=0.059 Sum_probs=102.4
Q ss_pred HHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCe----E----EEEEEecCCCHHHHHHHHHHHhhh
Q 003203 43 ILCDILDWLTSPNV-NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQ----V----IFVLASSTANVKRIQDEIADQLCL 113 (839)
Q Consensus 43 ~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~----~----~wv~~~~~~~~~~~~~~i~~~l~~ 113 (839)
.-+++.+.+..+++ ..+.+.|+.|+||+++|..++..+-..+.-+. . -++..+..+|+..+. .
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~--------p 81 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT--------P 81 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe--------c
Confidence 45667777776664 46779999999999999999888643211100 0 000001111110000 0
Q ss_pred hc-cCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCchh-hhhhhcCccce
Q 003203 114 EL-CKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRYRD-ILVSEMHSQYN 185 (839)
Q Consensus 114 ~~-~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~~-~~~~~~~~~~~ 185 (839)
.. ...-..+.++.+.+.+. .+++-++|+|+++.. ....++...+..-..++.+|++|.+.+ +..+.......
T Consensus 82 ~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 82 EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRL 161 (334)
T ss_pred ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccc
Confidence 00 00122344445554443 357778999999865 344445444444445666666666644 55434445678
Q ss_pred EEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHH
Q 003203 186 YCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAI 231 (839)
Q Consensus 186 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 231 (839)
+.+.+++.+++.+.+....+. + .+.+..+++.++|.|...
T Consensus 162 ~~~~~~~~~~~~~~L~~~~~~---~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREVTM---S---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred ccCCCCCHHHHHHHHHHccCC---C---HHHHHHHHHHcCCCHHHH
Confidence 899999999999988765421 1 223668899999999643
No 197
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.49 E-value=0.0062 Score=64.06 Aligned_cols=203 Identities=14% Similarity=0.175 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHH-HHHHHHHHHhccCCeEEEEEEecC---CCHHHHHHHHHHHhhhh-
Q 003203 40 RKSILCDILDWLTSPNVNMIGVYGIGGVGKTALM-HEVLFEAKKQNLFDQVIFVLASST---ANVKRIQDEIADQLCLE- 114 (839)
Q Consensus 40 R~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa-~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~- 114 (839)
|.+.+++|..||....-..|+|.||-|+||+.|+ .++.++.+ .+..+++.+- .+-..+++.++.++|.-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 6678899999999877789999999999999999 77765543 2555554432 23344445555544321
Q ss_pred -----------------------cc-CCCchHHHHHHHHH---------------------------HH--cCCcEEEEE
Q 003203 115 -----------------------LC-KGTESERARTLFDR---------------------------LW--KENKILVIL 141 (839)
Q Consensus 115 -----------------------~~-~~~~~~~~~~~~~~---------------------------l~--~~~~~LlVl 141 (839)
.. .++...++..++.. +. ...+-+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 00 11222222222111 00 123678999
Q ss_pred eCCCCcc-----------ccccccccCCCCCCCceEEEEeCchhhhh---hhc--CccceEEccCCCHHHHHHHHHHHhC
Q 003203 142 DDICTSI-----------DLVTVGIPFGNAHRGCKILLASRYRDILV---SEM--HSQYNYCVSVLNKEEAWSLFKKMVG 205 (839)
Q Consensus 142 Ddv~~~~-----------~~~~l~~~l~~~~~~s~iivTtr~~~~~~---~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~ 205 (839)
|+..... +|.+ .+ ...+-.+||++|.+..... ... ...+.+.|...+.+.|.++...+..
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa---~L-v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAA---SL-VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred cchhccCcccchHHHHHHHHHH---HH-HhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 9985431 2322 11 1234567898888765432 112 2346788999999999999999984
Q ss_pred CCCCC-------------------cchHHHHHHHHHHhCCchhHHHHHHHHhcCC-C-hhHHHHHHHH
Q 003203 206 DYVED-------------------SDLESIAIQVANECGGLPLAIVIVARALRNK-P-LSEWKGALLK 252 (839)
Q Consensus 206 ~~~~~-------------------~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~-~-~~~w~~~l~~ 252 (839)
..... .....-....++..||==.-+..+++.++.- + .+....+.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~q 298 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQ 298 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 42110 1122335677888999999999999999765 3 3344444443
No 198
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0011 Score=72.77 Aligned_cols=158 Identities=13% Similarity=0.136 Sum_probs=95.7
Q ss_pred ccccchHHHHHHHHHHhc------CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHH
Q 003203 35 KSFESRKSILCDILDWLT------SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIA 108 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 108 (839)
++-+|.++..+++++.+. +-+-++++++|++|+|||++|+.++..+..+ | +-++++...|+.++...=-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--F---fRfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--F---FRFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--e---EEEeccccccHHhhcccce
Confidence 457899999999999986 3345799999999999999999999888643 3 3466777777776642211
Q ss_pred HHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc------ccccccccCCC-------------CCCCceEEEE
Q 003203 109 DQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI------DLVTVGIPFGN-------------AHRGCKILLA 169 (839)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~------~~~~l~~~l~~-------------~~~~s~iivT 169 (839)
.. .......+.+-++... -..-|+.+|.|+... --.++...+.+ .-.=|+|++.
T Consensus 486 TY------VGAMPGkiIq~LK~v~-t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFi 558 (906)
T KOG2004|consen 486 TY------VGAMPGKIIQCLKKVK-TENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFI 558 (906)
T ss_pred ee------eccCChHHHHHHHhhC-CCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEE
Confidence 11 1122222222233332 356688889987431 11111111111 1123566653
Q ss_pred eCchhhh---hhhcCccceEEccCCCHHHHHHHHHHHh
Q 003203 170 SRYRDIL---VSEMHSQYNYCVSVLNKEEAWSLFKKMV 204 (839)
Q Consensus 170 tr~~~~~---~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 204 (839)
.....+. ....+.-..+++.+...+|-.++-.++.
T Consensus 559 cTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 559 CTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 3333222 1123344689999999999998888777
No 199
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.001 Score=74.77 Aligned_cols=177 Identities=20% Similarity=0.252 Sum_probs=109.2
Q ss_pred CccccchH---HHHHHHHHHhcCCC---------eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHH
Q 003203 34 YKSFESRK---SILCDILDWLTSPN---------VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVK 101 (839)
Q Consensus 34 ~~~fvgR~---~~~~~l~~~l~~~~---------~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 101 (839)
..++.|-+ +|++++++.|.+++ .+=+.++|++|.|||-||++++-...+- |++++...=+
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGSEFv- 381 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGSEFV- 381 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechHHHH-
Confidence 45667766 45666666666431 4568899999999999999999776543 5566543211
Q ss_pred HHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc-----------------cccccccCCCCC--C
Q 003203 102 RIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID-----------------LVTVGIPFGNAH--R 162 (839)
Q Consensus 102 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~-----------------~~~l~~~l~~~~--~ 162 (839)
+.+. ......++.++.....+.+..|.+|+++...- +.++...+..+. .
T Consensus 382 -------E~~~-----g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 382 -------EMFV-----GVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred -------HHhc-----ccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 1111 11134556677777677899999998875311 222222222222 2
Q ss_pred CceEEEEeCchhhhhhh-c---CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHH
Q 003203 163 GCKILLASRYRDILVSE-M---HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAI 231 (839)
Q Consensus 163 ~s~iivTtr~~~~~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 231 (839)
+.-++-+|+..+++..+ . ..++.+.++.-+..+-.++|.-++..-..+.+..++.+ |+...-|++=|.
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 33344456655554211 1 22467778888888999999999966554455566666 999999888653
No 200
>PHA00729 NTP-binding motif containing protein
Probab=97.48 E-value=0.0016 Score=63.06 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=29.9
Q ss_pred HHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 45 CDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 45 ~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
+.+.+.+...+...|+|+|.+|+||||||..+.++..
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455556666667899999999999999999998864
No 201
>PRK08116 hypothetical protein; Validated
Probab=97.44 E-value=0.00041 Score=70.44 Aligned_cols=102 Identities=21% Similarity=0.224 Sum_probs=58.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCc
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENK 136 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (839)
..+.|+|.+|+|||.||..+++....+ ...+++++ ..+++..+........ ......+.+.+. +..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~-----~~~~~~~~~~l~-~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG-----KEDENEIIRSLV-NAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc-----cccHHHHHHHhc-CCC
Confidence 458899999999999999999998754 33456664 3344455544332111 111223444443 233
Q ss_pred EEEEEeCCCC--cccccc--ccccCCC-CCCCceEEEEeCch
Q 003203 137 ILVILDDICT--SIDLVT--VGIPFGN-AHRGCKILLASRYR 173 (839)
Q Consensus 137 ~LlVlDdv~~--~~~~~~--l~~~l~~-~~~~s~iivTtr~~ 173 (839)
||||||+.. ..+|.. +...+.. ...+..+|+||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 899999943 233321 2111111 12456788888754
No 202
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=9e-05 Score=72.16 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=63.1
Q ss_pred hhcCCCCccEEEeCCCccc---ccCccccCCCCCcEEEccCCCcCC-Cccc-CCCCCCCEEEccCCCCC--CCchhhcCC
Q 003203 426 FFTGMSKLRGLALSEMQLL---SLPPSVHLLSNLQTLCLDQCVVGD-ISII-GNLKKLEILSLVDSDIE--RLPNEIGQL 498 (839)
Q Consensus 426 ~~~~l~~L~~L~l~~~~~~---~lp~~~~~l~~L~~L~l~~~~~~~-~~~~-~~l~~L~~L~l~~~~l~--~lp~~i~~l 498 (839)
+-..++.++.|||.+|.++ ++-..+.++++|++|+++.|.+.. +... -.+.+|++|-|.++.+. ..-..+..+
T Consensus 66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL 145 (418)
T ss_pred HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence 3456788999999999887 445556788999999999988776 3444 36678888888888655 455566778
Q ss_pred CccCeEecCCCc
Q 003203 499 TQLRCLDLSFCR 510 (839)
Q Consensus 499 ~~L~~L~l~~~~ 510 (839)
+.++.|+++.|.
T Consensus 146 P~vtelHmS~N~ 157 (418)
T KOG2982|consen 146 PKVTELHMSDNS 157 (418)
T ss_pred hhhhhhhhccch
Confidence 888888877763
No 203
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0031 Score=61.68 Aligned_cols=171 Identities=19% Similarity=0.214 Sum_probs=99.3
Q ss_pred ccccchHHHHHHHHHHhc---------C---CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHH
Q 003203 35 KSFESRKSILCDILDWLT---------S---PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKR 102 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~---------~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 102 (839)
..+-|-|...+.|.+... . ..-+-|.++|++|.||+.||++|+..... -|+++|...
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS-------TFFSvSSSD---- 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS-------TFFSVSSSD---- 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC-------ceEEeehHH----
Confidence 445666666666666543 1 12467899999999999999999977642 245565532
Q ss_pred HHHHHHH-HhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc---------ccccccc-------ccCCCCCCCce
Q 003203 103 IQDEIAD-QLCLELCKGTESERARTLFDRLWKENKILVILDDICTS---------IDLVTVG-------IPFGNAHRGCK 165 (839)
Q Consensus 103 ~~~~i~~-~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~---------~~~~~l~-------~~l~~~~~~s~ 165 (839)
+.+ .+|. ....+..+++-..++++-+|++|.++.. +....+. ........|..
T Consensus 202 ----LvSKWmGE------SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvL 271 (439)
T KOG0739|consen 202 ----LVSKWMGE------SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVL 271 (439)
T ss_pred ----HHHHHhcc------HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceE
Confidence 222 2221 1233445555555679999999999743 1111111 12233456777
Q ss_pred EEEEeCchhhhhhhcCc--cceEEccCCCHHHHHH-HHHHHhCCCCCCcchHHHHHHHHHHhCCch
Q 003203 166 ILLASRYRDILVSEMHS--QYNYCVSVLNKEEAWS-LFKKMVGDYVEDSDLESIAIQVANECGGLP 228 (839)
Q Consensus 166 iivTtr~~~~~~~~~~~--~~~~~l~~L~~~ea~~-Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~P 228 (839)
|+-+|..+.++.+.+.. ...+-+ ||.+..|+. +|+-+.|+.... -.++-.+++.++.+|.-
T Consensus 272 VLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp~~-LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 272 VLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTPHV-LTEQDFKELARKTEGYS 335 (439)
T ss_pred EEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCccc-cchhhHHHHHhhcCCCC
Confidence 77788888776533332 223322 566666654 666677764322 12233566777777654
No 204
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.43 E-value=0.00061 Score=76.48 Aligned_cols=53 Identities=30% Similarity=0.367 Sum_probs=43.6
Q ss_pred cCCCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 29 RSNQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..|....+++|.+..++.+...+......-+.|+|++|+|||++|+.+++..+
T Consensus 59 ~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 59 TRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred hCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 34566678999999999999887765556778999999999999999987543
No 205
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00039 Score=78.74 Aligned_cols=159 Identities=14% Similarity=0.198 Sum_probs=98.6
Q ss_pred CccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCC----eEEEEEEecCCCHHHHHHHHHH
Q 003203 34 YKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFD----QVIFVLASSTANVKRIQDEIAD 109 (839)
Q Consensus 34 ~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~----~~~wv~~~~~~~~~~~~~~i~~ 109 (839)
..+.+||++|+.++++.|......--.++|.+|+|||++|.-++.++-..+--. ..++. -++..
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s------------LD~g~ 236 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS------------LDLGS 236 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE------------ecHHH
Confidence 467899999999999999854434446899999999999999999886542211 11110 11222
Q ss_pred HhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc--------cccccccCCCCCCC-ceEEEEeCchhhhh---
Q 003203 110 QLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID--------LVTVGIPFGNAHRG-CKILLASRYRDILV--- 177 (839)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~--------~~~l~~~l~~~~~~-s~iivTtr~~~~~~--- 177 (839)
-.........-.+.+..+.+.+.+.+++.+++|.++.... .++-...-|....| -++|-.|...+--.
T Consensus 237 LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~iE 316 (786)
T COG0542 237 LVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYIE 316 (786)
T ss_pred HhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHhh
Confidence 2222333445567777888888766699999999875421 22211111112223 34554444333211
Q ss_pred ---hhcCccceEEccCCCHHHHHHHHHHHh
Q 003203 178 ---SEMHSQYNYCVSVLNKEEAWSLFKKMV 204 (839)
Q Consensus 178 ---~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 204 (839)
......+.+.+..-+.+++..+++-..
T Consensus 317 KD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 317 KDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred hchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 012335688899999999999997665
No 206
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.43 E-value=0.001 Score=70.74 Aligned_cols=142 Identities=15% Similarity=0.090 Sum_probs=87.5
Q ss_pred cccchHHHHHHHHHHhc-CCCeeE-EEEEcCCCCcHHHHHHHHHHHHHHhc-------------------cCCeEEEEEE
Q 003203 36 SFESRKSILCDILDWLT-SPNVNM-IGVYGIGGVGKTALMHEVLFEAKKQN-------------------LFDQVIFVLA 94 (839)
Q Consensus 36 ~fvgR~~~~~~l~~~l~-~~~~~~-v~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~ 94 (839)
.++|.+....++..+.. .++.+. +.++|++|+||||+|..+++.+-... ....+..++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 46778888888998887 444554 99999999999999999999876332 1234555655
Q ss_pred ecCCC---HHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccccCCCCCCCceEEEE
Q 003203 95 SSTAN---VKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI--DLVTVGIPFGNAHRGCKILLA 169 (839)
Q Consensus 95 ~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivT 169 (839)
+.... ..+..+++.+....... .++.-++|+|+++... .-.++...+.......++|++
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~ 145 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILI 145 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEE
Confidence 55544 23333333332211110 2577889999998652 334444444444567788888
Q ss_pred eCchh-hhhhhcCccceEEccCCCH
Q 003203 170 SRYRD-ILVSEMHSQYNYCVSVLNK 193 (839)
Q Consensus 170 tr~~~-~~~~~~~~~~~~~l~~L~~ 193 (839)
|.... +...-......+++++.+.
T Consensus 146 ~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 146 TNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred cCChhhccchhhhcceeeecCCchH
Confidence 87443 3332233356777777443
No 207
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.42 E-value=7.3e-05 Score=84.62 Aligned_cols=66 Identities=15% Similarity=0.085 Sum_probs=36.0
Q ss_pred EEEEecCCCcccccchhhhhcCCCccEEEEecccchHHHhhcccCCccccCCCccccccccceeecccccccccccc
Q 003203 710 IIKVRNCDRLKNVFSFSIARGLPQLQTITVIKCKNVEEIFMMERDGYVDCKEVNKIEFSQLRSLTLKFLPRLRSFYF 786 (839)
Q Consensus 710 ~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~ 786 (839)
.+.+.+|+.++ ...........+|+.|.+..|...+.-...... ..+..+..+.+.+|+....-..
T Consensus 380 ~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~----------~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 380 ELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLA----------DSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred HHHhcCCcccc-hHHHHHhccCCccceEecccCccccccchHHHh----------hhhhccccCCccCcccccchhh
Confidence 45667777773 211112233444888888888766543211100 0156677778887776655443
No 208
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.41 E-value=0.0011 Score=77.52 Aligned_cols=158 Identities=13% Similarity=0.134 Sum_probs=89.6
Q ss_pred ccccchHHHHHHHHHHhc------CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHH
Q 003203 35 KSFESRKSILCDILDWLT------SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIA 108 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 108 (839)
...+|.++..++|++++. .....++.++|++|+||||+|+.++..... .| +-+..+...+..++...-.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~--~~---~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGR--KY---VRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCC--CE---EEEEcCCCCCHHHhccchh
Confidence 458899999999998886 234568999999999999999999976642 22 2233444344433322111
Q ss_pred HHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc------cccccccCCC---------------CCCCceEE
Q 003203 109 DQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID------LVTVGIPFGN---------------AHRGCKIL 167 (839)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~------~~~l~~~l~~---------------~~~~s~ii 167 (839)
...+ .........+ .... ...-++++|.++.... ...+...+.+ .-.+..+|
T Consensus 397 ~~~g-----~~~G~~~~~l-~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 397 TYIG-----SMPGKLIQKM-AKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred ccCC-----CCCcHHHHHH-HhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 1111 1111111111 1111 1344788999975421 1222222211 11344455
Q ss_pred EEeCchhhhhhhcCccceEEccCCCHHHHHHHHHHHh
Q 003203 168 LASRYRDILVSEMHSQYNYCVSVLNKEEAWSLFKKMV 204 (839)
Q Consensus 168 vTtr~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 204 (839)
.|+....+.....+...++++.+++.+|-.++.+++.
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 5665544433234445688999999999999888777
No 209
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.40 E-value=0.0036 Score=64.41 Aligned_cols=149 Identities=14% Similarity=0.175 Sum_probs=80.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHH---
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLW--- 132 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~--- 132 (839)
.+.++|||++|.|||.+|+.++++.... ++.++.. +|.+. . .......+..+++...
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg~~-------~i~vsa~--------eL~sk----~-vGEsEk~IR~~F~~A~~~a 207 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMGIE-------PIVMSAG--------ELESE----N-AGEPGKLIRQRYREAADII 207 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcCCC-------eEEEEHH--------HhhcC----c-CCcHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999988643 3333321 01100 0 0011122222222221
Q ss_pred --cCCcEEEEEeCCCCcc------c--c------cccccc--------C------CCCCCCceEEEEeCchhhhhhhcCc
Q 003203 133 --KENKILVILDDICTSI------D--L------VTVGIP--------F------GNAHRGCKILLASRYRDILVSEMHS 182 (839)
Q Consensus 133 --~~~~~LlVlDdv~~~~------~--~------~~l~~~--------l------~~~~~~s~iivTtr~~~~~~~~~~~ 182 (839)
++++.+|++||++... + . ..++.. + .....+..||+||.....+......
T Consensus 208 ~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlR 287 (413)
T PLN00020 208 KKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIR 287 (413)
T ss_pred hccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcC
Confidence 3688999999987321 0 0 111111 0 1224567788999877654212211
Q ss_pred ----cceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchh
Q 003203 183 ----QYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPL 229 (839)
Q Consensus 183 ----~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl 229 (839)
...| ..-+.++=.++++.+..+...+ ..-..+|++...|-|+
T Consensus 288 pGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 288 DGRMEKFY--WAPTREDRIGVVHGIFRDDGVS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred CCCCCcee--CCCCHHHHHHHHHHHhccCCCC---HHHHHHHHHcCCCCCc
Confidence 2233 3345667777787777543322 1225567777777664
No 210
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00098 Score=71.64 Aligned_cols=130 Identities=20% Similarity=0.302 Sum_probs=84.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCC
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKEN 135 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 135 (839)
..=|.+||++|+|||-||++|++.-... |+.+..+ +++.. .. ......++.++++-....
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGP----ELlNk---YV------GESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGP----ELLNK---YV------GESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCH----HHHHH---Hh------hhHHHHHHHHHHHhhcCC
Confidence 3457899999999999999999987643 4554432 12111 11 123345677788877789
Q ss_pred cEEEEEeCCCCcc-------------ccccccccCCC--CCCCceEEEEeCchhhhhhh-cCc---cceEEccCCCHHHH
Q 003203 136 KILVILDDICTSI-------------DLVTVGIPFGN--AHRGCKILLASRYRDILVSE-MHS---QYNYCVSVLNKEEA 196 (839)
Q Consensus 136 ~~LlVlDdv~~~~-------------~~~~l~~~l~~--~~~~s~iivTtr~~~~~~~~-~~~---~~~~~l~~L~~~ea 196 (839)
++.|++|.++... .+.++..-+.. ...|.-||-+|..+++...+ ..+ +...-++.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 9999999997431 12333333322 34666777777766653211 122 45667777788999
Q ss_pred HHHHHHHhC
Q 003203 197 WSLFKKMVG 205 (839)
Q Consensus 197 ~~Lf~~~~~ 205 (839)
.++++....
T Consensus 685 ~~ILK~~tk 693 (802)
T KOG0733|consen 685 VAILKTITK 693 (802)
T ss_pred HHHHHHHhc
Confidence 999999886
No 211
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.40 E-value=0.0045 Score=72.86 Aligned_cols=103 Identities=16% Similarity=0.128 Sum_probs=60.4
Q ss_pred ccccchHHHHHHHHHHhcC-------C--CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHH
Q 003203 35 KSFESRKSILCDILDWLTS-------P--NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQD 105 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~~-------~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 105 (839)
..++|.+..++.+.+.+.. + ...++.++|+.|+|||++|+.++.... ...+.++.++-.+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhcc----
Confidence 4678888888888888762 1 134678999999999999999988762 334556555422211
Q ss_pred HHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 003203 106 EIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS 147 (839)
Q Consensus 106 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~ 147 (839)
.+...++....-.. .+....+.+.+.....-+++||+++..
T Consensus 525 ~~~~lig~~~gyvg-~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 525 TVSRLIGAPPGYVG-FEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred cHHHHhcCCCCCcc-cchhhHHHHHHHhCCCeEEEEechhhc
Confidence 11122221110000 111222334444445569999999854
No 212
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.37 E-value=0.00067 Score=74.49 Aligned_cols=105 Identities=18% Similarity=0.275 Sum_probs=77.3
Q ss_pred CccccCCCCCccccchHHHHHHHHHHhc----------------------------------CCCeeEEEEEcCCCCcHH
Q 003203 25 DMWLRSNQGYKSFESRKSILCDILDWLT----------------------------------SPNVNMIGVYGIGGVGKT 70 (839)
Q Consensus 25 ~~~~~~~~~~~~fvgR~~~~~~l~~~l~----------------------------------~~~~~~v~I~G~~GiGKT 70 (839)
++....|..+.++.|-+..-..++.||. .+..++..++|++|+|||
T Consensus 261 WVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKT 340 (877)
T KOG1969|consen 261 WVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKT 340 (877)
T ss_pred eecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChh
Confidence 3445556666777777777777777774 124679999999999999
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 003203 71 ALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS 147 (839)
Q Consensus 71 tLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~ 147 (839)
|||..++++.. | .++=|++|...+...+-..|...+....... ..+++.-+|+|.++-.
T Consensus 341 TLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 341 TLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------ADSRPVCLVIDEIDGA 399 (877)
T ss_pred HHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhccccc-------------cCCCcceEEEecccCC
Confidence 99999987653 2 5888999999998888888877664332110 1258888999999754
No 213
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.36 E-value=0.00045 Score=67.56 Aligned_cols=35 Identities=26% Similarity=0.571 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEE
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLA 94 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 94 (839)
.++|+|..|+||||++..+...... .|+.+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~--~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRH--KFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcc--cCCEEEEEec
Confidence 5679999999999999999988764 4887777754
No 214
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.35 E-value=0.0079 Score=62.88 Aligned_cols=105 Identities=21% Similarity=0.205 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCc-hhhhhhhcCccceEEccCCCH
Q 003203 121 SERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRY-RDILVSEMHSQYNYCVSVLNK 193 (839)
Q Consensus 121 ~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~-~~~~~~~~~~~~~~~l~~L~~ 193 (839)
.+.++.+.+.+. .+++-++|+|+++.. .....+...+..-.+++.+|++|.+ ..+..+.......+.+.+++.
T Consensus 114 idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~ 193 (342)
T PRK06964 114 IEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAP 193 (342)
T ss_pred HHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCH
Confidence 455555555553 245668889999865 3455555555444566666666655 444443344567899999999
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHH
Q 003203 194 EEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIV 234 (839)
Q Consensus 194 ~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 234 (839)
++..+.+... +. .+ ...++..++|.|.....+
T Consensus 194 ~~~~~~L~~~-~~---~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 194 EAAAAWLAAQ-GV---AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred HHHHHHHHHc-CC---Ch-----HHHHHHHcCCCHHHHHHH
Confidence 9999999875 21 11 224577889999755443
No 215
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.34 E-value=1.5e-05 Score=68.26 Aligned_cols=107 Identities=16% Similarity=0.250 Sum_probs=56.1
Q ss_pred ceEEecCCCCCCCCCCC----CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEcc
Q 003203 387 SAVFLNDIKTGVLPEGL----EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLD 462 (839)
Q Consensus 387 ~~l~l~~~~~~~l~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 462 (839)
..+.+++|.+..+++.. ....|...++++|. +.++|..+-.+++.+..|++++|.++++|..+..++.||.|+++
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 34555555555444322 23344455555554 34555555555555566666666666666555555555555555
Q ss_pred CCCcCC-CcccCCCCCCCEEEccCCCCCCCchh
Q 003203 463 QCVVGD-ISIIGNLKKLEILSLVDSDIERLPNE 494 (839)
Q Consensus 463 ~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~ 494 (839)
.|.+.. |..+..|.+|-+|+..++.+..+|-.
