Query 003203
Match_columns 839
No_of_seqs 595 out of 4105
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 17:02:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.2E-45 7.6E-50 415.8 20.2 317 31-365 125-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 8.8E-38 3E-42 354.6 22.7 282 37-356 130-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 3.3E-36 1.1E-40 379.8 27.9 312 29-363 118-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 4E-34 1.4E-38 329.5 28.5 307 29-361 118-450 (591)
5 2z63_A TOLL-like receptor 4, v 99.9 2.2E-26 7.4E-31 264.9 27.1 397 374-798 19-523 (570)
6 3vq2_A TLR4, TOLL-like recepto 99.9 3.4E-26 1.2E-30 265.1 26.9 390 374-787 23-539 (606)
7 3t6q_A CD180 antigen; protein- 99.9 9.7E-26 3.3E-30 261.2 23.8 351 381-742 30-459 (606)
8 4ecn_A Leucine-rich repeat pro 99.9 2.2E-26 7.4E-31 270.0 17.8 110 427-537 444-586 (876)
9 1o6v_A Internalin A; bacterial 99.9 2.1E-25 7.2E-30 248.8 24.1 347 383-787 45-393 (466)
10 3rgz_A Protein brassinosteroid 99.9 5.7E-26 1.9E-30 269.1 19.9 368 383-788 177-558 (768)
11 4ecn_A Leucine-rich repeat pro 99.9 4.6E-26 1.6E-30 267.3 18.0 348 394-785 435-843 (876)
12 3t6q_A CD180 antigen; protein- 99.9 5.3E-25 1.8E-29 255.0 25.6 126 383-509 56-189 (606)
13 3vq2_A TLR4, TOLL-like recepto 99.9 2.4E-25 8.2E-30 257.9 22.5 151 386-539 13-168 (606)
14 4eco_A Uncharacterized protein 99.9 5.3E-26 1.8E-30 263.0 16.9 302 427-743 202-577 (636)
15 3rgz_A Protein brassinosteroid 99.9 9.8E-26 3.3E-30 267.1 17.4 72 702-787 652-723 (768)
16 2z81_A CD282 antigen, TOLL-lik 99.9 2.3E-25 7.9E-30 254.9 19.9 315 382-716 24-420 (549)
17 4fmz_A Internalin; leucine ric 99.9 1E-24 3.4E-29 233.8 22.4 302 383-779 43-344 (347)
18 2z7x_B TOLL-like receptor 1, v 99.9 2E-24 6.8E-29 245.2 25.7 143 387-536 3-150 (520)
19 4eco_A Uncharacterized protein 99.9 3.4E-25 1.2E-29 256.2 16.8 365 383-782 205-633 (636)
20 2z81_A CD282 antigen, TOLL-lik 99.9 2.2E-24 7.5E-29 246.8 23.3 155 382-538 48-210 (549)
21 3j0a_A TOLL-like receptor 5; m 99.9 3.1E-24 1E-28 257.0 24.4 164 371-537 13-187 (844)
22 4fmz_A Internalin; leucine ric 99.9 7.6E-24 2.6E-28 227.0 23.8 289 373-743 55-344 (347)
23 3v47_A TOLL-like receptor 5B a 99.9 1.5E-24 5.1E-29 241.9 18.8 369 382-785 28-412 (455)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1E-23 3.6E-28 241.2 25.1 360 387-779 34-508 (562)
25 1o6v_A Internalin A; bacterial 99.9 1.5E-23 5.2E-28 233.8 25.5 324 377-743 61-386 (466)
26 1ziw_A TOLL-like receptor 3; i 99.9 9.5E-24 3.2E-28 248.0 22.6 302 381-689 22-363 (680)
27 1ziw_A TOLL-like receptor 3; i 99.9 2.2E-23 7.5E-28 244.8 25.0 148 383-532 48-203 (680)
28 3o6n_A APL1; leucine-rich repe 99.9 1.2E-23 4E-28 229.2 20.8 306 402-779 41-350 (390)
29 2z63_A TOLL-like receptor 4, v 99.9 8E-24 2.7E-28 243.5 19.1 149 386-538 9-163 (570)
30 3v47_A TOLL-like receptor 5B a 99.9 6.2E-23 2.1E-27 228.8 23.4 364 387-798 13-400 (455)
31 3bz5_A Internalin-J, INLJ; leu 99.9 5.7E-23 1.9E-27 227.0 20.0 303 383-742 41-349 (457)
32 3oja_B Anopheles plasmodium-re 99.9 5.9E-23 2E-27 236.1 20.7 304 403-743 48-356 (597)
33 2id5_A Lingo-1, leucine rich r 99.9 6.2E-22 2.1E-26 221.9 25.2 311 387-742 14-330 (477)
34 2z7x_B TOLL-like receptor 1, v 99.9 2.8E-22 9.7E-27 227.4 22.7 367 382-780 19-480 (520)
35 2id5_A Lingo-1, leucine rich r 99.9 3.7E-22 1.3E-26 223.8 22.1 311 409-779 14-331 (477)
36 3o6n_A APL1; leucine-rich repe 99.9 1.3E-22 4.3E-27 221.0 16.6 302 382-743 43-350 (390)
37 4g8a_A TOLL-like receptor 4; l 99.9 3.1E-22 1.1E-26 233.6 20.2 144 381-526 49-199 (635)
38 3j0a_A TOLL-like receptor 5; m 99.9 1.4E-21 4.7E-26 234.0 26.0 271 476-781 266-560 (844)
39 3bz5_A Internalin-J, INLJ; leu 99.9 7E-22 2.4E-26 218.3 20.0 300 404-778 40-349 (457)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.5E-21 5.3E-26 223.2 22.2 149 404-571 29-181 (562)
41 3oja_B Anopheles plasmodium-re 99.9 6.8E-22 2.3E-26 227.3 16.9 298 383-717 50-356 (597)
42 1jl5_A Outer protein YOPM; leu 99.9 7.1E-21 2.4E-25 210.0 22.0 176 384-590 91-266 (454)
43 4fcg_A Uncharacterized protein 99.9 3.6E-21 1.2E-25 203.2 17.0 222 429-741 79-310 (328)
44 4g8a_A TOLL-like receptor 4; l 99.9 1.7E-20 6E-25 218.8 24.3 148 388-538 35-187 (635)
45 2ft3_A Biglycan; proteoglycan, 99.9 4.9E-21 1.7E-25 203.4 17.5 290 407-779 34-331 (332)
46 1jl5_A Outer protein YOPM; leu 99.9 2.4E-20 8.1E-25 205.8 22.6 330 385-787 72-417 (454)
47 1xku_A Decorin; proteoglycan, 99.8 3E-20 1E-24 197.2 21.5 290 407-778 32-329 (330)
48 1ogq_A PGIP-2, polygalacturona 99.8 1.2E-20 4.2E-25 198.0 14.5 246 384-693 50-305 (313)
49 4fcg_A Uncharacterized protein 99.8 4.5E-20 1.5E-24 194.8 15.7 172 384-570 81-264 (328)
50 2z80_A TOLL-like receptor 2, v 99.8 2.3E-19 7.8E-24 192.3 19.3 258 389-661 36-312 (353)
51 1ogq_A PGIP-2, polygalacturona 99.8 3.5E-20 1.2E-24 194.5 12.0 249 406-721 50-306 (313)
52 2ft3_A Biglycan; proteoglycan, 99.8 7E-19 2.4E-23 186.8 18.3 290 385-717 34-331 (332)
53 1xku_A Decorin; proteoglycan, 99.8 1.5E-18 5.2E-23 184.0 20.8 290 385-716 32-329 (330)
54 3g06_A SSPH2 (leucine-rich rep 99.8 2.3E-18 7.7E-23 195.7 22.3 255 385-717 41-295 (622)
55 3ogk_B Coronatine-insensitive 99.8 5.4E-20 1.9E-24 212.4 8.0 328 429-784 162-528 (592)
56 3zyi_A Leucine-rich repeat-con 99.8 1.1E-18 3.9E-23 193.5 18.3 241 386-661 56-301 (452)
57 3zyj_A Leucine-rich repeat-con 99.8 1E-18 3.6E-23 193.1 17.8 241 386-661 45-290 (440)
58 2z66_A Variable lymphocyte rec 99.8 7.1E-19 2.4E-23 184.5 14.7 174 388-574 11-190 (306)
59 1ozn_A Reticulon 4 receptor; N 99.8 1.4E-18 4.9E-23 180.1 16.6 146 388-536 15-165 (285)
60 1ozn_A Reticulon 4 receptor; N 99.8 1.1E-18 3.7E-23 181.0 15.4 182 381-575 29-217 (285)
61 2z80_A TOLL-like receptor 2, v 99.8 3.1E-18 1.1E-22 183.4 18.9 277 404-743 29-312 (353)
62 3g06_A SSPH2 (leucine-rich rep 99.8 4.8E-18 1.6E-22 193.0 20.6 257 407-745 41-297 (622)
63 1z7x_W Ribonuclease inhibitor; 99.8 7.1E-21 2.4E-25 212.6 -2.7 346 384-742 3-408 (461)
64 2p1m_B Transport inhibitor res 99.8 7.8E-20 2.7E-24 211.3 4.4 360 404-780 103-518 (594)
65 3o53_A Protein LRIM1, AGAP0063 99.8 7.4E-19 2.5E-23 185.0 8.9 245 404-695 32-278 (317)
66 3zyi_A Leucine-rich repeat-con 99.8 1.6E-17 5.4E-22 184.3 19.4 153 408-575 56-212 (452)
67 1z7x_W Ribonuclease inhibitor; 99.8 4.3E-20 1.5E-24 206.2 -1.8 347 383-743 27-438 (461)
68 3o53_A Protein LRIM1, AGAP0063 99.7 5.3E-19 1.8E-23 186.1 3.4 134 421-573 24-158 (317)
69 2z66_A Variable lymphocyte rec 99.7 1.1E-17 3.7E-22 175.4 12.8 241 409-717 10-259 (306)
70 3zyj_A Leucine-rich repeat-con 99.7 3.1E-17 1.1E-21 181.2 16.9 221 381-634 61-289 (440)
71 1p9a_G Platelet glycoprotein I 99.7 6.2E-17 2.1E-21 167.4 17.8 183 383-580 9-193 (290)
72 2o6q_A Variable lymphocyte rec 99.7 1.1E-16 3.9E-21 164.0 19.2 181 384-578 16-200 (270)
73 2z62_A TOLL-like receptor 4, v 99.7 1.8E-16 6.3E-21 163.2 20.1 177 389-577 12-195 (276)
74 1h6u_A Internalin H; cell adhe 99.7 1.2E-16 4E-21 167.1 18.7 188 383-591 40-227 (308)
75 3oja_A Leucine-rich immune mol 99.7 1.1E-17 3.6E-22 186.5 10.3 238 406-690 34-273 (487)
76 3ogk_B Coronatine-insensitive 99.7 3.1E-18 1.1E-22 197.6 6.1 140 599-746 376-526 (592)
77 2p1m_B Transport inhibitor res 99.7 2.8E-18 9.5E-23 198.2 4.5 325 426-780 100-493 (594)
78 2o6q_A Variable lymphocyte rec 99.7 4.5E-16 1.5E-20 159.6 19.1 179 381-572 34-218 (270)
79 2qen_A Walker-type ATPase; unk 99.7 1.1E-15 3.8E-20 163.6 21.7 297 27-357 4-349 (350)
80 2xwt_C Thyrotropin receptor; s 99.7 1.2E-16 4.1E-21 160.7 13.0 183 382-577 29-223 (239)
81 3rfs_A Internalin B, repeat mo 99.7 3.5E-16 1.2E-20 160.5 16.5 171 389-575 24-197 (272)
82 3m19_A Variable lymphocyte rec 99.7 8.7E-16 3E-20 155.5 18.5 177 384-574 14-194 (251)
83 1p9a_G Platelet glycoprotein I 99.7 3.4E-16 1.2E-20 161.8 15.3 159 404-578 8-167 (290)
84 1wwl_A Monocyte differentiatio 99.7 1.3E-17 4.3E-22 175.1 4.5 153 405-572 42-214 (312)
85 2z62_A TOLL-like receptor 4, v 99.7 4.1E-16 1.4E-20 160.6 15.3 184 381-578 25-219 (276)
86 1h6t_A Internalin B; cell adhe 99.7 9.3E-16 3.2E-20 158.7 17.7 173 383-576 45-217 (291)
87 1h6u_A Internalin H; cell adhe 99.7 1.8E-15 6.3E-20 158.0 19.5 178 379-577 58-235 (308)
88 3rfs_A Internalin B, repeat mo 99.7 1.6E-15 5.5E-20 155.5 18.5 176 382-572 39-218 (272)
89 2xwt_C Thyrotropin receptor; s 99.7 2.1E-16 7.3E-21 158.9 11.6 138 396-537 23-169 (239)
90 2fna_A Conserved hypothetical 99.6 6.7E-15 2.3E-19 158.0 22.1 294 28-356 6-356 (357)
91 1wwl_A Monocyte differentiatio 99.6 4.4E-16 1.5E-20 163.3 10.6 173 405-589 94-282 (312)
92 3oja_A Leucine-rich immune mol 99.6 5.5E-16 1.9E-20 172.7 12.0 185 383-590 33-223 (487)
93 2ast_B S-phase kinase-associat 99.6 3.3E-16 1.1E-20 166.7 9.3 134 425-569 62-205 (336)
94 1w5s_A Origin recognition comp 99.6 2.3E-14 8E-19 157.0 23.6 306 34-352 21-387 (412)
95 2ast_B S-phase kinase-associat 99.6 4.8E-16 1.7E-20 165.3 9.4 126 431-569 47-178 (336)
96 1m9s_A Internalin B; cell inva 99.6 4.8E-15 1.6E-19 168.2 16.0 173 383-576 42-214 (605)
97 1h6t_A Internalin B; cell adhe 99.6 5.4E-15 1.9E-19 152.9 14.8 181 390-591 30-210 (291)
98 4ay9_X Follicle-stimulating ho 99.6 7.9E-15 2.7E-19 156.4 14.7 239 434-741 12-255 (350)
99 3m19_A Variable lymphocyte rec 99.6 2.7E-14 9.2E-19 144.5 17.6 155 381-537 32-192 (251)
100 3e6j_A Variable lymphocyte rec 99.6 3.1E-14 1.1E-18 141.5 17.2 149 386-537 21-172 (229)
101 1xeu_A Internalin C; cellular 99.6 4.9E-15 1.7E-19 150.7 11.5 172 383-576 18-189 (263)
102 4ezg_A Putative uncharacterize 99.6 1.3E-14 4.3E-19 140.9 13.7 147 383-536 43-193 (197)
103 2o6s_A Variable lymphocyte rec 99.6 1.5E-14 5.1E-19 141.8 13.7 165 387-572 10-178 (208)
104 4ay9_X Follicle-stimulating ho 99.6 1.6E-14 5.3E-19 154.1 14.1 147 388-536 13-166 (350)
105 4ezg_A Putative uncharacterize 99.6 1.6E-14 5.6E-19 140.0 12.6 150 404-572 42-194 (197)
106 2v9t_B SLIT homolog 2 protein 99.6 4.2E-14 1.4E-18 139.6 15.4 148 387-537 14-165 (220)
107 2v70_A SLIT-2, SLIT homolog 2 99.6 3.7E-14 1.3E-18 140.0 14.9 149 387-537 14-166 (220)
108 4glp_A Monocyte differentiatio 99.6 7.8E-15 2.7E-19 153.7 10.4 151 385-537 92-264 (310)
109 1m9s_A Internalin B; cell inva 99.5 6E-15 2.1E-19 167.4 10.0 186 385-591 22-207 (605)
110 2ca6_A RAN GTPase-activating p 99.5 5.1E-15 1.7E-19 160.5 7.8 138 427-572 28-200 (386)
111 4glp_A Monocyte differentiatio 99.5 4.1E-14 1.4E-18 148.1 12.4 218 385-612 65-305 (310)
112 3cvr_A Invasion plasmid antige 99.5 2.7E-13 9.4E-18 151.9 17.1 184 385-615 60-244 (571)
113 2ell_A Acidic leucine-rich nuc 99.5 1.4E-13 4.8E-18 129.7 11.8 140 429-577 22-165 (168)
114 1xeu_A Internalin C; cellular 99.5 2.4E-13 8E-18 138.2 14.3 146 383-537 40-185 (263)
115 2xot_A Amphoterin-induced prot 99.5 1.3E-13 4.5E-18 147.5 12.8 172 387-572 21-202 (361)
116 2v9t_B SLIT homolog 2 protein 99.5 2.7E-13 9.2E-18 133.8 13.8 148 409-572 14-165 (220)
117 2ca6_A RAN GTPase-activating p 99.5 8.3E-15 2.9E-19 158.8 3.1 231 404-662 30-315 (386)
118 3goz_A Leucine-rich repeat-con 99.5 2.4E-14 8.3E-19 153.5 6.1 108 428-536 19-150 (362)
119 2v70_A SLIT-2, SLIT homolog 2 99.5 4.6E-13 1.6E-17 132.1 14.0 149 408-572 13-166 (220)
120 2xot_A Amphoterin-induced prot 99.5 3.5E-13 1.2E-17 144.2 14.0 162 373-537 29-202 (361)
121 3e6j_A Variable lymphocyte rec 99.4 7.9E-13 2.7E-17 131.4 14.5 150 407-573 20-173 (229)
122 2o6s_A Variable lymphocyte rec 99.4 5.3E-13 1.8E-17 130.7 12.9 152 381-541 25-182 (208)
123 2v1u_A Cell division control p 99.4 2.4E-12 8.3E-17 139.6 18.7 301 34-351 18-366 (387)
124 3goz_A Leucine-rich repeat-con 99.4 1.1E-13 3.8E-18 148.3 7.7 156 408-573 24-210 (362)
125 2qby_B CDC6 homolog 3, cell di 99.4 4.7E-12 1.6E-16 137.1 20.1 285 35-339 20-338 (384)
126 3cvr_A Invasion plasmid antige 99.4 1.6E-12 5.5E-17 145.7 16.2 159 383-573 79-244 (571)
127 2qby_A CDC6 homolog 1, cell di 99.4 4.6E-12 1.6E-16 137.3 19.3 301 34-351 19-363 (386)
128 2je0_A Acidic leucine-rich nuc 99.4 6E-13 2.1E-17 122.5 9.1 129 430-567 16-148 (149)
129 1dce_A Protein (RAB geranylger 99.4 4.6E-15 1.6E-19 167.4 -8.2 182 383-577 348-551 (567)
130 1a9n_A U2A', U2A'; complex (nu 99.4 1.3E-12 4.3E-17 124.1 9.5 134 428-571 16-152 (176)
131 2ell_A Acidic leucine-rich nuc 99.4 1.7E-12 5.9E-17 122.2 10.0 128 406-536 24-159 (168)
132 2je0_A Acidic leucine-rich nuc 99.4 9.2E-13 3.1E-17 121.3 7.9 124 406-532 17-148 (149)
133 2chg_A Replication factor C sm 99.4 9.6E-12 3.3E-16 123.5 15.9 191 29-235 11-204 (226)
134 4b8c_D Glucose-repressible alc 99.3 1.3E-12 4.6E-17 152.2 10.7 156 384-541 173-333 (727)
135 1njg_A DNA polymerase III subu 99.3 1.2E-11 4.2E-16 124.8 16.1 202 29-238 17-231 (250)
136 2wfh_A SLIT homolog 2 protein 99.3 9.2E-12 3.2E-16 119.7 13.3 123 410-537 14-139 (193)
137 1fnn_A CDC6P, cell division co 99.3 9.2E-11 3.2E-15 127.1 22.2 287 35-340 17-351 (389)
138 1w8a_A SLIT protein; signaling 99.3 6.5E-12 2.2E-16 120.9 11.3 104 432-536 30-138 (192)
139 1a9n_A U2A', U2A'; complex (nu 99.3 1.5E-12 5.1E-17 123.6 6.7 134 400-537 13-153 (176)
140 2wfh_A SLIT homolog 2 protein 99.3 2.2E-11 7.4E-16 117.1 12.4 125 434-572 13-139 (193)
141 1w8a_A SLIT protein; signaling 99.3 2.3E-11 8E-16 117.0 12.6 124 387-512 11-139 (192)
142 4b8c_D Glucose-repressible alc 99.3 2.5E-12 8.5E-17 149.9 5.6 144 391-537 208-354 (727)
143 2o6r_A Variable lymphocyte rec 99.2 1.1E-10 3.8E-15 110.7 13.9 106 431-537 28-137 (177)
144 1dce_A Protein (RAB geranylger 99.2 4.1E-11 1.4E-15 135.1 12.7 122 432-565 442-566 (567)
145 2o6r_A Variable lymphocyte rec 99.2 1.4E-10 4.9E-15 110.0 13.9 126 386-513 9-138 (177)
146 1ds9_A Outer arm dynein; leuci 99.2 6.2E-13 2.1E-17 129.0 -3.5 154 407-565 24-180 (198)
147 1sxj_B Activator 1 37 kDa subu 99.2 1.7E-10 5.7E-15 121.6 14.0 193 29-236 15-211 (323)
148 2r9u_A Variable lymphocyte rec 99.1 2.4E-10 8.2E-15 107.7 11.6 101 434-537 15-118 (174)
149 3g39_A Variable lymphocyte rec 99.1 2.8E-10 9.6E-15 106.8 11.7 102 433-537 11-115 (170)
150 1iqp_A RFCS; clamp loader, ext 99.0 6.6E-10 2.3E-14 117.2 11.8 195 28-238 18-215 (327)
151 1ds9_A Outer arm dynein; leuci 99.0 4.8E-12 1.6E-16 122.7 -4.5 128 433-573 25-154 (198)
152 2r9u_A Variable lymphocyte rec 99.0 1.3E-09 4.5E-14 102.6 10.9 80 431-510 33-116 (174)
153 3sb4_A Hypothetical leucine ri 99.0 1.1E-09 3.9E-14 115.2 11.4 160 405-580 100-318 (329)
154 2chq_A Replication factor C sm 99.0 4.5E-09 1.6E-13 110.3 14.8 191 27-235 9-204 (319)
155 3te6_A Regulatory protein SIR3 98.9 1.8E-08 6E-13 103.0 17.4 168 37-204 22-211 (318)
156 3g39_A Variable lymphocyte rec 98.9 4.7E-09 1.6E-13 98.4 11.7 80 431-510 30-113 (170)
157 1hqc_A RUVB; extended AAA-ATPa 98.9 2.8E-09 9.5E-14 112.1 11.2 178 31-238 8-214 (324)
158 3sb4_A Hypothetical leucine ri 98.9 1.5E-09 5E-14 114.4 7.8 284 430-775 24-328 (329)
159 1jbk_A CLPB protein; beta barr 98.8 8E-09 2.7E-13 99.4 9.6 155 31-200 18-194 (195)
160 1jr3_A DNA polymerase III subu 98.8 2.4E-08 8.3E-13 107.2 14.3 198 30-235 11-221 (373)
161 1sxj_D Activator 1 41 kDa subu 98.7 3.6E-08 1.2E-12 105.0 11.7 201 28-234 30-234 (353)
162 2ifg_A High affinity nerve gro 98.7 2.6E-08 8.8E-13 105.8 10.2 98 436-536 13-115 (347)
163 3un9_A NLR family member X1; l 98.7 1.4E-09 4.9E-14 115.8 0.3 134 431-572 101-252 (372)
164 3pvs_A Replication-associated 98.7 2.1E-07 7.3E-12 100.8 17.4 181 28-234 19-214 (447)
165 3h4m_A Proteasome-activating n 98.7 1.4E-07 4.7E-12 97.0 14.7 184 28-233 10-229 (285)
166 4fdw_A Leucine rich hypothetic 98.7 6.4E-07 2.2E-11 96.2 20.1 121 406-534 113-236 (401)
167 4fdw_A Leucine rich hypothetic 98.6 2.1E-07 7.2E-12 100.0 14.5 255 384-687 113-378 (401)
168 3bos_A Putative DNA replicatio 98.6 3E-08 1E-12 99.2 7.3 176 32-235 25-217 (242)
169 1d2n_A N-ethylmaleimide-sensit 98.6 6.2E-07 2.1E-11 91.2 16.8 194 35-253 33-261 (272)
170 1sxj_A Activator 1 95 kDa subu 98.6 1.5E-07 5E-12 105.0 12.5 214 28-252 32-273 (516)
171 2ifg_A High affinity nerve gro 98.6 9.8E-08 3.4E-12 101.3 10.2 97 412-510 14-114 (347)
172 1sxj_E Activator 1 40 kDa subu 98.6 1.4E-07 4.7E-12 100.5 11.3 202 27-234 6-236 (354)
173 2qz4_A Paraplegin; AAA+, SPG7, 98.6 1.1E-06 3.7E-11 89.0 17.3 184 32-235 3-222 (262)
174 3eie_A Vacuolar protein sortin 98.6 1.4E-06 4.8E-11 90.9 17.4 188 27-235 10-228 (322)
175 3un9_A NLR family member X1; l 98.6 5.4E-09 1.8E-13 111.3 -1.2 154 383-537 71-252 (372)
176 1xwi_A SKD1 protein; VPS4B, AA 98.6 3.6E-06 1.2E-10 87.4 20.2 187 30-236 7-224 (322)
177 4fs7_A Uncharacterized protein 98.5 1.9E-06 6.3E-11 93.0 18.2 57 404-463 69-126 (394)
178 3d8b_A Fidgetin-like protein 1 98.5 2E-06 6.8E-11 91.0 17.4 186 30-236 79-296 (357)
179 1sxj_C Activator 1 40 kDa subu 98.5 5.9E-07 2E-11 94.7 13.1 188 28-231 18-208 (340)
180 3pfi_A Holliday junction ATP-d 98.5 1.4E-06 4.9E-11 91.8 14.8 178 29-235 23-227 (338)
181 3syl_A Protein CBBX; photosynt 98.5 5.8E-07 2E-11 93.5 11.6 154 36-205 32-218 (309)
182 3u61_B DNA polymerase accessor 98.5 8.8E-07 3E-11 92.8 12.5 184 27-232 18-213 (324)
183 3uk6_A RUVB-like 2; hexameric 98.4 1.3E-06 4.4E-11 93.4 13.7 196 34-234 43-302 (368)
184 2qp9_X Vacuolar protein sortin 98.4 4.5E-06 1.5E-10 88.1 17.1 186 29-235 45-261 (355)
185 3vfd_A Spastin; ATPase, microt 98.4 8.8E-06 3E-10 87.3 19.7 186 29-235 109-326 (389)
186 2z4s_A Chromosomal replication 98.4 1.4E-06 4.9E-11 94.6 13.0 185 33-233 103-304 (440)
187 3b9p_A CG5977-PA, isoform A; A 98.4 7.6E-06 2.6E-10 84.4 17.9 186 29-235 15-233 (297)
188 1a5t_A Delta prime, HOLB; zinc 98.4 3.1E-06 1.1E-10 88.6 14.7 168 41-233 8-203 (334)
189 2p65_A Hypothetical protein PF 98.4 9E-07 3.1E-11 84.2 9.7 52 31-82 18-69 (187)
190 3pxg_A Negative regulator of g 98.4 1.8E-06 6.2E-11 94.7 13.1 153 31-205 176-339 (468)
191 2zan_A Vacuolar protein sortin 98.4 1E-05 3.4E-10 88.1 18.9 187 29-235 128-345 (444)
192 3cf0_A Transitional endoplasmi 98.4 5.2E-06 1.8E-10 85.5 15.4 179 30-230 10-223 (301)
193 2ra8_A Uncharacterized protein 98.4 3.6E-07 1.2E-11 96.2 6.5 138 425-571 166-319 (362)
194 4b4t_J 26S protease regulatory 98.4 5.3E-06 1.8E-10 86.8 15.1 178 30-229 143-355 (405)
195 4fs7_A Uncharacterized protein 98.3 2.1E-06 7.3E-11 92.6 10.5 65 419-485 59-126 (394)
196 4b4t_I 26S protease regulatory 98.3 2E-05 6.7E-10 82.7 17.2 178 29-228 176-388 (437)
197 1qvr_A CLPB protein; coiled co 98.3 3E-06 1E-10 100.6 12.4 159 31-204 166-345 (854)
198 1l8q_A Chromosomal replication 98.3 1.2E-05 4.2E-10 83.9 15.6 178 32-230 8-203 (324)
199 4b4t_M 26S protease regulatory 98.3 5E-06 1.7E-10 88.5 12.5 178 29-228 175-387 (434)
200 3e4g_A ATP synthase subunit S, 98.3 3.1E-07 1.1E-11 84.5 2.8 68 704-783 83-154 (176)
201 4b4t_H 26S protease regulatory 98.2 1.8E-05 6.3E-10 83.8 16.4 177 30-228 204-415 (467)
202 4b4t_L 26S protease subunit RP 98.2 3E-05 1E-09 82.6 17.3 178 29-228 175-387 (437)
203 3e4g_A ATP synthase subunit S, 98.2 1E-06 3.5E-11 81.0 4.1 83 432-514 62-154 (176)
204 1lv7_A FTSH; alpha/beta domain 98.1 3E-05 1E-09 77.9 14.9 181 30-232 7-222 (257)
205 4b4t_K 26S protease regulatory 98.1 3.8E-05 1.3E-09 81.7 15.7 177 30-228 167-379 (428)
206 3ec2_A DNA replication protein 98.1 5.6E-06 1.9E-10 78.1 8.4 125 32-173 7-143 (180)
207 3pxi_A Negative regulator of g 98.1 1.3E-05 4.4E-10 94.1 13.2 153 31-205 176-339 (758)
208 3n70_A Transport activator; si 98.1 1.5E-06 5.2E-11 78.6 3.5 111 36-173 2-116 (145)
209 2gno_A DNA polymerase III, gam 98.1 1.2E-05 4E-10 82.4 10.3 147 39-204 1-152 (305)
210 1r6b_X CLPA protein; AAA+, N-t 98.0 4.9E-05 1.7E-09 89.3 16.0 158 32-204 183-362 (758)
211 1io0_A Tropomodulin; LRR prote 98.0 2.4E-06 8.1E-11 81.0 3.5 110 426-536 31-163 (185)
212 3hu3_A Transitional endoplasmi 98.0 7.1E-05 2.4E-09 81.9 15.1 180 33-234 202-414 (489)
213 2r62_A Cell division protease 97.9 4.5E-06 1.5E-10 84.7 3.9 177 31-229 7-219 (268)
214 2w58_A DNAI, primosome compone 97.9 2.7E-05 9.4E-10 74.9 8.8 124 32-173 22-159 (202)
215 2ce7_A Cell division protein F 97.9 9.4E-05 3.2E-09 80.1 13.8 175 32-228 13-221 (476)
216 1in4_A RUVB, holliday junction 97.9 0.0003 1E-08 73.4 17.0 177 27-234 17-222 (334)
217 4gt6_A Cell surface protein; l 97.9 0.00097 3.3E-08 71.6 21.4 295 407-742 65-367 (394)
218 4fcw_A Chaperone protein CLPB; 97.9 4E-05 1.4E-09 79.5 10.0 106 35-147 17-131 (311)
219 2ra8_A Uncharacterized protein 97.8 1.1E-05 3.8E-10 84.8 5.2 128 404-537 170-320 (362)
220 1io0_A Tropomodulin; LRR prote 97.8 8.8E-06 3E-10 77.0 3.6 118 446-572 28-164 (185)
221 1ofh_A ATP-dependent HSL prote 97.8 0.00011 3.8E-09 76.1 11.2 47 35-81 15-75 (310)
222 3rw6_A Nuclear RNA export fact 97.7 5.7E-06 1.9E-10 82.3 0.9 16 474-489 194-209 (267)
223 3rw6_A Nuclear RNA export fact 97.7 3.1E-05 1.1E-09 77.0 5.5 78 428-505 167-257 (267)
224 2bjv_A PSP operon transcriptio 97.7 4.7E-05 1.6E-09 76.8 6.6 62 33-96 4-67 (265)
225 4gt6_A Cell surface protein; l 97.7 0.0018 6.1E-08 69.5 19.3 294 386-716 66-367 (394)
226 1ixz_A ATP-dependent metallopr 97.7 0.00072 2.5E-08 67.5 15.1 180 27-228 8-221 (254)
227 2c9o_A RUVB-like 1; hexameric 97.6 0.00056 1.9E-08 74.7 14.7 48 34-81 36-88 (456)
228 3cf2_A TER ATPase, transitiona 97.6 0.00015 5.3E-09 83.2 9.9 175 33-229 202-408 (806)
229 1iy2_A ATP-dependent metallopr 97.6 0.001 3.6E-08 67.3 15.3 178 29-228 34-245 (278)
230 1ojl_A Transcriptional regulat 97.5 0.0002 6.7E-09 73.6 9.0 46 35-80 2-49 (304)
231 3co5_A Putative two-component 97.5 9.5E-06 3.2E-10 73.1 -1.1 46 35-80 4-51 (143)
232 3m6a_A ATP-dependent protease 97.5 0.00088 3E-08 74.7 14.0 157 36-204 82-266 (543)
233 3t15_A Ribulose bisphosphate c 97.5 0.00038 1.3E-08 71.1 10.2 26 56-81 36-61 (293)
234 3pxi_A Negative regulator of g 97.5 0.00021 7.1E-09 83.8 9.0 149 35-204 491-675 (758)
235 2x8a_A Nuclear valosin-contain 97.3 0.002 7E-08 64.7 12.4 152 32-205 7-192 (274)
236 2dhr_A FTSH; AAA+ protein, hex 97.3 0.002 6.9E-08 70.2 13.2 177 30-228 26-236 (499)
237 1r6b_X CLPA protein; AAA+, N-t 97.2 0.0007 2.4E-08 79.5 9.0 57 35-96 458-523 (758)
238 1ypw_A Transitional endoplasmi 97.0 0.0015 5.2E-08 76.3 10.1 175 32-228 201-407 (806)
239 1qvr_A CLPB protein; coiled co 96.9 0.0018 6E-08 76.8 9.6 47 35-81 558-613 (854)
240 1um8_A ATP-dependent CLP prote 96.9 0.0073 2.5E-07 64.1 13.6 45 36-80 22-96 (376)
241 3io5_A Recombination and repai 96.9 0.0047 1.6E-07 61.9 11.0 85 58-147 30-123 (333)
242 1jr3_D DNA polymerase III, del 96.8 0.011 3.8E-07 61.8 14.0 163 49-233 11-183 (343)
243 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.0011 3.7E-08 66.8 5.3 70 57-146 124-193 (331)
244 3cf2_A TER ATPase, transitiona 96.7 0.001 3.5E-08 76.4 5.4 174 32-227 474-682 (806)
245 2qgz_A Helicase loader, putati 96.7 0.0021 7.2E-08 65.9 7.1 61 32-94 121-189 (308)
246 2kjq_A DNAA-related protein; s 96.7 0.0016 5.4E-08 58.7 5.3 39 55-95 35-73 (149)
247 3ice_A Transcription terminati 96.7 0.0056 1.9E-07 63.0 9.8 103 45-147 162-273 (422)
248 2cvh_A DNA repair and recombin 96.6 0.0071 2.4E-07 58.6 9.8 43 57-104 21-63 (220)
249 3hr8_A Protein RECA; alpha and 96.6 0.0081 2.8E-07 62.2 10.4 84 57-147 62-151 (356)
250 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0033 1.1E-07 61.7 7.1 46 57-106 24-69 (235)
251 1n0w_A DNA repair protein RAD5 96.5 0.0095 3.3E-07 58.7 10.4 89 57-146 25-130 (243)
252 1v5w_A DMC1, meiotic recombina 96.3 0.013 4.4E-07 61.1 9.7 56 56-112 122-181 (343)
253 2zr9_A Protein RECA, recombina 96.2 0.013 4.4E-07 61.0 9.4 83 57-146 62-150 (349)
254 1rz3_A Hypothetical protein rb 96.2 0.0056 1.9E-07 58.4 6.1 44 39-82 2-48 (201)
255 1sky_E F1-ATPase, F1-ATP synth 96.2 0.011 3.7E-07 63.1 8.6 89 57-146 152-256 (473)
256 1xp8_A RECA protein, recombina 96.1 0.016 5.6E-07 60.4 9.6 83 57-146 75-163 (366)
257 2z43_A DNA repair and recombin 96.1 0.019 6.4E-07 59.3 10.0 55 57-112 108-166 (324)
258 1u94_A RECA protein, recombina 96.1 0.018 6.3E-07 59.8 9.5 83 57-146 64-152 (356)
259 2i1q_A DNA repair and recombin 96.0 0.019 6.5E-07 59.4 9.6 55 57-112 99-167 (322)
260 1g8p_A Magnesium-chelatase 38 95.9 0.0039 1.3E-07 65.6 3.8 53 29-81 18-70 (350)
261 3c8u_A Fructokinase; YP_612366 95.9 0.008 2.7E-07 57.7 5.7 41 42-82 6-48 (208)
262 2px0_A Flagellar biosynthesis 95.9 0.022 7.4E-07 57.7 9.0 40 55-95 104-143 (296)
263 3lda_A DNA repair protein RAD5 95.9 0.015 5.3E-07 61.4 8.1 88 57-145 179-283 (400)
264 3bh0_A DNAB-like replicative h 95.6 0.058 2E-06 55.3 11.0 50 57-110 69-118 (315)
265 4h09_A Hypothetical leucine ri 95.6 0.049 1.7E-06 57.7 10.7 124 404-533 215-342 (379)
266 2r44_A Uncharacterized protein 95.5 0.0068 2.3E-07 63.1 3.8 153 34-206 26-200 (331)
267 3kb2_A SPBC2 prophage-derived 95.5 0.0079 2.7E-07 55.6 3.8 25 57-81 2-26 (173)
268 1qhx_A CPT, protein (chloramph 95.5 0.0075 2.6E-07 56.2 3.6 25 57-81 4-28 (178)
269 3dm5_A SRP54, signal recogniti 95.4 0.07 2.4E-06 56.7 11.1 28 56-83 100-127 (443)
270 3tqc_A Pantothenate kinase; bi 95.4 0.048 1.6E-06 55.6 9.2 43 39-81 71-117 (321)
271 2xxa_A Signal recognition part 95.3 0.14 4.8E-06 54.7 13.1 52 43-95 78-138 (433)
272 2ga8_A Hypothetical 39.9 kDa p 95.3 0.021 7.2E-07 58.5 6.3 45 38-82 2-50 (359)
273 3l0o_A Transcription terminati 95.3 0.0095 3.3E-07 61.2 3.7 51 45-96 163-215 (427)
274 2hf9_A Probable hydrogenase ni 95.3 0.015 5.1E-07 56.6 5.1 41 41-81 23-63 (226)
275 3vaa_A Shikimate kinase, SK; s 95.3 0.011 3.7E-07 56.3 4.0 26 56-81 25-50 (199)
276 2ehv_A Hypothetical protein PH 95.3 0.051 1.7E-06 53.7 9.0 23 57-79 31-53 (251)
277 4h09_A Hypothetical leucine ri 95.3 0.085 2.9E-06 55.8 11.4 115 404-524 238-356 (379)
278 2yvu_A Probable adenylyl-sulfa 95.3 0.013 4.6E-07 54.9 4.5 29 55-83 12-40 (186)
279 3trf_A Shikimate kinase, SK; a 95.3 0.011 3.7E-07 55.5 3.8 26 56-81 5-30 (185)
280 1fx0_B ATP synthase beta chain 95.2 0.047 1.6E-06 58.3 8.9 99 47-146 155-277 (498)
281 3lw7_A Adenylate kinase relate 95.2 0.01 3.4E-07 55.1 3.3 20 57-76 2-21 (179)
282 3nbx_X ATPase RAVA; AAA+ ATPas 95.1 0.011 3.6E-07 64.6 3.8 45 35-81 22-66 (500)
283 3uie_A Adenylyl-sulfate kinase 95.1 0.015 5.3E-07 55.2 4.4 29 53-81 22-50 (200)
284 1kgd_A CASK, peripheral plasma 95.1 0.012 4.2E-07 54.8 3.6 25 57-81 6-30 (180)
285 4a74_A DNA repair and recombin 95.1 0.055 1.9E-06 52.6 8.5 43 57-99 26-72 (231)
286 1xjc_A MOBB protein homolog; s 95.1 0.021 7.1E-07 52.0 4.9 29 55-83 3-31 (169)
287 1nks_A Adenylate kinase; therm 95.1 0.014 4.8E-07 55.1 4.0 26 57-82 2-27 (194)
288 1odf_A YGR205W, hypothetical 3 95.1 0.029 9.8E-07 56.6 6.4 29 54-82 29-57 (290)
289 3sr0_A Adenylate kinase; phosp 95.1 0.043 1.5E-06 52.1 7.3 24 58-81 2-25 (206)
290 1g5t_A COB(I)alamin adenosyltr 95.0 0.019 6.4E-07 53.4 4.5 114 56-175 28-165 (196)
291 1ly1_A Polynucleotide kinase; 95.0 0.013 4.5E-07 54.5 3.7 22 57-78 3-24 (181)
292 3fwy_A Light-independent proto 95.0 0.017 5.9E-07 59.0 4.7 41 54-96 46-86 (314)
293 3hws_A ATP-dependent CLP prote 95.0 0.021 7E-07 60.2 5.5 46 36-81 16-76 (363)
294 4eun_A Thermoresistant glucoki 95.0 0.015 5E-07 55.4 4.0 27 54-80 27-53 (200)
295 2dr3_A UPF0273 protein PH0284; 95.0 0.074 2.5E-06 52.3 9.3 38 57-96 24-61 (247)
296 1ex7_A Guanylate kinase; subst 95.0 0.011 3.9E-07 54.9 3.0 25 57-81 2-26 (186)
297 2ck3_D ATP synthase subunit be 95.0 0.07 2.4E-06 56.7 9.3 99 47-146 143-264 (482)
298 2wsm_A Hydrogenase expression/ 95.0 0.016 5.4E-07 56.1 4.1 42 40-81 14-55 (221)
299 2rhm_A Putative kinase; P-loop 94.9 0.017 5.9E-07 54.5 4.2 25 56-80 5-29 (193)
300 1pzn_A RAD51, DNA repair and r 94.9 0.043 1.5E-06 57.1 7.5 46 56-101 131-180 (349)
301 1zp6_A Hypothetical protein AT 94.9 0.014 4.9E-07 55.0 3.6 24 56-79 9-32 (191)
302 3t61_A Gluconokinase; PSI-biol 94.9 0.012 4.2E-07 56.0 3.1 25 56-80 18-42 (202)
303 1pgv_A TMD-1, tropomodulin TMD 94.9 0.014 4.9E-07 54.5 3.4 82 428-509 38-136 (197)
304 1kag_A SKI, shikimate kinase I 94.9 0.012 4.2E-07 54.4 3.0 25 57-81 5-29 (173)
305 1vma_A Cell division protein F 94.9 0.13 4.3E-06 52.2 10.7 52 41-94 81-140 (306)
306 1kht_A Adenylate kinase; phosp 94.9 0.016 5.5E-07 54.6 3.9 26 57-82 4-29 (192)
307 2ze6_A Isopentenyl transferase 94.9 0.016 5.6E-07 57.3 4.0 25 57-81 2-26 (253)
308 3iij_A Coilin-interacting nucl 94.9 0.014 4.9E-07 54.3 3.4 26 56-81 11-36 (180)
309 1zuh_A Shikimate kinase; alpha 94.9 0.017 5.7E-07 53.1 3.8 26 56-81 7-32 (168)
310 3kl4_A SRP54, signal recogniti 94.8 0.11 3.9E-06 55.1 10.6 37 56-94 97-133 (433)
311 1j8m_F SRP54, signal recogniti 94.8 0.17 5.8E-06 51.1 11.4 87 56-144 98-189 (297)
312 4a1f_A DNAB helicase, replicat 94.8 0.12 4.1E-06 53.0 10.2 62 43-110 35-96 (338)
313 2j37_W Signal recognition part 94.8 0.23 8E-06 53.9 13.0 38 55-94 100-137 (504)
314 1knq_A Gluconate kinase; ALFA/ 94.7 0.02 6.8E-07 53.1 4.0 25 56-80 8-32 (175)
315 1via_A Shikimate kinase; struc 94.7 0.015 5.2E-07 53.9 3.2 24 58-81 6-29 (175)
316 2b8t_A Thymidine kinase; deoxy 94.7 0.014 4.7E-07 56.1 2.8 110 56-174 12-127 (223)
317 3rfe_A Platelet glycoprotein I 94.7 0.047 1.6E-06 47.5 6.0 55 480-537 12-68 (130)
318 1tue_A Replication protein E1; 94.7 0.026 9E-07 52.7 4.5 39 43-81 44-83 (212)
319 3umf_A Adenylate kinase; rossm 94.7 0.022 7.6E-07 54.5 4.2 27 55-81 28-54 (217)
320 3tau_A Guanylate kinase, GMP k 94.7 0.019 6.6E-07 54.9 3.8 27 55-81 7-33 (208)
321 2qor_A Guanylate kinase; phosp 94.6 0.017 5.8E-07 55.1 3.2 26 56-81 12-37 (204)
322 3tlx_A Adenylate kinase 2; str 94.6 0.044 1.5E-06 53.8 6.2 27 54-80 27-53 (243)
323 2jaq_A Deoxyguanosine kinase; 94.5 0.021 7.3E-07 54.4 3.8 24 58-81 2-25 (205)
324 2c95_A Adenylate kinase 1; tra 94.5 0.022 7.6E-07 53.8 3.9 26 56-81 9-34 (196)
325 2iyv_A Shikimate kinase, SK; t 94.5 0.017 5.7E-07 54.1 3.0 25 57-81 3-27 (184)
326 1gvn_B Zeta; postsegregational 94.5 0.031 1.1E-06 56.4 5.1 26 55-80 32-57 (287)
327 1y63_A LMAJ004144AAA protein; 94.5 0.023 8E-07 53.1 3.9 24 56-79 10-33 (184)
328 3ney_A 55 kDa erythrocyte memb 94.5 0.022 7.6E-07 53.4 3.6 27 55-81 18-44 (197)
329 1ukz_A Uridylate kinase; trans 94.5 0.026 9E-07 53.7 4.3 26 55-80 14-39 (203)
330 3cm0_A Adenylate kinase; ATP-b 94.5 0.027 9.2E-07 52.7 4.3 26 56-81 4-29 (186)
331 1tev_A UMP-CMP kinase; ploop, 94.5 0.024 8.3E-07 53.5 4.0 24 57-80 4-27 (196)
332 3a00_A Guanylate kinase, GMP k 94.4 0.018 6E-07 54.1 2.9 25 57-81 2-26 (186)
333 3tr0_A Guanylate kinase, GMP k 94.4 0.023 8E-07 54.2 3.8 24 57-80 8-31 (205)
334 2bdt_A BH3686; alpha-beta prot 94.4 0.023 7.9E-07 53.4 3.7 22 57-78 3-24 (189)
335 1e6c_A Shikimate kinase; phosp 94.4 0.02 6.8E-07 52.9 3.2 25 57-81 3-27 (173)
336 2bwj_A Adenylate kinase 5; pho 94.4 0.024 8E-07 53.8 3.7 25 57-81 13-37 (199)
337 1ye8_A Protein THEP1, hypothet 94.4 0.026 8.8E-07 52.3 3.8 25 58-82 2-26 (178)
338 3cmu_A Protein RECA, recombina 94.4 0.06 2E-06 67.7 8.0 83 56-145 1427-1515(2050)
339 3k1j_A LON protease, ATP-depen 94.3 0.022 7.6E-07 64.4 3.9 51 29-81 35-85 (604)
340 3e70_C DPA, signal recognition 94.3 0.3 1E-05 50.0 12.0 29 55-83 128-156 (328)
341 2plr_A DTMP kinase, probable t 94.3 0.027 9.2E-07 54.0 4.0 26 57-82 5-30 (213)
342 1cke_A CK, MSSA, protein (cyti 94.3 0.025 8.7E-07 54.9 3.8 25 57-81 6-30 (227)
343 3asz_A Uridine kinase; cytidin 94.3 0.03 1E-06 53.7 4.2 27 55-81 5-31 (211)
344 1ls1_A Signal recognition part 94.2 0.17 5.7E-06 51.2 9.8 37 56-94 98-134 (295)
345 1qf9_A UMP/CMP kinase, protein 94.2 0.029 9.8E-07 52.9 3.9 26 56-81 6-31 (194)
346 2cdn_A Adenylate kinase; phosp 94.2 0.032 1.1E-06 53.1 4.2 26 56-81 20-45 (201)
347 1uj2_A Uridine-cytidine kinase 94.2 0.027 9.3E-07 55.8 3.9 28 54-81 20-47 (252)
348 2pt5_A Shikimate kinase, SK; a 94.2 0.029 9.9E-07 51.5 3.8 24 58-81 2-25 (168)
349 2zts_A Putative uncharacterize 94.2 0.15 5.2E-06 50.1 9.4 48 57-107 31-78 (251)
350 2j41_A Guanylate kinase; GMP, 94.2 0.028 9.7E-07 53.6 3.8 24 57-80 7-30 (207)
351 1lvg_A Guanylate kinase, GMP k 94.2 0.024 8.2E-07 53.7 3.2 25 57-81 5-29 (198)
352 1uf9_A TT1252 protein; P-loop, 94.2 0.03 1E-06 53.3 3.9 26 54-79 6-31 (203)
353 3a4m_A L-seryl-tRNA(SEC) kinas 94.2 0.033 1.1E-06 55.5 4.3 27 56-82 4-30 (260)
354 2pbr_A DTMP kinase, thymidylat 94.1 0.031 1.1E-06 52.7 3.8 25 58-82 2-26 (195)
355 2bbw_A Adenylate kinase 4, AK4 94.1 0.031 1.1E-06 55.1 3.9 26 56-81 27-52 (246)
356 3jvv_A Twitching mobility prot 94.0 0.017 5.7E-07 60.2 1.8 111 57-176 124-234 (356)
357 1nn5_A Similar to deoxythymidy 94.0 0.036 1.2E-06 53.3 4.2 27 56-82 9-35 (215)
358 2vli_A Antibiotic resistance p 94.0 0.023 7.9E-07 53.0 2.7 25 57-81 6-30 (183)
359 4gp7_A Metallophosphoesterase; 94.0 0.026 8.9E-07 52.0 3.0 21 56-76 9-29 (171)
360 1np6_A Molybdopterin-guanine d 94.0 0.06 2.1E-06 49.5 5.4 27 56-82 6-32 (174)
361 3upu_A ATP-dependent DNA helic 94.0 0.1 3.4E-06 56.8 8.1 43 40-83 30-72 (459)
362 2wwf_A Thymidilate kinase, put 94.0 0.035 1.2E-06 53.3 4.0 32 56-88 10-41 (212)
363 1aky_A Adenylate kinase; ATP:A 94.0 0.035 1.2E-06 53.7 3.9 25 57-81 5-29 (220)
364 2if2_A Dephospho-COA kinase; a 94.0 0.029 1E-06 53.4 3.4 22 57-78 2-23 (204)
365 2grj_A Dephospho-COA kinase; T 93.9 0.034 1.2E-06 52.2 3.7 26 55-80 11-36 (192)
366 1gtv_A TMK, thymidylate kinase 93.9 0.021 7.3E-07 54.9 2.4 25 58-82 2-26 (214)
367 2f1r_A Molybdopterin-guanine d 93.9 0.034 1.2E-06 51.0 3.6 27 57-83 3-29 (171)
368 3fb4_A Adenylate kinase; psych 93.9 0.034 1.2E-06 53.5 3.8 23 58-80 2-24 (216)
369 2p5t_B PEZT; postsegregational 93.9 0.042 1.4E-06 54.4 4.5 26 56-81 32-57 (253)
370 2qt1_A Nicotinamide riboside k 93.9 0.035 1.2E-06 53.1 3.7 25 56-80 21-45 (207)
371 2z0h_A DTMP kinase, thymidylat 93.9 0.036 1.2E-06 52.4 3.8 25 58-82 2-26 (197)
372 1g41_A Heat shock protein HSLU 93.8 0.036 1.2E-06 59.1 3.9 47 35-81 15-75 (444)
373 3vr4_D V-type sodium ATPase su 93.8 0.073 2.5E-06 56.3 6.2 90 57-146 152-259 (465)
374 3aez_A Pantothenate kinase; tr 93.7 0.045 1.5E-06 55.8 4.5 29 54-82 88-116 (312)
375 1jjv_A Dephospho-COA kinase; P 93.7 0.035 1.2E-06 53.0 3.5 22 57-78 3-24 (206)
376 2c61_A A-type ATP synthase non 93.7 0.064 2.2E-06 57.1 5.6 89 57-145 153-259 (469)
377 1zak_A Adenylate kinase; ATP:A 93.7 0.035 1.2E-06 53.7 3.4 25 57-81 6-30 (222)
378 1znw_A Guanylate kinase, GMP k 93.7 0.036 1.2E-06 52.9 3.5 24 57-80 21-44 (207)
379 1zd8_A GTP:AMP phosphotransfer 93.7 0.033 1.1E-06 54.1 3.2 24 57-80 8-31 (227)
380 4e22_A Cytidylate kinase; P-lo 93.7 0.036 1.2E-06 54.8 3.5 26 56-81 27-52 (252)
381 1pgv_A TMD-1, tropomodulin TMD 93.6 0.045 1.5E-06 51.1 3.8 105 405-509 40-167 (197)
382 1rj9_A FTSY, signal recognitio 93.6 0.045 1.6E-06 55.5 4.2 28 55-82 101-128 (304)
383 2r6a_A DNAB helicase, replicat 93.6 0.39 1.3E-05 52.0 11.9 49 57-108 204-252 (454)
384 2jeo_A Uridine-cytidine kinase 93.6 0.048 1.6E-06 53.7 4.3 25 56-80 25-49 (245)
385 1htw_A HI0065; nucleotide-bind 93.6 0.048 1.6E-06 49.3 3.9 26 55-80 32-57 (158)
386 1m7g_A Adenylylsulfate kinase; 93.6 0.072 2.5E-06 51.0 5.4 28 54-81 23-50 (211)
387 3dl0_A Adenylate kinase; phosp 93.6 0.037 1.3E-06 53.3 3.4 23 58-80 2-24 (216)
388 1s96_A Guanylate kinase, GMP k 93.6 0.041 1.4E-06 52.9 3.6 26 56-81 16-41 (219)
389 2ffh_A Protein (FFH); SRP54, s 93.6 0.45 1.5E-05 50.4 11.9 37 56-94 98-134 (425)
390 3end_A Light-independent proto 93.6 0.099 3.4E-06 53.5 6.8 44 53-98 38-81 (307)
391 3rfe_A Platelet glycoprotein I 93.6 0.12 4.2E-06 44.8 6.3 51 435-487 12-66 (130)
392 1z6g_A Guanylate kinase; struc 93.6 0.035 1.2E-06 53.5 3.1 24 57-80 24-47 (218)
393 2q6t_A DNAB replication FORK h 93.5 0.34 1.2E-05 52.3 11.2 51 57-110 201-251 (444)
394 3p32_A Probable GTPase RV1496/ 93.5 0.11 3.9E-06 54.1 7.2 39 44-82 65-105 (355)
395 3gqb_B V-type ATP synthase bet 93.5 0.077 2.6E-06 56.0 5.7 90 57-146 148-262 (464)
396 2pez_A Bifunctional 3'-phospho 93.5 0.051 1.7E-06 50.4 4.0 27 56-82 5-31 (179)
397 2i3b_A HCR-ntpase, human cance 93.4 0.043 1.5E-06 51.3 3.4 25 57-81 2-26 (189)
398 3d3q_A TRNA delta(2)-isopenten 93.4 0.044 1.5E-06 56.0 3.7 25 57-81 8-32 (340)
399 3r20_A Cytidylate kinase; stru 93.4 0.049 1.7E-06 52.6 3.8 25 57-81 10-34 (233)
400 3nwj_A ATSK2; P loop, shikimat 93.3 0.043 1.5E-06 53.9 3.2 25 57-81 49-73 (250)
401 2xb4_A Adenylate kinase; ATP-b 93.2 0.054 1.8E-06 52.4 3.8 23 58-80 2-24 (223)
402 2ck3_A ATP synthase subunit al 93.2 0.26 8.8E-06 52.9 9.1 100 47-146 152-273 (510)
403 3be4_A Adenylate kinase; malar 93.1 0.054 1.9E-06 52.1 3.7 25 57-81 6-30 (217)
404 3ake_A Cytidylate kinase; CMP 93.1 0.056 1.9E-06 51.5 3.8 24 58-81 4-27 (208)
405 2v54_A DTMP kinase, thymidylat 93.1 0.051 1.7E-06 51.7 3.4 24 57-80 5-28 (204)
406 1e4v_A Adenylate kinase; trans 93.1 0.056 1.9E-06 51.9 3.7 23 58-80 2-24 (214)
407 4akg_A Glutathione S-transfera 93.0 0.2 6.8E-06 65.4 9.6 138 57-204 1268-1431(2695)
408 3b9q_A Chloroplast SRP recepto 93.0 0.069 2.4E-06 54.2 4.4 27 56-82 100-126 (302)
409 3exa_A TRNA delta(2)-isopenten 93.0 0.052 1.8E-06 54.5 3.3 25 56-80 3-27 (322)
410 2f6r_A COA synthase, bifunctio 93.0 0.059 2E-06 54.2 3.8 23 55-77 74-96 (281)
411 1cr0_A DNA primase/helicase; R 92.9 0.17 5.7E-06 51.4 7.3 49 57-108 36-84 (296)
412 3bgw_A DNAB-like replicative h 92.9 0.32 1.1E-05 52.3 9.7 49 57-109 198-246 (444)
413 3crm_A TRNA delta(2)-isopenten 92.9 0.061 2.1E-06 54.6 3.8 24 57-80 6-29 (323)
414 1a7j_A Phosphoribulokinase; tr 92.9 0.038 1.3E-06 55.8 2.3 27 55-81 4-30 (290)
415 2r8r_A Sensor protein; KDPD, P 92.8 0.16 5.3E-06 48.4 6.2 37 58-96 8-44 (228)
416 1vht_A Dephospho-COA kinase; s 92.8 0.069 2.4E-06 51.4 4.0 22 57-78 5-26 (218)
417 1ak2_A Adenylate kinase isoenz 92.8 0.065 2.2E-06 52.3 3.8 25 57-81 17-41 (233)
418 3vr4_A V-type sodium ATPase ca 92.8 0.22 7.6E-06 53.9 8.1 57 47-107 222-280 (600)
419 1sq5_A Pantothenate kinase; P- 92.7 0.13 4.3E-06 52.6 6.0 28 54-81 78-105 (308)
420 3cmw_A Protein RECA, recombina 92.7 0.21 7.1E-06 62.1 8.7 84 57-147 733-822 (1706)
421 2onk_A Molybdate/tungstate ABC 92.6 0.064 2.2E-06 52.3 3.4 24 57-80 25-48 (240)
422 3lnc_A Guanylate kinase, GMP k 92.6 0.042 1.4E-06 53.6 2.1 24 57-80 28-52 (231)
423 4eaq_A DTMP kinase, thymidylat 92.6 0.12 4.3E-06 50.0 5.4 28 55-82 25-52 (229)
424 3foz_A TRNA delta(2)-isopenten 92.6 0.088 3E-06 52.8 4.3 25 56-80 10-34 (316)
425 1zu4_A FTSY; GTPase, signal re 92.5 0.099 3.4E-06 53.5 4.8 37 56-94 105-141 (320)
426 1yrb_A ATP(GTP)binding protein 92.4 0.11 3.7E-06 51.7 4.9 26 56-81 14-39 (262)
427 3a8t_A Adenylate isopentenyltr 92.4 0.055 1.9E-06 55.1 2.7 25 56-80 40-64 (339)
428 3mfy_A V-type ATP synthase alp 92.4 0.21 7.1E-06 53.9 7.2 57 47-107 217-275 (588)
429 3io3_A DEHA2D07832P; chaperone 92.4 0.15 5.2E-06 52.7 6.1 49 50-98 12-60 (348)
430 3b85_A Phosphate starvation-in 92.4 0.074 2.5E-06 50.6 3.4 23 57-79 23-45 (208)
431 2yhs_A FTSY, cell division pro 92.4 0.17 5.7E-06 54.4 6.4 27 56-82 293-319 (503)
432 3ld9_A DTMP kinase, thymidylat 92.3 0.21 7.3E-06 47.8 6.6 30 53-82 18-47 (223)
433 2eyu_A Twitching motility prot 92.3 0.15 5.2E-06 50.4 5.7 28 55-82 24-51 (261)
434 2og2_A Putative signal recogni 92.2 0.095 3.3E-06 54.3 4.3 27 56-82 157-183 (359)
435 3tif_A Uncharacterized ABC tra 92.2 0.067 2.3E-06 52.1 2.9 33 57-92 32-64 (235)
436 3cmw_A Protein RECA, recombina 92.2 0.33 1.1E-05 60.4 9.6 84 56-146 1431-1520(1706)
437 3iqw_A Tail-anchored protein t 92.1 0.16 5.4E-06 52.3 5.8 47 50-98 10-56 (334)
438 2pcj_A ABC transporter, lipopr 92.1 0.064 2.2E-06 51.8 2.7 23 57-79 31-53 (224)
439 1g8f_A Sulfate adenylyltransfe 92.1 0.15 5E-06 55.5 5.7 45 38-82 375-421 (511)
440 2qmh_A HPR kinase/phosphorylas 92.1 0.061 2.1E-06 49.9 2.3 24 57-80 35-58 (205)
441 2r9v_A ATP synthase subunit al 92.0 0.14 4.9E-06 54.7 5.3 86 57-146 176-278 (515)
442 1ltq_A Polynucleotide kinase; 92.0 0.091 3.1E-06 53.5 3.8 23 57-79 3-25 (301)
443 2orw_A Thymidine kinase; TMTK, 91.8 0.12 4.3E-06 48.0 4.2 27 57-83 4-30 (184)
444 2cbz_A Multidrug resistance-as 91.8 0.075 2.6E-06 51.8 2.8 24 57-80 32-55 (237)
445 3eph_A TRNA isopentenyltransfe 91.8 0.1 3.6E-06 54.4 3.9 25 57-81 3-27 (409)
446 1oix_A RAS-related protein RAB 91.8 0.095 3.2E-06 49.2 3.4 25 56-80 29-53 (191)
447 2qe7_A ATP synthase subunit al 91.7 0.15 5E-06 54.6 5.0 96 47-146 152-265 (502)
448 1q3t_A Cytidylate kinase; nucl 91.7 0.12 4E-06 50.5 4.1 26 55-80 15-40 (236)
449 1u0j_A DNA replication protein 91.7 0.18 6.1E-06 49.4 5.3 36 45-80 91-128 (267)
450 3gfo_A Cobalt import ATP-bindi 91.7 0.078 2.7E-06 52.9 2.8 23 57-79 35-57 (275)
451 4gzl_A RAS-related C3 botulinu 91.7 0.1 3.6E-06 49.5 3.6 36 44-79 18-53 (204)
452 3cmu_A Protein RECA, recombina 91.7 0.28 9.5E-06 61.8 8.1 83 57-146 384-472 (2050)
453 2d2e_A SUFC protein; ABC-ATPas 91.6 0.095 3.2E-06 51.6 3.3 23 57-79 30-52 (250)
454 1b0u_A Histidine permease; ABC 91.6 0.08 2.7E-06 52.5 2.7 24 57-80 33-56 (262)
455 1q57_A DNA primase/helicase; d 91.6 0.66 2.3E-05 51.0 10.4 51 57-110 243-293 (503)
456 4tmk_A Protein (thymidylate ki 91.5 0.29 1E-05 46.5 6.6 27 57-83 4-30 (213)
457 4g1u_C Hemin import ATP-bindin 91.5 0.082 2.8E-06 52.5 2.8 24 57-80 38-61 (266)
458 1sgw_A Putative ABC transporte 91.5 0.071 2.4E-06 50.9 2.2 24 57-80 36-59 (214)
459 2v9p_A Replication protein E1; 91.5 0.11 3.8E-06 52.4 3.7 26 55-80 125-150 (305)
460 3lv8_A DTMP kinase, thymidylat 91.5 0.28 9.6E-06 47.5 6.4 31 56-87 27-57 (236)
461 3zvl_A Bifunctional polynucleo 91.5 0.076 2.6E-06 56.8 2.6 27 54-80 256-282 (416)
462 1ji0_A ABC transporter; ATP bi 91.5 0.085 2.9E-06 51.6 2.8 24 57-80 33-56 (240)
463 1cp2_A CP2, nitrogenase iron p 91.5 0.23 7.9E-06 49.5 6.1 39 57-97 2-40 (269)
464 2dyk_A GTP-binding protein; GT 91.4 0.12 4.2E-06 46.6 3.7 23 57-79 2-24 (161)
465 2pze_A Cystic fibrosis transme 91.4 0.087 3E-06 51.1 2.7 24 57-80 35-58 (229)
466 2olj_A Amino acid ABC transpor 91.4 0.086 2.9E-06 52.2 2.7 24 57-80 51-74 (263)
467 4edh_A DTMP kinase, thymidylat 91.4 0.31 1.1E-05 46.4 6.6 27 57-83 7-33 (213)
468 1nlf_A Regulatory protein REPA 91.4 0.12 3.9E-06 52.1 3.8 25 57-81 31-55 (279)
469 1mv5_A LMRA, multidrug resista 91.4 0.093 3.2E-06 51.4 3.0 23 57-79 29-51 (243)
470 2zu0_C Probable ATP-dependent 91.4 0.1 3.5E-06 51.9 3.3 23 57-79 47-69 (267)
471 2ff7_A Alpha-hemolysin translo 91.3 0.089 3E-06 51.6 2.8 24 57-80 36-59 (247)
472 1g6h_A High-affinity branched- 91.3 0.089 3E-06 52.0 2.8 24 57-80 34-57 (257)
473 2ged_A SR-beta, signal recogni 91.3 0.21 7.1E-06 46.7 5.3 25 55-79 47-71 (193)
474 3cr8_A Sulfate adenylyltranfer 91.3 0.18 6.3E-06 55.5 5.6 45 38-82 349-395 (552)
475 2f9l_A RAB11B, member RAS onco 91.3 0.11 3.7E-06 49.1 3.3 23 57-79 6-28 (199)
476 2wji_A Ferrous iron transport 91.3 0.13 4.6E-06 46.7 3.8 22 57-78 4-25 (165)
477 1svm_A Large T antigen; AAA+ f 91.3 0.22 7.5E-06 52.0 5.8 27 54-80 167-193 (377)
478 2v3c_C SRP54, signal recogniti 91.3 0.089 3.1E-06 56.2 2.9 37 56-94 99-135 (432)
479 2ocp_A DGK, deoxyguanosine kin 91.2 0.14 4.6E-06 50.2 3.9 26 56-81 2-27 (241)
480 2afh_E Nitrogenase iron protei 91.1 0.28 9.5E-06 49.5 6.4 39 57-97 3-41 (289)
481 1vpl_A ABC transporter, ATP-bi 91.1 0.095 3.3E-06 51.7 2.7 23 57-79 42-64 (256)
482 2ghi_A Transport protein; mult 91.1 0.096 3.3E-06 51.8 2.8 23 57-79 47-69 (260)
483 2fz4_A DNA repair protein RAD2 91.1 0.77 2.6E-05 44.6 9.3 39 39-80 94-132 (237)
484 3oaa_A ATP synthase subunit al 91.1 0.86 2.9E-05 48.6 10.0 86 57-146 163-265 (513)
485 2qi9_C Vitamin B12 import ATP- 91.0 0.1 3.4E-06 51.2 2.7 24 57-80 27-50 (249)
486 2ixe_A Antigen peptide transpo 91.0 0.1 3.4E-06 52.1 2.8 24 57-80 46-69 (271)
487 2nq2_C Hypothetical ABC transp 90.8 0.11 3.6E-06 51.3 2.8 24 57-80 32-55 (253)
488 2yz2_A Putative ABC transporte 90.8 0.11 3.7E-06 51.7 2.8 23 57-79 34-56 (266)
489 2zej_A Dardarin, leucine-rich 90.7 0.12 4E-06 48.1 2.9 21 58-78 4-24 (184)
490 3gmt_A Adenylate kinase; ssgci 90.7 0.15 5.1E-06 48.9 3.6 24 58-81 10-33 (230)
491 2ihy_A ABC transporter, ATP-bi 90.7 0.11 3.7E-06 52.0 2.7 24 57-80 48-71 (279)
492 1nij_A Hypothetical protein YJ 90.7 0.13 4.3E-06 52.8 3.2 26 55-80 3-28 (318)
493 3sop_A Neuronal-specific septi 90.6 0.14 4.7E-06 51.0 3.4 24 58-81 4-27 (270)
494 2ce2_X GTPase HRAS; signaling 90.5 0.14 4.8E-06 46.3 3.2 22 58-79 5-26 (166)
495 3hjn_A DTMP kinase, thymidylat 90.5 0.46 1.6E-05 44.6 6.8 26 58-83 2-27 (197)
496 3f9v_A Minichromosome maintena 90.4 0.08 2.7E-06 59.4 1.6 46 35-80 295-351 (595)
497 2yv5_A YJEQ protein; hydrolase 90.4 0.23 7.8E-06 50.4 4.9 31 44-77 156-186 (302)
498 3gqb_A V-type ATP synthase alp 90.4 0.18 6.1E-06 54.4 4.2 56 47-106 211-268 (578)
499 1zj6_A ADP-ribosylation factor 90.4 0.27 9.1E-06 45.7 5.1 35 44-79 5-39 (187)
500 2www_A Methylmalonic aciduria 90.4 0.33 1.1E-05 50.4 6.2 28 55-82 73-100 (349)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.2e-45 Score=415.84 Aligned_cols=317 Identities=15% Similarity=0.097 Sum_probs=240.8
Q ss_pred CCCCccccchHHHHHHHHHHhcCC---CeeEEEEEcCCCCcHHHHHHHHHH--HHHHhccCCeEEEEEEecCC--CHHHH
Q 003203 31 NQGYKSFESRKSILCDILDWLTSP---NVNMIGVYGIGGVGKTALMHEVLF--EAKKQNLFDQVIFVLASSTA--NVKRI 103 (839)
Q Consensus 31 ~~~~~~fvgR~~~~~~l~~~l~~~---~~~~v~I~G~~GiGKTtLa~~~~~--~~~~~~~f~~~~wv~~~~~~--~~~~~ 103 (839)
|+.+..| ||++++++|.++|..+ +.++|+|+||||+||||||+++|+ +.+.+.+|+.++|+++++.+ ++..+
T Consensus 125 p~~~~~~-GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 203 (549)
T 2a5y_B 125 PKQMTCY-IREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDL 203 (549)
T ss_dssp BCCCCSC-CCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHH
T ss_pred CCCCccC-CchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHH
Confidence 3333335 9999999999999733 679999999999999999999998 46667889999999999875 78999
Q ss_pred HHHHHHHhhhhcc---C----C-CchHHHHHHHHHHHcCC-cEEEEEeCCCCccccccccccCCCCCCCceEEEEeCchh
Q 003203 104 QDEIADQLCLELC---K----G-TESERARTLFDRLWKEN-KILVILDDICTSIDLVTVGIPFGNAHRGCKILLASRYRD 174 (839)
Q Consensus 104 ~~~i~~~l~~~~~---~----~-~~~~~~~~~~~~l~~~~-~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~ 174 (839)
+++|+++++.... . . +.......+.+.+ .++ |+||||||||+.+++ .+.. .+||+||||||++.