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 555444 44444455555555555555544443
No 216
>PRK08118 topology modulation protein; Reviewed
Probab=97.34 E-value=0.00011 Score=68.89 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHh-ccCCeEEE
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQ-NLFDQVIF 91 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~w 91 (839)
+.|.|+|++|+||||+|+++++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358899999999999999999987654 44666776
No 217
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.31 E-value=0.0027 Score=75.19 Aligned_cols=158 Identities=16% Similarity=0.143 Sum_probs=84.3
Q ss_pred ccccchHHHHHHHHHHhc------CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHH
Q 003203 35 KSFESRKSILCDILDWLT------SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIA 108 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 108 (839)
..++|.++..+++.+++. ..+.+++.++|++|+|||++|+.+++..... | +-++++...+..++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~--~---~~i~~~~~~~~~~i~g~-- 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK--F---VRFSLGGVRDEAEIRGH-- 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC--e---EEEeCCCcccHHHHcCC--
Confidence 347888888888888764 2234589999999999999999999887522 3 22223332233222110
Q ss_pred HHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc------ccccccc--------CCCC-------CCCceEE
Q 003203 109 DQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID------LVTVGIP--------FGNA-------HRGCKIL 167 (839)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~------~~~l~~~--------l~~~-------~~~s~ii 167 (839)
......... ..+...+.... .++-+|++|+++.... ...+... |.+. ..+..+|
T Consensus 393 ---~~~~~g~~~-g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 393 ---RRTYVGAMP-GRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ---CCceeCCCC-chHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 000011111 11112222222 2334789999975421 1111111 1111 1233445
Q ss_pred EEeCchhhh-hhhcCccceEEccCCCHHHHHHHHHHHh
Q 003203 168 LASRYRDIL-VSEMHSQYNYCVSVLNKEEAWSLFKKMV 204 (839)
Q Consensus 168 vTtr~~~~~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 204 (839)
.||...... .........+++.+++.++-.++++.+.
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 555544321 1122334578999999999888887665
No 218
>PRK08181 transposase; Validated
Probab=97.29 E-value=0.00065 Score=68.51 Aligned_cols=105 Identities=16% Similarity=0.152 Sum_probs=58.5
Q ss_pred HHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHH
Q 003203 49 DWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLF 128 (839)
Q Consensus 49 ~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 128 (839)
+|+... .-+.|+|++|+|||.||..+.+....+ ...++|++ ..++..++.... .... .....
T Consensus 101 ~~~~~~--~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~------~~~L~~~l~~a~----~~~~----~~~~l 162 (269)
T PRK08181 101 SWLAKG--ANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTR------TTDLVQKLQVAR----RELQ----LESAI 162 (269)
T ss_pred HHHhcC--ceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeee------HHHHHHHHHHHH----hCCc----HHHHH
Confidence 565433 568999999999999999999887643 33456653 344544443321 1111 12234
Q ss_pred HHHHcCCcEEEEEeCCCCc--ccc--ccccccCCCCCCCceEEEEeCch
Q 003203 129 DRLWKENKILVILDDICTS--IDL--VTVGIPFGNAHRGCKILLASRYR 173 (839)
Q Consensus 129 ~~l~~~~~~LlVlDdv~~~--~~~--~~l~~~l~~~~~~s~iivTtr~~ 173 (839)
+.+. +.=|||+||+... ..+ ..+...+.....+..+||||+..
T Consensus 163 ~~l~--~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 163 AKLD--KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred HHHh--cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 4442 4569999999643 111 11222221111123588888755
No 219
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.28 E-value=0.0019 Score=76.46 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=38.0
Q ss_pred ccccchHHHHHHHHHHhc-------CC--CeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 35 KSFESRKSILCDILDWLT-------SP--NVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~-------~~--~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..++|.+..++.+.+.+. ++ ...++.++|+.|+|||.+|+.++..+-
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 468899999999888874 11 234789999999999999999988764
No 220
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.28 E-value=0.0029 Score=75.64 Aligned_cols=60 Identities=17% Similarity=0.135 Sum_probs=44.1
Q ss_pred ccccchHHHHHHHHHHhcCC---------CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec
Q 003203 35 KSFESRKSILCDILDWLTSP---------NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS 96 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 96 (839)
..++|.+..++.+...+... ...++.+.|+.|+|||++|+.+....... -...+.++++.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~ 633 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSE 633 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechh
Confidence 46899999999999988621 13468899999999999999999876422 22345555554
No 221
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.24 E-value=0.00052 Score=63.37 Aligned_cols=103 Identities=18% Similarity=0.193 Sum_probs=85.0
Q ss_pred cccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccC--ccccCCCCCcEEEc
Q 003203 384 KNCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLP--PSVHLLSNLQTLCL 461 (839)
Q Consensus 384 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l 461 (839)
.....+++.+|.+..++..-.++.|.+|.+..|.. ..+.+.+-.-+++|..|.|.+|++..+- ..+..++.|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrI-t~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRI-TRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcc-eeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 35667899999998888877999999999988874 6677666667888999999999988653 35678999999999
Q ss_pred cCCCcCC-----CcccCCCCCCCEEEccCCC
Q 003203 462 DQCVVGD-----ISIIGNLKKLEILSLVDSD 487 (839)
Q Consensus 462 ~~~~~~~-----~~~~~~l~~L~~L~l~~~~ 487 (839)
-+|.++. ...+..+++|++||.++-.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 9998876 2568899999999998753
No 222
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=2.1e-05 Score=75.73 Aligned_cols=105 Identities=28% Similarity=0.343 Sum_probs=65.8
Q ss_pred CCCCcEEEccCCCcCCCcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCc-hhhcCccccCeEEc
Q 003203 453 LSNLQTLCLDQCVVGDISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPP-NVISKLTQLEELYM 531 (839)
Q Consensus 453 l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~-~~l~~l~~L~~L~l 531 (839)
+.+.+.|+..+|.+.++....+|+.|++|.|+-|.|+++.. +..+++|++|.|..|. +.++.. ..+.++++|+.|+|
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 44566677777777777667777777777777777776643 5677777777777764 554433 22567777777777
Q ss_pred cCCccccccccccccccccchhhhccCCCCCEEE
Q 003203 532 GNTSVKWEFEGLNIERSNASLQELRHLSQLTTLE 565 (839)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~ 565 (839)
..|+-...- .......-++-||+|++|+
T Consensus 96 ~ENPCc~~a------g~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEA------GQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCccccc------chhHHHHHHHHcccchhcc
Confidence 766532110 1112234456677777765
No 223
>PRK04132 replication factor C small subunit; Provisional
Probab=97.23 E-value=0.0054 Score=71.34 Aligned_cols=155 Identities=10% Similarity=0.011 Sum_probs=97.9
Q ss_pred EEc--CCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEE
Q 003203 61 VYG--IGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKIL 138 (839)
Q Consensus 61 I~G--~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 138 (839)
+.| |.++||||+|..++++.-..+.-..++-++.++..+...+. ++...+....+ +...+.-+
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~--------------~~~~~~KV 633 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIR-EKVKEFARTKP--------------IGGASFKI 633 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC--------------cCCCCCEE
Confidence 347 88999999999999987432212346778888766655443 33332211110 00124579
Q ss_pred EEEeCCCCcc--ccccccccCCCCCCCceEEEEeCchhh-hhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHH
Q 003203 139 VILDDICTSI--DLVTVGIPFGNAHRGCKILLASRYRDI-LVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLES 215 (839)
Q Consensus 139 lVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTtr~~~~-~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~ 215 (839)
+|+|+++... +..++...+.......++|+++.+..- ..........+++++++.++..+.+...+......- .++
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i-~~e 712 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL-TEE 712 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC-CHH
Confidence 9999999763 455555555444456777777666543 222234467899999999999998887764322111 145
Q ss_pred HHHHHHHHhCCchhHH
Q 003203 216 IAIQVANECGGLPLAI 231 (839)
Q Consensus 216 ~~~~I~~~~~G~Plai 231 (839)
....|++.++|.+...
T Consensus 713 ~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 713 GLQAILYIAEGDMRRA 728 (846)
T ss_pred HHHHHHHHcCCCHHHH
Confidence 6789999999987543
No 224
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0063 Score=64.49 Aligned_cols=148 Identities=20% Similarity=0.302 Sum_probs=81.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcC
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKE 134 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 134 (839)
....+.+.|++|+|||+||.+++..-. |..+--++....-...+- .....+...++..-+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKiiSpe~miG~sEs---------------aKc~~i~k~F~DAYkS 597 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSD----FPFVKIISPEDMIGLSES---------------AKCAHIKKIFEDAYKS 597 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEeChHHccCccHH---------------HHHHHHHHHHHHhhcC
Confidence 355788999999999999999886543 664444322211111110 0001111122222134
Q ss_pred CcEEEEEeCCCCcccccccccc------------CC---CCCCCceEEEEeCchhhhhhhcCc----cceEEccCCCH-H
Q 003203 135 NKILVILDDICTSIDLVTVGIP------------FG---NAHRGCKILLASRYRDILVSEMHS----QYNYCVSVLNK-E 194 (839)
Q Consensus 135 ~~~LlVlDdv~~~~~~~~l~~~------------l~---~~~~~s~iivTtr~~~~~~~~~~~----~~~~~l~~L~~-~ 194 (839)
.--.||+||+...-+|-.+... +. +.++.--|+-||..+.++. .++. ...|.++.++. +
T Consensus 598 ~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~-~m~i~~~F~~~i~Vpnl~~~~ 676 (744)
T KOG0741|consen 598 PLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ-EMGILDCFSSTIHVPNLTTGE 676 (744)
T ss_pred cceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH-HcCHHHhhhheeecCccCchH
Confidence 5578999999876555443322 22 2233333555666677765 3333 45789999986 7
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHh
Q 003203 195 EAWSLFKKMVGDYVEDSDLESIAIQVANEC 224 (839)
Q Consensus 195 ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~ 224 (839)
+..+.+...-- ..+.+.+.++++...++
T Consensus 677 ~~~~vl~~~n~--fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 677 QLLEVLEELNI--FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHHHccC--CCcchhHHHHHHHhccc
Confidence 77777766541 12334445556666555
No 225
>PRK07261 topology modulation protein; Provisional
Probab=97.19 E-value=0.00097 Score=62.88 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHh-ccCCeEEE
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAKKQ-NLFDQVIF 91 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~w 91 (839)
.|+|+|++|+||||||+++....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 47899999999999999998775422 13344555
No 226
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.19 E-value=0.0007 Score=64.72 Aligned_cols=52 Identities=29% Similarity=0.323 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEE
Q 003203 40 RKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVL 93 (839)
Q Consensus 40 R~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 93 (839)
+..+-...++.+. +..++.+.|++|.|||.||.+.+.+.-..+.|+.++++.
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 4455556666666 446999999999999999999887765567888887763
No 227
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.16 E-value=0.011 Score=59.34 Aligned_cols=170 Identities=21% Similarity=0.209 Sum_probs=102.6
Q ss_pred CCccccchHHHHHHHHHHhc----CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCC-HHHHHHHH
Q 003203 33 GYKSFESRKSILCDILDWLT----SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTAN-VKRIQDEI 107 (839)
Q Consensus 33 ~~~~fvgR~~~~~~l~~~l~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 107 (839)
+...++|-..+-+.+..|+. .++..-|.|+|+.|.|||+|......+. +..-+..+-+....... -+-.++.|
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~--q~~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI--QENGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH--HhcCCeEEEEEECccchhhHHHHHHH
Confidence 56778999999999988886 3455678899999999999999888872 22223344444443322 23355666
Q ss_pred HHHhhhhcc-----CCCchHHHHHHHHHHHc-----CCcEEEEEeCCCCcccc-c-ccc-ccCC----CCCCCceEEEEe
Q 003203 108 ADQLCLELC-----KGTESERARTLFDRLWK-----ENKILVILDDICTSIDL-V-TVG-IPFG----NAHRGCKILLAS 170 (839)
Q Consensus 108 ~~~l~~~~~-----~~~~~~~~~~~~~~l~~-----~~~~LlVlDdv~~~~~~-~-~l~-~~l~----~~~~~s~iivTt 170 (839)
.+++..+.. ..+-.+....++..+.+ +.++.+|+|.++-.... . .+. ..|. ...|-+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 666654332 22344556666666653 35688888888643210 0 000 0111 133556677888
Q ss_pred Cchhhh------hhhcCccceEEccCCCHHHHHHHHHHHh
Q 003203 171 RYRDIL------VSEMHSQYNYCVSVLNKEEAWSLFKKMV 204 (839)
Q Consensus 171 r~~~~~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 204 (839)
|-...- .+......++-++.+.-++-..++++..
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 865432 1122223356666777777777777776
No 228
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.15 E-value=0.0023 Score=70.86 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=51.2
Q ss_pred CccccCCCCCccccchHHHHHHHHHHhcC-----CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEe
Q 003203 25 DMWLRSNQGYKSFESRKSILCDILDWLTS-----PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLAS 95 (839)
Q Consensus 25 ~~~~~~~~~~~~fvgR~~~~~~l~~~l~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 95 (839)
++....|....+++--.+.++++.+||.. ...+++.+.||+|+||||.++.++++.. |+.+-|.+..
T Consensus 9 W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~np~ 80 (519)
T PF03215_consen 9 WVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWINPV 80 (519)
T ss_pred cchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecCCC
Confidence 44445556666677777889999999972 2357999999999999999999998874 6677786543
No 229
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.12 E-value=0.0034 Score=59.73 Aligned_cols=123 Identities=14% Similarity=0.135 Sum_probs=72.4
Q ss_pred CccccCCCCCccccchHHHHHHHHHHhc----CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCH
Q 003203 25 DMWLRSNQGYKSFESRKSILCDILDWLT----SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANV 100 (839)
Q Consensus 25 ~~~~~~~~~~~~fvgR~~~~~~l~~~l~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 100 (839)
+++...+.+...++|-+...+.+.+--. .....-|.+||--|+|||+|++++.+.+..+ .-..+-|+-.+-.++
T Consensus 50 pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glrLVEV~k~dl~~L 127 (287)
T COG2607 50 PVPDPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLRLVEVDKEDLATL 127 (287)
T ss_pred CCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCeEEEEcHHHHhhH
Confidence 4444555556678898877777765433 3344578899999999999999999998755 333333322221222
Q ss_pred HHHHHHHHHHhhhhccCCCchHHHHHHHHHHH-cCCcEEEEEeCCCC---ccccccccccCC---CCCCCceEEEEeCch
Q 003203 101 KRIQDEIADQLCLELCKGTESERARTLFDRLW-KENKILVILDDICT---SIDLVTVGIPFG---NAHRGCKILLASRYR 173 (839)
Q Consensus 101 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~~~~~LlVlDdv~~---~~~~~~l~~~l~---~~~~~s~iivTtr~~ 173 (839)
. .+.+.+. ...|+.|+.||..= ++....+...+. ...+...++..|.++
T Consensus 128 p------------------------~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 128 P------------------------DLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred H------------------------HHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 1 2222222 36899999999852 233444444433 123444455544443
No 230
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0029 Score=66.98 Aligned_cols=93 Identities=26% Similarity=0.382 Sum_probs=61.3
Q ss_pred Cccccch---HHHHHHHHHHhcCCC---------eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHH
Q 003203 34 YKSFESR---KSILCDILDWLTSPN---------VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVK 101 (839)
Q Consensus 34 ~~~fvgR---~~~~~~l~~~l~~~~---------~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 101 (839)
.+++-|- .+|++++++.|.++. .+=|.++|++|.|||-||++++-...+- | |...+..|+
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFd-- 374 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFD-- 374 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchh--
Confidence 3445555 467888888887532 3568899999999999999998766543 2 333333332
Q ss_pred HHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCC
Q 003203 102 RIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICT 146 (839)
Q Consensus 102 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~ 146 (839)
++ +- .....+++.+++.-.+.-++.|++|.++.
T Consensus 375 Em----~V--------GvGArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 375 EM----FV--------GVGARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred hh----hh--------cccHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 11 11 12234556677766667899999999874
No 231
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.11 E-value=0.018 Score=56.16 Aligned_cols=213 Identities=13% Similarity=0.132 Sum_probs=122.9
Q ss_pred cCCCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhc----cCCeEEEEEEecC-------
Q 003203 29 RSNQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQN----LFDQVIFVLASST------- 97 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~------- 97 (839)
-.|.......++++....+.......+.+-..++|++|.||-|.+-.+.+++-.-+ .-+..-|.+-+..
T Consensus 7 yrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistv 86 (351)
T KOG2035|consen 7 YRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTV 86 (351)
T ss_pred cCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEe
Confidence 34555566788888888888887777789999999999999999988888763211 1122334322211
Q ss_pred ---C-----------CHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcE-EEEEeCCCCc--cccccccccCCCC
Q 003203 98 ---A-----------NVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKI-LVILDDICTS--IDLVTVGIPFGNA 160 (839)
Q Consensus 98 ---~-----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-LlVlDdv~~~--~~~~~l~~~l~~~ 160 (839)
. .-+-+.+++++..+...+-+. ...+.| ++|+-.++.. +.-.+++.....-
T Consensus 87 sS~yHlEitPSDaG~~DRvViQellKevAQt~qie~------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkY 154 (351)
T KOG2035|consen 87 SSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIET------------QGQRPFKVVVINEADELTRDAQHALRRTMEKY 154 (351)
T ss_pred cccceEEeChhhcCcccHHHHHHHHHHHHhhcchhh------------ccccceEEEEEechHhhhHHHHHHHHHHHHHH
Confidence 1 123345555554433221110 012344 4555555532 2233343333333
Q ss_pred CCCceEEEEeCchh--hhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHHHHh
Q 003203 161 HRGCKILLASRYRD--ILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVARAL 238 (839)
Q Consensus 161 ~~~s~iivTtr~~~--~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L 238 (839)
...+|+|+.-.+-. +.. -....-.++++..+++|....+++....+.. .-.++++.+|+++++|+---...+-...
T Consensus 155 s~~~RlIl~cns~SriIep-IrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~lp~~~l~rIa~kS~~nLRrAllmlE~~ 232 (351)
T KOG2035|consen 155 SSNCRLILVCNSTSRIIEP-IRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-QLPKELLKRIAEKSNRNLRRALLMLEAV 232 (351)
T ss_pred hcCceEEEEecCcccchhH-HhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-cCcHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 45667776443322 111 1122446889999999999999998844322 2227789999999999743222222222
Q ss_pred c--CC---------ChhHHHHHHHHhhc
Q 003203 239 R--NK---------PLSEWKGALLKLRS 255 (839)
Q Consensus 239 ~--~~---------~~~~w~~~l~~l~~ 255 (839)
+ +. ..-+|+-++.+...
T Consensus 233 ~~~n~~~~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 233 RVNNEPFTANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred HhccccccccCCCCCCccHHHHHHHHHH
Confidence 1 11 34579988888743
No 232
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.10 E-value=0.0044 Score=73.81 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=42.5
Q ss_pred ccccchHHHHHHHHHHhcC-------CC--eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec
Q 003203 35 KSFESRKSILCDILDWLTS-------PN--VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS 96 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~~-------~~--~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 96 (839)
..++|.+..++.+...+.. ++ ..++.++|+.|+|||++|+.+++..... -...+.++++.
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se 636 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSE 636 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHH
Confidence 3588999998888888752 11 2478899999999999999998766422 22345555543
No 233
>PRK06526 transposase; Provisional
Probab=97.08 E-value=0.00089 Score=67.20 Aligned_cols=73 Identities=22% Similarity=0.277 Sum_probs=43.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCC
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKEN 135 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 135 (839)
.+.+.|+|++|+|||+||..+.+....++ + .+.|+ +..++..++.... ... ......+.+ .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g-~-~v~f~------t~~~l~~~l~~~~----~~~----~~~~~l~~l--~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAG-H-RVLFA------TAAQWVARLAAAH----HAG----RLQAELVKL--GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCC-C-chhhh------hHHHHHHHHHHHH----hcC----cHHHHHHHh--cc
Confidence 35689999999999999999998876432 2 23443 2334444443221 111 111223333 24
Q ss_pred cEEEEEeCCCC
Q 003203 136 KILVILDDICT 146 (839)
Q Consensus 136 ~~LlVlDdv~~ 146 (839)
.-+||+||+..
T Consensus 160 ~dlLIIDD~g~ 170 (254)
T PRK06526 160 YPLLIVDEVGY 170 (254)
T ss_pred CCEEEEccccc
Confidence 56899999974
No 234
>PRK09183 transposase/IS protein; Provisional
Probab=97.06 E-value=0.0017 Score=65.70 Aligned_cols=26 Identities=38% Similarity=0.484 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
..+.|+|++|+|||+||..+++....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 56889999999999999999887654
No 235
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0053 Score=67.42 Aligned_cols=159 Identities=16% Similarity=0.170 Sum_probs=88.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC--CHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcC
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA--NVKRIQDEIADQLCLELCKGTESERARTLFDRLWKE 134 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 134 (839)
..|.|.|+.|+|||+||+++++... ++....+.+++++.-. .++.+++.+-..+ ...+ ..
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vf----------------se~~-~~ 493 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVF----------------SEAL-WY 493 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHHH----------------HHHH-hh
Confidence 5789999999999999999999987 5555566677666432 2333333322211 1222 25
Q ss_pred CcEEEEEeCCCCc--------ccccc----ccccC----C-CCCCCce--EEEEeCchhhhh----hhcCccceEEccCC
Q 003203 135 NKILVILDDICTS--------IDLVT----VGIPF----G-NAHRGCK--ILLASRYRDILV----SEMHSQYNYCVSVL 191 (839)
Q Consensus 135 ~~~LlVlDdv~~~--------~~~~~----l~~~l----~-~~~~~s~--iivTtr~~~~~~----~~~~~~~~~~l~~L 191 (839)
.+-+|||||++-. .+|.. +...+ . ....+.+ +|.|........ ..........++++
T Consensus 494 ~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap 573 (952)
T KOG0735|consen 494 APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAP 573 (952)
T ss_pred CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCc
Confidence 7899999999732 11111 00000 0 1123333 444444433221 11122346788999
Q ss_pred CHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCc-hhHHHHH
Q 003203 192 NKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGL-PLAIVIV 234 (839)
Q Consensus 192 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plai~~~ 234 (839)
..++=.++++....+........+ ..-+..+|+|. |.-+.++
T Consensus 574 ~~~~R~~IL~~~~s~~~~~~~~~d-Ld~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 574 AVTRRKEILTTIFSKNLSDITMDD-LDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred chhHHHHHHHHHHHhhhhhhhhHH-HHHHHHhcCCccchhHHHH
Confidence 988888888777744332222222 33378888876 5444444
No 236
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.05 E-value=0.0011 Score=68.64 Aligned_cols=47 Identities=15% Similarity=0.243 Sum_probs=41.3
Q ss_pred cccchHHHHHHHHHHhcC------CCeeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 36 SFESRKSILCDILDWLTS------PNVNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 36 ~fvgR~~~~~~l~~~l~~------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
.++|.++.++++++++.. .+.++++|+|++|+||||||+.+++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 699999999999999862 23578999999999999999999998865
No 237
>PRK12377 putative replication protein; Provisional
Probab=97.05 E-value=0.0048 Score=61.45 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=47.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCC
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKEN 135 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 135 (839)
...+.|+|++|+|||.||..+++....+ ...++++++. ++...+...... .. ....+.+.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~----~~---~~~~~l~~l--~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDN----GQ---SGEKFLQEL--CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhc----cc---hHHHHHHHh--cC
Confidence 4678999999999999999999998754 3345666443 344444433211 10 112344444 36
Q ss_pred cEEEEEeCCC
Q 003203 136 KILVILDDIC 145 (839)
Q Consensus 136 ~~LlVlDdv~ 145 (839)
--||||||+.
T Consensus 164 ~dLLiIDDlg 173 (248)
T PRK12377 164 VDLLVLDEIG 173 (248)
T ss_pred CCEEEEcCCC
Confidence 6799999994
No 238
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.04 E-value=0.027 Score=62.30 Aligned_cols=170 Identities=19% Similarity=0.196 Sum_probs=107.7
Q ss_pred CCccccchHHHHHHHHHHhc----C-CCeeEEEEEcCCCCcHHHHHHHHHHHHHH---hc---cCCeEEEEEEecCCCHH
Q 003203 33 GYKSFESRKSILCDILDWLT----S-PNVNMIGVYGIGGVGKTALMHEVLFEAKK---QN---LFDQVIFVLASSTANVK 101 (839)
Q Consensus 33 ~~~~fvgR~~~~~~l~~~l~----~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~---~~---~f~~~~wv~~~~~~~~~ 101 (839)
.+..+-+|+.|..+|-+.+. + .....+.|.|.+|+|||..+..|.+.+.. ++ .| ..+.|+.-.-..+.
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f-~yveINgm~l~~~~ 472 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKF-DYVEINGLRLASPR 472 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCc-cEEEEcceeecCHH
Confidence 44567789999999988876 3 33458999999999999999999997652 22 23 24556666667899
Q ss_pred HHHHHHHHHhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCccc--cccccccCCC-CCCCceEEEEeC--c
Q 003203 102 RIQDEIADQLCLELCKGTESERARTLFDRLW----KENKILVILDDICTSID--LVTVGIPFGN-AHRGCKILLASR--Y 172 (839)
Q Consensus 102 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~~~--~~~l~~~l~~-~~~~s~iivTtr--~ 172 (839)
+++..|..++...... ....+..+-.++. +.+..++++|+++.... -+-+...|.| ..++|+++|.+= .
T Consensus 473 ~~Y~~I~~~lsg~~~~--~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 473 EIYEKIWEALSGERVT--WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHHHHhcccCccc--HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 9999999988665432 2222333334443 23668888899875421 1122222332 346777665432 2
Q ss_pred hhhhh-------hhcCccceEEccCCCHHHHHHHHHHHhC
Q 003203 173 RDILV-------SEMHSQYNYCVSVLNKEEAWSLFKKMVG 205 (839)
Q Consensus 173 ~~~~~-------~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 205 (839)
.+... +..-+...+...|.+.++-.++...+..
T Consensus 551 mdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~ 590 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLK 590 (767)
T ss_pred ccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhc
Confidence 22211 0111235678888999888888888774
No 239
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.03 E-value=0.0058 Score=70.48 Aligned_cols=174 Identities=17% Similarity=0.234 Sum_probs=93.3
Q ss_pred CCCccccchHHHHHHHHHHh---cCC---------CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCC
Q 003203 32 QGYKSFESRKSILCDILDWL---TSP---------NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTAN 99 (839)
Q Consensus 32 ~~~~~fvgR~~~~~~l~~~l---~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 99 (839)
.....+.|.+...+++.+.+ ... -.+-|.|+|++|+|||++|+.++...... | +.++..
T Consensus 149 ~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~--f-----~~is~~-- 219 (644)
T PRK10733 149 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--F-----FTISGS-- 219 (644)
T ss_pred CcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC--E-----EEEehH--
Confidence 33455667665555554443 211 12358999999999999999998776432 2 222221
Q ss_pred HHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc----------------cccccccCCC--CC
Q 003203 100 VKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID----------------LVTVGIPFGN--AH 161 (839)
Q Consensus 100 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~----------------~~~l~~~l~~--~~ 161 (839)
++.. +. .+ ........++.......+.+|++|+++.... +..+...+.. ..
T Consensus 220 --~~~~-~~--~g------~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~ 288 (644)
T PRK10733 220 --DFVE-MF--VG------VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 288 (644)
T ss_pred --HhHH-hh--hc------ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC
Confidence 1110 00 00 1112223334444445788999999875310 1111111111 12
Q ss_pred CCceEEEEeCchhhhhhhc----CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCc
Q 003203 162 RGCKILLASRYRDILVSEM----HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGL 227 (839)
Q Consensus 162 ~~s~iivTtr~~~~~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~ 227 (839)
.+..+|.||...+...... .....+.++.-+.++-.++++.+.......++.. ...+++.+.|.
T Consensus 289 ~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d--~~~la~~t~G~ 356 (644)
T PRK10733 289 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID--AAIIARGTPGF 356 (644)
T ss_pred CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCC--HHHHHhhCCCC
Confidence 3455666777666432111 2246788888888888899988885433222211 33566666664
No 240
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.02 E-value=0.0044 Score=72.02 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=37.6
Q ss_pred ccccchHHHHHHHHHHhcC--------C-CeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 35 KSFESRKSILCDILDWLTS--------P-NVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~~--------~-~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
..++|.++.++.|.+.+.. + ....+.++|++|+|||++|+.++...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999988888761 1 13478999999999999999998877
No 241
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.01 E-value=0.0045 Score=59.55 Aligned_cols=86 Identities=22% Similarity=0.283 Sum_probs=53.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC-CHHHHHHHHHHHhhhhccC----CCchHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA-NVKRIQDEIADQLCLELCK----GTESERARTLFDRL 131 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~~l 131 (839)
+++.++|+.|+||||.+.+++.+...+ -..+..++..... ...+-++..++.++..... .+..+......+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 689999999999999999999888765 3457777765432 3445566777777765321 12333343344444
Q ss_pred HcCCcEEEEEeCC
Q 003203 132 WKENKILVILDDI 144 (839)
Q Consensus 132 ~~~~~~LlVlDdv 144 (839)
..++.=+|++|=.
T Consensus 80 ~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 80 RKKGYDLVLIDTA 92 (196)
T ss_dssp HHTTSSEEEEEE-
T ss_pred hhcCCCEEEEecC
Confidence 3333346777765
No 242
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.00 E-value=0.0017 Score=61.45 Aligned_cols=74 Identities=30% Similarity=0.386 Sum_probs=44.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCC
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKEN 135 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 135 (839)
..-+.|+|+.|+|||.||..+.+....+ -..+.|++ ..++...+-. ...... .....+.+. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~--g~~v~f~~------~~~L~~~l~~----~~~~~~----~~~~~~~l~--~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRK--GYSVLFIT------ASDLLDELKQ----SRSDGS----YEELLKRLK--R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEE------HHHHHHHHHC----CHCCTT----HCHHHHHHH--T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccC--CcceeEee------cCceeccccc----cccccc----hhhhcCccc--c
Confidence 4679999999999999999999987653 22356664 3344444432 211111 123445554 4
Q ss_pred cEEEEEeCCCCc
Q 003203 136 KILVILDDICTS 147 (839)
Q Consensus 136 ~~LlVlDdv~~~ 147 (839)
-=||||||+-..
T Consensus 109 ~dlLilDDlG~~ 120 (178)
T PF01695_consen 109 VDLLILDDLGYE 120 (178)
T ss_dssp SSCEEEETCTSS
T ss_pred ccEeccccccee
Confidence 457889999643
No 243
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.98 E-value=0.0031 Score=62.03 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=36.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQD 105 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 105 (839)
-+++.|+|++|+|||++|.+++...... ...++|++... +....+.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHH
Confidence 4799999999999999999998876533 46789998875 55555443
No 244
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.97 E-value=0.0088 Score=62.50 Aligned_cols=153 Identities=15% Similarity=0.110 Sum_probs=81.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhc---------------------cCCeEEEEEEecCCCHHHHHHHHHHHhhhhc
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQN---------------------LFDQVIFVLASSTANVKRIQDEIADQLCLEL 115 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~---------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 115 (839)
..+.++|+.|+||||+|..++...-... |-| .+++......... + ..
T Consensus 22 hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD-~~~~~p~~~~~~~----------g-~~ 89 (325)
T PRK08699 22 NAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPD-FYEITPLSDEPEN----------G-RK 89 (325)
T ss_pred eEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCC-EEEEecccccccc----------c-cc
Confidence 4688999999999999999988864211 111 2222111000000 0 00
Q ss_pred cCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccccCCCCCCCceEEEEeCchh-hhhhhcCccceEEc
Q 003203 116 CKGTESERARTLFDRLW----KENKILVILDDICTSI--DLVTVGIPFGNAHRGCKILLASRYRD-ILVSEMHSQYNYCV 188 (839)
Q Consensus 116 ~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTtr~~~-~~~~~~~~~~~~~l 188 (839)
...-..+.++.+.+.+. .+++-++|+|+++..+ ....+...+.....+..+|++|.+.. +..........+.+
T Consensus 90 ~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~ 169 (325)
T PRK08699 90 LLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVL 169 (325)
T ss_pred CCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcC
Confidence 00112344444444443 1344455668887542 22333333322224566777777654 44333444678999
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhH
Q 003203 189 SVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLA 230 (839)
Q Consensus 189 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 230 (839)
.+++.+++.+.+.+. +. .. . . ..+..++|-|+.
T Consensus 170 ~~~~~~~~~~~L~~~-~~---~~--~--~-~~l~~~~g~p~~ 202 (325)
T PRK08699 170 PAPSHEEALAYLRER-GV---AE--P--E-ERLAFHSGAPLF 202 (325)
T ss_pred CCCCHHHHHHHHHhc-CC---Cc--H--H-HHHHHhCCChhh
Confidence 999999999988764 21 11 1 1 123568898854
No 245
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.96 E-value=0.00028 Score=79.89 Aligned_cols=172 Identities=19% Similarity=0.185 Sum_probs=78.4
Q ss_pred CCCccEEEecccCCcch---HHHHHHhcccceEEeccc-cCchhhc--cccccCCCCCCCeeeeccCCCcceeecCCCcc
Q 003203 600 SDNTRALKLKLCSSIYL---DEILMQLKGIEHLYLDEV-PGIKNVL--YDLEREGFPQLKHLQVQNNPFILCITDSTAWV 673 (839)
Q Consensus 600 ~~~l~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 673 (839)
.+.++.+.+..|..... ......++.|+.|++.+| ....... .......+++|+.|+++.|..+. +.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is---d~~l~~ 263 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT---DIGLSA 263 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC---chhHHH
Confidence 45566666666555543 235555666666666552 2211111 01112334666666666655322 111111
Q ss_pred cccccccchhhhhcccccccccccccccccccCCCCEEEEecCCCcccccchhhhhcCCCccEEEEecc---cchHHHhh
Q 003203 674 CFDAFPLLESLVLHNLIHMEKICHSQLTAVSFCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKC---KNVEEIFM 750 (839)
Q Consensus 674 ~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c---~~L~~l~~ 750 (839)
....+|+|+.|.+.+|..+++-.... -...+++|++|++++|..+++........++++|+.|.+..+ +.++....
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~-i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l 342 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVS-IAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSL 342 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHH-HHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHH
Confidence 12235666666666565543321110 123455566666666666544322223344555555444333 33444322
Q ss_pred cccCCccccCCCccccc-cccceeeccccccccccc
Q 003203 751 MERDGYVDCKEVNKIEF-SQLRSLTLKFLPRLRSFY 785 (839)
Q Consensus 751 ~~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~L~~l~ 785 (839)
.... ... -.+..+.+.+|++++.+-
T Consensus 343 ~~~~----------~~~~d~~~~~~~~~~~~l~~~~ 368 (482)
T KOG1947|consen 343 SGLL----------TLTSDDLAELILRSCPKLTDLS 368 (482)
T ss_pred HHhh----------ccCchhHhHHHHhcCCCcchhh
Confidence 1110 011 156667777777776554
No 246
>PRK06921 hypothetical protein; Provisional
Probab=96.94 E-value=0.0025 Score=64.60 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=44.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcC
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKE 134 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 134 (839)
....+.++|..|+|||.||..+++....+. ...++|++. .++...+...+ +......+.+ .
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~~~--~ 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF------VEGFGDLKDDF----------DLLEAKLNRM--K 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH------HHHHHHHHHHH----------HHHHHHHHHh--c
Confidence 346789999999999999999999876431 234566653 22333332221 1111223333 2
Q ss_pred CcEEEEEeCCC
Q 003203 135 NKILVILDDIC 145 (839)
Q Consensus 135 ~~~LlVlDdv~ 145 (839)
+-=||||||+.
T Consensus 177 ~~dlLiIDDl~ 187 (266)
T PRK06921 177 KVEVLFIDDLF 187 (266)
T ss_pred CCCEEEEeccc
Confidence 45699999993
No 247
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.94 E-value=0.0039 Score=64.52 Aligned_cols=116 Identities=21% Similarity=0.264 Sum_probs=67.2
Q ss_pred chHHHHHHHHHHhcC----CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhh
Q 003203 39 SRKSILCDILDWLTS----PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLE 114 (839)
Q Consensus 39 gR~~~~~~l~~~l~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 114 (839)
+|....+...+++.+ ...+-+.|+|..|+|||.||..+++....+ .+ .+.++++ ..+..++.......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~-~v~~~~~------~~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-GV-SSTLLHF------PEFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CC-CEEEEEH------HHHHHHHHHHHhcC
Confidence 555555555666652 134678999999999999999999998743 22 3555543 34555554443211
Q ss_pred ccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc--ccccc--ccccC-CCC-CCCceEEEEeCc
Q 003203 115 LCKGTESERARTLFDRLWKENKILVILDDICTS--IDLVT--VGIPF-GNA-HRGCKILLASRY 172 (839)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~--~~~~~--l~~~l-~~~-~~~s~iivTtr~ 172 (839)
. .....+.+ .+-=||||||+... ..|.. +...+ ... ..+-.+|+||.-
T Consensus 207 ----~----~~~~l~~l--~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 207 ----S----VKEKIDAV--KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred ----c----HHHHHHHh--cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 12334444 25668999999643 33432 22222 111 234557777763
No 248
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.93 E-value=0.0005 Score=66.47 Aligned_cols=114 Identities=23% Similarity=0.215 Sum_probs=61.4
Q ss_pred CCCCCcEEEccCCCcCCCcccCCCCCCCEEEccCC--CCC-CCchhhcCCCccCeEecCCCcC--CCccCchhhcCcccc
Q 003203 452 LLSNLQTLCLDQCVVGDISIIGNLKKLEILSLVDS--DIE-RLPNEIGQLTQLRCLDLSFCRN--LKVIPPNVISKLTQL 526 (839)
Q Consensus 452 ~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~--~l~-~lp~~i~~l~~L~~L~l~~~~~--l~~~p~~~l~~l~~L 526 (839)
.+..|+.|.+.++.++....+-.|++|++|.++.| ++. .++-...++++|++|++++|.. ++.+++ +..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENL 118 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcch
Confidence 34455555555555555555556666666666666 333 3444444556677777766641 223333 4566666
Q ss_pred CeEEccCCccccccccccccccccchhhhccCCCCCEEEEEeccccCCC
Q 003203 527 EELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILP 575 (839)
Q Consensus 527 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~ 575 (839)
..|++.+|.... .....-..+.-+++|++|+-........|
T Consensus 119 ~~Ldl~n~~~~~--------l~dyre~vf~ll~~L~~LD~~dv~~~Ea~ 159 (260)
T KOG2739|consen 119 KSLDLFNCSVTN--------LDDYREKVFLLLPSLKYLDGCDVDGEEAP 159 (260)
T ss_pred hhhhcccCCccc--------cccHHHHHHHHhhhhccccccccCCcccc
Confidence 777777666431 11122233455667777665554444443
No 249
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.93 E-value=0.00014 Score=62.59 Aligned_cols=89 Identities=20% Similarity=0.213 Sum_probs=51.0
Q ss_pred cCCCCccEEEeCCCcccccCccccC-CCCCcEEEccCCCcCC-CcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEe
Q 003203 428 TGMSKLRGLALSEMQLLSLPPSVHL-LSNLQTLCLDQCVVGD-ISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLD 505 (839)
Q Consensus 428 ~~l~~L~~L~l~~~~~~~lp~~~~~-l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 505 (839)
.+..+|...+|++|.+.++|+.+.. .+.+.+|++.+|.+.+ |..+..++.|+.|+++.|.+...|..+..|.+|-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 4455666666666666666665543 3356666666665555 4445556666666666666665565555555555555
Q ss_pred cCCCcCCCccCc
Q 003203 506 LSFCRNLKVIPP 517 (839)
Q Consensus 506 l~~~~~l~~~p~ 517 (839)
..++. ...+|-
T Consensus 130 s~~na-~~eid~ 140 (177)
T KOG4579|consen 130 SPENA-RAEIDV 140 (177)
T ss_pred CCCCc-cccCcH
Confidence 55543 344443
No 250
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.93 E-value=0.0008 Score=59.56 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
+|+|.|++|+||||+|++++++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999998773
No 251
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.90 E-value=0.053 Score=57.59 Aligned_cols=44 Identities=25% Similarity=0.406 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHhcC---CCeeEEEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 40 RKSILCDILDWLTS---PNVNMIGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 40 R~~~~~~l~~~l~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
|+.-.+.|.+.+.+ +...+|+|.|.=|+||||+.+.+.+.++..
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34556677777764 456799999999999999999999998765
No 252
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.037 Score=58.33 Aligned_cols=153 Identities=14% Similarity=0.125 Sum_probs=85.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCc
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENK 136 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (839)
|--.++||+|.|||+++.++++.+. |+. +=+.++...+-.+ ++.++.. ...+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydI-ydLeLt~v~~n~d-Lr~LL~~----------------------t~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDI-YDLELTEVKLDSD-LRHLLLA----------------------TPNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----Cce-EEeeeccccCcHH-HHHHHHh----------------------CCCC
Confidence 5578999999999999999998875 542 2233333222222 2222211 2466
Q ss_pred EEEEEeCCCCccc-----------cc---------cccccCC----CCCCCceEEEEeCchhhhh-hhcC---ccceEEc
Q 003203 137 ILVILDDICTSID-----------LV---------TVGIPFG----NAHRGCKILLASRYRDILV-SEMH---SQYNYCV 188 (839)
Q Consensus 137 ~LlVlDdv~~~~~-----------~~---------~l~~~l~----~~~~~s~iivTtr~~~~~~-~~~~---~~~~~~l 188 (839)
-+||+.|++..-+ .+ -+...+. .++..--||+||...+-+. +.+. .+..+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 6777777763211 00 0111111 1222223555777665431 1122 2456778
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHHHHh-cCC
Q 003203 189 SVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVARAL-RNK 241 (839)
Q Consensus 189 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L-~~~ 241 (839)
.--+.+.-..|+..+.+-..+ ..+..+|.+...|.-+.=..+|..| +.+
T Consensus 368 gyCtf~~fK~La~nYL~~~~~----h~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEED----HRLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCCC----cchhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 888999999999999865432 3345666666666655545555544 444
No 253
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.02 Score=63.76 Aligned_cols=169 Identities=17% Similarity=0.279 Sum_probs=95.9
Q ss_pred ccccchHHHHHHHHHHhcC---------CC---eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHH
Q 003203 35 KSFESRKSILCDILDWLTS---------PN---VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKR 102 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~~---------~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 102 (839)
.++=|-++..++|.+-+.- .+ -.=|.++|++|.|||-+|++|+....-. |++|..+ +
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-------FlSVKGP----E 740 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-------FLSVKGP----E 740 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-------EEeecCH----H
Confidence 4456778888888887751 22 2357899999999999999999877532 5555432 1
Q ss_pred HHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc---------------cccccccc---CCC-CCCC
Q 003203 103 IQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI---------------DLVTVGIP---FGN-AHRG 163 (839)
Q Consensus 103 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~---------------~~~~l~~~---l~~-~~~~ 163 (839)
+++. .....++.++.++++.+.-+++.|++|.++... .+.++... +.+ ...+
T Consensus 741 LLNM---------YVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~ 811 (953)
T KOG0736|consen 741 LLNM---------YVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQD 811 (953)
T ss_pred HHHH---------HhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCc
Confidence 2111 112234556777777777799999999987531 01111111 112 2344
Q ss_pred ceEEEEeCchhhhh-hhcCc---cceEEccCCCHHHHHH-HHHHHhCCCCCCcchHHHHHHHHHHhC
Q 003203 164 CKILLASRYRDILV-SEMHS---QYNYCVSVLNKEEAWS-LFKKMVGDYVEDSDLESIAIQVANECG 225 (839)
Q Consensus 164 s~iivTtr~~~~~~-~~~~~---~~~~~l~~L~~~ea~~-Lf~~~~~~~~~~~~~~~~~~~I~~~~~ 225 (839)
.=||-+|..++... +.+.+ ++...+++=+++|+.. .++....+..-+++.. ..+|+++|.
T Consensus 812 VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVd--L~eiAk~cp 876 (953)
T KOG0736|consen 812 VFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVD--LVEIAKKCP 876 (953)
T ss_pred eEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcC--HHHHHhhCC
Confidence 44665666565432 12222 4566677766655544 3433332222222211 457777775
No 254
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.84 E-value=0.0091 Score=59.36 Aligned_cols=89 Identities=20% Similarity=0.267 Sum_probs=52.6
Q ss_pred HHHHHHHHhcC--CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCc
Q 003203 43 ILCDILDWLTS--PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTE 120 (839)
Q Consensus 43 ~~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 120 (839)
.+..+.+...+ .+...+.++|.+|+|||+||..+++....+ -..+++++ ..++...+-.... ....
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~--~~~~-- 151 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFS--NSET-- 151 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHh--hccc--
Confidence 44444544432 223578999999999999999999998654 23455653 3444444443331 1111
Q ss_pred hHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 003203 121 SERARTLFDRLWKENKILVILDDICTS 147 (839)
Q Consensus 121 ~~~~~~~~~~l~~~~~~LlVlDdv~~~ 147 (839)
....+.+.+. +.=+||+||+...
T Consensus 152 --~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 152 --SEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred --cHHHHHHHhc--cCCEEEEeCCCCC
Confidence 1123444453 4458888999643
No 255
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0091 Score=67.28 Aligned_cols=173 Identities=17% Similarity=0.224 Sum_probs=95.1
Q ss_pred CccccchHHHHHHHHHHhc------C-------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCH
Q 003203 34 YKSFESRKSILCDILDWLT------S-------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANV 100 (839)
Q Consensus 34 ~~~fvgR~~~~~~l~~~l~------~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 100 (839)
...+.|-+...+.+.+.+. + ...+.+.++|++|.|||.||+++++..... | +.+...
T Consensus 241 ~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~--f-----i~v~~~--- 310 (494)
T COG0464 241 LDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSR--F-----ISVKGS--- 310 (494)
T ss_pred eehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCe--E-----EEeeCH---
Confidence 3445555555544444443 1 234588999999999999999999865422 3 333221
Q ss_pred HHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc-------------cccccccCC--CCCCCce
Q 003203 101 KRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID-------------LVTVGIPFG--NAHRGCK 165 (839)
Q Consensus 101 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~-------------~~~l~~~l~--~~~~~s~ 165 (839)
++ .... .......+..++....+..+..|++|+++.... ...+...+. ....+..
T Consensus 311 -~l----~sk~-----vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~ 380 (494)
T COG0464 311 -EL----LSKW-----VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVL 380 (494)
T ss_pred -HH----hccc-----cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceE
Confidence 11 1100 011122334455555456899999999975321 112222222 1223344
Q ss_pred EEEEeCchhhhhhh-c---CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCC
Q 003203 166 ILLASRYRDILVSE-M---HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGG 226 (839)
Q Consensus 166 iivTtr~~~~~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G 226 (839)
||-||..++..... . .-...+.+++-+.++..+.|+.+..+...........+.+++...|
T Consensus 381 vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 381 VIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred EEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcC
Confidence 55555555443211 1 2256888999999999999999996433221111224455655555
No 256
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.81 E-value=0.039 Score=56.75 Aligned_cols=162 Identities=10% Similarity=0.051 Sum_probs=95.1
Q ss_pred HHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHHHH--------hccCCeEEEEEE-ecCCCHHHHHHHHHHHhhh
Q 003203 44 LCDILDWLTSPNV-NMIGVYGIGGVGKTALMHEVLFEAKK--------QNLFDQVIFVLA-SSTANVKRIQDEIADQLCL 113 (839)
Q Consensus 44 ~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~--------~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~ 113 (839)
++.+.+.+..++. .+..++|..|+||+++|..+.+..-. ..+-+.+.++.. +......+
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~----------- 73 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSE----------- 73 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHH-----------
Confidence 4556666666554 46669999999999999999988721 112222333321 11122222
Q ss_pred hccCCCchHHHHHHHHHHH-----cCCcEEEEEeCCCCcc--ccccccccCCCCCCCceEEEEeCc-hhhhhhhcCccce
Q 003203 114 ELCKGTESERARTLFDRLW-----KENKILVILDDICTSI--DLVTVGIPFGNAHRGCKILLASRY-RDILVSEMHSQYN 185 (839)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~-----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTtr~-~~~~~~~~~~~~~ 185 (839)
+..+.+.+. .+.+-++|+||++... ...++...+..-.+++.+|++|.+ ..+..+.......
T Consensus 74 ----------Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~ 143 (299)
T PRK07132 74 ----------FLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQV 143 (299)
T ss_pred ----------HHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEE
Confidence 222222221 2477788899987653 344555555555566777765544 4444433455788
Q ss_pred EEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHH
Q 003203 186 YCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVI 233 (839)
Q Consensus 186 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 233 (839)
+++.++++++..+.+... + .+ ++.+..++...+|.-.|+..
T Consensus 144 ~~f~~l~~~~l~~~l~~~-~---~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 144 FNVKEPDQQKILAKLLSK-N---KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred EECCCCCHHHHHHHHHHc-C---CC---hhHHHHHHHHcCCHHHHHHH
Confidence 999999999999888764 2 11 23355666667763344444
No 257
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0077 Score=59.91 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=25.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
.|+|.++||+|.|||+|++++++++.++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 4799999999999999999999998764
No 258
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.78 E-value=0.0068 Score=63.90 Aligned_cols=88 Identities=17% Similarity=0.158 Sum_probs=51.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC-CCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcC
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST-ANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKE 134 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 134 (839)
..+++++|+.|+||||++.+++.....+.....+..++.... ....+-++...+.++..................+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-- 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-- 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc--
Confidence 469999999999999999999988754322234566654332 22334445555555544332222222333344442
Q ss_pred CcEEEEEeCCC
Q 003203 135 NKILVILDDIC 145 (839)
Q Consensus 135 ~~~LlVlDdv~ 145 (839)
++-++++|..-
T Consensus 215 ~~DlVLIDTaG 225 (374)
T PRK14722 215 NKHMVLIDTIG 225 (374)
T ss_pred CCCEEEEcCCC
Confidence 44566789874
No 259
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.78 E-value=0.0085 Score=60.25 Aligned_cols=75 Identities=24% Similarity=0.245 Sum_probs=47.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcC
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKE 134 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 134 (839)
+..-+.++|.+|+|||.||.++.++.. +.. -.+.+++ ..++..++...... .. ....+.+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g-~sv~f~~------~~el~~~Lk~~~~~----~~---~~~~l~~~l~-- 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAG-ISVLFIT------APDLLSKLKAAFDE----GR---LEEKLLRELK-- 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcC-CeEEEEE------HHHHHHHHHHHHhc----Cc---hHHHHHHHhh--
Confidence 556889999999999999999999998 422 2455553 44455555544332 11 1112333332
Q ss_pred CcEEEEEeCCCC
Q 003203 135 NKILVILDDICT 146 (839)
Q Consensus 135 ~~~LlVlDdv~~ 146 (839)
+-=||||||+-.
T Consensus 167 ~~dlLIiDDlG~ 178 (254)
T COG1484 167 KVDLLIIDDIGY 178 (254)
T ss_pred cCCEEEEecccC
Confidence 445899999864
No 260
>PRK06696 uridine kinase; Validated
Probab=96.77 E-value=0.0022 Score=63.68 Aligned_cols=44 Identities=27% Similarity=0.377 Sum_probs=37.2
Q ss_pred chHHHHHHHHHHhc---CCCeeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 39 SRKSILCDILDWLT---SPNVNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 39 gR~~~~~~l~~~l~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
.|.+.+++|.+.+. .++..+|+|.|.+|+||||+|+++...+..
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47778888888875 455679999999999999999999998864
No 261
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.037 Score=52.93 Aligned_cols=169 Identities=18% Similarity=0.230 Sum_probs=94.6
Q ss_pred ccchHHHHHHHHHHhc-------------CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHH
Q 003203 37 FESRKSILCDILDWLT-------------SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRI 103 (839)
Q Consensus 37 fvgR~~~~~~l~~~l~-------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 103 (839)
+-|-++.+++|.+.+. =.+.+-+.++|++|.|||-||+.++++-. ..|+.+|... -+
T Consensus 149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~-------c~firvsgse---lv 218 (404)
T KOG0728|consen 149 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGSE---LV 218 (404)
T ss_pred hccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc-------eEEEEechHH---HH
Confidence 3344677777776664 12456788999999999999999987543 4567776532 22
Q ss_pred HHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc----------------cccccccCCC--CCCCce
Q 003203 104 QDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID----------------LVTVGIPFGN--AHRGCK 165 (839)
Q Consensus 104 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~----------------~~~l~~~l~~--~~~~s~ 165 (839)
++-|-+ . ....++++--....-+-.|+.|.++.... .-.+...+.. ..++-+
T Consensus 219 qk~ige----g------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknik 288 (404)
T KOG0728|consen 219 QKYIGE----G------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIK 288 (404)
T ss_pred HHHhhh----h------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceE
Confidence 221111 0 11222333333345778888898875310 0011112221 235678
Q ss_pred EEEEeCchhhhhhh-c---CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCc
Q 003203 166 ILLASRYRDILVSE-M---HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGL 227 (839)
Q Consensus 166 iivTtr~~~~~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~ 227 (839)
||++|..-+++..+ . ..+..++.++-+++.-.++++-+....+...... .++|+++..|.