T Consensus 204 ~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~ 276 (549)
T 2a5y_B 204 FTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNAL-IDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVE 276 (549)
T ss_dssp HHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHH-TTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGG
T ss_pred HHHHHHHHhcCcccccccccccccHHHHHHHHHHHH-cCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHH
Confidence 9999999986521 1 1 1122344555555 465 999999999998754 2211 27999999999999
Q ss_pred hhhhhcC-ccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHHHHhcCCChhHHHHHHHHh
Q 003203 175 ILVSEMH-SQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVARALRNKPLSEWKGALLKL 253 (839)
Q Consensus 175 ~~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~~~~~w~~~l~~l 253 (839)
++. .+. ....|++++|+++||++||.++++.....++.++++.+|+++|+|+||||+++|+.++.+. .+|...+...
T Consensus 277 v~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~ 354 (549)
T 2a5y_B 277 ISN-AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNK 354 (549)
T ss_dssp GGG-GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHH
T ss_pred HHH-HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHH
Confidence 987 343 4468999999999999999999865544467888999999999999999999999998774 2333333322
Q ss_pred hcccccchHHHHhhhhccccccchhHHHHHHH-----------hcccCCCCCCCcHHHHHHhhhcc--ccccccccHHHH
Q 003203 254 RSSAGKLDALVYSSIELSYNYLIDQVLKSAFL-----------LCGLLKHPYDASVMDLLKHGMGL--GLFEGIYTMQER 320 (839)
Q Consensus 254 ~~~~~~~~~~~~~~l~~sy~~L~~~~lk~~fl-----------~~a~fp~~~~~~~~~li~~w~~~--g~~~~~~~~~~~ 320 (839)
.+.. ....+..++.+||+.||++ +|.||+ |||+||+++.++ ++.|+|+ ||+.........
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~ 427 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLD 427 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCT
T ss_pred hhcc--cHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCH
Confidence 1111 1234778999999999998 799999 999999888888 7899999 888653211112
Q ss_pred HHHHHHHHHHHHhcccccCCC--CCCeEEeeehHHHHHHHhhccCce
Q 003203 321 RDRVYALVHILKDSCLLLDGR--TEDWFSMHDIVRNVAISIASRDHH 365 (839)
Q Consensus 321 ~~~~~~~l~~L~~~~ll~~~~--~~~~~~mH~lv~~~~~~~~~~e~~ 365 (839)
++... ++++|++++|++... ...+|+|||+||+||++++.+++.
T Consensus 428 ~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 428 DEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 33333 899999999998653 345799999999999999877653
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=8.8e-38 Score=354.59 Aligned_cols=282 Identities=18% Similarity=0.155 Sum_probs=224.8
Q ss_pred ccchHHHHHHHHHHhcC-CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCe-EEEEEEecCCCHHHHHHHHHHHhhhh
Q 003203 37 FESRKSILCDILDWLTS-PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQ-VIFVLASSTANVKRIQDEIADQLCLE 114 (839)
Q Consensus 37 fvgR~~~~~~l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~ 114 (839)
.|||++++++|.++|.+ ++.++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|++.++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 49999999999999974 56799999999999999999999998777778986 99999999999888888888765432
Q ss_pred cc-----CC---Cch----HHHHHHHHHH--HcCCcEEEEEeCCCCccccccccccCCCCCCCceEEEEeCchhhhhhhc
Q 003203 115 LC-----KG---TES----ERARTLFDRL--WKENKILVILDDICTSIDLVTVGIPFGNAHRGCKILLASRYRDILVSEM 180 (839)
Q Consensus 115 ~~-----~~---~~~----~~~~~~~~~l--~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~~~~~~~ 180 (839)
.. .. ... +....+.+.+ ..++|+||||||||+.++|+.+ .+||+||||||++.++. ..
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va~-~l 281 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTD-FL 281 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHHH-HH
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHHH-hc
Confidence 11 00 111 1222333333 1469999999999998888754 26999999999999875 22
Q ss_pred CccceEEcc------CCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHHHHhcCC--ChhHHHHHHHH
Q 003203 181 HSQYNYCVS------VLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVARALRNK--PLSEWKGALLK 252 (839)
Q Consensus 181 ~~~~~~~l~------~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~--~~~~w~~~l~~ 252 (839)
.....|+++ +|+.+||++||.+..+.. ..++..+| |+|+||||+++|+.|+.+ +.++|+..
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~--- 350 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV--- 350 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC---
T ss_pred CCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC---
Confidence 233456777 999999999999997543 12233343 999999999999999987 66778653
Q ss_pred hhcccccchHHHHhhhhccccccchhHH-HHHHHhcccCCCCCCCcHHHHHHhhhccccccccccHHHHHHHHHHHHHHH
Q 003203 253 LRSSAGKLDALVYSSIELSYNYLIDQVL-KSAFLLCGLLKHPYDASVMDLLKHGMGLGLFEGIYTMQERRDRVYALVHIL 331 (839)
Q Consensus 253 l~~~~~~~~~~~~~~l~~sy~~L~~~~l-k~~fl~~a~fp~~~~~~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~l~~L 331 (839)
....+..++.+||+.||++ . |+||++||+||+++.++.+.++.+|+++|. +.+..++++|
T Consensus 351 -------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-----------edAe~~L~eL 411 (1221)
T 1vt4_I 351 -------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-----------SDVMVVVNKL 411 (1221)
T ss_dssp -------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-----------HHHHHHHHHH
T ss_pred -------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-----------HHHHHHHHHH
Confidence 1356889999999999998 6 999999999999999999999999998871 2355689999
Q ss_pred HhcccccCCCCCCeEEeeehHHHHH
Q 003203 332 KDSCLLLDGRTEDWFSMHDIVRNVA 356 (839)
Q Consensus 332 ~~~~ll~~~~~~~~~~mH~lv~~~~ 356 (839)
+++||++..+...+|+|||++++++
T Consensus 412 vdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 412 HKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HhhCCEEEeCCCCEEEehHHHHHHh
Confidence 9999999865567899999999865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.3e-36 Score=379.76 Aligned_cols=312 Identities=20% Similarity=0.251 Sum_probs=245.4
Q ss_pred cCCCCCccccchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHHHH-hc-cCCeEEEEEEecCCC--HHH
Q 003203 29 RSNQGYKSFESRKSILCDILDWLT--SPNVNMIGVYGIGGVGKTALMHEVLFEAKK-QN-LFDQVIFVLASSTAN--VKR 102 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~~-~f~~~~wv~~~~~~~--~~~ 102 (839)
.+|++...||||++++++|.++|. +++.++|+|+||||+||||||+++|++.+. .. .++.++|+++++..+ ...
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 456777889999999999999995 466899999999999999999999998654 33 346788999988543 334
Q ss_pred HHHHHHHHhhhhccC----CCchHHHHHHHHHHHcCC--cEEEEEeCCCCccccccccccCCCCCCCceEEEEeCchhhh
Q 003203 103 IQDEIADQLCLELCK----GTESERARTLFDRLWKEN--KILVILDDICTSIDLVTVGIPFGNAHRGCKILLASRYRDIL 176 (839)
Q Consensus 103 ~~~~i~~~l~~~~~~----~~~~~~~~~~~~~l~~~~--~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~~~ 176 (839)
.+..++..+...... ....+.....++....++ |+||||||||+..+|+.+ ++|++||||||++.++
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHH
Confidence 466677776553321 122333333333333445 999999999998777643 5789999999999988
Q ss_pred hhhcCccceEEccC-CCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHHHHhcCCChhHHHHHHHHhhc
Q 003203 177 VSEMHSQYNYCVSV-LNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVARALRNKPLSEWKGALLKLRS 255 (839)
Q Consensus 177 ~~~~~~~~~~~l~~-L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~~~~~w~~~l~~l~~ 255 (839)
.........+.+++ |+++||++||...++.. .++.++++++|+++|+|+||||+++|++|+.+. ..|+.+++.+..
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~ 347 (1249)
T 3sfz_A 271 DSVMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQN 347 (1249)
T ss_dssp TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHS
T ss_pred HhhcCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhh
Confidence 53456677899996 99999999999998542 234456789999999999999999999998876 579999888833
Q ss_pred ccc--------cchHHHHhhhhccccccchhHHHHHHHhcccCCCCCCCcHHHHHHhhhccccccccccHHHHHHHHHHH
Q 003203 256 SAG--------KLDALVYSSIELSYNYLIDQVLKSAFLLCGLLKHPYDASVMDLLKHGMGLGLFEGIYTMQERRDRVYAL 327 (839)
Q Consensus 256 ~~~--------~~~~~~~~~l~~sy~~L~~~~lk~~fl~~a~fp~~~~~~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~ 327 (839)
... .....+..++.+||+.|+++ .|+||+|||+||+++.++.+.++.+|.+++ +.+.++
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~~ 414 (1249)
T 3sfz_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVEDI 414 (1249)
T ss_dssp CCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHHH
T ss_pred hhhhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH------------HHHHHH
Confidence 221 12356899999999999999 599999999999999999999999997642 345678
Q ss_pred HHHHHhcccccCCCCCC--eEEeeehHHHHHHHhhccC
Q 003203 328 VHILKDSCLLLDGRTED--WFSMHDIVRNVAISIASRD 363 (839)
Q Consensus 328 l~~L~~~~ll~~~~~~~--~~~mH~lv~~~~~~~~~~e 363 (839)
+++|++++|++...... +|+||+++|+|++..+.++
T Consensus 415 l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 415 LQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99999999998653322 6999999999999998765
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=4e-34 Score=329.55 Aligned_cols=307 Identities=21% Similarity=0.271 Sum_probs=232.4
Q ss_pred cCCCCCccccchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHHHH-hccC-CeEEEEEEecCCCHHHHH
Q 003203 29 RSNQGYKSFESRKSILCDILDWLT--SPNVNMIGVYGIGGVGKTALMHEVLFEAKK-QNLF-DQVIFVLASSTANVKRIQ 104 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~ 104 (839)
..|+.+..||||+.++++|.+++. .++.++|+|+||||+||||||.+++++... +.+| +.++|++++.. +...+.
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~ 196 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLL 196 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHH
Confidence 456677889999999999999997 356789999999999999999999988654 5678 47999999876 344444
Q ss_pred HHH---HHHhhhhc-----cCCCchHHHHHHHHHHHc-CCcEEEEEeCCCCccccccccccCCCCCCCceEEEEeCchhh
Q 003203 105 DEI---ADQLCLEL-----CKGTESERARTLFDRLWK-ENKILVILDDICTSIDLVTVGIPFGNAHRGCKILLASRYRDI 175 (839)
Q Consensus 105 ~~i---~~~l~~~~-----~~~~~~~~~~~~~~~l~~-~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~~ 175 (839)
..+ +..++... ...........+...+.. .+++||||||+|+...++.+ ++|++||||||++.+
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~ 269 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSV 269 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHH
Confidence 444 33443211 112223334444444443 27999999999987665532 568999999999987
Q ss_pred hhhhcCccceEEc---cCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHHHHhcCCChhHHHHHHHH
Q 003203 176 LVSEMHSQYNYCV---SVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVARALRNKPLSEWKGALLK 252 (839)
Q Consensus 176 ~~~~~~~~~~~~l---~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L~~~~~~~w~~~l~~ 252 (839)
+.. .. ...+++ ++|+.+|+++||.+.++.. .....+.+.+|+++|+|+|+||+++|+.++... ..|..+++.
T Consensus 270 ~~~-~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~ 344 (591)
T 1z6t_A 270 TDS-VM-GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQ 344 (591)
T ss_dssp GTT-CC-SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHH
T ss_pred HHh-cC-CCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHH
Confidence 752 22 344555 5899999999999998652 222345688999999999999999999998764 469888888
Q ss_pred hhccc--------ccchHHHHhhhhccccccchhHHHHHHHhcccCCCCCCCcHHHHHHhhhccccccccccHHHHHHHH
Q 003203 253 LRSSA--------GKLDALVYSSIELSYNYLIDQVLKSAFLLCGLLKHPYDASVMDLLKHGMGLGLFEGIYTMQERRDRV 324 (839)
Q Consensus 253 l~~~~--------~~~~~~~~~~l~~sy~~L~~~~lk~~fl~~a~fp~~~~~~~~~li~~w~~~g~~~~~~~~~~~~~~~ 324 (839)
+.... ......+..++..||+.||++ .|.||+++|+||++..++.+.+...|.+++ ..+
T Consensus 345 l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~------------~~~ 411 (591)
T 1z6t_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET------------EEV 411 (591)
T ss_dssp HHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH------------HHH
T ss_pred HHHhHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCH------------HHH
Confidence 74322 112356889999999999999 599999999999999999998999896531 235
Q ss_pred HHHHHHHHhcccccCCC--CCCeEEeeehHHHHHHHhhc
Q 003203 325 YALVHILKDSCLLLDGR--TEDWFSMHDIVRNVAISIAS 361 (839)
Q Consensus 325 ~~~l~~L~~~~ll~~~~--~~~~~~mH~lv~~~~~~~~~ 361 (839)
...++.|+++++++... ...+|+||+++|++++....
T Consensus 412 ~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 412 EDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 66899999999997542 23479999999999998843
No 5
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=2.2e-26 Score=264.92 Aligned_cols=397 Identities=16% Similarity=0.149 Sum_probs=252.3
Q ss_pred cccccccccccccceEEecCCCCCCCCCC--CCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccC-ccc
Q 003203 374 LVEWLNNDILKNCSAVFLNDIKTGVLPEG--LEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLP-PSV 450 (839)
Q Consensus 374 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~ 450 (839)
...+|. .....++.+++++|.+..++.. .++++|++|++++|. +..++...|.++++|++|++++|.+..+| ..+
T Consensus 19 l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (570)
T 2z63_A 19 FYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (570)
T ss_dssp CSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred ccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCcCCccCHhhh
Confidence 333443 4567899999999999877643 389999999999997 46677777899999999999999999775 689
Q ss_pred cCCCCCcEEEccCCCcCCCc--ccCCCCCCCEEEccCCCCCC--CchhhcCCCccCeEecCCCcCCCccCchhhcCcccc
Q 003203 451 HLLSNLQTLCLDQCVVGDIS--IIGNLKKLEILSLVDSDIER--LPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQL 526 (839)
Q Consensus 451 ~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L 526 (839)
+.+++|++|++++|.+..++ .++++++|++|++++|.++. +|..++++++|++|++++|. ++.+++..++.+++|
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQM 175 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTC
T ss_pred cCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhcc
Confidence 99999999999999988843 58999999999999999885 79999999999999999986 666666557888887
Q ss_pred ----CeEEccCCccccccccccc---------------------------------------------------------
Q 003203 527 ----EELYMGNTSVKWEFEGLNI--------------------------------------------------------- 545 (839)
Q Consensus 527 ----~~L~l~~~~~~~~~~~~~~--------------------------------------------------------- 545 (839)
+.|++++|.+....++...
T Consensus 176 ~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~ 255 (570)
T 2z63_A 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255 (570)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGG
T ss_pred chhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccc
Confidence 7888888766533221000
Q ss_pred -------------cccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCC---------------
Q 003203 546 -------------ERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWS--------------- 597 (839)
Q Consensus 546 -------------~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--------------- 597 (839)
.........+..+++|+.|+++++.+..+|..+...+|+.+.+..+.....+
T Consensus 256 ~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n 335 (570)
T 2z63_A 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN 335 (570)
T ss_dssp GSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESC
T ss_pred ccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCC
Confidence 0001122345667888888888888877776655446666666554322111
Q ss_pred --------CCCCCccEEEecccCCcch---HHHHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCccee
Q 003203 598 --------GKSDNTRALKLKLCSSIYL---DEILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCI 666 (839)
Q Consensus 598 --------~~~~~l~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i 666 (839)
..+++|+.|+++.+..... +.....+++|+.|++.++.... .... ...+++|++|++++|....
T Consensus 336 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~--~~~l~~L~~L~l~~n~l~~-- 410 (570)
T 2z63_A 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN--FLGLEQLEHLDFQHSNLKQ-- 410 (570)
T ss_dssp BSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEE--EETCTTCCEEECTTSEEES--
T ss_pred ccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-cccc--ccccCCCCEEEccCCcccc--
Confidence 3445566666655543332 2345556666666666543222 2211 2445666666666653211
Q ss_pred ecCCCcccccccccchhhhhcccccccccccccccccccCCCCEEEEecCCCcc-cccchhhhhcCCCccEEEEecccch
Q 003203 667 TDSTAWVCFDAFPLLESLVLHNLIHMEKICHSQLTAVSFCNLKIIKVRNCDRLK-NVFSFSIARGLPQLQTITVIKCKNV 745 (839)
Q Consensus 667 ~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~c~~L~-~l~~~~~~~~l~~L~~L~l~~c~~L 745 (839)
.........+++|+.|++++|.-.... +.....+++|++|++++|.-.. .+|. .+..+++|++|++++|. +
T Consensus 411 --~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~p~--~~~~l~~L~~L~l~~n~-l 482 (570)
T 2z63_A 411 --MSEFSVFLSLRNLIYLDISHTHTRVAF---NGIFNGLSSLEVLKMAGNSFQENFLPD--IFTELRNLTFLDLSQCQ-L 482 (570)
T ss_dssp --CTTSCTTTTCTTCCEEECTTSCCEECC---TTTTTTCTTCCEEECTTCEEGGGEECS--CCTTCTTCCEEECTTSC-C
T ss_pred --ccchhhhhcCCCCCEEeCcCCcccccc---hhhhhcCCcCcEEECcCCcCccccchh--hhhcccCCCEEECCCCc-c
Confidence 111113445666666666665422211 1113445666666666654221 2221 23556666666666662 2
Q ss_pred HHHhhcccCCccccCCCccccccccceeeccccccccccccccccchhhhhhh
Q 003203 746 EEIFMMERDGYVDCKEVNKIEFSQLRSLTLKFLPRLRSFYFQMEASATAKETH 798 (839)
Q Consensus 746 ~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~l~~~ 798 (839)
+.+. +..+..+++|++|++++| +++.++.......++++.+
T Consensus 483 ~~~~-----------~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 483 EQLS-----------PTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp CEEC-----------TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred ccCC-----------hhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEE
Confidence 2211 223344667777777766 4566655444444444443
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=3.4e-26 Score=265.07 Aligned_cols=390 Identities=16% Similarity=0.145 Sum_probs=237.5
Q ss_pred cccccccccccccceEEecCCCCCCCCC-CC-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccccc-Cccc
Q 003203 374 LVEWLNNDILKNCSAVFLNDIKTGVLPE-GL-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSL-PPSV 450 (839)
Q Consensus 374 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~ 450 (839)
....|. .+..+++.+++++|.+..++. .+ ++++|++|++++|.. ..+++..|.++++|++|++++|.+..+ |..+
T Consensus 23 l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 100 (606)
T 3vq2_A 23 LSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI-ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100 (606)
T ss_dssp CSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCCCCCCTTSS
T ss_pred cccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcc-cccCHHHhhchhhcCEeECCCCcccccChhhc
Confidence 334443 456889999999999988776 33 899999999999874 566666779999999999999999977 7889
Q ss_pred cCCCCCcEEEccCCCcCCC--cccCCCCCCCEEEccCCCCC--CCchhhcCCCccCeEecCCCcCCCccCchhhcCcccc
Q 003203 451 HLLSNLQTLCLDQCVVGDI--SIIGNLKKLEILSLVDSDIE--RLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQL 526 (839)
Q Consensus 451 ~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L 526 (839)
+++++|++|++++|.+... ..++++++|++|++++|.++ .+|..++++++|++|++++|. ++.+++..++.+++|
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLREN 179 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHC
T ss_pred CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhcc
Confidence 9999999999999998873 57999999999999999988 479999999999999999986 665555445555544
Q ss_pred C----eEEccCCcccccccccc----------------------------------------------------------
Q 003203 527 E----ELYMGNTSVKWEFEGLN---------------------------------------------------------- 544 (839)
Q Consensus 527 ~----~L~l~~~~~~~~~~~~~---------------------------------------------------------- 544 (839)
+ +|++++|.+....++..
T Consensus 180 ~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~ 259 (606)
T 3vq2_A 180 PQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259 (606)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGG
T ss_pred ccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhh
Confidence 3 45555554432111000
Q ss_pred -----------ccccccchh----------------------hhccCCCCCEEEEEeccccCCCccccccccceEEEEEc
Q 003203 545 -----------IERSNASLQ----------------------ELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIG 591 (839)
Q Consensus 545 -----------~~~~~~~l~----------------------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~ 591 (839)
.......+. .+..+++|+.|++++|....+|.. ..++|+.+++..+
T Consensus 260 ~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n 338 (606)
T 3vq2_A 260 DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMN 338 (606)
T ss_dssp GSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESC
T ss_pred hccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccC-CCCccceeeccCC
Confidence 000000011 233344555555555555555533 4456666666555
Q ss_pred CCC--CCCCCCCCccEEEecccCCcch---HHHHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCccee
Q 003203 592 DEW--DWSGKSDNTRALKLKLCSSIYL---DEILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCI 666 (839)
Q Consensus 592 ~~~--~~~~~~~~l~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i 666 (839)
... .....+++|+.|+++.+..... +.....+++|+.|++.++. +..... ....+++|+.|++++|......
T Consensus 339 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~--~~~~l~~L~~L~l~~n~l~~~~ 415 (606)
T 3vq2_A 339 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSA--NFMGLEELQHLDFQHSTLKRVT 415 (606)
T ss_dssp SSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECC--CCTTCTTCCEEECTTSEEESTT
T ss_pred cCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchh--hccCCCCCCeeECCCCccCCcc
Confidence 322 1234566777777776654433 3456667777777777654 222221 1244566666666655321110
Q ss_pred e-c-------------------CCCcccccccccchhhhhcccccccccccccccccccCCCCEEEEecCCCcccccchh
Q 003203 667 T-D-------------------STAWVCFDAFPLLESLVLHNLIHMEKICHSQLTAVSFCNLKIIKVRNCDRLKNVFSFS 726 (839)
Q Consensus 667 ~-~-------------------~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~ 726 (839)
+ . ......+..+++|+.|+++++.-...+. +.....+++|++|++++| .++..++.
T Consensus 416 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~Ls~n-~l~~~~~~- 491 (606)
T 3vq2_A 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL--SNVFANTTNLTFLDLSKC-QLEQISWG- 491 (606)
T ss_dssp TTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE--CSCCTTCTTCCEEECTTS-CCCEECTT-
T ss_pred ChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcch--HHhhccCCCCCEEECCCC-cCCccChh-
Confidence 0 0 0000122334444444444432111111 111334556666666655 34443331
Q ss_pred hhhcCCCccEEEEecccchHHHhhcccCCccccCCCccccccccceeeccccccccccccc
Q 003203 727 IARGLPQLQTITVIKCKNVEEIFMMERDGYVDCKEVNKIEFSQLRSLTLKFLPRLRSFYFQ 787 (839)
Q Consensus 727 ~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~ 787 (839)
.+..+++|++|++++|. ++.+. +..+..+++|++|+|++|. ++.+|..
T Consensus 492 ~~~~l~~L~~L~Ls~N~-l~~~~-----------~~~~~~l~~L~~L~l~~N~-l~~~p~~ 539 (606)
T 3vq2_A 492 VFDTLHRLQLLNMSHNN-LLFLD-----------SSHYNQLYSLSTLDCSFNR-IETSKGI 539 (606)
T ss_dssp TTTTCTTCCEEECCSSC-CSCEE-----------GGGTTTCTTCCEEECTTSC-CCCEESC
T ss_pred hhcccccCCEEECCCCc-CCCcC-----------HHHccCCCcCCEEECCCCc-CcccCHh
Confidence 23556666666666652 22221 2334457888888888885 7777776
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=9.7e-26 Score=261.24 Aligned_cols=351 Identities=18% Similarity=0.161 Sum_probs=219.9
Q ss_pred ccccccceEEecCCCCCCCCC-CC-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccccc-CccccCCCCCc
Q 003203 381 DILKNCSAVFLNDIKTGVLPE-GL-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSL-PPSVHLLSNLQ 457 (839)
Q Consensus 381 ~~~~~~~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~ 457 (839)
.+...++++++++|.+..++. .+ ++++|++|++++|.. ..+++..|.++++|++|++++|.+..+ |..++++++|+
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 108 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI-YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108 (606)
T ss_dssp TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCC
T ss_pred CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCcc-ceeChhhccCccccCeeeCCCCcccccChhhhccccccc
Confidence 456789999999999988754 34 899999999999975 455556679999999999999999865 77899999999
Q ss_pred EEEccCCCcCC--CcccCCCCCCCEEEccCCCCCCCc-hhhcCCCccCeEecCCCcCCCccCchhhcCccccC--eEEcc
Q 003203 458 TLCLDQCVVGD--ISIIGNLKKLEILSLVDSDIERLP-NEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLE--ELYMG 532 (839)
Q Consensus 458 ~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~--~L~l~ 532 (839)
+|++++|.+.. +..++++++|++|++++|.++.++ ..+..+++|++|++++|. ++.+++..++.+++|+ .|+++
T Consensus 109 ~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLN 187 (606)
T ss_dssp EEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECT
T ss_pred EeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecC
Confidence 99999999988 477899999999999999998762 334459999999999986 7777666688999999 88888
Q ss_pred CCccccccccccccc----------------------------------------------------------------c
Q 003203 533 NTSVKWEFEGLNIER----------------------------------------------------------------S 548 (839)
Q Consensus 533 ~~~~~~~~~~~~~~~----------------------------------------------------------------~ 548 (839)
+|.+....++..... .
T Consensus 188 ~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred CCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 887664333210000 0
Q ss_pred ccchhhhccCCCCCEEEEEeccccCCCccccc-cccceEEEEEcCCC----CCCCCCCCccEEEecccCCcc-hHH-HHH
Q 003203 549 NASLQELRHLSQLTTLEIQIQDAMILPKGLFS-KKLERYKIYIGDEW----DWSGKSDNTRALKLKLCSSIY-LDE-ILM 621 (839)
Q Consensus 549 ~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~l~l~~~~~~----~~~~~~~~l~~L~l~~~~~~~-~~~-~~~ 621 (839)
......++.+++|+.|++++|.+..+|..+.. ++|+.|++..+... .....+++|+.|++..+.... .+. .+.
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred ccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence 00011245566677777777766666655433 56666666544322 223445566666666554331 111 244
Q ss_pred HhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhccccccccccccccc
Q 003203 622 QLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICHSQLT 701 (839)
Q Consensus 622 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~ 701 (839)
.+++|+.|++.++.-............+++|++|++++|......+ ..+..+++|+.|+++++.-....+ +..
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~--~~~ 420 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT-----EAFKECPQLELLDLAFTRLKVKDA--QSP 420 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT-----TTTTTCTTCSEEECTTCCEECCTT--CCT
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH-----HHhcCCccCCeEECCCCcCCCccc--chh
Confidence 5566666666554332211001122455666666666654221111 133445566666665543211111 011
Q ss_pred ccccCCCCEEEEecCCCcccccchhhhhcCCCccEEEEecc
Q 003203 702 AVSFCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKC 742 (839)
Q Consensus 702 ~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c 742 (839)
...+++|++|++++|. ++..++ ..+..+++|++|++++|
T Consensus 421 ~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~L~~n 459 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSL-LDISSE-QLFDGLPALQHLNLQGN 459 (606)
T ss_dssp TTTCTTCCEEECTTCC-CBTTCT-TTTTTCTTCCEEECTTC
T ss_pred hhCcccCCEEECCCCc-cCCcCH-HHHhCCCCCCEEECCCC
Confidence 2345566666666543 333322 12345566666666555
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=2.2e-26 Score=270.05 Aligned_cols=110 Identities=16% Similarity=0.255 Sum_probs=64.0
Q ss_pred hcCCCCccEEEeCCCcccc------------------cCcccc--CCCCCcEEEccCCCcCC--CcccCCCCCCCEEEcc
Q 003203 427 FTGMSKLRGLALSEMQLLS------------------LPPSVH--LLSNLQTLCLDQCVVGD--ISIIGNLKKLEILSLV 484 (839)
Q Consensus 427 ~~~l~~L~~L~l~~~~~~~------------------lp~~~~--~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~ 484 (839)
++++++|++|+|++|.++. +|+.++ ++++|++|++++|.+.. |..++++++|++|+++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 3556666666666666665 666655 66666666666665443 4556666666666666
Q ss_pred CCC-CCC--CchhhcCCC-------ccCeEecCCCcCCCccCc-hhhcCccccCeEEccCCccc
Q 003203 485 DSD-IER--LPNEIGQLT-------QLRCLDLSFCRNLKVIPP-NVISKLTQLEELYMGNTSVK 537 (839)
Q Consensus 485 ~~~-l~~--lp~~i~~l~-------~L~~L~l~~~~~l~~~p~-~~l~~l~~L~~L~l~~~~~~ 537 (839)
+|+ ++. +|..+++++ +|++|++++|. +..+|. ..++++++|++|++++|.+.
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVR 586 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcc
Confidence 665 553 555555444 66666666654 445555 12566666666666666543
No 9
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=2.1e-25 Score=248.85 Aligned_cols=347 Identities=17% Similarity=0.179 Sum_probs=275.2
Q ss_pred ccccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEcc
Q 003203 383 LKNCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLD 462 (839)
Q Consensus 383 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 462 (839)
+.+++.+.+.++.+..+|....+++|++|++++|.. ..++. +.++++|++|++++|.+..++. ++++++|++|+++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l-~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL-TDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCcc-CCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence 567999999999999998766899999999999874 55665 6899999999999999998877 9999999999999
Q ss_pred CCCcCCCcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcccccccc
Q 003203 463 QCVVGDISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEG 542 (839)
Q Consensus 463 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 542 (839)
+|.+..++.++++++|++|++++|.+..+|. ++.+++|++|++++ .+..+++ ++++++|++|++++|.+..
T Consensus 121 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~~---- 191 (466)
T 1o6v_A 121 NNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVSD---- 191 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCCC----
T ss_pred CCCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCCC----
Confidence 9999987779999999999999999988874 88999999999974 3555554 8899999999999998641
Q ss_pred ccccccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCC--CCCCCCCCccEEEecccCCcchHHHH
Q 003203 543 LNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEW--DWSGKSDNTRALKLKLCSSIYLDEIL 620 (839)
Q Consensus 543 ~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~l~~L~l~~~~~~~~~~~~ 620 (839)
+..+..+++|+.|++++|.+...+......+|+.|++..+... .....+++|+.|+++.+......+ .
T Consensus 192 ---------~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~ 261 (466)
T 1o6v_A 192 ---------ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-L 261 (466)
T ss_dssp ---------CGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-G
T ss_pred ---------ChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-h
Confidence 2447889999999999998888776555688999988776533 345567899999999887655544 6
Q ss_pred HHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhcccccccccccccc
Q 003203 621 MQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICHSQL 700 (839)
Q Consensus 621 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~ 700 (839)
..+++|+.|++.++.-.. ... ...+++|+.|++++|.. ..++ ....+++|+.|++++|. +..+.
T Consensus 262 ~~l~~L~~L~l~~n~l~~-~~~---~~~l~~L~~L~L~~n~l-~~~~------~~~~l~~L~~L~L~~n~-l~~~~---- 325 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISN-ISP---LAGLTALTNLELNENQL-EDIS------PISNLKNLTYLTLYFNN-ISDIS---- 325 (466)
T ss_dssp TTCTTCSEEECCSSCCCC-CGG---GTTCTTCSEEECCSSCC-SCCG------GGGGCTTCSEEECCSSC-CSCCG----
T ss_pred hcCCCCCEEECCCCccCc-ccc---ccCCCccCeEEcCCCcc-cCch------hhcCCCCCCEEECcCCc-CCCch----
Confidence 778999999998865332 222 36789999999999853 3222 36789999999999874 44442
Q ss_pred cccccCCCCEEEEecCCCcccccchhhhhcCCCccEEEEecccchHHHhhcccCCccccCCCccccccccceeecccccc
Q 003203 701 TAVSFCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKCKNVEEIFMMERDGYVDCKEVNKIEFSQLRSLTLKFLPR 780 (839)
Q Consensus 701 ~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 780 (839)
+...+++|++|++++| .++.++ .+..+++|+.|++++|. ++.+.. +..+++|+.|++++|+
T Consensus 326 ~~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~-l~~~~~-------------~~~l~~L~~L~l~~n~- 386 (466)
T 1o6v_A 326 PVSSLTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQ-ISDLTP-------------LANLTRITQLGLNDQA- 386 (466)
T ss_dssp GGGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSC-CCBCGG-------------GTTCTTCCEEECCCEE-
T ss_pred hhccCccCCEeECCCC-ccCCch---hhccCCCCCEEeCCCCc-cCccch-------------hhcCCCCCEEeccCCc-
Confidence 2567899999999998 566663 35789999999999985 333221 3468999999999985
Q ss_pred ccccccc
Q 003203 781 LRSFYFQ 787 (839)
Q Consensus 781 L~~l~~~ 787 (839)
+..+|..
T Consensus 387 ~~~~p~~ 393 (466)
T 1o6v_A 387 WTNAPVN 393 (466)
T ss_dssp EECCCBC
T ss_pred ccCCchh
Confidence 4445543
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=5.7e-26 Score=269.11 Aligned_cols=368 Identities=17% Similarity=0.122 Sum_probs=281.9
Q ss_pred ccccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccc-ccCccccCCCCCcEEEc
Q 003203 383 LKNCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLL-SLPPSVHLLSNLQTLCL 461 (839)
Q Consensus 383 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l 461 (839)
..+++.+++++|.+........+++|++|++++|.....+|. ++++++|++|++++|.+. .+|..++.+++|++|++
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 254 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254 (768)
T ss_dssp CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEEC
Confidence 457888888888876555556888999999999887666665 688999999999999888 66888899999999999
Q ss_pred cCCCcCC-CcccCCCCCCCEEEccCCCCC-CCchhhcCC-CccCeEecCCCcCCCccCchhhcCccccCeEEccCCcccc
Q 003203 462 DQCVVGD-ISIIGNLKKLEILSLVDSDIE-RLPNEIGQL-TQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKW 538 (839)
Q Consensus 462 ~~~~~~~-~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l-~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~ 538 (839)
++|.+.. ++.. .+++|++|++++|.++ .+|..+..+ ++|++|++++|...+.+|.. ++++++|++|++++|.+..
T Consensus 255 s~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~ 332 (768)
T 3rgz_A 255 SSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSG 332 (768)
T ss_dssp CSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEE
T ss_pred CCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccC
Confidence 9998775 3333 8899999999999888 788888775 99999999998744466665 8999999999999998753
Q ss_pred ccccccccccccchhhhccCCCCCEEEEEecccc-CCCccccc-c-ccceEEEEEcCC----CCCCCC--CCCccEEEec
Q 003203 539 EFEGLNIERSNASLQELRHLSQLTTLEIQIQDAM-ILPKGLFS-K-KLERYKIYIGDE----WDWSGK--SDNTRALKLK 609 (839)
Q Consensus 539 ~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~-~~~~~~~~-~-~L~~l~l~~~~~----~~~~~~--~~~l~~L~l~ 609 (839)
.++ ...+..+++|+.|++++|.+. .+|..+.. . +|+.++++.+.. ..+... +++|+.|++.
T Consensus 333 ~ip----------~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~ 402 (768)
T 3rgz_A 333 ELP----------MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402 (768)
T ss_dssp ECC----------HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC
T ss_pred cCC----------HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECC
Confidence 322 234888999999999999887 66766554 3 899998876542 222222 6789999999
Q ss_pred ccCCcc-hHHHHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhcc
Q 003203 610 LCSSIY-LDEILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHN 688 (839)
Q Consensus 610 ~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~ 688 (839)
.|.... .+..+..+++|+.|++.++.-....+.. ...+++|+.|++++|.....++. .+..+++|+.|++++
T Consensus 403 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~-----~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS--LGSLSKLRDLKLWLNMLEGEIPQ-----ELMYVKTLETLILDF 475 (768)
T ss_dssp SSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG--GGGCTTCCEEECCSSCCCSCCCG-----GGGGCTTCCEEECCS
T ss_pred CCccccccCHHHhcCCCCCEEECcCCcccCcccHH--HhcCCCCCEEECCCCcccCcCCH-----HHcCCCCceEEEecC
Confidence 887653 3446778999999999987544333333 35689999999999976544443 567889999999999
Q ss_pred cccccccccccccccccCCCCEEEEecCCCcccccchhhhhcCCCccEEEEecccchHHHhhcccCCccccCCCcccccc
Q 003203 689 LIHMEKICHSQLTAVSFCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKCKNVEEIFMMERDGYVDCKEVNKIEFS 768 (839)
Q Consensus 689 ~~~l~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~l~ 768 (839)
+.-...++ .....+++|++|++++|.-...+|. .+..+++|++|++++|.-...+ +..+..++
T Consensus 476 N~l~~~~p---~~l~~l~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~------------p~~l~~l~ 538 (768)
T 3rgz_A 476 NDLTGEIP---SGLSNCTNLNWISLSNNRLTGEIPK--WIGRLENLAILKLSNNSFSGNI------------PAELGDCR 538 (768)
T ss_dssp SCCCSCCC---GGGGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCEEEC------------CGGGGGCT
T ss_pred CcccCcCC---HHHhcCCCCCEEEccCCccCCcCCh--HHhcCCCCCEEECCCCcccCcC------------CHHHcCCC
Confidence 76443442 2356789999999999874434543 4688999999999999543222 44566799
Q ss_pred ccceeecccccccccccccc
Q 003203 769 QLRSLTLKFLPRLRSFYFQM 788 (839)
Q Consensus 769 ~L~~L~l~~c~~L~~l~~~~ 788 (839)
+|+.|++++|+-...+|..+
T Consensus 539 ~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp TCCEEECCSSEEESBCCGGG
T ss_pred CCCEEECCCCccCCcCChHH
Confidence 99999999998777888764
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=4.6e-26 Score=267.30 Aligned_cols=348 Identities=13% Similarity=0.155 Sum_probs=250.6
Q ss_pred CCCCCCCCCC-CCCCccEEeecCCCCCC-----------------CCChhh-hcCCCCccEEEeCCCccc-ccCccccCC
Q 003203 394 IKTGVLPEGL-EYPQLDFFCMNSKDPFF-----------------KMPENF-FTGMSKLRGLALSEMQLL-SLPPSVHLL 453 (839)
Q Consensus 394 ~~~~~l~~~~-~~~~L~~L~l~~~~~~~-----------------~~~~~~-~~~l~~L~~L~l~~~~~~-~lp~~~~~l 453 (839)
|.+..+|..+ ++++|+.|++++|.... .+|..+ |.++++|++|+|++|.+. .+|..++++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 3444477766 78889999998888654 277765 448889999999888765 778888899
Q ss_pred CCCcEEEccCCC-cCC---CcccC-------CCCCCCEEEccCCCCCCCch--hhcCCCccCeEecCCCcCCCccCchhh
Q 003203 454 SNLQTLCLDQCV-VGD---ISIIG-------NLKKLEILSLVDSDIERLPN--EIGQLTQLRCLDLSFCRNLKVIPPNVI 520 (839)
Q Consensus 454 ~~L~~L~l~~~~-~~~---~~~~~-------~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~p~~~l 520 (839)
++|++|++++|. +.. |..++ .+++|++|++++|.++.+|. .++++++|++|++++|. ++.+| . +
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~-~ 591 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A-F 591 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-C
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-h-h
Confidence 999999999887 654 33344 44589999999998888888 88899999999998887 56888 3 8
Q ss_pred cCccccCeEEccCCccccccccccccccccchhhhccCCC-CCEEEEEeccccCCCccccc---cccceEEEEEcCCCCC
Q 003203 521 SKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQ-LTTLEIQIQDAMILPKGLFS---KKLERYKIYIGDEWDW 596 (839)
Q Consensus 521 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~-L~~L~l~~~~~~~~~~~~~~---~~L~~l~l~~~~~~~~ 596 (839)
+++++|+.|++++|.+. .++ ..+..+++ |+.|++++|.+..+|..+.. .+|+.|+++.+.....
T Consensus 592 ~~L~~L~~L~Ls~N~l~-~lp-----------~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIE-EIP-----------EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSE 659 (876)
T ss_dssp CTTSEESEEECCSSCCS-CCC-----------TTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred cCCCcceEEECcCCccc-cch-----------HHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCc
Confidence 88999999999888875 222 45777888 99999999888888865544 3378888776653221
Q ss_pred CC---------CCCCccEEEecccCCcchHH-HHHHhcccceEEeccccCchhhcccccc------CCCCCCCeeeeccC
Q 003203 597 SG---------KSDNTRALKLKLCSSIYLDE-ILMQLKGIEHLYLDEVPGIKNVLYDLER------EGFPQLKHLQVQNN 660 (839)
Q Consensus 597 ~~---------~~~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~------~~l~~L~~L~l~~~ 660 (839)
.. ..++|+.|+++.+.....+. ....+++|+.|+++++.-. .++..... ..+++|+.|+|++|
T Consensus 660 ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N 738 (876)
T 4ecn_A 660 GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFN 738 (876)
T ss_dssp SSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSS
T ss_pred cccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCC
Confidence 11 23489999999888776665 4457899999999886433 33322211 12349999999998
Q ss_pred CCcceeecCCCccccc--ccccchhhhhcccccccccccccccccccCCCCEEEEecCC-----Cc-ccccchhhhhcCC
Q 003203 661 PFILCITDSTAWVCFD--AFPLLESLVLHNLIHMEKICHSQLTAVSFCNLKIIKVRNCD-----RL-KNVFSFSIARGLP 732 (839)
Q Consensus 661 ~~l~~i~~~~~~~~~~--~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~c~-----~L-~~l~~~~~~~~l~ 732 (839)
. +..++. ... .+++|+.|+++++ .++.++ .....+++|+.|++++|+ ++ ..+|. .+.+++
T Consensus 739 ~-L~~lp~-----~l~~~~l~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~--~l~~L~ 806 (876)
T 4ecn_A 739 K-LTSLSD-----DFRATTLPYLSNMDVSYN-CFSSFP---TQPLNSSQLKAFGIRHQRDAEGNRILRQWPT--GITTCP 806 (876)
T ss_dssp C-CCCCCG-----GGSTTTCTTCCEEECCSS-CCSSCC---CGGGGCTTCCEEECCCCBCTTCCBCCCCCCT--TGGGCS
T ss_pred C-CccchH-----HhhhccCCCcCEEEeCCC-CCCccc---hhhhcCCCCCEEECCCCCCcccccccccChH--HHhcCC
Confidence 4 444543 333 7899999999986 455553 335688999999998733 23 33332 357899
Q ss_pred CccEEEEecccchHHHhhcccCCccccCCCccccccccceeeccccccccccc
Q 003203 733 QLQTITVIKCKNVEEIFMMERDGYVDCKEVNKIEFSQLRSLTLKFLPRLRSFY 785 (839)
Q Consensus 733 ~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~ 785 (839)
+|+.|++++|.- ..++ .. .+++|+.|+|++|+ +..+.
T Consensus 807 ~L~~L~Ls~N~L-~~Ip------------~~--l~~~L~~LdLs~N~-l~~i~ 843 (876)
T 4ecn_A 807 SLIQLQIGSNDI-RKVD------------EK--LTPQLYILDIADNP-NISID 843 (876)
T ss_dssp SCCEEECCSSCC-CBCC------------SC--CCSSSCEEECCSCT-TCEEE
T ss_pred CCCEEECCCCCC-CccC------------Hh--hcCCCCEEECCCCC-CCccC
Confidence 999999999853 5442 22 24799999999997 44443
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=5.3e-25 Score=255.03 Aligned_cols=126 Identities=20% Similarity=0.224 Sum_probs=88.3
Q ss_pred ccccceEEecCCCCCCC-CCCC-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccccc-CccccCCCCCcEE
Q 003203 383 LKNCSAVFLNDIKTGVL-PEGL-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSL-PPSVHLLSNLQTL 459 (839)
Q Consensus 383 ~~~~~~l~l~~~~~~~l-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L 459 (839)
..+++.+++++|.+..+ |..+ ++++|++|++++|.. ..+++..|+++++|++|++++|.+..+ |..++++++|++|
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L 134 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL-IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL 134 (606)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEE
T ss_pred CccceEEECCCCccceeChhhccCccccCeeeCCCCcc-cccChhhhcccccccEeeccccCcccCCcchhccCCcccEE
Confidence 55788888888887655 3333 788888888888764 344444567888888888888888766 5667788888888
Q ss_pred EccCCCcCCC--cccCCCCCCCEEEccCCCCCCC-chhhcCCCccC--eEecCCC
Q 003203 460 CLDQCVVGDI--SIIGNLKKLEILSLVDSDIERL-PNEIGQLTQLR--CLDLSFC 509 (839)
Q Consensus 460 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~--~L~l~~~ 509 (839)
++++|.+..+ +.+..+++|++|++++|.++.+ |..++.+++|+ +|++++|
T Consensus 135 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp ECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred ECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 8888877763 5555577888888887777755 34455666555 4554443
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=2.4e-25 Score=257.95 Aligned_cols=151 Identities=21% Similarity=0.214 Sum_probs=131.1
Q ss_pred cceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccccc-CccccCCCCCcEEEccCC
Q 003203 386 CSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSL-PPSVHLLSNLQTLCLDQC 464 (839)
Q Consensus 386 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~ 464 (839)
-+.+..+++.+..+|..+. +++++|++++|.. ..++...|.++++|++|++++|.+..+ |..++++++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPL-KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCceEccCCCcccCCCCCC-CCcCEEECCCCCc-CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 3568888888999998664 8899999999885 567766789999999999999999977 667899999999999999
Q ss_pred CcCC--CcccCCCCCCCEEEccCCCCCCCc-hhhcCCCccCeEecCCCcCCC-ccCchhhcCccccCeEEccCCccccc
Q 003203 465 VVGD--ISIIGNLKKLEILSLVDSDIERLP-NEIGQLTQLRCLDLSFCRNLK-VIPPNVISKLTQLEELYMGNTSVKWE 539 (839)
Q Consensus 465 ~~~~--~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~-~~p~~~l~~l~~L~~L~l~~~~~~~~ 539 (839)
.+.. +..++++++|++|++++|.++.+| ..++++++|++|++++|...+ .+|.. ++++++|++|++++|.+...
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceec
Confidence 9887 478999999999999999999886 679999999999999987333 46766 99999999999999987643
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=5.3e-26 Score=262.95 Aligned_cols=302 Identities=12% Similarity=0.152 Sum_probs=158.0
Q ss_pred hcCCCCccEEEeCCCcccc------------------cCcccc--CCCCCcEEEccCCCcCC--CcccCCCCCCCEEEcc
Q 003203 427 FTGMSKLRGLALSEMQLLS------------------LPPSVH--LLSNLQTLCLDQCVVGD--ISIIGNLKKLEILSLV 484 (839)
Q Consensus 427 ~~~l~~L~~L~l~~~~~~~------------------lp~~~~--~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~ 484 (839)
++++++|++|+|++|.++. +|+.++ ++++|++|++++|.+.. |..++++++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 4666777777777777665 677766 77777777777776544 4566677777777777
Q ss_pred CCC-CC--CCchhhcCC------CccCeEecCCCcCCCccCc--hhhcCccccCeEEccCCcccccccccc---------
Q 003203 485 DSD-IE--RLPNEIGQL------TQLRCLDLSFCRNLKVIPP--NVISKLTQLEELYMGNTSVKWEFEGLN--------- 544 (839)
Q Consensus 485 ~~~-l~--~lp~~i~~l------~~L~~L~l~~~~~l~~~p~--~~l~~l~~L~~L~l~~~~~~~~~~~~~--------- 544 (839)
+|+ ++ .+|..++++ ++|++|++++|. ++.+|. . ++++++|++|++++|.+...++...
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~-l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETS-LQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHH-HTTCTTCCEEECCSCCCEEECCCCEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhh-hccCCCCCEEeCcCCcCccchhhhCCCCCCCEEE
Confidence 775 65 366666665 677777777665 446665 4 6667777777777666542222000
Q ss_pred --ccccccchhhhccCCC-CCEEEEEeccccCCCccccc---cccceEEEEEcCCCC----CCC-------CCCCccEEE
Q 003203 545 --IERSNASLQELRHLSQ-LTTLEIQIQDAMILPKGLFS---KKLERYKIYIGDEWD----WSG-------KSDNTRALK 607 (839)
Q Consensus 545 --~~~~~~~l~~l~~l~~-L~~L~l~~~~~~~~~~~~~~---~~L~~l~l~~~~~~~----~~~-------~~~~l~~L~ 607 (839)
..........+..+++ |+.|++++|.+..+|..+.. .+|+.+++..+.... ... ..++|+.|+
T Consensus 360 L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~ 439 (636)
T 4eco_A 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439 (636)
T ss_dssp CCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEE
T ss_pred CCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEE
Confidence 0000012234555555 66666666666655554433 245555555443221 112 334566666
Q ss_pred ecccCCcchHH-HHHHhcccceEEeccccCchhhcccccc------CCCCCCCeeeeccCCCcceeecCCCccccc--cc
Q 003203 608 LKLCSSIYLDE-ILMQLKGIEHLYLDEVPGIKNVLYDLER------EGFPQLKHLQVQNNPFILCITDSTAWVCFD--AF 678 (839)
Q Consensus 608 l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~------~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~--~~ 678 (839)
++.+.....+. ....+++|+.|++.++.-. .+...... ..+++|++|++++|.. ..++. ... .+
T Consensus 440 Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~-----~~~~~~l 512 (636)
T 4eco_A 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSD-----DFRATTL 512 (636)
T ss_dssp CCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCC-CBCCG-----GGSTTTC
T ss_pred CcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcC-CccCh-----hhhhccC
Confidence 66555444333 3334566666666554322 22211100 1112666666666532 23331 222 55
Q ss_pred ccchhhhhcccccccccccccccccccCCCCEEEEecCC------CcccccchhhhhcCCCccEEEEeccc
Q 003203 679 PLLESLVLHNLIHMEKICHSQLTAVSFCNLKIIKVRNCD------RLKNVFSFSIARGLPQLQTITVIKCK 743 (839)
Q Consensus 679 p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~c~------~L~~l~~~~~~~~l~~L~~L~l~~c~ 743 (839)
++|+.|+++++. ++.++ .....+++|++|++++|. -...+|. .+..+++|++|++++|.
T Consensus 513 ~~L~~L~Ls~N~-l~~ip---~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 513 PYLVGIDLSYNS-FSKFP---TQPLNSSTLKGFGIRNQRDAQGNRTLREWPE--GITLCPSLTQLQIGSND 577 (636)
T ss_dssp TTCCEEECCSSC-CSSCC---CGGGGCSSCCEEECCSCBCTTCCBCCCCCCT--TGGGCSSCCEEECCSSC
T ss_pred CCcCEEECCCCC-CCCcC---hhhhcCCCCCEEECCCCcccccCcccccChH--HHhcCCCCCEEECCCCc
Confidence 666666666542 33332 123455666666664322 1222222 23556666666666653
No 15
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=9.8e-26 Score=267.09 Aligned_cols=72 Identities=14% Similarity=-0.010 Sum_probs=36.7
Q ss_pred ccccCCCCEEEEecCCCcccccchhhhhcCCCccEEEEecccchHHHhhcccCCccccCCCccccccccceeeccccccc
Q 003203 702 AVSFCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKCKNVEEIFMMERDGYVDCKEVNKIEFSQLRSLTLKFLPRL 781 (839)
Q Consensus 702 ~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L 781 (839)
.+.+++|+.|+++++.--..+|. .+..+++|+.|+++++.--..+ |..+..+++|++|++++++--
T Consensus 652 l~~l~~L~~L~Ls~N~l~g~ip~--~l~~L~~L~~LdLs~N~l~g~i------------p~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 652 IGSMPYLFILNLGHNDISGSIPD--EVGDLRGLNILDLSSNKLDGRI------------PQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCEECC------------CGGGGGCCCCSEEECCSSEEE
T ss_pred HhccccCCEEeCcCCccCCCCCh--HHhCCCCCCEEECCCCcccCcC------------ChHHhCCCCCCEEECcCCccc
Confidence 34455555555555432223322 2345555555555555321111 444556677777777777655
Q ss_pred cccccc
Q 003203 782 RSFYFQ 787 (839)
Q Consensus 782 ~~l~~~ 787 (839)
..+|..
T Consensus 718 g~iP~~ 723 (768)
T 3rgz_A 718 GPIPEM 723 (768)
T ss_dssp EECCSS
T ss_pred ccCCCc
Confidence 566654
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=2.3e-25 Score=254.91 Aligned_cols=315 Identities=16% Similarity=0.157 Sum_probs=198.4
Q ss_pred cccccceEEecCCCCCCCCC-CC-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCcc-ccCCCCCcE
Q 003203 382 ILKNCSAVFLNDIKTGVLPE-GL-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPS-VHLLSNLQT 458 (839)
Q Consensus 382 ~~~~~~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~ 458 (839)
....++++++++|.+..++. .+ .+++|++|++++|.. ..++...|.++++|++|++++|.+..+|+. ++++++|++
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCc-CccChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence 45678888888888876643 33 788889998888864 456656678888899999998888877665 888888999
Q ss_pred EEccCCCcCC---CcccCCCCCCCEEEccCCC-CCCCc-hhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccC
Q 003203 459 LCLDQCVVGD---ISIIGNLKKLEILSLVDSD-IERLP-NEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGN 533 (839)
Q Consensus 459 L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~-l~~lp-~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~ 533 (839)
|++++|.+.. +..++++++|++|++++|. +..+| ..+.++++|++|++++|...+..|.. ++.+++|++|++++
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHL 181 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEEC
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEeccc
Confidence 9998888764 3668888889999998886 56665 46888888899988887733334544 88888888888888
Q ss_pred CccccccccccccccccchhhhccCCCCCEEEEEeccccCCC---ccc--cccccceEE---------------------
Q 003203 534 TSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILP---KGL--FSKKLERYK--------------------- 587 (839)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~---~~~--~~~~L~~l~--------------------- 587 (839)
|...... ...+..+++|+.|++++|.+...+ ... ...+|+.+.
T Consensus 182 n~~~~~~-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 250 (549)
T 2z81_A 182 SESAFLL-----------EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250 (549)
T ss_dssp SBSTTHH-----------HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred Ccccccc-----------hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence 7653111 112356889999999998877642 111 113333333
Q ss_pred -------EEEcCCC----------CCCCCC-----------------------------CCccEEEecccCCcchHHH-H
Q 003203 588 -------IYIGDEW----------DWSGKS-----------------------------DNTRALKLKLCSSIYLDEI-L 620 (839)
Q Consensus 588 -------l~~~~~~----------~~~~~~-----------------------------~~l~~L~l~~~~~~~~~~~-~ 620 (839)
+..+... .....+ ++++.+++..+.....+.. .
T Consensus 251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~ 330 (549)
T 2z81_A 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330 (549)
T ss_dssp TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHH
T ss_pred ccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHH
Confidence 3322100 001112 3455555555444333432 3
Q ss_pred HHhcccceEEeccccCchhhccc-cccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhccccccccccccc
Q 003203 621 MQLKGIEHLYLDEVPGIKNVLYD-LEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICHSQ 699 (839)
Q Consensus 621 ~~l~~L~~L~l~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~ 699 (839)
..+++|+.|+++++.-....+.. ...+.+++|++|++++|.. ..++.. ......+++|+.|++++| .++.++.
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~--~~~~~~l~~L~~L~Ls~N-~l~~lp~-- 404 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL-RSMQKT--GEILLTLKNLTSLDISRN-TFHPMPD-- 404 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC-CCHHHH--HHHGGGCTTCCEEECTTC-CCCCCCS--
T ss_pred hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc-cccccc--hhhhhcCCCCCEEECCCC-CCccCCh--
Confidence 46778888888776544332211 1135567777777777742 222100 012455667777777665 3444432
Q ss_pred ccccccCCCCEEEEecC
Q 003203 700 LTAVSFCNLKIIKVRNC 716 (839)
Q Consensus 700 ~~~~~~~~L~~L~i~~c 716 (839)
....+++|++|++++|
T Consensus 405 -~~~~~~~L~~L~Ls~N 420 (549)
T 2z81_A 405 -SCQWPEKMRFLNLSST 420 (549)
T ss_dssp -CCCCCTTCCEEECTTS
T ss_pred -hhcccccccEEECCCC
Confidence 1334455556655554
No 17
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1e-24 Score=233.85 Aligned_cols=302 Identities=18% Similarity=0.240 Sum_probs=185.5
Q ss_pred ccccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEcc
Q 003203 383 LKNCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLD 462 (839)
Q Consensus 383 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 462 (839)
+++++.+.+.++.+..+|....+++|++|++++|.. ..++. +.++++|++|++++|.+..+| .+..+++|++|+++
T Consensus 43 l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i-~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQI-TDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN 118 (347)
T ss_dssp HTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECT
T ss_pred cccccEEEEeCCccccchhhhhcCCccEEEccCCcc-ccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECc
Confidence 456666677666666666544566666666666643 34443 456666666666666666554 45666666666666
Q ss_pred CCCcCCCcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcccccccc
Q 003203 463 QCVVGDISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEG 542 (839)
Q Consensus 463 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 542 (839)
+|.+..++.+.++++|++|++++|.....+..+..+++|++|++++|. +..++. ++.+++|++|++++|.+..
T Consensus 119 ~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~~---- 191 (347)
T 4fmz_A 119 EDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIED---- 191 (347)
T ss_dssp TSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCCC----
T ss_pred CCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCcccc----
Confidence 666666544666666666666666333333336666666666666654 444443 5566666666666665431
Q ss_pred ccccccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHHHHHH
Q 003203 543 LNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDEILMQ 622 (839)
Q Consensus 543 ~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~ 622 (839)
+..+..+++|+.|++++|.+...+. ...
T Consensus 192 ---------~~~~~~l~~L~~L~l~~n~l~~~~~-------------------------------------------~~~ 219 (347)
T 4fmz_A 192 ---------ISPLASLTSLHYFTAYVNQITDITP-------------------------------------------VAN 219 (347)
T ss_dssp ---------CGGGGGCTTCCEEECCSSCCCCCGG-------------------------------------------GGG
T ss_pred ---------cccccCCCccceeecccCCCCCCch-------------------------------------------hhc
Confidence 1125555666666666555443332 234
Q ss_pred hcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhcccccccccccccccc
Q 003203 623 LKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICHSQLTA 702 (839)
Q Consensus 623 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~ 702 (839)
+++|+.|++.++.-.. ... ...+++|++|++++|. +..+ .....+++|+.|++++| .++.++ ..
T Consensus 220 ~~~L~~L~l~~n~l~~-~~~---~~~l~~L~~L~l~~n~-l~~~------~~~~~l~~L~~L~l~~n-~l~~~~----~~ 283 (347)
T 4fmz_A 220 MTRLNSLKIGNNKITD-LSP---LANLSQLTWLEIGTNQ-ISDI------NAVKDLTKLKMLNVGSN-QISDIS----VL 283 (347)
T ss_dssp CTTCCEEECCSSCCCC-CGG---GTTCTTCCEEECCSSC-CCCC------GGGTTCTTCCEEECCSS-CCCCCG----GG
T ss_pred CCcCCEEEccCCccCC-Ccc---hhcCCCCCEEECCCCc-cCCC------hhHhcCCCcCEEEccCC-ccCCCh----hh
Confidence 5667777776654322 221 3567888888888874 2222 24567888888888886 455442 24
Q ss_pred cccCCCCEEEEecCCCcccccchhhhhcCCCccEEEEecccchHHHhhcccCCccccCCCccccccccceeeccccc
Q 003203 703 VSFCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKCKNVEEIFMMERDGYVDCKEVNKIEFSQLRSLTLKFLP 779 (839)
Q Consensus 703 ~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 779 (839)
..+++|+.|++++|. ++...+ ..+..+++|++|++++|+ ++.+.. +..+++|++|++++|+
T Consensus 284 ~~l~~L~~L~L~~n~-l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~-------------~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQ-LGNEDM-EVIGGLTNLTTLFLSQNH-ITDIRP-------------LASLSKMDSADFANQV 344 (347)
T ss_dssp GGCTTCSEEECCSSC-CCGGGH-HHHHTCTTCSEEECCSSS-CCCCGG-------------GGGCTTCSEESSSCC-
T ss_pred cCCCCCCEEECcCCc-CCCcCh-hHhhccccCCEEEccCCc-cccccC-------------hhhhhccceeehhhhc
Confidence 578899999999985 555544 345788999999999985 443321 3458999999999886
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=2e-24 Score=245.19 Aligned_cols=143 Identities=19% Similarity=0.168 Sum_probs=100.8
Q ss_pred ceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccccc-CccccCCCCCcEEEccCCC
Q 003203 387 SAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSL-PPSVHLLSNLQTLCLDQCV 465 (839)
Q Consensus 387 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~ 465 (839)
+.++++++.+..+|..+. ++|+.|++++|.. ..++...|.++++|++|++++|.+..+ |..++++++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYI-SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCC-CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcc-cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 467777777777776555 7777888877764 455555567777888888888777765 5677777888888888877
Q ss_pred cCCCcccCCCCCCCEEEccCCCCCC--CchhhcCCCccCeEecCCCcCCCccCchhhcCcccc--CeEEccCCcc
Q 003203 466 VGDISIIGNLKKLEILSLVDSDIER--LPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQL--EELYMGNTSV 536 (839)
Q Consensus 466 ~~~~~~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L--~~L~l~~~~~ 536 (839)
+..++.. .+++|++|++++|.++. +|..++++++|++|++++|. ++. ..++.+++| ++|++++|.+
T Consensus 81 l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 81 LVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred eeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccc
Confidence 7775444 77778888888877764 46777777888888877765 333 125566666 7777777665
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=3.4e-25 Score=256.18 Aligned_cols=365 Identities=13% Similarity=0.149 Sum_probs=248.2
Q ss_pred ccccceEEecCCCCCC------------------CCCCCC---CCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCC
Q 003203 383 LKNCSAVFLNDIKTGV------------------LPEGLE---YPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEM 441 (839)
Q Consensus 383 ~~~~~~l~l~~~~~~~------------------l~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 441 (839)
+.+++.+++++|.+.. +|..+. +++|++|++++|.....+|.. +.++++|++|++++|
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACN 283 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCC
Confidence 4567777777777766 776654 777888888777766667754 367778888888877
Q ss_pred c-cc--ccCccccCC------CCCcEEEccCCCcCCC-c--ccCCCCCCCEEEccCCCCC-CCchhhcCCCccCeEecCC
Q 003203 442 Q-LL--SLPPSVHLL------SNLQTLCLDQCVVGDI-S--IIGNLKKLEILSLVDSDIE-RLPNEIGQLTQLRCLDLSF 508 (839)
Q Consensus 442 ~-~~--~lp~~~~~l------~~L~~L~l~~~~~~~~-~--~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~ 508 (839)
. ++ .+|..++.+ ++|++|++++|.+..+ . .++++++|++|++++|.++ .+| .++++++|++|++++
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence 6 66 367777665 7788888888777764 3 4777888888888888777 777 777778888888887
Q ss_pred CcCCCccCchhhcCccc-cCeEEccCCccccccccccccccccchhhhcc--CCCCCEEEEEeccccCC-Ccccc-----
Q 003203 509 CRNLKVIPPNVISKLTQ-LEELYMGNTSVKWEFEGLNIERSNASLQELRH--LSQLTTLEIQIQDAMIL-PKGLF----- 579 (839)
Q Consensus 509 ~~~l~~~p~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~--l~~L~~L~l~~~~~~~~-~~~~~----- 579 (839)
|. ++.+|.. ++.+++ |++|++++|.+. .++ ..+.. +++|+.|++++|.+... |..+.