T Consensus 289 vimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~--l~kiaekm~ga 352 (404)
T KOG0728|consen 289 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGIN--LRKIAEKMPGA 352 (404)
T ss_pred EEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccC--HHHHHHhCCCC
Confidence 99888776654211 1 2246788888888777788876663322211111 34555555443
No 262
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.76 E-value=0.0047 Score=73.62 Aligned_cols=106 Identities=17% Similarity=0.145 Sum_probs=60.0
Q ss_pred ccccchHHHHHHHHHHhcC-------CC--eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHH
Q 003203 35 KSFESRKSILCDILDWLTS-------PN--VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQD 105 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~~-------~~--~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 105 (839)
..++|.+..++.+.+.+.. .+ ...+.++|+.|+|||+||+.+++.+-.. -...+-++.+.-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccH--
Confidence 5688999999999888751 11 2356799999999999999999876321 123444554432221111
Q ss_pred HHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 003203 106 EIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS 147 (839)
Q Consensus 106 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~ 147 (839)
...+|.... -...+....+...+.....-++++|+++..
T Consensus 585 --~~l~g~~~g-yvg~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 585 --SKLIGSPPG-YVGYNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred --HHhcCCCCc-ccCcCccchHHHHHHhCCCeEEEECChhhC
Confidence 111221100 000011112334444334468899999854
No 263
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.76 E-value=0.0057 Score=63.04 Aligned_cols=84 Identities=19% Similarity=0.241 Sum_probs=52.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhc------cCCCchHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLEL------CKGTESERARTLFD 129 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~~~~ 129 (839)
-+++.|+|++|+||||||.+++...... -..++|++..+.++.. .+++++.+. .+....+....+..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~ 127 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAET 127 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4799999999999999999988876543 3457888777655543 234443321 12222233333322
Q ss_pred HHHcCCcEEEEEeCCCC
Q 003203 130 RLWKENKILVILDDICT 146 (839)
Q Consensus 130 ~l~~~~~~LlVlDdv~~ 146 (839)
....+..-+||+|.|..
T Consensus 128 li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 128 LVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HhhccCCcEEEEcchhh
Confidence 23345677999999853
No 264
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.75 E-value=0.0041 Score=62.51 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=35.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhcc----CCeEEEEEEecCCCHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNL----FDQVIFVLASSTANVKRI 103 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~ 103 (839)
-.++.|+|++|+|||++|.+++........ ...++|++....++..++
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH
Confidence 368999999999999999999865432221 256899988776665544
No 265
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.74 E-value=0.0065 Score=61.64 Aligned_cols=138 Identities=17% Similarity=0.235 Sum_probs=76.4
Q ss_pred cccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHH-HHHHhccCCeEE-E---EEEecCC---------CHH
Q 003203 36 SFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLF-EAKKQNLFDQVI-F---VLASSTA---------NVK 101 (839)
Q Consensus 36 ~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~-~~~~~~~f~~~~-w---v~~~~~~---------~~~ 101 (839)
++-+|..+-.--+++|.++++..|.+.|.+|.|||-||-++.- +.-.+..|..++ . +.+++.- .+.
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~ 304 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMG 304 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhcc
Confidence 3555666767778888999999999999999999988866432 233344455433 2 2222221 122
Q ss_pred HHHHHHHHHhhhhccCC-CchHHHHHHHHH-HH--------cC---CcEEEEEeCCCCccccccccccCCCCCCCceEEE
Q 003203 102 RIQDEIADQLCLELCKG-TESERARTLFDR-LW--------KE---NKILVILDDICTSIDLVTVGIPFGNAHRGCKILL 168 (839)
Q Consensus 102 ~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~-l~--------~~---~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iiv 168 (839)
-..+.|.+-+..-.... ...+.+..+..+ .. .| .+.+||+|.+.+... ..+...+...+.|+||+.
T Consensus 305 PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp-heikTiltR~G~GsKIVl 383 (436)
T COG1875 305 PWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP-HELKTILTRAGEGSKIVL 383 (436)
T ss_pred chHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH-HHHHHHHHhccCCCEEEE
Confidence 23444444332211111 112222222111 00 12 567999999987642 122233445788999998
Q ss_pred EeCchh
Q 003203 169 ASRYRD 174 (839)
Q Consensus 169 Ttr~~~ 174 (839)
|---.+
T Consensus 384 ~gd~aQ 389 (436)
T COG1875 384 TGDPAQ 389 (436)
T ss_pred cCCHHH
Confidence 876544
No 266
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.72 E-value=0.00073 Score=65.34 Aligned_cols=60 Identities=25% Similarity=0.363 Sum_probs=27.8
Q ss_pred CCCCccEEEeCCC--ccc-ccCccccCCCCCcEEEccCCCcCC---CcccCCCCCCCEEEccCCCC
Q 003203 429 GMSKLRGLALSEM--QLL-SLPPSVHLLSNLQTLCLDQCVVGD---ISIIGNLKKLEILSLVDSDI 488 (839)
Q Consensus 429 ~l~~L~~L~l~~~--~~~-~lp~~~~~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~l 488 (839)
.+++|+.|.++.| ++. .++....++++|++|++++|++.. +..+..+.+|..|++.+|..
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence 3455555555555 332 333333444555555555554443 23333444444444444433
No 267
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.70 E-value=0.0091 Score=61.34 Aligned_cols=87 Identities=20% Similarity=0.249 Sum_probs=47.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC-CHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcC
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA-NVKRIQDEIADQLCLELCKGTESERARTLFDRLWKE 134 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 134 (839)
.++++|+|+.|+||||++..++.....+..-..+..++..... ...+.+..-.+.++................+.+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~-- 271 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR-- 271 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc--
Confidence 4699999999999999999999887644111245566554321 1122222223333333222222333334444442
Q ss_pred CcEEEEEeCC
Q 003203 135 NKILVILDDI 144 (839)
Q Consensus 135 ~~~LlVlDdv 144 (839)
..=+|++|..
T Consensus 272 ~~d~vliDt~ 281 (282)
T TIGR03499 272 DKDLILIDTA 281 (282)
T ss_pred CCCEEEEeCC
Confidence 3457777753
No 268
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.69 E-value=0.011 Score=59.12 Aligned_cols=89 Identities=20% Similarity=0.325 Sum_probs=55.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCC-eEEEEEEecCC-CHHHHHHHHHHHhhh-------hccCCCchH----
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFD-QVIFVLASSTA-NVKRIQDEIADQLCL-------ELCKGTESE---- 122 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~---- 122 (839)
-+.++|+|.+|+||||||+++++..+.+ |+ .++++-+++.. .+.++.+++...=.. ...++....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~--~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKA--HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3678999999999999999999998754 44 45666665543 455666655432111 011111111
Q ss_pred --HHHHHHHHHH-c-CCcEEEEEeCCCC
Q 003203 123 --RARTLFDRLW-K-ENKILVILDDICT 146 (839)
Q Consensus 123 --~~~~~~~~l~-~-~~~~LlVlDdv~~ 146 (839)
....+-+++. + ++++|+++||+-.
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1223334443 3 7999999999854
No 269
>PRK04296 thymidine kinase; Provisional
Probab=96.69 E-value=0.0024 Score=61.42 Aligned_cols=110 Identities=11% Similarity=0.120 Sum_probs=61.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccC---CCchHHHHHHHHHHHc
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCK---GTESERARTLFDRLWK 133 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~l~~ 133 (839)
.++.|+|+.|.||||+|..++.+.... ...++.+. +.++.+.....+++.++..... ....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 478899999999999999999888644 23344332 2112222233455555533221 112222222222 23
Q ss_pred CCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCchh
Q 003203 134 ENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRYRD 174 (839)
Q Consensus 134 ~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~~ 174 (839)
++.-+||+|.+.-. ++...+...+ ...|..||+|.++..
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 35568999999643 2232222221 346788999999854
No 270
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.65 E-value=0.0058 Score=56.12 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=23.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
-.++.|+|++|.||||+.+.+|...+.
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 368999999999999999999987653
No 271
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.64 E-value=0.0073 Score=62.32 Aligned_cols=83 Identities=27% Similarity=0.334 Sum_probs=52.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhcc-----CCCchHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELC-----KGTESERARTLFDR 130 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~ 130 (839)
-+++-|+|++|+||||||.+++...... -..++|++..+.++.. .++.++.+.+ .....+.+..+...
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 4689999999999999999988776543 4568899887766643 2333332211 11222333333333
Q ss_pred H-HcCCcEEEEEeCCC
Q 003203 131 L-WKENKILVILDDIC 145 (839)
Q Consensus 131 l-~~~~~~LlVlDdv~ 145 (839)
+ ..+..-+||+|.|-
T Consensus 128 li~s~~~~lIVIDSva 143 (325)
T cd00983 128 LVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHhccCCCEEEEcchH
Confidence 3 34566799999975
No 272
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.63 E-value=0.0089 Score=62.37 Aligned_cols=36 Identities=31% Similarity=0.308 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEE
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLA 94 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 94 (839)
..+.++|+.|+|||.||..+++....+ -..++|+++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~--g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR--GKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEEH
Confidence 779999999999999999999988654 235666643
No 273
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.62 E-value=0.011 Score=55.40 Aligned_cols=39 Identities=26% Similarity=0.389 Sum_probs=30.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA 98 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 98 (839)
++.|+|++|+||||+|..++.....+ -..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEECCcch
Confidence 36899999999999999999887642 3457777766543
No 274
>PRK09354 recA recombinase A; Provisional
Probab=96.61 E-value=0.0087 Score=62.27 Aligned_cols=84 Identities=23% Similarity=0.317 Sum_probs=54.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhcc-----CCCchHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELC-----KGTESERARTLFDR 130 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~ 130 (839)
-+++-|+|++|+||||||.+++...... -..++|++....++.. .++.++.+.+ .....+..-.+...
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4689999999999999999998776543 4568899887776653 3344433211 11222333333333
Q ss_pred H-HcCCcEEEEEeCCCC
Q 003203 131 L-WKENKILVILDDICT 146 (839)
Q Consensus 131 l-~~~~~~LlVlDdv~~ 146 (839)
+ ..+..-+||+|.|-.
T Consensus 133 li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 133 LVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HhhcCCCCEEEEeChhh
Confidence 3 345667999999853
No 275
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.61 E-value=0.014 Score=63.54 Aligned_cols=88 Identities=20% Similarity=0.259 Sum_probs=49.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC-CHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcC
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA-NVKRIQDEIADQLCLELCKGTESERARTLFDRLWKE 134 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 134 (839)
..+++|+|++|+||||++.+++.....+.....+..++..... ...+.++...+.++...............++.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~-- 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR-- 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc--
Confidence 4799999999999999999998876644222345555543211 1122222223333332222222333444444442
Q ss_pred CcEEEEEeCCC
Q 003203 135 NKILVILDDIC 145 (839)
Q Consensus 135 ~~~LlVlDdv~ 145 (839)
..-+||+|..-
T Consensus 428 ~~DLVLIDTaG 438 (559)
T PRK12727 428 DYKLVLIDTAG 438 (559)
T ss_pred cCCEEEecCCC
Confidence 45688888874
No 276
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.57 E-value=0.0061 Score=58.02 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=28.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEE
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFV 92 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv 92 (839)
..+|.+.|+.|+||||+|+.++...... +..++++
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~ 41 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYL 41 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 4689999999999999999999998743 5555555
No 277
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.56 E-value=0.0034 Score=55.94 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHhccCCe
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAKKQNLFDQ 88 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~ 88 (839)
-|+|.|++|+||||+++.+++.++.+. |..
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g-~kv 36 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKG-YKV 36 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcC-cee
Confidence 588999999999999999999998753 543
No 278
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.55 E-value=0.015 Score=58.04 Aligned_cols=49 Identities=22% Similarity=0.338 Sum_probs=36.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhc----cCCeEEEEEEecCCCHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQN----LFDQVIFVLASSTANVKRIQ 104 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~ 104 (839)
-.++.|+|++|+|||++|.+++....... .-..++|+.....++...+.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 46999999999999999999987654321 01467898887766665543
No 279
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.54 E-value=0.00014 Score=70.26 Aligned_cols=98 Identities=20% Similarity=0.181 Sum_probs=48.1
Q ss_pred CccEEEeCCCcccccCccccCCCCCcEEEccCCCcCCCcccCCCCCCCEEEccCCCCCCCch--hhcCCCccCeEecCCC
Q 003203 432 KLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGDISIIGNLKKLEILSLVDSDIERLPN--EIGQLTQLRCLDLSFC 509 (839)
Q Consensus 432 ~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~ 509 (839)
+.+.|++-+|++.++. ...+++.|++|.|+-|.|+.+..+..|++|+.|.|+.|.|..+-+ .+.++++|+.|-|..|
T Consensus 20 ~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 3444444444444331 123444555555555555555555555555555555555554422 3455666666666555
Q ss_pred cCCCccCc----hhhcCccccCeEE
Q 003203 510 RNLKVIPP----NVISKLTQLEELY 530 (839)
Q Consensus 510 ~~l~~~p~----~~l~~l~~L~~L~ 530 (839)
...+.-+. .++.-|++|+.|+
T Consensus 99 PCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 99 PCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CcccccchhHHHHHHHHcccchhcc
Confidence 54444332 1234455555554
No 280
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.52 E-value=0.016 Score=57.77 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=26.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 54 PNVNMIGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 54 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
++..+++|.|+.|+|||||++.+....+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 556799999999999999999999888754
No 281
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.52 E-value=0.028 Score=58.94 Aligned_cols=39 Identities=26% Similarity=0.447 Sum_probs=29.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEe
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLAS 95 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 95 (839)
+.++|+|+|++|+||||++..++.....++ ..+..++..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~G--kkVglI~aD 278 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTD 278 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcC--CcEEEEecC
Confidence 347999999999999999999998876432 234555543
No 282
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.0062 Score=69.36 Aligned_cols=130 Identities=15% Similarity=0.111 Sum_probs=73.3
Q ss_pred ccccchHHHHHHHHHHhc---------CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHH
Q 003203 35 KSFESRKSILCDILDWLT---------SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQD 105 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~---------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 105 (839)
..++|.+..++.+.+.+. +....+....||.|+|||.||++++..+-.. -+..+-+++|+-- -+ .
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~--e~aliR~DMSEy~-Ek---H 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD--EQALIRIDMSEYM-EK---H 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC--CccceeechHHHH-HH---H
Confidence 568999999999999886 1234578889999999999999999877311 1445556555421 11 1
Q ss_pred HHHHHhhhhccCCCchHHHHHHHHHHHcCCcE-EEEEeCCCCc--cccccccccCCCC----C-------CCceEEEEeC
Q 003203 106 EIADQLCLELCKGTESERARTLFDRLWKENKI-LVILDDICTS--IDLVTVGIPFGNA----H-------RGCKILLASR 171 (839)
Q Consensus 106 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-LlVlDdv~~~--~~~~~l~~~l~~~----~-------~~s~iivTtr 171 (839)
.+.+-+|....=-.- +..-.+-+... .++| +|.||++... +..+-+...|.++ + .++-||+||.
T Consensus 565 sVSrLIGaPPGYVGy-eeGG~LTEaVR-r~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN 642 (786)
T COG0542 565 SVSRLIGAPPGYVGY-EEGGQLTEAVR-RKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSN 642 (786)
T ss_pred HHHHHhCCCCCCcee-ccccchhHhhh-cCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecc
Confidence 222222221100000 00112223333 4666 7778999754 4444444444331 1 3455667776
Q ss_pred c
Q 003203 172 Y 172 (839)
Q Consensus 172 ~ 172 (839)
-
T Consensus 643 ~ 643 (786)
T COG0542 643 A 643 (786)
T ss_pred c
Confidence 3
No 283
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.40 E-value=0.022 Score=57.63 Aligned_cols=126 Identities=14% Similarity=0.120 Sum_probs=68.3
Q ss_pred HHHHHHhc-CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEE---EecCCCHHHHHHHHH--HH--hhhhcc
Q 003203 45 CDILDWLT-SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVL---ASSTANVKRIQDEIA--DQ--LCLELC 116 (839)
Q Consensus 45 ~~l~~~l~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~~i~--~~--l~~~~~ 116 (839)
+.++..+. ..+...++|+|+.|.||||+++.++..... ....+++. +.......++...+. .+ ++...+
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~---~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~ 175 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILST---GISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTD 175 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCC---CCceEEECCEEeecchhHHHHHHHhccccccccccccc
Confidence 33444443 444578999999999999999999877642 23344432 211111222221110 00 011111
Q ss_pred CCCchHHHHHHHHHHHcCCcEEEEEeCCCCccccccccccCCCCCCCceEEEEeCchhhh
Q 003203 117 KGTESERARTLFDRLWKENKILVILDDICTSIDLVTVGIPFGNAHRGCKILLASRYRDIL 176 (839)
Q Consensus 117 ~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~~~ 176 (839)
..+.......+...+....+-++++|.+-..+.+..+...+ ..|..||+||.+..+.
T Consensus 176 v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 176 VLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDVE 232 (270)
T ss_pred ccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHHH
Confidence 11111112234444444578899999997766555554443 2477899999876653
No 284
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.40 E-value=0.0045 Score=66.75 Aligned_cols=50 Identities=18% Similarity=0.188 Sum_probs=41.6
Q ss_pred ccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccC
Q 003203 35 KSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLF 86 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f 86 (839)
..|+||++.++.+...+..+ .-|.|.|++|+|||++|+.+.........|
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F 69 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAF 69 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcc
Confidence 46999999999999998866 467899999999999999999876543334
No 285
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.38 E-value=0.015 Score=57.87 Aligned_cols=45 Identities=27% Similarity=0.400 Sum_probs=35.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRI 103 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 103 (839)
-.++.|+|++|+|||++|.+++...... ...++|++.. .++...+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHH
Confidence 3699999999999999999999877543 4568898877 4554443
No 286
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.011 Score=58.62 Aligned_cols=101 Identities=21% Similarity=0.242 Sum_probs=61.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCC
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKEN 135 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 135 (839)
...++|||++|.|||-+|+.|+....+. ++.++.. +|.+. ........++++++...+..
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~n-------fl~v~ss--------~lv~k-----yiGEsaRlIRemf~yA~~~~ 225 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVN-------FLKVVSS--------ALVDK-----YIGESARLIRDMFRYAREVI 225 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCc-------eEEeeHh--------hhhhh-----hcccHHHHHHHHHHHHhhhC
Confidence 3578999999999999999999887654 2333321 11111 11223345556666665567
Q ss_pred cEEEEEeCCCCcc-------------ccccccc---cCC--CCCCCceEEEEeCchhhh
Q 003203 136 KILVILDDICTSI-------------DLVTVGI---PFG--NAHRGCKILLASRYRDIL 176 (839)
Q Consensus 136 ~~LlVlDdv~~~~-------------~~~~l~~---~l~--~~~~~s~iivTtr~~~~~ 176 (839)
++.|++||++... ....++. .+. +.....++|+||.+.+.+
T Consensus 226 pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 226 PCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTL 284 (388)
T ss_pred ceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcccc
Confidence 7999999987420 0111111 111 123567899999988765
No 287
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.37 E-value=0.005 Score=67.31 Aligned_cols=49 Identities=14% Similarity=0.297 Sum_probs=42.4
Q ss_pred CccccchHHHHHHHHHHhc------CCCeeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 34 YKSFESRKSILCDILDWLT------SPNVNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 34 ~~~fvgR~~~~~~l~~~l~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
..+++|.++.++++++.+. ..+.+++.++||+|+||||||+.+++-...
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3568999999999999983 455689999999999999999999987753
No 288
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.089 Score=50.71 Aligned_cols=57 Identities=12% Similarity=0.223 Sum_probs=45.1
Q ss_pred CccccCCCCCccccchHHHHHHHHHHhcC-------------CCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 25 DMWLRSNQGYKSFESRKSILCDILDWLTS-------------PNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 25 ~~~~~~~~~~~~fvgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.++..|-..+..+-|-++.++++.+.+.- ...+-|..+|++|.|||-+|++.+.+-.
T Consensus 161 evDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 161 EVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred eeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 34556777788899999999999998851 1235678999999999999999876654
No 289
>PHA02244 ATPase-like protein
Probab=96.36 E-value=0.02 Score=59.56 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=31.6
Q ss_pred ccccchHHHH----HHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 35 KSFESRKSIL----CDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 35 ~~fvgR~~~~----~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..|+|+...+ .++..++..+ .-|.|+|++|+|||++|+++++...
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567765444 4444454433 3467899999999999999998754
No 290
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.35 E-value=0.015 Score=56.61 Aligned_cols=86 Identities=26% Similarity=0.458 Sum_probs=53.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC-CCHHHHHHHHHHHhhh-------hccCCCchHH-----
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST-ANVKRIQDEIADQLCL-------ELCKGTESER----- 123 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~-------~~~~~~~~~~----- 123 (839)
+.++|.|.+|+|||+|+.++++... -+.++++-+++. ..+.++.+++...-.. ....+.....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 5789999999999999999998874 345577777654 4556666666433111 1111121111
Q ss_pred -HHHHHHHHH-cCCcEEEEEeCCCC
Q 003203 124 -ARTLFDRLW-KENKILVILDDICT 146 (839)
Q Consensus 124 -~~~~~~~l~-~~~~~LlVlDdv~~ 146 (839)
.-.+-+++. +++++|+++||+-.
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred cchhhhHHHhhcCCceeehhhhhHH
Confidence 122223332 48999999999853
No 291
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.35 E-value=0.019 Score=57.89 Aligned_cols=54 Identities=24% Similarity=0.418 Sum_probs=39.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHh----ccCCeEEEEEEecCCCHHHHHHHHHHHh
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQ----NLFDQVIFVLASSTANVKRIQDEIADQL 111 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l 111 (839)
.+.-|+|++|+|||+||-+++-..... ..-..++|++-...+..+++. +|++..
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 589999999999999999987654321 112359999988888877764 566544
No 292
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.34 E-value=0.0059 Score=56.64 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=24.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
+.|.+.|.+|+||||+|++++..++.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 568899999999999999999998765
No 293
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.33 E-value=0.22 Score=51.85 Aligned_cols=47 Identities=26% Similarity=0.169 Sum_probs=33.8
Q ss_pred eEEccCCCHHHHHHHHHHHhCCCCCC--cchHHHHHHHHHHhCCchhHH
Q 003203 185 NYCVSVLNKEEAWSLFKKMVGDYVED--SDLESIAIQVANECGGLPLAI 231 (839)
Q Consensus 185 ~~~l~~L~~~ea~~Lf~~~~~~~~~~--~~~~~~~~~I~~~~~G~Plai 231 (839)
++++++++.+|+..++.-+....-.. ...+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 78999999999999999888332221 233445666777779999654
No 294
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.32 E-value=0.014 Score=60.66 Aligned_cols=57 Identities=25% Similarity=0.332 Sum_probs=41.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHh----ccCCeEEEEEEecCCCHHHHHHHHHHHhhh
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQ----NLFDQVIFVLASSTANVKRIQDEIADQLCL 113 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 113 (839)
-+++-|+|++|+|||++|.+++-..... ..-..++|++....+.++++. ++++.++.
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 3688999999999999999877543211 112468999988888888774 45665543
No 295
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.29 E-value=0.0014 Score=59.47 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=31.7
Q ss_pred cchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 38 ESRKSILCDILDWLT--SPNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 38 vgR~~~~~~l~~~l~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
||+...++++.+.+. .....-|.|.|..|+||+++|+.+++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 577777777777776 23335678999999999999998877544
No 296
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.28 E-value=0.019 Score=56.61 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
+|+|.|.+|+||||+|+.+...+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999988753
No 297
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.27 E-value=0.03 Score=59.68 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=51.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhc--cCCeEEEEEEecCC-CHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQN--LFDQVIFVLASSTA-NVKRIQDEIADQLCLELCKGTESERARTLFDRLW 132 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~ 132 (839)
.++|.++|+.|+||||.+.+++..+.... .-..+..++..... ...+-++..++.++.+................+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 57999999999999999999998776421 12345566655422 122224445555554433222323333333333
Q ss_pred cCCcEEEEEeCCC
Q 003203 133 KENKILVILDDIC 145 (839)
Q Consensus 133 ~~~~~LlVlDdv~ 145 (839)
.+.-++++|.+.
T Consensus 253 -~~~DlVLIDTaG 264 (388)
T PRK12723 253 -KDFDLVLVDTIG 264 (388)
T ss_pred -CCCCEEEEcCCC
Confidence 355688889874
No 298
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.26 E-value=0.01 Score=58.00 Aligned_cols=59 Identities=24% Similarity=0.286 Sum_probs=39.0
Q ss_pred HHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHH
Q 003203 43 ILCDILDWLT--SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVK 101 (839)
Q Consensus 43 ~~~~l~~~l~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 101 (839)
+..++++.+. ..+..+|+|.|++|+|||||..++...+..+.+--.++=|+-|++++--
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGG 74 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGG 74 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC--
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCC
Confidence 4555666665 3467899999999999999999999999876444445556556555433
No 299
>PRK06547 hypothetical protein; Provisional
Probab=96.26 E-value=0.0066 Score=56.99 Aligned_cols=36 Identities=22% Similarity=0.187 Sum_probs=29.0
Q ss_pred HHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 46 DILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 46 ~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.+...+......+|+|.|++|+||||+|+.+.....
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344445567778999999999999999999988753
No 300
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.25 E-value=0.027 Score=55.88 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=33.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEI 107 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 107 (839)
..++.|.|++|+||||+|.+++.....++ ..+++++. ..+..++.+++
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~--e~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVST--QLTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeC--CCCHHHHHHHH
Confidence 35999999999999999988877664332 34566653 33456666655
No 301
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.032 Score=61.89 Aligned_cols=178 Identities=19% Similarity=0.232 Sum_probs=95.4
Q ss_pred CCCCccccchHHHHH---HHHHHhcCCC---------eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC
Q 003203 31 NQGYKSFESRKSILC---DILDWLTSPN---------VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA 98 (839)
Q Consensus 31 ~~~~~~fvgR~~~~~---~l~~~l~~~~---------~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 98 (839)
...+.+.-|.++..+ ++++.|.++. .+-|.++|++|.|||.||++++....+- | ...|.+.