T Consensus 363 N~-l~~lp~~-l~~l~~~L~~L~Ls~N~l~-~lp-----------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 363 NQ-ITEIPAN-FCGFTEQVENLSFAHNKLK-YIP-----------NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428 (636)
T ss_dssp SE-EEECCTT-SEEECTTCCEEECCSSCCS-SCC-----------SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred Cc-cccccHh-hhhhcccCcEEEccCCcCc-ccc-----------hhhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence 75 5577766 777777 888888887765 222 23344 34899999999988763 22222
Q ss_pred ---ccccceEEEEEcCCCCCC----CCCCCccEEEecccCCcchHH-HHH-------HhcccceEEeccccCchhhcccc
Q 003203 580 ---SKKLERYKIYIGDEWDWS----GKSDNTRALKLKLCSSIYLDE-ILM-------QLKGIEHLYLDEVPGIKNVLYDL 644 (839)
Q Consensus 580 ---~~~L~~l~l~~~~~~~~~----~~~~~l~~L~l~~~~~~~~~~-~~~-------~l~~L~~L~l~~~~~~~~~~~~~ 644 (839)
..+|+.|++..+.....+ ..+++|+.|+++.+.....+. ... .+++|+.|+++++.-. .++..+
T Consensus 429 ~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 507 (636)
T 4eco_A 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDF 507 (636)
T ss_dssp CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGG
T ss_pred cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhh
Confidence 257888888876644333 247899999999877664443 111 2239999999986544 444433
Q ss_pred ccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhcccc------cccccccccccccccCCCCEEEEecCCC
Q 003203 645 EREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLI------HMEKICHSQLTAVSFCNLKIIKVRNCDR 718 (839)
Q Consensus 645 ~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~------~l~~~~~~~~~~~~~~~L~~L~i~~c~~ 718 (839)
....+++|+.|++++|.... +|. ....+++|+.|+++++. -...+ +.....+++|++|++++|.
T Consensus 508 ~~~~l~~L~~L~Ls~N~l~~-ip~-----~~~~l~~L~~L~Ls~N~~ls~N~l~~~~---p~~l~~l~~L~~L~Ls~N~- 577 (636)
T 4eco_A 508 RATTLPYLVGIDLSYNSFSK-FPT-----QPLNSSTLKGFGIRNQRDAQGNRTLREW---PEGITLCPSLTQLQIGSND- 577 (636)
T ss_dssp STTTCTTCCEEECCSSCCSS-CCC-----GGGGCSSCCEEECCSCBCTTCCBCCCCC---CTTGGGCSSCCEEECCSSC-
T ss_pred hhccCCCcCEEECCCCCCCC-cCh-----hhhcCCCCCEEECCCCcccccCcccccC---hHHHhcCCCCCEEECCCCc-
Confidence 22378999999999986433 443 56689999999996543 22233 2235679999999999976
Q ss_pred cccccchhhhhcCCCccEEEEecccchHHHhhcccCCccccCCCccccccccceeecccccccc
Q 003203 719 LKNVFSFSIARGLPQLQTITVIKCKNVEEIFMMERDGYVDCKEVNKIEFSQLRSLTLKFLPRLR 782 (839)
Q Consensus 719 L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~ 782 (839)
++.+|.. -.++|+.|++++|+-. .+....... ........+...+..++++|+.|.
T Consensus 578 l~~ip~~----~~~~L~~L~Ls~N~l~-~~~~~~~~~---~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 578 IRKVNEK----ITPNISVLDIKDNPNI-SIDLSYVCP---YIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp CCBCCSC----CCTTCCEEECCSCTTC-EEECTTTHH---HHHTTCCEEECCTTSEEESCGGGC
T ss_pred CCccCHh----HhCcCCEEECcCCCCc-cccHHhcch---hhhcccceeecCCccccCCCcccc
Confidence 5888763 2389999999998532 221100000 001112234556778899999875
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=2.2e-24 Score=246.79 Aligned_cols=155 Identities=15% Similarity=0.215 Sum_probs=134.2
Q ss_pred cccccceEEecCCCCCCCCC-CC-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccc--cCccccCCCCCc
Q 003203 382 ILKNCSAVFLNDIKTGVLPE-GL-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLS--LPPSVHLLSNLQ 457 (839)
Q Consensus 382 ~~~~~~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~ 457 (839)
...+++++++++|.+..++. .+ .+++|++|++++|.. ..++...|+++++|++|++++|.+.. .|..++++++|+
T Consensus 48 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 126 (549)
T 2z81_A 48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL-SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126 (549)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC-CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred cCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc-CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence 46789999999999987774 33 899999999999974 67777778999999999999999984 477899999999
Q ss_pred EEEccCCC-cCCC--cccCCCCCCCEEEccCCCCCC-CchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccC
Q 003203 458 TLCLDQCV-VGDI--SIIGNLKKLEILSLVDSDIER-LPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGN 533 (839)
Q Consensus 458 ~L~l~~~~-~~~~--~~~~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~ 533 (839)
+|++++|. +..+ ..++++++|++|++++|.++. .|..++++++|++|++++|. ...+|...++.+++|++|++++
T Consensus 127 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~ 205 (549)
T 2z81_A 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRD 205 (549)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEEEES
T ss_pred EEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhHhhcccccEEEccC
Confidence 99999997 4443 579999999999999999985 68889999999999999986 6777776567899999999999
Q ss_pred Ccccc
Q 003203 534 TSVKW 538 (839)
Q Consensus 534 ~~~~~ 538 (839)
|.+..
T Consensus 206 n~l~~ 210 (549)
T 2z81_A 206 TNLAR 210 (549)
T ss_dssp CBCTT
T ss_pred Ccccc
Confidence 98764
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=3.1e-24 Score=257.00 Aligned_cols=164 Identities=21% Similarity=0.268 Sum_probs=134.8
Q ss_pred ccccccccccccccccceEEecCCCCCCCC-CCC-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccccc-C
Q 003203 371 NDILVEWLNNDILKNCSAVFLNDIKTGVLP-EGL-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSL-P 447 (839)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p 447 (839)
.......|. .+.+++.+++++|.+..++ ..+ ++++|++|++++|.....++...|.++++|++|+|++|.+..+ |
T Consensus 13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 13 FCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 334555555 7789999999999997764 333 8999999999999877888777889999999999999999966 8
Q ss_pred ccccCCCCCcEEEccCCCcCC--Ccc--cCCCCCCCEEEccCCCCCCC--chhhcCCCccCeEecCCCcCCCccCchhhc
Q 003203 448 PSVHLLSNLQTLCLDQCVVGD--ISI--IGNLKKLEILSLVDSDIERL--PNEIGQLTQLRCLDLSFCRNLKVIPPNVIS 521 (839)
Q Consensus 448 ~~~~~l~~L~~L~l~~~~~~~--~~~--~~~l~~L~~L~l~~~~l~~l--p~~i~~l~~L~~L~l~~~~~l~~~p~~~l~ 521 (839)
..++++++|++|++++|.+.. +.. ++++++|++|++++|.++.+ +..++++++|++|++++|. ++.+.+..++
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~l~ 169 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELE 169 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSGGGH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCHHHcc
Confidence 899999999999999999886 443 89999999999999999866 3579999999999999987 4444333366
Q ss_pred Cc--cccCeEEccCCccc
Q 003203 522 KL--TQLEELYMGNTSVK 537 (839)
Q Consensus 522 ~l--~~L~~L~l~~~~~~ 537 (839)
.+ ++|+.|++++|.+.
T Consensus 170 ~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp HHHHCSSCCCEECCSBSC
T ss_pred cccCCccceEECCCCccc
Confidence 66 67777777777654
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=7.6e-24 Score=226.97 Aligned_cols=289 Identities=18% Similarity=0.241 Sum_probs=225.3
Q ss_pred ccccccccccccccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccC
Q 003203 373 ILVEWLNNDILKNCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHL 452 (839)
Q Consensus 373 ~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~ 452 (839)
.....+.-..+.+++++++++|.+..++....+++|++|++++|.. ..++ .+.++++|++|++++|.+..+|. +..
T Consensus 55 ~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i-~~~~--~~~~l~~L~~L~l~~n~i~~~~~-~~~ 130 (347)
T 4fmz_A 55 KVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI-TDIS--ALQNLTNLRELYLNEDNISDISP-LAN 130 (347)
T ss_dssp CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC-CCCG--GGTTCTTCSEEECTTSCCCCCGG-GTT
T ss_pred ccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcc-cCch--HHcCCCcCCEEECcCCcccCchh-hcc
Confidence 3333444455788999999999999888866999999999999964 5555 37899999999999999998877 899
Q ss_pred CCCCcEEEccCC-CcCCCcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEc
Q 003203 453 LSNLQTLCLDQC-VVGDISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYM 531 (839)
Q Consensus 453 l~~L~~L~l~~~-~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l 531 (839)
+++|++|++++| .+..++.+..+++|++|++++|.+..++. +..+++|++|++++|. ++.++. +..+++|+.|++
T Consensus 131 l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l 206 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP--LASLTSLHYFTA 206 (347)
T ss_dssp CTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG--GGGCTTCCEEEC
T ss_pred CCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc--ccCCCccceeec
Confidence 999999999999 55557889999999999999999998876 8899999999999986 777776 789999999999
Q ss_pred cCCccccccccccccccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEeccc
Q 003203 532 GNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLC 611 (839)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~ 611 (839)
++|.+.. ...+..+++|+.|++++|.+...+..
T Consensus 207 ~~n~l~~-------------~~~~~~~~~L~~L~l~~n~l~~~~~~---------------------------------- 239 (347)
T 4fmz_A 207 YVNQITD-------------ITPVANMTRLNSLKIGNNKITDLSPL---------------------------------- 239 (347)
T ss_dssp CSSCCCC-------------CGGGGGCTTCCEEECCSSCCCCCGGG----------------------------------
T ss_pred ccCCCCC-------------CchhhcCCcCCEEEccCCccCCCcch----------------------------------
Confidence 9998751 12278899999999999987765531
Q ss_pred CCcchHHHHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhccccc
Q 003203 612 SSIYLDEILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIH 691 (839)
Q Consensus 612 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~ 691 (839)
..+++|+.|++.++.- ... . ....+++|++|++++|. +..+ .....+++|+.|++++|.
T Consensus 240 ---------~~l~~L~~L~l~~n~l-~~~-~--~~~~l~~L~~L~l~~n~-l~~~------~~~~~l~~L~~L~L~~n~- 298 (347)
T 4fmz_A 240 ---------ANLSQLTWLEIGTNQI-SDI-N--AVKDLTKLKMLNVGSNQ-ISDI------SVLNNLSQLNSLFLNNNQ- 298 (347)
T ss_dssp ---------TTCTTCCEEECCSSCC-CCC-G--GGTTCTTCCEEECCSSC-CCCC------GGGGGCTTCSEEECCSSC-
T ss_pred ---------hcCCCCCEEECCCCcc-CCC-h--hHhcCCCcCEEEccCCc-cCCC------hhhcCCCCCCEEECcCCc-
Confidence 2345566666655432 222 1 13567899999998884 3332 246678899999998875
Q ss_pred ccccccccccccccCCCCEEEEecCCCcccccchhhhhcCCCccEEEEeccc
Q 003203 692 MEKICHSQLTAVSFCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKCK 743 (839)
Q Consensus 692 l~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 743 (839)
+..... .....+++|++|++++|+ ++.+++ +..+++|++|++++|+
T Consensus 299 l~~~~~--~~l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 299 LGNEDM--EVIGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp CCGGGH--HHHHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred CCCcCh--hHhhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 333321 224568999999999986 676655 5789999999999884
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=1.5e-24 Score=241.91 Aligned_cols=369 Identities=19% Similarity=0.183 Sum_probs=243.3
Q ss_pred cccccceEEecCCCCCCC-CCCC-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccccc-CccccCCCCCcE
Q 003203 382 ILKNCSAVFLNDIKTGVL-PEGL-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSL-PPSVHLLSNLQT 458 (839)
Q Consensus 382 ~~~~~~~l~l~~~~~~~l-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~ 458 (839)
..++++++++++|.+..+ |..+ ++++|++|++++|.....++...|.++++|++|++++|.+..+ |..++++++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 557889999999988766 4434 8889999999988876677777788899999999999988865 778888999999
Q ss_pred EEccCCCcCC--Ccc--cCCCCCCCEEEccCCCCCCC-chh-hcCCCccCeEecCCCcCCCccCchhhcCc--cccCeEE
Q 003203 459 LCLDQCVVGD--ISI--IGNLKKLEILSLVDSDIERL-PNE-IGQLTQLRCLDLSFCRNLKVIPPNVISKL--TQLEELY 530 (839)
Q Consensus 459 L~l~~~~~~~--~~~--~~~l~~L~~L~l~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~l--~~L~~L~ 530 (839)
|++++|.+.. +.. ++++++|++|++++|.++.+ |.. +.++++|++|++++|. ++.+++..++.+ .+|+.|+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~ 186 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLR 186 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEE
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccc
Confidence 9999998876 433 88899999999999988876 544 7889999999999887 555544446655 6888888
Q ss_pred ccCCccccccccccccccccchhhhccCCCCCEEEEEeccccCCCcccc-----ccccceEEEEEcCCCCCCCCCCCccE
Q 003203 531 MGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLF-----SKKLERYKIYIGDEWDWSGKSDNTRA 605 (839)
Q Consensus 531 l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~-----~~~L~~l~l~~~~~~~~~~~~~~l~~ 605 (839)
+++|.+....+.. ........+..+++|+.|++++|.+.......+ ..+|+.+.+..+...........+..
T Consensus 187 l~~n~l~~~~~~~---~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 263 (455)
T 3v47_A 187 LSSITLQDMNEYW---LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263 (455)
T ss_dssp CTTCBCTTCSTTC---TTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC
T ss_pred cccCcccccchhh---ccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhcc
Confidence 8888765221100 000111223456788888888887654222111 14455554433321110000000000
Q ss_pred EEecccCCcchHHHHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhh
Q 003203 606 LKLKLCSSIYLDEILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLV 685 (839)
Q Consensus 606 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~ 685 (839)
. .... ......++|+.|++.++.-....... ...+++|++|++++|... .++. ..+..+++|+.|+
T Consensus 264 ~-----~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~-~~~~----~~~~~l~~L~~L~ 329 (455)
T 3v47_A 264 P-----DNFT--FKGLEASGVKTCDLSKSKIFALLKSV--FSHFTDLEQLTLAQNEIN-KIDD----NAFWGLTHLLKLN 329 (455)
T ss_dssp C-----CTTT--TGGGTTSCCCEEECCSSCCCEECTTT--TTTCTTCCEEECTTSCCC-EECT----TTTTTCTTCCEEE
T ss_pred C-----cccc--cccccccCceEEEecCccccccchhh--cccCCCCCEEECCCCccc-ccCh----hHhcCcccCCEEE
Confidence 0 0000 00112468899999886544332222 366899999999998643 2221 2456789999999
Q ss_pred hcccccccccccccccccccCCCCEEEEecCCCcccccchhhhhcCCCccEEEEecccchHHHhhcccCCccccCCCccc
Q 003203 686 LHNLIHMEKICHSQLTAVSFCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKCKNVEEIFMMERDGYVDCKEVNKI 765 (839)
Q Consensus 686 l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~ 765 (839)
++++. ++.+... ....+++|++|++++|. ++.+++. .+..+++|++|+++++ .++.++ +....
T Consensus 330 Ls~N~-l~~~~~~--~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~-----------~~~~~ 392 (455)
T 3v47_A 330 LSQNF-LGSIDSR--MFENLDKLEVLDLSYNH-IRALGDQ-SFLGLPNLKELALDTN-QLKSVP-----------DGIFD 392 (455)
T ss_dssp CCSSC-CCEECGG--GGTTCTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSS-CCSCCC-----------TTTTT
T ss_pred CCCCc-cCCcChh--HhcCcccCCEEECCCCc-ccccChh-hccccccccEEECCCC-ccccCC-----------HhHhc
Confidence 99864 4544322 24578999999999974 6666442 3578999999999987 454432 12234
Q ss_pred cccccceeeccccccccccc
Q 003203 766 EFSQLRSLTLKFLPRLRSFY 785 (839)
Q Consensus 766 ~l~~L~~L~l~~c~~L~~l~ 785 (839)
.+++|++|+|+++|---..|
T Consensus 393 ~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 393 RLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCTTCCEEECCSSCBCCCTT
T ss_pred cCCcccEEEccCCCcccCCC
Confidence 68999999999886443333
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=1e-23 Score=241.21 Aligned_cols=360 Identities=18% Similarity=0.119 Sum_probs=210.4
Q ss_pred ceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccccc-CccccCCCCCcEEEccCCC
Q 003203 387 SAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSL-PPSVHLLSNLQTLCLDQCV 465 (839)
Q Consensus 387 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~ 465 (839)
+.++++++.+..+|..+. ++|+.|++++|.. ..++...|.++++|++|++++|.++.+ |..++++++|++|++++|.
T Consensus 34 ~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP-PRTKALSLSQNSI-SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp CEEECTTSCCCSCCTTSC-TTCCEEECCSSCC-CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred cEEEcCCCCCccCCCCCC-CCcCEEECCCCCc-cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence 677777777777776553 7788888887764 556655667788888888888887766 5667778888888888887
Q ss_pred cCCCcccCCCCCCCEEEccCCCCCCC--chhhcCCCccCeEecCCCcCCCccCchhhcCcccc--CeEEccCCcc--ccc
Q 003203 466 VGDISIIGNLKKLEILSLVDSDIERL--PNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQL--EELYMGNTSV--KWE 539 (839)
Q Consensus 466 ~~~~~~~~~l~~L~~L~l~~~~l~~l--p~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L--~~L~l~~~~~--~~~ 539 (839)
+..++.. .+++|++|++++|.++.+ |..++++++|++|++++|. +.... ++.+++| ++|++++|.+ ...
T Consensus 112 l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l~~~~~ 186 (562)
T 3a79_B 112 LQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSYHIKGG 186 (562)
T ss_dssp CCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSCCCCSS
T ss_pred CCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeeccccccccc
Confidence 7775444 778888888888877765 3677788888888888765 44322 4444555 7777777765 211
Q ss_pred ccccccc-------------------------------------------ccccchhhhccC------------------
Q 003203 540 FEGLNIE-------------------------------------------RSNASLQELRHL------------------ 558 (839)
Q Consensus 540 ~~~~~~~-------------------------------------------~~~~~l~~l~~l------------------ 558 (839)
.++.-.. .....+..+..+
T Consensus 187 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~ 266 (562)
T 3a79_B 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266 (562)
T ss_dssp SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHH
T ss_pred CcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHH
Confidence 1100000 000001111222
Q ss_pred ---------CCCCEEEEEecccc-CCCccccc--------------------------------cccceEEEEEcCCCCC
Q 003203 559 ---------SQLTTLEIQIQDAM-ILPKGLFS--------------------------------KKLERYKIYIGDEWDW 596 (839)
Q Consensus 559 ---------~~L~~L~l~~~~~~-~~~~~~~~--------------------------------~~L~~l~l~~~~~~~~ 596 (839)
++|++|++++|.+. .+|..++. .+|+.+.+..+.....
T Consensus 267 ~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~ 346 (562)
T 3a79_B 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346 (562)
T ss_dssp HHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccc
Confidence 25666666666655 45544321 1244444443332222
Q ss_pred C--CCCCCccEEEecccCCcch-HHHHHHhcccceEEeccccCchhhcc-ccccCCCCCCCeeeeccCCCcceeecCCCc
Q 003203 597 S--GKSDNTRALKLKLCSSIYL-DEILMQLKGIEHLYLDEVPGIKNVLY-DLEREGFPQLKHLQVQNNPFILCITDSTAW 672 (839)
Q Consensus 597 ~--~~~~~l~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 672 (839)
. ..+++|+.|+++.+..... +..+..+++|+.|++.++.-. .+.. ......+++|++|++++|.....++.
T Consensus 347 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~---- 421 (562)
T 3a79_B 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYD---- 421 (562)
T ss_dssp CCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC-BTTHHHHTTTTCTTCCEEECTTSCCBSCCSS----
T ss_pred cCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC-CcccchhhhcCCCCCCEEECCCCcCCCccCh----
Confidence 1 4566777777776654432 224455677777777664322 1110 01124567777777777753322321
Q ss_pred ccccccccchhhhhccccccccccccccccccc-CCCCEEEEecCCCcccccchhhhhcCCCccEEEEecccchHHHhhc
Q 003203 673 VCFDAFPLLESLVLHNLIHMEKICHSQLTAVSF-CNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKCKNVEEIFMM 751 (839)
Q Consensus 673 ~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~-~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~ 751 (839)
.....+++|+.|+++++.--..+ ...+ ++|++|++++| +++.+|.. +..+++|++|+++++ .++.++.
T Consensus 422 ~~~~~l~~L~~L~l~~n~l~~~~------~~~l~~~L~~L~L~~N-~l~~ip~~--~~~l~~L~~L~L~~N-~l~~l~~- 490 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNMLTGSV------FRCLPPKVKVLDLHNN-RIMSIPKD--VTHLQALQELNVASN-QLKSVPD- 490 (562)
T ss_dssp CCCCCCTTCCEEECCSSCCCGGG------GSSCCTTCSEEECCSS-CCCCCCTT--TTSSCCCSEEECCSS-CCCCCCT-
T ss_pred hhhcCcccCCEEECCCCCCCcch------hhhhcCcCCEEECCCC-cCcccChh--hcCCCCCCEEECCCC-CCCCCCH-
Confidence 12445677777777775422211 1122 57888888776 56666552 347788888888776 3443321
Q ss_pred ccCCccccCCCccccccccceeeccccc
Q 003203 752 ERDGYVDCKEVNKIEFSQLRSLTLKFLP 779 (839)
Q Consensus 752 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 779 (839)
..+..+++|+.|+++++|
T Consensus 491 ----------~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 491 ----------GVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp ----------TSTTTCTTCCCEECCSCC
T ss_pred ----------HHHhcCCCCCEEEecCCC
Confidence 113457788888888776
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1.5e-23 Score=233.78 Aligned_cols=324 Identities=19% Similarity=0.201 Sum_probs=260.8
Q ss_pred ccccccccccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCC
Q 003203 377 WLNNDILKNCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNL 456 (839)
Q Consensus 377 ~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L 456 (839)
.+....+.+++.+++++|.+..+|....+++|++|++++|.. ..++. +.++++|++|++++|.+..+|. +..+++|
T Consensus 61 l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L 136 (466)
T 1o6v_A 61 IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI-ADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNL 136 (466)
T ss_dssp CTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred CcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCcc-ccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCC
Confidence 333445778999999999998888766899999999999875 45554 6899999999999999998876 8999999
Q ss_pred cEEEccCCCcCCCcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcc
Q 003203 457 QTLCLDQCVVGDISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSV 536 (839)
Q Consensus 457 ~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~ 536 (839)
++|++++|.+..++.++++++|++|+++ +.+..++. +.++++|++|++++|. ++.++. ++.+++|++|++++|.+
T Consensus 137 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l 211 (466)
T 1o6v_A 137 NRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNK-VSDISV--LAKLTNLESLIATNNQI 211 (466)
T ss_dssp SEEEEEEEEECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCC
T ss_pred CEEECCCCccCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCc-CCCChh--hccCCCCCEEEecCCcc
Confidence 9999999999998889999999999997 45555554 8899999999999987 777764 88999999999999987
Q ss_pred ccccccccccccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCC--CCCCCCCccEEEecccCCc
Q 003203 537 KWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWD--WSGKSDNTRALKLKLCSSI 614 (839)
Q Consensus 537 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~l~~L~l~~~~~~ 614 (839)
... ..++.+++|+.|++++|.+..++.....++|+.|++..+.... ....+++|+.|+++.+...
T Consensus 212 ~~~-------------~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~ 278 (466)
T 1o6v_A 212 SDI-------------TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 278 (466)
T ss_dssp CCC-------------GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCC
T ss_pred ccc-------------ccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccC
Confidence 521 2267789999999999998887655555889999988765332 2567789999999988766
Q ss_pred chHHHHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhcccccccc
Q 003203 615 YLDEILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEK 694 (839)
Q Consensus 615 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~ 694 (839)
.... ...+++|+.|++.++.-. .... ...+++|+.|++++|.. ..++ ....+++|+.|++++| .++.
T Consensus 279 ~~~~-~~~l~~L~~L~L~~n~l~-~~~~---~~~l~~L~~L~L~~n~l-~~~~------~~~~l~~L~~L~l~~n-~l~~ 345 (466)
T 1o6v_A 279 NISP-LAGLTALTNLELNENQLE-DISP---ISNLKNLTYLTLYFNNI-SDIS------PVSSLTKLQRLFFYNN-KVSD 345 (466)
T ss_dssp CCGG-GTTCTTCSEEECCSSCCS-CCGG---GGGCTTCSEEECCSSCC-SCCG------GGGGCTTCCEEECCSS-CCCC
T ss_pred cccc-ccCCCccCeEEcCCCccc-Cchh---hcCCCCCCEEECcCCcC-CCch------hhccCccCCEeECCCC-ccCC
Confidence 5544 677899999999986533 3222 36789999999999953 2222 3578999999999997 4555
Q ss_pred cccccccccccCCCCEEEEecCCCcccccchhhhhcCCCccEEEEeccc
Q 003203 695 ICHSQLTAVSFCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKCK 743 (839)
Q Consensus 695 ~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 743 (839)
+ .....+++|+.|++++|. ++.+++ +..+++|+.|++++|+
T Consensus 346 ~----~~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 346 V----SSLANLTNINWLSAGHNQ-ISDLTP---LANLTRITQLGLNDQA 386 (466)
T ss_dssp C----GGGTTCTTCCEEECCSSC-CCBCGG---GTTCTTCCEEECCCEE
T ss_pred c----hhhccCCCCCEEeCCCCc-cCccch---hhcCCCCCEEeccCCc
Confidence 4 235678999999999985 666655 5889999999999985
No 26
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=9.5e-24 Score=247.95 Aligned_cols=302 Identities=18% Similarity=0.135 Sum_probs=201.7
Q ss_pred ccccccceEEecCCCCCCCCCC-C-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCc-cccCCCCCc
Q 003203 381 DILKNCSAVFLNDIKTGVLPEG-L-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPP-SVHLLSNLQ 457 (839)
Q Consensus 381 ~~~~~~~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~ 457 (839)
....+++++++++|.+..+|.. + ++++|++|++++|.. ..++...|+++++|++|++++|.+..+|. .++++++|+
T Consensus 22 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC-CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc-CccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCC
Confidence 3457899999999999888864 3 889999999999875 55666677899999999999999998887 589999999
Q ss_pred EEEccCCCcCCC--cccCCCCCCCEEEccCCCCCCC-chhhcCCCccCeEecCCCcCCCccCchhhc--CccccCeEEcc
Q 003203 458 TLCLDQCVVGDI--SIIGNLKKLEILSLVDSDIERL-PNEIGQLTQLRCLDLSFCRNLKVIPPNVIS--KLTQLEELYMG 532 (839)
Q Consensus 458 ~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~l~--~l~~L~~L~l~ 532 (839)
+|++++|.+..+ ..++++++|++|++++|.++.. |..++++++|++|++++|. ++.+++..++ .+++|++|+++
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECT
T ss_pred EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECC
Confidence 999999988873 5789999999999999988865 5568899999999999986 6666665444 56899999999
Q ss_pred CCcccccccccccccc-------------cc---chhhhccCCCCCEEEEEeccccCCCccccc----cccceEEEEEcC
Q 003203 533 NTSVKWEFEGLNIERS-------------NA---SLQELRHLSQLTTLEIQIQDAMILPKGLFS----KKLERYKIYIGD 592 (839)
Q Consensus 533 ~~~~~~~~~~~~~~~~-------------~~---~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~----~~L~~l~l~~~~ 592 (839)
+|.+....++.-.... .. .+...-..++|+.|+++++.+...+...+. .+|+.|+++.+.
T Consensus 180 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~ 259 (680)
T 1ziw_A 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259 (680)
T ss_dssp TCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred CCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence 9877543321100000 00 000001236677777777766654433322 347777776554
Q ss_pred CC----CCCCCCCCccEEEecccCCcchHH-HHHHhcccceEEeccccCchh-----hc--cccccCCCCCCCeeeeccC
Q 003203 593 EW----DWSGKSDNTRALKLKLCSSIYLDE-ILMQLKGIEHLYLDEVPGIKN-----VL--YDLEREGFPQLKHLQVQNN 660 (839)
Q Consensus 593 ~~----~~~~~~~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~-----~~--~~~~~~~l~~L~~L~l~~~ 660 (839)
.. .+...+++|+.|+++.+......+ .+..+++|+.|++.++..... +. .......+++|++|++++|
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n 339 (680)
T 1ziw_A 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC
T ss_pred cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC
Confidence 22 345566777888777765444322 455677777777765321110 00 0112245677777777776
Q ss_pred CCcceeecCCCcccccccccchhhhhccc
Q 003203 661 PFILCITDSTAWVCFDAFPLLESLVLHNL 689 (839)
Q Consensus 661 ~~l~~i~~~~~~~~~~~~p~L~~L~l~~~ 689 (839)
.... ++ ...+..+++|+.|+++++
T Consensus 340 ~l~~-~~----~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 340 DIPG-IK----SNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp CBCC-CC----TTTTTTCTTCCEEECTTC
T ss_pred ccCC-CC----hhHhccccCCcEEECCCC
Confidence 4221 11 113445666666666654
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=2.2e-23 Score=244.84 Aligned_cols=148 Identities=18% Similarity=0.239 Sum_probs=116.4
Q ss_pred ccccceEEecCCCCCCCCCC-C-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccC-ccccCCCCCcEE
Q 003203 383 LKNCSAVFLNDIKTGVLPEG-L-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLP-PSVHLLSNLQTL 459 (839)
Q Consensus 383 ~~~~~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L 459 (839)
..+++.+++++|.+..++.. + ++++|++|++++|. +..+|...|.++++|++|++++|.+..+| ..++++++|++|
T Consensus 48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 126 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126 (680)
T ss_dssp GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEE
T ss_pred CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEE
Confidence 56789999999998777543 3 78999999999886 46788777889999999999999998776 578999999999
Q ss_pred EccCCCcCC--CcccCCCCCCCEEEccCCCCCCCchh-h--cCCCccCeEecCCCcCCCccCchhhcCccccCeEEcc
Q 003203 460 CLDQCVVGD--ISIIGNLKKLEILSLVDSDIERLPNE-I--GQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMG 532 (839)
Q Consensus 460 ~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-i--~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~ 532 (839)
++++|.+.. +..++++++|++|++++|.++.++.. + ..+++|++|++++|. ++.+++..++.+++|+.|++.
T Consensus 127 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~ 203 (680)
T 1ziw_A 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLN 203 (680)
T ss_dssp ECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC-CCCBCTTGGGGSSEECEEECT
T ss_pred ECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc-ccccChhhhhhhhhhhhhhcc
Confidence 999998877 46788999999999999998877653 3 356889999999885 555555445555444444433
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1.2e-23 Score=229.20 Aligned_cols=306 Identities=15% Similarity=0.177 Sum_probs=205.6
Q ss_pred CCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCc-cccCCCCCcEEEccCCCcCCC--cccCCCCCC
Q 003203 402 GLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPP-SVHLLSNLQTLCLDQCVVGDI--SIIGNLKKL 478 (839)
Q Consensus 402 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L 478 (839)
...+++++.|.+.++. +..+|..+|.++++|++|++++|.+..++. .+..+++|++|++++|.+..+ ..++++++|
T Consensus 41 ~~~l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 41 DITLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp SGGGCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccccCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 3466788888887775 467787777888888888888888886654 778888888888888887773 457888888
Q ss_pred CEEEccCCCCCCCchhh-cCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccccccccchhhhcc
Q 003203 479 EILSLVDSDIERLPNEI-GQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRH 557 (839)
Q Consensus 479 ~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 557 (839)
++|++++|.++.+|..+ .++++|++|++++|. ++.+++..++++++|++|++++|.+.. ..+..
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~ 184 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH--------------VDLSL 184 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB--------------CCGGG
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc--------------ccccc
Confidence 88888888888887764 778888888888876 666665557888888888888887641 12556
Q ss_pred CCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHHHHHHhcccceEEeccccCc
Q 003203 558 LSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDEILMQLKGIEHLYLDEVPGI 637 (839)
Q Consensus 558 l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 637 (839)
+++|+.|++++|.+..++. ..+|+.+++. .+.....+. ..+++|+.|++.++.-.
T Consensus 185 l~~L~~L~l~~n~l~~~~~---~~~L~~L~l~--------------------~n~l~~~~~--~~~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 185 IPSLFHANVSYNLLSTLAI---PIAVEELDAS--------------------HNSINVVRG--PVNVELTILKLQHNNLT 239 (390)
T ss_dssp CTTCSEEECCSSCCSEEEC---CSSCSEEECC--------------------SSCCCEEEC--CCCSSCCEEECCSSCCC
T ss_pred ccccceeecccccccccCC---CCcceEEECC--------------------CCeeeeccc--cccccccEEECCCCCCc
Confidence 7788888888776554321 1334444433 222211111 11356777777665432
Q ss_pred hhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhcccccccccccccccccccCCCCEEEEecCC
Q 003203 638 KNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICHSQLTAVSFCNLKIIKVRNCD 717 (839)
Q Consensus 638 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~c~ 717 (839)
. . . ....+++|++|++++|......+ ..+..+++|+.|+++++ .++.++. ....+++|++|++++|
T Consensus 240 ~-~-~--~l~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~---~~~~l~~L~~L~L~~n- 305 (390)
T 3o6n_A 240 D-T-A--WLLNYPGLVEVDLSYNELEKIMY-----HPFVKMQRLERLYISNN-RLVALNL---YGQPIPTLKVLDLSHN- 305 (390)
T ss_dssp C-C-G--GGGGCTTCSEEECCSSCCCEEES-----GGGTTCSSCCEEECCSS-CCCEEEC---SSSCCTTCCEEECCSS-
T ss_pred c-c-H--HHcCCCCccEEECCCCcCCCcCh-----hHccccccCCEEECCCC-cCcccCc---ccCCCCCCCEEECCCC-
Confidence 2 1 1 23557888888888875332222 24566788888888875 4555432 2356788888888887
Q ss_pred CcccccchhhhhcCCCccEEEEecccchHHHhhcccCCccccCCCccccccccceeeccccc
Q 003203 718 RLKNVFSFSIARGLPQLQTITVIKCKNVEEIFMMERDGYVDCKEVNKIEFSQLRSLTLKFLP 779 (839)
Q Consensus 718 ~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 779 (839)
.++.++. .+..+++|++|++++|+ ++.+. ...+++|+.|+++++|
T Consensus 306 ~l~~~~~--~~~~l~~L~~L~L~~N~-i~~~~--------------~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 306 HLLHVER--NQPQFDRLENLYLDHNS-IVTLK--------------LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCCCCGG--GHHHHTTCSEEECCSSC-CCCCC--------------CCTTCCCSEEECCSSC
T ss_pred cceecCc--cccccCcCCEEECCCCc-cceeC--------------chhhccCCEEEcCCCC
Confidence 4666654 24678888888888874 33321 2347888888888875
No 29
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=8e-24 Score=243.47 Aligned_cols=149 Identities=21% Similarity=0.283 Sum_probs=126.8
Q ss_pred cceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccC-ccccCCCCCcEEEccCC
Q 003203 386 CSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLP-PSVHLLSNLQTLCLDQC 464 (839)
Q Consensus 386 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~ 464 (839)
.+.+...+..+..+|..+ .++++.|++++|.. ..++...|.++++|++|++++|.+..++ ..++++++|++|++++|
T Consensus 9 ~~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNL-PFSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TTEEECCSSCCSSCCSSS-CSSCCEEECCSCCC-CEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CcEEEeCCCCccccCCCc-cccccEEEccCCcc-CccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 345666667778888754 36799999999874 5666667799999999999999999775 57899999999999999
Q ss_pred CcCC--CcccCCCCCCCEEEccCCCCCCCch-hhcCCCccCeEecCCCcCCCc--cCchhhcCccccCeEEccCCcccc
Q 003203 465 VVGD--ISIIGNLKKLEILSLVDSDIERLPN-EIGQLTQLRCLDLSFCRNLKV--IPPNVISKLTQLEELYMGNTSVKW 538 (839)
Q Consensus 465 ~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~--~p~~~l~~l~~L~~L~l~~~~~~~ 538 (839)
.+.. +..++++++|++|++++|.++.+|. .++++++|++|++++|. ++. +|.. ++++++|++|++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECTTSCCCE
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhh-hcccCCCCEEeCcCCccce
Confidence 9887 3679999999999999999998876 68999999999999987 554 5665 8999999999999998763
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=6.2e-23 Score=228.81 Aligned_cols=364 Identities=16% Similarity=0.146 Sum_probs=260.7
Q ss_pred ceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccc-cc-CccccCCCCCcEEEccCC
Q 003203 387 SAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLL-SL-PPSVHLLSNLQTLCLDQC 464 (839)
Q Consensus 387 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l-p~~~~~l~~L~~L~l~~~ 464 (839)
+.+...++.+..+|. -.++|++|++++|.. ..++...|+++++|++|++++|.+. .+ |..+..+++|++|++++|
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSI-AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSSCC-CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCCcc-CcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 456777778888887 337899999999875 5555556799999999999999886 55 567899999999999999
Q ss_pred CcCC--CcccCCCCCCCEEEccCCCCCC-Cchh--hcCCCccCeEecCCCcCCCcc-CchhhcCccccCeEEccCCcccc
Q 003203 465 VVGD--ISIIGNLKKLEILSLVDSDIER-LPNE--IGQLTQLRCLDLSFCRNLKVI-PPNVISKLTQLEELYMGNTSVKW 538 (839)
Q Consensus 465 ~~~~--~~~~~~l~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~l~~~-p~~~l~~l~~L~~L~l~~~~~~~ 538 (839)
.+.. +..++++++|++|++++|.++. .|.. ++++++|++|++++|. ++.+ |...++++++|++|++++|.+..
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccc
Confidence 8877 5689999999999999999985 4554 8899999999999987 5555 55547899999999999998763
Q ss_pred ccccccccccccchhhhccC--CCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcch
Q 003203 539 EFEGLNIERSNASLQELRHL--SQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYL 616 (839)
Q Consensus 539 ~~~~~~~~~~~~~l~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 616 (839)
..+ ..+..+ .+|+.|+++++.+..++....... ........++|+.|+++.+.....
T Consensus 169 ~~~-----------~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~----------~~~~~~~~~~L~~L~Ls~n~l~~~ 227 (455)
T 3v47_A 169 ICE-----------EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE----------KCGNPFKNTSITTLDLSGNGFKES 227 (455)
T ss_dssp CCT-----------TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHH----------HHCCTTTTCEEEEEECTTSCCCHH
T ss_pred cCh-----------hhhhccccccccccccccCcccccchhhcccc----------ccccccccceeeeEecCCCccccc
Confidence 322 223333 578888888888777664321100 001122346788888887765443
Q ss_pred HH-HHHH---hcccceEEeccccCchhhcc----------ccccCCCCCCCeeeeccCCCcceeecCCCcccccccccch
Q 003203 617 DE-ILMQ---LKGIEHLYLDEVPGIKNVLY----------DLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLE 682 (839)
Q Consensus 617 ~~-~~~~---l~~L~~L~l~~~~~~~~~~~----------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~ 682 (839)
.+ .+.. .++|+.|++.++........ .+.....++|+.|++++|......+. .+..+++|+
T Consensus 228 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~ 302 (455)
T 3v47_A 228 MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS-----VFSHFTDLE 302 (455)
T ss_dssp HHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT-----TTTTCTTCC
T ss_pred chhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchh-----hcccCCCCC
Confidence 32 3333 37899999887643321110 01111247899999999865433222 467889999
Q ss_pred hhhhcccccccccccccccccccCCCCEEEEecCCCcccccchhhhhcCCCccEEEEecccchHHHhhcccCCccccCCC
Q 003203 683 SLVLHNLIHMEKICHSQLTAVSFCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKCKNVEEIFMMERDGYVDCKEV 762 (839)
Q Consensus 683 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~ 762 (839)
.|+++++. ++.+... ....+++|++|++++| .++.+++. .+..+++|++|++++|. ++.+. +.
T Consensus 303 ~L~Ls~n~-l~~~~~~--~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~-----------~~ 365 (455)
T 3v47_A 303 QLTLAQNE-INKIDDN--AFWGLTHLLKLNLSQN-FLGSIDSR-MFENLDKLEVLDLSYNH-IRALG-----------DQ 365 (455)
T ss_dssp EEECTTSC-CCEECTT--TTTTCTTCCEEECCSS-CCCEECGG-GGTTCTTCCEEECCSSC-CCEEC-----------TT
T ss_pred EEECCCCc-ccccChh--HhcCcccCCEEECCCC-ccCCcChh-HhcCcccCCEEECCCCc-ccccC-----------hh
Confidence 99999865 4444222 2457899999999997 46766553 45889999999999984 33331 33
Q ss_pred ccccccccceeeccccccccccccccccchhhhhhh
Q 003203 763 NKIEFSQLRSLTLKFLPRLRSFYFQMEASATAKETH 798 (839)
Q Consensus 763 ~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~l~~~ 798 (839)
.+..+++|++|+++++ +++.++.......++++.+
T Consensus 366 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 400 (455)
T 3v47_A 366 SFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKI 400 (455)
T ss_dssp TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred hccccccccEEECCCC-ccccCCHhHhccCCcccEE
Confidence 4456899999999997 6888888765666666655
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=5.7e-23 Score=226.98 Aligned_cols=303 Identities=14% Similarity=0.114 Sum_probs=208.9
Q ss_pred ccccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEcc
Q 003203 383 LKNCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLD 462 (839)
Q Consensus 383 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 462 (839)
+.+++.++++++.+..+|....+++|++|++++|.. ..++ ++.+++|++|++++|.++.+| ++.+++|++|+++
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l-~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNI-TTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD 114 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCC-SCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECC
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcC-CeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEECC
Confidence 567999999999998888655899999999999874 4455 688999999999999999886 8899999999999
Q ss_pred CCCcCCCcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcccccccc
Q 003203 463 QCVVGDISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEG 542 (839)
Q Consensus 463 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 542 (839)
+|.+..++ ++++++|++|++++|.++.++ ++++++|++|++++|..++.++ ++.+++|++|++++|.+..
T Consensus 115 ~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~---- 184 (457)
T 3bz5_A 115 TNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE---- 184 (457)
T ss_dssp SSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC----
T ss_pred CCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce----
Confidence 99988875 899999999999999999875 7899999999999997777773 7889999999999998751
Q ss_pred ccccccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCC-CCCCCCccEEEecccCCcchHHHHH
Q 003203 543 LNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDW-SGKSDNTRALKLKLCSSIYLDEILM 621 (839)
Q Consensus 543 ~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~l~~L~l~~~~~~~~~~~~~ 621 (839)
+. +..+++|+.|++++|.+..++ ....++|+.|+++.+..... ...+++|+.|+++.+.....+ ..
T Consensus 185 ---------l~-l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~--~~ 251 (457)
T 3bz5_A 185 ---------LD-VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELD--VS 251 (457)
T ss_dssp ---------CC-CTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CT
T ss_pred ---------ec-cccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcC--HH
Confidence 11 677889999999998887763 22224555555544322111 222334444444433222111 11
Q ss_pred HhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhccccccccccccc--
Q 003203 622 QLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICHSQ-- 699 (839)
Q Consensus 622 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~-- 699 (839)
.+++|+.|++.. .+|+.|++++|..+..++ .+.+++|+.|++++|..+..++...
T Consensus 252 ~l~~L~~L~l~~----------------n~L~~L~l~~n~~~~~~~-------~~~l~~L~~L~Ls~n~~l~~l~~~~~~ 308 (457)
T 3bz5_A 252 TLSKLTTLHCIQ----------------TDLLEIDLTHNTQLIYFQ-------AEGCRKIKELDVTHNTQLYLLDCQAAG 308 (457)
T ss_dssp TCTTCCEEECTT----------------CCCSCCCCTTCTTCCEEE-------CTTCTTCCCCCCTTCTTCCEEECTTCC
T ss_pred HCCCCCEEeccC----------------CCCCEEECCCCccCCccc-------ccccccCCEEECCCCcccceeccCCCc
Confidence 222222222211 244555555555444443 3467788888888877666554211
Q ss_pred ---ccccccCCCCEEEEecCCCcccccchhhhhcCCCccEEEEecc
Q 003203 700 ---LTAVSFCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKC 742 (839)
Q Consensus 700 ---~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c 742 (839)
.....+++|+.|+++++ +++.++ +..+++|+.|+++++
T Consensus 309 L~~L~l~~~~~L~~L~L~~N-~l~~l~----l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 309 ITELDLSQNPKLVYLYLNNT-ELTELD----VSHNTKLKSLSCVNA 349 (457)
T ss_dssp CSCCCCTTCTTCCEEECTTC-CCSCCC----CTTCTTCSEEECCSS
T ss_pred ceEechhhcccCCEEECCCC-cccccc----cccCCcCcEEECCCC
Confidence 11234466777777664 355542 467888888888764
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=5.9e-23 Score=236.15 Aligned_cols=304 Identities=15% Similarity=0.181 Sum_probs=191.0
Q ss_pred CCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCc-cccCCCCCcEEEccCCCcCCC--cccCCCCCCC
Q 003203 403 LEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPP-SVHLLSNLQTLCLDQCVVGDI--SIIGNLKKLE 479 (839)
Q Consensus 403 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~ 479 (839)
+.+.+++.+.+.++. +..+|..+|.++++|++|++++|.+..+|+ .++.+++|++|++++|.+..+ ..++++++|+
T Consensus 48 l~l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 48 ITLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGGCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 356677777777665 356777777777777777777777776543 677777777777777777662 3467777777
Q ss_pred EEEccCCCCCCCchhh-cCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccccccccchhhhccC
Q 003203 480 ILSLVDSDIERLPNEI-GQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHL 558 (839)
Q Consensus 480 ~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l 558 (839)
+|++++|.++.+|..+ +++++|++|++++|. ++.+++..++++++|++|++++|.+... .+..+
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------------~~~~l 191 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHV--------------DLSLI 191 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBC--------------CGGGC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCc--------------Chhhh
Confidence 7777777777777653 677777777777765 5555554477777777777777765411 24556
Q ss_pred CCCCEEEEEeccccCCCccccccccceEEEEEcCCCCC-CCCCCCccEEEecccCCcchHHHHHHhcccceEEeccccCc
Q 003203 559 SQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDW-SGKSDNTRALKLKLCSSIYLDEILMQLKGIEHLYLDEVPGI 637 (839)
Q Consensus 559 ~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 637 (839)
++|+.|++++|.+..++ ...+|+.|++..+..... ....++|+.|+++.+.... ...+..+++|+.|+++++.-.
T Consensus 192 ~~L~~L~l~~n~l~~l~---~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 192 PSLFHANVSYNLLSTLA---IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELE 267 (597)
T ss_dssp TTCSEEECCSSCCSEEE---CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCC
T ss_pred hhhhhhhcccCcccccc---CCchhheeeccCCcccccccccCCCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccC
Confidence 77777777766554432 224555555544432211 1223567777777655443 234566777777777765433
Q ss_pred hhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhcccccccccccccccccccCCCCEEEEecCC
Q 003203 638 KNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICHSQLTAVSFCNLKIIKVRNCD 717 (839)
Q Consensus 638 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~c~ 717 (839)
...+.. ...+++|+.|+|++|. +..++. ....+|+|+.|++++|. +..++. ....+++|+.|++++|.
T Consensus 268 ~~~~~~--~~~l~~L~~L~Ls~N~-l~~l~~-----~~~~l~~L~~L~Ls~N~-l~~i~~---~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 268 KIMYHP--FVKMQRLERLYISNNR-LVALNL-----YGQPIPTLKVLDLSHNH-LLHVER---NQPQFDRLENLYLDHNS 335 (597)
T ss_dssp EEESGG--GTTCSSCCEEECTTSC-CCEEEC-----SSSCCTTCCEEECCSSC-CCCCGG---GHHHHTTCSEEECCSSC
T ss_pred CCCHHH--hcCccCCCEEECCCCC-CCCCCc-----ccccCCCCcEEECCCCC-CCccCc---ccccCCCCCEEECCCCC
Confidence 222222 2557777888877764 333432 33457777777777753 444432 24567777777777764
Q ss_pred CcccccchhhhhcCCCccEEEEeccc
Q 003203 718 RLKNVFSFSIARGLPQLQTITVIKCK 743 (839)
Q Consensus 718 ~L~~l~~~~~~~~l~~L~~L~l~~c~ 743 (839)
++.++ +..+++|+.|++++++
T Consensus 336 -l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 336 -IVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp -CCCCC----CCTTCCCSEEECCSSC
T ss_pred -CCCcC----hhhcCCCCEEEeeCCC
Confidence 45443 3566777777777654
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=6.2e-22 Score=221.93 Aligned_cols=311 Identities=19% Similarity=0.204 Sum_probs=186.7
Q ss_pred ceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccccc-CccccCCCCCcEEEccCCC
Q 003203 387 SAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSL-PPSVHLLSNLQTLCLDQCV 465 (839)
Q Consensus 387 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~ 465 (839)
+.+...++.+..+|..+ .++++.|++++|.. ..++...|.++++|++|+|++|.+..+ |..+.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCC-CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCcc-ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 45666666667777654 35778888887764 455555667888888888888888765 6678888888888888887
Q ss_pred cCCC--cccCCCCCCCEEEccCCCCCCC-chhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcccccccc
Q 003203 466 VGDI--SIIGNLKKLEILSLVDSDIERL-PNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEG 542 (839)
Q Consensus 466 ~~~~--~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 542 (839)
+..+ ..++++++|++|++++|.+..+ |..+.++++|++|++++|. +..+++..++++++|++|++++|.+...
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~--- 167 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSI--- 167 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSC---
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCccc---
Confidence 7773 3467888888888888877755 5567788888888888876 5656554577888888888888876421
Q ss_pred ccccccccchhhhccCCCCCEEEEEeccccCCCccccc--cccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHHHH
Q 003203 543 LNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFS--KKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDEIL 620 (839)
Q Consensus 543 ~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~ 620 (839)
....+..+++|+.|++++|.+..++...+. .+|+.|++..+...... +...
T Consensus 168 --------~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~-------------------~~~~ 220 (477)
T 2id5_A 168 --------PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM-------------------TPNC 220 (477)
T ss_dssp --------CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEE-------------------CTTT
T ss_pred --------ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccccc-------------------Cccc
Confidence 124567788888888888777665543322 44555554433221100 0001
Q ss_pred HHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhcccccccccccccc
Q 003203 621 MQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICHSQL 700 (839)
Q Consensus 621 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~ 700 (839)
....+|+.|++.++.- ..+... ....+++|+.|+|++|. +..++. ..+..+++|+.|+++++. ++.+.. .
T Consensus 221 ~~~~~L~~L~l~~n~l-~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~----~~~~~l~~L~~L~L~~n~-l~~~~~--~ 290 (477)
T 2id5_A 221 LYGLNLTSLSITHCNL-TAVPYL-AVRHLVYLRFLNLSYNP-ISTIEG----SMLHELLRLQEIQLVGGQ-LAVVEP--Y 290 (477)
T ss_dssp TTTCCCSEEEEESSCC-CSCCHH-HHTTCTTCCEEECCSSC-CCEECT----TSCTTCTTCCEEECCSSC-CSEECT--T
T ss_pred ccCccccEEECcCCcc-cccCHH-HhcCccccCeeECCCCc-CCccCh----hhccccccCCEEECCCCc-cceECH--H
Confidence 1122455555554422 111110 12445666666666654 222221 123455666666666542 333321 1
Q ss_pred cccccCCCCEEEEecCCCcccccchhhhhcCCCccEEEEecc
Q 003203 701 TAVSFCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKC 742 (839)
Q Consensus 701 ~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c 742 (839)
....+++|+.|++++| .++.+++. .+..+++|++|+++++
T Consensus 291 ~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 291 AFRGLNYLRVLNVSGN-QLTTLEES-VFHSVGNLETLILDSN 330 (477)
T ss_dssp TBTTCTTCCEEECCSS-CCSCCCGG-GBSCGGGCCEEECCSS
T ss_pred HhcCcccCCEEECCCC-cCceeCHh-HcCCCcccCEEEccCC
Confidence 2345566666666664 45555442 2355666666666543
No 34
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=2.8e-22 Score=227.41 Aligned_cols=367 Identities=15% Similarity=0.097 Sum_probs=251.3
Q ss_pred cccccceEEecCCCCCCCCC-C-CCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEE
Q 003203 382 ILKNCSAVFLNDIKTGVLPE-G-LEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTL 459 (839)
Q Consensus 382 ~~~~~~~l~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L 459 (839)
+..+++++++++|.+..++. . ..+++|++|++++|.. ..+++..|.++++|++|++++|.++.+|.. .+++|++|
T Consensus 19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L 95 (520)
T 2z7x_B 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRI-QYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHL 95 (520)
T ss_dssp CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC-CEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEE
T ss_pred ccccccEEECCCCcccccChhhccccccccEEecCCCcc-CCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEE
Confidence 44789999999999988874 2 3899999999999975 556556679999999999999999999887 89999999
Q ss_pred EccCCCcCC---CcccCCCCCCCEEEccCCCCCCCchhhcCCCcc--CeEecCCCcC--CCccCch--------------
Q 003203 460 CLDQCVVGD---ISIIGNLKKLEILSLVDSDIERLPNEIGQLTQL--RCLDLSFCRN--LKVIPPN-------------- 518 (839)
Q Consensus 460 ~l~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--l~~~p~~-------------- 518 (839)
++++|.+.. |..++++++|++|++++|.++. ..+..+++| ++|++++|.. ....|..
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred eccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 999998876 4689999999999999998875 456677777 9998888764 2222322
Q ss_pred -----------hhcCccccCeEEccCCc-------cccccccccc---------cc---ccc---chhhhccCCCCCEEE
Q 003203 519 -----------VISKLTQLEELYMGNTS-------VKWEFEGLNI---------ER---SNA---SLQELRHLSQLTTLE 565 (839)
Q Consensus 519 -----------~l~~l~~L~~L~l~~~~-------~~~~~~~~~~---------~~---~~~---~l~~l~~l~~L~~L~ 565 (839)
.+.++++|+.|++++|. +....+.... .. ... .+......++|+.|+
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 12235555666555543 1000000000 00 000 000001123566666
Q ss_pred EEecccc-CCCcccc------c--------------------------cccceEEEEEcCCCCCC--CCCCCccEEEecc
Q 003203 566 IQIQDAM-ILPKGLF------S--------------------------KKLERYKIYIGDEWDWS--GKSDNTRALKLKL 610 (839)
Q Consensus 566 l~~~~~~-~~~~~~~------~--------------------------~~L~~l~l~~~~~~~~~--~~~~~l~~L~l~~ 610 (839)
+++|.+. .+|..++ . .+|+.+.+..+...... ..+++|+.|+++.
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~ 333 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred eecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeEC
Confidence 6666555 4444331 1 34666666655433332 6788999999998
Q ss_pred cCCcc-hHHHHHHhcccceEEeccccCch--hhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhc
Q 003203 611 CSSIY-LDEILMQLKGIEHLYLDEVPGIK--NVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLH 687 (839)
Q Consensus 611 ~~~~~-~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~ 687 (839)
+.... .+..+..+++|+.|++.++.-.. ..+.. ...+++|++|++++|.....++.. ....+++|+.|+++
T Consensus 334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~--~~~l~~L~~L~Ls~N~l~~~l~~~----~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM--TTQMKSLQQLDISQNSVSYDEKKG----DCSWTKSLLSLNMS 407 (520)
T ss_dssp SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHH--HTTCTTCCEEECCSSCCBCCGGGC----SCCCCTTCCEEECC
T ss_pred CccChhhhhhhccCCCCCEEEccCCccCccccchHH--HhhCCCCCEEECCCCcCCcccccc----hhccCccCCEEECc
Confidence 87655 23356778999999999876443 22222 367899999999999654334321 35678999999999
Q ss_pred cccccccccccccccccc-CCCCEEEEecCCCcccccchhhhhcCCCccEEEEecccchHHHhhcccCCccccCCCcccc
Q 003203 688 NLIHMEKICHSQLTAVSF-CNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKCKNVEEIFMMERDGYVDCKEVNKIE 766 (839)
Q Consensus 688 ~~~~l~~~~~~~~~~~~~-~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~ 766 (839)
++.--..++ ..+ ++|+.|++++| +++.+|.. +..+++|++|++++| .++.++. ..+..
T Consensus 408 ~N~l~~~~~------~~l~~~L~~L~Ls~N-~l~~ip~~--~~~l~~L~~L~L~~N-~l~~l~~-----------~~~~~ 466 (520)
T 2z7x_B 408 SNILTDTIF------RCLPPRIKVLDLHSN-KIKSIPKQ--VVKLEALQELNVASN-QLKSVPD-----------GIFDR 466 (520)
T ss_dssp SSCCCGGGG------GSCCTTCCEEECCSS-CCCCCCGG--GGGCTTCCEEECCSS-CCCCCCT-----------TTTTT
T ss_pred CCCCCcchh------hhhcccCCEEECCCC-cccccchh--hhcCCCCCEEECCCC-cCCccCH-----------HHhcc
Confidence 975333321 122 79999999997 57777653 459999999999998 4555432 12456
Q ss_pred ccccceeecccccc
Q 003203 767 FSQLRSLTLKFLPR 780 (839)
Q Consensus 767 l~~L~~L~l~~c~~ 780 (839)
+++|++|+++++|-
T Consensus 467 l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 467 LTSLQKIWLHTNPW 480 (520)
T ss_dssp CTTCCEEECCSSCB
T ss_pred CCcccEEECcCCCC
Confidence 89999999999974
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=3.7e-22 Score=223.78 Aligned_cols=311 Identities=18% Similarity=0.220 Sum_probs=231.6
Q ss_pred cEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccccc-CccccCCCCCcEEEccCCCcCC--CcccCCCCCCCEEEccC
Q 003203 409 DFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSL-PPSVHLLSNLQTLCLDQCVVGD--ISIIGNLKKLEILSLVD 485 (839)
Q Consensus 409 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~ 485 (839)
+.+..+++. ...+|..+ .+++++|+|++|.+..+ |..+.++++|++|++++|.+.. +..++++++|++|++++
T Consensus 14 ~~v~c~~~~-l~~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKR-FVAVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCC-CSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCC-cCcCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 445555443 56778754 46899999999999977 5689999999999999998887 47899999999999999
Q ss_pred CCCCCCchh-hcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCCEE
Q 003203 486 SDIERLPNE-IGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTL 564 (839)
Q Consensus 486 ~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L 564 (839)
|.++.+|.. +.++++|++|++++|. +..+++..++++++|++|++++|.+.... ...+..+++|+.|
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------~~~~~~l~~L~~L 157 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYIS-----------HRAFSGLNSLEQL 157 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEEC-----------TTSSTTCTTCCEE
T ss_pred CcCCccCcccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeC-----------hhhccCCCCCCEE
Confidence 999999875 6899999999999987 66666555899999999999999875322 2457889999999
Q ss_pred EEEeccccCCCccccc--cccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHH-HHHHhcccceEEeccccCchhhc
Q 003203 565 EIQIQDAMILPKGLFS--KKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDE-ILMQLKGIEHLYLDEVPGIKNVL 641 (839)
Q Consensus 565 ~l~~~~~~~~~~~~~~--~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~ 641 (839)
++++|.+..++...+. .+|+.|++ ..+....... .+..+++|+.|++.++.......
T Consensus 158 ~l~~n~l~~~~~~~l~~l~~L~~L~l--------------------~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 158 TLEKCNLTSIPTEALSHLHGLIVLRL--------------------RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp EEESCCCSSCCHHHHTTCTTCCEEEE--------------------ESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred ECCCCcCcccChhHhcccCCCcEEeC--------------------CCCcCcEeChhhcccCcccceeeCCCCccccccC
Confidence 9999999888764332 44555544 4333222211 33457889999999887766554
Q ss_pred cccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhcccccccccccccccccccCCCCEEEEecCCCccc
Q 003203 642 YDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICHSQLTAVSFCNLKIIKVRNCDRLKN 721 (839)
Q Consensus 642 ~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~c~~L~~ 721 (839)
... ....+|++|++++|. +..++. ..+..+++|+.|+++++. ++.+... ....+++|++|++++| +++.
T Consensus 218 ~~~--~~~~~L~~L~l~~n~-l~~~~~----~~~~~l~~L~~L~Ls~n~-l~~~~~~--~~~~l~~L~~L~L~~n-~l~~ 286 (477)
T 2id5_A 218 PNC--LYGLNLTSLSITHCN-LTAVPY----LAVRHLVYLRFLNLSYNP-ISTIEGS--MLHELLRLQEIQLVGG-QLAV 286 (477)
T ss_dssp TTT--TTTCCCSEEEEESSC-CCSCCH----HHHTTCTTCCEEECCSSC-CCEECTT--SCTTCTTCCEEECCSS-CCSE
T ss_pred ccc--ccCccccEEECcCCc-ccccCH----HHhcCccccCeeECCCCc-CCccChh--hccccccCCEEECCCC-ccce
Confidence 432 234599999999985 333321 245678999999999864 5555332 2457899999999996 4666
Q ss_pred ccchhhhhcCCCccEEEEecccchHHHhhcccCCccccCCCccccccccceeeccccc
Q 003203 722 VFSFSIARGLPQLQTITVIKCKNVEEIFMMERDGYVDCKEVNKIEFSQLRSLTLKFLP 779 (839)
Q Consensus 722 l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 779 (839)
+.+. .+..+++|+.|+++++ .++.++ +.....+++|++|++.++|
T Consensus 287 ~~~~-~~~~l~~L~~L~L~~N-~l~~~~-----------~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 287 VEPY-AFRGLNYLRVLNVSGN-QLTTLE-----------ESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp ECTT-TBTTCTTCCEEECCSS-CCSCCC-----------GGGBSCGGGCCEEECCSSC
T ss_pred ECHH-HhcCcccCCEEECCCC-cCceeC-----------HhHcCCCcccCEEEccCCC
Confidence 6543 3578999999999988 454432 1223458999999999886
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=1.3e-22 Score=221.05 Aligned_cols=302 Identities=18% Similarity=0.205 Sum_probs=238.2
Q ss_pred cccccceEEecCCCCCCCCCCC--CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccC-ccccCCCCCcE
Q 003203 382 ILKNCSAVFLNDIKTGVLPEGL--EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLP-PSVHLLSNLQT 458 (839)
Q Consensus 382 ~~~~~~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~ 458 (839)
.+.+++.+.+.++.+..+|... .+++|++|++++|.. ..++...|.++++|++|++++|.+..+| ..++.+++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcc-cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 3578999999999999999864 799999999999874 6677767899999999999999999775 56899999999
Q ss_pred EEccCCCcCCCc--ccCCCCCCCEEEccCCCCCCCc-hhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCc
Q 003203 459 LCLDQCVVGDIS--IIGNLKKLEILSLVDSDIERLP-NEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTS 535 (839)
Q Consensus 459 L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~ 535 (839)
|++++|.+..++ .++++++|++|++++|.++.++ ..+..+++|++|++++|. ++.++ ++.+++|+.|++++|.
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNL 197 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECCSSC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeeccccc
Confidence 999999999843 3689999999999999999775 458999999999999986 66665 5788999999999987
Q ss_pred cccccccccccccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcc
Q 003203 536 VKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIY 615 (839)
Q Consensus 536 ~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~ 615 (839)
+. .+...++|+.|++++|.+..++... .++|+.|++..+....
T Consensus 198 l~----------------~~~~~~~L~~L~l~~n~l~~~~~~~---------------------~~~L~~L~l~~n~l~~ 240 (390)
T 3o6n_A 198 LS----------------TLAIPIAVEELDASHNSINVVRGPV---------------------NVELTILKLQHNNLTD 240 (390)
T ss_dssp CS----------------EEECCSSCSEEECCSSCCCEEECCC---------------------CSSCCEEECCSSCCCC
T ss_pred cc----------------ccCCCCcceEEECCCCeeeeccccc---------------------cccccEEECCCCCCcc
Confidence 64 2345568999999999887665322 2455666666554433
Q ss_pred hHHHHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhccccccccc
Q 003203 616 LDEILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKI 695 (839)
Q Consensus 616 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~ 695 (839)
. ..+..+++|+.|+++++.-....... ...+++|++|++++|. +..++. ....+|+|+.|+++++ .++.+
T Consensus 241 ~-~~l~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~-l~~~~~-----~~~~l~~L~~L~L~~n-~l~~~ 310 (390)
T 3o6n_A 241 T-AWLLNYPGLVEVDLSYNELEKIMYHP--FVKMQRLERLYISNNR-LVALNL-----YGQPIPTLKVLDLSHN-HLLHV 310 (390)
T ss_dssp C-GGGGGCTTCSEEECCSSCCCEEESGG--GTTCSSCCEEECCSSC-CCEEEC-----SSSCCTTCCEEECCSS-CCCCC
T ss_pred c-HHHcCCCCccEEECCCCcCCCcChhH--ccccccCCEEECCCCc-CcccCc-----ccCCCCCCCEEECCCC-cceec
Confidence 2 35567889999999886543322222 3678999999999985 444543 3467899999999997 46655
Q ss_pred ccccccccccCCCCEEEEecCCCcccccchhhhhcCCCccEEEEeccc
Q 003203 696 CHSQLTAVSFCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKCK 743 (839)
Q Consensus 696 ~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 743 (839)
+. ....+++|++|++++|. ++.++ +..+++|+.|++++++
T Consensus 311 ~~---~~~~l~~L~~L~L~~N~-i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 311 ER---NQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp GG---GHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred Cc---cccccCcCCEEECCCCc-cceeC----chhhccCCEEEcCCCC
Confidence 33 25678999999999975 66664 3678999999999864
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=3.1e-22 Score=233.58 Aligned_cols=144 Identities=24% Similarity=0.286 Sum_probs=122.9
Q ss_pred ccccccceEEecCCCCCCCCCC-C-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCc-cccCCCCCc
Q 003203 381 DILKNCSAVFLNDIKTGVLPEG-L-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPP-SVHLLSNLQ 457 (839)
Q Consensus 381 ~~~~~~~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~ 457 (839)
..+.+++++++++|.+..+|.. + ++++|++|++++|. +..+++..|.++++|++|+|++|.++.+|. .|.++++|+
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence 4567899999999999999863 3 89999999999987 477888888999999999999999999876 579999999
Q ss_pred EEEccCCCcCCC--cccCCCCCCCEEEccCCCCCC--CchhhcCCCccCeEecCCCcCCCccCchhhcCcccc
Q 003203 458 TLCLDQCVVGDI--SIIGNLKKLEILSLVDSDIER--LPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQL 526 (839)
Q Consensus 458 ~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L 526 (839)
+|++++|.+..+ ..++++++|++|++++|.++. +|..++.+++|++|++++|. ++.+++..+..+.++
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQM 199 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTC
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccchhhh
Confidence 999999999884 458999999999999999874 57889999999999999986 666655445554443
No 38
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=1.4e-21 Score=234.02 Aligned_cols=271 Identities=15% Similarity=0.175 Sum_probs=157.3
Q ss_pred CCCCEEEccCCCCCCC-chhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccccccccchhh
Q 003203 476 KKLEILSLVDSDIERL-PNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQE 554 (839)
Q Consensus 476 ~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 554 (839)
++|++|++++|.+..+ |..+..+++|++|++++|. ++.+++..++.+++|++|++++|.+....+ ..
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------~~ 333 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNLLGELYS-----------SN 333 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCEECTTTTTTCSSCCEEEEESCCCSCCCS-----------CS
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCCCChHHhcCCCCCCEEECCCCCCCccCH-----------HH
Confidence 4566666666655543 3445667777777777665 455544446667777777777666542211 23
Q ss_pred hccCCCCCEEEEEeccccCCCcccc--ccccceEEEE-------------------EcCCCCCCCCCCCccEEEecccCC
Q 003203 555 LRHLSQLTTLEIQIQDAMILPKGLF--SKKLERYKIY-------------------IGDEWDWSGKSDNTRALKLKLCSS 613 (839)
Q Consensus 555 l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~l~l~-------------------~~~~~~~~~~~~~l~~L~l~~~~~ 613 (839)
+..+++|+.|++++|.+..++...+ .++|+.|+++ .+..........+++.++++.+..
T Consensus 334 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l 413 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413 (844)
T ss_dssp CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCC
T ss_pred hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCcc
Confidence 4444555555555554444443322 1444444444 433333333344555555554443
Q ss_pred cch--HHHHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhccccc
Q 003203 614 IYL--DEILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIH 691 (839)
Q Consensus 614 ~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~ 691 (839)
... ......+++|+.|++.++.-.. .........+++|+.|++++|..............+..+++|+.|+++++ .
T Consensus 414 ~~l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~ 491 (844)
T 3j0a_A 414 ENLDILYFLLRVPHLQILILNQNRFSS-CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-Y 491 (844)
T ss_dssp CSSTTHHHHTTCTTCCEEEEESCCCCC-CCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-H
T ss_pred ccCchhhhhhcCCccceeeCCCCcccc-cccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC-c
Confidence 332 2245578889999988765332 22121224478899999998853221111111224667899999999986 5
Q ss_pred ccccccccccccccCCCCEEEEecCCCcccccchhhhhcCCCccEEEEecccchHHHhhcccCCccccCCCccccccccc
Q 003203 692 MEKICHSQLTAVSFCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKCKNVEEIFMMERDGYVDCKEVNKIEFSQLR 771 (839)
Q Consensus 692 l~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~l~~L~ 771 (839)
++.++... ...+++|+.|+++++ +++.+++..+ .++|+.|+++++. ++.+. + ..+++|+
T Consensus 492 l~~~~~~~--~~~l~~L~~L~Ls~N-~l~~l~~~~~---~~~L~~L~Ls~N~-l~~~~-----------~---~~~~~L~ 550 (844)
T 3j0a_A 492 LNSLPPGV--FSHLTALRGLSLNSN-RLTVLSHNDL---PANLEILDISRNQ-LLAPN-----------P---DVFVSLS 550 (844)
T ss_dssp HTTCCTTS--SSSCCSCSEEEEESC-CCSSCCCCCC---CSCCCEEEEEEEC-CCCCC-----------S---CCCSSCC
T ss_pred ccccChhH--ccchhhhheeECCCC-CCCccChhhh---hccccEEECCCCc-CCCCC-----------h---hHhCCcC
Confidence 66554332 457899999999986 6887766432 2899999999873 33221 1 1367899
Q ss_pred eeeccccccc
Q 003203 772 SLTLKFLPRL 781 (839)
Q Consensus 772 ~L~l~~c~~L 781 (839)
.|++.++|-.
T Consensus 551 ~l~l~~Np~~ 560 (844)
T 3j0a_A 551 VLDITHNKFI 560 (844)
T ss_dssp EEEEEEECCC
T ss_pred EEEecCCCcc
Confidence 9999887643
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=7e-22 Score=218.27 Aligned_cols=300 Identities=17% Similarity=0.140 Sum_probs=210.7
Q ss_pred CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCCCcCCCcccCCCCCCCEEEc
Q 003203 404 EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGDISIIGNLKKLEILSL 483 (839)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l 483 (839)
.+++|++|++++|.. ..+| .+..+++|++|++++|.++.+| ++.+++|++|++++|.+..++ ++++++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~l-~~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSI-TDMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCC-CCCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCc-ccCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEEC
Confidence 678999999999875 4566 3689999999999999999886 899999999999999998875 899999999999
Q ss_pred cCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCCE
Q 003203 484 VDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTT 563 (839)
Q Consensus 484 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~ 563 (839)
++|.++.+| ++++++|++|++++|. ++.++ ++++++|++|++++|...... .+..+++|+.
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~~~~-------------~~~~l~~L~~ 174 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNKKITKL-------------DVTPQTQLTT 174 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCSCCCCC-------------CCTTCTTCCE
T ss_pred CCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCCccccc-------------ccccCCcCCE
Confidence 999999886 8999999999999987 67664 789999999999999643111 3778899999
Q ss_pred EEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHHHHHHhcccceEEeccccCchhhccc
Q 003203 564 LEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDEILMQLKGIEHLYLDEVPGIKNVLYD 643 (839)
Q Consensus 564 L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 643 (839)
|++++|.+..+| ....++|+.+.+.. +..... .+..+++|+.|+++++.-.. +
T Consensus 175 L~ls~n~l~~l~-l~~l~~L~~L~l~~--------------------N~l~~~--~l~~l~~L~~L~Ls~N~l~~-i--- 227 (457)
T 3bz5_A 175 LDCSFNKITELD-VSQNKLLNRLNCDT--------------------NNITKL--DLNQNIQLTFLDCSSNKLTE-I--- 227 (457)
T ss_dssp EECCSSCCCCCC-CTTCTTCCEEECCS--------------------SCCSCC--CCTTCTTCSEEECCSSCCSC-C---
T ss_pred EECCCCccceec-cccCCCCCEEECcC--------------------CcCCee--ccccCCCCCEEECcCCcccc-c---
Confidence 999999988876 22224555555443 322221 13345666677666643222 2
Q ss_pred cccCCCCCCCeeeeccCCCcceeecCCCcccccccc----------cchhhhhcccccccccccccccccccCCCCEEEE
Q 003203 644 LEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFP----------LLESLVLHNLIHMEKICHSQLTAVSFCNLKIIKV 713 (839)
Q Consensus 644 ~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p----------~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i 713 (839)
....+++|+.|++++|.. ..++ .+.++ +|+.|++++|..+..++ .+.+++|+.|++
T Consensus 228 -p~~~l~~L~~L~l~~N~l-~~~~-------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-----~~~l~~L~~L~L 293 (457)
T 3bz5_A 228 -DVTPLTQLTYFDCSVNPL-TELD-------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-----AEGCRKIKELDV 293 (457)
T ss_dssp -CCTTCTTCSEEECCSSCC-SCCC-------CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-----CTTCTTCCCCCC
T ss_pred -CccccCCCCEEEeeCCcC-CCcC-------HHHCCCCCEEeccCCCCCEEECCCCccCCccc-----ccccccCCEEEC
Confidence 134567777777777642 2221 22333 45666777776555543 356899999999
Q ss_pred ecCCCcccccchhhhhcCCCccEEEEecccchHHHhhcccCCccccCCCccccccccceeecccc
Q 003203 714 RNCDRLKNVFSFSIARGLPQLQTITVIKCKNVEEIFMMERDGYVDCKEVNKIEFSQLRSLTLKFL 778 (839)
Q Consensus 714 ~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 778 (839)
++|..+..++. ..++|+.|++++|++|+.+......-. ...+..+++|+.|+++++
T Consensus 294 s~n~~l~~l~~-----~~~~L~~L~l~~~~~L~~L~L~~N~l~----~l~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 294 THNTQLYLLDC-----QAAGITELDLSQNPKLVYLYLNNTELT----ELDVSHNTKLKSLSCVNA 349 (457)
T ss_dssp TTCTTCCEEEC-----TTCCCSCCCCTTCTTCCEEECTTCCCS----CCCCTTCTTCSEEECCSS
T ss_pred CCCcccceecc-----CCCcceEechhhcccCCEEECCCCccc----ccccccCCcCcEEECCCC
Confidence 99988777753 234555555555555544322211100 112456788888887765
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=1.5e-21 Score=223.22 Aligned_cols=149 Identities=21% Similarity=0.339 Sum_probs=119.7
Q ss_pred CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccC-ccccCCCCCcEEEccCCCcCC--CcccCCCCCCCE
Q 003203 404 EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLP-PSVHLLSNLQTLCLDQCVVGD--ISIIGNLKKLEI 480 (839)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~ 480 (839)
.+...++++++++.. ..+|..++ ++|++|++++|.+..+| ..++++++|++|++++|.+.. +..++++++|++
T Consensus 29 ~~~~~~~l~ls~~~L-~~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 29 SNELESMVDYSNRNL-THVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp ----CCEEECTTSCC-CSCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred ccCCCcEEEcCCCCC-ccCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 455568999998874 57887653 79999999999999886 589999999999999999988 467999999999
Q ss_pred EEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCc-hhhcCccccCeEEccCCccccccccccccccccchhhhccCC
Q 003203 481 LSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPP-NVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLS 559 (839)
Q Consensus 481 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~ 559 (839)
|++++|.++.+|.. .+++|++|++++|. ++.++. ..++++++|++|++++|.+.. ..+..+..+
T Consensus 105 L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~-----------~~~~~l~~L- 169 (562)
T 3a79_B 105 LDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ-----------LDLLPVAHL- 169 (562)
T ss_dssp EECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT-----------TTTGGGTTS-
T ss_pred EECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc-----------Cchhhhhhc-
Confidence 99999999999987 89999999999987 666652 349999999999999998751 112223333
Q ss_pred CCCEEEEEeccc
Q 003203 560 QLTTLEIQIQDA 571 (839)
Q Consensus 560 ~L~~L~l~~~~~ 571 (839)
+|+.|++++|.+
T Consensus 170 ~L~~L~L~~n~l 181 (562)
T 3a79_B 170 HLSCILLDLVSY 181 (562)
T ss_dssp CEEEEEEEESSC
T ss_pred eeeEEEeecccc
Confidence 348888888766
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=6.8e-22 Score=227.30 Aligned_cols=298 Identities=19% Similarity=0.237 Sum_probs=240.2
Q ss_pred ccccceEEecCCCCCCCCCCC--CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCc-cccCCCCCcEE
Q 003203 383 LKNCSAVFLNDIKTGVLPEGL--EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPP-SVHLLSNLQTL 459 (839)
Q Consensus 383 ~~~~~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L 459 (839)
+.+++.+.+.++.+..+|... .+++|++|++++|.. ..++...|+.+++|++|+|++|.+..+|+ .++.+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC-CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 567899999999999999864 799999999999874 56666677999999999999999998765 56999999999
Q ss_pred EccCCCcCCC-c-ccCCCCCCCEEEccCCCCCCCch-hhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcc
Q 003203 460 CLDQCVVGDI-S-IIGNLKKLEILSLVDSDIERLPN-EIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSV 536 (839)
Q Consensus 460 ~l~~~~~~~~-~-~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~ 536 (839)
++++|.+..+ + .++++++|++|++++|.++.++. .++++++|++|++++|. ++.++ ++.+++|+.|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhcccCcc
Confidence 9999999884 3 36899999999999999997754 68999999999999986 67665 56789999999999876
Q ss_pred ccccccccccccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCC--CCCCCCCCccEEEecccCCc
Q 003203 537 KWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEW--DWSGKSDNTRALKLKLCSSI 614 (839)
Q Consensus 537 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~l~~L~l~~~~~~ 614 (839)
. .+...++|+.|++++|.+..++.... .+|+.|.+..+... .+...+++|+.|+++.+...
T Consensus 205 ~----------------~l~~~~~L~~L~ls~n~l~~~~~~~~-~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 205 S----------------TLAIPIAVEELDASHNSINVVRGPVN-VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE 267 (597)
T ss_dssp S----------------EEECCTTCSEEECCSSCCCEEECSCC-SCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred c----------------cccCCchhheeeccCCcccccccccC-CCCCEEECCCCCCCCChhhccCCCCCEEECCCCccC
Confidence 4 24456789999999998887765443 68888888776533 45677899999999988765
Q ss_pred chH-HHHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhccccccc
Q 003203 615 YLD-EILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHME 693 (839)
Q Consensus 615 ~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~ 693 (839)
... ..+..+++|+.|+++++.- ..+... ...+|+|+.|+|++|.. ..++. ....+++|+.|+++++. +.
T Consensus 268 ~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~--~~~l~~L~~L~Ls~N~l-~~i~~-----~~~~l~~L~~L~L~~N~-l~ 337 (597)
T 3oja_B 268 KIMYHPFVKMQRLERLYISNNRL-VALNLY--GQPIPTLKVLDLSHNHL-LHVER-----NQPQFDRLENLYLDHNS-IV 337 (597)
T ss_dssp EEESGGGTTCSSCCEEECTTSCC-CEEECS--SSCCTTCCEEECCSSCC-CCCGG-----GHHHHTTCSEEECCSSC-CC
T ss_pred CCCHHHhcCccCCCEEECCCCCC-CCCCcc--cccCCCCcEEECCCCCC-CccCc-----ccccCCCCCEEECCCCC-CC
Confidence 553 3677889999999998643 333322 35689999999999964 34432 45689999999999975 44
Q ss_pred ccccccccccccCCCCEEEEecCC
Q 003203 694 KICHSQLTAVSFCNLKIIKVRNCD 717 (839)
Q Consensus 694 ~~~~~~~~~~~~~~L~~L~i~~c~ 717 (839)
.+ +...+++|+.|++++++
T Consensus 338 ~~-----~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 338 TL-----KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CC-----CCCTTCCCSEEECCSSC
T ss_pred Cc-----ChhhcCCCCEEEeeCCC
Confidence 43 25678999999999976
No 42
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=7.1e-21 Score=209.98 Aligned_cols=176 Identities=23% Similarity=0.246 Sum_probs=84.5
Q ss_pred cccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccC
Q 003203 384 KNCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQ 463 (839)
Q Consensus 384 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~ 463 (839)
.+++.+++++|.+..+|.. .++|+.|++++|.. ..++. -.++|++|++++|.+..+| .++++++|++|++++
T Consensus 91 ~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l-~~l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL--PQSLKSLLVDNNNL-KALSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCC-SCCCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS
T ss_pred CCCCEEEccCCcCCccccc--cCCCcEEECCCCcc-CcccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCC
Confidence 4455555555555545532 24555555555432 22221 1135555555555555555 355555555555555
Q ss_pred CCcCCCcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccc
Q 003203 464 CVVGDISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGL 543 (839)
Q Consensus 464 ~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~ 543 (839)
|.+..++.. ..+|++|++++|.++.+| .++++++|++|++++|. ++.+|.. .++|++|++++|.+. .
T Consensus 163 N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~----~~~L~~L~l~~n~l~-~---- 229 (454)
T 1jl5_A 163 NSLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDL----PLSLESIVAGNNILE-E---- 229 (454)
T ss_dssp SCCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCC----CTTCCEEECCSSCCS-S----
T ss_pred CcCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCC----cCcccEEECcCCcCC-c----
Confidence 555443221 235555555555555554 35555555555555544 3444431 135555555555442 0
Q ss_pred cccccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEE
Q 003203 544 NIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYI 590 (839)
Q Consensus 544 ~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~ 590 (839)
+..++.+++|+.|++++|.+..+|.. ..+|+.+++..
T Consensus 230 --------lp~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~ 266 (454)
T 1jl5_A 230 --------LPELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRD 266 (454)
T ss_dssp --------CCCCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCS
T ss_pred --------ccccCCCCCCCEEECCCCcCCccccc--ccccCEEECCC
Confidence 11244555555555555555554432 13444444433
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=3.6e-21 Score=203.22 Aligned_cols=222 Identities=22% Similarity=0.323 Sum_probs=150.0
Q ss_pred CCCCccEEEeCCCcccccCccccCCCCCcEEEccCCCcCC-CcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecC
Q 003203 429 GMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGD-ISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLS 507 (839)
Q Consensus 429 ~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 507 (839)
...++++|++++|.+..+|..++++++|++|++++|.+.. |..++++++|++|++++|.++.+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 3567889999999988889888889999999999998877 466888999999999999888899999999999999999
Q ss_pred CCcCCCccCchhhcC---------ccccCeEEccCCccccccccccccccccchhhhccCCCCCEEEEEeccccCCCccc
Q 003203 508 FCRNLKVIPPNVISK---------LTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGL 578 (839)
Q Consensus 508 ~~~~l~~~p~~~l~~---------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~ 578 (839)
+|..++.+|.. ++. +++|++|++++|.+. . ....+..+++|+.|++++|.+..+|..
T Consensus 159 ~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~-~-----------lp~~l~~l~~L~~L~L~~N~l~~l~~~- 224 (328)
T 4fcg_A 159 ACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR-S-----------LPASIANLQNLKSLKIRNSPLSALGPA- 224 (328)
T ss_dssp EETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC-C-----------CCGGGGGCTTCCEEEEESSCCCCCCGG-
T ss_pred CCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC-c-----------chHhhcCCCCCCEEEccCCCCCcCchh-
Confidence 98878888875 433 555555555555443 1 113344555555555555544433321
Q ss_pred cccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHHHHHHhcccceEEeccccCchhhccccccCCCCCCCeeeec
Q 003203 579 FSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDEILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQ 658 (839)
Q Consensus 579 ~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~ 658 (839)
...+++|++|+++
T Consensus 225 -------------------------------------------------------------------l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 225 -------------------------------------------------------------------IHHLPKLEELDLR 237 (328)
T ss_dssp -------------------------------------------------------------------GGGCTTCCEEECT
T ss_pred -------------------------------------------------------------------hccCCCCCEEECc
Confidence 1234555555555
Q ss_pred cCCCcceeecCCCcccccccccchhhhhcccccccccccccccccccCCCCEEEEecCCCcccccchhhhhcCCCccEEE
Q 003203 659 NNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICHSQLTAVSFCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTIT 738 (839)
Q Consensus 659 ~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~ 738 (839)
+|.....++. .++.+++|+.|++++|.....++.. ...+++|++|++++|+.+..+|. .+.++++|+.+.
T Consensus 238 ~n~~~~~~p~-----~~~~l~~L~~L~L~~n~~~~~~p~~---~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~ 307 (328)
T 4fcg_A 238 GCTALRNYPP-----IFGGRAPLKRLILKDCSNLLTLPLD---IHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIIL 307 (328)
T ss_dssp TCTTCCBCCC-----CTTCCCCCCEEECTTCTTCCBCCTT---GGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEE
T ss_pred CCcchhhhHH-----HhcCCCCCCEEECCCCCchhhcchh---hhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEe
Confidence 5554443332 3445566666666665555544322 45677778888887777777765 357777777777
Q ss_pred Eec
Q 003203 739 VIK 741 (839)
Q Consensus 739 l~~ 741 (839)
+..
T Consensus 308 l~~ 310 (328)
T 4fcg_A 308 VPP 310 (328)
T ss_dssp CCG
T ss_pred CCH
Confidence 653
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=1.7e-20 Score=218.75 Aligned_cols=148 Identities=21% Similarity=0.309 Sum_probs=124.4
Q ss_pred eEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCc-cccCCCCCcEEEccCCCc
Q 003203 388 AVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPP-SVHLLSNLQTLCLDQCVV 466 (839)
Q Consensus 388 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~ 466 (839)
.++-++..+..+|..+. +++++|++++|. +..++...|.++++|++|+|++|.++.+|+ .|.++++|++|+|++|.+
T Consensus 35 ~~~c~~~~l~~vP~~lp-~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP-FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEECCCCCcCccCCCCC-cCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 34444556678887552 479999999987 478888888999999999999999998865 689999999999999999
Q ss_pred CCC--cccCCCCCCCEEEccCCCCCCCch-hhcCCCccCeEecCCCcCCCccC-chhhcCccccCeEEccCCcccc
Q 003203 467 GDI--SIIGNLKKLEILSLVDSDIERLPN-EIGQLTQLRCLDLSFCRNLKVIP-PNVISKLTQLEELYMGNTSVKW 538 (839)
Q Consensus 467 ~~~--~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p-~~~l~~l~~L~~L~l~~~~~~~ 538 (839)
..+ ..|+++++|++|++++|+++.+|. .++++++|++|++++|. ++.++ +..++.+++|++|++++|.+..
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccc
Confidence 883 568999999999999999999976 48999999999999987 54432 2338899999999999998753
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=4.9e-21 Score=203.43 Aligned_cols=290 Identities=16% Similarity=0.175 Sum_probs=188.3
Q ss_pred CccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccC-ccccCCCCCcEEEccCCCcCC--CcccCCCCCCCEEEc
Q 003203 407 QLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLP-PSVHLLSNLQTLCLDQCVVGD--ISIIGNLKKLEILSL 483 (839)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l 483 (839)
+++.+.++++. ...+|..+ .++|++|++++|.+..++ ..+.++++|++|++++|.+.. +..++++++|++|++
T Consensus 34 ~l~~l~~~~~~-l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSC-CSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCC-ccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 67888887776 35677654 367888999998888774 478888999999999988877 367888899999999
Q ss_pred cCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCCE
Q 003203 484 VDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTT 563 (839)
Q Consensus 484 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~ 563 (839)
++|.++.+|..+. ++|++|++++|. ++.+|...++++++|++|++++|.+... ......+..+ +|+.
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENS---------GFEPGAFDGL-KLNY 176 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGG---------GSCTTSSCSC-CCSC
T ss_pred CCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccC---------CCCcccccCC-ccCE
Confidence 9998888888765 789999998876 7777776688899999999988876410 1122345555 8888
Q ss_pred EEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHHHHHHhcccceEEeccccCchhhccc
Q 003203 564 LEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDEILMQLKGIEHLYLDEVPGIKNVLYD 643 (839)
Q Consensus 564 L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 643 (839)
|++++|.+..+|.... ++|+.|++.++.-. .....
T Consensus 177 L~l~~n~l~~l~~~~~--------------------------------------------~~L~~L~l~~n~i~-~~~~~ 211 (332)
T 2ft3_A 177 LRISEAKLTGIPKDLP--------------------------------------------ETLNELHLDHNKIQ-AIELE 211 (332)
T ss_dssp CBCCSSBCSSCCSSSC--------------------------------------------SSCSCCBCCSSCCC-CCCTT
T ss_pred EECcCCCCCccCcccc--------------------------------------------CCCCEEECCCCcCC-ccCHH
Confidence 8888888877764321 23444444443221 11111
Q ss_pred cccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhcccccccccccccccccccCCCCEEEEecCCCccccc
Q 003203 644 LEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICHSQLTAVSFCNLKIIKVRNCDRLKNVF 723 (839)
Q Consensus 644 ~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~ 723 (839)
....+++|++|++++|.. ..++. ..+..+++|+.|+++++ .++.++.. ...+++|++|+++++ .++.++
T Consensus 212 -~l~~l~~L~~L~L~~N~l-~~~~~----~~~~~l~~L~~L~L~~N-~l~~lp~~---l~~l~~L~~L~l~~N-~l~~~~ 280 (332)
T 2ft3_A 212 -DLLRYSKLYRLGLGHNQI-RMIEN----GSLSFLPTLRELHLDNN-KLSRVPAG---LPDLKLLQVVYLHTN-NITKVG 280 (332)
T ss_dssp -SSTTCTTCSCCBCCSSCC-CCCCT----TGGGGCTTCCEEECCSS-CCCBCCTT---GGGCTTCCEEECCSS-CCCBCC
T ss_pred -HhcCCCCCCEEECCCCcC-CcCCh----hHhhCCCCCCEEECCCC-cCeecChh---hhcCccCCEEECCCC-CCCccC
Confidence 124567777777777642 22211 13456677777777765 34554322 456778888888775 466664
Q ss_pred chhhhh-----cCCCccEEEEecccchHHHhhcccCCccccCCCccccccccceeeccccc
Q 003203 724 SFSIAR-----GLPQLQTITVIKCKNVEEIFMMERDGYVDCKEVNKIEFSQLRSLTLKFLP 779 (839)
Q Consensus 724 ~~~~~~-----~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 779 (839)
...+.. ..++|+.|++.+++-.. .... +.....+++|+.|++.++.
T Consensus 281 ~~~~~~~~~~~~~~~l~~L~l~~N~~~~-~~~~---------~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 281 VNDFCPVGFGVKRAYYNGISLFNNPVPY-WEVQ---------PATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTSSSCSSCCSSSCCBSEEECCSSSSCG-GGSC---------GGGGTTBCCSTTEEC----
T ss_pred hhHccccccccccccccceEeecCcccc-cccC---------cccccccchhhhhhccccc
Confidence 422211 15678888888776321 1110 2334457888888888775
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=2.4e-20 Score=205.81 Aligned_cols=330 Identities=18% Similarity=0.135 Sum_probs=212.7
Q ss_pred ccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCC
Q 003203 385 NCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQC 464 (839)
Q Consensus 385 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~ 464 (839)
+++++.++++.+..+|.. .++|+.|++++|.. ..+|. .+++|++|++++|.+..+|.. .++|++|++++|
T Consensus 72 ~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l-~~lp~----~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n 141 (454)
T 1jl5_A 72 QAHELELNNLGLSSLPEL--PPHLESLVASCNSL-TELPE----LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN 141 (454)
T ss_dssp TCSEEECTTSCCSCCCSC--CTTCSEEECCSSCC-SSCCC----CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS
T ss_pred CCCEEEecCCccccCCCC--cCCCCEEEccCCcC-Ccccc----ccCCCcEEECCCCccCcccCC---CCCCCEEECcCC
Confidence 467888888888877763 47888888888765 34664 247888888888888877643 268888899888
Q ss_pred CcCCCcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcccccccccc
Q 003203 465 VVGDISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLN 544 (839)
Q Consensus 465 ~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 544 (839)
.+..++.++++++|++|++++|.++.+|..+ .+|++|++++|. ++.+|. ++++++|++|++++|.+.. ++
T Consensus 142 ~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~~--~~~l~~L~~L~l~~N~l~~-l~--- 211 (454)
T 1jl5_A 142 QLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQ-LEELPE--LQNLPFLTAIYADNNSLKK-LP--- 211 (454)
T ss_dssp CCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC-CSSCCC--CTTCTTCCEEECCSSCCSS-CC---
T ss_pred CCCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCc-CCcCcc--ccCCCCCCEEECCCCcCCc-CC---
Confidence 8888667888888999999888888887643 578888888875 666773 7888888999888887652 11
Q ss_pred ccccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHHHHHHhc
Q 003203 545 IERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDEILMQLK 624 (839)
Q Consensus 545 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~ 624 (839)
...++|+.|++++|.+..+|.....++|+.+++..+.........++|+.|+++.+.....+. .++
T Consensus 212 -----------~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~---~~~ 277 (454)
T 1jl5_A 212 -----------DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPE---LPQ 277 (454)
T ss_dssp -----------CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCC---CCT
T ss_pred -----------CCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCc---ccC
Confidence 012478888888888888876444578888888776554445556788888888776544322 247
Q ss_pred ccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCccccccc-ccchhhhhccccccccccccccccc
Q 003203 625 GIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAF-PLLESLVLHNLIHMEKICHSQLTAV 703 (839)
Q Consensus 625 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~-p~L~~L~l~~~~~l~~~~~~~~~~~ 703 (839)
+|+.|+++++.- ..+. ...++|+.|++++|. +..++ .+ ++|+.|+++++ .++.++.
T Consensus 278 ~L~~L~ls~N~l-~~l~-----~~~~~L~~L~l~~N~-l~~i~---------~~~~~L~~L~Ls~N-~l~~lp~------ 334 (454)
T 1jl5_A 278 SLTFLDVSENIF-SGLS-----ELPPNLYYLNASSNE-IRSLC---------DLPPSLEELNVSNN-KLIELPA------ 334 (454)
T ss_dssp TCCEEECCSSCC-SEES-----CCCTTCCEEECCSSC-CSEEC---------CCCTTCCEEECCSS-CCSCCCC------
T ss_pred cCCEEECcCCcc-Cccc-----CcCCcCCEEECcCCc-CCccc---------CCcCcCCEEECCCC-ccccccc------
Confidence 888888887542 2211 112688888888874 23222 23 47888888874 3554422
Q ss_pred ccCCCCEEEEecCCCcccccchhhhhcCCCccEEEEecccchHHHhhcccCCccccCCCcccc-------------cccc
Q 003203 704 SFCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKCKNVEEIFMMERDGYVDCKEVNKIE-------------FSQL 770 (839)
Q Consensus 704 ~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~-------------l~~L 770 (839)
.+++|++|++++| .++.++. .+++|++|+++++. ++.++.. +..+.. +++|
T Consensus 335 ~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~-l~~l~~i---------p~~l~~L~~n~~~~~i~~~~~~L 398 (454)
T 1jl5_A 335 LPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNP-LREFPDI---------PESVEDLRMNSHLAEVPELPQNL 398 (454)
T ss_dssp CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSSCCCC---------CTTCCEEECCC------------
T ss_pred cCCcCCEEECCCC-ccccccc-----hhhhccEEECCCCC-CCcCCCC---------hHHHHhhhhcccccccccccCcC
Confidence 2578888888886 4666654 36888888888764 3322110 111222 3789
Q ss_pred ceeecccccccc--ccccc
Q 003203 771 RSLTLKFLPRLR--SFYFQ 787 (839)
Q Consensus 771 ~~L~l~~c~~L~--~l~~~ 787 (839)
+.|++++++--. .+|..
T Consensus 399 ~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 399 KQLHVETNPLREFPDIPES 417 (454)
T ss_dssp -------------------
T ss_pred CEEECCCCcCCccccchhh
Confidence 999999886433 56654
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=3e-20 Score=197.22 Aligned_cols=290 Identities=17% Similarity=0.189 Sum_probs=173.9
Q ss_pred CccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCc-cccCCCCCcEEEccCCCcCC--CcccCCCCCCCEEEc
Q 003203 407 QLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPP-SVHLLSNLQTLCLDQCVVGD--ISIIGNLKKLEILSL 483 (839)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l 483 (839)
+++.+.++++. ...+|..+ .++|++|++++|.++.++. .++++++|++|++++|.+.. +..++++++|++|++
T Consensus 32 ~l~~l~~~~~~-l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLG-LEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSC-CCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCC-ccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 56666666554 34555433 3567788888888777655 67778888888888887776 356778888888888
Q ss_pred cCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCCE
Q 003203 484 VDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTT 563 (839)
Q Consensus 484 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~ 563 (839)
++|.++.+|..+. ++|++|++++|. ++.++...++++++|++|++++|.+.. .......+..+++|+.
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKS---------SGIENGAFQGMKKLSY 175 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCG---------GGBCTTGGGGCTTCCE
T ss_pred CCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCc---------cCcChhhccCCCCcCE
Confidence 8888887777654 678888888875 667776667888888888888877641 1122345677888888
Q ss_pred EEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHHHHHHhcccceEEeccccCchhhccc
Q 003203 564 LEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDEILMQLKGIEHLYLDEVPGIKNVLYD 643 (839)
Q Consensus 564 L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 643 (839)
|++++|.+..+|.... ++|+.|++.++.- ......
T Consensus 176 L~l~~n~l~~l~~~~~--------------------------------------------~~L~~L~l~~n~l-~~~~~~ 210 (330)
T 1xku_A 176 IRIADTNITTIPQGLP--------------------------------------------PSLTELHLDGNKI-TKVDAA 210 (330)
T ss_dssp EECCSSCCCSCCSSCC--------------------------------------------TTCSEEECTTSCC-CEECTG
T ss_pred EECCCCccccCCcccc--------------------------------------------ccCCEEECCCCcC-CccCHH
Confidence 8888887776664321 2334444433321 111110
Q ss_pred cccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhcccccccccccccccccccCCCCEEEEecCCCccccc
Q 003203 644 LEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICHSQLTAVSFCNLKIIKVRNCDRLKNVF 723 (839)
Q Consensus 644 ~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~ 723 (839)
....+++|++|++++|.. ..++. ..+..+++|+.|+++++ .++.++. ....+++|++|++++|. ++.++
T Consensus 211 -~~~~l~~L~~L~Ls~n~l-~~~~~----~~~~~l~~L~~L~L~~N-~l~~lp~---~l~~l~~L~~L~l~~N~-i~~~~ 279 (330)
T 1xku_A 211 -SLKGLNNLAKLGLSFNSI-SAVDN----GSLANTPHLRELHLNNN-KLVKVPG---GLADHKYIQVVYLHNNN-ISAIG 279 (330)
T ss_dssp -GGTTCTTCCEEECCSSCC-CEECT----TTGGGSTTCCEEECCSS-CCSSCCT---TTTTCSSCCEEECCSSC-CCCCC
T ss_pred -HhcCCCCCCEEECCCCcC-ceeCh----hhccCCCCCCEEECCCC-cCccCCh---hhccCCCcCEEECCCCc-CCccC
Confidence 124456666677666642 22211 13445666777777665 3444432 24456777777777753 55554
Q ss_pred chhhh-----hcCCCccEEEEecccchHHHhhcccCCccccCCCccccccccceeecccc
Q 003203 724 SFSIA-----RGLPQLQTITVIKCKNVEEIFMMERDGYVDCKEVNKIEFSQLRSLTLKFL 778 (839)
Q Consensus 724 ~~~~~-----~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 778 (839)
...+. ...++|+.|++.+.+-- ..... +.....+++|+.++++++
T Consensus 280 ~~~f~~~~~~~~~~~l~~l~l~~N~~~-~~~i~---------~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 280 SNDFCPPGYNTKKASYSGVSLFSNPVQ-YWEIQ---------PSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TTSSSCSSCCTTSCCCSEEECCSSSSC-GGGSC---------GGGGTTCCCGGGEEC---
T ss_pred hhhcCCcccccccccccceEeecCccc-ccccC---------ccccccccceeEEEeccc
Confidence 32221 12467778888776521 11110 223345777888887765
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=1.2e-20 Score=197.96 Aligned_cols=246 Identities=14% Similarity=0.166 Sum_probs=153.9
Q ss_pred cccceEEecCCCCC---CCCCCC-CCCCccEEeecC-CCCCCCCChhhhcCCCCccEEEeCCCccc-ccCccccCCCCCc
Q 003203 384 KNCSAVFLNDIKTG---VLPEGL-EYPQLDFFCMNS-KDPFFKMPENFFTGMSKLRGLALSEMQLL-SLPPSVHLLSNLQ 457 (839)
Q Consensus 384 ~~~~~l~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~ 457 (839)
.+++.++++++.+. .+|..+ .+++|++|++++ +.....+|.. +.++++|++|++++|.+. .+|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 45677777777764 356554 677777777774 5544455544 366777777777777776 6676777777777
Q ss_pred EEEccCCCcCC--CcccCCCCCCCEEEccCCCCC-CCchhhcCCC-ccCeEecCCCcCCCccCchhhcCccccCeEEccC
Q 003203 458 TLCLDQCVVGD--ISIIGNLKKLEILSLVDSDIE-RLPNEIGQLT-QLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGN 533 (839)
Q Consensus 458 ~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~ 533 (839)
+|++++|.+.. +..++++++|++|++++|.++ .+|..++.++ +|++|++++|...+.+|.. ++.++ |++|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcC
Confidence 77777776663 456677777777777777776 6677777776 7777777776633345544 66665 77777777
Q ss_pred CccccccccccccccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCC
Q 003203 534 TSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSS 613 (839)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~ 613 (839)
|.+... ....+..+++|+.|++++|.+...+..
T Consensus 207 N~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~~~~~------------------------------------ 239 (313)
T 1ogq_A 207 NMLEGD-----------ASVLFGSDKNTQKIHLAKNSLAFDLGK------------------------------------ 239 (313)
T ss_dssp SEEEEC-----------CGGGCCTTSCCSEEECCSSEECCBGGG------------------------------------
T ss_pred CcccCc-----------CCHHHhcCCCCCEEECCCCceeeecCc------------------------------------
Confidence 765422 224456667777777776665432211
Q ss_pred cchHHHHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhccccccc
Q 003203 614 IYLDEILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHME 693 (839)
Q Consensus 614 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~ 693 (839)
...+++|+.|++.++.-....+.. ...+++|++|++++|.....+|. ...+++|+.|++.+++.+.
T Consensus 240 ------~~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~Ls~N~l~~~ip~------~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 240 ------VGLSKNLNGLDLRNNRIYGTLPQG--LTQLKFLHSLNVSFNNLCGEIPQ------GGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp ------CCCCTTCCEEECCSSCCEECCCGG--GGGCTTCCEEECCSSEEEEECCC------STTGGGSCGGGTCSSSEEE
T ss_pred ------ccccCCCCEEECcCCcccCcCChH--HhcCcCCCEEECcCCcccccCCC------CccccccChHHhcCCCCcc
Confidence 122456666666665433232222 24567888888888764444442 2567778888887766544
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=4.5e-20 Score=194.82 Aligned_cols=172 Identities=22% Similarity=0.333 Sum_probs=135.0
Q ss_pred cccceEEecCCCCCCCCCCC-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEcc
Q 003203 384 KNCSAVFLNDIKTGVLPEGL-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLD 462 (839)
Q Consensus 384 ~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 462 (839)
..++.++++++.+..+|..+ .+++|++|++++|... .+|..+ .++++|++|++++|.+..+|..++++++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 56888999999998888766 7889999999888764 777654 78889999999999888888888999999999999
Q ss_pred CCCcCC--CcccC---------CCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEc
Q 003203 463 QCVVGD--ISIIG---------NLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYM 531 (839)
Q Consensus 463 ~~~~~~--~~~~~---------~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l 531 (839)
+|.+.. +..++ ++++|++|++++|.++.+|..++++++|++|++++|. ++.+|.. ++++++|++|++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~L~L 236 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEELDL 236 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCEEEC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCEEEC
Confidence 875444 34443 4888999999988888888888888899999998876 6677776 888888888888
Q ss_pred cCCccccccccccccccccchhhhccCCCCCEEEEEecc
Q 003203 532 GNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQD 570 (839)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 570 (839)
++|.+....+ ..+..+++|+.|++++|.
T Consensus 237 s~n~~~~~~p-----------~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 237 RGCTALRNYP-----------PIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp TTCTTCCBCC-----------CCTTCCCCCCEEECTTCT
T ss_pred cCCcchhhhH-----------HHhcCCCCCCEEECCCCC
Confidence 8887653322 345566666666666544
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=2.3e-19 Score=192.31 Aligned_cols=258 Identities=16% Similarity=0.205 Sum_probs=170.0
Q ss_pred EEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccccc-CccccCCCCCcEEEccCCCcC
Q 003203 389 VFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSL-PPSVHLLSNLQTLCLDQCVVG 467 (839)
Q Consensus 389 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~ 467 (839)
.+.+++.+..+|..+. ++|++|++++|.. ..++...+.++++|++|++++|.+..+ |..++++++|++|++++|.+.
T Consensus 36 c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT-EAVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EECCSTTCSSCCTTCC-TTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred eeCCCCCccccccccc-ccCcEEECCCCcC-cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 5666777777776543 5788888888764 556666678888888888888888866 456888888888888888887
Q ss_pred CC-c-ccCCCCCCCEEEccCCCCCCCch--hhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccc
Q 003203 468 DI-S-IIGNLKKLEILSLVDSDIERLPN--EIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGL 543 (839)
Q Consensus 468 ~~-~-~~~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~ 543 (839)
.+ + .++++++|++|++++|.++.+|. .+.++++|++|++++|..++.+++..++++++|++|++++|.+....
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--- 190 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE--- 190 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC---
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC---
Confidence 74 2 37788888888888888888876 67788888888888876677776655788888888888888765322
Q ss_pred cccccccchhhhccCCCCCEEEEEeccccCCCcccc--ccccceEEEEEcCCCCC-------CCCCCCccEEEecccCCc
Q 003203 544 NIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLF--SKKLERYKIYIGDEWDW-------SGKSDNTRALKLKLCSSI 614 (839)
Q Consensus 544 ~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~l~l~~~~~~~~-------~~~~~~l~~L~l~~~~~~ 614 (839)
...+..+++|+.|++++|.+..++.... .++|+.|++..+..... ......++.+++..+...
T Consensus 191 --------~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~ 262 (353)
T 2z80_A 191 --------PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262 (353)
T ss_dssp --------TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCC
T ss_pred --------HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccccc
Confidence 2456777888888888888776665443 36777777766543221 112334555555543222
Q ss_pred c-----hHHHHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCC
Q 003203 615 Y-----LDEILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNP 661 (839)
Q Consensus 615 ~-----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 661 (839)
. .+..+..+++|+.|+++++.- ..+... ....+++|++|++++|+
T Consensus 263 ~~~l~~l~~~l~~l~~L~~L~Ls~N~l-~~i~~~-~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 263 DESLFQVMKLLNQISGLLELEFSRNQL-KSVPDG-IFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHHHHHHHTCTTCCEEECCSSCC-CCCCTT-TTTTCTTCCEEECCSSC
T ss_pred CcchhhhHHHHhcccCCCEEECCCCCC-CccCHH-HHhcCCCCCEEEeeCCC
Confidence 1 122344555666666655432 222211 11345566666666654
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=3.5e-20 Score=194.52 Aligned_cols=249 Identities=14% Similarity=0.158 Sum_probs=174.4
Q ss_pred CCccEEeecCCCCCC--CCChhhhcCCCCccEEEeCC-Cccc-ccCccccCCCCCcEEEccCCCcCC--CcccCCCCCCC
Q 003203 406 PQLDFFCMNSKDPFF--KMPENFFTGMSKLRGLALSE-MQLL-SLPPSVHLLSNLQTLCLDQCVVGD--ISIIGNLKKLE 479 (839)
Q Consensus 406 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~~~-~lp~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~ 479 (839)
.+++.|+++++.... .+|.. +.++++|++|++++ |.+. .+|..++++++|++|++++|.+.. +..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 578999999988765 66764 48899999999995 7777 778899999999999999998874 57789999999
Q ss_pred EEEccCCCCC-CCchhhcCCCccCeEecCCCcCCCccCchhhcCcc-ccCeEEccCCccccccccccccccccchhhhcc
Q 003203 480 ILSLVDSDIE-RLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLT-QLEELYMGNTSVKWEFEGLNIERSNASLQELRH 557 (839)
Q Consensus 480 ~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 557 (839)
+|++++|.++ .+|..+.++++|++|++++|...+.+|.. ++.++ +|++|++++|.+....+ ..+..
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~-----------~~~~~ 196 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIP-----------PTFAN 196 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECC-----------GGGGG
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCC-----------hHHhC
Confidence 9999999888 78888999999999999998744477766 78887 99999999998753333 44566
Q ss_pred CCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHHHHHHhcccceEEeccccCc
Q 003203 558 LSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDEILMQLKGIEHLYLDEVPGI 637 (839)
Q Consensus 558 l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 637 (839)
++ |+.|++++|.+...+... +..+++|+.|++.++.-.
T Consensus 197 l~-L~~L~Ls~N~l~~~~~~~-----------------------------------------~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLEGDASVL-----------------------------------------FGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp CC-CSEEECCSSEEEECCGGG-----------------------------------------CCTTSCCSEEECCSSEEC
T ss_pred Cc-ccEEECcCCcccCcCCHH-----------------------------------------HhcCCCCCEEECCCCcee
Confidence 65 888888888766443221 122455666666554322
Q ss_pred hhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhcccccccccccccccccccCCCCEEEEecCC
Q 003203 638 KNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICHSQLTAVSFCNLKIIKVRNCD 717 (839)
Q Consensus 638 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~c~ 717 (839)
.... . ...+++|++|++++|.....++. .+..+++|+.|+++++.--..++. ...+++|+.|++.+++
T Consensus 235 ~~~~-~--~~~l~~L~~L~Ls~N~l~~~~p~-----~l~~l~~L~~L~Ls~N~l~~~ip~----~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 235 FDLG-K--VGLSKNLNGLDLRNNRIYGTLPQ-----GLTQLKFLHSLNVSFNNLCGEIPQ----GGNLQRFDVSAYANNK 302 (313)
T ss_dssp CBGG-G--CCCCTTCCEEECCSSCCEECCCG-----GGGGCTTCCEEECCSSEEEEECCC----STTGGGSCGGGTCSSS
T ss_pred eecC-c--ccccCCCCEEECcCCcccCcCCh-----HHhcCcCCCEEECcCCcccccCCC----CccccccChHHhcCCC
Confidence 2211 1 24567888888888754333332 345666777777776543223321 2456666666666665
Q ss_pred Cccc
Q 003203 718 RLKN 721 (839)
Q Consensus 718 ~L~~ 721 (839)
.+..
T Consensus 303 ~lc~ 306 (313)
T 1ogq_A 303 CLCG 306 (313)
T ss_dssp EEES
T ss_pred CccC
Confidence 4443
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=7e-19 Score=186.77 Aligned_cols=290 Identities=16% Similarity=0.177 Sum_probs=189.0
Q ss_pred ccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccccc-CccccCCCCCcEEEccC
Q 003203 385 NCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSL-PPSVHLLSNLQTLCLDQ 463 (839)
Q Consensus 385 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~ 463 (839)
.++.+.++++.+..+|..+ .++++.|++++|.. ..++...|.++++|++|++++|.+..+ |..++++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDI-SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcC-CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 4677888888888887655 36788888888764 556555668888888888888888866 66788888888888888
Q ss_pred CCcCCC-cccCCCCCCCEEEccCCCCCCCchh-hcCCCccCeEecCCCcCCCc--cCchhhcCccccCeEEccCCccccc
Q 003203 464 CVVGDI-SIIGNLKKLEILSLVDSDIERLPNE-IGQLTQLRCLDLSFCRNLKV--IPPNVISKLTQLEELYMGNTSVKWE 539 (839)
Q Consensus 464 ~~~~~~-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~--~p~~~l~~l~~L~~L~l~~~~~~~~ 539 (839)
|.+..+ ..+. ++|++|++++|.++.+|.. +.++++|++|++++|. ++. .++..++.+ +|++|++++|.+...
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 887774 3333 7888888888888877654 7788888888888876 432 333336666 888888888876521
Q ss_pred cccccccccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHH-
Q 003203 540 FEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDE- 618 (839)
Q Consensus 540 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~- 618 (839)
+ ..+ .++|+.|++++|.+...+... ...+++|+.|+++.+.......
T Consensus 188 -~-----------~~~--~~~L~~L~l~~n~i~~~~~~~------------------l~~l~~L~~L~L~~N~l~~~~~~ 235 (332)
T 2ft3_A 188 -P-----------KDL--PETLNELHLDHNKIQAIELED------------------LLRYSKLYRLGLGHNQIRMIENG 235 (332)
T ss_dssp -C-----------SSS--CSSCSCCBCCSSCCCCCCTTS------------------STTCTTCSCCBCCSSCCCCCCTT
T ss_pred -C-----------ccc--cCCCCEEECCCCcCCccCHHH------------------hcCCCCCCEEECCCCcCCcCChh
Confidence 1 111 257888888888777665322 1233445555555444333322
Q ss_pred HHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcc--cccccccchhhhhcccccccccc
Q 003203 619 ILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWV--CFDAFPLLESLVLHNLIHMEKIC 696 (839)
Q Consensus 619 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~--~~~~~p~L~~L~l~~~~~l~~~~ 696 (839)
.+..+++|+.|++.++. +..++.. ...+++|++|++++|. +..++...... ....+++|+.|++.+++- ..+.
T Consensus 236 ~~~~l~~L~~L~L~~N~-l~~lp~~--l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~-~~~~ 310 (332)
T 2ft3_A 236 SLSFLPTLRELHLDNNK-LSRVPAG--LPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPV-PYWE 310 (332)
T ss_dssp GGGGCTTCCEEECCSSC-CCBCCTT--GGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSS-CGGG
T ss_pred HhhCCCCCCEEECCCCc-CeecChh--hhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcc-cccc
Confidence 45567888888888764 3333332 3567899999999885 44443221111 112367889999988763 3222
Q ss_pred cccccccccCCCCEEEEecCC
Q 003203 697 HSQLTAVSFCNLKIIKVRNCD 717 (839)
Q Consensus 697 ~~~~~~~~~~~L~~L~i~~c~ 717 (839)
..+.....+++|+.|+++++.
T Consensus 311 ~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 311 VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCGGGGTTBCCSTTEEC----
T ss_pred cCcccccccchhhhhhccccc
Confidence 222334568889999998865
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=1.5e-18 Score=184.02 Aligned_cols=290 Identities=16% Similarity=0.164 Sum_probs=183.8
Q ss_pred ccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccccc-CccccCCCCCcEEEccC
Q 003203 385 NCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSL-PPSVHLLSNLQTLCLDQ 463 (839)
Q Consensus 385 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~ 463 (839)
+++.+.++++.+..+|..+. ++++.|++++|.. ..++...|.++++|++|++++|.+..+ |..++.+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC-CCCeEEECCCCcC-CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 46677777777777776543 6778888887763 556665667888888888888888766 67778888888888888
Q ss_pred CCcCCC-cccCCCCCCCEEEccCCCCCCCch-hhcCCCccCeEecCCCcCCCc--cCchhhcCccccCeEEccCCccccc
Q 003203 464 CVVGDI-SIIGNLKKLEILSLVDSDIERLPN-EIGQLTQLRCLDLSFCRNLKV--IPPNVISKLTQLEELYMGNTSVKWE 539 (839)
Q Consensus 464 ~~~~~~-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~--~p~~~l~~l~~L~~L~l~~~~~~~~ 539 (839)
|.+..+ ..+. ++|++|++++|.++.++. .+.++++|++|++++|. ++. .....++++++|++|++++|.+...
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccC
Confidence 877763 3332 678888888888776654 46778888888888776 332 3333377788888888888776521
Q ss_pred cccccccccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHH-
Q 003203 540 FEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDE- 618 (839)
Q Consensus 540 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~- 618 (839)
.. .+ .++|+.|++++|.+...+... ...+++|+.|+++.+.......
T Consensus 187 ~~------------~~--~~~L~~L~l~~n~l~~~~~~~------------------~~~l~~L~~L~Ls~n~l~~~~~~ 234 (330)
T 1xku_A 187 PQ------------GL--PPSLTELHLDGNKITKVDAAS------------------LKGLNNLAKLGLSFNSISAVDNG 234 (330)
T ss_dssp CS------------SC--CTTCSEEECTTSCCCEECTGG------------------GTTCTTCCEEECCSSCCCEECTT
T ss_pred Cc------------cc--cccCCEEECCCCcCCccCHHH------------------hcCCCCCCEEECCCCcCceeChh
Confidence 11 11 267888888877766543221 1233455555555544333222
Q ss_pred HHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcc--cccccccchhhhhcccccccccc
Q 003203 619 ILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWV--CFDAFPLLESLVLHNLIHMEKIC 696 (839)
Q Consensus 619 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~--~~~~~p~L~~L~l~~~~~l~~~~ 696 (839)
.+..+++|+.|++.++.- ..++.. ...+++|++|++++|. +..++...... ....+++|+.|++.+.+ +..+.
T Consensus 235 ~~~~l~~L~~L~L~~N~l-~~lp~~--l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~ 309 (330)
T 1xku_A 235 SLANTPHLRELHLNNNKL-VKVPGG--LADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWE 309 (330)
T ss_dssp TGGGSTTCCEEECCSSCC-SSCCTT--TTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGG
T ss_pred hccCCCCCCEEECCCCcC-ccCChh--hccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCc-ccccc
Confidence 445677888888887643 333332 3567899999999885 44443222111 11235788888888765 33322
Q ss_pred cccccccccCCCCEEEEecC
Q 003203 697 HSQLTAVSFCNLKIIKVRNC 716 (839)
Q Consensus 697 ~~~~~~~~~~~L~~L~i~~c 716 (839)
..+.....+++|+.++++++
T Consensus 310 i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 310 IQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCGGGGTTCCCGGGEEC---
T ss_pred cCccccccccceeEEEeccc
Confidence 22333456778888888765
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=2.3e-18 Score=195.68 Aligned_cols=255 Identities=18% Similarity=0.179 Sum_probs=181.8
Q ss_pred ccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCC
Q 003203 385 NCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQC 464 (839)
Q Consensus 385 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~ 464 (839)
+++.++++++.+..+|..+. ++|+.|++++|.. ..+|. .+++|++|+|++|.++.+|. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l-~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNL-TSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCC-SCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCC-CCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 47889999999999988665 8999999998874 56775 57899999999999998887 6789999999999
Q ss_pred CcCCCcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcccccccccc
Q 003203 465 VVGDISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLN 544 (839)
Q Consensus 465 ~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 544 (839)
.+..++. .+.+|++|++++|.++.+|.. +++|++|++++|. ++.+|. .+++|+.|++++|.+..
T Consensus 112 ~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~~------ 175 (622)
T 3g06_A 112 PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLTS------ 175 (622)
T ss_dssp CCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSC------
T ss_pred cCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCCC------
Confidence 8888655 678999999999999998874 4889999999985 777765 34688899999988751
Q ss_pred ccccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHHHHHHhc
Q 003203 545 IERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDEILMQLK 624 (839)
Q Consensus 545 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~ 624 (839)
+. ..+++|+.|++++|.+..+|.. ..+|+.|.+..+........ ++
T Consensus 176 -------l~--~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~~-----------------------~~ 221 (622)
T 3g06_A 176 -------LP--MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL-----------------------PS 221 (622)
T ss_dssp -------CC--CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCC-----------------------CT
T ss_pred -------Cc--ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccCCC-----------------------CC
Confidence 11 4468899999999988877753 24555555443332222222 35
Q ss_pred ccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhcccccccccccccccccc
Q 003203 625 GIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICHSQLTAVS 704 (839)
Q Consensus 625 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~ 704 (839)
+|+.|+++++. +..+. ..+++|+.|++++|. +..++. .+++|+.|++++| .++.++. ....
T Consensus 222 ~L~~L~Ls~N~-L~~lp-----~~l~~L~~L~Ls~N~-L~~lp~--------~~~~L~~L~Ls~N-~L~~lp~---~l~~ 282 (622)
T 3g06_A 222 GLKELIVSGNR-LTSLP-----VLPSELKELMVSGNR-LTSLPM--------LPSGLLSLSVYRN-QLTRLPE---SLIH 282 (622)
T ss_dssp TCCEEECCSSC-CSCCC-----CCCTTCCEEECCSSC-CSCCCC--------CCTTCCEEECCSS-CCCSCCG---GGGG
T ss_pred CCCEEEccCCc-cCcCC-----CCCCcCcEEECCCCC-CCcCCc--------ccccCcEEeCCCC-CCCcCCH---HHhh
Confidence 56666666542 22221 345777777777763 333331 4567777777775 4555532 2456
Q ss_pred cCCCCEEEEecCC
Q 003203 705 FCNLKIIKVRNCD 717 (839)
Q Consensus 705 ~~~L~~L~i~~c~ 717 (839)
+++|+.|++++|+
T Consensus 283 l~~L~~L~L~~N~ 295 (622)
T 3g06_A 283 LSSETTVNLEGNP 295 (622)
T ss_dssp SCTTCEEECCSCC
T ss_pred ccccCEEEecCCC
Confidence 7777777777765
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=5.4e-20 Score=212.43 Aligned_cols=328 Identities=13% Similarity=0.013 Sum_probs=173.1
Q ss_pred CCCCccEEEeCCCcccc-----cCccccCCCCCcEEEccCCCcCC------CcccCCCCCCCEEEccCCCCCCCchhhcC
Q 003203 429 GMSKLRGLALSEMQLLS-----LPPSVHLLSNLQTLCLDQCVVGD------ISIIGNLKKLEILSLVDSDIERLPNEIGQ 497 (839)
Q Consensus 429 ~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~l~~lp~~i~~ 497 (839)
++++|++|+|++|.+.. ++.....+++|++|++++|.+.. ...+.++++|++|++++|.+..+|..+.+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 44555555555554431 11222344455555555554431 12233445555555555555555555555
Q ss_pred CCccCeEecCCCcCC---CccCchhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCCEEEEEeccccCC
Q 003203 498 LTQLRCLDLSFCRNL---KVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMIL 574 (839)
Q Consensus 498 l~~L~~L~l~~~~~l---~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~ 574 (839)
+++|++|+++.+... ...+.. ++.+++|+.|+++++.. ......+..+++|++|++++|.+...
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~------------~~l~~~~~~~~~L~~L~Ls~~~l~~~ 308 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMN-LVFPRKLCRLGLSYMGP------------NEMPILFPFAAQIRKLDLLYALLETE 308 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSC-CCCCTTCCEEEETTCCT------------TTGGGGGGGGGGCCEEEETTCCCCHH
T ss_pred hhHHHhhcccccccccchHHHHHH-hhccccccccCccccch------------hHHHHHHhhcCCCcEEecCCCcCCHH
Confidence 555555555432111 111111 34445555555544321 12223455677888888887763221
Q ss_pred Cc-c--ccccccceEEEEEcCCC----CCCCCCCCccEEEecc----------cCCcchHH---HHHHhcccceEEeccc
Q 003203 575 PK-G--LFSKKLERYKIYIGDEW----DWSGKSDNTRALKLKL----------CSSIYLDE---ILMQLKGIEHLYLDEV 634 (839)
Q Consensus 575 ~~-~--~~~~~L~~l~l~~~~~~----~~~~~~~~l~~L~l~~----------~~~~~~~~---~~~~l~~L~~L~l~~~ 634 (839)
.. . ...++|+.|.+..+... .....+++|+.|++.. |....... ....+++|+.|++ .|
T Consensus 309 ~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~ 387 (592)
T 3ogk_B 309 DHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YV 387 (592)
T ss_dssp HHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EE
T ss_pred HHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ec
Confidence 11 1 12267788877622110 1123467788888885 65655433 3456788888888 44
Q ss_pred cCchhhccccccCCCCCCCeeeeccC---CCcceeecCC-Ccccccccccchhhhhccccc-ccccccccccccccCCCC
Q 003203 635 PGIKNVLYDLEREGFPQLKHLQVQNN---PFILCITDST-AWVCFDAFPLLESLVLHNLIH-MEKICHSQLTAVSFCNLK 709 (839)
Q Consensus 635 ~~~~~~~~~~~~~~l~~L~~L~l~~~---~~l~~i~~~~-~~~~~~~~p~L~~L~l~~~~~-l~~~~~~~~~~~~~~~L~ 709 (839)
..+.+.........+++|+.|++++| ..+...+... .......+++|+.|++++|.+ +....... ....+++|+
T Consensus 388 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~-~~~~~~~L~ 466 (592)
T 3ogk_B 388 SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY-IGQYSPNVR 466 (592)
T ss_dssp SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH-HHHSCTTCC
T ss_pred CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH-HHHhCccce
Confidence 55443322211123788888888753 3333211000 001244688899999987664 22211110 123478899
Q ss_pred EEEEecCCCcccccchhhhhcCCCccEEEEecccchHHHhhcccCCccccCCCccccccccceeecccccccccc
Q 003203 710 IIKVRNCDRLKNVFSFSIARGLPQLQTITVIKCKNVEEIFMMERDGYVDCKEVNKIEFSQLRSLTLKFLPRLRSF 784 (839)
Q Consensus 710 ~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l 784 (839)
+|++++|. ++.......+.++++|++|++++|+ ++.... +.....+++|++|+|++|. ++..
T Consensus 467 ~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~----------~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 467 WMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAI----------AAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp EEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHH----------HHHHHHCSSCCEEEEESCB-CCTT
T ss_pred EeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHH----------HHHHHhcCccCeeECcCCc-CCHH
Confidence 99999875 5543323356788999999999997 433211 1112358999999999997 5443
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=1.1e-18 Score=193.52 Aligned_cols=241 Identities=20% Similarity=0.239 Sum_probs=171.1
Q ss_pred cceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccC-ccccCCCCCcEEEccCC
Q 003203 386 CSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLP-PSVHLLSNLQTLCLDQC 464 (839)
Q Consensus 386 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~ 464 (839)
.+.+...+..+..+|..+. ++++.|++++|.. ..++...|.++++|++|+|++|.+..++ ..+.++++|++|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i-~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNI-QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC-TTCSEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC-CCccEEECcCCcC-ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 4566777777778886553 6889999988874 5566666789999999999999998664 67888999999999999
Q ss_pred CcCCC--cccCCCCCCCEEEccCCCCCCCch-hhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccc
Q 003203 465 VVGDI--SIIGNLKKLEILSLVDSDIERLPN-EIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFE 541 (839)
Q Consensus 465 ~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 541 (839)
.+..+ ..++++++|++|++++|.++.+|. .+.++++|++|++++|..++.++...+.++++|++|++++|.+..
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--- 210 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--- 210 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS---
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc---
Confidence 88873 458889999999999999988765 578899999999999888888888778899999999999988751
Q ss_pred cccccccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHH-HH
Q 003203 542 GLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDE-IL 620 (839)
Q Consensus 542 ~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~ 620 (839)
+..+..+++|+.|++++|.+..++...+ ..+++|+.|+++.+....... .+
T Consensus 211 ----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~------------------~~l~~L~~L~L~~n~l~~~~~~~~ 262 (452)
T 3zyi_A 211 ----------MPNLTPLVGLEELEMSGNHFPEIRPGSF------------------HGLSSLKKLWVMNSQVSLIERNAF 262 (452)
T ss_dssp ----------CCCCTTCTTCCEEECTTSCCSEECGGGG------------------TTCTTCCEEECTTSCCCEECTTTT
T ss_pred ----------cccccccccccEEECcCCcCcccCcccc------------------cCccCCCEEEeCCCcCceECHHHh
Confidence 1347788899999999888776654322 233444555554443322211 23
Q ss_pred HHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCC
Q 003203 621 MQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNP 661 (839)
Q Consensus 621 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 661 (839)
..+++|+.|++.++. +...... ....+++|+.|+|++|+
T Consensus 263 ~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 263 DGLASLVELNLAHNN-LSSLPHD-LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCTTCCEEECCSSC-CSCCCTT-SSTTCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCc-CCccChH-HhccccCCCEEEccCCC
Confidence 445556666665542 2222211 12345666666666654
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=193.08 Aligned_cols=241 Identities=20% Similarity=0.255 Sum_probs=168.6
Q ss_pred cceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccC-ccccCCCCCcEEEccCC
Q 003203 386 CSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLP-PSVHLLSNLQTLCLDQC 464 (839)
Q Consensus 386 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~ 464 (839)
.+.+...+..+..+|..+. ++++.|++++|.. ..++...|.++++|++|+|++|.+..++ ..+.++++|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i-~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQI-QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCC-CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcC-CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4566777777788887654 6788999988874 5666666788999999999999888765 57888999999999999
Q ss_pred CcCCC--cccCCCCCCCEEEccCCCCCCCch-hhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccc
Q 003203 465 VVGDI--SIIGNLKKLEILSLVDSDIERLPN-EIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFE 541 (839)
Q Consensus 465 ~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 541 (839)
.+..+ ..+.++++|++|++++|.++.+|. .+.++++|++|++++|..++.++...+.++++|++|++++|.+..
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--- 199 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--- 199 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS---
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc---
Confidence 88874 458889999999999998887765 578899999999998888888888778889999999999987751
Q ss_pred cccccccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHH-HH
Q 003203 542 GLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDE-IL 620 (839)
Q Consensus 542 ~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~ 620 (839)
+..+..+++|+.|++++|.+..++...+ ..+++|+.|++..+....... .+
T Consensus 200 ----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~------------------~~l~~L~~L~L~~n~l~~~~~~~~ 251 (440)
T 3zyj_A 200 ----------IPNLTPLIKLDELDLSGNHLSAIRPGSF------------------QGLMHLQKLWMIQSQIQVIERNAF 251 (440)
T ss_dssp ----------CCCCTTCSSCCEEECTTSCCCEECTTTT------------------TTCTTCCEEECTTCCCCEECTTSS
T ss_pred ----------ccccCCCcccCEEECCCCccCccChhhh------------------ccCccCCEEECCCCceeEEChhhh
Confidence 2247788889999998887776543321 233444445444433322211 23
Q ss_pred HHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCC
Q 003203 621 MQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNP 661 (839)
Q Consensus 621 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 661 (839)
..+++|+.|+|.++. +..+... ....+++|+.|+|++|+
T Consensus 252 ~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 252 DNLQSLVEINLAHNN-LTLLPHD-LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCTTCCEEECTTSC-CCCCCTT-TTSSCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCC-CCccChh-HhccccCCCEEEcCCCC
Confidence 344555555555532 2222111 12345566666666554
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=7.1e-19 Score=184.49 Aligned_cols=174 Identities=22% Similarity=0.213 Sum_probs=105.8
Q ss_pred eEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccccc---CccccCCCCCcEEEccCC
Q 003203 388 AVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSL---PPSVHLLSNLQTLCLDQC 464 (839)
Q Consensus 388 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l---p~~~~~l~~L~~L~l~~~ 464 (839)
.+...++.+..+|..+. ++|+.|++++|.. ..+|..+|.++++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l-~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP-SSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSCCC-TTCCEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCCCC-CCCCEEECCCCcc-CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 45555566666665432 5667777766653 456666666677777777777766533 455556667777777777
Q ss_pred CcCC-CcccCCCCCCCEEEccCCCCCCCch--hhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccc
Q 003203 465 VVGD-ISIIGNLKKLEILSLVDSDIERLPN--EIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFE 541 (839)
Q Consensus 465 ~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 541 (839)
.+.. +..+.++++|++|++++|.++.++. .+..+++|++|++++|. +...++..++.+++|++|++++|.+...