T Consensus 146 ~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS~ 218 (596)
T COG0465 146 KVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGSD 218 (596)
T ss_pred CcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccchh
Confidence 344556778765555 4555555332 3568899999999999999999877654 2 2233221
Q ss_pred CHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc----------------ccccccccCCCCC-
Q 003203 99 NVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI----------------DLVTVGIPFGNAH- 161 (839)
Q Consensus 99 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~~- 161 (839)
-++. . ........+.++..-.++-+..|++|.++... .+.++......++
T Consensus 219 FVem-----f--------VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~ 285 (596)
T COG0465 219 FVEM-----F--------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG 285 (596)
T ss_pred hhhh-----h--------cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC
Confidence 1110 0 11223445556665555678999999887431 1222222222222
Q ss_pred -CCceEEEEeCchhhhh-hhc---CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhH
Q 003203 162 -RGCKILLASRYRDILV-SEM---HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLA 230 (839)
Q Consensus 162 -~~s~iivTtr~~~~~~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 230 (839)
.|..|+-.|..+++.. ... ..++.+.++.-+-..-.+.++-++......++.. ...|++.+-|.-.|
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vd--l~~iAr~tpGfsGA 357 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVD--LKKIARGTPGFSGA 357 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCC--HHHHhhhCCCcccc
Confidence 3333444444444441 111 1234566666665666677776663322222222 23488888776543
No 302
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.24 E-value=0.031 Score=55.99 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=34.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDE 106 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 106 (839)
-.++.|.|++|+|||++|.++......+ -..++|++... +..++.+.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHH
Confidence 4689999999999999999987765322 45688887765 45555554
No 303
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.24 E-value=0.023 Score=57.91 Aligned_cols=28 Identities=18% Similarity=0.102 Sum_probs=23.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 54 PNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 54 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
....+|+|.|+.|+||||+|+.+..-..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4457999999999999999988766554
No 304
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.22 E-value=0.019 Score=56.80 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=31.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA 98 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 98 (839)
-.++.|.|.+|+||||+|.+++.....+ -..++|++....+
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~ 59 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLS 59 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCC
Confidence 4789999999999999999998877533 3457787655444
No 305
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.17 E-value=0.082 Score=62.14 Aligned_cols=63 Identities=10% Similarity=0.198 Sum_probs=43.9
Q ss_pred CCCccccchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec
Q 003203 32 QGYKSFESRKSILCDILDWLT--SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS 96 (839)
Q Consensus 32 ~~~~~fvgR~~~~~~l~~~l~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 96 (839)
.....++|+...++++.+.+. ...-.-|.|+|..|+|||++|+.+.+.-... -...+.+++..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~ 437 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAA 437 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEeccc
Confidence 345679999998888877665 2223467899999999999999997764321 22345555544
No 306
>PRK07667 uridine kinase; Provisional
Probab=96.17 E-value=0.0082 Score=57.95 Aligned_cols=38 Identities=18% Similarity=0.399 Sum_probs=29.8
Q ss_pred HHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 45 CDILDWLT--SPNVNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 45 ~~l~~~l~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
+.+.+.+. +++..+|+|.|.+|+||||+|+.+......
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44555554 344479999999999999999999998864
No 307
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.15 E-value=0.037 Score=57.86 Aligned_cols=89 Identities=22% Similarity=0.259 Sum_probs=53.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCC-HHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHc
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTAN-VKRIQDEIADQLCLELCKGTESERARTLFDRLWK 133 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 133 (839)
+.++++|+|+.|+||||++..++.....++ ..+.+++...... ..+-++..++.++................+.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 357999999999999999999998775442 3466776654322 2333444455554433222233333334444431
Q ss_pred -CCcEEEEEeCCC
Q 003203 134 -ENKILVILDDIC 145 (839)
Q Consensus 134 -~~~~LlVlDdv~ 145 (839)
+..=+|++|-.-
T Consensus 283 ~~~~D~VLIDTAG 295 (407)
T PRK12726 283 VNCVDHILIDTVG 295 (407)
T ss_pred cCCCCEEEEECCC
Confidence 345678888774
No 308
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.15 E-value=0.017 Score=55.33 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
+|.|+|++|+||||+|+.++.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999987663
No 309
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.15 E-value=0.049 Score=67.47 Aligned_cols=27 Identities=22% Similarity=0.181 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..+-|.++|++|.|||.||++++.+..
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcC
Confidence 346788999999999999999998865
No 310
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.09 E-value=0.029 Score=56.37 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
+..|+|++|+|||+||.+++.....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~ 27 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMAL 27 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhc
Confidence 5679999999999999999887654
No 311
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.08 E-value=0.026 Score=53.45 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
++.+.|++|+||||++..++......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999887644
No 312
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.07 E-value=0.065 Score=56.16 Aligned_cols=101 Identities=16% Similarity=0.132 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCC----CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC-CHHHHHHHHHHHhhhhccC
Q 003203 43 ILCDILDWLTSP----NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA-NVKRIQDEIADQLCLELCK 117 (839)
Q Consensus 43 ~~~~l~~~l~~~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~ 117 (839)
....+..++.++ +.++|+++|+.|+||||-..+++.+..-...-..+..|+...-. ...+-++.-++.++.+...
T Consensus 186 ~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~v 265 (407)
T COG1419 186 KLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEV 265 (407)
T ss_pred HHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEE
Confidence 334444454444 36899999999999996555555555422223456677665432 2333344445555555444
Q ss_pred CCchHHHHHHHHHHHcCCcEEEEEeCCC
Q 003203 118 GTESERARTLFDRLWKENKILVILDDIC 145 (839)
Q Consensus 118 ~~~~~~~~~~~~~l~~~~~~LlVlDdv~ 145 (839)
.........-...+. ..=+|.+|-+-
T Consensus 266 v~~~~el~~ai~~l~--~~d~ILVDTaG 291 (407)
T COG1419 266 VYSPKELAEAIEALR--DCDVILVDTAG 291 (407)
T ss_pred ecCHHHHHHHHHHhh--cCCEEEEeCCC
Confidence 444444444444443 23455667653
No 313
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.07 E-value=0.0053 Score=54.89 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 003203 59 IGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 59 v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
|+|.|.+|+||||+|+++..+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 314
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.06 E-value=0.013 Score=53.34 Aligned_cols=35 Identities=23% Similarity=0.177 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEE
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVL 93 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 93 (839)
.+|.|.|.+|+||||||+++.+++... -..++++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEec
Confidence 589999999999999999999999865 34455553
No 315
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.06 E-value=0.01 Score=67.40 Aligned_cols=81 Identities=9% Similarity=0.019 Sum_probs=61.6
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHH
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIAD 109 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 109 (839)
++.....++|+++.++.|...+... +.+.++|++|+||||+|+.+.+.... ..++..+|+.- ...+...+++.+..
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~-~~~~~~~~~~n-p~~~~~~~~~~v~~ 101 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK-EELQDILVYPN-PEDPNNPKIRTVPA 101 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh-HhHHHheEeeC-CCcchHHHHHHHHH
Confidence 3456678999999999888877765 47889999999999999999987643 34567778644 44467777888877
Q ss_pred Hhhhh
Q 003203 110 QLCLE 114 (839)
Q Consensus 110 ~l~~~ 114 (839)
.+|..
T Consensus 102 ~~G~~ 106 (637)
T PRK13765 102 GKGKQ 106 (637)
T ss_pred hcCHH
Confidence 66654
No 316
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.06 E-value=0.014 Score=53.11 Aligned_cols=42 Identities=26% Similarity=0.254 Sum_probs=31.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHH
Q 003203 59 IGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQD 105 (839)
Q Consensus 59 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 105 (839)
|.|+|++|+|||+||+.+++... ....-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEecccccccccee
Confidence 67999999999999999998883 2344567777777776643
No 317
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.04 E-value=0.03 Score=59.53 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..+++++|++|+||||+|.+++....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~ 248 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYF 248 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999997654
No 318
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.16 Score=52.26 Aligned_cols=55 Identities=20% Similarity=0.126 Sum_probs=37.3
Q ss_pred ccccchHHHHHHHHHHhc------------CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec
Q 003203 35 KSFESRKSILCDILDWLT------------SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS 96 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 96 (839)
.++.|-++..+-|.++.. ...=+-|.++|++|.|||-||++|+...... |++||.
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tT-------FFNVSs 278 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTT-------FFNVSS 278 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCe-------EEEech
Confidence 445565555555555543 1123468899999999999999999887643 556654
No 319
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.03 E-value=0.028 Score=58.77 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=41.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHH----hccCCeEEEEEEecCCCHHHHHHHHHHHhhh
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKK----QNLFDQVIFVLASSTANVKRIQDEIADQLCL 113 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 113 (839)
-.++-|+|++|+|||+|+.+++-.... ...-..++|++....+.++++.+ +++.++.
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 368889999999999999998654321 11124689999998888887744 5555544
No 320
>PTZ00301 uridine kinase; Provisional
Probab=96.02 E-value=0.0064 Score=59.07 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=23.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
+.+|+|.|.+|+||||+|+.+...+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999988875
No 321
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.01 E-value=0.0057 Score=59.19 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=23.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
+|+|.|++|+||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999988743
No 322
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.063 Score=54.96 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=36.2
Q ss_pred CccccchHHHHHHHHHHhc----C----------CCeeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 34 YKSFESRKSILCDILDWLT----S----------PNVNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 34 ~~~fvgR~~~~~~l~~~l~----~----------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
..++-|-+...+++.+... . ...+-|.++||+|.|||-+|++++.+...
T Consensus 91 f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga 153 (386)
T KOG0737|consen 91 FDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGA 153 (386)
T ss_pred hhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCC
Confidence 3456677777777766653 0 13467889999999999999999987753
No 323
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.00 E-value=0.045 Score=59.55 Aligned_cols=87 Identities=11% Similarity=0.122 Sum_probs=46.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCC-HHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcC
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTAN-VKRIQDEIADQLCLELCKGTESERARTLFDRLWKE 134 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 134 (839)
.++++++|++|+||||++.+++........-..+..++...... ..+-+....+.++...............++.+ .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~--~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL--R 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh--C
Confidence 36899999999999999999988775111223566666543211 11112222333333322222222222333333 2
Q ss_pred CcEEEEEeCC
Q 003203 135 NKILVILDDI 144 (839)
Q Consensus 135 ~~~LlVlDdv 144 (839)
..=+||+|..
T Consensus 299 ~~DlVlIDt~ 308 (424)
T PRK05703 299 DCDVILIDTA 308 (424)
T ss_pred CCCEEEEeCC
Confidence 4567888966
No 324
>PRK05439 pantothenate kinase; Provisional
Probab=95.97 E-value=0.047 Score=56.18 Aligned_cols=28 Identities=21% Similarity=0.162 Sum_probs=24.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 54 PNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 54 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
...-+|+|.|.+|+||||+|+.+.....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999888665
No 325
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.97 E-value=0.027 Score=59.98 Aligned_cols=85 Identities=24% Similarity=0.280 Sum_probs=50.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCC--CchHHHHHHHHHHHcC
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKG--TESERARTLFDRLWKE 134 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~~ 134 (839)
.++.|.|.+|+|||||+.+++...... -..++|++... +..++. .-++.++...... ........+.+.+...
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EE--s~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEE--SPEQIK-LRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCc--CHHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 689999999999999999999887643 24577776543 233332 2233444322110 0011233444444445
Q ss_pred CcEEEEEeCCCC
Q 003203 135 NKILVILDDICT 146 (839)
Q Consensus 135 ~~~LlVlDdv~~ 146 (839)
+.-++|+|.+..
T Consensus 158 ~~~lVVIDSIq~ 169 (372)
T cd01121 158 KPDLVIIDSIQT 169 (372)
T ss_pred CCcEEEEcchHH
Confidence 677889998753
No 326
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.97 E-value=0.014 Score=58.00 Aligned_cols=61 Identities=26% Similarity=0.300 Sum_probs=45.5
Q ss_pred HHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHH
Q 003203 44 LCDILDWLT--SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQ 104 (839)
Q Consensus 44 ~~~l~~~l~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 104 (839)
-.+++..+. .++..+|+|.|.+|+|||||...+...+..+.+--.++=|+-|++++--.++
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 345566655 4566799999999999999999999999877665566677767666544443
No 327
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.97 E-value=0.0067 Score=47.11 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
+|+|.|..|+||||+|+.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 328
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.017 Score=59.82 Aligned_cols=96 Identities=24% Similarity=0.283 Sum_probs=60.7
Q ss_pred HHHHHHhcCC--CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCC--Cc
Q 003203 45 CDILDWLTSP--NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKG--TE 120 (839)
Q Consensus 45 ~~l~~~l~~~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~ 120 (839)
.++...|..+ .-.+|.|-|.+|||||||.-+++.++..+. .+.||+-.+ +..++ +--++.|+...... -.
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l~a 153 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYLLA 153 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCc--CHHHH-HHHHHHhCCCccceEEeh
Confidence 4444444432 125899999999999999999999998653 566664443 34433 22344555332211 11
Q ss_pred hHHHHHHHHHHHcCCcEEEEEeCCCC
Q 003203 121 SERARTLFDRLWKENKILVILDDICT 146 (839)
Q Consensus 121 ~~~~~~~~~~l~~~~~~LlVlDdv~~ 146 (839)
....+.+.+.+.+.++-++|+|.+..
T Consensus 154 Et~~e~I~~~l~~~~p~lvVIDSIQT 179 (456)
T COG1066 154 ETNLEDIIAELEQEKPDLVVIDSIQT 179 (456)
T ss_pred hcCHHHHHHHHHhcCCCEEEEeccce
Confidence 22345666677667899999999864
No 329
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.083 Score=58.53 Aligned_cols=151 Identities=17% Similarity=0.252 Sum_probs=85.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcE
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKI 137 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 137 (839)
-|.++|++|.|||-||.+++.....+ +|++..+ + ++. +.+| ..++.++.++.+...-+++
T Consensus 703 giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGP---E-lL~---KyIG------aSEq~vR~lF~rA~~a~PC 762 (952)
T KOG0735|consen 703 GILLYGPPGCGKTLLASAIASNSNLR-------FISVKGP---E-LLS---KYIG------ASEQNVRDLFERAQSAKPC 762 (952)
T ss_pred ceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCH---H-HHH---HHhc------ccHHHHHHHHHHhhccCCe
Confidence 48899999999999999998766533 5555442 1 211 2222 2235566777777667999
Q ss_pred EEEEeCCCCcc-------------ccccccccCCC--CCCCceEEEEeCchhhh-hhhcCc---cceEEccCCCHHHHHH
Q 003203 138 LVILDDICTSI-------------DLVTVGIPFGN--AHRGCKILLASRYRDIL-VSEMHS---QYNYCVSVLNKEEAWS 198 (839)
Q Consensus 138 LlVlDdv~~~~-------------~~~~l~~~l~~--~~~~s~iivTtr~~~~~-~~~~~~---~~~~~l~~L~~~ea~~ 198 (839)
.+++|..+... ...++...+.. +-.|.-|+-+|..++.. .....+ ++.+.=+.-++.|-.+
T Consensus 763 iLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~ 842 (952)
T KOG0735|consen 763 ILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLE 842 (952)
T ss_pred EEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHH
Confidence 99999987531 13333333321 22555566544444332 211222 2333334445677777
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHHhCCchhH
Q 003203 199 LFKKMVGDYVEDSDLESIAIQVANECGGLPLA 230 (839)
Q Consensus 199 Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 230 (839)
+|......-..+.+ .-.+.++.+.+|.--|
T Consensus 843 il~~ls~s~~~~~~--vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 843 ILQVLSNSLLKDTD--VDLECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHhhccCCccc--cchHHHhhhcCCCchh
Confidence 88777632111111 1145677888877654
No 330
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.93 E-value=0.029 Score=53.57 Aligned_cols=117 Identities=15% Similarity=0.195 Sum_probs=60.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec--CCCHHHHHH------HHHHHhhhhcc------CCCch
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS--TANVKRIQD------EIADQLCLELC------KGTES 121 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~------~i~~~l~~~~~------~~~~~ 121 (839)
-.+++|.|+.|.|||||++.++.... ...+.+++.-.. ..+...... ++++.++.... .-+..
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 36899999999999999999986543 234444443211 112222211 13344433211 11112
Q ss_pred HHH-HHHHHHHHcCCcEEEEEeCCCCc---cccccccccCCCC-CC-CceEEEEeCchhhh
Q 003203 122 ERA-RTLFDRLWKENKILVILDDICTS---IDLVTVGIPFGNA-HR-GCKILLASRYRDIL 176 (839)
Q Consensus 122 ~~~-~~~~~~l~~~~~~LlVlDdv~~~---~~~~~l~~~l~~~-~~-~s~iivTtr~~~~~ 176 (839)
+.. -.+.+.+. ..+-++++|+--.. ...+.+...+... .. +..||++|.+....
T Consensus 102 ~~qrl~laral~-~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALA-QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHh-cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 222 22333443 57788999987432 2222232222211 12 56788888877654
No 331
>PRK10867 signal recognition particle protein; Provisional
Probab=95.93 E-value=0.079 Score=57.38 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=24.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
..+|.++|++|+||||.|.+++..+..+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 5789999999999999999998877644
No 332
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.93 E-value=0.14 Score=52.03 Aligned_cols=130 Identities=11% Similarity=0.050 Sum_probs=74.4
Q ss_pred HHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHHHHhc------------cCCeEEEEEEecCCCHHHHHHHHHH
Q 003203 43 ILCDILDWLTSPNVN-MIGVYGIGGVGKTALMHEVLFEAKKQN------------LFDQVIFVLASSTANVKRIQDEIAD 109 (839)
Q Consensus 43 ~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~------------~f~~~~wv~~~~~~~~~~~~~~i~~ 109 (839)
.-+++...+..+++. ...++|+.|+||+++|..++..+-... |-| +.|+.-....
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD-~~~i~p~~~~----------- 72 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPD-IHEFSPQGKG----------- 72 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCC-EEEEecCCCC-----------
Confidence 345677777776654 667999999999999999988764321 111 2222111000
Q ss_pred HhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCch-hhhhhhcCc
Q 003203 110 QLCLELCKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRYR-DILVSEMHS 182 (839)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~-~~~~~~~~~ 182 (839)
..-..+.++.+.+.+. .+++-++|+|+++.. +...++...+-.-.+++.+|++|.+. .+..+....
T Consensus 73 -------~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SR 145 (290)
T PRK05917 73 -------RLHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSR 145 (290)
T ss_pred -------CcCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhc
Confidence 0012333444444442 246668889999865 45555555554444566666666664 444333444
Q ss_pred cceEEccCC
Q 003203 183 QYNYCVSVL 191 (839)
Q Consensus 183 ~~~~~l~~L 191 (839)
...+.+.++
T Consensus 146 cq~~~~~~~ 154 (290)
T PRK05917 146 SLSIHIPME 154 (290)
T ss_pred ceEEEccch
Confidence 566777765
No 333
>PRK04328 hypothetical protein; Provisional
Probab=95.93 E-value=0.037 Score=55.79 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=31.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST 97 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 97 (839)
-.++.|.|++|+|||++|.+++.....+ -..++|++....
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~ 62 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEH 62 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCC
Confidence 4689999999999999999987764322 356788877663
No 334
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.92 E-value=0.051 Score=52.60 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccC--------CeEEEEEEecC
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLF--------DQVIFVLASST 97 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f--------~~~~wv~~~~~ 97 (839)
.++.|.|++|+||||++.+++........| ..+.|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 488999999999999999999988754333 24677765544
No 335
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.91 E-value=0.025 Score=53.48 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
-.+++|.|+.|.|||||++.++.-..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 36899999999999999999987643
No 336
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.91 E-value=0.035 Score=50.66 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+++|.|+.|.|||||++.+..-.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 689999999999999999987654
No 337
>PRK14974 cell division protein FtsY; Provisional
Probab=95.90 E-value=0.082 Score=55.28 Aligned_cols=89 Identities=20% Similarity=0.261 Sum_probs=47.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC-CCHHHHHHHHHHHhhhhccC----CCchHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST-ANVKRIQDEIADQLCLELCK----GTESERARTLFDR 130 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~~ 130 (839)
..+++++|+.|+||||++.+++..+... .+ .+..+..... ....+-++..+..++..... .+....+....+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~ 217 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEH 217 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHH
Confidence 5799999999999999999999877643 23 3444433211 11223344455555543211 1111222222222
Q ss_pred HHcCCcEEEEEeCCCC
Q 003203 131 LWKENKILVILDDICT 146 (839)
Q Consensus 131 l~~~~~~LlVlDdv~~ 146 (839)
......=++++|-+-.
T Consensus 218 ~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 218 AKARGIDVVLIDTAGR 233 (336)
T ss_pred HHhCCCCEEEEECCCc
Confidence 2222233888898753
No 338
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.90 E-value=0.0078 Score=57.54 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=25.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 54 PNVNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 54 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
.++.+|+|.|.+|+||||+|+.++..+..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 34679999999999999999999988864
No 339
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.89 E-value=0.09 Score=56.94 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=23.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..++.++|++|+||||.|.+++....
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999988865
No 340
>PTZ00494 tuzin-like protein; Provisional
Probab=95.85 E-value=0.53 Score=49.72 Aligned_cols=166 Identities=10% Similarity=0.094 Sum_probs=97.5
Q ss_pred CCCCCccccchHHHHHHHHHHhc---CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHH
Q 003203 30 SNQGYKSFESRKSILCDILDWLT---SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDE 106 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 106 (839)
.+.....||.|+.|-..+.+.|. ....+++++.|.-|.||++|.+.+..+.. -..++|.+.... +.++.
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~E---DtLrs 437 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGTE---DTLRS 437 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCCc---chHHH
Confidence 34556779999988777777665 44578999999999999999998876654 246778777644 45677
Q ss_pred HHHHhhhhccCC--CchHHHHHHHHHH---HcCCcEEEEEe--CCCCcc-ccccccccCCCCCCCceEEEEeCchhh--h
Q 003203 107 IADQLCLELCKG--TESERARTLFDRL---WKENKILVILD--DICTSI-DLVTVGIPFGNAHRGCKILLASRYRDI--L 176 (839)
Q Consensus 107 i~~~l~~~~~~~--~~~~~~~~~~~~l---~~~~~~LlVlD--dv~~~~-~~~~l~~~l~~~~~~s~iivTtr~~~~--~ 176 (839)
|.+.++.+..+. +..+-+.+-.+.- ..++.-+||+- +-.+.. .... ...+.....-+.|++----+.+ +
T Consensus 438 VVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE-~vaLacDrRlCHvv~EVplESLT~~ 516 (664)
T PTZ00494 438 VVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGE-VVSLVSDCQACHIVLAVPMKALTPL 516 (664)
T ss_pred HHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHH-HHHHHccchhheeeeechHhhhchh
Confidence 788887654321 2223222222222 13444555542 222110 0000 0012222334556653332222 1
Q ss_pred hhhcCccceEEccCCCHHHHHHHHHHHh
Q 003203 177 VSEMHSQYNYCVSVLNKEEAWSLFKKMV 204 (839)
Q Consensus 177 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 204 (839)
......-..|.+++++.++|.++-.+..
T Consensus 517 n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 517 NVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hccCccceeEecCCcCHHHHHHHHhccc
Confidence 2123345679999999999999888776
No 341
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.85 E-value=0.056 Score=58.63 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=36.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC-CCHHHHHHHHHHHhhh
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST-ANVKRIQDEIADQLCL 113 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~ 113 (839)
...+|.++|+.|+||||.|..++..+..++ + .+..++.... ....+.++.++.+++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 357899999999999999999998887542 2 3444444321 1223334455555543
No 342
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=0.0018 Score=59.99 Aligned_cols=71 Identities=17% Similarity=0.202 Sum_probs=53.3
Q ss_pred cccccccchhhhhcccccccccccccccccccCCCCEEEEecCCCcccccchhhhhcCCCccEEEEecccchH
Q 003203 674 CFDAFPLLESLVLHNLIHMEKICHSQLTAVSFCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKCKNVE 746 (839)
Q Consensus 674 ~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~ 746 (839)
.+..+++++.|.+.+|..+.+++..-.. +-+++|+.|+|++|+++++-.. .++..+++|+.|.+++.+.+.
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRITDGGL-ACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeechhHH-HHHHHhhhhHHHHhcCchhhh
Confidence 3456777888888888888877654433 3678999999999999887643 467788888888888876554
No 343
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.84 E-value=0.061 Score=54.75 Aligned_cols=39 Identities=31% Similarity=0.410 Sum_probs=30.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEe
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLAS 95 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 95 (839)
+.++++++|++|+||||++.+++.....+ -..+.+++..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCC
Confidence 45799999999999999999999887643 2356666554
No 344
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.04 Score=53.21 Aligned_cols=98 Identities=16% Similarity=0.251 Sum_probs=61.6
Q ss_pred cCCCCCccccchHHHHHHHHHHhcC-------------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEe
Q 003203 29 RSNQGYKSFESRKSILCDILDWLTS-------------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLAS 95 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 95 (839)
.|-..+.++-|-.++++++.+...- +..+-|.++|++|.|||-+|++++++-.. +|+.|-
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda-------cfirvi 243 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA-------CFIRVI 243 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc-------eEEeeh
Confidence 4445567788888999998887651 23456889999999999999999986542 244332
Q ss_pred cCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCC
Q 003203 96 STANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICT 146 (839)
Q Consensus 96 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~ 146 (839)
.+ +-+++-+ | ......+++++-....|-++|++|.++.
T Consensus 244 gs---elvqkyv----g------egarmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 244 GS---ELVQKYV----G------EGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred hH---HHHHHHh----h------hhHHHHHHHHHHhcccceEEEEeecccc
Confidence 21 1111111 1 1123344455555455778899998863
No 345
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.83 E-value=0.056 Score=54.51 Aligned_cols=87 Identities=20% Similarity=0.298 Sum_probs=54.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHH-hhhhc-cCCCchHHHHHHHHHHHc
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQ-LCLEL-CKGTESERARTLFDRLWK 133 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~~-~~~~~~~~~~~~~~~l~~ 133 (839)
-+++-|+|+.|+||||+|.+++-..... -..++|++....+++..+. ++... +..-. ......+....+...+..