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 165 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQEN-- 165 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGG--
T ss_pred ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccc--
Confidence 6665 3446666777777777776666553 56666777777777665 4444433466667777777766665310
Q ss_pred cccccccccchhhhccCCCCCEEEEEeccccCC
Q 003203 542 GLNIERSNASLQELRHLSQLTTLEIQIQDAMIL 574 (839)
Q Consensus 542 ~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~ 574 (839)
.....+..+++|+.|++++|.+..+
T Consensus 166 --------~~~~~~~~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 166 --------FLPDIFTELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp --------EECSCCTTCTTCCEEECTTSCCCEE
T ss_pred --------cchhHHhhCcCCCEEECCCCCcCCc
Confidence 1123455666677777666665544
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=1.4e-18 Score=180.06 Aligned_cols=146 Identities=18% Similarity=0.240 Sum_probs=71.3
Q ss_pred eEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccccc-CccccCCCCCcEEEccCCC-
Q 003203 388 AVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSL-PPSVHLLSNLQTLCLDQCV- 465 (839)
Q Consensus 388 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~- 465 (839)
.++..++.+..+|..+ .++|+.|+++++.. ..++...|.++++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 15 ~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI-PAASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp EEECCSSCCSSCCTTC-CTTCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEEcCcCCcccCCcCC-CCCceEEEeeCCcC-CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 3444444444444332 24455555555442 334434445555555555555555544 4445555555555555553
Q ss_pred cCC--CcccCCCCCCCEEEccCCCCCCC-chhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcc
Q 003203 466 VGD--ISIIGNLKKLEILSLVDSDIERL-PNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSV 536 (839)
Q Consensus 466 ~~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~ 536 (839)
+.. +..+.++++|++|++++|.++.+ |..+.++++|++|++++|. ++.++...++.+++|++|++++|.+
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcc
Confidence 443 23445555555555555555544 3334555555555555543 4444443345555555555555544
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=1.1e-18 Score=180.98 Aligned_cols=182 Identities=26% Similarity=0.423 Sum_probs=125.5
Q ss_pred ccccccceEEecCCCCCCCCCC-C-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCc-cccc-CccccCCCCC
Q 003203 381 DILKNCSAVFLNDIKTGVLPEG-L-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQ-LLSL-PPSVHLLSNL 456 (839)
Q Consensus 381 ~~~~~~~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l-p~~~~~l~~L 456 (839)
..+.+++++.++++.+..++.. + .+++|++|++++|.. ..++...|.++++|++|++++|. +..+ |..+..+++|
T Consensus 29 ~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L 107 (285)
T 1ozn_A 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL 107 (285)
T ss_dssp TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcc-ceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence 3456777788887777766642 2 677788888877753 44544456777788888888776 6666 5667777788
Q ss_pred cEEEccCCCcCCC--cccCCCCCCCEEEccCCCCCCCchh-hcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccC
Q 003203 457 QTLCLDQCVVGDI--SIIGNLKKLEILSLVDSDIERLPNE-IGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGN 533 (839)
Q Consensus 457 ~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~ 533 (839)
++|++++|.+... ..+.++++|++|++++|.++.+|.. ++.+++|++|++++|. ++.++...++.+++|++|++++
T Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCC
Confidence 8888888777663 4577777888888888777776654 6777788888887765 6666665577777788888777
Q ss_pred CccccccccccccccccchhhhccCCCCCEEEEEeccccCCC
Q 003203 534 TSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILP 575 (839)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~ 575 (839)
|.+.... ...+..+++|+.|++++|.+..++
T Consensus 187 n~l~~~~-----------~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 187 NRVAHVH-----------PHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp SCCCEEC-----------TTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcccccC-----------HhHccCcccccEeeCCCCcCCcCC
Confidence 7764221 244566677777777766655444
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=3.1e-18 Score=183.43 Aligned_cols=277 Identities=21% Similarity=0.196 Sum_probs=188.5
Q ss_pred CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCc-cccCCCCCcEEEccCCCcCCC--cccCCCCCCCE
Q 003203 404 EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPP-SVHLLSNLQTLCLDQCVVGDI--SIIGNLKKLEI 480 (839)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~ 480 (839)
.|+.....+.+++. ...+|..+ .++|++|++++|.++.+|. .+.++++|++|++++|.+..+ ..++++++|++
T Consensus 29 ~C~~~~~c~~~~~~-l~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGS-LNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTT-CSSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCC-cccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 45555566666555 57788755 3589999999999998876 789999999999999998873 56999999999
Q ss_pred EEccCCCCCCCchh-hcCCCccCeEecCCCcCCCccCc-hhhcCccccCeEEccCCccccccccccccccccchhhhccC
Q 003203 481 LSLVDSDIERLPNE-IGQLTQLRCLDLSFCRNLKVIPP-NVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHL 558 (839)
Q Consensus 481 L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l 558 (839)
|++++|.++.+|.. ++++++|++|++++|. ++.+|. ..++++++|++|++++|..... .....+..+
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~----------~~~~~~~~l 173 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTK----------IQRKDFAGL 173 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCE----------ECTTTTTTC
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccc----------cCHHHccCC
Confidence 99999999999877 8899999999999986 778887 4588999999999999852211 112457888
Q ss_pred CCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHH-HHHHhcccceEEeccccCc
Q 003203 559 SQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDE-ILMQLKGIEHLYLDEVPGI 637 (839)
Q Consensus 559 ~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~ 637 (839)
++|+.|++++|.+...... ....+++|+.|+++.+.....+. ....+++|+.|++.++.-.
T Consensus 174 ~~L~~L~l~~n~l~~~~~~------------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 174 TFLEELEIDASDLQSYEPK------------------SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp CEEEEEEEEETTCCEECTT------------------TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred CCCCEEECCCCCcCccCHH------------------HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence 9999999999887665322 12344566666666665544443 3445677777777664322
Q ss_pred hhhccccc-cCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhcccccccccccccccccccCCCCEEEEecC
Q 003203 638 KNVLYDLE-REGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICHSQLTAVSFCNLKIIKVRNC 716 (839)
Q Consensus 638 ~~~~~~~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~c 716 (839)
......+. ....+.++.+++.++ .+.+. .+..++ .....+++|++|++++|
T Consensus 236 ~~~~~~l~~~~~~~~l~~l~L~~~------------------------~l~~~-~l~~l~---~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 236 TFHFSELSTGETNSLIKKFTFRNV------------------------KITDE-SLFQVM---KLLNQISGLLELEFSRN 287 (353)
T ss_dssp TCCCC------CCCCCCEEEEESC------------------------BCCHH-HHHHHH---HHHHTCTTCCEEECCSS
T ss_pred cccccccccccccchhhccccccc------------------------cccCc-chhhhH---HHHhcccCCCEEECCCC
Confidence 21111000 012233444444433 12111 111221 11346788888888886
Q ss_pred CCcccccchhhhhcCCCccEEEEeccc
Q 003203 717 DRLKNVFSFSIARGLPQLQTITVIKCK 743 (839)
Q Consensus 717 ~~L~~l~~~~~~~~l~~L~~L~l~~c~ 743 (839)
+++.++. ..+..+++|++|++++++
T Consensus 288 -~l~~i~~-~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 288 -QLKSVPD-GIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp -CCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred -CCCccCH-HHHhcCCCCCEEEeeCCC
Confidence 5677765 234678889999888764
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=4.8e-18 Score=193.01 Aligned_cols=257 Identities=16% Similarity=0.116 Sum_probs=195.5
Q ss_pred CccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCCCcCCCcccCCCCCCCEEEccCC
Q 003203 407 QLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGDISIIGNLKKLEILSLVDS 486 (839)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~ 486 (839)
+++.|+++++.. ..+|..++ ++|++|++++|.++.+|. .+++|++|++++|.+..++. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L-~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGL-TTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCC-SCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSC
T ss_pred CCcEEEecCCCc-CccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCC
Confidence 578999988874 58887653 799999999999999987 57899999999999988655 7899999999999
Q ss_pred CCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCCEEEE
Q 003203 487 DIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEI 566 (839)
Q Consensus 487 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l 566 (839)
.++.+|. .+++|++|++++|. ++.+|.. +++|++|++++|.+... + ..+++|+.|++
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~----l~~L~~L~Ls~N~l~~l-~--------------~~~~~L~~L~L 168 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLASL-P--------------ALPSELCKLWA 168 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCSCC-C--------------CCCTTCCEEEC
T ss_pred cCCCCCC---CCCCcCEEECCCCC-CCcCCCC----CCCCCEEECcCCcCCCc-C--------------CccCCCCEEEC
Confidence 9999988 67899999999986 7888863 48999999999987521 1 13568999999
Q ss_pred EeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHHHHHHhcccceEEeccccCchhhcccccc
Q 003203 567 QIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDEILMQLKGIEHLYLDEVPGIKNVLYDLER 646 (839)
Q Consensus 567 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 646 (839)
++|.+..+|. ...+|+.|+ ++.+.....+ ..+++|+.|++.++. +..+.
T Consensus 169 ~~N~l~~l~~--~~~~L~~L~--------------------Ls~N~l~~l~---~~~~~L~~L~L~~N~-l~~l~----- 217 (622)
T 3g06_A 169 YNNQLTSLPM--LPSGLQELS--------------------VSDNQLASLP---TLPSELYKLWAYNNR-LTSLP----- 217 (622)
T ss_dssp CSSCCSCCCC--CCTTCCEEE--------------------CCSSCCSCCC---CCCTTCCEEECCSSC-CSSCC-----
T ss_pred CCCCCCCCcc--cCCCCcEEE--------------------CCCCCCCCCC---CccchhhEEECcCCc-ccccC-----
Confidence 9999888772 224455544 4443322211 124677888887653 22222
Q ss_pred CCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhcccccccccccccccccccCCCCEEEEecCCCcccccchh
Q 003203 647 EGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICHSQLTAVSFCNLKIIKVRNCDRLKNVFSFS 726 (839)
Q Consensus 647 ~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~ 726 (839)
..+++|+.|++++|. +..++ ..+++|+.|+++++ .++.++. .+++|+.|++++| +++.+|.
T Consensus 218 ~~~~~L~~L~Ls~N~-L~~lp--------~~l~~L~~L~Ls~N-~L~~lp~------~~~~L~~L~Ls~N-~L~~lp~-- 278 (622)
T 3g06_A 218 ALPSGLKELIVSGNR-LTSLP--------VLPSELKELMVSGN-RLTSLPM------LPSGLLSLSVYRN-QLTRLPE-- 278 (622)
T ss_dssp CCCTTCCEEECCSSC-CSCCC--------CCCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSS-CCCSCCG--
T ss_pred CCCCCCCEEEccCCc-cCcCC--------CCCCcCcEEECCCC-CCCcCCc------ccccCcEEeCCCC-CCCcCCH--
Confidence 235899999999984 44333 46789999999986 5666642 5689999999997 5778865
Q ss_pred hhhcCCCccEEEEecccch
Q 003203 727 IARGLPQLQTITVIKCKNV 745 (839)
Q Consensus 727 ~~~~l~~L~~L~l~~c~~L 745 (839)
.+.++++|+.|++++++--
T Consensus 279 ~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 279 SLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp GGGGSCTTCEEECCSCCCC
T ss_pred HHhhccccCEEEecCCCCC
Confidence 3689999999999998643
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=7.1e-21 Score=212.57 Aligned_cols=346 Identities=17% Similarity=0.111 Sum_probs=187.0
Q ss_pred cccceEEecCCCCCCCCCC--C-CCCCccEEeecCCCCCCC---CChhhhcCCCCccEEEeCCCccccc-Cccc-cCCC-
Q 003203 384 KNCSAVFLNDIKTGVLPEG--L-EYPQLDFFCMNSKDPFFK---MPENFFTGMSKLRGLALSEMQLLSL-PPSV-HLLS- 454 (839)
Q Consensus 384 ~~~~~l~l~~~~~~~l~~~--~-~~~~L~~L~l~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~-~~l~- 454 (839)
..++.++++++.+...+.. + .+++|++|++++|..... .-...+..+++|++|++++|.+... +..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4577888888776433311 1 577888888888874221 1123456778888888888887632 2222 2344
Q ss_pred ---CCcEEEccCCCcCC------CcccCCCCCCCEEEccCCCCCCC-chhh-----cCCCccCeEecCCCcCCCccC---
Q 003203 455 ---NLQTLCLDQCVVGD------ISIIGNLKKLEILSLVDSDIERL-PNEI-----GQLTQLRCLDLSFCRNLKVIP--- 516 (839)
Q Consensus 455 ---~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~l~~l-p~~i-----~~l~~L~~L~l~~~~~l~~~p--- 516 (839)
+|++|++++|.+.. +..+.++++|++|++++|.++.. +..+ ...++|++|++++|. ++...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~ 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEP 161 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHH
Confidence 68888888888774 46677888888888888877632 2222 235678888888875 44322
Q ss_pred -chhhcCccccCeEEccCCccccccccccccccccchhhhc-cCCCCCEEEEEeccccCC-----Cccc-cccccceEEE
Q 003203 517 -PNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELR-HLSQLTTLEIQIQDAMIL-----PKGL-FSKKLERYKI 588 (839)
Q Consensus 517 -~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~-~l~~L~~L~l~~~~~~~~-----~~~~-~~~~L~~l~l 588 (839)
...+..+++|++|++++|.+..... ......+. ..++|+.|++++|.+... +..+ ..++|+.|++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~-------~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 234 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGV-------RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHH-------HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHH-------HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEec
Confidence 1225667888888888887641110 01111221 356888888888876653 2221 1256666666
Q ss_pred EEcCCC---------CCCCCCCCccEEEecccCCcc-----hHHHHHHhcccceEEeccccCchhhccccc---cCCCCC
Q 003203 589 YIGDEW---------DWSGKSDNTRALKLKLCSSIY-----LDEILMQLKGIEHLYLDEVPGIKNVLYDLE---REGFPQ 651 (839)
Q Consensus 589 ~~~~~~---------~~~~~~~~l~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~~l~~ 651 (839)
..+... .+....++|+.|+++.|.... ....+..+++|+.|+++++.-.......+. ....++
T Consensus 235 s~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314 (461)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCC
T ss_pred cCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcc
Confidence 554311 112235666666666664333 122444566666666666532211111110 112356
Q ss_pred CCeeeeccCCCcceeecCCCcccccccccchhhhhccccccccccccccc---ccccCCCCEEEEecCCCccc-----cc
Q 003203 652 LKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICHSQLT---AVSFCNLKIIKVRNCDRLKN-----VF 723 (839)
Q Consensus 652 L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~---~~~~~~L~~L~i~~c~~L~~-----l~ 723 (839)
|++|++++|..... ........+..+++|++|+++++ .+.......+. ....++|++|++++|. ++. ++
T Consensus 315 L~~L~L~~n~l~~~-~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~ 391 (461)
T 1z7x_W 315 LESLWVKSCSFTAA-CCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLA 391 (461)
T ss_dssp CCEEECTTSCCBGG-GHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHH
T ss_pred ceeeEcCCCCCchH-HHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHH
Confidence 66677666642110 00000012234466666666665 23322110000 0014566666666653 432 22
Q ss_pred chhhhhcCCCccEEEEecc
Q 003203 724 SFSIARGLPQLQTITVIKC 742 (839)
Q Consensus 724 ~~~~~~~l~~L~~L~l~~c 742 (839)
..+..+++|++|++++|
T Consensus 392 --~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 392 --ATLLANHSLRELDLSNN 408 (461)
T ss_dssp --HHHHHCCCCCEEECCSS
T ss_pred --HHHHhCCCccEEECCCC
Confidence 12345666666666665
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=7.8e-20 Score=211.27 Aligned_cols=360 Identities=15% Similarity=0.117 Sum_probs=187.5
Q ss_pred CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCC-cccc--cCccccCCCCCcEEEccCCCcCC--Cc----ccCC
Q 003203 404 EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEM-QLLS--LPPSVHLLSNLQTLCLDQCVVGD--IS----IIGN 474 (839)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~--lp~~~~~l~~L~~L~l~~~~~~~--~~----~~~~ 474 (839)
.+++|+.|++++|......+..+...+++|++|++++| .+.. ++..+.++++|++|++++|.+.. +. ....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 45667777777665322222333234667777777766 4442 44444466777777777765443 11 1225
Q ss_pred CCCCCEEEccCCC--CC--CCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccc-------------
Q 003203 475 LKKLEILSLVDSD--IE--RLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVK------------- 537 (839)
Q Consensus 475 l~~L~~L~l~~~~--l~--~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~------------- 537 (839)
+++|++|++++|. +. .++.-+.++++|++|++++|..++.++.. +.++++|++|+++.+...
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 5667777777664 21 12222344567777777766545554433 556666666665444210
Q ss_pred ------cccccccccccccchhhhccCCCCCEEEEEeccccCCC--ccc-cccccceEEEEEcCCC----CCCCCCCCcc
Q 003203 538 ------WEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILP--KGL-FSKKLERYKIYIGDEW----DWSGKSDNTR 604 (839)
Q Consensus 538 ------~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~--~~~-~~~~L~~l~l~~~~~~----~~~~~~~~l~ 604 (839)
....+............+..+++|++|++++|.+.... ..+ ..++|+.|.+..+..- .+...+++|+
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLR 341 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCC
Confidence 00000000000111122234566666666665532110 000 1256666666644110 1112356677
Q ss_pred EEEecc--------cCCcchHH---HHHHhcccceEEeccccCchhhccccccCCCCCCCeeeec-----cCCCcceeec
Q 003203 605 ALKLKL--------CSSIYLDE---ILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQ-----NNPFILCITD 668 (839)
Q Consensus 605 ~L~l~~--------~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~-----~~~~l~~i~~ 668 (839)
.|++.. +....... ....+++|+.|.+ +|..+.+.........+++|+.|+++ +|..+...+.
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~ 420 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL 420 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT
T ss_pred EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch
Confidence 777732 33333322 3345778888844 44544433222112346888888888 4555442221
Q ss_pred CCC-cccccccccchhhhhcccccccccccccccccccCCCCEEEEecCCCcccccchhhhhcCCCccEEEEecccchHH
Q 003203 669 STA-WVCFDAFPLLESLVLHNLIHMEKICHSQLTAVSFCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKCKNVEE 747 (839)
Q Consensus 669 ~~~-~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~ 747 (839)
... ......+++|+.|++++ .++....... ...+++|+.|++++|. ++..........+++|++|++++|+. ++
T Consensus 421 ~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l-~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~ 495 (594)
T 2p1m_B 421 DIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYI-GTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GD 495 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCS--SCCHHHHHHH-HHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CH
T ss_pred hhHHHHHHhhCCCccEEeecC--cccHHHHHHH-HHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cH
Confidence 000 00245678888888865 3333211110 1237899999999886 54443333346789999999999975 33
Q ss_pred HhhcccCCccccCCCccccccccceeecccccc
Q 003203 748 IFMMERDGYVDCKEVNKIEFSQLRSLTLKFLPR 780 (839)
Q Consensus 748 l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 780 (839)
.... .....+++|+.|++++|+.
T Consensus 496 ~~~~----------~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 496 KALL----------ANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHH----------HTGGGGGGSSEEEEESSCC
T ss_pred HHHH----------HHHHhCCCCCEEeeeCCCC
Confidence 2211 1123479999999999975
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=7.4e-19 Score=184.95 Aligned_cols=245 Identities=13% Similarity=0.101 Sum_probs=150.4
Q ss_pred CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCCCcCCCcccCCCCCCCEEEc
Q 003203 404 EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGDISIIGNLKKLEILSL 483 (839)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l 483 (839)
.+++|+.|++++|.. ..++...+.++++|++|++++|.+...++ +..+++|++|++++|.+..++ .+++|++|++
T Consensus 32 ~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~---~~~~L~~L~l 106 (317)
T 3o53_A 32 SAWNVKELDLSGNPL-SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHA 106 (317)
T ss_dssp TGGGCSEEECTTSCC-CCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE---ECTTCCEEEC
T ss_pred cCCCCCEEECcCCcc-CcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc---CCCCcCEEEC
Confidence 345677777776653 44555555777777777777777765554 667777777777777665532 2367777777
Q ss_pred cCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccccccccchhhh-ccCCCCC
Q 003203 484 VDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQEL-RHLSQLT 562 (839)
Q Consensus 484 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l-~~l~~L~ 562 (839)
++|.++.++.. .+++|++|++++|. ++.+++..++.+++|++|++++|.+....+ ..+ ..+++|+
T Consensus 107 ~~n~l~~~~~~--~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------~~~~~~l~~L~ 172 (317)
T 3o53_A 107 ANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-----------AELAASSDTLE 172 (317)
T ss_dssp CSSCCSEEEEC--CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEEG-----------GGGGGGTTTCC
T ss_pred CCCccCCcCcc--ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcccH-----------HHHhhccCcCC
Confidence 77777665542 35667777777765 555554446667777777777776542211 222 3566777
Q ss_pred EEEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHHHHHHhcccceEEeccccCchhhcc
Q 003203 563 TLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDEILMQLKGIEHLYLDEVPGIKNVLY 642 (839)
Q Consensus 563 ~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 642 (839)
.|++++|.+..++...+ +++|+.|+++.+.....++.+..+++|+.|+++++. +..+..
T Consensus 173 ~L~L~~N~l~~~~~~~~--------------------l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~ 231 (317)
T 3o53_A 173 HLNLQYNFIYDVKGQVV--------------------FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEK 231 (317)
T ss_dssp EEECTTSCCCEEECCCC--------------------CTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECT
T ss_pred EEECCCCcCcccccccc--------------------cccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhh
Confidence 77777766655443222 334444444444433333334567888888888764 333333
Q ss_pred ccccCCCCCCCeeeeccCCCc-ceeecCCCcccccccccchhhhhccccccccc
Q 003203 643 DLEREGFPQLKHLQVQNNPFI-LCITDSTAWVCFDAFPLLESLVLHNLIHMEKI 695 (839)
Q Consensus 643 ~~~~~~l~~L~~L~l~~~~~l-~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~ 695 (839)
. ...+++|+.|++++|+.. ..++ .....+++|+.|++.++..++..
T Consensus 232 ~--~~~l~~L~~L~l~~N~~~~~~~~-----~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 232 A--LRFSQNLEHFDLRGNGFHCGTLR-----DFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp T--CCCCTTCCEEECTTCCCBHHHHH-----HHHHTCHHHHHHHHHHHHHHHSS
T ss_pred H--hhcCCCCCEEEccCCCccCcCHH-----HHHhccccceEEECCCchhccCC
Confidence 2 356789999999998754 2222 14567888899988877766643
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=1.6e-17 Score=184.33 Aligned_cols=153 Identities=20% Similarity=0.267 Sum_probs=123.3
Q ss_pred ccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccccc-CccccCCCCCcEEEccCCCcCC--CcccCCCCCCCEEEcc
Q 003203 408 LDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSL-PPSVHLLSNLQTLCLDQCVVGD--ISIIGNLKKLEILSLV 484 (839)
Q Consensus 408 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~ 484 (839)
.+.+...+.. ...+|..+ .++|++|+|++|.+..+ |..+.++++|++|++++|.+.. +..+.++++|++|+|+
T Consensus 56 ~~~v~c~~~~-l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRG-LSEVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSC-CSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCC-cCccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3455554443 46777654 36899999999999976 6688999999999999998887 3678999999999999
Q ss_pred CCCCCCCchh-hcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCCE
Q 003203 485 DSDIERLPNE-IGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTT 563 (839)
Q Consensus 485 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~ 563 (839)
+|.++.+|.. +..+++|++|++++|. ++.+|...+.++++|++|++++|.....++ ...+..+++|+.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~----------~~~~~~l~~L~~ 200 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYIS----------EGAFEGLFNLKY 200 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEEC----------TTTTTTCTTCCE
T ss_pred CCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccC----------hhhccCCCCCCE
Confidence 9999988765 7889999999999987 788888778999999999999865432222 235778889999
Q ss_pred EEEEeccccCCC
Q 003203 564 LEIQIQDAMILP 575 (839)
Q Consensus 564 L~l~~~~~~~~~ 575 (839)
|++++|.+..+|
T Consensus 201 L~L~~n~l~~~~ 212 (452)
T 3zyi_A 201 LNLGMCNIKDMP 212 (452)
T ss_dssp EECTTSCCSSCC
T ss_pred EECCCCcccccc
Confidence 999988877665
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=4.3e-20 Score=206.20 Aligned_cols=347 Identities=17% Similarity=0.148 Sum_probs=230.1
Q ss_pred ccccceEEecCCCCC-----CCCCCC-CCCCccEEeecCCCCCCCCChhhhcCCC----CccEEEeCCCccc-----ccC
Q 003203 383 LKNCSAVFLNDIKTG-----VLPEGL-EYPQLDFFCMNSKDPFFKMPENFFTGMS----KLRGLALSEMQLL-----SLP 447 (839)
Q Consensus 383 ~~~~~~l~l~~~~~~-----~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~----~L~~L~l~~~~~~-----~lp 447 (839)
.++++.+++++|.+. .++..+ .+++|++|++++|......+..++..++ +|++|++++|.+. .+|
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 567899999999875 344443 6799999999998753333444555666 7999999999987 468
Q ss_pred ccccCCCCCcEEEccCCCcCC--Ccc-----cCCCCCCCEEEccCCCCCC-----CchhhcCCCccCeEecCCCcCCCcc
Q 003203 448 PSVHLLSNLQTLCLDQCVVGD--ISI-----IGNLKKLEILSLVDSDIER-----LPNEIGQLTQLRCLDLSFCRNLKVI 515 (839)
Q Consensus 448 ~~~~~l~~L~~L~l~~~~~~~--~~~-----~~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~~ 515 (839)
..+..+++|++|++++|.+.. +.. ....++|++|++++|.++. ++..+..+++|++|++++|. ++..
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~ 185 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEA 185 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchH
Confidence 888999999999999998765 222 2346789999999998874 46667888999999999987 5543
Q ss_pred Cchhhc-----CccccCeEEccCCccccccccccccccccchhhhccCCCCCEEEEEeccccCCC-----cccc--cccc
Q 003203 516 PPNVIS-----KLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILP-----KGLF--SKKL 583 (839)
Q Consensus 516 p~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~-----~~~~--~~~L 583 (839)
....+. .+++|++|++++|.+... ........+..+++|+.|++++|.+.... .... ..+|
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-------~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L 258 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSD-------NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTT-------HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHH-------HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCc
Confidence 322232 366999999999987521 01123456778899999999998765421 2221 3688
Q ss_pred ceEEEEEcCCCC--------CCCCCCCccEEEecccCCcchHH-HHHH-----hcccceEEeccccCchhhcccc--ccC
Q 003203 584 ERYKIYIGDEWD--------WSGKSDNTRALKLKLCSSIYLDE-ILMQ-----LKGIEHLYLDEVPGIKNVLYDL--ERE 647 (839)
Q Consensus 584 ~~l~l~~~~~~~--------~~~~~~~l~~L~l~~~~~~~~~~-~~~~-----l~~L~~L~l~~~~~~~~~~~~~--~~~ 647 (839)
+.|++..+.... ....+++|+.|+++.+....... .+.. .++|+.|++.+|.-.......+ ...
T Consensus 259 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 338 (461)
T 1z7x_W 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 338 (461)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred eEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh
Confidence 888887664222 12347899999999875432211 1221 2699999999987443211111 124
Q ss_pred CCCCCCeeeeccCCCcceeecCCCcccc-cccccchhhhhccccccc-----ccccccccccccCCCCEEEEecCCCccc
Q 003203 648 GFPQLKHLQVQNNPFILCITDSTAWVCF-DAFPLLESLVLHNLIHME-----KICHSQLTAVSFCNLKIIKVRNCDRLKN 721 (839)
Q Consensus 648 ~l~~L~~L~l~~~~~l~~i~~~~~~~~~-~~~p~L~~L~l~~~~~l~-----~~~~~~~~~~~~~~L~~L~i~~c~~L~~ 721 (839)
.+++|++|++++|. +............ ...++|+.|++++|. ++ .++ .....+++|++|++++|+ ++.
T Consensus 339 ~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~---~~l~~~~~L~~L~l~~N~-i~~ 412 (461)
T 1z7x_W 339 QNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLA---ATLLANHSLRELDLSNNC-LGD 412 (461)
T ss_dssp HCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHH---HHHHHCCCCCEEECCSSS-CCH
T ss_pred hCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHH---HHHHhCCCccEEECCCCC-CCH
Confidence 56999999999984 3211000000011 126799999999984 44 221 123468999999999974 554
Q ss_pred ccchhhhh----cCCCccEEEEeccc
Q 003203 722 VFSFSIAR----GLPQLQTITVIKCK 743 (839)
Q Consensus 722 l~~~~~~~----~l~~L~~L~l~~c~ 743 (839)
.....+.. ..++|+.|.+.++.
T Consensus 413 ~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 413 AGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred HHHHHHHHHhccCCcchhheeecccc
Confidence 32222222 23457777776654
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=5.3e-19 Score=186.09 Aligned_cols=134 Identities=13% Similarity=0.174 Sum_probs=101.5
Q ss_pred CCChhhhcCCCCccEEEeCCCcccccC-ccccCCCCCcEEEccCCCcCCCcccCCCCCCCEEEccCCCCCCCchhhcCCC
Q 003203 421 KMPENFFTGMSKLRGLALSEMQLLSLP-PSVHLLSNLQTLCLDQCVVGDISIIGNLKKLEILSLVDSDIERLPNEIGQLT 499 (839)
Q Consensus 421 ~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~ 499 (839)
..+..++..+++|++|++++|.+..++ ..+..+++|++|++++|.+.....+..+++|++|++++|.++.+|. .+
T Consensus 24 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~----~~ 99 (317)
T 3o53_A 24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GP 99 (317)
T ss_dssp HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE----CT
T ss_pred hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC----CC
Confidence 344556677888999999999998775 5788999999999999988775558889999999999998887663 47
Q ss_pred ccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCCEEEEEeccccC
Q 003203 500 QLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMI 573 (839)
Q Consensus 500 ~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~ 573 (839)
+|++|++++|. ++.++.. .+++|++|++++|.+....+ ..+..+++|+.|++++|.+..
T Consensus 100 ~L~~L~l~~n~-l~~~~~~---~~~~L~~L~l~~N~l~~~~~-----------~~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 100 SIETLHAANNN-ISRVSCS---RGQGKKNIYLANNKITMLRD-----------LDEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp TCCEEECCSSC-CSEEEEC---CCSSCEEEECCSSCCCSGGG-----------BCTGGGSSEEEEECTTSCCCE
T ss_pred CcCEEECCCCc-cCCcCcc---ccCCCCEEECCCCCCCCccc-----------hhhhccCCCCEEECCCCCCCc
Confidence 89999998876 6666643 46788888888887752211 235566777777777766554
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=1.1e-17 Score=175.42 Aligned_cols=241 Identities=20% Similarity=0.199 Sum_probs=168.8
Q ss_pred cEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCcc-ccCCCCCcEEEccCCCcCCC----cccCCCCCCCEEEc
Q 003203 409 DFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPS-VHLLSNLQTLCLDQCVVGDI----SIIGNLKKLEILSL 483 (839)
Q Consensus 409 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~----~~~~~l~~L~~L~l 483 (839)
+.+..+++. ...+|..+ .++|++|++++|.+..+|.. +.++++|++|++++|.+... ..+..+++|++|++
T Consensus 10 ~~l~c~~~~-l~~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKG-LTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSC-CSSCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCC-cccCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 455555554 46777644 46899999999999988875 68999999999999988752 55667899999999
Q ss_pred cCCCCCCCchhhcCCCccCeEecCCCcCCCccCc-hhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCC
Q 003203 484 VDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPP-NVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLT 562 (839)
Q Consensus 484 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~ 562 (839)
++|.+..+|..+..+++|++|++++|. ++.++. ..+..+++|++|++++|.+.... ...+..+++|+
T Consensus 86 s~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------~~~~~~l~~L~ 153 (306)
T 2z66_A 86 SFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAF-----------NGIFNGLSSLE 153 (306)
T ss_dssp CSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECS-----------TTTTTTCTTCC
T ss_pred CCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccc-----------hhhcccCcCCC
Confidence 999999999889999999999999986 666654 44889999999999999875322 24577889999
Q ss_pred EEEEEeccccC--CCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHHHHHHhcccceEEeccccCchhh
Q 003203 563 TLEIQIQDAMI--LPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDEILMQLKGIEHLYLDEVPGIKNV 640 (839)
Q Consensus 563 ~L~l~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 640 (839)
.|++++|.+.. .|.. . ..+++|+.|+++++.-. ..
T Consensus 154 ~L~l~~n~l~~~~~~~~-------------------~-----------------------~~l~~L~~L~Ls~n~l~-~~ 190 (306)
T 2z66_A 154 VLKMAGNSFQENFLPDI-------------------F-----------------------TELRNLTFLDLSQCQLE-QL 190 (306)
T ss_dssp EEECTTCEEGGGEECSC-------------------C-----------------------TTCTTCCEEECTTSCCC-EE
T ss_pred EEECCCCccccccchhH-------------------H-----------------------hhCcCCCEEECCCCCcC-Cc
Confidence 99999887653 2321 1 22345556666554322 22
Q ss_pred ccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhccccccccccccccccccc-CCCCEEEEecCC
Q 003203 641 LYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICHSQLTAVSF-CNLKIIKVRNCD 717 (839)
Q Consensus 641 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~-~~L~~L~i~~c~ 717 (839)
... ....+++|++|++++|.. ..++ ...+..+++|+.|+++++. +..... .....+ ++|++|++++++
T Consensus 191 ~~~-~~~~l~~L~~L~L~~N~l-~~~~----~~~~~~l~~L~~L~L~~N~-l~~~~~--~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 191 SPT-AFNSLSSLQVLNMSHNNF-FSLD----TFPYKCLNSLQVLDYSLNH-IMTSKK--QELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CTT-TTTTCTTCCEEECTTSCC-SBCC----SGGGTTCTTCCEEECTTSC-CCBCSS--SSCCCCCTTCCEEECTTCC
T ss_pred CHH-HhcCCCCCCEEECCCCcc-CccC----hhhccCcccCCEeECCCCC-CcccCH--HHHHhhhccCCEEEccCCC
Confidence 111 124578888888888753 2221 1134567888888888764 333221 123445 489999998865
No 70
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=3.1e-17 Score=181.21 Aligned_cols=221 Identities=19% Similarity=0.313 Sum_probs=174.7
Q ss_pred ccccccceEEecCCCCCCCCCC-C-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCc-cccCCCCCc
Q 003203 381 DILKNCSAVFLNDIKTGVLPEG-L-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPP-SVHLLSNLQ 457 (839)
Q Consensus 381 ~~~~~~~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~ 457 (839)
.+..+++.+.+++|.+..++.. + ++++|+.|++++|.. ..++...|.++++|++|+|++|.++.+|. .+..+++|+
T Consensus 61 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i-~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 139 (440)
T 3zyj_A 61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK 139 (440)
T ss_dssp CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCC-CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCC
T ss_pred CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcC-CccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCc
Confidence 4567899999999999877643 3 899999999999974 66777778999999999999999998876 689999999
Q ss_pred EEEccCCCcCCC--cccCCCCCCCEEEccCC-CCCCCch-hhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccC
Q 003203 458 TLCLDQCVVGDI--SIIGNLKKLEILSLVDS-DIERLPN-EIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGN 533 (839)
Q Consensus 458 ~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~-~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~ 533 (839)
+|++++|.+..+ ..+.++++|++|++++| .+..++. .+.++++|++|++++|. ++.+|. +..+++|++|++++
T Consensus 140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LTPLIKLDELDLSG 216 (440)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--CTTCSSCCEEECTT
T ss_pred eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--cCCCcccCEEECCC
Confidence 999999998884 46899999999999996 6777765 58899999999999986 888886 89999999999999
Q ss_pred CccccccccccccccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCC
Q 003203 534 TSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSS 613 (839)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~ 613 (839)
|.+.... ...+..+++|+.|++++|.+..++...+ ..+++|+.|+++.+..
T Consensus 217 N~l~~~~-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~------------------~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 217 NHLSAIR-----------PGSFQGLMHLQKLWMIQSQIQVIERNAF------------------DNLQSLVEINLAHNNL 267 (440)
T ss_dssp SCCCEEC-----------TTTTTTCTTCCEEECTTCCCCEECTTSS------------------TTCTTCCEEECTTSCC
T ss_pred CccCccC-----------hhhhccCccCCEEECCCCceeEEChhhh------------------cCCCCCCEEECCCCCC
Confidence 9876332 2567889999999999998877664432 2344555555555443
Q ss_pred cchHH-HHHHhcccceEEeccc
Q 003203 614 IYLDE-ILMQLKGIEHLYLDEV 634 (839)
Q Consensus 614 ~~~~~-~~~~l~~L~~L~l~~~ 634 (839)
...+. .+..+++|+.|++.++
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSS
T ss_pred CccChhHhccccCCCEEEcCCC
Confidence 33322 3344566667766654
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=6.2e-17 Score=167.38 Aligned_cols=183 Identities=22% Similarity=0.282 Sum_probs=157.3
Q ss_pred ccccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEcc
Q 003203 383 LKNCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLD 462 (839)
Q Consensus 383 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 462 (839)
..+++.+.+.++.+..+|..+. ++++.|++++|.. ..++...|.++++|++|++++|.++.++.. +.+++|++|+++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLL-YTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCC-SEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred cCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcC-CccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence 4568899999999999997764 7899999999985 566666789999999999999999988765 889999999999
Q ss_pred CCCcCC-CcccCCCCCCCEEEccCCCCCCCc-hhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcccccc
Q 003203 463 QCVVGD-ISIIGNLKKLEILSLVDSDIERLP-NEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEF 540 (839)
Q Consensus 463 ~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 540 (839)
+|.+.. +..+..+++|++|++++|+++.+| ..+..+++|++|++++|. ++.+|...+..+++|+.|++++|.+....
T Consensus 86 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (290)
T ss_dssp SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCccC
Confidence 999988 466889999999999999999887 468999999999999986 88888887899999999999999876322
Q ss_pred ccccccccccchhhhccCCCCCEEEEEeccccCCCccccc
Q 003203 541 EGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFS 580 (839)
Q Consensus 541 ~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 580 (839)
+ ..+..+++|+.|++++|.+..+|..++.
T Consensus 165 ~-----------~~~~~l~~L~~L~L~~N~l~~ip~~~~~ 193 (290)
T 1p9a_G 165 A-----------GLLNGLENLDTLLLQENSLYTIPKGFFG 193 (290)
T ss_dssp T-----------TTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred H-----------HHhcCcCCCCEEECCCCcCCccChhhcc
Confidence 2 3467899999999999999998876543
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=1.1e-16 Score=164.01 Aligned_cols=181 Identities=27% Similarity=0.405 Sum_probs=148.2
Q ss_pred cccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccc-cCCCCCcEEEcc
Q 003203 384 KNCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSV-HLLSNLQTLCLD 462 (839)
Q Consensus 384 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~-~~l~~L~~L~l~ 462 (839)
...+.+.++++.+..+|..+. ++++.|++++|.. ..++...|.++++|++|++++|.+..+|..+ ..+++|++|+++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCC-SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCC-CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 346788889888888887654 6799999988874 6677767789999999999999999887654 789999999999
Q ss_pred CCCcCCC--cccCCCCCCCEEEccCCCCCCCch-hhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccc
Q 003203 463 QCVVGDI--SIIGNLKKLEILSLVDSDIERLPN-EIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWE 539 (839)
Q Consensus 463 ~~~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~ 539 (839)
+|.+..+ ..+.++++|++|++++|.++.+|. .+..+++|++|++++|. ++.+|...++.+++|++|++++|.+...
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEe
Confidence 9988873 467889999999999999987765 46889999999999986 7888877688999999999999887532
Q ss_pred cccccccccccchhhhccCCCCCEEEEEeccccCCCccc
Q 003203 540 FEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGL 578 (839)
Q Consensus 540 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~ 578 (839)
.+ ..+..+++|+.|++++|.+..++...
T Consensus 173 ~~-----------~~~~~l~~L~~L~L~~N~l~~~~~~~ 200 (270)
T 2o6q_A 173 PE-----------GAFDKLTELKTLKLDNNQLKRVPEGA 200 (270)
T ss_dssp CT-----------TTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred Ch-----------hHhccCCCcCEEECCCCcCCcCCHHH
Confidence 22 34677899999999999888877643
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=1.8e-16 Score=163.23 Aligned_cols=177 Identities=20% Similarity=0.320 Sum_probs=132.1
Q ss_pred EEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCc-cccCCCCCcEEEccCCCcC
Q 003203 389 VFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPP-SVHLLSNLQTLCLDQCVVG 467 (839)
Q Consensus 389 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~ 467 (839)
+...+..+..+|..+. ++|++|++++|.. ..++...|.++++|++|++++|.+..++. .+..+++|++|++++|.+.
T Consensus 12 ~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP-FSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EECTTSCCSSCCSSSC-TTCCEEECTTCCC-CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEecCCCccccCCCCC-CCccEEECCCCcc-cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 4445555666776543 5788999988864 55666567889999999999998887754 6888999999999999887
Q ss_pred C--CcccCCCCCCCEEEccCCCCCCCch-hhcCCCccCeEecCCCcCCCc--cCchhhcCccccCeEEccCCcccccccc
Q 003203 468 D--ISIIGNLKKLEILSLVDSDIERLPN-EIGQLTQLRCLDLSFCRNLKV--IPPNVISKLTQLEELYMGNTSVKWEFEG 542 (839)
Q Consensus 468 ~--~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~--~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 542 (839)
. +..+.++++|++|++++|.+..++. .++++++|++|++++|. ++. +|.. ++++++|++|++++|.+....+
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~- 166 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC- 166 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEECG-
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCCcCCH-
Confidence 7 3568889999999999998887765 58888999999999876 555 4554 8889999999999988753221
Q ss_pred ccccccccchhhhccCCCCC-EEEEEeccccCCCcc
Q 003203 543 LNIERSNASLQELRHLSQLT-TLEIQIQDAMILPKG 577 (839)
Q Consensus 543 ~~~~~~~~~l~~l~~l~~L~-~L~l~~~~~~~~~~~ 577 (839)
..+..+..++.|. .|++++|.+..++..
T Consensus 167 -------~~~~~l~~L~~l~l~L~ls~n~l~~~~~~ 195 (276)
T 2z62_A 167 -------TDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195 (276)
T ss_dssp -------GGGHHHHTCTTCCEEEECCSSCCCEECTT
T ss_pred -------HHhhhhhhccccceeeecCCCcccccCcc
Confidence 2334455555555 788888877765543
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=1.2e-16 Score=167.12 Aligned_cols=188 Identities=15% Similarity=0.200 Sum_probs=152.7
Q ss_pred ccccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEcc
Q 003203 383 LKNCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLD 462 (839)
Q Consensus 383 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 462 (839)
+.+++.+++.++.+..+|....+++|+.|++++|.. ..++. +.++++|++|++++|.+..++ .+..+++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i-~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI-TDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC-CCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcC-CCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence 567889999999988888666889999999998864 55665 688999999999999988876 68889999999999
Q ss_pred CCCcCCCcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcccccccc
Q 003203 463 QCVVGDISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEG 542 (839)
Q Consensus 463 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 542 (839)
+|.+..++.+..+++|++|++++|.++.++. +..+++|++|++++|. ++.++. ++.+++|++|++++|.+..
T Consensus 116 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~---- 187 (308)
T 1h6u_A 116 STQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKISD---- 187 (308)
T ss_dssp TSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCC----
T ss_pred CCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccCc----
Confidence 9998887778999999999999999988876 8889999999999986 777776 7889999999999988751
Q ss_pred ccccccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEc
Q 003203 543 LNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIG 591 (839)
Q Consensus 543 ~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~ 591 (839)
+..+..+++|+.|++++|.+..++.....++|+.+++..+
T Consensus 188 ---------~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 188 ---------ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQ 227 (308)
T ss_dssp ---------CGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEE
T ss_pred ---------ChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCC
Confidence 1227788999999999998887774333355555555443
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=1.1e-17 Score=186.55 Aligned_cols=238 Identities=14% Similarity=0.103 Sum_probs=133.4
Q ss_pred CCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCCCcCCCcccCCCCCCCEEEccC
Q 003203 406 PQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGDISIIGNLKKLEILSLVD 485 (839)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~ 485 (839)
++|+.|++++|.. ..++...|.++++|++|+|++|.+...++ ++.+++|++|++++|.+..++. .++|++|++++
T Consensus 34 ~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~---~~~L~~L~L~~ 108 (487)
T 3oja_A 34 WNVKELDLSGNPL-SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV---GPSIETLHAAN 108 (487)
T ss_dssp GGCCEEECCSSCC-CCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE---CTTCCEEECCS
T ss_pred CCccEEEeeCCcC-CCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC---CCCcCEEECcC
Confidence 3566666666553 33444445666666666666666654443 6666666666666665554321 25666666666
Q ss_pred CCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccccccccchhhhc-cCCCCCEE
Q 003203 486 SDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELR-HLSQLTTL 564 (839)
Q Consensus 486 ~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~-~l~~L~~L 564 (839)
|.++.+|.. .+++|++|++++|. ++.+++..++++++|++|++++|.+....+ ..+. .+++|+.|
T Consensus 109 N~l~~~~~~--~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------~~l~~~l~~L~~L 174 (487)
T 3oja_A 109 NNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-----------AELAASSDTLEHL 174 (487)
T ss_dssp SCCCCEEEC--CCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEG-----------GGGGGGTTTCCEE
T ss_pred CcCCCCCcc--ccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcCh-----------HHHhhhCCcccEE
Confidence 666655442 35566666666655 444433335666666666666665542211 2232 45666666
Q ss_pred EEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchHHHHHHhcccceEEeccccCchhhcccc
Q 003203 565 EIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDEILMQLKGIEHLYLDEVPGIKNVLYDL 644 (839)
Q Consensus 565 ~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 644 (839)
++++|.+..++.... +++|+.|+++.+.....++.+..+++|+.|+++++.- ..++..
T Consensus 175 ~Ls~N~l~~~~~~~~--------------------l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~- 232 (487)
T 3oja_A 175 NLQYNFIYDVKGQVV--------------------FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL-VLIEKA- 232 (487)
T ss_dssp ECTTSCCCEEECCCC--------------------CTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCC-CEECTT-
T ss_pred ecCCCcccccccccc--------------------CCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcC-cccchh-
Confidence 666665554432221 2334444444443333333345677888888887543 333332
Q ss_pred ccCCCCCCCeeeeccCCCc-ceeecCCCcccccccccchhhhhcccc
Q 003203 645 EREGFPQLKHLQVQNNPFI-LCITDSTAWVCFDAFPLLESLVLHNLI 690 (839)
Q Consensus 645 ~~~~l~~L~~L~l~~~~~l-~~i~~~~~~~~~~~~p~L~~L~l~~~~ 690 (839)
...+++|+.|++++|+.. ..++ .....+++|+.|.+..+.
T Consensus 233 -l~~l~~L~~L~l~~N~l~c~~~~-----~~~~~l~~L~~l~~~~~~ 273 (487)
T 3oja_A 233 -LRFSQNLEHFDLRGNGFHCGTLR-----DFFSKNQRVQTVAKQTVK 273 (487)
T ss_dssp -CCCCTTCCEEECTTCCBCHHHHH-----HHHTTCHHHHHHHHHHHH
T ss_pred -hccCCCCCEEEcCCCCCcCcchH-----HHHHhCCCCcEEeccccc
Confidence 356789999999998754 1221 135567888888876443
No 76
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=3.1e-18 Score=197.65 Aligned_cols=140 Identities=16% Similarity=0.080 Sum_probs=87.0
Q ss_pred CCCCccEEEecccCCcchHH---HHHHhcccceEEecc---ccCchhh-----ccccccCCCCCCCeeeeccCCCcceee
Q 003203 599 KSDNTRALKLKLCSSIYLDE---ILMQLKGIEHLYLDE---VPGIKNV-----LYDLEREGFPQLKHLQVQNNPFILCIT 667 (839)
Q Consensus 599 ~~~~l~~L~l~~~~~~~~~~---~~~~l~~L~~L~l~~---~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~l~~i~ 667 (839)
.+++|+.|.+ .|..+.... ....+++|+.|++.+ |..+++. .... ...+++|++|+++.|... +.
T Consensus 376 ~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~-~~~~~~L~~L~L~~~~~~--l~ 451 (592)
T 3ogk_B 376 GCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL-LIGCKKLRRFAFYLRQGG--LT 451 (592)
T ss_dssp HCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH-HHHCTTCCEEEEECCGGG--CC
T ss_pred hCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH-HHhCCCCCEEEEecCCCC--cc
Confidence 3577888888 344444332 334488999999974 3444432 1111 245799999999876531 11
Q ss_pred cCCCcccccccccchhhhhcccccccccccccccccccCCCCEEEEecCCCcccccchhhhhcCCCccEEEEecccchH
Q 003203 668 DSTAWVCFDAFPLLESLVLHNLIHMEKICHSQLTAVSFCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKCKNVE 746 (839)
Q Consensus 668 ~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~ 746 (839)
+.........+|+|+.|++++|. ++.... +.....+++|++|++++|+ ++......+...+++|++|++++|. ++
T Consensus 452 ~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it 526 (592)
T 3ogk_B 452 DLGLSYIGQYSPNVRWMLLGYVG-ESDEGL-MEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-AS 526 (592)
T ss_dssp HHHHHHHHHSCTTCCEEEECSCC-SSHHHH-HHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CC
T ss_pred HHHHHHHHHhCccceEeeccCCC-CCHHHH-HHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CC
Confidence 11111122357899999998775 432110 1113467999999999998 6554333455789999999999997 44
No 77
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.70 E-value=2.8e-18 Score=198.24 Aligned_cols=325 Identities=14% Similarity=0.086 Sum_probs=176.9
Q ss_pred hhcCCCCccEEEeCCCccc-ccCcccc-CCCCCcEEEccCC-CcCC--Cc-ccCCCCCCCEEEccCCCCCC-----Cchh
Q 003203 426 FFTGMSKLRGLALSEMQLL-SLPPSVH-LLSNLQTLCLDQC-VVGD--IS-IIGNLKKLEILSLVDSDIER-----LPNE 494 (839)
Q Consensus 426 ~~~~l~~L~~L~l~~~~~~-~lp~~~~-~l~~L~~L~l~~~-~~~~--~~-~~~~l~~L~~L~l~~~~l~~-----lp~~ 494 (839)
++..+++|++|++++|.++ ..+..+. .+++|++|++++| .+.. ++ ...++++|++|++++|.++. ++..
T Consensus 100 l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 100 MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred HHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 3457899999999999877 3344454 6899999999999 5544 33 34479999999999998663 3333
Q ss_pred hcCCCccCeEecCCCcCCCccCch----hhcCccccCeEEccCCccccccccccccccccchhhhccCCCCCEEEEEecc
Q 003203 495 IGQLTQLRCLDLSFCRNLKVIPPN----VISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQD 570 (839)
Q Consensus 495 i~~l~~L~~L~l~~~~~l~~~p~~----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 570 (839)
...+++|++|++++|. ..+... .+.++++|++|++++|.... .....+..+++|+.|++..+.
T Consensus 180 ~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-----------~l~~~~~~~~~L~~L~l~~~~ 246 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLE-----------KLATLLQRAPQLEELGTGGYT 246 (594)
T ss_dssp CTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHH-----------HHHHHHHHCTTCSEEECSBCC
T ss_pred hhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHH-----------HHHHHHhcCCcceEccccccc
Confidence 4477899999999986 233322 23457999999999984221 122345566666666644331
Q ss_pred c-------------------------------cCCCccc-cccccceEEEEEcCCC-----CCCCCCCCccEEEecccCC
Q 003203 571 A-------------------------------MILPKGL-FSKKLERYKIYIGDEW-----DWSGKSDNTRALKLKLCSS 613 (839)
Q Consensus 571 ~-------------------------------~~~~~~~-~~~~L~~l~l~~~~~~-----~~~~~~~~l~~L~l~~~~~ 613 (839)
. ..++... ..++|+.|++..+... .....+++|+.|++..|..
T Consensus 247 ~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~ 326 (594)
T 2p1m_B 247 AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIE 326 (594)
T ss_dssp CCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGH
T ss_pred CccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccC
Confidence 1 1111111 1245555555444311 0123455566666655511
Q ss_pred cch-HHHHHHhcccceEEecc--------ccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhh
Q 003203 614 IYL-DEILMQLKGIEHLYLDE--------VPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESL 684 (839)
Q Consensus 614 ~~~-~~~~~~l~~L~~L~l~~--------~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L 684 (839)
... ......+++|+.|++.+ +..+.+.........+++|++|.+..+ .+... ........+|+|+.|
T Consensus 327 ~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~-~l~~~---~~~~l~~~~~~L~~L 402 (594)
T 2p1m_B 327 DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR-QMTNA---ALITIARNRPNMTRF 402 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES-CCCHH---HHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC-CcCHH---HHHHHHhhCCCccee
Confidence 110 11223455666666532 222222111100122456666644332 22110 000011246677777
Q ss_pred hhc-----ccccccccccc-c--ccccccCCCCEEEEecCCCcccccchhhhhcCCCccEEEEecccchHHHhhcccCCc
Q 003203 685 VLH-----NLIHMEKICHS-Q--LTAVSFCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIKCKNVEEIFMMERDGY 756 (839)
Q Consensus 685 ~l~-----~~~~l~~~~~~-~--~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~ 756 (839)
++. +|..++..+.. . .....+++|++|++++ .+++.........+++|+.|++++|. ++.....
T Consensus 403 ~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~----- 474 (594)
T 2p1m_B 403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMH----- 474 (594)
T ss_dssp EEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHH-----
T ss_pred EeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHH-----
Confidence 776 45555532110 0 0023566777777754 44443322223347788888888775 3221110
Q ss_pred cccCCCccccccccceeecccccc
Q 003203 757 VDCKEVNKIEFSQLRSLTLKFLPR 780 (839)
Q Consensus 757 ~~~~~~~~~~l~~L~~L~l~~c~~ 780 (839)
.....+++|++|+|++|+.
T Consensus 475 -----~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 475 -----HVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp -----HHHHHCTTCCEEEEESCSC
T ss_pred -----HHHhcCCCcCEEECcCCCC
Confidence 0013489999999999975
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=4.5e-16 Score=159.56 Aligned_cols=179 Identities=27% Similarity=0.385 Sum_probs=154.6
Q ss_pred ccccccceEEecCCCCCCCCCC-C-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCc-cccCCCCCc
Q 003203 381 DILKNCSAVFLNDIKTGVLPEG-L-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPP-SVHLLSNLQ 457 (839)
Q Consensus 381 ~~~~~~~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~ 457 (839)
.+..+++.+.++++.+..++.. + .+++|++|++++|.. ..++..+|.++++|++|++++|.+..+|. .+..+++|+
T Consensus 34 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 112 (270)
T 2o6q_A 34 NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLA 112 (270)
T ss_dssp CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCC
T ss_pred CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCC
Confidence 3456899999999999888863 3 899999999999874 68888888999999999999999998875 568899999
Q ss_pred EEEccCCCcCCC--cccCCCCCCCEEEccCCCCCCCchh-hcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCC
Q 003203 458 TLCLDQCVVGDI--SIIGNLKKLEILSLVDSDIERLPNE-IGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNT 534 (839)
Q Consensus 458 ~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~ 534 (839)
+|++++|.+..+ ..++++++|++|++++|.++.+|.. +..+++|++|++++|. ++.+++..+.++++|++|++++|
T Consensus 113 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCC
Confidence 999999999884 5589999999999999999998875 7899999999999986 78888776899999999999999
Q ss_pred ccccccccccccccccchhhhccCCCCCEEEEEecccc
Q 003203 535 SVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAM 572 (839)
Q Consensus 535 ~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 572 (839)
.+....+ ..+..+++|+.|++++|...
T Consensus 192 ~l~~~~~-----------~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 192 QLKRVPE-----------GAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCSCCCT-----------TTTTTCTTCCEEECCSSCBC
T ss_pred cCCcCCH-----------HHhccccCCCEEEecCCCee
Confidence 8763221 34678899999999988754
No 79
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.69 E-value=1.1e-15 Score=163.57 Aligned_cols=297 Identities=16% Similarity=0.105 Sum_probs=176.0
Q ss_pred cccCCCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC------CH
Q 003203 27 WLRSNQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA------NV 100 (839)
Q Consensus 27 ~~~~~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~------~~ 100 (839)
.+.++..+..|+||++++++|.+++..+ +++.|+|++|+|||||+++++++. . .+|+++.... +.
T Consensus 4 ~~~~~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 4 DLRPKTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp CCSCCCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCH
T ss_pred CCCCCCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCH
Confidence 4456667788999999999999998754 799999999999999999998764 1 6777765442 55
Q ss_pred HHHHHHHHHHhhhh---------------cc----CCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc---------ccc
Q 003203 101 KRIQDEIADQLCLE---------------LC----KGTESERARTLFDRLWKENKILVILDDICTSID---------LVT 152 (839)
Q Consensus 101 ~~~~~~i~~~l~~~---------------~~----~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~---------~~~ 152 (839)
..+.+.+.+.+... .. .....+....+.+.....++++||+||++.... +..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 66666666654320 00 011222222232222222489999999986432 121
Q ss_pred ccccCCCCCCCceEEEEeCchhhhhhh---------c--CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 003203 153 VGIPFGNAHRGCKILLASRYRDILVSE---------M--HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVA 221 (839)
Q Consensus 153 l~~~l~~~~~~s~iivTtr~~~~~~~~---------~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~ 221 (839)
+.... ...++.++|+|++........ . .....+++.+|+.+|+.+++.+.++...... ..+.+.+|+
T Consensus 155 L~~~~-~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~-~~~~~~~i~ 232 (350)
T 2qen_A 155 FAYAY-DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV-PENEIEEAV 232 (350)
T ss_dssp HHHHH-HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHH
T ss_pred HHHHH-HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Confidence 21111 112478899998876431100 1 1134799999999999999988763221111 134678999
Q ss_pred HHhCCchhHHHHHHHHhcC-CChhHHH-HHHHHhhcccccchHHHHhhhhccccccchhHHHHHHHhcccCCCCCCCcHH
Q 003203 222 NECGGLPLAIVIVARALRN-KPLSEWK-GALLKLRSSAGKLDALVYSSIELSYNYLIDQVLKSAFLLCGLLKHPYDASVM 299 (839)
Q Consensus 222 ~~~~G~Plai~~~~~~L~~-~~~~~w~-~~l~~l~~~~~~~~~~~~~~l~~sy~~L~~~~lk~~fl~~a~fp~~~~~~~~ 299 (839)
+.++|+|+++..++..+.. .+...+. .+.+.... .....+.. +.+ + ++. .+..+..+|. . .....
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~---l~~-~-~~~-~~~~l~~la~-g---~~~~~ 299 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKG---LIMGELEE---LRR-R-SPR-YVDILRAIAL-G---YNRWS 299 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH---HHHHHHHH---HHH-H-CHH-HHHHHHHHHT-T---CCSHH
T ss_pred HHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHH---HHHHHHHH---HHh-C-Chh-HHHHHHHHHh-C---CCCHH
Confidence 9999999999999876432 2222211 11111100 01111111 111 2 555 4888888887 2 23444
Q ss_pred HHHHhhhc-cccccccccHHHHHHHHHHHHHHHHhcccccCCCCCCeEEe-eehHHHHHH
Q 003203 300 DLLKHGMG-LGLFEGIYTMQERRDRVYALVHILKDSCLLLDGRTEDWFSM-HDIVRNVAI 357 (839)
Q Consensus 300 ~li~~w~~-~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~m-H~lv~~~~~ 357 (839)
.+...... .| +. ....+..+++.|.+.+++... .+.|++ |++++++.+
T Consensus 300 ~l~~~~~~~~~---~~-----~~~~~~~~l~~L~~~gli~~~--~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 300 LIRDYLAVKGT---KI-----PEPRLYALLENLKKMNWIVEE--DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHTTC---CC-----CHHHHHHHHHHHHHTTSEEEE--TTEEEESSHHHHHHHT
T ss_pred HHHHHHHHHhC---CC-----CHHHHHHHHHHHHhCCCEEec--CCEEEEecHHHHHHHc
Confidence 44433211 11 00 123355678899999999764 245665 778887754
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=1.2e-16 Score=160.72 Aligned_cols=183 Identities=13% Similarity=0.197 Sum_probs=151.1
Q ss_pred cccccceEEecCCCCCCCCCC-C-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCC-CcccccC-ccccCCCCCc
Q 003203 382 ILKNCSAVFLNDIKTGVLPEG-L-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSE-MQLLSLP-PSVHLLSNLQ 457 (839)
Q Consensus 382 ~~~~~~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp-~~~~~l~~L~ 457 (839)
+..+++.+.++++.+..+|.. + .+++|++|++++|..+..++...|.++++|++|++++ |.++.+| ..+..+++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 566899999999999888873 3 7899999999998756778887789999999999998 8898876 4678899999
Q ss_pred EEEccCCCcCCCcccCCCCCCC---EEEccCC-CCCCCchh-hcCCCccC-eEecCCCcCCCccCchhhcCccccCeEEc
Q 003203 458 TLCLDQCVVGDISIIGNLKKLE---ILSLVDS-DIERLPNE-IGQLTQLR-CLDLSFCRNLKVIPPNVISKLTQLEELYM 531 (839)
Q Consensus 458 ~L~l~~~~~~~~~~~~~l~~L~---~L~l~~~-~l~~lp~~-i~~l~~L~-~L~l~~~~~l~~~p~~~l~~l~~L~~L~l 531 (839)
+|++++|.+..++.++.+.+|+ +|++++| .++.+|.. +..+++|+ +|++++|. ++.+|...+.. ++|++|++
T Consensus 109 ~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTT-CEEEEEEC
T ss_pred EEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCC-CCCCEEEc
Confidence 9999999988876688888888 9999999 89888764 78899999 99999876 77888775555 89999999
Q ss_pred cCCc-cccccccccccccccchhhhccC-CCCCEEEEEeccccCCCcc
Q 003203 532 GNTS-VKWEFEGLNIERSNASLQELRHL-SQLTTLEIQIQDAMILPKG 577 (839)
Q Consensus 532 ~~~~-~~~~~~~~~~~~~~~~l~~l~~l-~~L~~L~l~~~~~~~~~~~ 577 (839)
++|. +.... ...+..+ ++|+.|++++|.+..+|..
T Consensus 187 ~~n~~l~~i~-----------~~~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 187 NKNKYLTVID-----------KDAFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp TTCTTCCEEC-----------TTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred CCCCCcccCC-----------HHHhhccccCCcEEECCCCccccCChh
Confidence 9985 64221 1446777 8999999999988887754
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=3.5e-16 Score=160.54 Aligned_cols=171 Identities=25% Similarity=0.327 Sum_probs=96.2
Q ss_pred EEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCCCcCC
Q 003203 389 VFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGD 468 (839)
Q Consensus 389 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 468 (839)
+.+..+.+..+.....+++|+.|.+.++.. ..++. +..+++|++|++++|.+..++ .++.+++|++|++++|.+..
T Consensus 24 l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i-~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~ 99 (272)
T 3rfs_A 24 ANLKKKSVTDAVTQNELNSIDQIIANNSDI-KSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQS 99 (272)
T ss_dssp HHHTCSCTTSEECHHHHTTCCEEECTTSCC-CCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCC
T ss_pred HHhcCcccccccccccccceeeeeeCCCCc-ccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCc
Confidence 333333333333333556666666666553 33332 455666666666666666543 56666666666666666665
Q ss_pred C--cccCCCCCCCEEEccCCCCCCCchh-hcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccc
Q 003203 469 I--SIIGNLKKLEILSLVDSDIERLPNE-IGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNI 545 (839)
Q Consensus 469 ~--~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 545 (839)
+ ..++++++|++|++++|.++.+|.. ++.+++|++|++++|. ++.+++..++++++|++|++++|.+....+
T Consensus 100 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---- 174 (272)
T 3rfs_A 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPE---- 174 (272)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT----
T ss_pred cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCH----
Confidence 3 2356666666666666666655543 4666666666666664 555555545666666666666665531111
Q ss_pred cccccchhhhccCCCCCEEEEEeccccCCC
Q 003203 546 ERSNASLQELRHLSQLTTLEIQIQDAMILP 575 (839)
Q Consensus 546 ~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~ 575 (839)
..+..+++|+.|++++|.+..++
T Consensus 175 -------~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 175 -------GVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp -------TTTTTCTTCCEEECCSSCCSCCC
T ss_pred -------HHhcCCccCCEEECCCCcCCccC
Confidence 22455556666666555544433
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=8.7e-16 Score=155.53 Aligned_cols=177 Identities=23% Similarity=0.309 Sum_probs=150.4
Q ss_pred cccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCc-cccCCCCCcEEEcc
Q 003203 384 KNCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPP-SVHLLSNLQTLCLD 462 (839)
Q Consensus 384 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~ 462 (839)
...+.++++++.+..+|..+. ++++.|++++|.. ..++...|.++++|++|++++|.+..++. .+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCc-CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 356789999999999998765 6899999999885 55666667999999999999999997754 57899999999999
Q ss_pred CCCcCCC--cccCCCCCCCEEEccCCCCCCCchh-hcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccc
Q 003203 463 QCVVGDI--SIIGNLKKLEILSLVDSDIERLPNE-IGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWE 539 (839)
Q Consensus 463 ~~~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~ 539 (839)
+|.+..+ ..+..+++|++|++++|.++.+|.. +..+++|++|++++|. ++.+|+..++.+++|++|++++|.+...
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 9999883 5678999999999999999988876 5889999999999986 8888886689999999999999987632
Q ss_pred cccccccccccchhhhccCCCCCEEEEEeccccCC
Q 003203 540 FEGLNIERSNASLQELRHLSQLTTLEIQIQDAMIL 574 (839)
Q Consensus 540 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~ 574 (839)
.+ ..+..+++|+.|++++|.....
T Consensus 171 ~~-----------~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PH-----------GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CT-----------TTTTTCTTCCEEECCSCCBCTT
T ss_pred CH-----------HHHhCCCCCCEEEeeCCceeCC
Confidence 22 4577889999999999887644
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=3.4e-16 Score=161.75 Aligned_cols=159 Identities=25% Similarity=0.328 Sum_probs=136.5
Q ss_pred CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccccc-CccccCCCCCcEEEccCCCcCCCcccCCCCCCCEEE
Q 003203 404 EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSL-PPSVHLLSNLQTLCLDQCVVGDISIIGNLKKLEILS 482 (839)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~ 482 (839)
++++++.+++.++. +..+|..+ .+++++|++++|.+..+ |..+..+++|++|++++|.+..++..+.+++|++|+
T Consensus 8 ~l~~l~~l~~~~~~-l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRN-LTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSC-CSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred ccCCccEEECCCCC-CCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence 56789999998876 46788765 36899999999999976 567899999999999999998876668999999999
Q ss_pred ccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCC
Q 003203 483 LVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLT 562 (839)
Q Consensus 483 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~ 562 (839)
+++|.++.+|..+..+++|++|++++|. ++.+|+..++++++|++|++++|.+....+ ..+..+++|+
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L~ 151 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPP-----------GLLTPTPKLE 151 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCT-----------TTTTTCTTCC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccCh-----------hhcccccCCC
Confidence 9999999999999999999999999986 888887779999999999999998763222 3467889999
Q ss_pred EEEEEeccccCCCccc
Q 003203 563 TLEIQIQDAMILPKGL 578 (839)
Q Consensus 563 ~L~l~~~~~~~~~~~~ 578 (839)
.|++++|.+..+|...