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 4789999999999999999988766533 4579999999988887764 33333 21110 112222222333333321
Q ss_pred ---CCcEEEEEeCCC
Q 003203 134 ---ENKILVILDDIC 145 (839)
Q Consensus 134 ---~~~~LlVlDdv~ 145 (839)
.+--|+|+|.+-
T Consensus 137 ~~~~~i~LvVVDSva 151 (279)
T COG0468 137 SGAEKIDLLVVDSVA 151 (279)
T ss_pred hccCCCCEEEEecCc
Confidence 235688888874
No 346
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.80 E-value=0.033 Score=53.61 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=31.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHH
Q 003203 59 IGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDE 106 (839)
Q Consensus 59 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 106 (839)
+.|.|++|+|||++|.+++...... -..++|++... +..++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCC--CHHHHHHH
Confidence 6799999999999999988876532 24577876654 34444443
No 347
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.79 E-value=0.02 Score=54.62 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+++|.|+.|.|||||++.++.-.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 689999999999999999998654
No 348
>PRK08233 hypothetical protein; Provisional
Probab=95.78 E-value=0.0077 Score=57.72 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=23.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..+|+|.|.+|+||||+|+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998764
No 349
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.77 E-value=0.022 Score=59.83 Aligned_cols=44 Identities=14% Similarity=0.295 Sum_probs=32.8
Q ss_pred ccchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 37 FESRKSILCDILDWLT--SPNVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 37 fvgR~~~~~~l~~~l~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
++|+...++++.+.+. ...-.-|.|+|..|+||+++|+.+.+.-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 4677777777777765 2222457899999999999999887654
No 350
>PTZ00035 Rad51 protein; Provisional
Probab=95.76 E-value=0.044 Score=57.65 Aligned_cols=56 Identities=23% Similarity=0.303 Sum_probs=38.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHH---h-ccCCeEEEEEEecCCCHHHHHHHHHHHhh
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKK---Q-NLFDQVIFVLASSTANVKRIQDEIADQLC 112 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~---~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 112 (839)
-.++.|+|++|+||||++.+++-.... . ..-..++|++-...+..+++ .++++.++
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 468999999999999999998755431 0 11235779988777776664 44455443
No 351
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.75 E-value=0.062 Score=53.81 Aligned_cols=92 Identities=22% Similarity=0.256 Sum_probs=57.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH--HhccCCeEEEEEEecCC-CHHHHHHHHHHHhhhh-------ccCCCchH---
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAK--KQNLFDQVIFVLASSTA-NVKRIQDEIADQLCLE-------LCKGTESE--- 122 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~--~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~--- 122 (839)
-+.++|.|.+|+|||+|+..+.++.. .+.+-+.++++-+++.. +..++..++...=..+ ...+....
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 46789999999999999999887754 12224667888887653 5666666665431111 01111111
Q ss_pred ---HHHHHHHHHH-c-CCcEEEEEeCCCCc
Q 003203 123 ---RARTLFDRLW-K-ENKILVILDDICTS 147 (839)
Q Consensus 123 ---~~~~~~~~l~-~-~~~~LlVlDdv~~~ 147 (839)
....+-+++. + ++++|+++||+-..
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 1233444443 2 69999999998543
No 352
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.75 E-value=0.052 Score=61.80 Aligned_cols=50 Identities=10% Similarity=0.190 Sum_probs=39.6
Q ss_pred CCCccccchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 32 QGYKSFESRKSILCDILDWLT--SPNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 32 ~~~~~fvgR~~~~~~l~~~l~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.....++|+...++++.+.+. ......|.|+|..|+|||++|+.+.+...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 455789999999998888876 22234567999999999999999987643
No 353
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.74 E-value=0.036 Score=51.98 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.+++|+|+.|.|||||++.+.....
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6899999999999999999987643
No 354
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.74 E-value=0.01 Score=58.12 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=24.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 54 PNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 54 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
+...+|+|.|++|+||||||+.+.....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4457999999999999999999988764
No 355
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.73 E-value=0.01 Score=58.30 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=24.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 54 PNVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 54 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+..+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999999876
No 356
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.73 E-value=0.011 Score=50.74 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=21.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 59 IGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 59 v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
|.|+|++|+|||++|+.++.++...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5699999999999999999887643
No 357
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.72 E-value=0.035 Score=57.15 Aligned_cols=68 Identities=13% Similarity=0.061 Sum_probs=47.7
Q ss_pred cCCCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHH
Q 003203 29 RSNQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRI 103 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 103 (839)
..|.....|+=+.+....+..++..+ +.|.|.|++|+||||+|++++...... .+.|+.+...+..++
T Consensus 39 ~~p~~d~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~-----~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 39 HVPDIDPAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWP-----CVRVNLDSHVSRIDL 106 (327)
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCC-----eEEEEecCCCChhhc
Confidence 33444455666777778888888654 468999999999999999999988622 335555555444433
No 358
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.72 E-value=0.05 Score=59.05 Aligned_cols=91 Identities=23% Similarity=0.376 Sum_probs=57.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC-CCHHHHHHHHHHHhhhh-------ccCCCchH----
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST-ANVKRIQDEIADQLCLE-------LCKGTESE---- 122 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 122 (839)
+-+.++|.|.+|+|||||+.++++..... +-+.++++-+++. ..+.++..++...=... ..+++...
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 34688999999999999999999887643 4567777766654 34566666665421111 11111111
Q ss_pred --HHHHHHHHHH-c-CCcEEEEEeCCCC
Q 003203 123 --RARTLFDRLW-K-ENKILVILDDICT 146 (839)
Q Consensus 123 --~~~~~~~~l~-~-~~~~LlVlDdv~~ 146 (839)
.+..+-+++. + ++++|+++||+-.
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 2233344443 2 7999999999854
No 359
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.69 E-value=0.04 Score=57.47 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=38.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHH---hc-cCCeEEEEEEecCCCHHHHHHHHHHHh
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKK---QN-LFDQVIFVLASSTANVKRIQDEIADQL 111 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~---~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l 111 (839)
..++.|+|.+|+||||+|.+++..... .. .-..++|++....+...++ .++++.+
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~ 154 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERY 154 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHc
Confidence 468999999999999999998764321 11 1135789988877777654 3444444
No 360
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.68 E-value=0.038 Score=54.55 Aligned_cols=119 Identities=16% Similarity=0.178 Sum_probs=66.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec-----CCCHHHHHHHHHHHhhhhc------cC-CCchHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS-----TANVKRIQDEIADQLCLEL------CK-GTESER 123 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~------~~-~~~~~~ 123 (839)
-.+++|+|.+|+||||+|+.+..=... -.+.+++.-.+ .....+-..++++.++... +. -+..+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 368999999999999999999865542 23344433211 1122333445555554322 11 122333
Q ss_pred HHHHHHHHHcCCcEEEEEeCCCCcc------ccccccccCCCCCCCceEEEEeCchhhhhh
Q 003203 124 ARTLFDRLWKENKILVILDDICTSI------DLVTVGIPFGNAHRGCKILLASRYRDILVS 178 (839)
Q Consensus 124 ~~~~~~~l~~~~~~LlVlDdv~~~~------~~~~l~~~l~~~~~~s~iivTtr~~~~~~~ 178 (839)
.+....+...-++-++|.|..-..- +.-.+...+ ....|...++.|-+-.++..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dl-q~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDL-QEELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHH-HHHhCCeEEEEEEEHHhhhh
Confidence 3334444445689999999865431 111111111 12346678888888887763
No 361
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.68 E-value=0.0099 Score=54.33 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
+|.+.|++|+||||+|+++.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999876553
No 362
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.063 Score=51.46 Aligned_cols=151 Identities=14% Similarity=0.195 Sum_probs=82.0
Q ss_pred CccccchHHHHHHHHHHhc-------------CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCH
Q 003203 34 YKSFESRKSILCDILDWLT-------------SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANV 100 (839)
Q Consensus 34 ~~~fvgR~~~~~~l~~~l~-------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 100 (839)
+.++-|-+-..+++.+... =+..+-|.++|++|.|||-||++++++-... |+.+...
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~-------firvvgs--- 223 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA-------FIRVVGS--- 223 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchh-------eeeeccH---
Confidence 3456666666666666654 1345778899999999999999999876533 3333221
Q ss_pred HHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc------------ccc----cccccCC--CCCC
Q 003203 101 KRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI------------DLV----TVGIPFG--NAHR 162 (839)
Q Consensus 101 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~------------~~~----~l~~~l~--~~~~ 162 (839)
++.+ +.+|. .....+.+++-...+.+..|++|.++... +.. .+..... +...
T Consensus 224 -efvq---kylge------gprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~ 293 (408)
T KOG0727|consen 224 -EFVQ---KYLGE------GPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTT 293 (408)
T ss_pred -HHHH---HHhcc------CcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCccc
Confidence 1111 12221 11233444544456788899999886421 111 1111111 2335
Q ss_pred CceEEEEeCchhhh-hhhc---CccceEEccCCCHHHHHHHHHHHh
Q 003203 163 GCKILLASRYRDIL-VSEM---HSQYNYCVSVLNKEEAWSLFKKMV 204 (839)
Q Consensus 163 ~s~iivTtr~~~~~-~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~ 204 (839)
+.+||++|...+.+ .... .....++.+--+..+-.-.|....
T Consensus 294 nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~tit 339 (408)
T KOG0727|consen 294 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT 339 (408)
T ss_pred ceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhh
Confidence 67888877654432 1111 123456666444455555555555
No 363
>PF13245 AAA_19: Part of AAA domain
Probab=95.66 E-value=0.03 Score=44.27 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=19.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
+.+++.|.|++|.|||+++.+.....
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34688899999999995555554444
No 364
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.64 E-value=0.018 Score=54.33 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=33.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIAD 109 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 109 (839)
..+|+|-||=|+||||||+.+++++..+ +++-.+.+.+=+..++.++.+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~-----~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK-----VFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc-----eeeecccCChHHHHHHHhHHH
Confidence 4689999999999999999999988632 333344444444455544443
No 365
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.63 E-value=0.037 Score=57.99 Aligned_cols=57 Identities=23% Similarity=0.313 Sum_probs=41.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHH---hc-cCCeEEEEEEecCCCHHHHHHHHHHHhhh
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKK---QN-LFDQVIFVLASSTANVKRIQDEIADQLCL 113 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~---~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 113 (839)
..++-|+|.+|+|||++|.+++-.... +. .-..++|++....+.++++ .+|++.++.
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 468899999999999999988754321 11 1126899999998888776 455665543
No 366
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.23 Score=52.86 Aligned_cols=72 Identities=22% Similarity=0.315 Sum_probs=45.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcC
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKE 134 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 134 (839)
.++-+.+.|++|.|||.||+.++.+.... +.+++.. .|......+. ...++.+++--...
T Consensus 185 p~rglLLfGPpgtGKtmL~~aiAsE~~at-------ff~iSas------------sLtsK~~Ge~-eK~vralf~vAr~~ 244 (428)
T KOG0740|consen 185 PVRGLLLFGPPGTGKTMLAKAIATESGAT-------FFNISAS------------SLTSKYVGES-EKLVRALFKVARSL 244 (428)
T ss_pred ccchhheecCCCCchHHHHHHHHhhhcce-------EeeccHH------------HhhhhccChH-HHHHHHHHHHHHhc
Confidence 35667799999999999999999877543 3333321 1111222222 23344455444456
Q ss_pred CcEEEEEeCCCC
Q 003203 135 NKILVILDDICT 146 (839)
Q Consensus 135 ~~~LlVlDdv~~ 146 (839)
++..|++|+++.
T Consensus 245 qPsvifidEids 256 (428)
T KOG0740|consen 245 QPSVIFIDEIDS 256 (428)
T ss_pred CCeEEEechhHH
Confidence 889999999874
No 367
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.61 E-value=0.043 Score=57.68 Aligned_cols=56 Identities=21% Similarity=0.365 Sum_probs=40.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhcc----CCeEEEEEEecCCCHHHHHHHHHHHhh
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNL----FDQVIFVLASSTANVKRIQDEIADQLC 112 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~ 112 (839)
-.++-|+|++|+|||++|.+++........ -..++|++....++..++. ++++.++
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 468899999999999999999876532211 1368999988887777664 3444443
No 368
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.61 E-value=0.017 Score=55.91 Aligned_cols=111 Identities=10% Similarity=0.078 Sum_probs=55.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCc
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENK 136 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (839)
.+|.|.|+.|+||||++..+....... ....++. +..+. +.........+...............+...+. ..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t-~e~~~--E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr-~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILT-IEDPI--EFVHESKRSLINQREVGLDTLSFENALKAALR-QDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEE-EcCCc--cccccCccceeeecccCCCccCHHHHHHHHhc-CCc
Confidence 478999999999999999988776532 2333332 22211 11100000000000001111112233334443 356
Q ss_pred EEEEEeCCCCccccccccccCCCCCCCceEEEEeCchhhh
Q 003203 137 ILVILDDICTSIDLVTVGIPFGNAHRGCKILLASRYRDIL 176 (839)
Q Consensus 137 ~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~~~ 176 (839)
=.|++|++.+.+........ ...|..++.|+....+.
T Consensus 76 d~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 76 DVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred CEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 68999999876554432222 22455677777665543
No 369
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.60 E-value=0.085 Score=54.38 Aligned_cols=94 Identities=22% Similarity=0.238 Sum_probs=54.2
Q ss_pred HHHHHhcCCC---eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhcc------
Q 003203 46 DILDWLTSPN---VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELC------ 116 (839)
Q Consensus 46 ~l~~~l~~~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------ 116 (839)
.|...|..++ -+++-|+|+.|+||||||.+++...... -..++|+......+... ++.+|.+.+
T Consensus 40 ~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~ 112 (322)
T PF00154_consen 40 ALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQ 112 (322)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HHH-----HHHTT--GGGEEEEE
T ss_pred ccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhhH-----HHhcCccccceEEec
Confidence 3444554333 3699999999999999999999877543 45588998877665543 333443321
Q ss_pred CCCchHHHHHHHHHH-HcCCcEEEEEeCCCCc
Q 003203 117 KGTESERARTLFDRL-WKENKILVILDDICTS 147 (839)
Q Consensus 117 ~~~~~~~~~~~~~~l-~~~~~~LlVlDdv~~~ 147 (839)
+....+.. .+.+.+ ..+.--++|+|.|...
T Consensus 113 P~~~E~al-~~~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 113 PDTGEQAL-WIAEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp -SSHHHHH-HHHHHHHHTTSESEEEEE-CTT-
T ss_pred CCcHHHHH-HHHHHHhhcccccEEEEecCccc
Confidence 22223333 333343 3445568999998754
No 370
>PRK06762 hypothetical protein; Provisional
Probab=95.58 E-value=0.012 Score=55.44 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+|.|.|++|+||||+|+.+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998876
No 371
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.57 E-value=0.05 Score=57.10 Aligned_cols=56 Identities=21% Similarity=0.344 Sum_probs=40.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhc----cCCeEEEEEEecCCCHHHHHHHHHHHhh
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQN----LFDQVIFVLASSTANVKRIQDEIADQLC 112 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 112 (839)
-.++-|+|++|+||||+|.+++....... .-..++|++....++.+++. ++++.++
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 46889999999999999999987754211 11268999988888777654 3444443
No 372
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.56 E-value=0.011 Score=56.90 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
++++|+|.|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998765
No 373
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.55 E-value=0.069 Score=48.93 Aligned_cols=116 Identities=18% Similarity=0.169 Sum_probs=62.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec---CCCHHHHHHHHHHHh-----hhhc--cCCCchHH---
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS---TANVKRIQDEIADQL-----CLEL--CKGTESER--- 123 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l-----~~~~--~~~~~~~~--- 123 (839)
.+|-|++..|.||||+|...+-+....+ + .+.++-.-. ...-..+++.+- .+ +... ......+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g-~-~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHG-Y-RVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 4788999999999999999888766442 2 333333222 223333333320 00 0000 00111111
Q ss_pred ----HHHHHHHHHcCCcEEEEEeCCCCc-----cccccccccCCCCCCCceEEEEeCchhh
Q 003203 124 ----ARTLFDRLWKENKILVILDDICTS-----IDLVTVGIPFGNAHRGCKILLASRYRDI 175 (839)
Q Consensus 124 ----~~~~~~~l~~~~~~LlVlDdv~~~-----~~~~~l~~~l~~~~~~s~iivTtr~~~~ 175 (839)
.....+.+..+.-=|+|||++-.. ...+.+...+.....+.-||+|.|+..-
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~ 140 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPK 140 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCH
Confidence 122222333345569999998643 2334444445555677789999998653
No 374
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.54 E-value=0.057 Score=59.06 Aligned_cols=100 Identities=16% Similarity=0.178 Sum_probs=54.7
Q ss_pred HHHHHhcC-CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeE-EEEEEecCC-CHHHHHHHHHHHhhhhccCCC---
Q 003203 46 DILDWLTS-PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQV-IFVLASSTA-NVKRIQDEIADQLCLELCKGT--- 119 (839)
Q Consensus 46 ~l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~--- 119 (839)
++++++.. .+-+..+|+|++|+|||||++.+++..... +-++. +.+-+.+.. .+.++.+.+-..+-....+..
T Consensus 405 RvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~n-~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~ 483 (672)
T PRK12678 405 RVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITTN-NPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSD 483 (672)
T ss_pred eeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhhc-CCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHH
Confidence 34555542 233578899999999999999999877642 33443 344444432 233333332111111111111
Q ss_pred ---chHHHHHHHHHHH-cCCcEEEEEeCCCC
Q 003203 120 ---ESERARTLFDRLW-KENKILVILDDICT 146 (839)
Q Consensus 120 ---~~~~~~~~~~~l~-~~~~~LlVlDdv~~ 146 (839)
.......+-+++. .++.+||++|++-.
T Consensus 484 ~~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 484 HTTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 1222333444443 57999999999854
No 375
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.54 E-value=0.02 Score=60.25 Aligned_cols=47 Identities=13% Similarity=0.231 Sum_probs=36.7
Q ss_pred CCccccchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHH
Q 003203 33 GYKSFESRKSILCDILDWLT--SPNVNMIGVYGIGGVGKTALMHEVLFE 79 (839)
Q Consensus 33 ~~~~fvgR~~~~~~l~~~l~--~~~~~~v~I~G~~GiGKTtLa~~~~~~ 79 (839)
....++|+...++++.+.+. ...-.-|.|+|..|+||+++|+.+...
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 34568999998888888876 222245779999999999999988753
No 376
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.53 E-value=0.037 Score=59.28 Aligned_cols=88 Identities=18% Similarity=0.263 Sum_probs=52.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC-CHHHHHHHHHHHhhhh-------ccCCCchH-----
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA-NVKRIQDEIADQLCLE-------LCKGTESE----- 122 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 122 (839)
-..++|+|..|+|||||++.++.... .+.++.+-+++.. .+.++..+++..-+.. ..++....
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 36899999999999999998875332 3556666665543 3455555554331111 11111111
Q ss_pred -HHHHHHHHHH-cCCcEEEEEeCCCCc
Q 003203 123 -RARTLFDRLW-KENKILVILDDICTS 147 (839)
Q Consensus 123 -~~~~~~~~l~-~~~~~LlVlDdv~~~ 147 (839)
.+..+-+++. +++++|+++||+-..
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 1222333332 479999999998543
No 377
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.53 E-value=0.087 Score=52.75 Aligned_cols=48 Identities=25% Similarity=0.343 Sum_probs=35.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEI 107 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 107 (839)
-.++.|+|.+|+|||++|.++......+ -..++|++..+. +.++.+++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~ 72 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM 72 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH
Confidence 4689999999999999999997664322 346888887643 45555543
No 378
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.53 E-value=0.0055 Score=62.34 Aligned_cols=89 Identities=22% Similarity=0.295 Sum_probs=46.8
Q ss_pred HHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHH
Q 003203 45 CDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERA 124 (839)
Q Consensus 45 ~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 124 (839)
..+++.+...+ +-+.++|+.|+|||++++......... .| .+.-++.+...+...+++.+-..+..... ..
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~~-~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~--~~---- 93 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDSD-KY-LVITINFSAQTTSNQLQKIIESKLEKRRG--RV---- 93 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTTC-CE-EEEEEES-TTHHHHHHHHCCCTTECECTT--EE----
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCcc-cc-ceeEeeccCCCCHHHHHHHHhhcEEcCCC--CC----
Confidence 34455554454 456899999999999999987654322 11 23345555544444333222111111000 00
Q ss_pred HHHHHHHHcCCcEEEEEeCCCC
Q 003203 125 RTLFDRLWKENKILVILDDICT 146 (839)
Q Consensus 125 ~~~~~~l~~~~~~LlVlDdv~~ 146 (839)
..- ..+|+.++++||+.-
T Consensus 94 ---~gP-~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 94 ---YGP-PGGKKLVLFIDDLNM 111 (272)
T ss_dssp ---EEE-ESSSEEEEEEETTT-
T ss_pred ---CCC-CCCcEEEEEecccCC
Confidence 000 136889999999963
No 379
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.53 E-value=0.12 Score=55.65 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=24.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
..+|.++|+.|+||||+|.+++..++.+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5799999999999999999999877643
No 380
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.52 E-value=0.022 Score=53.25 Aligned_cols=112 Identities=18% Similarity=0.175 Sum_probs=57.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC--CHHHHHHHHHHHhhhhccCCCchHHH-HHHHHHHHc
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA--NVKRIQDEIADQLCLELCKGTESERA-RTLFDRLWK 133 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~~~l~~ 133 (839)
.+++|.|+.|.|||||.+.++.... ...+.+++.-.... +..+.. .+.++.-.+ -+..+.. -.+-+.+.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~q-LS~G~~qrl~laral~- 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDAR---RAGIAMVYQ-LSVGERQMVEIARALA- 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHHH---hcCeEEEEe-cCHHHHHHHHHHHHHh-
Confidence 6899999999999999999876542 34455554322211 111111 111111111 2222222 22333443
Q ss_pred CCcEEEEEeCCCCc---cccccccccCCC-CCCCceEEEEeCchhhh
Q 003203 134 ENKILVILDDICTS---IDLVTVGIPFGN-AHRGCKILLASRYRDIL 176 (839)
Q Consensus 134 ~~~~LlVlDdv~~~---~~~~~l~~~l~~-~~~~s~iivTtr~~~~~ 176 (839)
.++-++++|+.-.. ...+.+...+.. ...|..||++|.+....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 47788889987532 222222222221 12366788888887643
No 381
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.52 E-value=0.09 Score=53.36 Aligned_cols=39 Identities=21% Similarity=0.414 Sum_probs=30.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS 96 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 96 (839)
-.++.|.|++|+|||++|.+++.....+ -..++|++...
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 3689999999999999999987765432 34678887764
No 382
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.51 E-value=0.016 Score=52.36 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS 96 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 96 (839)
++|.|+|+.|+|||||++.+++.+..+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 479999999999999999999998754 345555555554
No 383
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.51 E-value=0.0074 Score=34.54 Aligned_cols=22 Identities=41% Similarity=0.419 Sum_probs=16.3
Q ss_pred CccEEEeCCCcccccCccccCC
Q 003203 432 KLRGLALSEMQLLSLPPSVHLL 453 (839)
Q Consensus 432 ~L~~L~l~~~~~~~lp~~~~~l 453 (839)
+|++|++++|.++.+|+.+++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4788888888888888776543
No 384
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.51 E-value=0.014 Score=54.75 Aligned_cols=43 Identities=21% Similarity=0.071 Sum_probs=32.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCC
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTAN 99 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 99 (839)
..++.+.|+.|+|||.+|+.++..+.. +.....+-++++.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 457889999999999999999988863 1244566666665544
No 385
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.50 E-value=0.029 Score=52.85 Aligned_cols=22 Identities=36% Similarity=0.693 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLF 78 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~ 78 (839)
.+++|+|+.|+|||||.+.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 6899999999999999998853
No 386
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.50 E-value=0.066 Score=50.05 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=44.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcC-CcE
Q 003203 59 IGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKE-NKI 137 (839)
Q Consensus 59 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~ 137 (839)
+.|.|.+|+|||++|.+++... ...++++.-....+. +..+.|.+--......-...+....+.+.+.+. +.-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~ 75 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGD 75 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCC
Confidence 6799999999999999997651 235666655555544 344444432211111112222233344444221 334
Q ss_pred EEEEeCCC
Q 003203 138 LVILDDIC 145 (839)
Q Consensus 138 LlVlDdv~ 145 (839)
.+++|.+.
T Consensus 76 ~VLIDclt 83 (169)
T cd00544 76 VVLIDCLT 83 (169)
T ss_pred EEEEEcHh
Confidence 78899863
No 387
>PRK03839 putative kinase; Provisional
Probab=95.48 E-value=0.012 Score=56.15 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.|.|.|++|+||||+|++++++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998875
No 388
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.46 E-value=0.045 Score=48.84 Aligned_cols=102 Identities=18% Similarity=0.334 Sum_probs=35.6
Q ss_pred hhhcCCCCccEEEeCCCcccccCc-cccCCCCCcEEEccCCCcCCC--cccCCCCCCCEEEccCCCCCCCch-hhcCCCc
Q 003203 425 NFFTGMSKLRGLALSEMQLLSLPP-SVHLLSNLQTLCLDQCVVGDI--SIIGNLKKLEILSLVDSDIERLPN-EIGQLTQ 500 (839)
Q Consensus 425 ~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~ 500 (839)
..|.++.+|+.+.+.. .+..++. .+..+++|+.+.+..+ +..+ ..+.++.+|+.+.+.+ .+..++. .+..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3344444555555443 2333322 3344444455544442 2221 2344444455555543 3333322 2333555
Q ss_pred cCeEecCCCcCCCccCchhhcCccccCeEEcc
Q 003203 501 LRCLDLSFCRNLKVIPPNVISKLTQLEELYMG 532 (839)
Q Consensus 501 L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~ 532 (839)
|+.+.+.. .+..++...+.+. +|+.+.+.
T Consensus 83 l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPS--NITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ECEEEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred ccccccCc--cccEEchhhhcCC-CceEEEEC
Confidence 55555543 1344444444444 55555543
No 389
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.40 E-value=0.025 Score=57.22 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=31.6
Q ss_pred HHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 45 CDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 45 ~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
++..+++...+..++.|.|.+|+|||||+.++.+.+...
T Consensus 93 ~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~ 131 (290)
T PRK10463 93 ERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS 131 (290)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 344555556778999999999999999999999987643
No 390
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.38 E-value=0.029 Score=49.62 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcC--CCeeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 42 SILCDILDWLTS--PNVNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 42 ~~~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
++.+++-+.+.. ....+|.+.|.-|+||||+++.+++.+..
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 344444444442 22358999999999999999999988753
No 391
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.38 E-value=0.012 Score=51.54 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST 97 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 97 (839)
+-|.|.|-+|+||||+|.+++....- -|+++|.-
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~-------~~i~isd~ 41 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGL-------EYIEISDL 41 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCC-------ceEehhhH
Confidence 56889999999999999999855432 37777653
No 392
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.37 E-value=0.12 Score=55.72 Aligned_cols=87 Identities=17% Similarity=0.191 Sum_probs=45.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC-CCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcC
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST-ANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKE 134 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 134 (839)
..+++++|+.|+||||++..++.+.........+..++.... ....+-+....+.++...............+..+ .
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l--~ 268 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHEL--R 268 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHh--c
Confidence 469999999999999999999876543322234444443321 1222223344444444332222222222233333 2
Q ss_pred CcEEEEEeCC
Q 003203 135 NKILVILDDI 144 (839)
Q Consensus 135 ~~~LlVlDdv 144 (839)
..-++++|-.
T Consensus 269 ~~d~VLIDTa 278 (420)
T PRK14721 269 GKHMVLIDTV 278 (420)
T ss_pred CCCEEEecCC
Confidence 3345666664
No 393
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.33 E-value=0.019 Score=58.22 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
+.|.|.|.+|+||||+|+++...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999998775
No 394
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.32 E-value=0.14 Score=59.08 Aligned_cols=88 Identities=18% Similarity=0.184 Sum_probs=49.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC-CHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcC
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA-NVKRIQDEIADQLCLELCKGTESERARTLFDRLWKE 134 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 134 (839)
.++++++|+.|+||||.+.+++...........+..++..... ...+-++...+.++...........+...++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-- 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-- 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc--
Confidence 4699999999999999999999877533222345555543211 1233344444555443322222333333344442
Q ss_pred CcEEEEEeCCC
Q 003203 135 NKILVILDDIC 145 (839)
Q Consensus 135 ~~~LlVlDdv~ 145 (839)
.+=+|++|-.-
T Consensus 263 ~~D~VLIDTAG 273 (767)
T PRK14723 263 DKHLVLIDTVG 273 (767)
T ss_pred CCCEEEEeCCC
Confidence 22467777664
No 395
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.32 E-value=0.034 Score=50.60 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=28.6
Q ss_pred HhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 50 WLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 50 ~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
.+...+..+|-+.|.+|.||||+|..+...+..+
T Consensus 17 ~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 17 ALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred HHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 3445556799999999999999999999998754
No 396
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.31 E-value=0.05 Score=48.55 Aligned_cols=116 Identities=16% Similarity=0.277 Sum_probs=61.7
Q ss_pred CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCc-cccCCCCCcEEEccCCCcCC--CcccCCCCCCCE
Q 003203 404 EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPP-SVHLLSNLQTLCLDQCVVGD--ISIIGNLKKLEI 480 (839)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~ 480 (839)
++.+|+.+.+.. ....++...|.++.+|+.+.+.++ +..++. .+..+++|+.+.+.. .+.. ...+..+.+|+.
T Consensus 10 ~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 10 NCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 667888888764 346778888888888999998875 665544 566777899999866 3333 356777889999
Q ss_pred EEccCCCCCCCch-hhcCCCccCeEecCCCcCCCccCchhhcCccccC
Q 003203 481 LSLVDSDIERLPN-EIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLE 527 (839)
Q Consensus 481 L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~ 527 (839)
+++..+ +..++. .+.+. +|+.+.+.. .+..++...+.++++|+
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKLK 129 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG------
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccCC
Confidence 998765 555544 35565 888888765 46677776677776663
No 397
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.30 E-value=0.015 Score=52.03 Aligned_cols=44 Identities=25% Similarity=0.330 Sum_probs=32.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhh
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLE 114 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 114 (839)
+|.|-|++|+||||+|+.++++..-. .++ .-.+.+++++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~vs------aG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LVS------AGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------eee------ccHHHHHHHHHcCCC
Confidence 68999999999999999999988633 222 224567777766654
No 398
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.28 E-value=0.085 Score=48.41 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
+|.|.|.+|+||||+|+.+......
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999988753
No 399
>PRK04040 adenylate kinase; Provisional
Probab=95.28 E-value=0.017 Score=55.30 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.+|+|+|++|+||||+++.+...+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999998874
No 400
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.28 E-value=0.034 Score=63.45 Aligned_cols=77 Identities=10% Similarity=0.009 Sum_probs=53.0
Q ss_pred CCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhh
Q 003203 33 GYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLC 112 (839)
Q Consensus 33 ~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 112 (839)
-...++|+++..+.+...+... +.+.++|++|+||||+|+.+.+..... .|...+++ .....+..++++.+...++
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~-~n~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVY-PNPEDPNMPRIVEVPAGEG 91 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEE-eCCCCCchHHHHHHHHhhc
Confidence 3467899999888888877765 366699999999999999999877543 23333332 2222345556777766665
Q ss_pred h
Q 003203 113 L 113 (839)
Q Consensus 113 ~ 113 (839)
.
T Consensus 92 ~ 92 (608)
T TIGR00764 92 R 92 (608)
T ss_pred h
Confidence 4
No 401
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.27 E-value=0.086 Score=58.88 Aligned_cols=97 Identities=11% Similarity=0.129 Sum_probs=56.7
Q ss_pred HHHHHHHhcC--CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccC----
Q 003203 44 LCDILDWLTS--PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCK---- 117 (839)
Q Consensus 44 ~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---- 117 (839)
+..+.+.|.. ..-.++.|.|++|+|||||+.+++.....+ -..++|++..+ +..++.... +.++.+...
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~ 323 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQ 323 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhC
Confidence 3445555542 223689999999999999999999887543 34566765544 455555543 333321110
Q ss_pred ------------CCchHHHHHHHHHHHcCCcEEEEEeCCC
Q 003203 118 ------------GTESERARTLFDRLWKENKILVILDDIC 145 (839)
Q Consensus 118 ------------~~~~~~~~~~~~~l~~~~~~LlVlDdv~ 145 (839)
....+.+..+.+.+.+.+.-.+|+|.+.
T Consensus 324 g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 324 GLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred CcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 1123444555555544455567777764
No 402
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.26 E-value=0.11 Score=56.09 Aligned_cols=88 Identities=15% Similarity=0.231 Sum_probs=51.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC-CHHHHHHHHHHHhhhh-------ccCCCchH----
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA-NVKRIQDEIADQLCLE-------LCKGTESE---- 122 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 122 (839)
+...++|+|..|+|||||++++++... .+.++++-+++.. .+.++..+.+..-+.. ..++....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 346889999999999999998886653 2455556565543 3445554443322111 01111111
Q ss_pred --HHHHHHHHHH-cCCcEEEEEeCCCC
Q 003203 123 --RARTLFDRLW-KENKILVILDDICT 146 (839)
Q Consensus 123 --~~~~~~~~l~-~~~~~LlVlDdv~~ 146 (839)
....+-+++. +++++|+++||+-.
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 1222333332 58999999999854
No 403
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.26 E-value=0.099 Score=57.21 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=29.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEe
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLAS 95 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 95 (839)
.++++++|+.|+||||++.+++.....+.....+..++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~D 295 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTD 295 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 4699999999999999999999887543222235555443
No 404
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.24 E-value=0.0068 Score=34.72 Aligned_cols=21 Identities=24% Similarity=0.548 Sum_probs=11.8
Q ss_pred CCCEEEccCCCCCCCchhhcC
Q 003203 477 KLEILSLVDSDIERLPNEIGQ 497 (839)
Q Consensus 477 ~L~~L~l~~~~l~~lp~~i~~ 497 (839)
+|++|++++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 355666666666666555443
No 405
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.24 E-value=0.084 Score=52.09 Aligned_cols=119 Identities=20% Similarity=0.306 Sum_probs=65.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhc----c-------C---CeEEEEEEecCC------CHH---------------
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQN----L-------F---DQVIFVLASSTA------NVK--------------- 101 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~----~-------f---~~~~wv~~~~~~------~~~--------------- 101 (839)
.+++|+|+.|.|||||.+.+..-.+... . . ..+.||.-.... ++.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6899999999999999999987332100 0 1 234454321111 111
Q ss_pred -------HHHHHHHHHhhhhc------cCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc------cccccccccCCCCCC
Q 003203 102 -------RIQDEIADQLCLEL------CKGTESERARTLFDRLWKENKILVILDDICTS------IDLVTVGIPFGNAHR 162 (839)
Q Consensus 102 -------~~~~~i~~~l~~~~------~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~------~~~~~l~~~l~~~~~ 162 (839)
+...+.++.++... ..-+-.+..+.++.+.+...+=|++||.--.. ...-.+...+.. .
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--e 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--E 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--C
Confidence 22333344444322 11233344555555555578889999974321 122222222222 3
Q ss_pred CceEEEEeCchhhhh
Q 003203 163 GCKILLASRYRDILV 177 (839)
Q Consensus 163 ~s~iivTtr~~~~~~ 177 (839)
|..|+++|-+-....
T Consensus 189 g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 GKTVLMVTHDLGLVM 203 (254)
T ss_pred CCEEEEEeCCcHHhH
Confidence 888999999877654
No 406
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.24 E-value=0.038 Score=52.87 Aligned_cols=42 Identities=31% Similarity=0.441 Sum_probs=31.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANV 100 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 100 (839)
.|+|.|-||+||||+|..++.++..++.| .+.-|+..+.+++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCCh
Confidence 58999999999999999988777665433 3555565555543
No 407
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.24 E-value=0.069 Score=57.55 Aligned_cols=87 Identities=16% Similarity=0.279 Sum_probs=48.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhh------ccCCCchH------HH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLE------LCKGTESE------RA 124 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~------~~~~~~~~------~~ 124 (839)
..++|+|+.|+|||||++.+..... ....+++..-....++.++........... ..++.... ..
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 5899999999999999987765432 223444443334445555544433332111 11111111 12
Q ss_pred HHHHHHHH-cCCcEEEEEeCCCC
Q 003203 125 RTLFDRLW-KENKILVILDDICT 146 (839)
Q Consensus 125 ~~~~~~l~-~~~~~LlVlDdv~~ 146 (839)
..+-+++. +++.+|+++||+-.
T Consensus 243 ~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHcCCCEEEeccchHH
Confidence 22333332 47999999999854
No 408
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.23 E-value=0.043 Score=51.99 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+++|.|+.|.|||||++.++...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 689999999999999999998754
No 409
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.22 E-value=0.53 Score=48.06 Aligned_cols=139 Identities=10% Similarity=0.075 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHHHHhcc-------------------CCeEEEEEEecCCCH
Q 003203 41 KSILCDILDWLTSPNVN-MIGVYGIGGVGKTALMHEVLFEAKKQNL-------------------FDQVIFVLASSTANV 100 (839)
Q Consensus 41 ~~~~~~l~~~l~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------f~~~~wv~~~~~~~~ 100 (839)
....+.+...+..+++. ...++| |+||+++|..++..+-..+. +..+.|+.-..
T Consensus 8 ~~~~~~L~~~~~~~rl~hAyLf~G--~~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~---- 81 (290)
T PRK07276 8 PKVFQRFQTILEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQG---- 81 (290)
T ss_pred HHHHHHHHHHHHcCCcceeeeeeC--CccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCC----
Confidence 34566677777777654 556777 58999999998876543221 11122321110
Q ss_pred HHHHHHHHHHhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCch-
Q 003203 101 KRIQDEIADQLCLELCKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRYR- 173 (839)
Q Consensus 101 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~- 173 (839)
..-..+.++.+.+.+. .+++-++|+||++.. .....+...+-.-.+++.+|++|.+.
T Consensus 82 ----------------~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~ 145 (290)
T PRK07276 82 ----------------QVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDEN 145 (290)
T ss_pred ----------------CcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChh
Confidence 0112334444444443 256678999999865 34555555554444556666666554
Q ss_pred hhhhhhcCccceEEccCCCHHHHHHHHHH
Q 003203 174 DILVSEMHSQYNYCVSVLNKEEAWSLFKK 202 (839)
Q Consensus 174 ~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 202 (839)
.++.+.......+.+.+ +.++..+.+..
T Consensus 146 ~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 146 KVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred hCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 45554445567788876 77777777753
No 410
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.21 E-value=0.05 Score=51.35 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+++|.|+.|+|||||++.+..-.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 689999999999999999987654
No 411
>PRK00625 shikimate kinase; Provisional
Probab=95.21 E-value=0.016 Score=54.36 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.|.|+|++|+||||+|+.+.++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988774
No 412
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.21 E-value=0.022 Score=53.01 Aligned_cols=29 Identities=17% Similarity=0.370 Sum_probs=25.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
..++++|+|..|+|||||++.+...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 45799999999999999999999988753
No 413
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.21 E-value=0.12 Score=55.57 Aligned_cols=52 Identities=17% Similarity=0.419 Sum_probs=39.2
Q ss_pred ccchHHHHHHHHHHhc-----CC--CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEE
Q 003203 37 FESRKSILCDILDWLT-----SP--NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFV 92 (839)
Q Consensus 37 fvgR~~~~~~l~~~l~-----~~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv 92 (839)
+-=..+.++++..||. .+ +.+++.|.|++|+||||.++.++.... +..+=|.
T Consensus 84 LAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg----~~~~Ew~ 142 (634)
T KOG1970|consen 84 LAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG----YQLIEWS 142 (634)
T ss_pred HhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC----ceeeeec
Confidence 3333456788888887 33 456999999999999999999987765 4456676
No 414
>PRK13949 shikimate kinase; Provisional
Probab=95.20 E-value=0.03 Score=52.62 Aligned_cols=24 Identities=33% Similarity=0.274 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.|+|+|+.|+||||+|+.+++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998875
No 415
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.20 E-value=0.046 Score=57.94 Aligned_cols=48 Identities=21% Similarity=0.137 Sum_probs=37.7
Q ss_pred ccccchHHHHHHHHHHhcCC--------------CeeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 35 KSFESRKSILCDILDWLTSP--------------NVNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~~~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
..++|.++..+.+.-++... ..+.|.++|++|+|||++|+.++.....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45889998888886655421 1357899999999999999999988753
No 416
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.19 E-value=0.012 Score=51.01 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 59 IGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 59 v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
|.|+|.+|+||||+|+.++.....
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~ 25 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGL 25 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-
T ss_pred EeeECCCccHHHHHHHHHHHHcCC
Confidence 679999999999999999988763
No 417
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.18 E-value=0.048 Score=59.91 Aligned_cols=85 Identities=20% Similarity=0.257 Sum_probs=48.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCC--CchHHHHHHHHHHHc
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKG--TESERARTLFDRLWK 133 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~ 133 (839)
-.++.|.|.+|+|||||+.+++.....+ -..++|++..+ +..++... ++.++...... ........+.+.+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 3689999999999999999999887632 23577776543 33333222 34444321100 000112334444444
Q ss_pred CCcEEEEEeCCC
Q 003203 134 ENKILVILDDIC 145 (839)
Q Consensus 134 ~~~~LlVlDdv~ 145 (839)
.+.-++|+|.+.
T Consensus 155 ~~~~lVVIDSIq 166 (446)
T PRK11823 155 EKPDLVVIDSIQ 166 (446)
T ss_pred hCCCEEEEechh
Confidence 456678888874
No 418
>PRK15453 phosphoribulokinase; Provisional
Probab=95.15 E-value=0.13 Score=51.59 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=23.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
+..+|+|.|.+|+||||+|+.+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999987664
No 419
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.15 E-value=0.07 Score=57.58 Aligned_cols=91 Identities=20% Similarity=0.306 Sum_probs=57.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC-CHHHHHHHHHHHhhhh-------ccCCCchH-----
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA-NVKRIQDEIADQLCLE-------LCKGTESE----- 122 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 122 (839)
-+.++|.|.+|+|||+|+.++++.... .+-+.++|+-+++.. .+.++.+++...=... ..++....
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 367899999999999999999887653 234677888776553 4556666655421111 11111111
Q ss_pred -HHHHHHHHHH--cCCcEEEEEeCCCCc
Q 003203 123 -RARTLFDRLW--KENKILVILDDICTS 147 (839)
Q Consensus 123 -~~~~~~~~l~--~~~~~LlVlDdv~~~ 147 (839)
.+..+-+++. +++++|+++||+-..
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 2333444554 379999999998543
No 420
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.15 E-value=0.21 Score=46.37 Aligned_cols=119 Identities=15% Similarity=0.101 Sum_probs=63.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCe-EE-EEEEecCCCHHHHHHHHH---HHhhhh--ccCCCch---H---
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQ-VI-FVLASSTANVKRIQDEIA---DQLCLE--LCKGTES---E--- 122 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~-wv~~~~~~~~~~~~~~i~---~~l~~~--~~~~~~~---~--- 122 (839)
..+|-|++..|.||||.|..++.+..... +.. ++ |+.-.........+..+. .+.+.. ....... .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g-~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHG-KKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCC-CeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 36888999999999999999888776442 222 22 222221223333333320 000110 0011111 1
Q ss_pred -HHHHHHHHHHcCCcEEEEEeCCCCc-----cccccccccCCCCCCCceEEEEeCchhh
Q 003203 123 -RARTLFDRLWKENKILVILDDICTS-----IDLVTVGIPFGNAHRGCKILLASRYRDI 175 (839)
Q Consensus 123 -~~~~~~~~l~~~~~~LlVlDdv~~~-----~~~~~l~~~l~~~~~~s~iivTtr~~~~ 175 (839)
......+.+..+.-=++|||.+-.. -..+.+...+....++.-||+|-|+..-
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~ 142 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQ 142 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCH
Confidence 1222233333445569999998643 2233444445556677899999998753
No 421
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.12 Score=50.80 Aligned_cols=97 Identities=21% Similarity=0.266 Sum_probs=62.7
Q ss_pred cCCCCCccccchHHHHHHHHHHhcC-------------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEe
Q 003203 29 RSNQGYKSFESRKSILCDILDWLTS-------------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLAS 95 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 95 (839)
.|...+.++=|-+..+++|.+...- ...+-|.++|.+|.|||-||++|+|+-... |-
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT--Fl-------- 248 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT--FL-------- 248 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh--hh--------
Confidence 3445567788899999999988761 123467799999999999999999876533 31
Q ss_pred cCCCHHHHHHHHH-HHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCC
Q 003203 96 STANVKRIQDEIA-DQLCLELCKGTESERARTLFDRLWKENKILVILDDICT 146 (839)
Q Consensus 96 ~~~~~~~~~~~i~-~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~ 146 (839)
+-+-.++. .++| +.....+++++......+-.+++|.++.
T Consensus 249 -----RvvGseLiQkylG------dGpklvRqlF~vA~e~apSIvFiDEIdA 289 (440)
T KOG0726|consen 249 -----RVVGSELIQKYLG------DGPKLVRELFRVAEEHAPSIVFIDEIDA 289 (440)
T ss_pred -----hhhhHHHHHHHhc------cchHHHHHHHHHHHhcCCceEEeehhhh
Confidence 11111222 2222 2234555666665556778888888763
No 422
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.14 E-value=0.048 Score=47.17 Aligned_cols=47 Identities=9% Similarity=0.101 Sum_probs=35.1
Q ss_pred ccccchHHHHHHHHHHhc----C---CCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 35 KSFESRKSILCDILDWLT----S---PNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~----~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..++|.+-..+.+.+++. + ++.=|+.++|.+|+|||.+|+.+++.+-
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly 78 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLY 78 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence 457787766666666654 2 2344889999999999999999998843
No 423
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.13 E-value=0.099 Score=51.61 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHH
Q 003203 59 IGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 59 v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
|.|.|++|+||||+|+.+++++.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999988764
No 424
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.11 E-value=0.029 Score=58.62 Aligned_cols=50 Identities=12% Similarity=0.186 Sum_probs=40.3
Q ss_pred CCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 31 NQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 31 ~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
|-+...++|.+..++.+.-.+...+..-+.+.|..|+||||+|+.+..-+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 45567799999999888865554444568899999999999999997765
No 425
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.11 E-value=0.02 Score=54.42 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=23.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
...|.|+|++|+||||+|+.++....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998874
No 426
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.09 E-value=0.04 Score=56.79 Aligned_cols=47 Identities=13% Similarity=0.224 Sum_probs=41.7
Q ss_pred ccccchHHHHHHHHHHhc------CCCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 35 KSFESRKSILCDILDWLT------SPNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..|+|.++.++++++.+. +.+.+++.+.||.|.||||||..+.+-++
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 479999999999999986 34568999999999999999999988776
No 427
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.07 E-value=0.13 Score=55.66 Aligned_cols=90 Identities=20% Similarity=0.332 Sum_probs=56.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC-CCHHHHHHHHHHHhhhh-------ccCCCchH-----
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST-ANVKRIQDEIADQLCLE-------LCKGTESE----- 122 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 122 (839)
-+.++|.|.+|+|||||+.+++....... -+.++++-+++. ..+.++++++...=... ..+.....
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 46789999999999999999988776432 245677766554 34566666665431111 11111111
Q ss_pred -HHHHHHHHHH--cCCcEEEEEeCCCC
Q 003203 123 -RARTLFDRLW--KENKILVILDDICT 146 (839)
Q Consensus 123 -~~~~~~~~l~--~~~~~LlVlDdv~~ 146 (839)
....+-+++. +++++|+++||+-.
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHH
Confidence 1233344442 57999999999854
No 428
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.07 E-value=0.027 Score=54.76 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=25.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
...|.++||+|+||||..++++.+...+
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~ 46 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLHAK 46 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHhhc
Confidence 4578899999999999999999998765
No 429
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.06 E-value=0.036 Score=59.81 Aligned_cols=47 Identities=15% Similarity=0.003 Sum_probs=35.8
Q ss_pred ccccchHHHHHHHHHHhc-------CC---------CeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 35 KSFESRKSILCDILDWLT-------SP---------NVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~-------~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..++|.+..++.+...+. .. ..+.+.++|++|+|||++|+.++....
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 458999998887765542 10 125689999999999999999987664
No 430
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.06 E-value=0.048 Score=51.61 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+++|+|+.|.|||||++.++...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999987654
No 431
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.03 E-value=0.041 Score=53.90 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFE 79 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~ 79 (839)
.++++|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999998743
No 432
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.03 E-value=0.05 Score=54.51 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 43 ILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 43 ~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
..+.+...+.... +..|+|++|.||||++..+....
T Consensus 6 Q~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 3445555554442 78999999999998888887776
No 433
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.03 E-value=0.031 Score=58.49 Aligned_cols=52 Identities=10% Similarity=0.190 Sum_probs=44.6
Q ss_pred CCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 31 NQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 31 ~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
.-+...+||.++....|.....++...-|.|.|..|+||||+|+.+++-...
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~ 64 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPE 64 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4456779999999999988888888888889999999999999999877653
No 434
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.03 E-value=0.027 Score=53.49 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=24.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
...+|+|.|++|+||||+|++++.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3469999999999999999999998864
No 435
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.02 E-value=0.023 Score=53.04 Aligned_cols=24 Identities=50% Similarity=0.625 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 59 IGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 59 v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
|.|.|.+|+||||+++++++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999999864
No 436
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.02 E-value=0.047 Score=57.79 Aligned_cols=62 Identities=15% Similarity=0.070 Sum_probs=47.6
Q ss_pred ccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHH
Q 003203 37 FESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQD 105 (839)
Q Consensus 37 fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 105 (839)
++|+++.+..+...+..+ +-+.+.|++|+|||+||++++..... ..+++.+.+.....++..
T Consensus 26 ~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l~~-----~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 26 VVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARALGL-----PFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred eeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHhCC-----CeEEEecCCCCCHHHhcC
Confidence 888999988888887766 46789999999999999999988752 245566666555555543
No 437
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.02 E-value=0.026 Score=54.09 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=29.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEe
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLAS 95 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 95 (839)
.++++|+|+.|+|||||++++..+... .|..+++.+-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~--~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPD--KFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTT--TEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccc--ccccceeeccc
Confidence 478999999999999999999988763 36555554443
No 438
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.00 E-value=0.02 Score=54.64 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
++++|.|++|+||||+|+.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988764
No 439
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.98 E-value=0.018 Score=54.62 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 440
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.97 E-value=0.12 Score=50.08 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
++++|.|+.|.||||+++.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999997655
No 441
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=94.95 E-value=0.062 Score=48.55 Aligned_cols=37 Identities=19% Similarity=0.056 Sum_probs=28.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEE
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLA 94 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 94 (839)
.+.|.|+.|+|||+.+..++.+.........++|+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p 38 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAP 38 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcC
Confidence 4689999999999999998888765434556777643
No 442
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.91 E-value=0.024 Score=53.78 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 6899999999999999999987753
No 443
>PRK06217 hypothetical protein; Validated
Probab=94.88 E-value=0.021 Score=54.72 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.|+|.|.+|+||||+|+++.....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998874
No 444
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.87 E-value=0.031 Score=54.71 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=29.0
Q ss_pred HHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 48 LDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 48 ~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.+.+.+.++++|+++|+.|+|||||..++.+...
T Consensus 14 ~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 14 RERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HHHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445577899999999999999999999988764
No 445
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.87 E-value=0.074 Score=52.75 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
-.+++|.|+.|+|||||.+.++.-.+
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 36999999999999999999987543
No 446
>PRK08149 ATP synthase SpaL; Validated
Probab=94.86 E-value=0.11 Score=55.97 Aligned_cols=87 Identities=16% Similarity=0.293 Sum_probs=51.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec-CCCHHHHHHHHHHHhhhh-------ccCCCchH-----
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS-TANVKRIQDEIADQLCLE-------LCKGTESE----- 122 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 122 (839)
-..++|+|.+|+|||||+..++.... -+.++...+.. ..++.++..+........ ..++....
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 36889999999999999998876432 23444444443 344566666655532211 11111111
Q ss_pred -HHHHHHHHHH-cCCcEEEEEeCCCC
Q 003203 123 -RARTLFDRLW-KENKILVILDDICT 146 (839)
Q Consensus 123 -~~~~~~~~l~-~~~~~LlVlDdv~~ 146 (839)
....+-+++. +++++|+++||+-.
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchHH
Confidence 2223333332 58999999999854
No 447
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.86 E-value=0.093 Score=56.41 Aligned_cols=91 Identities=18% Similarity=0.192 Sum_probs=55.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHH-----------hccCCeEEEEEEecCCCHHHHHHHHHHHhh-hhc-------c
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKK-----------QNLFDQVIFVLASSTANVKRIQDEIADQLC-LEL-------C 116 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~-----------~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~-------~ 116 (839)
-+-++|.|.+|+|||||+.++++.... ++.-..+++.-+++.....+.+.+.+..-+ ... .
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 467899999999999999998877641 001115677777777555555554444433 110 1
Q ss_pred CCCchH------HHHHHHHHHH--cCCcEEEEEeCCCC
Q 003203 117 KGTESE------RARTLFDRLW--KENKILVILDDICT 146 (839)
Q Consensus 117 ~~~~~~------~~~~~~~~l~--~~~~~LlVlDdv~~ 146 (839)
++...+ ....+-+.+. +++++|+++||+-.