T Consensus 152 ~L~L~~N~l~~l~~~~ 167 (290)
T 1p9a_G 152 KLSLANNNLTELPAGL 167 (290)
T ss_dssp EEECTTSCCSCCCTTT
T ss_pred EEECCCCcCCccCHHH
Confidence 9999999988887643
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=1.3e-17 Score=175.08 Aligned_cols=153 Identities=16% Similarity=0.182 Sum_probs=115.3
Q ss_pred CCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccc--ccCcccc-------CCCCCcEEEccCCCcCC--Cccc-
Q 003203 405 YPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLL--SLPPSVH-------LLSNLQTLCLDQCVVGD--ISII- 472 (839)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~lp~~~~-------~l~~L~~L~l~~~~~~~--~~~~- 472 (839)
.++|+.|.+++|.. .+|..+... |++|++++|.+. .+|..+. ++++|++|++++|.+.. +..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 45677888888776 777766443 888899988885 4666655 78899999999998875 4444
Q ss_pred -CCCCCCCEEEccCCCCCCCchhhcCC-----CccCeEecCCCcCCCccCchhhcCccccCeEEccCCcccccccccccc
Q 003203 473 -GNLKKLEILSLVDSDIERLPNEIGQL-----TQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIE 546 (839)
Q Consensus 473 -~~l~~L~~L~l~~~~l~~lp~~i~~l-----~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 546 (839)
+.+++|++|++++|.++.+|..++.+ ++|++|++++|. ++.+++..++++++|++|++++|.+....
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------ 189 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGER------ 189 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHH------
T ss_pred HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcch------
Confidence 88999999999999988888877777 899999999887 67777555889999999999988754211
Q ss_pred ccccchhhh--ccCCCCCEEEEEecccc
Q 003203 547 RSNASLQEL--RHLSQLTTLEIQIQDAM 572 (839)
Q Consensus 547 ~~~~~l~~l--~~l~~L~~L~l~~~~~~ 572 (839)
..+..+ ..+++|+.|++++|.+.
T Consensus 190 ---~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 190 ---GLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp ---HHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred ---HHHHHHHhccCCCCCEEECCCCcCc
Confidence 112333 67788888888877654
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=4.1e-16 Score=160.64 Aligned_cols=184 Identities=21% Similarity=0.267 Sum_probs=153.7
Q ss_pred ccccccceEEecCCCCCCCCC-CC-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccC-ccccCCCCCc
Q 003203 381 DILKNCSAVFLNDIKTGVLPE-GL-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLP-PSVHLLSNLQ 457 (839)
Q Consensus 381 ~~~~~~~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~ 457 (839)
.+..+++.++++++.+..++. .+ .+++|++|++++|.. ..++...|.++++|++|++++|.+..++ ..+.++++|+
T Consensus 25 ~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcC-CccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 345689999999999988875 33 899999999999964 6677777899999999999999999775 6789999999
Q ss_pred EEEccCCCcCCC--cccCCCCCCCEEEccCCCCCC--CchhhcCCCccCeEecCCCcCCCccCchhhcCccccC----eE
Q 003203 458 TLCLDQCVVGDI--SIIGNLKKLEILSLVDSDIER--LPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLE----EL 529 (839)
Q Consensus 458 ~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~----~L 529 (839)
+|++++|.+... ..++++++|++|++++|.++. +|..+.++++|++|++++|. ++.++...+..+++|+ +|
T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEE
T ss_pred EEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceee
Confidence 999999998884 358999999999999999986 68999999999999999987 7777765577777777 89
Q ss_pred EccCCccccccccccccccccchhhhccCCCCCEEEEEeccccCCCccc
Q 003203 530 YMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGL 578 (839)
Q Consensus 530 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~ 578 (839)
++++|.+....+ ......+|+.|++++|.+..++...
T Consensus 183 ~ls~n~l~~~~~------------~~~~~~~L~~L~L~~n~l~~~~~~~ 219 (276)
T 2z62_A 183 DLSLNPMNFIQP------------GAFKEIRLKELALDTNQLKSVPDGI 219 (276)
T ss_dssp ECCSSCCCEECT------------TSSCSCCEEEEECCSSCCSCCCTTT
T ss_pred ecCCCcccccCc------------cccCCCcccEEECCCCceeecCHhH
Confidence 999998763222 2223348999999999998887654
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.67 E-value=9.3e-16 Score=158.70 Aligned_cols=173 Identities=24% Similarity=0.342 Sum_probs=152.0
Q ss_pred ccccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEcc
Q 003203 383 LKNCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLD 462 (839)
Q Consensus 383 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 462 (839)
+.+++.+.++++.+..++....+++|++|++++|.. ..++. +.++++|++|++++|.+..+|. +..+++|++|+++
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l-~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL-TDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECT
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCcc-CCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECC
Confidence 567999999999999898766899999999999875 45555 6899999999999999998765 8999999999999
Q ss_pred CCCcCCCcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcccccccc
Q 003203 463 QCVVGDISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEG 542 (839)
Q Consensus 463 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 542 (839)
+|.+..++.+..+++|++|++++|.++.+ ..+..+++|++|++++|. ++.+++ ++.+++|++|++++|.+..
T Consensus 121 ~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~~---- 192 (291)
T 1h6t_A 121 HNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHISD---- 192 (291)
T ss_dssp TSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCB----
T ss_pred CCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCCC----
Confidence 99999988899999999999999999988 568999999999999986 777776 8999999999999998751
Q ss_pred ccccccccchhhhccCCCCCEEEEEeccccCCCc
Q 003203 543 LNIERSNASLQELRHLSQLTTLEIQIQDAMILPK 576 (839)
Q Consensus 543 ~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 576 (839)
+..+..+++|+.|++++|.+...|.
T Consensus 193 ---------l~~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 193 ---------LRALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp ---------CGGGTTCTTCSEEEEEEEEEECCCE
T ss_pred ---------ChhhccCCCCCEEECcCCcccCCcc
Confidence 2458889999999999998877553
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=1.8e-15 Score=157.99 Aligned_cols=178 Identities=22% Similarity=0.285 Sum_probs=156.0
Q ss_pred ccccccccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcE
Q 003203 379 NNDILKNCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQT 458 (839)
Q Consensus 379 ~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 458 (839)
.-..+.+++.+++++|.+..++....+++|+.|++++|.. ..++ .+.++++|++|++++|.+..+|. +..+++|++
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l-~~~~--~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL-KNVS--AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQV 133 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCC-SCCG--GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcC-CCch--hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCE
Confidence 3344678999999999999888856899999999999984 5555 36899999999999999998875 899999999
Q ss_pred EEccCCCcCCCcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcccc
Q 003203 459 LCLDQCVVGDISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKW 538 (839)
Q Consensus 459 L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~ 538 (839)
|++++|.+..++.++.+++|++|++++|.++.++. +..+++|++|++++|. ++.++. +..+++|++|++++|.+..
T Consensus 134 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP--LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECTTSCCCB
T ss_pred EECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh--hcCCCCCCEEEccCCccCc
Confidence 99999999997779999999999999999999887 8999999999999986 777776 8999999999999998752
Q ss_pred ccccccccccccchhhhccCCCCCEEEEEeccccCCCcc
Q 003203 539 EFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKG 577 (839)
Q Consensus 539 ~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~ 577 (839)
+..+..+++|+.|++++|.+...|..
T Consensus 210 -------------~~~l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 210 -------------VSPLANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp -------------CGGGTTCTTCCEEEEEEEEEECCCEE
T ss_pred -------------cccccCCCCCCEEEccCCeeecCCee
Confidence 12378899999999999998877653
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=1.6e-15 Score=155.53 Aligned_cols=176 Identities=23% Similarity=0.347 Sum_probs=150.3
Q ss_pred cccccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCcc-ccCCCCCcEEE
Q 003203 382 ILKNCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPS-VHLLSNLQTLC 460 (839)
Q Consensus 382 ~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~ 460 (839)
.+.+++.+.+.++.+..++....+++|++|++++|.. ..++ .+.++++|++|++++|.++.+|.. ++.+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l-~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKL-HDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCC-CCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCC-CCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 3567999999999999888777899999999999975 4444 468999999999999999987654 68999999999
Q ss_pred ccCCCcCCC--cccCCCCCCCEEEccCCCCCCCchh-hcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccc
Q 003203 461 LDQCVVGDI--SIIGNLKKLEILSLVDSDIERLPNE-IGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVK 537 (839)
Q Consensus 461 l~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 537 (839)
+++|.+..+ ..++++++|++|++++|.++.+|.. ++.+++|++|++++|. ++.+++..++.+++|++|++++|.+.
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCC
Confidence 999999884 4489999999999999999988765 5899999999999986 77888776899999999999999876
Q ss_pred cccccccccccccchhhhccCCCCCEEEEEecccc
Q 003203 538 WEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAM 572 (839)
Q Consensus 538 ~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 572 (839)
...+ ..+..+++|+.|++++|...
T Consensus 195 ~~~~-----------~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 195 SVPD-----------GVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CCCT-----------TTTTTCTTCCEEECCSSCBC
T ss_pred ccCH-----------HHHhCCcCCCEEEccCCCcc
Confidence 3222 44788999999999988654
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=2.1e-16 Score=158.87 Aligned_cols=138 Identities=16% Similarity=0.242 Sum_probs=104.7
Q ss_pred CCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCc-ccccCc-cccCCCCCcEEEccC-CCcCCC--c
Q 003203 396 TGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQ-LLSLPP-SVHLLSNLQTLCLDQ-CVVGDI--S 470 (839)
Q Consensus 396 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~-~~~~l~~L~~L~l~~-~~~~~~--~ 470 (839)
+..+|. -.++++.|++++|. +..++...|.++++|++|++++|. ++.+|. .+..+++|++|++++ |.+..+ .
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC--CCCcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 666776 33478888888876 356676667888888888888886 777765 677888888888887 777763 4
Q ss_pred ccCCCCCCCEEEccCCCCCCCchhhcCCCccC---eEecCCCcCCCccCchhhcCccccC-eEEccCCccc
Q 003203 471 IIGNLKKLEILSLVDSDIERLPNEIGQLTQLR---CLDLSFCRNLKVIPPNVISKLTQLE-ELYMGNTSVK 537 (839)
Q Consensus 471 ~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~---~L~l~~~~~l~~~p~~~l~~l~~L~-~L~l~~~~~~ 537 (839)
.+.++++|++|++++|.++.+|. +..+++|+ +|++++|..++.+|...++++++|+ +|++++|.+.
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 67788888888888888888776 77777777 8888887457777776677788888 8888777654
No 90
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.65 E-value=6.7e-15 Score=157.97 Aligned_cols=294 Identities=12% Similarity=0.140 Sum_probs=172.9
Q ss_pred ccCCCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC-----CCHHH
Q 003203 28 LRSNQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST-----ANVKR 102 (839)
Q Consensus 28 ~~~~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~ 102 (839)
+.++..+..|+||++++++|.+ +.. +++.|+|++|+|||||+++++++.. . ..+|+++... .+...
T Consensus 6 ~~~~~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 6 TSPKDNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN----L-PYIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp SSCCCSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT----C-CEEEEEGGGGTTCSCCCHHH
T ss_pred CCCCCCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC----C-CEEEEEchhhccccCCCHHH
Confidence 4445566789999999999999 765 6999999999999999999998764 1 2578877653 34455
Q ss_pred HHHHHHHHhhhh------------------ccCCC--------chHHHHHHHHHHHc-C-CcEEEEEeCCCCccc-----
Q 003203 103 IQDEIADQLCLE------------------LCKGT--------ESERARTLFDRLWK-E-NKILVILDDICTSID----- 149 (839)
Q Consensus 103 ~~~~i~~~l~~~------------------~~~~~--------~~~~~~~~~~~l~~-~-~~~LlVlDdv~~~~~----- 149 (839)
+...+.+.+... .+... .......+.+.+.+ . ++++||+||++....
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchh
Confidence 555555444210 00000 01122334444432 1 489999999976432
Q ss_pred cccccccCCCCCCCceEEEEeCchhhhhhh---------cC-c-cceEEccCCCHHHHHHHHHHHhCC-CCCCcchHHHH
Q 003203 150 LVTVGIPFGNAHRGCKILLASRYRDILVSE---------MH-S-QYNYCVSVLNKEEAWSLFKKMVGD-YVEDSDLESIA 217 (839)
Q Consensus 150 ~~~l~~~l~~~~~~s~iivTtr~~~~~~~~---------~~-~-~~~~~l~~L~~~ea~~Lf~~~~~~-~~~~~~~~~~~ 217 (839)
+..+...+....++.++|+|++........ .. . ...+++.+|+.+|+.+++.+.++. .....+ .
T Consensus 157 ~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~ 232 (357)
T 2fna_A 157 LLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----Y 232 (357)
T ss_dssp CHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----H
T ss_pred HHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----H
Confidence 211111111112467899999976532100 11 1 357999999999999999987631 111111 2
Q ss_pred HHHHHHhCCchhHHHHHHHHhcCC-ChhHHHH-HHHHhhcccccchHHHHhhhh-ccc--cccchhHHHHHHHhcccCCC
Q 003203 218 IQVANECGGLPLAIVIVARALRNK-PLSEWKG-ALLKLRSSAGKLDALVYSSIE-LSY--NYLIDQVLKSAFLLCGLLKH 292 (839)
Q Consensus 218 ~~I~~~~~G~Plai~~~~~~L~~~-~~~~w~~-~l~~l~~~~~~~~~~~~~~l~-~sy--~~L~~~~lk~~fl~~a~fp~ 292 (839)
..|++.++|+|+++..++..+... +...|.. +.+.. ...+...+. +.+ ..+++. .+..+..+|. .
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~l~~~-~~~~l~~la~-g- 302 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA-------KKLILKEFENFLHGREIARKR-YLNIMRTLSK-C- 302 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------HHHHHHHHHHHHTTCGGGHHH-HHHHHHHHTT-C-
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-------HHHHHHHHHHHhhccccccHH-HHHHHHHHHc-C-
Confidence 789999999999999998876432 3323311 11111 001111111 111 167777 4888888887 2
Q ss_pred CCCCcHHHHHHhhh-ccccccccccHHHHHHHHHHHHHHHHhcccccCCCCCCeEE-eeehHHHHH
Q 003203 293 PYDASVMDLLKHGM-GLGLFEGIYTMQERRDRVYALVHILKDSCLLLDGRTEDWFS-MHDIVRNVA 356 (839)
Q Consensus 293 ~~~~~~~~li~~w~-~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~-mH~lv~~~~ 356 (839)
. +...+..... ..|. .. ....+..+++.|.+.+++...+ +.|+ .|++++++.
T Consensus 303 -~--~~~~l~~~~~~~~g~--~~-----~~~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 303 -G--KWSDVKRALELEEGI--EI-----SDSEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp -B--CHHHHHHHHHHHHCS--CC-----CHHHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred -C--CHHHHHHHHHHhcCC--CC-----CHHHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 2 4444432110 0110 00 1234556789999999997652 4566 478888764
No 91
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.63 E-value=4.4e-16 Score=163.32 Aligned_cols=173 Identities=18% Similarity=0.184 Sum_probs=106.0
Q ss_pred CCCccEEeecCCCCCCCCChhhh-cCCCCccEEEeCCCcccccCccccCC-----CCCcEEEccCCCcCCC--cccCCCC
Q 003203 405 YPQLDFFCMNSKDPFFKMPENFF-TGMSKLRGLALSEMQLLSLPPSVHLL-----SNLQTLCLDQCVVGDI--SIIGNLK 476 (839)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~lp~~~~~l-----~~L~~L~l~~~~~~~~--~~~~~l~ 476 (839)
+++|++|++++|.....+|..+| ..+++|++|++++|.+..+|..++.+ ++|++|++++|.+..+ ..+++++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 66677777777665555555543 66777777777777777666666655 6777777777766662 4667777
Q ss_pred CCCEEEccCCCCCC---Cchhh--cCCCccCeEecCCCcCCCc---cCchhhcCccccCeEEccCCcccccccccccccc
Q 003203 477 KLEILSLVDSDIER---LPNEI--GQLTQLRCLDLSFCRNLKV---IPPNVISKLTQLEELYMGNTSVKWEFEGLNIERS 548 (839)
Q Consensus 477 ~L~~L~l~~~~l~~---lp~~i--~~l~~L~~L~l~~~~~l~~---~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 548 (839)
+|++|++++|++.. +|..+ +.+++|++|++++|. ++. ++...+.++++|++|++++|.+....+
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------- 245 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAG------- 245 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-------
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-------
Confidence 77777777776542 24444 667777777777765 442 333334566777777777776642211
Q ss_pred ccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEE
Q 003203 549 NASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIY 589 (839)
Q Consensus 549 ~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~ 589 (839)
...+..+++|+.|++++|.+..+|..+. .+|+.|+++
T Consensus 246 ---~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls 282 (312)
T 1wwl_A 246 ---APSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLS 282 (312)
T ss_dssp ---CSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECC
T ss_pred ---hhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECC
Confidence 1233446677777777777766665544 444444443
No 92
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=5.5e-16 Score=172.70 Aligned_cols=185 Identities=15% Similarity=0.174 Sum_probs=147.7
Q ss_pred ccccceEEecCCCCCCCCC-CC-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEE
Q 003203 383 LKNCSAVFLNDIKTGVLPE-GL-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLC 460 (839)
Q Consensus 383 ~~~~~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~ 460 (839)
..+++.+++++|.+..++. .+ .+++|++|++++|.... .++ +..+++|++|++++|.+..+|.. ++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE-EEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC-Ccc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEE
Confidence 4479999999999988764 33 89999999999998543 333 68999999999999999987643 8999999
Q ss_pred ccCCCcCCCcccCCCCCCCEEEccCCCCCCC-chhhcCCCccCeEecCCCcCCCc-cCchhhc-CccccCeEEccCCccc
Q 003203 461 LDQCVVGDISIIGNLKKLEILSLVDSDIERL-PNEIGQLTQLRCLDLSFCRNLKV-IPPNVIS-KLTQLEELYMGNTSVK 537 (839)
Q Consensus 461 l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~-~p~~~l~-~l~~L~~L~l~~~~~~ 537 (839)
+++|.+..++. ..+++|++|++++|.++.+ |..++++++|++|++++|. ++. .|.. +. .+++|++|++++|.+.
T Consensus 106 L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAE-LAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGG-GGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHH-HhhhCCcccEEecCCCccc
Confidence 99999988432 3578999999999999977 5578999999999999987 554 4544 54 8999999999999976
Q ss_pred cccccccccccccchhhhccCCCCCEEEEEeccccCCCccccc-cccceEEEEE
Q 003203 538 WEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFS-KKLERYKIYI 590 (839)
Q Consensus 538 ~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~l~l~~ 590 (839)
.. .....+++|+.|++++|.+..+|..+.. ++|+.|+++.
T Consensus 183 ~~-------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~ 223 (487)
T 3oja_A 183 DV-------------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN 223 (487)
T ss_dssp EE-------------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTT
T ss_pred cc-------------cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecC
Confidence 22 2244689999999999999888765432 4555555443
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=3.3e-16 Score=166.66 Aligned_cols=134 Identities=17% Similarity=0.175 Sum_probs=92.0
Q ss_pred hhhcCC--CCccEEEeCCCcccccCccccCCCCCcEEEccCCCcCC---CcccCCCCCCCEEEccCCCCC-CCchhhcCC
Q 003203 425 NFFTGM--SKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGD---ISIIGNLKKLEILSLVDSDIE-RLPNEIGQL 498 (839)
Q Consensus 425 ~~~~~l--~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l 498 (839)
..+..+ +++++|++++|.+...+..+..+++|++|++++|.+.. +..+.++++|++|++++|.++ ..|..++++
T Consensus 62 ~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~ 141 (336)
T 2ast_B 62 DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN 141 (336)
T ss_dssp HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC
T ss_pred HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcC
Confidence 344555 77888888888887766667778888888888887654 345677788888888888776 556677778
Q ss_pred CccCeEecCCCcCCCc--cCchhhcCccccCeEEccCC-ccccccccccccccccchhhhccCC-CCCEEEEEec
Q 003203 499 TQLRCLDLSFCRNLKV--IPPNVISKLTQLEELYMGNT-SVKWEFEGLNIERSNASLQELRHLS-QLTTLEIQIQ 569 (839)
Q Consensus 499 ~~L~~L~l~~~~~l~~--~p~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~l~~l~-~L~~L~l~~~ 569 (839)
++|++|++++|..++. ++.. ++++++|++|++++| .+.. ......+..++ +|++|++++|
T Consensus 142 ~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~----------~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 142 SNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTE----------KHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCH----------HHHHHHHHHSCTTCCEEECCSC
T ss_pred CCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcCh----------HHHHHHHHhcccCCCEEEeCCC
Confidence 8888888888754553 3433 667778888888777 5431 11223456666 7777776655
No 94
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.62 E-value=2.3e-14 Score=156.96 Aligned_cols=306 Identities=12% Similarity=0.062 Sum_probs=179.3
Q ss_pred CccccchHHHHHHHHHHh-c----C--CCeeEEEE--EcCCCCcHHHHHHHHHHHHHHhc---cCC-eEEEEEEecCCCH
Q 003203 34 YKSFESRKSILCDILDWL-T----S--PNVNMIGV--YGIGGVGKTALMHEVLFEAKKQN---LFD-QVIFVLASSTANV 100 (839)
Q Consensus 34 ~~~fvgR~~~~~~l~~~l-~----~--~~~~~v~I--~G~~GiGKTtLa~~~~~~~~~~~---~f~-~~~wv~~~~~~~~ 100 (839)
+..|+||+++++++.+++ . . ...+.+.| +|++|+||||||++++++..... .+. .++|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999998 4 2 24567777 99999999999999998876421 123 3677777677788
Q ss_pred HHHHHHHHHHhhhhccC--CCchHHHHHHHHHHH-cCCcEEEEEeCCCCcc--------ccccccccCCCC---C--CCc
Q 003203 101 KRIQDEIADQLCLELCK--GTESERARTLFDRLW-KENKILVILDDICTSI--------DLVTVGIPFGNA---H--RGC 164 (839)
Q Consensus 101 ~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~-~~~~~LlVlDdv~~~~--------~~~~l~~~l~~~---~--~~s 164 (839)
..++..++.+++..... .+..+....+.+.+. .+++++||+||++... .+..+...+... + ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 89999999988754322 122333444444443 3679999999998642 222222222111 2 345
Q ss_pred eEEEEeCchhhhhh--------hcCccceEEccCCCHHHHHHHHHHHhCCC-CCCcchHHHHHHHHHHhC------Cchh
Q 003203 165 KILLASRYRDILVS--------EMHSQYNYCVSVLNKEEAWSLFKKMVGDY-VEDSDLESIAIQVANECG------GLPL 229 (839)
Q Consensus 165 ~iivTtr~~~~~~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~-~~~~~~~~~~~~I~~~~~------G~Pl 229 (839)
.+|+||+...+... .......+++++++.++++++|..++... ....-..+....|++.++ |.|.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~ 260 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSAR 260 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHH
Confidence 58888876553210 01112339999999999999998765210 011122456889999999 9997
Q ss_pred HHHHHHHHh---c---CC---ChhHHHHHHHHhhcccccchHHHHhhhhccccccchhHHHHHHHhcccCC--CCCCCcH
Q 003203 230 AIVIVARAL---R---NK---PLSEWKGALLKLRSSAGKLDALVYSSIELSYNYLIDQVLKSAFLLCGLLK--HPYDASV 298 (839)
Q Consensus 230 ai~~~~~~L---~---~~---~~~~w~~~l~~l~~~~~~~~~~~~~~l~~sy~~L~~~~lk~~fl~~a~fp--~~~~~~~ 298 (839)
.+..++... . +. +.+.+......... ...+.-++..||+++ +.++..++.+. .+..+..
T Consensus 261 ~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~-~~~l~aia~l~~~~~~~~~~ 330 (412)
T 1w5s_A 261 RAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHE-LIILRLIAEATLGGMEWINA 330 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHH-HHHHHHHHHHHHTTCSSBCH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHH-HHHHHHHHHHHhcCCCCccH
Confidence 655554321 1 11 22333333222110 224566788899884 88888787643 2234444
Q ss_pred HHHHHhhhccc--cccccccHHHHHHHHHHHHHHHHhcccccCCC----CCCeEEeeehH
Q 003203 299 MDLLKHGMGLG--LFEGIYTMQERRDRVYALVHILKDSCLLLDGR----TEDWFSMHDIV 352 (839)
Q Consensus 299 ~~li~~w~~~g--~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~----~~~~~~mH~lv 352 (839)
.++...+.... .. +... .....+..+++.|.+.+++.... ..+.|++|.+.
T Consensus 331 ~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 331 GLLRQRYEDASLTMY-NVKP--RGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHHHHHHHHHHS-CCCC--CCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred HHHHHHHHHHHHhhc-CCCC--CCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 44443331100 00 0000 01234556789999999986531 23456677665
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=4.8e-16 Score=165.34 Aligned_cols=126 Identities=20% Similarity=0.151 Sum_probs=94.2
Q ss_pred CCccEEEeCCCcccccCccccCC--CCCcEEEccCCCcCC-CcccCCCCCCCEEEccCCCCCC--CchhhcCCCccCeEe
Q 003203 431 SKLRGLALSEMQLLSLPPSVHLL--SNLQTLCLDQCVVGD-ISIIGNLKKLEILSLVDSDIER--LPNEIGQLTQLRCLD 505 (839)
Q Consensus 431 ~~L~~L~l~~~~~~~lp~~~~~l--~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~ 505 (839)
..++.++++++.+. |..+..+ +++++|++++|.+.. ++.+.++++|++|++++|.+.. +|..+.++++|++|+
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 34788888888776 4556666 889999999998777 4667788999999999998773 777888999999999
Q ss_pred cCCCcCCCccCchhhcCccccCeEEccCC-ccccccccccccccccchhhhccCCCCCEEEEEec
Q 003203 506 LSFCRNLKVIPPNVISKLTQLEELYMGNT-SVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQ 569 (839)
Q Consensus 506 l~~~~~l~~~p~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~ 569 (839)
+++|......+.. ++++++|++|++++| .+.. ......+..+++|+.|++++|
T Consensus 125 L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~----------~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 125 LEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSE----------FALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp CTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCH----------HHHHHHHHHCTTCCEEECCCC
T ss_pred CcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCH----------HHHHHHHhcCCCCCEEcCCCC
Confidence 9998633344444 788999999999988 3421 112234667778888877766
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=4.8e-15 Score=168.23 Aligned_cols=173 Identities=25% Similarity=0.351 Sum_probs=152.0
Q ss_pred ccccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEcc
Q 003203 383 LKNCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLD 462 (839)
Q Consensus 383 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 462 (839)
+..++.|.++++.+..+|....+++|+.|++++|.. ..++. +..+++|++|+|++|.+..+| .+..+++|++|+|+
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l-~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL-TDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCC-CCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECT
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCC-CCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEec
Confidence 567899999999999998766899999999999875 45555 689999999999999999877 68999999999999
Q ss_pred CCCcCCCcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcccccccc
Q 003203 463 QCVVGDISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEG 542 (839)
Q Consensus 463 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 542 (839)
+|.+..++.+..|++|+.|+|++|.++.+ ..+..+++|+.|++++|. +..+++ +..+++|+.|+|++|.+..
T Consensus 118 ~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~~---- 189 (605)
T 1m9s_A 118 HNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHISD---- 189 (605)
T ss_dssp TSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCB----
T ss_pred CCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCCC----
Confidence 99999988899999999999999999988 578999999999999987 777766 8999999999999998751
Q ss_pred ccccccccchhhhccCCCCCEEEEEeccccCCCc
Q 003203 543 LNIERSNASLQELRHLSQLTTLEIQIQDAMILPK 576 (839)
Q Consensus 543 ~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 576 (839)
+..+..+++|+.|++++|.+...|.
T Consensus 190 ---------l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 190 ---------LRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp ---------CGGGTTCTTCSEEECCSEEEECCCC
T ss_pred ---------ChHHccCCCCCEEEccCCcCcCCcc
Confidence 2458889999999999998876654
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=5.4e-15 Score=152.92 Aligned_cols=181 Identities=24% Similarity=0.259 Sum_probs=147.2
Q ss_pred EecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCCCcCCC
Q 003203 390 FLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGDI 469 (839)
Q Consensus 390 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~ 469 (839)
.+....+..+.....+++|+.|++++|.. ..++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..+
T Consensus 30 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i-~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~ 105 (291)
T 1h6t_A 30 NLKKKSVTDAVTQNELNSIDQIIANNSDI-KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDL 105 (291)
T ss_dssp HTTCSCTTSEECHHHHHTCCEEECTTSCC-CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCG
T ss_pred HhcCCCcccccchhhcCcccEEEccCCCc-ccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCC
Confidence 34444444443334678999999999874 55654 6889999999999999998887 99999999999999999998
Q ss_pred cccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccccccc
Q 003203 470 SIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSN 549 (839)
Q Consensus 470 ~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 549 (839)
+.++++++|++|++++|.++.++ .+..+++|++|++++|. ++.++. ++.+++|++|++++|.+..
T Consensus 106 ~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~~----------- 170 (291)
T 1h6t_A 106 SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISD----------- 170 (291)
T ss_dssp GGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCC-----------
T ss_pred hhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCcccc-----------
Confidence 88999999999999999999874 68899999999999986 777743 8999999999999998752
Q ss_pred cchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEc
Q 003203 550 ASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIG 591 (839)
Q Consensus 550 ~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~ 591 (839)
+..+..+++|+.|++++|.+..++.....++|+.|++..+
T Consensus 171 --~~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 171 --IVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp --CGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEE
T ss_pred --chhhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCC
Confidence 1228889999999999999888765333355666655544
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=7.9e-15 Score=156.38 Aligned_cols=239 Identities=19% Similarity=0.205 Sum_probs=159.1
Q ss_pred cEEEeCCCcccccCccccCCCCCcEEEccCCCcCCC--cccCCCCCCCEEEccCCCCC-CCch-hhcCCCccCeEecCCC
Q 003203 434 RGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGDI--SIIGNLKKLEILSLVDSDIE-RLPN-EIGQLTQLRCLDLSFC 509 (839)
Q Consensus 434 ~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~l~-~lp~-~i~~l~~L~~L~l~~~ 509 (839)
++++.++++++++|..+ .+++++|+|++|.++.+ ..|.++++|++|+|++|.+. .+|. .+.++++|+++...++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 67888888999999876 36788888888888774 35788888888888888764 3554 3567777776555554
Q ss_pred cCCCccCchhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCCEEEEEe-ccccCCCccccccccceEEE
Q 003203 510 RNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQI-QDAMILPKGLFSKKLERYKI 588 (839)
Q Consensus 510 ~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~l~l 588 (839)
..++.++++.++.+++|++|++++|.+....+ .......++..|++.. +.+..++...+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~-----------~~~~~~~~l~~l~l~~~~~i~~l~~~~f~-------- 150 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-----------VHKIHSLQKVLLDIQDNINIHTIERNSFV-------- 150 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCC-----------CTTCCBSSCEEEEEESCTTCCEECTTSST--------
T ss_pred CcccccCchhhhhccccccccccccccccCCc-----------hhhcccchhhhhhhccccccccccccchh--------
Confidence 55777776667777788888777776642211 1122233445555543 233333322110
Q ss_pred EEcCCCCCCCCCCCccEEEecccCCcchHHHHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeec
Q 003203 589 YIGDEWDWSGKSDNTRALKLKLCSSIYLDEILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITD 668 (839)
Q Consensus 589 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 668 (839)
.....++.|++.++ .++.+.... ...++|+.|.+.++..++.++.
T Consensus 151 --------------------------------~~~~~l~~L~L~~N-~i~~i~~~~--f~~~~L~~l~l~~~n~l~~i~~ 195 (350)
T 4ay9_X 151 --------------------------------GLSFESVILWLNKN-GIQEIHNSA--FNGTQLDELNLSDNNNLEELPN 195 (350)
T ss_dssp --------------------------------TSBSSCEEEECCSS-CCCEECTTS--STTEEEEEEECTTCTTCCCCCT
T ss_pred --------------------------------hcchhhhhhccccc-cccCCChhh--ccccchhHHhhccCCcccCCCH
Confidence 01124556666553 233332221 2346899999998888887764
Q ss_pred CCCcccccccccchhhhhcccccccccccccccccccCCCCEEEEecCCCcccccchhhhhcCCCccEEEEec
Q 003203 669 STAWVCFDAFPLLESLVLHNLIHMEKICHSQLTAVSFCNLKIIKVRNCDRLKNVFSFSIARGLPQLQTITVIK 741 (839)
Q Consensus 669 ~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~l~~ 741 (839)
. .+..+++|+.|+++++ .++.++ ...|.+|+.|.+.+|.+++.+|. +..+++|+.+++.+
T Consensus 196 ~----~f~~l~~L~~LdLs~N-~l~~lp-----~~~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 196 D----VFHGASGPVILDISRT-RIHSLP-----SYGLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp T----TTTTEECCSEEECTTS-CCCCCC-----SSSCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred H----HhccCcccchhhcCCC-CcCccC-----hhhhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 2 4567899999999985 577664 34578999999999999999986 47889999999865
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=2.7e-14 Score=144.50 Aligned_cols=155 Identities=21% Similarity=0.365 Sum_probs=136.2
Q ss_pred ccccccceEEecCCCCCCCCCC-C-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCc-cccCCCCCc
Q 003203 381 DILKNCSAVFLNDIKTGVLPEG-L-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPP-SVHLLSNLQ 457 (839)
Q Consensus 381 ~~~~~~~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~ 457 (839)
.+..+++.+.++++.+..++.. + .+++|++|++++|.. ..++...|.++++|++|++++|.+..+|. .+..+++|+
T Consensus 32 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 110 (251)
T 3m19_A 32 GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD 110 (251)
T ss_dssp CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC-CccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCC
Confidence 3457899999999999877763 3 899999999999875 56777778999999999999999998864 568999999
Q ss_pred EEEccCCCcCCC--cccCCCCCCCEEEccCCCCCCCch-hhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCC
Q 003203 458 TLCLDQCVVGDI--SIIGNLKKLEILSLVDSDIERLPN-EIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNT 534 (839)
Q Consensus 458 ~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~ 534 (839)
+|++++|.+..+ ..+.++++|++|++++|.++.+|. .++.+++|++|++++|. ++.+++..+..+++|++|++++|
T Consensus 111 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCC
Confidence 999999999884 347899999999999999999887 58999999999999986 78888766899999999999999
Q ss_pred ccc
Q 003203 535 SVK 537 (839)
Q Consensus 535 ~~~ 537 (839)
.+.
T Consensus 190 ~~~ 192 (251)
T 3m19_A 190 QFD 192 (251)
T ss_dssp CBC
T ss_pred cee
Confidence 875
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=3.1e-14 Score=141.54 Aligned_cols=149 Identities=23% Similarity=0.342 Sum_probs=127.3
Q ss_pred cceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCcc-ccCCCCCcEEEccCC
Q 003203 386 CSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPS-VHLLSNLQTLCLDQC 464 (839)
Q Consensus 386 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~ 464 (839)
.+.+..+++.+..+|..+. ++|+.|++++|.. ..++...|.++++|++|+|++|.+..+|.. +..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQI-TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCcc-CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4568888888888987654 8899999999875 456556678999999999999999988754 688999999999999
Q ss_pred CcCCC--cccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccc
Q 003203 465 VVGDI--SIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVK 537 (839)
Q Consensus 465 ~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 537 (839)
.+..+ ..+..+++|++|++++|.++.+|..+..+++|++|++++|. ++.++...+..+++|+.|++.+|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 98884 34788999999999999999999999999999999999986 78888776889999999999998865
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.58 E-value=4.9e-15 Score=150.67 Aligned_cols=172 Identities=20% Similarity=0.218 Sum_probs=145.6
Q ss_pred ccccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEcc
Q 003203 383 LKNCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLD 462 (839)
Q Consensus 383 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 462 (839)
+.++..+.+..+.+..++....+++|+.|++++|.. ..++ .+..+++|++|++++|.+..+|. +..+++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i-~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNI-QSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCC-CCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCc-ccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 455667777888887777555889999999999864 5666 36889999999999999998887 9999999999999
Q ss_pred CCCcCCCcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcccccccc
Q 003203 463 QCVVGDISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEG 542 (839)
Q Consensus 463 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 542 (839)
+|.+..++.+.. .+|++|++++|.++.++ .+.++++|++|++++|. ++.++. ++.+++|++|++++|.+..
T Consensus 94 ~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~~---- 164 (263)
T 1xeu_A 94 RNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITN---- 164 (263)
T ss_dssp SSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCCB----
T ss_pred CCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCcc----
Confidence 999998766666 99999999999999886 58999999999999987 777763 8999999999999998751
Q ss_pred ccccccccchhhhccCCCCCEEEEEeccccCCCc
Q 003203 543 LNIERSNASLQELRHLSQLTTLEIQIQDAMILPK 576 (839)
Q Consensus 543 ~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 576 (839)
+..+..+++|+.|++++|.....|.
T Consensus 165 ---------~~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 165 ---------TGGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp ---------CTTSTTCCCCCEEEEEEEEEECCCE
T ss_pred ---------hHHhccCCCCCEEeCCCCcccCCcc
Confidence 1567889999999999998877654
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=1.3e-14 Score=140.87 Aligned_cols=147 Identities=18% Similarity=0.256 Sum_probs=81.8
Q ss_pred ccccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccc-cCccccCCCCCcEEEc
Q 003203 383 LKNCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLS-LPPSVHLLSNLQTLCL 461 (839)
Q Consensus 383 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l 461 (839)
+.+++.++++++.+..+|....+++|++|++++|. ...++ .+.++++|++|++++|.+.. .|..++.+++|++|++
T Consensus 43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~-~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIH-ATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCC-CSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred cCCccEEeccCCCccChHHHhcCCCCCEEEccCCC-CCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 34566666666666666643356666666666653 23332 24556666666666666553 4555566666666666
Q ss_pred cCCCcCC--CcccCCCCCCCEEEccCCC-CCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcc
Q 003203 462 DQCVVGD--ISIIGNLKKLEILSLVDSD-IERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSV 536 (839)
Q Consensus 462 ~~~~~~~--~~~~~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~ 536 (839)
++|.+.. +..++++++|++|++++|. ++.+| .+..+++|++|++++|. ++.++. +..+++|++|++++|.+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECBC--
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeCccc
Confidence 6665554 4455556666666666664 55554 45555666666665554 444442 55555555555555543
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.57 E-value=1.5e-14 Score=141.81 Aligned_cols=165 Identities=23% Similarity=0.356 Sum_probs=136.1
Q ss_pred ceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCcc-ccCCCCCcEEEccCCC
Q 003203 387 SAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPS-VHLLSNLQTLCLDQCV 465 (839)
Q Consensus 387 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 465 (839)
+.+...++.+..+|..+ .++|+.|++++|.. ..++...|.++++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSL-KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCcc-CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45677777777787654 46899999999875 577777788999999999999999988764 5889999999999999
Q ss_pred cCCC--cccCCCCCCCEEEccCCCCCCCchh-hcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcccccccc
Q 003203 466 VGDI--SIIGNLKKLEILSLVDSDIERLPNE-IGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEG 542 (839)
Q Consensus 466 ~~~~--~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 542 (839)
+..+ ..++++++|++|++++|.++.+|.. +.++++|++|++++|. ++.++...++.+++|++|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee-----
Confidence 8884 3478999999999999999988765 6889999999999986 77888776889999999999998763
Q ss_pred ccccccccchhhhccCCCCCEEEEEecccc
Q 003203 543 LNIERSNASLQELRHLSQLTTLEIQIQDAM 572 (839)
Q Consensus 543 ~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 572 (839)
..+++|+.|+++.+...
T Consensus 162 -------------~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 162 -------------CTCPGIRYLSEWINKHS 178 (208)
T ss_dssp -------------CCTTTTHHHHHHHHHCT
T ss_pred -------------cCCCCHHHHHHHHHhCC
Confidence 34567777777776665
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.56 E-value=1.6e-14 Score=154.10 Aligned_cols=147 Identities=17% Similarity=0.196 Sum_probs=74.3
Q ss_pred eEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccc-ccCc-cccCCCCCcE-EEccCC
Q 003203 388 AVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLL-SLPP-SVHLLSNLQT-LCLDQC 464 (839)
Q Consensus 388 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~-~~~~l~~L~~-L~l~~~ 464 (839)
.+..+++.+.++|..+ .++++.|++++|. +..+|.+.|.++++|++|+|++|.+. .+|. .+.++++|+. +.+++|
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 3444555555666544 2455666666554 34555555566666666666666553 3332 3455555443 333444
Q ss_pred CcCC--CcccCCCCCCCEEEccCCCCCCCch-hhcCCCccCeEecCCCcCCCccCchhhcCcc-ccCeEEccCCcc
Q 003203 465 VVGD--ISIIGNLKKLEILSLVDSDIERLPN-EIGQLTQLRCLDLSFCRNLKVIPPNVISKLT-QLEELYMGNTSV 536 (839)
Q Consensus 465 ~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~-~L~~L~l~~~~~ 536 (839)
.+.. +..+.++++|++|++++|.++.+|. ......++..|++.++..+..++...+..+. .++.|++++|.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 5544 2345555666666666665555543 2233444555555554445555543333332 344555555444
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.56 E-value=1.6e-14 Score=140.05 Aligned_cols=150 Identities=18% Similarity=0.275 Sum_probs=126.0
Q ss_pred CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCCCcCC--CcccCCCCCCCEE
Q 003203 404 EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGD--ISIIGNLKKLEIL 481 (839)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L 481 (839)
.+++|+.|++++|.. ..++. +..+++|++|++++|.+..++ .+..+++|++|++++|.+.. +..++++++|++|
T Consensus 42 ~l~~L~~L~l~~n~i-~~l~~--l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINV-TDLTG--IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCC-SCCTT--GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCc-cChHH--HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 677899999998875 46663 688999999999999776654 78899999999999999886 7889999999999
Q ss_pred EccCCCCCC-CchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccccccccchhhhccCCC
Q 003203 482 SLVDSDIER-LPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQ 560 (839)
Q Consensus 482 ~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~ 560 (839)
++++|.++. .|..++.+++|++|++++|..++.+|. ++.+++|++|++++|.+.. +..+..+++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~-------------~~~l~~l~~ 182 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD-------------YRGIEDFPK 182 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC-------------CTTGGGCSS
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC-------------hHHhccCCC
Confidence 999999884 678899999999999999876888874 8999999999999998751 235788899
Q ss_pred CCEEEEEecccc
Q 003203 561 LTTLEIQIQDAM 572 (839)
Q Consensus 561 L~~L~l~~~~~~ 572 (839)
|+.|++++|.+.
T Consensus 183 L~~L~l~~N~i~ 194 (197)
T 4ezg_A 183 LNQLYAFSQTIG 194 (197)
T ss_dssp CCEEEECBC---
T ss_pred CCEEEeeCcccC
Confidence 999999988754
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.55 E-value=4.2e-14 Score=139.58 Aligned_cols=148 Identities=22% Similarity=0.283 Sum_probs=113.3
Q ss_pred ceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccccc-CccccCCCCCcEEEccCCC
Q 003203 387 SAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSL-PPSVHLLSNLQTLCLDQCV 465 (839)
Q Consensus 387 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~ 465 (839)
+.+...++.+..+|..+. ++++.|++++|.. ..++...|.++++|++|+|++|.+..+ |..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i-~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCC-CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcC-CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456777777888887554 6788888888764 566666678888888888888888866 6678888888888888888
Q ss_pred cCCC--cccCCCCCCCEEEccCCCCCCC-chhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccc
Q 003203 466 VGDI--SIIGNLKKLEILSLVDSDIERL-PNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVK 537 (839)
Q Consensus 466 ~~~~--~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 537 (839)
+..+ ..+.++++|++|++++|.++.+ |..+..+++|++|++++|. ++.+++..+..+++|++|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 8774 3367788888888888888866 4567788888888888876 67777666778888888888887764
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.55 E-value=3.7e-14 Score=139.99 Aligned_cols=149 Identities=16% Similarity=0.236 Sum_probs=113.3
Q ss_pred ceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCc-cccCCCCCcEEEccCCC
Q 003203 387 SAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPP-SVHLLSNLQTLCLDQCV 465 (839)
Q Consensus 387 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~ 465 (839)
+.+.++++.+..+|..+ ...++.|++++|......+..+|.++++|++|++++|.++.++. .+..+++|++|++++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 46788888888888654 34567888888875433355667888888888888888887755 67888888888888888
Q ss_pred cCCC--cccCCCCCCCEEEccCCCCCCC-chhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccc
Q 003203 466 VGDI--SIIGNLKKLEILSLVDSDIERL-PNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVK 537 (839)
Q Consensus 466 ~~~~--~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 537 (839)
+..+ ..++++++|++|++++|.++.+ |..+..+++|++|++++|. ++.+++..+..+++|++|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 8773 4478888888888888888876 5667888888888888876 66665555788888888888888764
No 108
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=7.8e-15 Score=153.69 Aligned_cols=151 Identities=16% Similarity=0.117 Sum_probs=78.1
Q ss_pred ccceEEecCCCCC-CCCCC---CCCCCccEEeecCCCCCCCCC---hhhhcCCCCccEEEeCCCcccccC-ccccCCCCC
Q 003203 385 NCSAVFLNDIKTG-VLPEG---LEYPQLDFFCMNSKDPFFKMP---ENFFTGMSKLRGLALSEMQLLSLP-PSVHLLSNL 456 (839)
Q Consensus 385 ~~~~l~l~~~~~~-~l~~~---~~~~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L 456 (839)
+++.+.+++|.+. ..|.. ..+++|++|++++|......+ ...+..+++|++|++++|.+..+| ..++.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 3566666666553 33332 345566666666655433222 122234556666666666665443 455566666
Q ss_pred cEEEccCCCcCC------CcccCCCCCCCEEEccCCCCCCCchh----hcCCCccCeEecCCCcCCCcc-CchhhcCc--
Q 003203 457 QTLCLDQCVVGD------ISIIGNLKKLEILSLVDSDIERLPNE----IGQLTQLRCLDLSFCRNLKVI-PPNVISKL-- 523 (839)
Q Consensus 457 ~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~l~~~~~l~~~-p~~~l~~l-- 523 (839)
++|++++|.+.. ...++++++|++|++++|+++.+|.. ++.+++|++|++++|. ++.. |.. ++.+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~-~~~~~~ 249 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPS-APRCMW 249 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSC-CSSCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhh-HHhccC
Confidence 666666665432 12234556666666666666554432 3455666666666655 3333 433 3333
Q ss_pred -cccCeEEccCCccc
Q 003203 524 -TQLEELYMGNTSVK 537 (839)
Q Consensus 524 -~~L~~L~l~~~~~~ 537 (839)
++|++|++++|.+.
T Consensus 250 ~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 250 SSALNSLNLSFAGLE 264 (310)
T ss_dssp CTTCCCEECCSSCCC
T ss_pred cCcCCEEECCCCCCC
Confidence 46666666666554
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=6e-15 Score=167.41 Aligned_cols=186 Identities=23% Similarity=0.234 Sum_probs=151.5
Q ss_pred ccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCC
Q 003203 385 NCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQC 464 (839)
Q Consensus 385 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~ 464 (839)
.+..+.+..+.+..+.....+++|+.|.+++|.. ..++. +..+++|++|+|++|.+..+|+ +..+++|++|+|++|
T Consensus 22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i-~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI-KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCC-CCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS
T ss_pred HHHHHhccCCCcccccchhcCCCCCEEECcCCCC-CCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC
Confidence 3444455555555555545788999999998874 55653 6889999999999999998887 899999999999999
Q ss_pred CcCCCcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcccccccccc
Q 003203 465 VVGDISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLN 544 (839)
Q Consensus 465 ~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 544 (839)
.+..++.+..+++|++|+|++|.+..++ .+..+++|+.|++++|. +..++. ++.+++|+.|+|++|.+...
T Consensus 98 ~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~~----- 168 (605)
T 1m9s_A 98 KIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISDI----- 168 (605)
T ss_dssp CCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCCCC-----
T ss_pred CCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCCCc-----
Confidence 9999889999999999999999999875 58999999999999987 777743 89999999999999987521
Q ss_pred ccccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEc
Q 003203 545 IERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIG 591 (839)
Q Consensus 545 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~ 591 (839)
..+..+++|+.|++++|.+..++.....++|+.|++..+
T Consensus 169 --------~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 169 --------VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 207 (605)
T ss_dssp --------GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSE
T ss_pred --------hhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCC
Confidence 128889999999999999888765433456666665543
No 110
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=5.1e-15 Score=160.53 Aligned_cols=138 Identities=14% Similarity=0.153 Sum_probs=89.4
Q ss_pred hcCCCCccEEEeCCCcccc-----cCccccCCCCCcEEEccCCCcCCC-----cc-------cCCCCCCCEEEccCCCCC
Q 003203 427 FTGMSKLRGLALSEMQLLS-----LPPSVHLLSNLQTLCLDQCVVGDI-----SI-------IGNLKKLEILSLVDSDIE 489 (839)
Q Consensus 427 ~~~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~~~-----~~-------~~~l~~L~~L~l~~~~l~ 489 (839)
+..+++|++|+|++|.+.. ++..+..+++|++|++++|.+..+ .. +.++++|++|++++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 3567778888888887763 344566778888888887754432 12 367788888888888777
Q ss_pred C-----CchhhcCCCccCeEecCCCcCCCccCchh----hcCc---------cccCeEEccCCccccccccccccccccc
Q 003203 490 R-----LPNEIGQLTQLRCLDLSFCRNLKVIPPNV----ISKL---------TQLEELYMGNTSVKWEFEGLNIERSNAS 551 (839)
Q Consensus 490 ~-----lp~~i~~l~~L~~L~l~~~~~l~~~p~~~----l~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 551 (839)
. +|..+.++++|++|++++|. ++...... +..+ ++|++|++++|.+... .....
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~-------~~~~l 179 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG-------SMKEW 179 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG-------GHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH-------HHHHH
Confidence 5 66777788888888888876 44322211 2333 7888888888776410 01112
Q ss_pred hhhhccCCCCCEEEEEecccc
Q 003203 552 LQELRHLSQLTTLEIQIQDAM 572 (839)
Q Consensus 552 l~~l~~l~~L~~L~l~~~~~~ 572 (839)
...+..+++|+.|++++|.+.
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~ 200 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIR 200 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCC
T ss_pred HHHHHhCCCcCEEECcCCCCC
Confidence 245667778888888777554
No 111
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.52 E-value=4.1e-14 Score=148.14 Aligned_cols=218 Identities=16% Similarity=0.094 Sum_probs=161.3
Q ss_pred ccceEEecCCCCC-----CCCCCCCCCCccEEeecCCCCCCCCChhhh-cCCCCccEEEeCCCccccc-C----ccccCC
Q 003203 385 NCSAVFLNDIKTG-----VLPEGLEYPQLDFFCMNSKDPFFKMPENFF-TGMSKLRGLALSEMQLLSL-P----PSVHLL 453 (839)
Q Consensus 385 ~~~~l~l~~~~~~-----~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~l-p----~~~~~l 453 (839)
.++.+.+....+. .+.....+++|+.|++++|......|..++ .++++|++|++++|.+... | ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 3566676665542 122223457799999999987666666555 7899999999999998843 2 234578
Q ss_pred CCCcEEEccCCCcCC--CcccCCCCCCCEEEccCCCCCC---Cchh--hcCCCccCeEecCCCcCCCccCch---hhcCc
Q 003203 454 SNLQTLCLDQCVVGD--ISIIGNLKKLEILSLVDSDIER---LPNE--IGQLTQLRCLDLSFCRNLKVIPPN---VISKL 523 (839)
Q Consensus 454 ~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~---lp~~--i~~l~~L~~L~l~~~~~l~~~p~~---~l~~l 523 (839)
++|++|++++|.+.. +..++++++|++|++++|++.. ++.. ++.+++|++|++++|. ++.++.. .++.+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcC
Confidence 999999999999877 3678899999999999998753 3332 4688999999999986 6655542 35778
Q ss_pred cccCeEEccCCccccccccccccccccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCC--CCCCCC
Q 003203 524 TQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWD--WSGKSD 601 (839)
Q Consensus 524 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~~ 601 (839)
++|++|++++|.+....+ ..+..+..+++|++|++++|.+..+|..+. ++|+.|+++.+.... ....++
T Consensus 224 ~~L~~L~Ls~N~l~~~~p--------~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-~~L~~L~Ls~N~l~~~~~~~~l~ 294 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVN--------PSAPRCMWSSALNSLNLSFAGLEQVPKGLP-AKLRVLDLSSNRLNRAPQPDELP 294 (310)
T ss_dssp CCCSSEECTTSCCCCCCC--------SCCSSCCCCTTCCCEECCSSCCCSCCSCCC-SCCSCEECCSCCCCSCCCTTSCC
T ss_pred CCCCEEECCCCCCCccch--------hhHHhccCcCcCCEEECCCCCCCchhhhhc-CCCCEEECCCCcCCCCchhhhCC
Confidence 999999999998763322 112333444799999999999999888775 799999998776433 356678
Q ss_pred CccEEEecccC
Q 003203 602 NTRALKLKLCS 612 (839)
Q Consensus 602 ~l~~L~l~~~~ 612 (839)
+|+.|+++.+.
T Consensus 295 ~L~~L~L~~N~ 305 (310)
T 4glp_A 295 EVDNLTLDGNP 305 (310)
T ss_dssp CCSCEECSSTT
T ss_pred CccEEECcCCC
Confidence 89999988654
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.49 E-value=2.7e-13 Score=151.91 Aligned_cols=184 Identities=18% Similarity=0.235 Sum_probs=141.1
Q ss_pred ccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCC
Q 003203 385 NCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQC 464 (839)
Q Consensus 385 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~ 464 (839)
+++.++++++.+..+|..+ +++|+.|++++|.. ..+| ..+++|++|++++|.++.+|. +.+ +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l-~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNAL-ISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCC-SCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCC-cccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 6888999999998888866 48899999999875 4777 347899999999999999888 665 9999999999
Q ss_pred CcCCCcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcccccccccc
Q 003203 465 VVGDISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLN 544 (839)
Q Consensus 465 ~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 544 (839)
.+..++. .+++|++|++++|.++.+|. .+++|++|++++|. ++.+|. ++ ++|+.|++++|.+. .++..
T Consensus 131 ~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~-~lp~~- 198 (571)
T 3cvr_A 131 QLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLE-SLPAV- 198 (571)
T ss_dssp CCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCS-SCCCC-
T ss_pred cCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCC-chhhH-
Confidence 9888655 78999999999999998887 67899999999986 777887 55 89999999999876 22210
Q ss_pred ccccccchhhh-ccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcc
Q 003203 545 IERSNASLQEL-RHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIY 615 (839)
Q Consensus 545 ~~~~~~~l~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~ 615 (839)
...+ ...+.|+.|++++|.+..+|..++. +++|+.|+++++....
T Consensus 199 -------~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~-------------------l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 199 -------PVRNHHSEETEIFFRCRENRITHIPENILS-------------------LDPTCTIILEDNPLSS 244 (571)
T ss_dssp -------C--------CCEEEECCSSCCCCCCGGGGG-------------------SCTTEEEECCSSSCCH
T ss_pred -------HHhhhcccccceEEecCCCcceecCHHHhc-------------------CCCCCEEEeeCCcCCC
Confidence 0011 2223349999999999988875542 4566666776665443
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.48 E-value=1.4e-13 Score=129.70 Aligned_cols=140 Identities=25% Similarity=0.192 Sum_probs=112.1
Q ss_pred CCCCccEEEeCCCccc--ccCccccCCCCCcEEEccCCCcCCCcccCCCCCCCEEEccCCCCCC-CchhhcCCCccCeEe
Q 003203 429 GMSKLRGLALSEMQLL--SLPPSVHLLSNLQTLCLDQCVVGDISIIGNLKKLEILSLVDSDIER-LPNEIGQLTQLRCLD 505 (839)
Q Consensus 429 ~l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~ 505 (839)
..++|++|++++|.+. .+|..+..+++|++|++++|.+..+..++.+++|++|++++|.++. +|..+.++++|++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 3477899999999888 8888888899999999999988888888889999999999998887 777777799999999
Q ss_pred cCCCcCCCccCc-hhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCCEEEEEeccccCCCcc
Q 003203 506 LSFCRNLKVIPP-NVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKG 577 (839)
Q Consensus 506 l~~~~~l~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~ 577 (839)
+++|. ++.+|. ..++.+++|++|++++|.+....+ .....+..+++|+.|++++|.....|..
T Consensus 102 Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~--------~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLND--------YRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTT--------HHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHH--------HHHHHHHhCccCcEecCCCCChhhcccc
Confidence 99986 777653 348889999999999988752111 0113578889999999999888877753
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=2.4e-13 Score=138.20 Aligned_cols=146 Identities=18% Similarity=0.241 Sum_probs=130.2
Q ss_pred ccccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEcc
Q 003203 383 LKNCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLD 462 (839)
Q Consensus 383 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 462 (839)
+.+++.+.++++.+..+|....+++|+.|++++|.. ..++. +.++++|++|++++|.+..+|.... ++|++|+++
T Consensus 40 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i-~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~ 114 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQI-SDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLD 114 (263)
T ss_dssp HTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCC-CCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECC
T ss_pred cCcCcEEECcCCCcccchHHhhCCCCCEEECCCCcc-CCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEEcc
Confidence 567999999999999999656899999999999874 56665 7899999999999999999886544 999999999
Q ss_pred CCCcCCCcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccc
Q 003203 463 QCVVGDISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVK 537 (839)
Q Consensus 463 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 537 (839)
+|.+..++.++++++|++|++++|+++.+| .+..+++|++|++++|. ++.++. ++.+++|+.|++++|.+.
T Consensus 115 ~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 115 NNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTGG--LTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp SSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCTT--STTCCCCCEEEEEEEEEE
T ss_pred CCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchHH--hccCCCCCEEeCCCCccc
Confidence 999999888999999999999999999987 68999999999999987 666633 899999999999999875
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=1.3e-13 Score=147.49 Aligned_cols=172 Identities=20% Similarity=0.255 Sum_probs=124.9
Q ss_pred ceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhc-CCCCccEEEeCCCcccccC-ccccCCCCCcEEEccCC
Q 003203 387 SAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFT-GMSKLRGLALSEMQLLSLP-PSVHLLSNLQTLCLDQC 464 (839)
Q Consensus 387 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~ 464 (839)
+.+...++.+..+|..+ .+.++.|++++|.. ..++...|. ++++|++|+|++|.+..++ ..+..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l-~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCC-CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCC-CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 46777778888888654 24578888888764 566666666 7888888888888888775 45788888888888888
Q ss_pred CcCCC--cccCCCCCCCEEEccCCCCCCC-chhhcCCCccCeEecCCCcCCCccCchhh---cCccccCeEEccCCcccc
Q 003203 465 VVGDI--SIIGNLKKLEILSLVDSDIERL-PNEIGQLTQLRCLDLSFCRNLKVIPPNVI---SKLTQLEELYMGNTSVKW 538 (839)
Q Consensus 465 ~~~~~--~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~p~~~l---~~l~~L~~L~l~~~~~~~ 538 (839)
.+..+ ..+.++++|++|+|++|.++.+ |..+..+++|++|++++|. ++.+|...+ ..+++|+.|++++|.+..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 87773 4578888888888888888866 5567888888888888875 777777645 568888888888887652
Q ss_pred ccccccccccccchhhhccCCC--CCEEEEEecccc
Q 003203 539 EFEGLNIERSNASLQELRHLSQ--LTTLEIQIQDAM 572 (839)
Q Consensus 539 ~~~~~~~~~~~~~l~~l~~l~~--L~~L~l~~~~~~ 572 (839)
. ....+..++. |+.|++.+|...
T Consensus 178 l-----------~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 L-----------PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp C-----------CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred c-----------CHHHhhhccHhhcceEEecCCCcc
Confidence 1 1234555555 366777776544
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.47 E-value=2.7e-13 Score=133.75 Aligned_cols=148 Identities=16% Similarity=0.278 Sum_probs=121.2
Q ss_pred cEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCc-cccCCCCCcEEEccCCCcCC--CcccCCCCCCCEEEccC
Q 003203 409 DFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPP-SVHLLSNLQTLCLDQCVVGD--ISIIGNLKKLEILSLVD 485 (839)
Q Consensus 409 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~ 485 (839)
+.++++++. +..+|..+ .++|++|++++|.+..+|. .+..+++|++|++++|.+.. +..+.++++|++|+|++
T Consensus 14 ~~v~c~~~~-l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSC-CSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCC-cCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 456666655 46777654 3689999999999998765 78899999999999998887 47899999999999999
Q ss_pred CCCCCCchh-hcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCCEE
Q 003203 486 SDIERLPNE-IGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTL 564 (839)
Q Consensus 486 ~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L 564 (839)
|.++.+|.. +..+++|++|++++|. ++.+++..++.+++|++|++++|.+....+ ..+..+++|+.|
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L~~L 157 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAK-----------GTFSPLRAIQTM 157 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT-----------TTTTTCTTCCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECH-----------HHHhCCCCCCEE
Confidence 999999876 5789999999999986 777766668999999999999998763222 347778899999
Q ss_pred EEEecccc
Q 003203 565 EIQIQDAM 572 (839)
Q Consensus 565 ~l~~~~~~ 572 (839)
++++|...
T Consensus 158 ~L~~N~~~ 165 (220)
T 2v9t_B 158 HLAQNPFI 165 (220)
T ss_dssp ECCSSCEE
T ss_pred EeCCCCcC
Confidence 99988654
No 117
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.47 E-value=8.3e-15 Score=158.82 Aligned_cols=231 Identities=18% Similarity=0.185 Sum_probs=110.8
Q ss_pred CCCCccEEeecCCCCCCCCCh---hhhcCCCCccEEEeCCCccc----ccCccc-------cCCCCCcEEEccCCCcCC-
Q 003203 404 EYPQLDFFCMNSKDPFFKMPE---NFFTGMSKLRGLALSEMQLL----SLPPSV-------HLLSNLQTLCLDQCVVGD- 468 (839)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~----~lp~~~-------~~l~~L~~L~l~~~~~~~- 468 (839)
.+++|+.|++++|......+. ..+.++++|++|+|++|.+. .+|..+ ..+++|++|++++|.+..
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 345555555555543221111 11345555666666554332 222222 455566666666655544
Q ss_pred -----CcccCCCCCCCEEEccCCCCCC-----CchhhcCC---------CccCeEecCCCcCCC--ccCc--hhhcCccc
Q 003203 469 -----ISIIGNLKKLEILSLVDSDIER-----LPNEIGQL---------TQLRCLDLSFCRNLK--VIPP--NVISKLTQ 525 (839)
Q Consensus 469 -----~~~~~~l~~L~~L~l~~~~l~~-----lp~~i~~l---------~~L~~L~l~~~~~l~--~~p~--~~l~~l~~ 525 (839)
+..+.++++|++|++++|.++. ++..+..+ ++|++|++++|. ++ .++. ..+..+++
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHHhCCC
Confidence 1344555566666666665541 22223333 556666666554 32 2221 12445556
Q ss_pred cCeEEccCCccccccccccccccccchh-hhccCCCCCEEEEEecccc-----CCCccccccccceEEEEEcCCCCCCCC
Q 003203 526 LEELYMGNTSVKWEFEGLNIERSNASLQ-ELRHLSQLTTLEIQIQDAM-----ILPKGLFSKKLERYKIYIGDEWDWSGK 599 (839)
Q Consensus 526 L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~~~~ 599 (839)
|++|++++|.+... ....... .+..+++|+.|++++|.+. .++..+ ..
T Consensus 189 L~~L~L~~n~l~~~-------g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l-------------------~~ 242 (386)
T 2ca6_A 189 LHTVKMVQNGIRPE-------GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL-------------------KS 242 (386)
T ss_dssp CCEEECCSSCCCHH-------HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG-------------------GG
T ss_pred cCEEECcCCCCCHh-------HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH-------------------cc
Confidence 66666665554300 0001122 4455556666666655542 122111 12
Q ss_pred CCCccEEEecccCCcch-----HHHHHH--hcccceEEeccccCchh----hccccccCCCCCCCeeeeccCCC
Q 003203 600 SDNTRALKLKLCSSIYL-----DEILMQ--LKGIEHLYLDEVPGIKN----VLYDLEREGFPQLKHLQVQNNPF 662 (839)
Q Consensus 600 ~~~l~~L~l~~~~~~~~-----~~~~~~--l~~L~~L~l~~~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~ 662 (839)
+++|+.|+++.|..... ...+.. +++|+.|++.+|.-... +...+ ...+++|++|++++|+.
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l-~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI-DEKMPDLLFLELNGNRF 315 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH-HHHCTTCCEEECTTSBS
T ss_pred CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH-HhcCCCceEEEccCCcC
Confidence 24455555555443222 122322 78888888888764442 32221 13479999999999863
No 118
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.47 E-value=2.4e-14 Score=153.48 Aligned_cols=108 Identities=14% Similarity=0.174 Sum_probs=53.3
Q ss_pred cCCCCccEEEeCCCcccccC-----ccccCCC-CCcEEEccCCCcCC--CcccCCC-----CCCCEEEccCCCCCCCch-
Q 003203 428 TGMSKLRGLALSEMQLLSLP-----PSVHLLS-NLQTLCLDQCVVGD--ISIIGNL-----KKLEILSLVDSDIERLPN- 493 (839)
Q Consensus 428 ~~l~~L~~L~l~~~~~~~lp-----~~~~~l~-~L~~L~l~~~~~~~--~~~~~~l-----~~L~~L~l~~~~l~~lp~- 493 (839)
...++|++|++++|.+...+ ..+..++ +|++|++++|.+.. +..+..+ ++|++|++++|.++..+.
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 34444666666666555443 3444555 56666666655544 2223332 556666666665553322
Q ss_pred h----hcCC-CccCeEecCCCcCCCccCchhhc----C-ccccCeEEccCCcc
Q 003203 494 E----IGQL-TQLRCLDLSFCRNLKVIPPNVIS----K-LTQLEELYMGNTSV 536 (839)
Q Consensus 494 ~----i~~l-~~L~~L~l~~~~~l~~~p~~~l~----~-l~~L~~L~l~~~~~ 536 (839)
. +..+ ++|++|++++|. ++..+...++ . .++|++|++++|.+
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 150 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDL 150 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred HHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence 1 3333 556666666554 4444432222 2 24566666666554
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=4.6e-13 Score=132.07 Aligned_cols=149 Identities=15% Similarity=0.189 Sum_probs=123.7
Q ss_pred ccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCc--cccCCCCCcEEEccCCCcCCC--cccCCCCCCCEEEc
Q 003203 408 LDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPP--SVHLLSNLQTLCLDQCVVGDI--SIIGNLKKLEILSL 483 (839)
Q Consensus 408 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l 483 (839)
-++++++++. +..+|..+ ...+++|++++|.++.++. .+..+++|++|++++|.+..+ ..++++++|++|++
T Consensus 13 ~~~l~~s~n~-l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 13 GTTVDCSNQK-LNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TTEEECCSSC-CSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEeEeCCCC-cccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 3578888776 46678754 4467899999999998743 478999999999999999884 47999999999999
Q ss_pred cCCCCCCCchh-hcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCC
Q 003203 484 VDSDIERLPNE-IGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLT 562 (839)
Q Consensus 484 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~ 562 (839)
++|.++.+|.. +..+++|++|++++|. ++.+++..++.+++|++|++++|.+....+ ..+..+++|+
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L~ 156 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAP-----------GAFDTLHSLS 156 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCT-----------TTTTTCTTCC
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECH-----------HHhcCCCCCC
Confidence 99999988664 8899999999999987 777765558999999999999998863322 5678899999
Q ss_pred EEEEEecccc
Q 003203 563 TLEIQIQDAM 572 (839)
Q Consensus 563 ~L~l~~~~~~ 572 (839)
.|++++|...