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 111111 2233444554 47999999999853
No 448
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.86 E-value=0.044 Score=57.43 Aligned_cols=47 Identities=15% Similarity=0.245 Sum_probs=39.7
Q ss_pred CccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 34 YKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 34 ~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
...+||.+..+..++-.+.++...-+.|.|..|+||||+++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 45689999999888777777666778899999999999999997665
No 449
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=94.85 E-value=0.13 Score=55.95 Aligned_cols=92 Identities=20% Similarity=0.238 Sum_probs=56.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC-CCHHHHHHHHHHHhh--hh------------ccCCC
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST-ANVKRIQDEIADQLC--LE------------LCKGT 119 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~--~~------------~~~~~ 119 (839)
+-+.++|.|.+|+|||||+.++....... +-+.++++-+++. ..+.+++.++...=. .. ..++.
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~~-~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p 238 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 238 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHHh-cCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCC
Confidence 34678999999999999999988874422 1267788877665 346667666654110 00 01111
Q ss_pred ch------HHHHHHHHHHHc-CC-cEEEEEeCCCCc
Q 003203 120 ES------ERARTLFDRLWK-EN-KILVILDDICTS 147 (839)
Q Consensus 120 ~~------~~~~~~~~~l~~-~~-~~LlVlDdv~~~ 147 (839)
.. .....+-+++.. ++ ++|+++||+-..
T Consensus 239 ~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 239 PGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 11 123334455543 44 999999998643
No 450
>COG4240 Predicted kinase [General function prediction only]
Probab=94.84 E-value=0.19 Score=47.75 Aligned_cols=83 Identities=12% Similarity=0.109 Sum_probs=50.8
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhh-----hhccCCCchHHHHHH
Q 003203 53 SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLC-----LELCKGTESERARTL 127 (839)
Q Consensus 53 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-----~~~~~~~~~~~~~~~ 127 (839)
.++.-+++|.|+-|+||||++..+++.+..++. ..+...++..-.-...-...++++.. ...+...+......+
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 345568999999999999999999999987643 35555554433322222333444431 122233444556667
Q ss_pred HHHHHcCCc
Q 003203 128 FDRLWKENK 136 (839)
Q Consensus 128 ~~~l~~~~~ 136 (839)
++.+.+++.
T Consensus 126 Lnai~~g~~ 134 (300)
T COG4240 126 LNAIARGGP 134 (300)
T ss_pred HHHHhcCCC
Confidence 777766553
No 451
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.84 E-value=0.11 Score=59.93 Aligned_cols=83 Identities=19% Similarity=0.254 Sum_probs=53.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhcc-----CCCchHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELC-----KGTESERARTLFDR 130 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~ 130 (839)
-+++-|.|++|+||||||.+++.....+ -..++|+.....++.. .++.++.+.. .....+.+..+...
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~~ 132 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 132 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHHH
Confidence 4789999999999999999877665433 3457898877766632 5555654321 11222333333333
Q ss_pred -HHcCCcEEEEEeCCC
Q 003203 131 -LWKENKILVILDDIC 145 (839)
Q Consensus 131 -l~~~~~~LlVlDdv~ 145 (839)
+..++--|||+|.+.
T Consensus 133 lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 133 LIRSGALDIVVIDSVA 148 (790)
T ss_pred HhhcCCCeEEEEcchh
Confidence 334567799999985
No 452
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.84 E-value=0.027 Score=51.52 Aligned_cols=29 Identities=24% Similarity=0.536 Sum_probs=26.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhc
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQN 84 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~ 84 (839)
.++++|+|+.|+|||||+.++...++.++
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G 30 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARG 30 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCC
Confidence 36899999999999999999999998764
No 453
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.84 E-value=0.048 Score=51.94 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=32.7
Q ss_pred CccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHH
Q 003203 34 YKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFE 79 (839)
Q Consensus 34 ~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 79 (839)
...++|.+.....+.-..... .-+.++|++|+|||++|+.+..-
T Consensus 2 f~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHC
T ss_pred hhhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHh
Confidence 467889888777776665543 57889999999999999998654
No 454
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.83 E-value=0.024 Score=53.90 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
+|+|.|.+|+||||+|+.+......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988764
No 455
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=94.81 E-value=0.16 Score=56.88 Aligned_cols=48 Identities=8% Similarity=0.124 Sum_probs=38.3
Q ss_pred CCccccchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 33 GYKSFESRKSILCDILDWLT--SPNVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 33 ~~~~fvgR~~~~~~l~~~l~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
....++|....++++.+.+. ...-.-|.|.|..|+||+++|+.+++.-
T Consensus 210 ~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S 259 (526)
T TIGR02329 210 RLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLS 259 (526)
T ss_pred chhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhc
Confidence 34569999998888888875 2223577899999999999999998754
No 456
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.80 E-value=0.068 Score=53.22 Aligned_cols=48 Identities=21% Similarity=0.358 Sum_probs=31.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEI 107 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 107 (839)
.++.|.|++|+|||++|.+++.....+. -..++|++... +..++.+.+
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~~-ge~vlyvs~ee--~~~~l~~~~ 67 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKNF-GEKVLYVSFEE--PPEELIENM 67 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHH-T--EEEEESSS---HHHHHHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhhc-CCcEEEEEecC--CHHHHHHHH
Confidence 6899999999999999999776543320 23577776644 345555543
No 457
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.80 E-value=0.02 Score=55.67 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
+|+|.|++|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998766
No 458
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.79 E-value=0.038 Score=64.84 Aligned_cols=176 Identities=16% Similarity=0.182 Sum_probs=86.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHH-HHHhccCCeEEEEEEecC------------CCHHHHHHHHHHHhhhhccCCCch
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFE-AKKQNLFDQVIFVLASST------------ANVKRIQDEIADQLCLELCKGTES 121 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~-~~~~~~f~~~~wv~~~~~------------~~~~~~~~~i~~~l~~~~~~~~~~ 121 (839)
+.++++|+|+.|.||||+.+.+... ...+.. +++.+... .+..+-..+-++.+.. ..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G----~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~------~m 390 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSG----IPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSG------HM 390 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhC----CCccCCccccccchhheeeecChHhHHhhhhhHHHH------HH
Confidence 4478999999999999999998766 221111 01111110 0111111111111111 11
Q ss_pred HHHHHHHHHHHcCCcEEEEEeCCCCcc---cccc----ccccCCCCCCCceEEEEeCchhhhhhhcCccc--eEEccCCC
Q 003203 122 ERARTLFDRLWKENKILVILDDICTSI---DLVT----VGIPFGNAHRGCKILLASRYRDILVSEMHSQY--NYCVSVLN 192 (839)
Q Consensus 122 ~~~~~~~~~l~~~~~~LlVlDdv~~~~---~~~~----l~~~l~~~~~~s~iivTtr~~~~~~~~~~~~~--~~~l~~L~ 192 (839)
.....+...+ ..+-|+++|..-... +-.. +...+. ..|+.+|+||....+......... ...+. ++
T Consensus 391 ~~~~~il~~~--~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d 465 (771)
T TIGR01069 391 KNISAILSKT--TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FD 465 (771)
T ss_pred HHHHHHHHhc--CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-Ec
Confidence 1122233332 478999999986431 1111 222221 257889999998876432221111 11111 11
Q ss_pred HHHHHHHHHHHh--CCCCCCcchHHHHHHHHHHhCCchhHHHHHHHHhcCCChhHHHHHHHHh
Q 003203 193 KEEAWSLFKKMV--GDYVEDSDLESIAIQVANECGGLPLAIVIVARALRNKPLSEWKGALLKL 253 (839)
Q Consensus 193 ~~ea~~Lf~~~~--~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~~~~~w~~~l~~l 253 (839)
. +... +..+. |... ...+-+|++++ |+|-.+..-|..+......++..++.++
T Consensus 466 ~-~~l~-p~Ykl~~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L 520 (771)
T TIGR01069 466 E-ETLS-PTYKLLKGIPG-----ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKL 520 (771)
T ss_pred C-CCCc-eEEEECCCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1 1111 01111 2111 22367788777 7888888777777666555666666665
No 459
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.77 E-value=0.14 Score=53.17 Aligned_cols=87 Identities=15% Similarity=0.265 Sum_probs=49.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEe-cCCCHHHHHHHHHHHhhhh-------ccCCCchH-----
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLAS-STANVKRIQDEIADQLCLE-------LCKGTESE----- 122 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 122 (839)
...++|+|..|.|||||++.+..... -+..+..-+. ...++.++..+....-+.. ..++....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 36789999999999999998876543 2333344443 3345555555554432211 11111111
Q ss_pred -HHHHHHHHHH-cCCcEEEEEeCCCC
Q 003203 123 -RARTLFDRLW-KENKILVILDDICT 146 (839)
Q Consensus 123 -~~~~~~~~l~-~~~~~LlVlDdv~~ 146 (839)
....+-+++. +++.+|+++||+-.
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccchH
Confidence 1222333332 47999999999854
No 460
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.77 E-value=0.25 Score=49.29 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=29.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS 96 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 96 (839)
-.++.|.|.+|+||||+|.+++.....+ -..++|++...
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~ 58 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEE 58 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccC
Confidence 3689999999999999999987654322 35678887643
No 461
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.77 E-value=0.025 Score=53.37 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.|.|.|++|+||||+|+.+.+++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999854
No 462
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.76 E-value=0.095 Score=54.53 Aligned_cols=40 Identities=25% Similarity=0.515 Sum_probs=30.7
Q ss_pred HHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 44 LCDILDWLT--SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 44 ~~~l~~~l~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
..++++.+. .....+|+|.|++|+||||++..+......+
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 344555543 3456899999999999999999999887654
No 463
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.75 E-value=0.076 Score=58.37 Aligned_cols=97 Identities=20% Similarity=0.213 Sum_probs=52.2
Q ss_pred HHHHHHHhcC--CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCC--C
Q 003203 44 LCDILDWLTS--PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKG--T 119 (839)
Q Consensus 44 ~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~ 119 (839)
+.++.+.|.. ..-.++.|.|.+|+|||||+.+++...... -..++|++..+ +..++... ++.++...... .
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~--g~kvlYvs~EE--s~~qi~~r-a~rlg~~~~~l~~~ 154 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKN--QMKVLYVSGEE--SLQQIKMR-AIRLGLPEPNLYVL 154 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECcC--CHHHHHHH-HHHcCCChHHeEEc
Confidence 3444444432 123689999999999999999998877543 23577776543 33333221 22333211100 0
Q ss_pred chHHHHHHHHHHHcCCcEEEEEeCCC
Q 003203 120 ESERARTLFDRLWKENKILVILDDIC 145 (839)
Q Consensus 120 ~~~~~~~~~~~l~~~~~~LlVlDdv~ 145 (839)
.......+...+.+.+.-++|+|.+.
T Consensus 155 ~e~~~~~I~~~i~~~~~~~vVIDSIq 180 (454)
T TIGR00416 155 SETNWEQICANIEEENPQACVIDSIQ 180 (454)
T ss_pred CCCCHHHHHHHHHhcCCcEEEEecch
Confidence 00112334444444455678888774
No 464
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.75 E-value=0.022 Score=52.50 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998764
No 465
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.74 E-value=0.29 Score=51.08 Aligned_cols=50 Identities=26% Similarity=0.397 Sum_probs=35.2
Q ss_pred HHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEe
Q 003203 44 LCDILDWLT--SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLAS 95 (839)
Q Consensus 44 ~~~l~~~l~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 95 (839)
..++.+.+. ..+..+|+|.|.+|+|||||+..+....+..+. .+.-+.+.
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~--~v~vi~~D 93 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGH--KVAVLAVD 93 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCC--eEEEEEeC
Confidence 344555554 355679999999999999999999988875422 34444443
No 466
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.74 E-value=0.15 Score=50.15 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.|.|.|++|+||||+|+.++.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999987664
No 467
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.74 E-value=0.052 Score=61.16 Aligned_cols=63 Identities=8% Similarity=0.127 Sum_probs=45.5
Q ss_pred CCccccchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC
Q 003203 33 GYKSFESRKSILCDILDWLT--SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST 97 (839)
Q Consensus 33 ~~~~fvgR~~~~~~l~~~l~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 97 (839)
....++|+...++++.+.+. ...-.-|.|+|..|+|||++|+.+.+.-... -...+.+++...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~--~~p~v~v~c~~~ 249 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRA--DKPLVYLNCAAL 249 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC--CCCeEEEEcccC
Confidence 45679999999988888876 2233567899999999999999998764321 223455665543
No 468
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.72 E-value=0.21 Score=54.21 Aligned_cols=90 Identities=16% Similarity=0.156 Sum_probs=51.1
Q ss_pred eeEEEEEcCCCCcHHHHH-HHHHHHHHHh-----ccCCeEEEEEEecCCC-HHHHHHHHHHHhh-hh-------ccCCCc
Q 003203 56 VNMIGVYGIGGVGKTALM-HEVLFEAKKQ-----NLFDQVIFVLASSTAN-VKRIQDEIADQLC-LE-------LCKGTE 120 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa-~~~~~~~~~~-----~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~-~~-------~~~~~~ 120 (839)
-+.++|.|..|+|||+|| ..+.++.... +.-..++++-+++... +.++.+. ++.-+ .+ ...+..
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~-L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRL-LRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHH-HHhcCCccceEEEEECCCCCH
Confidence 367899999999999997 6677765321 2335677887776543 3333222 22222 11 011111
Q ss_pred hH------HHHHHHHHHH-cCCcEEEEEeCCCC
Q 003203 121 SE------RARTLFDRLW-KENKILVILDDICT 146 (839)
Q Consensus 121 ~~------~~~~~~~~l~-~~~~~LlVlDdv~~ 146 (839)
.. ....+-+.+. +++.+|+|+||+-.
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 11 1222333332 47999999999864
No 469
>PRK13948 shikimate kinase; Provisional
Probab=94.71 E-value=0.07 Score=50.54 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=24.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..+.|+++|+.|+||||+++.+.++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999998874
No 470
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.71 E-value=0.046 Score=50.05 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 42 SILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 42 ~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
+.+++|.+++.+ ++++++|..|+|||||+..+..+.
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 446777887765 689999999999999999887543
No 471
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.66 E-value=0.049 Score=55.56 Aligned_cols=50 Identities=18% Similarity=0.361 Sum_probs=39.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIA 108 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 108 (839)
.-+++.|.|.+|+|||++|.++....... ...++||+..+. ..++.+...
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCC--HHHHHHHHH
Confidence 44799999999999999999999888754 778999988764 444444433
No 472
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.65 E-value=0.046 Score=50.80 Aligned_cols=113 Identities=14% Similarity=0.175 Sum_probs=58.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCC--HHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcC
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTAN--VKRIQDEIADQLCLELCKGTESERARTLFDRLWKE 134 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 134 (839)
.+++|+|..|.|||||++.+..... .....+++.-..... .... ...++.-..-.........+.+.+. .
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~qlS~G~~~r~~l~~~l~-~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEEL----RRRIGYVPQLSGGQRQRVALARALL-L 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHHH----HhceEEEeeCCHHHHHHHHHHHHHh-c
Confidence 6899999999999999999987553 244555553322111 1111 1111111111111112222334443 4
Q ss_pred CcEEEEEeCCCCc---cccccccccCCC-CCCCceEEEEeCchhhhh
Q 003203 135 NKILVILDDICTS---IDLVTVGIPFGN-AHRGCKILLASRYRDILV 177 (839)
Q Consensus 135 ~~~LlVlDdv~~~---~~~~~l~~~l~~-~~~~s~iivTtr~~~~~~ 177 (839)
.+-++++|+.-.. .....+...+.. ...+..++++|.+.....
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 6788999987532 222222222211 112467888888776654
No 473
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.64 E-value=0.26 Score=51.39 Aligned_cols=29 Identities=34% Similarity=0.442 Sum_probs=25.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
+..+++++|++|+||||++..++......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 45799999999999999999999888743
No 474
>PHA02774 E1; Provisional
Probab=94.63 E-value=0.074 Score=58.55 Aligned_cols=50 Identities=26% Similarity=0.375 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcC-CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEe
Q 003203 42 SILCDILDWLTS-PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLAS 95 (839)
Q Consensus 42 ~~~~~l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 95 (839)
.-+..+..++.. ++...+.|+|++|.|||.+|..+++-+. -..+.|++..
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~----G~vi~fvN~~ 469 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK----GKVISFVNSK 469 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEECc
Confidence 345566666653 3346899999999999999999988764 3356777753
No 475
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.63 E-value=0.026 Score=51.77 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
+|.|.|++|+||||+|+++.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 579999999999999999998764
No 476
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.61 E-value=0.069 Score=55.27 Aligned_cols=49 Identities=20% Similarity=0.348 Sum_probs=36.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDE 106 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 106 (839)
.+++.+.|.||+||||+|...+-.....+ ..+.-++..+..++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999888777553 44667766666666555443
No 477
>PRK14531 adenylate kinase; Provisional
Probab=94.61 E-value=0.11 Score=49.75 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
+.|.|.|++|+||||+|+.++..+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999988763
No 478
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.59 E-value=0.11 Score=55.97 Aligned_cols=88 Identities=15% Similarity=0.249 Sum_probs=49.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhc-------cCCCchH------
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLEL-------CKGTESE------ 122 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~~~------ 122 (839)
-..++|.|..|+|||||++.+....+ ....++...-.....+.++..+.+..-+.+. .++....
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 36889999999999999988776543 1223333333334445556555443321110 1111111
Q ss_pred HHHHHHHHHH-cCCcEEEEEeCCCC
Q 003203 123 RARTLFDRLW-KENKILVILDDICT 146 (839)
Q Consensus 123 ~~~~~~~~l~-~~~~~LlVlDdv~~ 146 (839)
....+-+++. +++++|+++||+-.
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 1222333332 47999999999854
No 479
>PRK13947 shikimate kinase; Provisional
Probab=94.59 E-value=0.029 Score=53.07 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.|.|+|++|+||||+|+.+++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998875
No 480
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.57 E-value=0.011 Score=54.97 Aligned_cols=71 Identities=21% Similarity=0.228 Sum_probs=48.6
Q ss_pred HHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhccccccc
Q 003203 619 ILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHME 693 (839)
Q Consensus 619 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~ 693 (839)
.+..+++++.|.+.+|..+.+..-..-.+..|+|+.|+|++|+.++ ......+..|++|+.|.|.+++...
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT----~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT----DGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec----hhHHHHHHHhhhhHHHHhcCchhhh
Confidence 4556677788888888887776544434456888888888888654 2233356677888888887766544
No 481
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.55 E-value=0.13 Score=49.04 Aligned_cols=124 Identities=17% Similarity=0.156 Sum_probs=64.3
Q ss_pred HHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHh-ccCCe--EEEEEEecCCCHHHHHHHH-HHHhhhhccCCCchH
Q 003203 47 ILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQ-NLFDQ--VIFVLASSTANVKRIQDEI-ADQLCLELCKGTESE 122 (839)
Q Consensus 47 l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~--~~wv~~~~~~~~~~~~~~i-~~~l~~~~~~~~~~~ 122 (839)
++..+-....--..|.|++|+||||+.+.+++-.... +.|-. +.-++-+.. ...-...+ ....+...+..+..-
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersE--Iag~~~gvpq~~~g~R~dVld~cp 205 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSE--IAGCLNGVPQHGRGRRMDVLDPCP 205 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccch--hhccccCCchhhhhhhhhhcccch
Confidence 5555555555557899999999999999998876643 12322 222222111 00000000 001111111111111
Q ss_pred HHHHHHHHHHcCCcEEEEEeCCCCccccccccccCCCCCCCceEEEEeCchhh
Q 003203 123 RARTLFDRLWKENKILVILDDICTSIDLVTVGIPFGNAHRGCKILLASRYRDI 175 (839)
Q Consensus 123 ~~~~~~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~~ 175 (839)
...-+......-.+=.||+|.+-..++..++..+ ...|.+++.|..-..+
T Consensus 206 k~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta---~~~GVkli~TaHG~~i 255 (308)
T COG3854 206 KAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTA---LHAGVKLITTAHGNGI 255 (308)
T ss_pred HHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHH---HhcCcEEEEeeccccH
Confidence 1122333333446778999999877665555444 3468888877765544
No 482
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.54 E-value=0.15 Score=50.72 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
+|+|.|.+|+||||+|+.+.+.++..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999887643
No 483
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.53 E-value=0.095 Score=48.29 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=19.1
Q ss_pred EEcCCCCcHHHHHHHHHHHHH
Q 003203 61 VYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 61 I~G~~GiGKTtLa~~~~~~~~ 81 (839)
|.|++|+||||+|+.++.+..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~ 21 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG 21 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT
T ss_pred CcCCCCCChHHHHHHHHHhcC
Confidence 689999999999999998764
No 484
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.53 E-value=0.057 Score=56.02 Aligned_cols=44 Identities=18% Similarity=0.367 Sum_probs=30.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKR 102 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 102 (839)
|++.+.|-||+||||+|...+-....++ ..+.-++..+..++.+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d 45 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSD 45 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHH
Confidence 6899999999999999999888877542 2355554444443333
No 485
>PRK14530 adenylate kinase; Provisional
Probab=94.50 E-value=0.033 Score=54.96 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
+.|+|+|++|+||||+|+.++..+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987764
No 486
>PLN02165 adenylate isopentenyltransferase
Probab=94.49 E-value=0.042 Score=56.68 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=25.5
Q ss_pred cCCCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 52 TSPNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 52 ~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.+....+++|+|+.|+||||||..++....
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 455556999999999999999999988754
No 487
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.47 E-value=0.12 Score=55.57 Aligned_cols=87 Identities=18% Similarity=0.296 Sum_probs=49.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC-CCHHHHHHHHHHHhhhh-------ccCCCchH-----
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST-ANVKRIQDEIADQLCLE-------LCKGTESE----- 122 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 122 (839)
-..++|+|..|+|||||++.+..... .+..+...+... ..+.++..+....=... ..++....
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 35789999999999999988876443 234444444443 33445544443321110 11111111
Q ss_pred -HHHHHHHHHH-cCCcEEEEEeCCCC
Q 003203 123 -RARTLFDRLW-KENKILVILDDICT 146 (839)
Q Consensus 123 -~~~~~~~~l~-~~~~~LlVlDdv~~ 146 (839)
.+..+-+++. +++++|+++||+-.
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 1223333332 47999999999854
No 488
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.47 E-value=0.12 Score=55.61 Aligned_cols=89 Identities=17% Similarity=0.352 Sum_probs=53.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC-CHHHHHHHHHHHhhhh-------ccCCCchHH---
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA-NVKRIQDEIADQLCLE-------LCKGTESER--- 123 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 123 (839)
+-..++|.|..|+|||||.+.+++... -+.++++-+++.. .+.++..+.+..-+.. ..++.....
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 346899999999999999999887653 3566777676543 4555554433221111 111111111
Q ss_pred ---HHHHHHHHH-cCCcEEEEEeCCCCc
Q 003203 124 ---ARTLFDRLW-KENKILVILDDICTS 147 (839)
Q Consensus 124 ---~~~~~~~l~-~~~~~LlVlDdv~~~ 147 (839)
...+-+++. +++++|+++||+-..
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 222333332 589999999998543
No 489
>COG3910 Predicted ATPase [General function prediction only]
Probab=94.47 E-value=0.33 Score=44.83 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=22.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 54 PNVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 54 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
-+.++-.|+|..|+||+||...++-..
T Consensus 35 F~apIT~i~GENGsGKSTLLEaiA~~~ 61 (233)
T COG3910 35 FRAPITFITGENGSGKSTLLEAIAAGM 61 (233)
T ss_pred ccCceEEEEcCCCccHHHHHHHHHhhc
Confidence 345789999999999999999887553
No 490
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.47 E-value=0.036 Score=52.89 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
+.++|+|.|++|+|||||++++..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35789999999999999999998764
No 491
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.46 E-value=0.037 Score=50.99 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEE
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIF 91 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w 91 (839)
+++|+|+.|+||||++.++....+.+ .+...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 57899999999999999999998754 3444333
No 492
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.43 E-value=0.024 Score=55.04 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=9.0
Q ss_pred CCCCCCCeeeeccCC
Q 003203 647 EGFPQLKHLQVQNNP 661 (839)
Q Consensus 647 ~~l~~L~~L~l~~~~ 661 (839)
+.+|-|..|.+.+|.
T Consensus 300 ~~~p~L~~le~ngNr 314 (388)
T COG5238 300 DAVPLLVDLERNGNR 314 (388)
T ss_pred cccHHHHHHHHccCc
Confidence 455666666666653
No 493
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.43 E-value=0.03 Score=50.89 Aligned_cols=20 Identities=35% Similarity=0.569 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVL 77 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~ 77 (839)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 494
>PLN02348 phosphoribulokinase
Probab=94.42 E-value=0.074 Score=56.01 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=29.2
Q ss_pred HHHHHHHhc-CCCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 44 LCDILDWLT-SPNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 44 ~~~l~~~l~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
...+..... .++..+|+|.|.+|+||||+|+.+.+.+.
T Consensus 36 ~~~~~~~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 36 ASSVVVALAADDGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred hHHHHHhhccCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 334444443 34567999999999999999999998875
No 495
>PRK14529 adenylate kinase; Provisional
Probab=94.38 E-value=0.12 Score=50.59 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHH
Q 003203 59 IGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 59 v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
|.|.|++|+||||+|+.++..+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78899999999999999998875
No 496
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.37 E-value=0.03 Score=50.53 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.++|+|+.|+|||||++.+.....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999987653
No 497
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.36 E-value=0.03 Score=53.46 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
++++|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999998754
No 498
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.33 E-value=0.039 Score=46.54 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVL 77 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~ 77 (839)
-..++|.|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999976
No 499
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.33 E-value=0.041 Score=50.85 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
..+++|.|++|+|||||++++..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3688999999999999999998776
No 500
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.19 Score=58.51 Aligned_cols=126 Identities=13% Similarity=0.071 Sum_probs=0.0
Q ss_pred ccccchHHHHHHHHHHhc------CC--CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHH
Q 003203 35 KSFESRKSILCDILDWLT------SP--NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDE 106 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~------~~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 106 (839)
..++|.++.+..|.+.+. .+ ....+.+.|+.|+|||-||++++.-+- +..+..+-+++|+-..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~F--gse~~~IriDmse~~e------- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVF--GSEENFIRLDMSEFQE------- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHc--CCccceEEechhhhhh-------
Q ss_pred HHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccccCCCCC-----------CCceEEEEe
Q 003203 107 IADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS--IDLVTVGIPFGNAH-----------RGCKILLAS 170 (839)
Q Consensus 107 i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~-----------~~s~iivTt 170 (839)
...+....+.-...+...++-+.+......+|++|||+.. +....+...+..+. .++-||+|+
T Consensus 633 -vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTs 708 (898)
T KOG1051|consen 633 -VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTS 708 (898)
T ss_pred -hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEec
Done!