T Consensus 157 ~L~L~~N~l~ 166 (220)
T 2v70_A 157 TLNLLANPFN 166 (220)
T ss_dssp EEECCSCCEE
T ss_pred EEEecCcCCc
Confidence 9999988765
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.46 E-value=3.5e-13 Score=144.20 Aligned_cols=162 Identities=23% Similarity=0.259 Sum_probs=137.5
Q ss_pred ccccccccccccccceEEecCCCCCCCCCCC---CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCc-
Q 003203 373 ILVEWLNNDILKNCSAVFLNDIKTGVLPEGL---EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPP- 448 (839)
Q Consensus 373 ~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~- 448 (839)
.....|. .....++.|++++|.+..++... .+++|+.|++++|.. ..++...|.++++|++|+|++|.+..+|.
T Consensus 29 ~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 106 (361)
T 2xot_A 29 QLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHLHTLDEF 106 (361)
T ss_dssp CCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcC-CccChhhccCCCCCCEEECCCCcCCcCCHH
Confidence 3344443 45667899999999998887653 789999999999874 67777778999999999999999998865
Q ss_pred cccCCCCCcEEEccCCCcCC--CcccCCCCCCCEEEccCCCCCCCchhh----cCCCccCeEecCCCcCCCccCchhhcC
Q 003203 449 SVHLLSNLQTLCLDQCVVGD--ISIIGNLKKLEILSLVDSDIERLPNEI----GQLTQLRCLDLSFCRNLKVIPPNVISK 522 (839)
Q Consensus 449 ~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~i----~~l~~L~~L~l~~~~~l~~~p~~~l~~ 522 (839)
.+..+++|++|++++|.+.. +..+.++++|++|+|++|.++.+|..+ ..+++|++|++++|. ++.+|...+..
T Consensus 107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~ 185 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQK 185 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHH
T ss_pred HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhh
Confidence 68899999999999999987 467999999999999999999999876 679999999999986 88898776888
Q ss_pred ccc--cCeEEccCCccc
Q 003203 523 LTQ--LEELYMGNTSVK 537 (839)
Q Consensus 523 l~~--L~~L~l~~~~~~ 537 (839)
+++ |+.|++.+|.+.
T Consensus 186 l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 186 LPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SCHHHHTTEECCSSCEE
T ss_pred ccHhhcceEEecCCCcc
Confidence 887 489999999875
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.44 E-value=7.9e-13 Score=131.35 Aligned_cols=150 Identities=23% Similarity=0.283 Sum_probs=124.7
Q ss_pred CccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccccc-CccccCCCCCcEEEccCCCcCCC--cccCCCCCCCEEEc
Q 003203 407 QLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSL-PPSVHLLSNLQTLCLDQCVVGDI--SIIGNLKKLEILSL 483 (839)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l 483 (839)
..+.++.+++. ...+|..+ .++|++|++++|.+..+ |..+..+++|++|++++|.+..+ ..+.++++|++|++
T Consensus 20 s~~~v~c~~~~-l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKR-HASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSC-CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCC-cCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 35667776655 57788754 47899999999999977 67789999999999999999884 45789999999999
Q ss_pred cCCCCCCCchh-hcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCC
Q 003203 484 VDSDIERLPNE-IGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLT 562 (839)
Q Consensus 484 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~ 562 (839)
++|.++.+|.. +..+++|++|++++|. ++.+|.. +..+++|++|++++|.+....+ ..+..+++|+
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L~ 162 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLKSIPH-----------GAFDRLSSLT 162 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCCCCCT-----------TTTTTCTTCC
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCCccCH-----------HHHhCCCCCC
Confidence 99999988765 5889999999999986 8889887 7999999999999998762221 4578889999
Q ss_pred EEEEEeccccC
Q 003203 563 TLEIQIQDAMI 573 (839)
Q Consensus 563 ~L~l~~~~~~~ 573 (839)
.|++.+|....
T Consensus 163 ~L~l~~N~~~c 173 (229)
T 3e6j_A 163 HAYLFGNPWDC 173 (229)
T ss_dssp EEECTTSCBCT
T ss_pred EEEeeCCCccC
Confidence 99999887653
No 122
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=5.3e-13 Score=130.69 Aligned_cols=152 Identities=21% Similarity=0.258 Sum_probs=129.5
Q ss_pred ccccccceEEecCCCCCCCCCCC--CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCcc-ccCCCCCc
Q 003203 381 DILKNCSAVFLNDIKTGVLPEGL--EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPS-VHLLSNLQ 457 (839)
Q Consensus 381 ~~~~~~~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~ 457 (839)
....+++.+.++++.+..++... .+++|++|++++|.. ..++...|.++++|++|++++|.+..+|.. +..+++|+
T Consensus 25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLK 103 (208)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc-CccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCC
Confidence 34568999999999998888753 899999999999874 678888889999999999999999988765 68999999
Q ss_pred EEEccCCCcCCC--cccCCCCCCCEEEccCCCCCCCchh-hcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCC
Q 003203 458 TLCLDQCVVGDI--SIIGNLKKLEILSLVDSDIERLPNE-IGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNT 534 (839)
Q Consensus 458 ~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~ 534 (839)
+|++++|.+..+ ..+.++++|++|++++|.++.+|.. +..+++|++|++++|.. .+.+++|+.|+++.|
T Consensus 104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPGIRYLSEWIN 175 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTTTHHHHHHHH
T ss_pred EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCCHHHHHHHHH
Confidence 999999999884 3478999999999999999988775 78899999999999852 345678889988888
Q ss_pred ccccccc
Q 003203 535 SVKWEFE 541 (839)
Q Consensus 535 ~~~~~~~ 541 (839)
.+...++
T Consensus 176 ~~~g~ip 182 (208)
T 2o6s_A 176 KHSGVVR 182 (208)
T ss_dssp HCTTTBB
T ss_pred hCCceee
Confidence 7764444
No 123
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.43 E-value=2.4e-12 Score=139.60 Aligned_cols=301 Identities=14% Similarity=0.062 Sum_probs=178.8
Q ss_pred CccccchHHHHHHHHHHhc----CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhc---c-CCeEEEEEEecCCCHHHHHH
Q 003203 34 YKSFESRKSILCDILDWLT----SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQN---L-FDQVIFVLASSTANVKRIQD 105 (839)
Q Consensus 34 ~~~fvgR~~~~~~l~~~l~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~-f~~~~wv~~~~~~~~~~~~~ 105 (839)
+..|+||+++++++.+++. ....+.+.|+|++|+||||+|+.+++...... . -..++|+++....+...+..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 3679999999999999984 24457899999999999999999998875431 1 12467788777788889999
Q ss_pred HHHHHhhhhccCC--CchHHHHHHHHHHHc-CCcEEEEEeCCCCccc----ccccc---ccCCCC--CCCceEEEEeCch
Q 003203 106 EIADQLCLELCKG--TESERARTLFDRLWK-ENKILVILDDICTSID----LVTVG---IPFGNA--HRGCKILLASRYR 173 (839)
Q Consensus 106 ~i~~~l~~~~~~~--~~~~~~~~~~~~l~~-~~~~LlVlDdv~~~~~----~~~l~---~~l~~~--~~~s~iivTtr~~ 173 (839)
.++.+++...... ...+....+.+.+.. +++.+||+||++.... .+.+. ...... ..+..+|+||+..
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 9999886543322 233334555555533 4688999999986432 12221 111111 4566788888776
Q ss_pred hhh----hhhc-Cc-cceEEccCCCHHHHHHHHHHHhCCC-CCCcchHHHHHHHHHHhC---CchhH-HHHHHHH---hc
Q 003203 174 DIL----VSEM-HS-QYNYCVSVLNKEEAWSLFKKMVGDY-VEDSDLESIAIQVANECG---GLPLA-IVIVARA---LR 239 (839)
Q Consensus 174 ~~~----~~~~-~~-~~~~~l~~L~~~ea~~Lf~~~~~~~-~~~~~~~~~~~~I~~~~~---G~Pla-i~~~~~~---L~ 239 (839)
... .... .. ...+.+++++.++..+++.+.+... ....-.++..+.+++.++ |.|.. +.++... ..
T Consensus 178 ~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~ 257 (387)
T 2v1u_A 178 GFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAE 257 (387)
T ss_dssp TTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 321 0001 11 2478999999999999999886310 001111234677888888 99943 3322222 11
Q ss_pred --CC---ChhHHHHHHHHhhcccccchHHHHhhhhccccccchhHHHHHHHhcc-cCCCCCCCcHHHHHHhhhc----cc
Q 003203 240 --NK---PLSEWKGALLKLRSSAGKLDALVYSSIELSYNYLIDQVLKSAFLLCG-LLKHPYDASVMDLLKHGMG----LG 309 (839)
Q Consensus 240 --~~---~~~~w~~~l~~l~~~~~~~~~~~~~~l~~sy~~L~~~~lk~~fl~~a-~fp~~~~~~~~~li~~w~~----~g 309 (839)
+. +.+.+..++..... ..+.-++..+++++ +..+..++ ++.....+...++.+.... .|
T Consensus 258 ~~~~~~i~~~~v~~a~~~~~~----------~~~~~~~~~l~~~~-~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (387)
T 2v1u_A 258 RRREERVRREHVYSARAEIER----------DRVSEVVRTLPLHA-KLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG 326 (387)
T ss_dssp HTTCSCBCHHHHHHHHHHHHH----------HHHHHHHHSSCHHH-HHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT
T ss_pred HcCCCCcCHHHHHHHHHHHhh----------chHHHHHHcCCHHH-HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC
Confidence 11 55566666555421 13445667788874 55555454 3432233444433332211 11
Q ss_pred cccccccHHHHHHHHHHHHHHHHhcccccCC----CCCCeEEeeeh
Q 003203 310 LFEGIYTMQERRDRVYALVHILKDSCLLLDG----RTEDWFSMHDI 351 (839)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~----~~~~~~~mH~l 351 (839)
. .. .+...+.++++.|...+++... +..+.++.+.+
T Consensus 327 ~-~~-----~~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~~~~~l 366 (387)
T 2v1u_A 327 L-EH-----VTLRRVSGIISELDMLGIVKSRVVSRGRYGKTREVSL 366 (387)
T ss_dssp C-CC-----CCHHHHHHHHHHHHHTTSEEEEEEECGGGCEEEEEEE
T ss_pred C-CC-----CCHHHHHHHHHHHHhCCCeEEEeecCCCCCceeEEEe
Confidence 1 11 1234566788999999999763 22445555443
No 124
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.43 E-value=1.1e-13 Score=148.33 Aligned_cols=156 Identities=12% Similarity=0.173 Sum_probs=77.4
Q ss_pred ccEEeecCCCCCCCCCh----hhhcCCC-CccEEEeCCCccccc-CccccCC-----CCCcEEEccCCCcCCC--c----
Q 003203 408 LDFFCMNSKDPFFKMPE----NFFTGMS-KLRGLALSEMQLLSL-PPSVHLL-----SNLQTLCLDQCVVGDI--S---- 470 (839)
Q Consensus 408 L~~L~l~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~l-p~~~~~l-----~~L~~L~l~~~~~~~~--~---- 470 (839)
|+.|++++|. +...+. ..+.+++ +|++|++++|.+... +..+..+ ++|++|++++|.+... .
T Consensus 24 L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 24 VTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp CCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 6666666655 233433 3445555 566666666666533 3333332 6666666666665541 1
Q ss_pred ccCCC-CCCCEEEccCCCCCCCch-h----hcC-CCccCeEecCCCcCCCc-----cCchhhcCcc-ccCeEEccCCccc
Q 003203 471 IIGNL-KKLEILSLVDSDIERLPN-E----IGQ-LTQLRCLDLSFCRNLKV-----IPPNVISKLT-QLEELYMGNTSVK 537 (839)
Q Consensus 471 ~~~~l-~~L~~L~l~~~~l~~lp~-~----i~~-l~~L~~L~l~~~~~l~~-----~p~~~l~~l~-~L~~L~l~~~~~~ 537 (839)
.+..+ ++|++|++++|.++..+. . +.. .++|++|++++|. ++. ++.. +..++ +|++|++++|.+.
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~-l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQI-LAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHH-HHTSCTTCCEEECTTSCGG
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHH-HhcCCccccEeeecCCCCc
Confidence 13333 566666666666654432 1 222 2466666666654 332 1111 23343 6666666666553
Q ss_pred cccccccccccccchhhhccC-CCCCEEEEEeccccC
Q 003203 538 WEFEGLNIERSNASLQELRHL-SQLTTLEIQIQDAMI 573 (839)
Q Consensus 538 ~~~~~~~~~~~~~~l~~l~~l-~~L~~L~l~~~~~~~ 573 (839)
...+ ......+..+ ++|+.|++++|.+..
T Consensus 181 ~~~~-------~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 181 SKNC-------AELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp GSCH-------HHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred hhhH-------HHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 1110 0111233444 366666666665543
No 125
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.42 E-value=4.7e-12 Score=137.08 Aligned_cols=285 Identities=12% Similarity=0.009 Sum_probs=171.0
Q ss_pred ccccchHHHHHHHHHHhc----CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhcc------CCeEEEEEEecCC-CHHHH
Q 003203 35 KSFESRKSILCDILDWLT----SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNL------FDQVIFVLASSTA-NVKRI 103 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~------f~~~~wv~~~~~~-~~~~~ 103 (839)
..|+||+++++++.+++. ....+.+.|+|++|+||||+|+.+++....... ...++|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 679999999999997775 344578999999999999999999998754311 3357788877777 88888
Q ss_pred HHHHHHHhhhhcc---CCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc---cccccccCCCCCCCceEEEEeCchhhh-
Q 003203 104 QDEIADQLCLELC---KGTESERARTLFDRLWKENKILVILDDICTSID---LVTVGIPFGNAHRGCKILLASRYRDIL- 176 (839)
Q Consensus 104 ~~~i~~~l~~~~~---~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~---~~~l~~~l~~~~~~s~iivTtr~~~~~- 176 (839)
+.+++.++..... .....+....+.+.+. .++.+||+||++.... .+.+...+.....+..+|+||+.....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR-NIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS-SSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc-cCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHh
Confidence 8898888732211 1222344555555554 3444999999986421 122011111111678899999876321
Q ss_pred ---hh-hcCccceEEccCCCHHHHHHHHHHHhCC-CCCCcchHHHHHHHHHHhC---Cchh-HHHHHHHHh--c-C--C-
Q 003203 177 ---VS-EMHSQYNYCVSVLNKEEAWSLFKKMVGD-YVEDSDLESIAIQVANECG---GLPL-AIVIVARAL--R-N--K- 241 (839)
Q Consensus 177 ---~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~-~~~~~~~~~~~~~I~~~~~---G~Pl-ai~~~~~~L--~-~--~- 241 (839)
.. .......+++++++.++..+++..++.. .....-.++..+.|++.++ |.|. ++..+-... . + .
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i 258 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGII 258 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCC
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCcc
Confidence 10 0111238999999999999999988631 0011111345677888888 9887 433333222 2 1 1
Q ss_pred ChhHHHHHHHHhhcccccchHHHHhhhhccccccchhHHHHHHHhcccCCCCCCCcHH-HHHHhhhccccccccccHHHH
Q 003203 242 PLSEWKGALLKLRSSAGKLDALVYSSIELSYNYLIDQVLKSAFLLCGLLKHPYDASVM-DLLKHGMGLGLFEGIYTMQER 320 (839)
Q Consensus 242 ~~~~w~~~l~~l~~~~~~~~~~~~~~l~~sy~~L~~~~lk~~fl~~a~fp~~~~~~~~-~li~~w~~~g~~~~~~~~~~~ 320 (839)
+.+.+..+++.... ..+.-++..|++++ +..+..++. .... -+.. ......-..|. .. ..
T Consensus 259 ~~~~v~~~~~~~~~----------~~~~~~~~~l~~~~-~~~l~al~~-~~~~-~~~~~~~~~~~~~~g~-~~-----~~ 319 (384)
T 2qby_B 259 RKEHVDKAIVDYEQ----------ERLIEAVKALPFHY-KLALRSLIE-SEDV-MSAHKMYTDLCNKFKQ-KP-----LS 319 (384)
T ss_dssp CHHHHHHHHHHHHH----------HHHHHHHHSSCHHH-HHHHHHHHT-CCBH-HHHHHHHHHHHHHTTC-CC-----CC
T ss_pred CHHHHHHHHHHHhc----------chHHHHHHcCCHHH-HHHHHHHHH-hccc-ChHHHHHHHHHHHcCC-CC-----CC
Confidence 56667766665421 23455667788774 555555554 1110 1111 11111111121 11 12
Q ss_pred HHHHHHHHHHHHhcccccC
Q 003203 321 RDRVYALVHILKDSCLLLD 339 (839)
Q Consensus 321 ~~~~~~~l~~L~~~~ll~~ 339 (839)
...+.++++.|.+.+++..
T Consensus 320 ~~~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 320 YRRFSDIISELDMFGIVKI 338 (384)
T ss_dssp HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHhCCCEEE
Confidence 2456678899999999975
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.41 E-value=1.6e-12 Score=145.70 Aligned_cols=159 Identities=18% Similarity=0.200 Sum_probs=132.9
Q ss_pred ccccceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEcc
Q 003203 383 LKNCSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLD 462 (839)
Q Consensus 383 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 462 (839)
..+++.+++++|.+..+| ..+++|++|++++|.. ..+|. +.+ +|++|++++|.++.+|. .+++|++|+++
T Consensus 79 ~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l-~~ip~--l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 148 (571)
T 3cvr_A 79 PPQITVLEITQNALISLP--ELPASLEYLDACDNRL-STLPE--LPA--SLKHLDVDNNQLTMLPE---LPALLEYINAD 148 (571)
T ss_dssp CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCC-SCCCC--CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCC-CCcch--hhc--CCCEEECCCCcCCCCCC---cCccccEEeCC
Confidence 467999999999999999 4578999999999975 45777 344 99999999999999988 68999999999
Q ss_pred CCCcCCCcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCcccc-------CeEEccCCc
Q 003203 463 QCVVGDISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQL-------EELYMGNTS 535 (839)
Q Consensus 463 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L-------~~L~l~~~~ 535 (839)
+|.+..++. .+++|++|++++|.++.+|. +. ++|++|++++|. ++.+|. +.. +| +.|++++|.
T Consensus 149 ~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 149 NNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--VPV--RNHHSEETEIFFRCRENR 218 (571)
T ss_dssp SSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC----------CCEEEECCSSC
T ss_pred CCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--HHH--hhhcccccceEEecCCCc
Confidence 999988655 68899999999999999998 66 899999999986 788887 444 67 999999998
Q ss_pred cccccccccccccccchhhhccCCCCCEEEEEeccccC
Q 003203 536 VKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMI 573 (839)
Q Consensus 536 ~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~ 573 (839)
+.. ....+..+++|+.|++++|.+..
T Consensus 219 l~~------------lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 219 ITH------------IPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CCC------------CCGGGGGSCTTEEEECCSSSCCH
T ss_pred cee------------cCHHHhcCCCCCEEEeeCCcCCC
Confidence 762 23456679999999999998764
No 127
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=4.6e-12 Score=137.35 Aligned_cols=301 Identities=14% Similarity=0.090 Sum_probs=174.4
Q ss_pred CccccchHHHHHHHHHHhc----CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhcc-CCeEEEEEEecCCCHHHHHHHHH
Q 003203 34 YKSFESRKSILCDILDWLT----SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNL-FDQVIFVLASSTANVKRIQDEIA 108 (839)
Q Consensus 34 ~~~fvgR~~~~~~l~~~l~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~ 108 (839)
+..|+||+++++++.+++. ....+.+.|+|++|+||||||+.+++....... -..++|+++....+...+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999987 445678999999999999999999998764421 22467888777777788888888
Q ss_pred HHhhhhccCC--CchHHHHHHHHHHHc-CCcEEEEEeCCCCcc------ccccccccCCC-CCCCceEEEEeCchhhhhh
Q 003203 109 DQLCLELCKG--TESERARTLFDRLWK-ENKILVILDDICTSI------DLVTVGIPFGN-AHRGCKILLASRYRDILVS 178 (839)
Q Consensus 109 ~~l~~~~~~~--~~~~~~~~~~~~l~~-~~~~LlVlDdv~~~~------~~~~l~~~l~~-~~~~s~iivTtr~~~~~~~ 178 (839)
.+++...... ...+....+.+.+.. +++.+||+|+++... .+..+...+.. ...+..+|+||+.......
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 7775433211 233334445555543 358999999997532 22222211111 2345677888886643210
Q ss_pred h------cCccceEEccCCCHHHHHHHHHHHhCCCC-CCcchHHHHHHHHHHhC---CchhHHHHHHH-Hhc-----CC-
Q 003203 179 E------MHSQYNYCVSVLNKEEAWSLFKKMVGDYV-EDSDLESIAIQVANECG---GLPLAIVIVAR-ALR-----NK- 241 (839)
Q Consensus 179 ~------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~-~~~~~~~~~~~I~~~~~---G~Plai~~~~~-~L~-----~~- 241 (839)
. ......+++++++.++..+++.+.+.... ...-..++.+.+++.++ |.|..+..+.. ... +.
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~ 258 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDT 258 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 0 01125899999999999999998763111 11222455677888887 99984333322 211 11
Q ss_pred --ChhHHHHHHHHhhcccccchHHHHhhhhccccccchhHHHHHHHhcccCCC-C-CCCcHHHHHHhhh----ccccccc
Q 003203 242 --PLSEWKGALLKLRSSAGKLDALVYSSIELSYNYLIDQVLKSAFLLCGLLKH-P-YDASVMDLLKHGM----GLGLFEG 313 (839)
Q Consensus 242 --~~~~w~~~l~~l~~~~~~~~~~~~~~l~~sy~~L~~~~lk~~fl~~a~fp~-~-~~~~~~~li~~w~----~~g~~~~ 313 (839)
+.+.++.++.... ...+.-++..+++.+ +..+..++...+ + ..+...++.+... ..|. ..
T Consensus 259 ~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~-~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~-~~ 326 (386)
T 2qby_A 259 KVKEEYVYMAKEEIE----------RDRVRDIILTLPFHS-KLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGV-EA 326 (386)
T ss_dssp SCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHH-HHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTC-CC
T ss_pred ccCHHHHHHHHHHHh----------hchHHHHHHcCCHHH-HHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCC-CC
Confidence 4555555554432 123445566777764 555555553221 1 1222332222111 0111 10
Q ss_pred cccHHHHHHHHHHHHHHHHhcccccCC----CCCCeEEeeeh
Q 003203 314 IYTMQERRDRVYALVHILKDSCLLLDG----RTEDWFSMHDI 351 (839)
Q Consensus 314 ~~~~~~~~~~~~~~l~~L~~~~ll~~~----~~~~~~~mH~l 351 (839)
. ....+..+++.|.+.+++... +..+.|+.+.+
T Consensus 327 ~-----~~~~~~~~l~~L~~~gli~~~~~~~~~~g~y~~~~l 363 (386)
T 2qby_A 327 V-----TQRRVSDIINELDMVGILTAKVVNRGRYGKTKEIGL 363 (386)
T ss_dssp C-----CHHHHHHHHHHHHHHTSEEEEECCCTTSCCCEEEEE
T ss_pred C-----CHHHHHHHHHHHHhCCCEEEEeecCCCCCCeEEEEe
Confidence 0 123456678899999998652 22344555533
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=6e-13 Score=122.51 Aligned_cols=129 Identities=23% Similarity=0.203 Sum_probs=94.9
Q ss_pred CCCccEEEeCCCccc--ccCccccCCCCCcEEEccCCCcCCCcccCCCCCCCEEEccCCCCCC-CchhhcCCCccCeEec
Q 003203 430 MSKLRGLALSEMQLL--SLPPSVHLLSNLQTLCLDQCVVGDISIIGNLKKLEILSLVDSDIER-LPNEIGQLTQLRCLDL 506 (839)
Q Consensus 430 l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l 506 (839)
.++|+.|++++|.+. .+|..++.+++|++|++++|.+..+..++++++|++|++++|.++. +|..++.+++|++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 467888888888887 7787778888888888888887777778888888888888888886 6777777888888888
Q ss_pred CCCcCCCccCc-hhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCCEEEEE
Q 003203 507 SFCRNLKVIPP-NVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQ 567 (839)
Q Consensus 507 ~~~~~l~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~ 567 (839)
++|. ++.++. ..++.+++|++|++++|.+....+ .....+..+++|+.|+++
T Consensus 96 s~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--------~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLND--------YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTT--------HHHHHHHHCTTCCEETTB
T ss_pred CCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHH--------HHHHHHHHCCCcccccCC
Confidence 8876 666541 337888888888888887642110 001346777788877654
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.37 E-value=4.6e-15 Score=167.42 Aligned_cols=182 Identities=19% Similarity=0.160 Sum_probs=132.7
Q ss_pred ccccceEEecCCCCCCCCCCC-CCCCccEEeecCCCC------------CCCCChhhhcCCCCccEEE-eCCCcccccCc
Q 003203 383 LKNCSAVFLNDIKTGVLPEGL-EYPQLDFFCMNSKDP------------FFKMPENFFTGMSKLRGLA-LSEMQLLSLPP 448 (839)
Q Consensus 383 ~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~lp~ 448 (839)
.+.++++.+++|.+..+|..+ .+++|+.|+++++.. ....++..++.+++|+.|+ ++.+.+..++.
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~ 427 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh
Confidence 345667778888877777766 677888887755420 1223344456677777777 45444332221
Q ss_pred ------cccC--CCCCcEEEccCCCcCCCcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhh
Q 003203 449 ------SVHL--LSNLQTLCLDQCVVGDISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVI 520 (839)
Q Consensus 449 ------~~~~--l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l 520 (839)
.+.. ...|++|++++|.+..++.++++++|++|++++|.++.+|..++++++|++|++++|. ++.+| . +
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~-l 504 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-G-V 504 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G-G
T ss_pred hhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-c-c
Confidence 1111 1258899999998888766899999999999999999999999999999999999886 77777 4 8
Q ss_pred cCccccCeEEccCCccccccccccccccccchhhhccCCCCCEEEEEeccccCCCcc
Q 003203 521 SKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKG 577 (839)
Q Consensus 521 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~ 577 (839)
+++++|++|++++|.+.... .+..++.+++|+.|++++|.+...|+.
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~~----------~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQSA----------AIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp TTCSSCCEEECCSSCCCSSS----------TTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCCCcEEECCCCCCCCCC----------CcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 89999999999998875221 146688899999999999988877654
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=1.3e-12 Score=124.09 Aligned_cols=134 Identities=16% Similarity=0.169 Sum_probs=70.9
Q ss_pred cCCCCccEEEeCCCcccccCccccCCC-CCcEEEccCCCcCCCcccCCCCCCCEEEccCCCCCCCchhh-cCCCccCeEe
Q 003203 428 TGMSKLRGLALSEMQLLSLPPSVHLLS-NLQTLCLDQCVVGDISIIGNLKKLEILSLVDSDIERLPNEI-GQLTQLRCLD 505 (839)
Q Consensus 428 ~~l~~L~~L~l~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~ 505 (839)
..+.+|++|++++|.+..+|. +..+. +|++|++++|.+..++.++++++|++|++++|.++.+|..+ ..+++|++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 345555666666665555543 33333 56666666665555555556666666666666666555443 5566666666
Q ss_pred cCCCcCCCccCc-hhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCCEEEEEeccc
Q 003203 506 LSFCRNLKVIPP-NVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDA 571 (839)
Q Consensus 506 l~~~~~l~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 571 (839)
+++|. ++.+|. ..++.+++|++|++++|.+..... .....+..+++|+.|+++.+..
T Consensus 95 L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~--------~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 95 LTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKH--------YRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTT--------HHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHh--------HHHHHHHHCCccceeCCCcCCH
Confidence 66654 455553 125556666666666665431100 0011245566666666655543
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.36 E-value=1.7e-12 Score=122.19 Aligned_cols=128 Identities=20% Similarity=0.231 Sum_probs=69.7
Q ss_pred CCccEEeecCCCCC-CCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCCCcCC-C-cccCCCCCCCEEE
Q 003203 406 PQLDFFCMNSKDPF-FKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGD-I-SIIGNLKKLEILS 482 (839)
Q Consensus 406 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~ 482 (839)
++|+.|++++|... ..+|.. +..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. + ..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34555555554432 134332 34555566666666655555 455556666666666665555 3 2233466666666
Q ss_pred ccCCCCCCCc--hhhcCCCccCeEecCCCcCCCccCc---hhhcCccccCeEEccCCcc
Q 003203 483 LVDSDIERLP--NEIGQLTQLRCLDLSFCRNLKVIPP---NVISKLTQLEELYMGNTSV 536 (839)
Q Consensus 483 l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~p~---~~l~~l~~L~~L~l~~~~~ 536 (839)
+++|.++.+| ..+..+++|++|++++|. +..+|. ..+..+++|++|++++|..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 6666666554 455566666666666654 444544 2355666666666666554
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=9.2e-13 Score=121.27 Aligned_cols=124 Identities=22% Similarity=0.269 Sum_probs=80.1
Q ss_pred CCccEEeecCCCCC-CCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCCCcCC-C-cccCCCCCCCEEE
Q 003203 406 PQLDFFCMNSKDPF-FKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGD-I-SIIGNLKKLEILS 482 (839)
Q Consensus 406 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~ 482 (839)
++|+.|++++|... ..+|. .+..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. + ..++++++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555432 24443 335667777777777777666 566677777777777777666 3 3344577777777
Q ss_pred ccCCCCCCCc--hhhcCCCccCeEecCCCcCCCccCc---hhhcCccccCeEEcc
Q 003203 483 LVDSDIERLP--NEIGQLTQLRCLDLSFCRNLKVIPP---NVISKLTQLEELYMG 532 (839)
Q Consensus 483 l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~p~---~~l~~l~~L~~L~l~ 532 (839)
+++|.++.+| ..++.+++|++|++++|. ++.+|. ..++.+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 7777777654 667777777777777765 566655 346777777777664
No 133
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.36 E-value=9.6e-12 Score=123.46 Aligned_cols=191 Identities=12% Similarity=0.075 Sum_probs=122.4
Q ss_pred cCCCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHH
Q 003203 29 RSNQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIA 108 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 108 (839)
..|.....|+||++.++++.+++.....+.+.|+|++|+|||++|+.+++.......-...+.++.+.......+...+.
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIK 90 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHH
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHH
Confidence 44566678999999999999999877666699999999999999999998875332112234444433333332222221
Q ss_pred HHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCchhhh-hhhcCccce
Q 003203 109 DQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRYRDIL-VSEMHSQYN 185 (839)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~~~~-~~~~~~~~~ 185 (839)
...... ....+++.+||+||++.. ...+.+...+.....+.++|+||+..... .........
T Consensus 91 ~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~ 155 (226)
T 2chg_A 91 EFARTA---------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (226)
T ss_dssp HHHTSC---------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHhccc---------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCce
Confidence 111000 011257899999999865 23333433333344577888888876432 111223348
Q ss_pred EEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHH
Q 003203 186 YCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVA 235 (839)
Q Consensus 186 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 235 (839)
+++.+++.++..+++.+.+...... -.++..+.|++.++|.|..+..+.
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 156 FRFKPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999999887321111 124557789999999998655443
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=1.3e-12 Score=152.19 Aligned_cols=156 Identities=19% Similarity=0.255 Sum_probs=101.5
Q ss_pred cccceEEecCCCCCCCCCCC-CCCCccEEeecCCCC---CCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEE
Q 003203 384 KNCSAVFLNDIKTGVLPEGL-EYPQLDFFCMNSKDP---FFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTL 459 (839)
Q Consensus 384 ~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L 459 (839)
..++++.+..+.+...+... ....|+.+.+..... ...++...+..+.+|++|+|++|.+..+|..+..+++|++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL 252 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence 34778888878776666443 444444444433211 11355667789999999999999999999999999999999
Q ss_pred EccCCCcCC-CcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcccc
Q 003203 460 CLDQCVVGD-ISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKW 538 (839)
Q Consensus 460 ~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~ 538 (839)
+|++|.+.. |..+++|++|++|+|++|.++.+|..+++|++|++|++++|. ++.+|.. ++++++|++|+|++|.+..
T Consensus 253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSCCCS
T ss_pred EeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCccCC
Confidence 999999888 567999999999999999999999999999999999999986 7899987 8999999999999999874
Q ss_pred ccc
Q 003203 539 EFE 541 (839)
Q Consensus 539 ~~~ 541 (839)
.++
T Consensus 331 ~~p 333 (727)
T 4b8c_D 331 QFL 333 (727)
T ss_dssp HHH
T ss_pred CCh
Confidence 443
No 135
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.34 E-value=1.2e-11 Score=124.76 Aligned_cols=202 Identities=13% Similarity=0.141 Sum_probs=122.6
Q ss_pred cCCCCCccccchHHHHHHHHHHhcCCC-eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHH
Q 003203 29 RSNQGYKSFESRKSILCDILDWLTSPN-VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEI 107 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 107 (839)
..|.....|+||+++++.+..++..++ .+.+.|+|++|+||||+|+.+++.......+.. ......... ..+
T Consensus 17 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~ 89 (250)
T 1njg_A 17 WRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDNC-REI 89 (250)
T ss_dssp TCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHHH-HHH
T ss_pred cCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHHH-HHH
Confidence 345556789999999999999998543 358899999999999999999988754321100 000000000 000
Q ss_pred HHHh-----hhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCchhhh
Q 003203 108 ADQL-----CLELCKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRYRDIL 176 (839)
Q Consensus 108 ~~~l-----~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~~~~ 176 (839)
.... ..........+....+.+.+. .+++.+||+||++.. ..++.+...+.....+.++|+||+.....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 90 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp HTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred hccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 0000 000000011112222222221 246799999999764 34444544444445678888888765432
Q ss_pred -hhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHHHHh
Q 003203 177 -VSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVARAL 238 (839)
Q Consensus 177 -~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L 238 (839)
.........+++++++.++..+++.+.+...... -.++..+.|++.++|.|..+..+...+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA-HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1112234689999999999999999887332211 124557899999999999888776544
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=9.2e-12 Score=119.74 Aligned_cols=123 Identities=20% Similarity=0.298 Sum_probs=89.4
Q ss_pred EEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCCCcCCC--cccCCCCCCCEEEccCCC
Q 003203 410 FFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGDI--SIIGNLKKLEILSLVDSD 487 (839)
Q Consensus 410 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~ 487 (839)
+++++++. +..+|..+ .++|++|++++|.++.+|..+..+++|++|++++|.+..+ ..+.++++|++|++++|.
T Consensus 14 ~l~~~~~~-l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKG-LKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSC-CSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCC-CCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 34444443 34455433 2467788888888887777778888888888888877773 457788888888888888
Q ss_pred CCCCch-hhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccc
Q 003203 488 IERLPN-EIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVK 537 (839)
Q Consensus 488 l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 537 (839)
++.+|. .+..+++|++|++++|. ++.+|...+..+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 887754 57788888888888876 77777766778888888888887764
No 137
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.32 E-value=9.2e-11 Score=127.15 Aligned_cols=287 Identities=15% Similarity=0.097 Sum_probs=172.5
Q ss_pred ccccchHHHHHHHHHHhcC----CCee--EEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHH
Q 003203 35 KSFESRKSILCDILDWLTS----PNVN--MIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIA 108 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~~----~~~~--~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 108 (839)
..|+||+++++++.+++.. .... .+.|+|++|+||||+|+.+++...... -..++|++++...+...+...++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHH
Confidence 6799999999999999863 3333 899999999999999999998875321 12467777777777888999998
Q ss_pred HHhhhhccCC--CchHHHHHHHHHHH-cCCcEEEEEeCCCCc--cccccccccCCCCC----CCceEEEEeCchhhhhhh
Q 003203 109 DQLCLELCKG--TESERARTLFDRLW-KENKILVILDDICTS--IDLVTVGIPFGNAH----RGCKILLASRYRDILVSE 179 (839)
Q Consensus 109 ~~l~~~~~~~--~~~~~~~~~~~~l~-~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~----~~s~iivTtr~~~~~~~~ 179 (839)
..++...... ...+....+...+. .+++.+||+||++.. .....+...+.... .+..+|++|+...... .
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~-~ 174 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN-N 174 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH-T
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH-H
Confidence 8886543221 22333334444443 256899999999864 23333333332211 4677888888764322 1
Q ss_pred cC-------ccceEEccCCCHHHHHHHHHHHhCCCC-CCcchHHHHHHHHHHh---------CCchhHHHHHHHHhc---
Q 003203 180 MH-------SQYNYCVSVLNKEEAWSLFKKMVGDYV-EDSDLESIAIQVANEC---------GGLPLAIVIVARALR--- 239 (839)
Q Consensus 180 ~~-------~~~~~~l~~L~~~ea~~Lf~~~~~~~~-~~~~~~~~~~~I~~~~---------~G~Plai~~~~~~L~--- 239 (839)
.. ....+.+++++.++..+++...+.... ...-.++..+.|++.+ +|.|..+..+.....
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHH
Confidence 11 123699999999999999998873200 1112245678899999 788755444332211
Q ss_pred ---CC---ChhHHHHHHHHhhcccccchHHHHhhhhccccccchhHHHHHHHhcccCC---CCCCCcHHHHHHhhhc---
Q 003203 240 ---NK---PLSEWKGALLKLRSSAGKLDALVYSSIELSYNYLIDQVLKSAFLLCGLLK---HPYDASVMDLLKHGMG--- 307 (839)
Q Consensus 240 ---~~---~~~~w~~~l~~l~~~~~~~~~~~~~~l~~sy~~L~~~~lk~~fl~~a~fp---~~~~~~~~~li~~w~~--- 307 (839)
+. +.+....+...... ..+.-.+..|+.++ +.++..++.+. .+..+...++...+..
T Consensus 255 ~~~~~~~i~~~~v~~~~~~~~~----------~~~~~~l~~l~~~~-~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (389)
T 1fnn_A 255 QQNGRKHIAPEDVRKSSKEVLF----------GISEEVLIGLPLHE-KLFLLAIVRSLKISHTPYITFGDAEESYKIVCE 323 (389)
T ss_dssp HHTTCSSCCHHHHHHHHHHHSC----------CCCHHHHHHSCHHH-HHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHH
T ss_pred HHhCCCCcCHHHHHHHHHHHhh----------hhHHHHHHcCCHHH-HHHHHHHHHHHhhccCCCccHHHHHHHHHHHHH
Confidence 11 23333333333211 12233345677763 66665555443 2224444444443321
Q ss_pred -cccccccccHHHHHHHHHHHHHHHHhcccccCC
Q 003203 308 -LGLFEGIYTMQERRDRVYALVHILKDSCLLLDG 340 (839)
Q Consensus 308 -~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 340 (839)
.|... . ....+..+++.|.+.+++...
T Consensus 324 ~~~~~~-~-----~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 324 EYGERP-R-----VHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HTTCCC-C-----CHHHHHHHHHHHHHTTSSEEE
T ss_pred HcCCCC-C-----CHHHHHHHHHHHHhCCCeEEe
Confidence 11110 0 124566789999999999763
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.31 E-value=6.5e-12 Score=120.88 Aligned_cols=104 Identities=19% Similarity=0.270 Sum_probs=48.5
Q ss_pred CccEEEeCCCcccccCcc--ccCCCCCcEEEccCCCcCC--CcccCCCCCCCEEEccCCCCCCCchh-hcCCCccCeEec
Q 003203 432 KLRGLALSEMQLLSLPPS--VHLLSNLQTLCLDQCVVGD--ISIIGNLKKLEILSLVDSDIERLPNE-IGQLTQLRCLDL 506 (839)
Q Consensus 432 ~L~~L~l~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 506 (839)
+|++|++++|.+..++.. ++.+++|++|++++|.+.. +..++++++|++|++++|+++.++.. +..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 455555555555544432 4455555555555554444 23444555555555555554444322 444455555555
Q ss_pred CCCcCCCccCchhhcCccccCeEEccCCcc
Q 003203 507 SFCRNLKVIPPNVISKLTQLEELYMGNTSV 536 (839)
Q Consensus 507 ~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~ 536 (839)
++|. ++.+++..++.+++|++|++++|.+
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 110 YDNQ-ISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CSSC-CCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCCc-CCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 5443 3333222244444555555444443
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=1.5e-12 Score=123.55 Aligned_cols=134 Identities=16% Similarity=0.141 Sum_probs=105.8
Q ss_pred CCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCCCcCCC-cc-cCCCCC
Q 003203 400 PEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGDI-SI-IGNLKK 477 (839)
Q Consensus 400 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~-~~-~~~l~~ 477 (839)
+....+++|+.|++++|.. ..++. +....++|++|++++|.++.+ +.++.+++|++|++++|.+..+ +. ++.+++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l-~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKI-PVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp CEEECTTSCEEEECTTSCC-CSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred HhcCCcCCceEEEeeCCCC-chhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3344677888888888864 45543 333344899999999998887 6788899999999999988874 33 488999
Q ss_pred CCEEEccCCCCCCCch--hhcCCCccCeEecCCCcCCCccCch---hhcCccccCeEEccCCccc
Q 003203 478 LEILSLVDSDIERLPN--EIGQLTQLRCLDLSFCRNLKVIPPN---VISKLTQLEELYMGNTSVK 537 (839)
Q Consensus 478 L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~p~~---~l~~l~~L~~L~l~~~~~~ 537 (839)
|++|++++|.++.+|. .+..+++|++|++++|. +..+|.. .++.+++|+.|+++.|...
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999999988887 78899999999999987 6677764 4788999999999888754
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.27 E-value=2.2e-11 Score=117.14 Aligned_cols=125 Identities=27% Similarity=0.351 Sum_probs=107.8
Q ss_pred cEEEeCCCcccccCccccCCCCCcEEEccCCCcCC-CcccCCCCCCCEEEccCCCCCCCch-hhcCCCccCeEecCCCcC
Q 003203 434 RGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGD-ISIIGNLKKLEILSLVDSDIERLPN-EIGQLTQLRCLDLSFCRN 511 (839)
Q Consensus 434 ~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 511 (839)
++++++++.+..+|..+. ++|++|++++|.+.. +..+.++++|++|++++|.++.++. .+..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~- 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR- 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-
Confidence 689999999999998764 689999999999988 4789999999999999999998865 58999999999999987
Q ss_pred CCccCchhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCCEEEEEecccc
Q 003203 512 LKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAM 572 (839)
Q Consensus 512 l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 572 (839)
++.+++..++.+++|++|++++|.+....+ ..+..+++|+.|++++|...
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPE-----------GAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCT-----------TTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeCh-----------hhhhcCccccEEEeCCCCee
Confidence 888887779999999999999998763222 34678899999999988654
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.27 E-value=2.3e-11 Score=116.97 Aligned_cols=124 Identities=21% Similarity=0.286 Sum_probs=107.9
Q ss_pred ceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCCh-hhhcCCCCccEEEeCCCccccc-CccccCCCCCcEEEccCC
Q 003203 387 SAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPE-NFFTGMSKLRGLALSEMQLLSL-PPSVHLLSNLQTLCLDQC 464 (839)
Q Consensus 387 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~ 464 (839)
+.+.++++.+..+|..+. .+++.|++++|.. ..++. .+|.++++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCC-CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcC-CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 678999999999998653 3899999999975 55554 4679999999999999999977 778999999999999999
Q ss_pred CcCCC--cccCCCCCCCEEEccCCCCCCC-chhhcCCCccCeEecCCCcCC
Q 003203 465 VVGDI--SIIGNLKKLEILSLVDSDIERL-PNEIGQLTQLRCLDLSFCRNL 512 (839)
Q Consensus 465 ~~~~~--~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l 512 (839)
.+..+ ..+.++++|++|++++|+++.+ |..+..+++|++|++++|...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 99883 5589999999999999999966 778999999999999998743
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.25 E-value=2.5e-12 Score=149.92 Aligned_cols=144 Identities=19% Similarity=0.222 Sum_probs=106.7
Q ss_pred ecCCCCCCCCCCC-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCCCcCC-
Q 003203 391 LNDIKTGVLPEGL-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGD- 468 (839)
Q Consensus 391 l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~- 468 (839)
+..+.+...|..+ .+++|+.|++++|.. ..+|..++ ++++|++|+|++|.++.+|..+++|++|++|+|++|.+..
T Consensus 208 ~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l 285 (727)
T 4b8c_D 208 DIENRMVMPKDSKYDDQLWHALDLSNLQI-FNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL 285 (727)
T ss_dssp --------------CCCCCCEEECTTSCC-SCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSC
T ss_pred ccccceecChhhhccCCCCcEEECCCCCC-CCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCcc
Confidence 3334444334444 788999999998885 57888775 7999999999999999999999999999999999998887
Q ss_pred CcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccc-cCeEEccCCccc
Q 003203 469 ISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQ-LEELYMGNTSVK 537 (839)
Q Consensus 469 ~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~-L~~L~l~~~~~~ 537 (839)
|..+++|++|++|+|++|.++.+|..+++|++|++|++++|. +...++..+..+.. +..|++.+|.+.
T Consensus 286 p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred ChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCccc
Confidence 577899999999999999999999999999999999999987 44443333543322 223566666654
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.21 E-value=1.1e-10 Score=110.69 Aligned_cols=106 Identities=31% Similarity=0.497 Sum_probs=55.2
Q ss_pred CCccEEEeCCCcccccCc-cccCCCCCcEEEccCCCcCCC--cccCCCCCCCEEEccCCCCCCCchh-hcCCCccCeEec
Q 003203 431 SKLRGLALSEMQLLSLPP-SVHLLSNLQTLCLDQCVVGDI--SIIGNLKKLEILSLVDSDIERLPNE-IGQLTQLRCLDL 506 (839)
Q Consensus 431 ~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 506 (839)
++|++|++++|.+..+|. .++.+++|++|++++|.+..+ ..++++++|++|++++|.++.+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 345555555555554433 234455555555555555442 2245555555555555555555443 355555666666
Q ss_pred CCCcCCCccCchhhcCccccCeEEccCCccc
Q 003203 507 SFCRNLKVIPPNVISKLTQLEELYMGNTSVK 537 (839)
Q Consensus 507 ~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 537 (839)
++|. ++.+|...+..+++|++|++++|.+.
T Consensus 108 ~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 108 DTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 5553 45555544455566666666555543
No 144
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.21 E-value=4.1e-11 Score=135.15 Aligned_cols=122 Identities=20% Similarity=0.187 Sum_probs=94.7
Q ss_pred CccEEEeCCCcccccCccccCCCCCcEEEccCCCcCC-CcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCc
Q 003203 432 KLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGD-ISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCR 510 (839)
Q Consensus 432 ~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 510 (839)
.|++|++++|.++.+|. ++.+++|++|++++|.+.. |..++++++|++|+|++|.++.+| .++++++|++|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 58888888888888886 8888888888888888877 567888888888888888888888 78888888888888876
Q ss_pred CCCcc--CchhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCCEEE
Q 003203 511 NLKVI--PPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLE 565 (839)
Q Consensus 511 ~l~~~--p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~ 565 (839)
++.+ |.. ++.+++|+.|++++|.+....+ ....-+..+++|+.|+
T Consensus 520 -l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~--------~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 520 -LQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG--------IQERLAEMLPSVSSIL 566 (567)
T ss_dssp -CCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS--------CTTHHHHHCTTCSEEE
T ss_pred -CCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc--------HHHHHHHHCcccCccC
Confidence 6666 554 8888888888888888753322 1112244577888775
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.20 E-value=1.4e-10 Score=109.97 Aligned_cols=126 Identities=21% Similarity=0.306 Sum_probs=108.5
Q ss_pred cceEEecCCCCCCCCCCCCCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCcc-ccCCCCCcEEEccCC
Q 003203 386 CSAVFLNDIKTGVLPEGLEYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPPS-VHLLSNLQTLCLDQC 464 (839)
Q Consensus 386 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~ 464 (839)
.+.+.+.++.+..+|..+ .++|+.|++++|.. ..++...|.++++|++|++++|.+..+|.. +..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC-CCCCcEEEeCCCcc-cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 457888888888888654 37999999999874 678877889999999999999999988765 689999999999999
Q ss_pred CcCCC--cccCCCCCCCEEEccCCCCCCCchh-hcCCCccCeEecCCCcCCC
Q 003203 465 VVGDI--SIIGNLKKLEILSLVDSDIERLPNE-IGQLTQLRCLDLSFCRNLK 513 (839)
Q Consensus 465 ~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~ 513 (839)
.+..+ ..+.++++|++|++++|.++.+|.. +..+++|++|++++|....
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99884 3478999999999999999999876 4789999999999987433
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.19 E-value=6.2e-13 Score=128.97 Aligned_cols=154 Identities=21% Similarity=0.304 Sum_probs=112.8
Q ss_pred CccEEeecCCCC-CCCCChhhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCCCcCCC-cccCCCCCCCEEEcc
Q 003203 407 QLDFFCMNSKDP-FFKMPENFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGDI-SIIGNLKKLEILSLV 484 (839)
Q Consensus 407 ~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~ 484 (839)
.++...+.+... +..+|. .+.++++|++|++++|.+..+| .+..+++|++|++++|.+..+ ..+..+++|++|+++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp TCSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred chheeEeccccCcHhhhhH-HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence 344445544322 344554 4588999999999999999888 888999999999999988874 455667899999999
Q ss_pred CCCCCCCchhhcCCCccCeEecCCCcCCCccCc-hhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCCE
Q 003203 485 DSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPP-NVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTT 563 (839)
Q Consensus 485 ~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~ 563 (839)
+|.++.+| .+..+++|++|++++|. ++.++. ..++.+++|++|++++|.+....+... .........+..+++|+.
T Consensus 102 ~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~-~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 102 YNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN-ATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp EEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTT-THHHHHHHHHHHCSSCSE
T ss_pred CCcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcccccccccc-chHHHHHHHHHhCCCcEE
Confidence 99999887 68889999999999986 676654 347899999999999998753222100 000111234678889998
Q ss_pred EE
Q 003203 564 LE 565 (839)
Q Consensus 564 L~ 565 (839)
|+
T Consensus 179 Ld 180 (198)
T 1ds9_A 179 LD 180 (198)
T ss_dssp EC
T ss_pred EC
Confidence 86
No 147
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.17 E-value=1.7e-10 Score=121.56 Aligned_cols=193 Identities=13% Similarity=0.052 Sum_probs=121.9
Q ss_pred cCCCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHH
Q 003203 29 RSNQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIA 108 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 108 (839)
..|....+|+||+..++.+.+++..+..+.+.|+|++|+||||+|+.+++..........+++++.+.......+ +++.
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~ 93 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQI 93 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHH
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHH
Confidence 455666889999999999999998776666999999999999999999998643211112444443332232222 2222
Q ss_pred HHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCchhhh-hhhcCccce
Q 003203 109 DQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRYRDIL-VSEMHSQYN 185 (839)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~~~~-~~~~~~~~~ 185 (839)
..+...... +..+++.++|+||++.. ...+.+...+.....++++|+||+...-. .........
T Consensus 94 ~~~~~~~~~-------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~ 160 (323)
T 1sxj_B 94 KHFAQKKLH-------------LPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAI 160 (323)
T ss_dssp HHHHHBCCC-------------CCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHHHhcccc-------------CCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceE
Confidence 221100000 00246899999999864 23444444433344677888888765422 111233458
Q ss_pred EEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhH-HHHHHH
Q 003203 186 YCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLA-IVIVAR 236 (839)
Q Consensus 186 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla-i~~~~~ 236 (839)
+++.+++.++..+++...+...... -.++..+.|++.++|.|.. +..+..
T Consensus 161 i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 161 LRYSKLSDEDVLKRLLQIIKLEDVK-YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999999877321111 1145578899999999954 444433
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.13 E-value=2.4e-10 Score=107.67 Aligned_cols=101 Identities=25% Similarity=0.409 Sum_probs=77.8
Q ss_pred cEEEeCCCcccccCccccCCCCCcEEEccCCCcCCC--cccCCCCCCCEEEccCCCCCCCchh-hcCCCccCeEecCCCc
Q 003203 434 RGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGDI--SIIGNLKKLEILSLVDSDIERLPNE-IGQLTQLRCLDLSFCR 510 (839)
Q Consensus 434 ~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 510 (839)
+.++++++.+..+|..+. ++|++|++++|.+..+ ..++++++|++|+|++|+++.+|.. +.++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 678888888888887664 7788888888877773 4577888888888888888887765 4678888888888875
Q ss_pred CCCccCchhhcCccccCeEEccCCccc
Q 003203 511 NLKVIPPNVISKLTQLEELYMGNTSVK 537 (839)
Q Consensus 511 ~l~~~p~~~l~~l~~L~~L~l~~~~~~ 537 (839)
++.+|+..++.+++|++|++++|.+.
T Consensus 93 -l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 -LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -cceeCHHHhccccCCCEEEeCCCCcc
Confidence 77777766778888888888887764
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.12 E-value=2.8e-10 Score=106.85 Aligned_cols=102 Identities=25% Similarity=0.358 Sum_probs=81.2
Q ss_pred ccEEEeCCCcccccCccccCCCCCcEEEccCCCcCCC--cccCCCCCCCEEEccCCCCCCCchh-hcCCCccCeEecCCC
Q 003203 433 LRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGDI--SIIGNLKKLEILSLVDSDIERLPNE-IGQLTQLRCLDLSFC 509 (839)
Q Consensus 433 L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~ 509 (839)
.++++++++.++.+|..+. ++|++|++++|.+..+ ..++++++|++|++++|+++.+|.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 5678888888888887663 7888888888888773 5578888888888888888888765 478888888888887
Q ss_pred cCCCccCchhhcCccccCeEEccCCccc
Q 003203 510 RNLKVIPPNVISKLTQLEELYMGNTSVK 537 (839)
Q Consensus 510 ~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 537 (839)
. ++.+|+..++.+++|++|++++|.+.
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 Q-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred c-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5 77777766788888888888888764
No 150
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.04 E-value=6.6e-10 Score=117.18 Aligned_cols=195 Identities=12% Similarity=0.062 Sum_probs=120.8
Q ss_pred ccCCCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHH
Q 003203 28 LRSNQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEI 107 (839)
Q Consensus 28 ~~~~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 107 (839)
...|....+++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++.......-...+.++.+.......+ .+.
T Consensus 18 k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~ 96 (327)
T 1iqp_A 18 KYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVI-REK 96 (327)
T ss_dssp HTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTT-HHH
T ss_pred ccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHH-HHH
Confidence 3455667789999999999999998776667999999999999999999988643211111333332211111100 111
Q ss_pred HHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCchhhh-hhhcCccc
Q 003203 108 ADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRYRDIL-VSEMHSQY 184 (839)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~~~~-~~~~~~~~ 184 (839)
...+... ..+..+++.++|+||++.. ...+.+...+.....++++|+||+..... ........
T Consensus 97 ~~~~~~~--------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 97 VKEFART--------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp HHHHHHS--------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred HHHHHhh--------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc
Confidence 1100000 0011256889999999865 33444444433344577888888765422 11112234
Q ss_pred eEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHHHHh
Q 003203 185 NYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVARAL 238 (839)
Q Consensus 185 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L 238 (839)
.+++.+++.++..+++...+...... -.++..+.|++.++|.|..+..+...+
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENEGLE-LTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCE-ECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 78999999999999999887432221 224567889999999998655444433
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.04 E-value=4.8e-12 Score=122.67 Aligned_cols=128 Identities=23% Similarity=0.294 Sum_probs=106.5
Q ss_pred ccEEEeCCC--cccccCccccCCCCCcEEEccCCCcCCCcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCc
Q 003203 433 LRGLALSEM--QLLSLPPSVHLLSNLQTLCLDQCVVGDISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCR 510 (839)
Q Consensus 433 L~~L~l~~~--~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 510 (839)
|+.+.+.++ .++.+|..++.+++|++|++++|.+..++.+.++++|++|++++|.++.+|..+..+++|++|++++|.
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ 104 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc
Confidence 444555443 444566689999999999999999988779999999999999999999999988889999999999986
Q ss_pred CCCccCchhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCCEEEEEeccccC
Q 003203 511 NLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMI 573 (839)
Q Consensus 511 ~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~ 573 (839)
++.+| . ++.+++|++|++++|.+.. ...+..+..+++|+.|++++|.+..
T Consensus 105 -l~~l~-~-~~~l~~L~~L~l~~N~i~~----------~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 105 -IASLS-G-IEKLVNLRVLYMSNNKITN----------WGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp -CCCHH-H-HHHHHHSSEEEESEEECCC----------HHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred -CCcCC-c-cccCCCCCEEECCCCcCCc----------hhHHHHHhcCCCCCEEEecCCcccc
Confidence 77777 3 8999999999999998751 1123568899999999999987654
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.00 E-value=1.3e-09 Score=102.57 Aligned_cols=80 Identities=25% Similarity=0.345 Sum_probs=47.8
Q ss_pred CCccEEEeCCCccccc-CccccCCCCCcEEEccCCCcCCC--cccCCCCCCCEEEccCCCCCCCchh-hcCCCccCeEec
Q 003203 431 SKLRGLALSEMQLLSL-PPSVHLLSNLQTLCLDQCVVGDI--SIIGNLKKLEILSLVDSDIERLPNE-IGQLTQLRCLDL 506 (839)
Q Consensus 431 ~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 506 (839)
++|++|+|++|.+..+ |..+..+++|++|++++|.+..+ ..+.++++|++|++++|.++.+|.. +..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 4556666666666555 34555666666666666665553 2245666666666666666666554 566666666666
Q ss_pred CCCc
Q 003203 507 SFCR 510 (839)
Q Consensus 507 ~~~~ 510 (839)
++|.
T Consensus 113 ~~N~ 116 (174)
T 2r9u_A 113 YNNP 116 (174)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6654
No 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=1.1e-09 Score=115.24 Aligned_cols=160 Identities=16% Similarity=0.131 Sum_probs=103.6
Q ss_pred CCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccC-ccccCCCCCcEEEccCCCc----CCC--ccc-----
Q 003203 405 YPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLP-PSVHLLSNLQTLCLDQCVV----GDI--SII----- 472 (839)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~----~~~--~~~----- 472 (839)
|++|+.+.+.. .+..++...|.++++|+.|++++|.+..++ ..|..+.++.++....... ..+ ..+
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 78888888877 356788888888888888888888877654 3566666666666554210 000 000
Q ss_pred ---------------------------------------------CCCCCCCEEEccCCCCCCCchh-hcCCCccCeEec
Q 003203 473 ---------------------------------------------GNLKKLEILSLVDSDIERLPNE-IGQLTQLRCLDL 506 (839)
Q Consensus 473 ---------------------------------------------~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 506 (839)
..+++|+.|++++|+++.+|.. +.++++|+.+++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 0256777777777777777653 666777777777
Q ss_pred CCCcCCCccCchhhcCccccC-eEEccCCccccccccccccccccchhhhccCCCCCEEEEEeccccCCCccccc
Q 003203 507 SFCRNLKVIPPNVISKLTQLE-ELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAMILPKGLFS 580 (839)
Q Consensus 507 ~~~~~l~~~p~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 580 (839)
.++ ++.++...|.++++|+ .+.+.+ .+... ....+.++++|+.+++..+.+..++...|.
T Consensus 258 ~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I-----------~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 258 PHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAI-----------EFGAFMGCDNLRYVLATGDKITTLGDELFG 318 (329)
T ss_dssp CTT--CCEECTTTTTTCTTCCEEEEECT-TCCEE-----------CTTTTTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred Ccc--cceehHHHhhCChhccEEEEEcc-cceEE-----------chhhhhCCccCCEEEeCCCccCccchhhhc
Confidence 764 6777776677777777 777765 33211 124466777777777777776666655543
No 154
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.97 E-value=4.5e-09 Score=110.27 Aligned_cols=191 Identities=12% Similarity=0.069 Sum_probs=120.7
Q ss_pred cccCCCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHH
Q 003203 27 WLRSNQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDE 106 (839)
Q Consensus 27 ~~~~~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 106 (839)
....|....+++|++..++.+.+++..+..+.+.|+|++|+|||++|+.+++.......-...+.++.+.......+
T Consensus 9 ~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--- 85 (319)
T 2chq_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVV--- 85 (319)
T ss_dssp TTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTS---
T ss_pred HhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHH---
Confidence 34455667789999999999999998776666999999999999999999988642211011233333322111110
Q ss_pred HHHHhhhhccCCCchHHHHHHHHH--HHcCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCchhh-hhhhcC
Q 003203 107 IADQLCLELCKGTESERARTLFDR--LWKENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRYRDI-LVSEMH 181 (839)
Q Consensus 107 i~~~l~~~~~~~~~~~~~~~~~~~--l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~~~-~~~~~~ 181 (839)
.+........ +..+++.++|+||++.. ...+.+...+.....+.++|+||....- ......
T Consensus 86 --------------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 86 --------------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp --------------SHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred --------------HHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 0111111100 11246889999999864 3344555555444567788888876542 111123
Q ss_pred ccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHH
Q 003203 182 SQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVA 235 (839)
Q Consensus 182 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 235 (839)
....+++.+++.++..+++...+...... -.++..+.+++.++|.+..+....
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCC-BCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 34589999999999999999887432222 124557789999999987654433
No 155
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.95 E-value=1.8e-08 Score=102.98 Aligned_cols=168 Identities=11% Similarity=0.028 Sum_probs=108.4
Q ss_pred ccchHHHHHHHHHHhc----CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccC----C-eEEEEEEecCCCHHHHHHHH
Q 003203 37 FESRKSILCDILDWLT----SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLF----D-QVIFVLASSTANVKRIQDEI 107 (839)
Q Consensus 37 fvgR~~~~~~l~~~l~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f----~-~~~wv~~~~~~~~~~~~~~i 107 (839)
+.||++|+++|...|. .+..+.+.|+|++|+|||++|+.++++....... . .+++++.....+...++..|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 7899999999998876 5566789999999999999999999998643211 1 35667766777888999999
Q ss_pred HHHhhhhcc-CCCchHHHHHHHHHH--HcCCcEEEEEeCCCCccccccccccCCC-CCCCc--eEEEEeCchhh----hh
Q 003203 108 ADQLCLELC-KGTESERARTLFDRL--WKENKILVILDDICTSIDLVTVGIPFGN-AHRGC--KILLASRYRDI----LV 177 (839)
Q Consensus 108 ~~~l~~~~~-~~~~~~~~~~~~~~l--~~~~~~LlVlDdv~~~~~~~~l~~~l~~-~~~~s--~iivTtr~~~~----~~ 177 (839)
++++..... .....+.+...+..+ ..++++++|||+++...+-+.+...+.+ ...++ .||.++.+.+. ..
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~ 181 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQIN 181 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcc
Confidence 999854322 122334445555543 2357899999999875422222211110 01222 34444544322 11
Q ss_pred hh---cCccceEEccCCCHHHHHHHHHHHh
Q 003203 178 SE---MHSQYNYCVSVLNKEEAWSLFKKMV 204 (839)
Q Consensus 178 ~~---~~~~~~~~l~~L~~~ea~~Lf~~~~ 204 (839)
.. .-....+.+++++.+|-.+++.+++
T Consensus 182 ~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 182 IMPSLKAHFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp TCHHHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhccCCceEEEeCCCCHHHHHHHHHHHH
Confidence 00 1112578999999999999999888
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.93 E-value=4.7e-09 Score=98.41 Aligned_cols=80 Identities=25% Similarity=0.316 Sum_probs=48.1
Q ss_pred CCccEEEeCCCccccc-CccccCCCCCcEEEccCCCcCCC--cccCCCCCCCEEEccCCCCCCCchh-hcCCCccCeEec
Q 003203 431 SKLRGLALSEMQLLSL-PPSVHLLSNLQTLCLDQCVVGDI--SIIGNLKKLEILSLVDSDIERLPNE-IGQLTQLRCLDL 506 (839)
Q Consensus 431 ~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 506 (839)
++|++|+|++|.++.+ |..+..+++|++|++++|.+..+ ..+.++++|++|++++|+++.+|.. +.++++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 4556666666666655 34455666666666666665552 2345666666666666666666553 566666666666
Q ss_pred CCCc
Q 003203 507 SFCR 510 (839)
Q Consensus 507 ~~~~ 510 (839)
++|.
T Consensus 110 ~~N~ 113 (170)
T 3g39_A 110 LNNP 113 (170)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6654
No 157
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.93 E-value=2.8e-09 Score=112.14 Aligned_cols=178 Identities=11% Similarity=0.088 Sum_probs=111.2
Q ss_pred CCCCccccchHHHHHHHHHHhc-----CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHH
Q 003203 31 NQGYKSFESRKSILCDILDWLT-----SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQD 105 (839)
Q Consensus 31 ~~~~~~fvgR~~~~~~l~~~l~-----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 105 (839)
|....+|+|++..++++..++. ....+.+.|+|++|+|||++|+.+++.... ..++++.+......++.
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~~~~l~- 81 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAIEKPGDLA- 81 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTCCSHHHHH-
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccccCChHHHH-
Confidence 4456789999999999888875 233467889999999999999999987641 23344333322222111
Q ss_pred HHHHHhhhhccCCCchHHHHHHHHHHHc--CCcEEEEEeCCCCcc--ccccccccCCC------------------CCCC
Q 003203 106 EIADQLCLELCKGTESERARTLFDRLWK--ENKILVILDDICTSI--DLVTVGIPFGN------------------AHRG 163 (839)
Q Consensus 106 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~--~~~~LlVlDdv~~~~--~~~~l~~~l~~------------------~~~~ 163 (839)
..+.. .++.+|++||++... ....+...+.. ..++
T Consensus 82 -----------------------~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 82 -----------------------AILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp -----------------------HHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred -----------------------HHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 11111 356688899997642 11111111000 0124
Q ss_pred ceEEEEeCchhhhhh-hcCc-cceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHHHHh
Q 003203 164 CKILLASRYRDILVS-EMHS-QYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVARAL 238 (839)
Q Consensus 164 s~iivTtr~~~~~~~-~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~L 238 (839)
.++|.||........ .... ...+.+.+++.++..+++.+.+...... -..+..+.+++.++|.|..+..+...+
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR-ITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 567777765432210 1112 3589999999999999999888432221 224567899999999998877766554
No 158
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.90 E-value=1.5e-09 Score=114.41 Aligned_cols=284 Identities=11% Similarity=0.070 Sum_probs=150.9
Q ss_pred CCCccEEEeCCCcccccCccccC-CCCCcEEEccCCCcCCC-cccCCCCCCCEEEccCCCCCCCch-hhcC--------C
Q 003203 430 MSKLRGLALSEMQLLSLPPSVHL-LSNLQTLCLDQCVVGDI-SIIGNLKKLEILSLVDSDIERLPN-EIGQ--------L 498 (839)
Q Consensus 430 l~~L~~L~l~~~~~~~lp~~~~~-l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~--------l 498 (839)
+.+++.|.++++--..-...+.. +++|++|+|++|.+... ..-+.++.++.+.+..+ .+|. .+.+ +
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~ 100 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGK 100 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEEC
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhccccccccccc
Confidence 45678888876421110112222 77888888888877731 11122233445555444 2333 3455 8
Q ss_pred CccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCCEEEEEec----cccCC
Q 003203 499 TQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQ----DAMIL 574 (839)
Q Consensus 499 ~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~----~~~~~ 574 (839)
++|+.|++.. .++.++...+.++++|+.|++.++.+....+ ..+..+.++..+..... ....+
T Consensus 101 ~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~-----------~aF~~~~~l~~l~~~~~~~~~~~~~i 167 (329)
T 3sb4_A 101 QTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLP-----------EALADSVTAIFIPLGSSDAYRFKNRW 167 (329)
T ss_dssp TTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECT-----------TSSCTTTCEEEECTTCTHHHHTSTTT
T ss_pred CCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccch-----------hhhcCCCceEEecCcchhhhhccccc
Confidence 8888888887 4788888778888888888888876542211 22333333333322221 11111
Q ss_pred CccccccccceEEEEEcCCCCCCCCCCCcc-EEEecccCCcchHH-HHH---HhcccceEEeccccCchhhccccccCCC
Q 003203 575 PKGLFSKKLERYKIYIGDEWDWSGKSDNTR-ALKLKLCSSIYLDE-ILM---QLKGIEHLYLDEVPGIKNVLYDLEREGF 649 (839)
Q Consensus 575 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~-~L~l~~~~~~~~~~-~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~~l 649 (839)
....+. .+..++ .+.+.....+ .. ... ...++..+.+.+.-...+.. .+ ...+
T Consensus 168 ~~~~f~------------------~~~~L~~~i~~~~~~~l--~~~~~~~~~~~~~~~~l~~~~~l~~~~~~-~l-~~~~ 225 (329)
T 3sb4_A 168 EHFAFI------------------EGEPLETTIQVGAMGKL--EDEIMKAGLQPRDINFLTIEGKLDNADFK-LI-RDYM 225 (329)
T ss_dssp TTSCEE------------------ESCCCEEEEEECTTCCH--HHHHHHTTCCGGGCSEEEEEECCCHHHHH-HH-HHHC
T ss_pred cccccc------------------cccccceeEEecCCCcH--HHHHhhcccCccccceEEEeeeecHHHHH-HH-HHhc
Confidence 111111 111222 2222221111 11 111 24555666665432221111 10 1236
Q ss_pred CCCCeeeeccCCCcceeecCCCcccccccccchhhhhcccccccccccccccccccCCCC-EEEEecCCCcccccchhhh
Q 003203 650 PQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICHSQLTAVSFCNLK-IIKVRNCDRLKNVFSFSIA 728 (839)
Q Consensus 650 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~-~L~i~~c~~L~~l~~~~~~ 728 (839)
++|+.|+|.+|. +..+++. .+..+++|++|++.+ +++.+.... ...+++|+ .|.+.+ +++.+... ..
T Consensus 226 ~~L~~l~L~~n~-i~~I~~~----aF~~~~~L~~l~l~~--ni~~I~~~a--F~~~~~L~~~l~l~~--~l~~I~~~-aF 293 (329)
T 3sb4_A 226 PNLVSLDISKTN-ATTIPDF----TFAQKKYLLKIKLPH--NLKTIGQRV--FSNCGRLAGTLELPA--SVTAIEFG-AF 293 (329)
T ss_dssp TTCCEEECTTBC-CCEECTT----TTTTCTTCCEEECCT--TCCEECTTT--TTTCTTCCEEEEECT--TCCEECTT-TT
T ss_pred CCCeEEECCCCC-cceecHh----hhhCCCCCCEEECCc--ccceehHHH--hhCChhccEEEEEcc--cceEEchh-hh
Confidence 788888888763 5555542 456777888888876 366664433 34567788 888876 67777654 34
Q ss_pred hcCCCccEEEEecccchHHHhhcccCCccccCCCccccccccceeec
Q 003203 729 RGLPQLQTITVIKCKNVEEIFMMERDGYVDCKEVNKIEFSQLRSLTL 775 (839)
Q Consensus 729 ~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 775 (839)
.+|++|+.|++.+. +++.+. ......+++|+.|+.
T Consensus 294 ~~c~~L~~l~l~~n-~i~~I~-----------~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 294 MGCDNLRYVLATGD-KITTLG-----------DELFGNGVPSKLIYK 328 (329)
T ss_dssp TTCTTEEEEEECSS-CCCEEC-----------TTTTCTTCCCCEEEC
T ss_pred hCCccCCEEEeCCC-ccCccc-----------hhhhcCCcchhhhcc
Confidence 78888888888543 444442 223345788887764
No 159
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.83 E-value=8e-09 Score=99.43 Aligned_cols=155 Identities=15% Similarity=0.149 Sum_probs=91.3
Q ss_pred CCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhcc-----CCeEEEEEEecCCCHHHHHH
Q 003203 31 NQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNL-----FDQVIFVLASSTANVKRIQD 105 (839)
Q Consensus 31 ~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~ 105 (839)
+.....|+||+++++++.+++.....+.+.|+|++|+|||++|+.+++....... ...+++++++.. .
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~- 90 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL------V- 90 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHH------H-
T ss_pred hccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHH------h-
Confidence 4556779999999999999998776678899999999999999999998754211 123444433211 0
Q ss_pred HHHHHhhhhccCCCchHHHHHHHHHHH-cCCcEEEEEeCCCCcc---------c-cccccccCCCCCCCceEEEEeCchh
Q 003203 106 EIADQLCLELCKGTESERARTLFDRLW-KENKILVILDDICTSI---------D-LVTVGIPFGNAHRGCKILLASRYRD 174 (839)
Q Consensus 106 ~i~~~l~~~~~~~~~~~~~~~~~~~l~-~~~~~LlVlDdv~~~~---------~-~~~l~~~l~~~~~~s~iivTtr~~~ 174 (839)
...............+.+.+. .+++.+||+||++... . ...+...+ ...+..+|+||....
T Consensus 91 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~--~~~~~~~i~~~~~~~ 162 (195)
T 1jbk_A 91 ------AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--ARGELHCVGATTLDE 162 (195)
T ss_dssp ------TTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHH--HTTSCCEEEEECHHH
T ss_pred ------ccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh--ccCCeEEEEeCCHHH
Confidence 000000001112223333332 3578899999997642 1 11111111 123456777777654
Q ss_pred hh------hhhcCccceEEccCCCHHHHHHHH
Q 003203 175 IL------VSEMHSQYNYCVSVLNKEEAWSLF 200 (839)
Q Consensus 175 ~~------~~~~~~~~~~~l~~L~~~ea~~Lf 200 (839)
.. .........+.+.+++.++..+++
T Consensus 163 ~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 163 YRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 21 111222336889999988877654
No 160
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.83 E-value=2.4e-08 Score=107.23 Aligned_cols=198 Identities=13% Similarity=0.141 Sum_probs=116.6
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCC-eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHH
Q 003203 30 SNQGYKSFESRKSILCDILDWLTSPN-VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIA 108 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 108 (839)
.|....+++||+..++.+.+++..++ ...+.|+|++|+||||+|+.+++.......+.. . ....... ...+.
T Consensus 11 rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~---~~~~~~~-~~~~~ 83 (373)
T 1jr3_A 11 RPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---T---PCGVCDN-CREIE 83 (373)
T ss_dssp CCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---S---CCSSSHH-HHHHH
T ss_pred CCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---C---CCcccHH-HHHHh
Confidence 34456679999999999999997554 357889999999999999999988753221100 0 0000000 00111
Q ss_pred HH-----hhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCchhh-h
Q 003203 109 DQ-----LCLELCKGTESERARTLFDRLW----KENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRYRDI-L 176 (839)
Q Consensus 109 ~~-----l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~~~-~ 176 (839)
.. +..........+....+.+.+. .+++.++|+||++.. ...+.+...+.....+..+|++|....- .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 00 0000000011112223333332 246789999999764 2344444444333456677777765432 2
Q ss_pred hhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHH
Q 003203 177 VSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVA 235 (839)
Q Consensus 177 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 235 (839)
.........+++.+++.++..+++.+.+....... ..+....|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~-~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHCCCCHHHHHHHH
Confidence 21223356899999999999999998773211111 13457789999999998776554
No 161
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.73 E-value=3.6e-08 Score=104.95 Aligned_cols=201 Identities=11% Similarity=0.085 Sum_probs=119.0
Q ss_pred ccCCCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCC-eEEEEEEecCCCHHHHHHH
Q 003203 28 LRSNQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFD-QVIFVLASSTANVKRIQDE 106 (839)
Q Consensus 28 ~~~~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~ 106 (839)
...|.....++|+++.++.+..++..+..+.+.|+|++|+||||+|+.+++.......+. .++.++.+.......+ .+
T Consensus 30 k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~ 108 (353)
T 1sxj_D 30 KYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-RE 108 (353)
T ss_dssp HTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TT
T ss_pred hcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HH
Confidence 345566788999999999999999877555589999999999999999998865321111 2334444333333322 22
Q ss_pred HHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccccCCCCCCCceEEEEeCchhh-hhhhcCcc
Q 003203 107 IADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI--DLVTVGIPFGNAHRGCKILLASRYRDI-LVSEMHSQ 183 (839)
Q Consensus 107 i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTtr~~~~-~~~~~~~~ 183 (839)
....+............ ......+++-+|++|+++... ....+...+.......++|++|....- ........
T Consensus 109 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 109 KVKNFARLTVSKPSKHD----LENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHHSCCCCCCTTH----HHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHHhhhcccccchhh----cccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 22221111000000000 001112356799999987542 223333333323345677777765432 11111223
Q ss_pred ceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHH
Q 003203 184 YNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIV 234 (839)
Q Consensus 184 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 234 (839)
..+++.+++.++..+.+.+.+...... -.++..+.|++.++|.|..+..+
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENVK-CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 478999999999999999887432211 12456789999999998864443
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.73 E-value=2.6e-08 Score=105.80 Aligned_cols=98 Identities=22% Similarity=0.280 Sum_probs=48.8
Q ss_pred EEeCCC-cccccCccccCCCCCcEEEccC-CCcCCC--cccCCCCCCCEEEccCCCCCCCch-hhcCCCccCeEecCCCc
Q 003203 436 LALSEM-QLLSLPPSVHLLSNLQTLCLDQ-CVVGDI--SIIGNLKKLEILSLVDSDIERLPN-EIGQLTQLRCLDLSFCR 510 (839)
Q Consensus 436 L~l~~~-~~~~lp~~~~~l~~L~~L~l~~-~~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 510 (839)
++++++ ++..+|. +..+++|++|+|++ |.+..+ ..|++|.+|++|+|++|+++.+|. .+.+|++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 344444 4555555 55555555555553 444442 335555555555555555554433 34555555555555543
Q ss_pred CCCccCchhhcCccccCeEEccCCcc
Q 003203 511 NLKVIPPNVISKLTQLEELYMGNTSV 536 (839)
Q Consensus 511 ~l~~~p~~~l~~l~~L~~L~l~~~~~ 536 (839)
++.+|+..+..++ |+.|++.+|.+
T Consensus 92 -l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 92 -LESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp -CSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred -cceeCHHHcccCC-ceEEEeeCCCc
Confidence 4455544333333 55555555544
No 163
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.72 E-value=1.4e-09 Score=115.80 Aligned_cols=134 Identities=17% Similarity=0.155 Sum_probs=60.9
Q ss_pred CCccEEEeCCCcccc--cCccccCCCCCcEEEccCCCcCC--Cccc-----CCCCCCCEEEccCCCCCC-----Cchhhc
Q 003203 431 SKLRGLALSEMQLLS--LPPSVHLLSNLQTLCLDQCVVGD--ISII-----GNLKKLEILSLVDSDIER-----LPNEIG 496 (839)
Q Consensus 431 ~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~--~~~~-----~~l~~L~~L~l~~~~l~~-----lp~~i~ 496 (839)
++|++|+|++|.+.. +......+++|++|++++|.+.. ...+ ...++|++|+|++|.++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 455555555555431 11111233455555555555443 1111 234455556665555542 333445
Q ss_pred CCCccCeEecCCCcCCCccC----chhhcCccccCeEEccCCccccccccccccccccchhhhccCCCCCEEEEEecccc
Q 003203 497 QLTQLRCLDLSFCRNLKVIP----PNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAM 572 (839)
Q Consensus 497 ~l~~L~~L~l~~~~~l~~~p----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 572 (839)
.+++|++|++++|. ++... ...+...++|++|++++|.+... ........+...++|+.|++++|.+.
T Consensus 181 ~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~-------g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDT-------AALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH-------HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH-------HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 55556666666554 33211 11134455566666666554310 01112233445555666666655543
No 164
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.72 E-value=2.1e-07 Score=100.84 Aligned_cols=181 Identities=12% Similarity=0.102 Sum_probs=112.0
Q ss_pred ccCCCCCccccchHHHH---HHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC-CCHHHH
Q 003203 28 LRSNQGYKSFESRKSIL---CDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST-ANVKRI 103 (839)
Q Consensus 28 ~~~~~~~~~fvgR~~~~---~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~ 103 (839)
...|....+++|++..+ +.+...+..+..+.+.|+|++|+||||+|+.+++..... ++.++.. ....++
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~-------f~~l~a~~~~~~~i 91 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD-------VERISAVTSGVKEI 91 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE-------EEEEETTTCCHHHH
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC-------eEEEEeccCCHHHH
Confidence 34567778899999998 788888887777889999999999999999999876421 2333322 222222
Q ss_pred HHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEe-Cchh--hhhh
Q 003203 104 QDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLAS-RYRD--ILVS 178 (839)
Q Consensus 104 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTt-r~~~--~~~~ 178 (839)
+.+... .......+++.+|++|+++.. .+.+.+...+.. ....+|.+| .+.. +...
T Consensus 92 -r~~~~~----------------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 92 -REAIER----------------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSA 152 (447)
T ss_dssp -HHHHHH----------------HHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHH
T ss_pred -HHHHHH----------------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHH
Confidence 222211 111112357899999999865 233333333322 223444444 4432 1111
Q ss_pred hcCccceEEccCCCHHHHHHHHHHHhCCC------CCCcchHHHHHHHHHHhCCchhHHHHH
Q 003203 179 EMHSQYNYCVSVLNKEEAWSLFKKMVGDY------VEDSDLESIAIQVANECGGLPLAIVIV 234 (839)
Q Consensus 179 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~------~~~~~~~~~~~~I~~~~~G~Plai~~~ 234 (839)
......++.+++++.++..+++.+.+... ....-.++..+.|++.++|.+-.+.-+
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 22345688999999999999999887331 111123556788999999988654433
No 165
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.71 E-value=1.4e-07 Score=97.01 Aligned_cols=184 Identities=18% Similarity=0.190 Sum_probs=108.5
Q ss_pred ccCCCCCccccchHHHHHHHHHHhcC-------------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEE
Q 003203 28 LRSNQGYKSFESRKSILCDILDWLTS-------------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLA 94 (839)
Q Consensus 28 ~~~~~~~~~fvgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 94 (839)
..+.....+++|.++.+++|.+.+.. ...+.+.|+|++|+|||++|+.+++.... ..+.+..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~-----~~~~v~~ 84 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA-----TFIRVVG 84 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC-----EEEEEEG
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEeh
Confidence 34455677899999999999888742 34467899999999999999999887642 1223322
Q ss_pred ecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc----------------ccccccccCC
Q 003203 95 SSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI----------------DLVTVGIPFG 158 (839)
Q Consensus 95 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~----------------~~~~l~~~l~ 158 (839)
+.-... ...........+........+.+|++||++... .+..+...+.
T Consensus 85 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 149 (285)
T 3h4m_A 85 SELVKK---------------FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMD 149 (285)
T ss_dssp GGGCCC---------------STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHh---------------ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhh
Confidence 211100 000111222333444444577899999996531 1111111111
Q ss_pred --CCCCCceEEEEeCchhhhhh-hc---CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCc-hhHH
Q 003203 159 --NAHRGCKILLASRYRDILVS-EM---HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGL-PLAI 231 (839)
Q Consensus 159 --~~~~~s~iivTtr~~~~~~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plai 231 (839)
....+..||.||........ .. .....+.++..+.++-.++++..+.......+. ....+++.+.|. |-.+
T Consensus 150 ~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~--~~~~l~~~~~g~~~~~i 227 (285)
T 3h4m_A 150 GFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDV--NLEEIAKMTEGCVGAEL 227 (285)
T ss_dssp TTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHHCTTCCHHHH
T ss_pred CCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcC--CHHHHHHHcCCCCHHHH
Confidence 12345677778876543211 11 223578999999999999999888543222111 145778888774 5444
Q ss_pred HH
Q 003203 232 VI 233 (839)
Q Consensus 232 ~~ 233 (839)
..
T Consensus 228 ~~ 229 (285)
T 3h4m_A 228 KA 229 (285)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 166
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.70 E-value=6.4e-07 Score=96.21 Aligned_cols=121 Identities=17% Similarity=0.212 Sum_probs=86.5
Q ss_pred CCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccCc-cccCCCCCcEEEccCCCcCC--CcccCCCCCCCEEE
Q 003203 406 PQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLPP-SVHLLSNLQTLCLDQCVVGD--ISIIGNLKKLEILS 482 (839)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~ 482 (839)
..++.+.+... +..++...|.++ +|+.+.+..+ +..++. .|.+ .+|+.+.+.. .+.. ...|.+|.+|+.++
T Consensus 113 ~~l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCTT--CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECCc--cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 44555555432 456667777775 6888888765 555544 4444 3688888876 4444 35688888999999
Q ss_pred ccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCC
Q 003203 483 LVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNT 534 (839)
Q Consensus 483 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~ 534 (839)
+.++.++.+|...-...+|+.+.+.. .++.++...+.++++|+.+.+..+
T Consensus 187 l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 187 LSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp CTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT
T ss_pred cCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC
Confidence 98888888887765678888888875 378888877888888888888654
No 167
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.65 E-value=2.1e-07 Score=100.01 Aligned_cols=255 Identities=11% Similarity=0.153 Sum_probs=145.8
Q ss_pred cccceEEecCCCCCCCCCCC-CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccC-ccccCCCCCcEEEc
Q 003203 384 KNCSAVFLNDIKTGVLPEGL-EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLP-PSVHLLSNLQTLCL 461 (839)
Q Consensus 384 ~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l 461 (839)
..+..+.+.. .+..++... .-.+|+.+.+..+ +..++...|.++ +|+.+.+.+ .+..++ ..+.+|++|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccCCccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 3444444442 233343322 2236788777654 567777777774 688888875 555553 46777888888888
Q ss_pred cCCCcCCC--cccCCCCCCCEEEccCCCCCCCch-hhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCcccc
Q 003203 462 DQCVVGDI--SIIGNLKKLEILSLVDSDIERLPN-EIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKW 538 (839)
Q Consensus 462 ~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~ 538 (839)
..|.+..+ ..|. +.+|+.+.+..+ ++.++. .+.++++|+.+.+.. .++.++...+.+ .+|+.+.+.++ +..
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~~-i~~ 261 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPNG-VTN 261 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEETT-CCE
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCCC-ccE
Confidence 88777663 3344 578888888744 666644 466778888888876 367777766666 67888877443 211
Q ss_pred ccccccccccccchhhhccCCCCCEEEEEecccc-----CCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCC
Q 003203 539 EFEGLNIERSNASLQELRHLSQLTTLEIQIQDAM-----ILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSS 613 (839)
Q Consensus 539 ~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~ 613 (839)
..-..+..+++|+.+.+.++... .++...| ..+++|+.+.+...-.
T Consensus 262 -----------I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF------------------~~c~~L~~l~l~~~i~ 312 (401)
T 4fdw_A 262 -----------IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL------------------EGCPKLARFEIPESIR 312 (401)
T ss_dssp -----------ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT------------------TTCTTCCEECCCTTCC
T ss_pred -----------EChhHhhCCCCCCEEEeCCccccCCcccEECHHHh------------------hCCccCCeEEeCCceE
Confidence 11244677888888888765543 2333332 2233444444332100
Q ss_pred cchHHHHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccc-cchhhhhc
Q 003203 614 IYLDEILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFP-LLESLVLH 687 (839)
Q Consensus 614 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p-~L~~L~l~ 687 (839)
.-....+..+.+|+.+.+.. +++.+... ...++ +|+.+.+.++.- ..+.. ..+..++ ++..|.+.
T Consensus 313 ~I~~~aF~~c~~L~~l~lp~--~l~~I~~~-aF~~~-~L~~l~l~~n~~-~~l~~----~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 313 ILGQGLLGGNRKVTQLTIPA--NVTQINFS-AFNNT-GIKEVKVEGTTP-PQVFE----KVWYGFPDDITVIRVP 378 (401)
T ss_dssp EECTTTTTTCCSCCEEEECT--TCCEECTT-SSSSS-CCCEEEECCSSC-CBCCC----SSCCCSCTTCCEEEEC
T ss_pred EEhhhhhcCCCCccEEEECc--cccEEcHH-hCCCC-CCCEEEEcCCCC-ccccc----ccccCCCCCccEEEeC
Confidence 00111445567777777743 23333222 22456 899999988742 22221 1233443 56666654
No 168
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.64 E-value=3e-08 Score=99.18 Aligned_cols=176 Identities=14% Similarity=0.158 Sum_probs=106.5
Q ss_pred CCCccccch---HHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHH
Q 003203 32 QGYKSFESR---KSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIA 108 (839)
Q Consensus 32 ~~~~~fvgR---~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 108 (839)
....+|+|+ +..++.+..+...+..+.+.|+|++|+||||+|+.+++..... ...+.|++.+...+. +.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~~ 96 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------ST 96 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------CG
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------HH
Confidence 456778874 3666777777666566889999999999999999999987654 334666665432110 00
Q ss_pred HHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc----cccccccCCC-CCCC-ceEEEEeCchhhh-----h
Q 003203 109 DQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID----LVTVGIPFGN-AHRG-CKILLASRYRDIL-----V 177 (839)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~----~~~l~~~l~~-~~~~-s~iivTtr~~~~~-----~ 177 (839)
...+.+ .++.+||+||++.... .+.+...+.. ...+ .++|+||+...-. .
T Consensus 97 -----------------~~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~ 157 (242)
T 3bos_A 97 -----------------ALLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLP 157 (242)
T ss_dssp -----------------GGGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCH
T ss_pred -----------------HHHHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhh
Confidence 000111 2567899999975421 2222221111 1122 2477777743310 0
Q ss_pred ---hhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHH
Q 003203 178 ---SEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVA 235 (839)
Q Consensus 178 ---~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 235 (839)
........+++++++.++..+++...+..... .-.++..+.+++.++|.+-.+..+.
T Consensus 158 ~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 158 DLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 00111268999999999999999988732111 1124567789999999887665443
No 169
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.63 E-value=6.2e-07 Score=91.21 Aligned_cols=194 Identities=16% Similarity=0.190 Sum_probs=105.1
Q ss_pred ccccchHHHHHHHHH-------Hhc---CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHH
Q 003203 35 KSFESRKSILCDILD-------WLT---SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQ 104 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~-------~l~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 104 (839)
.+++|+...++++.+ .+. ....+.+.|+|++|+|||++|+.+++... .. .+.++.+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~----~~-~~~i~~~~~~------ 101 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN----FP-FIKICSPDKM------ 101 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT----CS-EEEEECGGGC------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC----CC-EEEEeCHHHh------
Confidence 457888777666666 332 44567899999999999999999998753 22 2222222110
Q ss_pred HHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc------------cccccccccCC---CCCCCceEEEE
Q 003203 105 DEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS------------IDLVTVGIPFG---NAHRGCKILLA 169 (839)
Q Consensus 105 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~------------~~~~~l~~~l~---~~~~~s~iivT 169 (839)
.+. ...........+.......+..+|++||++.. ..++.+...+. .......||.|
T Consensus 102 ------~g~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~t 173 (272)
T 1d2n_A 102 ------IGF--SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGT 173 (272)
T ss_dssp ------TTC--CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEE
T ss_pred ------cCC--chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEe
Confidence 000 00000112223333333457889999998653 01122222222 12334456777
Q ss_pred eCchhhhhh---hcCccceEEccCCCH-HHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCC------chhHHHHHHHHhc
Q 003203 170 SRYRDILVS---EMHSQYNYCVSVLNK-EEAWSLFKKMVGDYVEDSDLESIAIQVANECGG------LPLAIVIVARALR 239 (839)
Q Consensus 170 tr~~~~~~~---~~~~~~~~~l~~L~~-~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G------~Plai~~~~~~L~ 239 (839)
|........ ...-...+.+++++. ++..+++.+... . ..+....|++.+.| ..-++..+-....
T Consensus 174 tn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~--~----~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 174 TSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN--F----KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ 247 (272)
T ss_dssp ESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC--S----CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT
T ss_pred cCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC--C----CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh
Confidence 776654321 111246789999998 666666665321 1 13446788888888 3344444433333
Q ss_pred CCChhHHHHHHHHh
Q 003203 240 NKPLSEWKGALLKL 253 (839)
Q Consensus 240 ~~~~~~w~~~l~~l 253 (839)
......+..++..+
T Consensus 248 ~~~~~~~~~~~~~l 261 (272)
T 1d2n_A 248 MDPEYRVRKFLALL 261 (272)
T ss_dssp SCGGGHHHHHHHHH
T ss_pred hchHHHHHHHHHHH
Confidence 23445566666554
No 170
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.62 E-value=1.5e-07 Score=104.99 Aligned_cols=214 Identities=11% Similarity=0.076 Sum_probs=119.9
Q ss_pred ccCCCCCccccchHHHHHHHHHHhcC-----------------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEE
Q 003203 28 LRSNQGYKSFESRKSILCDILDWLTS-----------------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVI 90 (839)
Q Consensus 28 ~~~~~~~~~fvgR~~~~~~l~~~l~~-----------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~ 90 (839)
...|....+++|+++.++++.+|+.. +..+.+.|+|++|+||||+|+.+++... + .++
T Consensus 32 kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i 106 (516)
T 1sxj_A 32 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DIL 106 (516)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEE
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEE
Confidence 44566778899999999999999874 1347899999999999999999998772 2 244
Q ss_pred EEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc-----cccccccCCCCCCCce
Q 003203 91 FVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID-----LVTVGIPFGNAHRGCK 165 (839)
Q Consensus 91 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~-----~~~l~~~l~~~~~~s~ 165 (839)
.++.+...... +....................... .....+++.+||+|+++.... +..+...+.. .+.+
T Consensus 107 ~in~s~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~ 181 (516)
T 1sxj_A 107 EQNASDVRSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTP 181 (516)
T ss_dssp EECTTSCCCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSC
T ss_pred EEeCCCcchHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCC
Confidence 45544443333 222222111110000000000000 000135788999999976421 1222222111 2344
Q ss_pred EEEEeCchhh--hhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCc-hhHHHHHHHHhcC-C
Q 003203 166 ILLASRYRDI--LVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGL-PLAIVIVARALRN-K 241 (839)
Q Consensus 166 iivTtr~~~~--~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plai~~~~~~L~~-~ 241 (839)
||+++.+... ..........+.+++++.++..+.+...+......-+ ++....|++.++|. +-++..+..+... .
T Consensus 182 iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~-~~~l~~la~~s~GdiR~~i~~L~~~~~~~~ 260 (516)
T 1sxj_A 182 LILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD-PNVIDRLIQTTRGDIRQVINLLSTISTTTK 260 (516)
T ss_dssp EEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC-TTHHHHHHHHTTTCHHHHHHHHTHHHHHSS
T ss_pred EEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCcHHHHHHHHHHHHhcCC
Confidence 6666654321 1112333567999999999999999887732111111 23467899999995 5555555433222 1
Q ss_pred --ChhHHHHHHHH
Q 003203 242 --PLSEWKGALLK 252 (839)
Q Consensus 242 --~~~~w~~~l~~ 252 (839)
+.+..+.++..
T Consensus 261 ~It~~~v~~~~~~ 273 (516)
T 1sxj_A 261 TINHENINEISKA 273 (516)
T ss_dssp CCCTTHHHHHHHH
T ss_pred CCchHHHHHHHHh
Confidence 44444444443
No 171
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.60 E-value=9.8e-08 Score=101.28 Aligned_cols=97 Identities=19% Similarity=0.112 Sum_probs=58.5
Q ss_pred eecCCCCCCCCChhhhcCCCCccEEEeCC-CcccccC-ccccCCCCCcEEEccCCCcCC--CcccCCCCCCCEEEccCCC
Q 003203 412 CMNSKDPFFKMPENFFTGMSKLRGLALSE-MQLLSLP-PSVHLLSNLQTLCLDQCVVGD--ISIIGNLKKLEILSLVDSD 487 (839)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~ 487 (839)
++++++.+..+|. +..+++|++|+|++ |.+..+| ..|+.|++|++|+|++|.+.. +..|++|++|++|+|++|+
T Consensus 14 ~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 4444423445555 45666666666664 6666655 346666666666666666665 2355667777777777777
Q ss_pred CCCCchhhcCCCccCeEecCCCc
Q 003203 488 IERLPNEIGQLTQLRCLDLSFCR 510 (839)
Q Consensus 488 l~~lp~~i~~l~~L~~L~l~~~~ 510 (839)
++.+|..+....+|++|++.+|.
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSC
T ss_pred cceeCHHHcccCCceEEEeeCCC
Confidence 66666554333337777776654
No 172
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.60 E-value=1.4e-07 Score=100.46 Aligned_cols=202 Identities=10% Similarity=0.089 Sum_probs=112.0
Q ss_pred cccCCCCCccccchHHHHHHHHHHh-cCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhcc----CCe-------------
Q 003203 27 WLRSNQGYKSFESRKSILCDILDWL-TSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNL----FDQ------------- 88 (839)
Q Consensus 27 ~~~~~~~~~~fvgR~~~~~~l~~~l-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~------------- 88 (839)
....|....+++|++..++.+.+++ ..++.+.+.|+|+.|+||||+|+.++........ ++.
T Consensus 6 ~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~ 85 (354)
T 1sxj_E 6 DKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLEL 85 (354)
T ss_dssp TTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------
T ss_pred hccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccccccee
Confidence 3345666788999999999999998 6655555999999999999999999886421110 000
Q ss_pred -------EEEEEEecCC-CHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccccCC
Q 003203 89 -------VIFVLASSTA-NVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI--DLVTVGIPFG 158 (839)
Q Consensus 89 -------~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~ 158 (839)
.+.+..+... ......++++..+......... . ....+ .+++-++|+|+++..+ ..+.+...+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~--~ls~l-~~~~~vlilDE~~~L~~~~~~~L~~~le 159 (354)
T 1sxj_E 86 NVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQ---D--SKDGL-AHRYKCVIINEANSLTKDAQAALRRTME 159 (354)
T ss_dssp CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHH
T ss_pred eeecccceEEecHhhcCCcchHHHHHHHHHHHHhcccccc---c--ccccc-CCCCeEEEEeCccccCHHHHHHHHHHHH
Confidence 1111111100 0000122222222111000000 0 00001 2367799999998642 2233333332
Q ss_pred CCCCCceEEEEeCchh-hhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHH
Q 003203 159 NAHRGCKILLASRYRD-ILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIV 234 (839)
Q Consensus 159 ~~~~~s~iivTtr~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 234 (839)
....+.++|++|.+.. +..........+++++++.++..+.+.+.+......-+.++..+.|++.++|.+-.+..+
T Consensus 160 ~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 160 KYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp HSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHH
Confidence 2234677888877643 222122334789999999999999999887321111110245678999999998755443
No 173
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.60 E-value=1.1e-06 Score=89.00 Aligned_cols=184 Identities=17% Similarity=0.208 Sum_probs=103.2
Q ss_pred CCCccccchHHHHHHHHHHhc---C---------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCC
Q 003203 32 QGYKSFESRKSILCDILDWLT---S---------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTAN 99 (839)
Q Consensus 32 ~~~~~fvgR~~~~~~l~~~l~---~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 99 (839)
....+++|.+...+++.+++. . ...+.+.|+|++|+|||++|+.+++.... ..+.++.+.-.+
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~~~~~~~~~ 77 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV-----PFLAMAGAEFVE 77 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----CEEEEETTTTSS
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEechHHHHh
Confidence 345678999888777766543 1 22356889999999999999999987642 123333332111
Q ss_pred HHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc--------------c---cccccccCCC--C
Q 003203 100 VKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI--------------D---LVTVGIPFGN--A 160 (839)
Q Consensus 100 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~--------------~---~~~l~~~l~~--~ 160 (839)
. . ..........+++......+.+|++||++... . +..+...+.. .
T Consensus 78 ~----------~-----~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 78 V----------I-----GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp S----------S-----TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred h----------c-----cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 0 0 00011222334444444567999999998641 0 1111111111 1
Q ss_pred CCCceEEEEeCchhhhhh-hc---CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchh-HHHHHH
Q 003203 161 HRGCKILLASRYRDILVS-EM---HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPL-AIVIVA 235 (839)
Q Consensus 161 ~~~s~iivTtr~~~~~~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~~ 235 (839)
..+..||.||........ .. .....+.++..+.++-.++++..+...............+++.+.|.+- .+..+.
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 235567777765543211 11 2246788999999999999998873322222222235678888888754 444443
No 174
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.56 E-value=1.4e-06 Score=90.85 Aligned_cols=188 Identities=16% Similarity=0.165 Sum_probs=112.6
Q ss_pred cccCCCCCccccchHHHHHHHHHHhc------------CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEE
Q 003203 27 WLRSNQGYKSFESRKSILCDILDWLT------------SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLA 94 (839)
Q Consensus 27 ~~~~~~~~~~fvgR~~~~~~l~~~l~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 94 (839)
...+......++|.+..+++|.+++. ....+-+.|+|++|+|||++|+.+++.... ..+.++.
T Consensus 10 ~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~v~~ 84 (322)
T 3eie_A 10 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS-----TFFSVSS 84 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC-----EEEEEEH
T ss_pred ecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC-----CEEEEch
Confidence 34455667889999999999998872 112357899999999999999999987642 1223322
Q ss_pred ecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc-------------ccccccc---CC
Q 003203 95 SSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID-------------LVTVGIP---FG 158 (839)
Q Consensus 95 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~-------------~~~l~~~---l~ 158 (839)
+ ++ ..... .........++......++.+|++|+++.... ...+... +.
T Consensus 85 ~------~l----~~~~~-----g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 149 (322)
T 3eie_A 85 S------DL----VSKWM-----GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG 149 (322)
T ss_dssp H------HH----HTTTG-----GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG
T ss_pred H------HH----hhccc-----chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc
Confidence 1 11 11100 11122334444444456778999999975411 1111111 11
Q ss_pred CCCCCceEEEEeCchhhhhh--hcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCc-hhHHHHHH
Q 003203 159 NAHRGCKILLASRYRDILVS--EMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGL-PLAIVIVA 235 (839)
Q Consensus 159 ~~~~~s~iivTtr~~~~~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plai~~~~ 235 (839)
....+..||.||........ .......+.++..+.++-.++++.++....... .......|++.+.|. +-.|..+.
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 150 NDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL-TKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp TSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC-CHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred ccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 23345666667776543210 112245778899999999999999886533221 133467888888875 54555444
No 175
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.56 E-value=5.4e-09 Score=111.33 Aligned_cols=154 Identities=16% Similarity=0.099 Sum_probs=113.0
Q ss_pred ccccceEEecCCCCCCCC-----CCC--CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccccc-----Cccc
Q 003203 383 LKNCSAVFLNDIKTGVLP-----EGL--EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSL-----PPSV 450 (839)
Q Consensus 383 ~~~~~~l~l~~~~~~~l~-----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-----p~~~ 450 (839)
.+.++.+++++|.+.... ..+ ..++|+.|++++|.....-...+...+++|++|+|++|.++.. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 456889999998874322 111 3468999999999753332333445567899999999998732 2223
Q ss_pred -cCCCCCcEEEccCCCcCC--C----cccCCCCCCCEEEccCCCCCC-----CchhhcCCCccCeEecCCCcCCCccCch
Q 003203 451 -HLLSNLQTLCLDQCVVGD--I----SIIGNLKKLEILSLVDSDIER-----LPNEIGQLTQLRCLDLSFCRNLKVIPPN 518 (839)
Q Consensus 451 -~~l~~L~~L~l~~~~~~~--~----~~~~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~~p~~ 518 (839)
...++|++|++++|.+.. . ..+..+++|++|+|++|.+.. ++..+...++|++|++++|. ++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHH
Confidence 356889999999998865 1 345778999999999998873 45667888999999999987 5543221
Q ss_pred ----hhcCccccCeEEccCCccc
Q 003203 519 ----VISKLTQLEELYMGNTSVK 537 (839)
Q Consensus 519 ----~l~~l~~L~~L~l~~~~~~ 537 (839)
.+...++|++|++++|.+.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHhCCCCCEEeccCCCCC
Confidence 2456789999999999875
No 176
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.55 E-value=3.6e-06 Score=87.44 Aligned_cols=187 Identities=16% Similarity=0.188 Sum_probs=110.7
Q ss_pred CCCCCccccchHHHHHHHHHHhc------------CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC
Q 003203 30 SNQGYKSFESRKSILCDILDWLT------------SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST 97 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 97 (839)
+.....+++|.+...+.|.+.+. ....+.+.|+|++|+|||++|+.+++.... ...+.++.+.-
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~~~l 82 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSSDL 82 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS----CEEEEEECCSS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC----CcEEEEEhHHH
Confidence 44556779999988888887763 112367899999999999999999987621 11233333221
Q ss_pred CCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc-------------ccccccc---CCCCC
Q 003203 98 ANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID-------------LVTVGIP---FGNAH 161 (839)
Q Consensus 98 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~-------------~~~l~~~---l~~~~ 161 (839)
.+ .. ..........++......++.+|++|+++.... ...+... +....
T Consensus 83 ~~--------------~~-~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 147 (322)
T 1xwi_A 83 VS--------------KW-LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 147 (322)
T ss_dssp CC--------------SS-CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCC
T ss_pred Hh--------------hh-hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccC
Confidence 10 00 111223344445544456789999999985410 0111111 11123
Q ss_pred CCceEEEEeCchhhhhh--hcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCc-hhHHHHHHH
Q 003203 162 RGCKILLASRYRDILVS--EMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGL-PLAIVIVAR 236 (839)
Q Consensus 162 ~~s~iivTtr~~~~~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plai~~~~~ 236 (839)
.+..||.||........ .......+.++..+.++-.++++.++....... .......|++.+.|. +-.|..+..
T Consensus 148 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 148 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL-TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp TTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC-CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45566667765532210 113346788999999999999999885432211 134467899999887 444555543
No 177
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.54 E-value=1.9e-06 Score=93.04 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=37.7
Q ss_pred CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccC-ccccCCCCCcEEEccC
Q 003203 404 EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLP-PSVHLLSNLQTLCLDQ 463 (839)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~ 463 (839)
+|.+|+.+.+..+ +..++...|.++.+|+.+++.++ +..++ ..+.++.+|+.+.+..
T Consensus 69 ~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 69 GCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp TCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred CCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence 6778888877533 56677777888888888888654 44443 3456666666665543
No 178
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.52 E-value=2e-06 Score=91.00 Aligned_cols=186 Identities=11% Similarity=0.089 Sum_probs=109.1
Q ss_pred CCCCCccccchHHHHHHHHHHhc------------CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC
Q 003203 30 SNQGYKSFESRKSILCDILDWLT------------SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST 97 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 97 (839)
++.....++|++..+++|.+.+. ....+.|.|+|++|+|||++|+.+++.... ..+.++.+.-
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l 153 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSL 153 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGG
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHh
Confidence 44556789999999999988874 123567899999999999999999876531 2344444322
Q ss_pred CCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc-------------ccccccccCC----CC
Q 003203 98 ANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI-------------DLVTVGIPFG----NA 160 (839)
Q Consensus 98 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~-------------~~~~l~~~l~----~~ 160 (839)
... . ..........+.......++.+|++|+++... ....+...+. ..
T Consensus 154 ~~~--------------~-~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 218 (357)
T 3d8b_A 154 TSK--------------W-VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSS 218 (357)
T ss_dssp CCS--------------S-TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----C
T ss_pred hcc--------------c-cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccC
Confidence 110 0 00011222333333334578899999995431 0111211111 12
Q ss_pred CCCceEEEEeCchhhh-hh-hcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCc-hhHHHHHHH
Q 003203 161 HRGCKILLASRYRDIL-VS-EMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGL-PLAIVIVAR 236 (839)
Q Consensus 161 ~~~s~iivTtr~~~~~-~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plai~~~~~ 236 (839)
..+..||.||...... .. .......+.++..+.++..+++...+...... -..+..+.|++.+.|. +-.+..+..
T Consensus 219 ~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 219 EDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC-LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC-ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2345566677654322 11 11223578899999999999998887432111 1134577899999984 556665543
No 179
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.51 E-value=5.9e-07 Score=94.67 Aligned_cols=188 Identities=10% Similarity=0.093 Sum_probs=112.2
Q ss_pred ccCCCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHH
Q 003203 28 LRSNQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEI 107 (839)
Q Consensus 28 ~~~~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 107 (839)
...|.....++|.+..++.|..++..++.+.+.++|+.|+||||+|+.+++.......-..+..++.+.......+. ++
T Consensus 18 k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir-~~ 96 (340)
T 1sxj_C 18 KYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVR-NQ 96 (340)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHH-TH
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHH-HH
Confidence 34566677899999999999999988776568999999999999999999886532110112233332222222221 11
Q ss_pred HHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCchh-hhhhhcCccc
Q 003203 108 ADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRYRD-ILVSEMHSQY 184 (839)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~~-~~~~~~~~~~ 184 (839)
...+...... ..+.+-++|+|+++.. ...+.+...+.......++|++|.... +.........
T Consensus 97 i~~~~~~~~~--------------~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~ 162 (340)
T 1sxj_C 97 IKDFASTRQI--------------FSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162 (340)
T ss_dssp HHHHHHBCCS--------------SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHHhhccc--------------CCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhce
Confidence 1111100000 0134678999999754 222333333322234567777776543 2221122345
Q ss_pred eEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHH
Q 003203 185 NYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAI 231 (839)
Q Consensus 185 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 231 (839)
.+++.+++.++..+.+.+.+......- .++..+.|++.++|.+-.+
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~~i-~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 163 RFRFQPLPQEAIERRIANVLVHEKLKL-SPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCB-CHHHHHHHHHHHTTCHHHH
T ss_pred eEeccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 789999999999999988773222111 1345778999999988643
No 180
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.47 E-value=1.4e-06 Score=91.81 Aligned_cols=178 Identities=12% Similarity=0.125 Sum_probs=108.0
Q ss_pred cCCCCCccccchHHHHHHHHHHhcC-----CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHH
Q 003203 29 RSNQGYKSFESRKSILCDILDWLTS-----PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRI 103 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 103 (839)
..|....+|+|++..++++..++.. ...+.|.|+|++|+|||++|+.+++..... .+.++.........
T Consensus 23 ~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~-----~~~~~~~~~~~~~~- 96 (338)
T 3pfi_A 23 LRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN-----IKTTAAPMIEKSGD- 96 (338)
T ss_dssp CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC-----EEEEEGGGCCSHHH-
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC-----eEEecchhccchhH-
Confidence 4455678899999999999988862 334578999999999999999998775321 23333322211111
Q ss_pred HHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccccCC------------------CCCCC
Q 003203 104 QDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI--DLVTVGIPFG------------------NAHRG 163 (839)
Q Consensus 104 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~------------------~~~~~ 163 (839)
....... ..+..+|++|+++... ....+...+. ...++
T Consensus 97 --------------------~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 97 --------------------LAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp --------------------HHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred --------------------HHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 1111111 2466788999987541 1111111110 11123
Q ss_pred ceEEEEeCchhhhh-h-hcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHHH
Q 003203 164 CKILLASRYRDILV-S-EMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIVA 235 (839)
Q Consensus 164 s~iivTtr~~~~~~-~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 235 (839)
.++|.+|....... . .......+.+++++.++..+++.+.+.... ..-..+..+.|++.+.|.|-.+..+.
T Consensus 155 ~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN-KTCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-CEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 56777776544221 0 112246899999999999999998874322 12224567788999999996554443
No 181
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.47 E-value=5.8e-07 Score=93.52 Aligned_cols=154 Identities=12% Similarity=0.079 Sum_probs=90.5
Q ss_pred cccchHHHHHHHHHHhc---------------CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCH
Q 003203 36 SFESRKSILCDILDWLT---------------SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANV 100 (839)
Q Consensus 36 ~fvgR~~~~~~l~~~l~---------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 100 (839)
.++|.+...+.+.+++. ......+.|+|++|+|||++|+.+++...........-++.++...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-- 109 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD-- 109 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH--
Confidence 58999988888887654 2334578999999999999999999887654332222233332110
Q ss_pred HHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc-----------cccccccccCCCCCCCceEEEE
Q 003203 101 KRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS-----------IDLVTVGIPFGNAHRGCKILLA 169 (839)
Q Consensus 101 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~s~iivT 169 (839)
+.... ...........+... +.-+|++|+++.. .....+...+.....+..||+|
T Consensus 110 ----------l~~~~-~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 110 ----------LVGQY-IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ----------TCCSS-TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ----------hhhhc-ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 00000 001111122222222 3458999999833 2223333333334456778888
Q ss_pred eCchhhhh-------hhcCccceEEccCCCHHHHHHHHHHHhC
Q 003203 170 SRYRDILV-------SEMHSQYNYCVSVLNKEEAWSLFKKMVG 205 (839)
Q Consensus 170 tr~~~~~~-------~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 205 (839)
|....... ........+.+++++.++-.+++...+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 86543210 0011236899999999999999988873
No 182
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.45 E-value=8.8e-07 Score=92.75 Aligned_cols=184 Identities=8% Similarity=0.008 Sum_probs=108.2
Q ss_pred cccCCCCCccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHH
Q 003203 27 WLRSNQGYKSFESRKSILCDILDWLTSPNV-NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQD 105 (839)
Q Consensus 27 ~~~~~~~~~~fvgR~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 105 (839)
....|....+++|++..++.+.+++..++. .++.+.|++|+|||++|+.+++... ..++.++.+.. .... .+
T Consensus 18 ~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~~-~~~~-i~ 90 (324)
T 3u61_B 18 QKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSDC-KIDF-VR 90 (324)
T ss_dssp HHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTTC-CHHH-HH
T ss_pred HhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEccccc-CHHH-HH
Confidence 344566778899999999999999986654 4677778899999999999988763 12445544332 2222 22
Q ss_pred HHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc---ccccccccCCCCCCCceEEEEeCchhhh-hhhcC
Q 003203 106 EIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI---DLVTVGIPFGNAHRGCKILLASRYRDIL-VSEMH 181 (839)
Q Consensus 106 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~---~~~~l~~~l~~~~~~s~iivTtr~~~~~-~~~~~ 181 (839)
+.+........ ..+++-++|+||++... ..+.+...+.....+.++|+||....-. .....
T Consensus 91 ~~~~~~~~~~~---------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s 155 (324)
T 3u61_B 91 GPLTNFASAAS---------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS 155 (324)
T ss_dssp THHHHHHHBCC---------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH
T ss_pred HHHHHHHhhcc---------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh
Confidence 22211110000 01377899999998653 2333333322223467788888765421 10111
Q ss_pred ccceEEccCCCHHHHHHHHH-------HHhCCCCCCcchHHHHHHHHHHhCCchhHHH
Q 003203 182 SQYNYCVSVLNKEEAWSLFK-------KMVGDYVEDSDLESIAIQVANECGGLPLAIV 232 (839)
Q Consensus 182 ~~~~~~l~~L~~~ea~~Lf~-------~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 232 (839)
....+++++++.++-.+++. ..+......-+..+..+.|++.++|.+-.+.
T Consensus 156 R~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 156 RCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHH
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHH
Confidence 23579999999888544332 2222111111112567789999998876433
No 183
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.44 E-value=1.3e-06 Score=93.40 Aligned_cols=196 Identities=8% Similarity=0.039 Sum_probs=103.6
Q ss_pred CccccchHHHHHH---HHHHhcCCCe--eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec----CCCHHHHH
Q 003203 34 YKSFESRKSILCD---ILDWLTSPNV--NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS----TANVKRIQ 104 (839)
Q Consensus 34 ~~~fvgR~~~~~~---l~~~l~~~~~--~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~----~~~~~~~~ 104 (839)
...|+|++...+. +.+.+..+.. +.+.|+|++|+|||++|+.+++.......| +.+.... .....+..
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchhHHH
Confidence 6789999988766 4555554443 589999999999999999999987532121 2222111 12233333
Q ss_pred HHHHHHh-hhh-----------------------------ccCCCchHHHHHHH----HHH-HcCC----cEEEEEeCCC
Q 003203 105 DEIADQL-CLE-----------------------------LCKGTESERARTLF----DRL-WKEN----KILVILDDIC 145 (839)
Q Consensus 105 ~~i~~~l-~~~-----------------------------~~~~~~~~~~~~~~----~~l-~~~~----~~LlVlDdv~ 145 (839)
.+..... +.. .............. ... ..++ +.+|++|+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 3332221 000 00000011111111 111 1233 3499999998
Q ss_pred Cc--cccccccccCCCCCCCceEEEEeCc------------h-hhhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCC
Q 003203 146 TS--IDLVTVGIPFGNAHRGCKILLASRY------------R-DILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVED 210 (839)
Q Consensus 146 ~~--~~~~~l~~~l~~~~~~s~iivTtr~------------~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 210 (839)
.. +....+...+..... ..++++|.. . .+..........+.+++++.++..+++.+.+......
T Consensus 200 ~l~~~~~~~L~~~le~~~~-~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~ 278 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMA-PVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVE 278 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTC-CEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCC
T ss_pred ccChHHHHHHHHHhhCcCC-CeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 65 222333333322222 234444431 1 1111112233458999999999999999887432211
Q ss_pred cchHHHHHHHHHHhC-CchhHHHHH
Q 003203 211 SDLESIAIQVANECG-GLPLAIVIV 234 (839)
Q Consensus 211 ~~~~~~~~~I~~~~~-G~Plai~~~ 234 (839)
-.++..+.|++.+. |.|-.+..+
T Consensus 279 -~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 279 -MSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp -BCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred -CCHHHHHHHHHHhcCCCHHHHHHH
Confidence 22456778899987 777654443
No 184
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.43 E-value=4.5e-06 Score=88.06 Aligned_cols=186 Identities=16% Similarity=0.178 Sum_probs=108.8
Q ss_pred cCCCCCccccchHHHHHHHHHHhc------------CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec
Q 003203 29 RSNQGYKSFESRKSILCDILDWLT------------SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS 96 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 96 (839)
.++.....++|.+..++.|.+.+. ....+-|.|+|++|+|||++|+.+++.... ..+.++.+
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-----~~~~v~~~- 118 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS-----TFFSVSSS- 118 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC-----EEEEEEHH-
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----CEEEeeHH-
Confidence 344566789999999999988873 112345889999999999999999988742 12223221
Q ss_pred CCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc-------------cccccccC---CCC
Q 003203 97 TANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID-------------LVTVGIPF---GNA 160 (839)
Q Consensus 97 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~-------------~~~l~~~l---~~~ 160 (839)
++ ... . ..........++......++.+|++|+++.... ...+...+ ...
T Consensus 119 -----~l----~~~----~-~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~ 184 (355)
T 2qp9_X 119 -----DL----VSK----W-MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND 184 (355)
T ss_dssp -----HH----HSC----C----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC--
T ss_pred -----HH----hhh----h-cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc
Confidence 11 110 0 011223334444444446789999999985421 11121111 112
Q ss_pred CCCceEEEEeCchhhhh--hhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCc-hhHHHHHH
Q 003203 161 HRGCKILLASRYRDILV--SEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGL-PLAIVIVA 235 (839)
Q Consensus 161 ~~~s~iivTtr~~~~~~--~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plai~~~~ 235 (839)
..+..||.||....... ........+.++..+.++-.+++..++....... .......|++.+.|. +-.|..+.
T Consensus 185 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~-~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 185 SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL-TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp -CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34566666776553221 0113346788999999999999999885432211 133467899999885 54455544
No 185
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.43 E-value=8.8e-06 Score=87.29 Aligned_cols=186 Identities=16% Similarity=0.144 Sum_probs=107.2
Q ss_pred cCCCCCccccchHHHHHHHHHHhc------------CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec
Q 003203 29 RSNQGYKSFESRKSILCDILDWLT------------SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS 96 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 96 (839)
.++....+++|++..++.|.+++. ....+.+.|+|++|+|||++|+.+++.... ..+.++.+.
T Consensus 109 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~ 183 (389)
T 3vfd_A 109 GTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAAS 183 (389)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCC
T ss_pred CCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHH
Confidence 345556789999999999999883 122468899999999999999999876531 233333322
Q ss_pred CCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc-------------cccccccC---C-C
Q 003203 97 TANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID-------------LVTVGIPF---G-N 159 (839)
Q Consensus 97 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~-------------~~~l~~~l---~-~ 159 (839)
-.. .. ..........++.......+.+|+||+++.... ...+...+ . .
T Consensus 184 l~~--~~-------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 248 (389)
T 3vfd_A 184 LTS--KY-------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA 248 (389)
T ss_dssp C----------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC--
T ss_pred hhc--cc-------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc
Confidence 111 00 001112233344444345678999999975410 01111111 1 1
Q ss_pred CCCCceEEEEeCchhhhh-hh-cCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchh-HHHHHH
Q 003203 160 AHRGCKILLASRYRDILV-SE-MHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPL-AIVIVA 235 (839)
Q Consensus 160 ~~~~s~iivTtr~~~~~~-~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~~ 235 (839)
......||.||....... .. ......+.+...+.++-.+++...+...... -..+....|++.+.|..- ++..+.
T Consensus 249 ~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 249 GDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP-LTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp ---CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC-SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 123455666676543221 11 1223568899999999999999888543222 123456789999988644 555543
No 186
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.41 E-value=1.4e-06 Score=94.59 Aligned_cols=185 Identities=16% Similarity=0.174 Sum_probs=105.8
Q ss_pred CCcccc-chHH--HHHHHHHHhcCCC-eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHH
Q 003203 33 GYKSFE-SRKS--ILCDILDWLTSPN-VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIA 108 (839)
Q Consensus 33 ~~~~fv-gR~~--~~~~l~~~l~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 108 (839)
....|+ |... ....+......++ ...+.|+|++|+||||||+.+++.......-..+++++... +..++.
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~------~~~~~~ 176 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK------FLNDLV 176 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH------HHHHHH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH------HHHHHH
Confidence 446777 6433 3344444444433 56889999999999999999999876542122355554332 333444
Q ss_pred HHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc----ccccccccCCC-CCCCceEEEEeCchhh--------
Q 003203 109 DQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI----DLVTVGIPFGN-AHRGCKILLASRYRDI-------- 175 (839)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~----~~~~l~~~l~~-~~~~s~iivTtr~~~~-------- 175 (839)
..+... . ...+...+ ..+.-+|++||++... ..+.+...+.. ...|..||+||....-
T Consensus 177 ~~~~~~----~----~~~~~~~~-~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~ 247 (440)
T 2z4s_A 177 DSMKEG----K----LNEFREKY-RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_dssp HHHHTT----C----HHHHHHHH-TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHH
T ss_pred HHHHcc----c----HHHHHHHh-cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHH
Confidence 333221 0 11222223 1256799999997542 11222222211 2356788888886321
Q ss_pred hhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHH
Q 003203 176 LVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVI 233 (839)
Q Consensus 176 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 233 (839)
..........+.+++++.++-.+++.+.+...... -.+++...|++.++|.+-.+.-
T Consensus 248 L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~-i~~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 248 LVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGE-LPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCC-CCTTHHHHHHHHCCSCHHHHHH
T ss_pred HHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhcCCCHHHHHH
Confidence 11112223578899999999999999887321110 0123467888999998865443
No 187
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.40 E-value=7.6e-06 Score=84.40 Aligned_cols=186 Identities=13% Similarity=0.113 Sum_probs=107.2
Q ss_pred cCCCCCccccchHHHHHHHHHHhcC------------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec
Q 003203 29 RSNQGYKSFESRKSILCDILDWLTS------------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS 96 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 96 (839)
.++.....++|.+..++.+.+++.. ...+.+.|+|++|+||||+|+.+++.... ..+.++.+.
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~ 89 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAAS 89 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTT
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHH
Confidence 3455667899999999999888731 23468899999999999999999887631 123333322
Q ss_pred CCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcccc-------------cccc---ccCCC-
Q 003203 97 TANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSIDL-------------VTVG---IPFGN- 159 (839)
Q Consensus 97 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~~-------------~~l~---~~l~~- 159 (839)
... .. ..........+.......++.+|++|+++....- ..+. ..+..
T Consensus 90 l~~--------------~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 154 (297)
T 3b9p_A 90 LTS--------------KY-VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN 154 (297)
T ss_dssp TSS--------------SS-CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--
T ss_pred Hhh--------------cc-cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc
Confidence 110 00 0111222333444444457889999999754110 0111 11111
Q ss_pred -CCCCceEEEEeCchhhhh-h-hcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchh-HHHHHH
Q 003203 160 -AHRGCKILLASRYRDILV-S-EMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPL-AIVIVA 235 (839)
Q Consensus 160 -~~~~s~iivTtr~~~~~~-~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~~ 235 (839)
.+.+..||.||....... . .......+.++..+.++-.+++...+......- ..+....+++.+.|.+- ++..+.
T Consensus 155 ~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 155 PDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPL-DTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp ----CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCS-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 123456677777653221 0 011235677888888888888888774322111 13456788999999875 554443
No 188
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.39 E-value=3.1e-06 Score=88.60 Aligned_cols=168 Identities=11% Similarity=0.046 Sum_probs=105.7
Q ss_pred HHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHHHHhc--------------------cCCeEEEEEEecCCC
Q 003203 41 KSILCDILDWLTSPNV-NMIGVYGIGGVGKTALMHEVLFEAKKQN--------------------LFDQVIFVLASSTAN 99 (839)
Q Consensus 41 ~~~~~~l~~~l~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~~~~~~ 99 (839)
++..+.+.+.+..++. ..+.++|+.|+|||++|+.+++...... +++ ..++.....
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~-- 84 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKG-- 84 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTT--
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEecccc--
Confidence 5567778888876664 4689999999999999999998875321 122 223322100
Q ss_pred HHHHHHHHHHHhhhhccCCCchHHHHHHHHHHH----cCCcEEEEEeCCCCcc--ccccccccCCCCCCCceEEEEeCch
Q 003203 100 VKRIQDEIADQLCLELCKGTESERARTLFDRLW----KENKILVILDDICTSI--DLVTVGIPFGNAHRGCKILLASRYR 173 (839)
Q Consensus 100 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTtr~~ 173 (839)
......+.++.+.+.+. .+++-++|+|+++... ..+.+...+.....++.+|++|.+.
T Consensus 85 ----------------~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 85 ----------------KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp ----------------CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred ----------------CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 00111222333333332 2467889999998652 3344444444444567777777765
Q ss_pred h-hhhhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHH
Q 003203 174 D-ILVSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVI 233 (839)
Q Consensus 174 ~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 233 (839)
. +..........+++++++.++..+.+.+... .+ ++.+..+++.++|.|..+..
T Consensus 149 ~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~---~~---~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 149 ERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT---MS---QDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC---CC---HHHHHHHHHHTTTCHHHHHH
T ss_pred HhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC---CC---HHHHHHHHHHcCCCHHHHHH
Confidence 4 3332334456899999999999999988761 11 34467899999999976544
No 189
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.38 E-value=9e-07 Score=84.25 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=45.6
Q ss_pred CCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 31 NQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 31 ~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
+.....|+||+++++++.+++.....+.+.|+|++|+|||++|+.+++....
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4556779999999999999998766678899999999999999999988753
No 190
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.38 E-value=1.8e-06 Score=94.70 Aligned_cols=153 Identities=13% Similarity=0.161 Sum_probs=89.7
Q ss_pred CCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccC----C-eEEEEEEecCCCHHHHHH
Q 003203 31 NQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLF----D-QVIFVLASSTANVKRIQD 105 (839)
Q Consensus 31 ~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f----~-~~~wv~~~~~~~~~~~~~ 105 (839)
+....+++||+.+++++...+......-+.|+|++|+|||++|+.+++.......- + .++.++.+.
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~--------- 246 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT--------- 246 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred cCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc---------
Confidence 34456799999999999999986656677899999999999999999987532110 1 133333330
Q ss_pred HHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccccccccccCCCCCCCceEEEEeCchhh------hhhh
Q 003203 106 EIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSIDLVTVGIPFGNAHRGCKILLASRYRDI------LVSE 179 (839)
Q Consensus 106 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~~------~~~~ 179 (839)
... .........++......++.+|++| ...+....+...+. ....++|.+|..... ....
T Consensus 247 ----~~~-----g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al 313 (468)
T 3pxg_A 247 ----KYR-----GEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAAL 313 (468)
T ss_dssp ---------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred ----ccc-----chHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHH
Confidence 000 0001122344455545577899999 22222222333332 224566666665541 1111
Q ss_pred cCccceEEccCCCHHHHHHHHHHHhC
Q 003203 180 MHSQYNYCVSVLNKEEAWSLFKKMVG 205 (839)
Q Consensus 180 ~~~~~~~~l~~L~~~ea~~Lf~~~~~ 205 (839)
......+.+++.+.++..+++.....
T Consensus 314 ~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 314 ERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp HHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HHhCccceeCCCCHHHHHHHHHHHHH
Confidence 12234799999999999999998773
No 191
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.38 E-value=1e-05 Score=88.11 Aligned_cols=187 Identities=16% Similarity=0.175 Sum_probs=109.7
Q ss_pred cCCCCCccccchHHHHHHHHHHhc------------CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec
Q 003203 29 RSNQGYKSFESRKSILCDILDWLT------------SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS 96 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 96 (839)
.++.....++|.+...+.|.+.+. ....+.|.|+|++|+|||++|+.+++.... .-++.++.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~------~~~~~v~~ 201 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN------STFFSISS 201 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS------SEEEEECC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC------CCEEEEeH
Confidence 445556789999999999988773 123467899999999999999999987621 11333332
Q ss_pred CCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc-------------ccccccccCCC---C
Q 003203 97 TANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI-------------DLVTVGIPFGN---A 160 (839)
Q Consensus 97 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~-------------~~~~l~~~l~~---~ 160 (839)
.. +... ..+. .......++......++.+|++|+++... ....+...+.. .
T Consensus 202 ~~----l~~~---~~g~------~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 268 (444)
T 2zan_A 202 SD----LVSK---WLGE------SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD 268 (444)
T ss_dssp C----------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCC
T ss_pred HH----HHhh---hcch------HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccC
Confidence 21 1100 0110 01112334444444578899999998541 01112222221 2
Q ss_pred CCCceEEEEeCchhhhhh--hcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCc-hhHHHHHH
Q 003203 161 HRGCKILLASRYRDILVS--EMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGL-PLAIVIVA 235 (839)
Q Consensus 161 ~~~s~iivTtr~~~~~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plai~~~~ 235 (839)
..+..||.||........ .......+.++..+.++-.++|+.++....... .......|++.+.|. +-.|..+.
T Consensus 269 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 269 NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL-TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355667777766543210 112345788888899999999999885432111 134467899999885 44555544
No 192
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.36 E-value=5.2e-06 Score=85.52 Aligned_cols=179 Identities=12% Similarity=0.183 Sum_probs=104.8
Q ss_pred CCCCCccccchHHHHHHHHHHhcC-------------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec
Q 003203 30 SNQGYKSFESRKSILCDILDWLTS-------------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS 96 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 96 (839)
+.....+++|.+..+++|.+++.. ...+.+.|+|++|+|||++|+.+++.... ..+.+ +
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-----~~i~v--~- 81 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISI--K- 81 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----EEEEE--C-
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC-----CEEEE--E-
Confidence 344556799999888888877641 33467899999999999999999987641 12222 2
Q ss_pred CCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc----------------cccccccCC--
Q 003203 97 TANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID----------------LVTVGIPFG-- 158 (839)
Q Consensus 97 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~----------------~~~l~~~l~-- 158 (839)
..++.... .+. . ......++.......+.+|++|+++.... ...+...+.
T Consensus 82 ---~~~l~~~~---~g~-----~-~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~ 149 (301)
T 3cf0_A 82 ---GPELLTMW---FGE-----S-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 149 (301)
T ss_dssp ---HHHHHHHH---HTT-----C-TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS
T ss_pred ---hHHHHhhh---cCc-----h-HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc
Confidence 22222211 111 1 12233444444445789999999974210 111211111
Q ss_pred CCCCCceEEEEeCchhhhh-hhc---CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhH
Q 003203 159 NAHRGCKILLASRYRDILV-SEM---HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLA 230 (839)
Q Consensus 159 ~~~~~s~iivTtr~~~~~~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 230 (839)
....+..||.||....... ... .....+.++..+.++-.++++..+.......+.. ...+++.+.|.|-+
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~--~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 150 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD--LEFLAKMTNGFSGA 223 (301)
T ss_dssp CTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHTCSSCCHH
T ss_pred cCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch--HHHHHHHcCCCCHH
Confidence 1224567777777654321 111 2245789999999999999988884432211111 34566677777654
No 193
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.35 E-value=3.6e-07 Score=96.24 Aligned_cols=138 Identities=19% Similarity=0.213 Sum_probs=76.0
Q ss_pred hhhcCCCCccEEEeCCCcccccCccccCCCCCcEEEccCCCcCC--CcccC--CCCCCCEEEccCC--C------CCCCc
Q 003203 425 NFFTGMSKLRGLALSEMQLLSLPPSVHLLSNLQTLCLDQCVVGD--ISIIG--NLKKLEILSLVDS--D------IERLP 492 (839)
Q Consensus 425 ~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~--~~~~~--~l~~L~~L~l~~~--~------l~~lp 492 (839)
.++..+++|+.|+++++.-..++. + .+++|++|++..|.+.. +..+. .+++|++|+|+.+ . +..+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 344667777777777663224443 3 26777777777776544 22332 5777777777421 1 21222
Q ss_pred hhh--cCCCccCeEecCCCcCCCccCchhh--cCccccCeEEccCCccccccccccccccccchhhhccCCCCCEEEEEe
Q 003203 493 NEI--GQLTQLRCLDLSFCRNLKVIPPNVI--SKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQI 568 (839)
Q Consensus 493 ~~i--~~l~~L~~L~l~~~~~l~~~p~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~ 568 (839)
..+ ..+++|++|++.+|......+.... ..+++|++|+++.|.+... ........+..+++|+.|+++.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~-------G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE-------GARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH-------HHHHHHTTHHHHTTCSEEECCS
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH-------HHHHHHhhcccCCcceEEECCC
Confidence 222 2467788888877653222222111 2567788888877765310 0112233445677788888876
Q ss_pred ccc
Q 003203 569 QDA 571 (839)
Q Consensus 569 ~~~ 571 (839)
|.+
T Consensus 317 n~i 319 (362)
T 2ra8_A 317 NYL 319 (362)
T ss_dssp BBC
T ss_pred CcC
Confidence 654
No 194
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.35 E-value=5.3e-06 Score=86.79 Aligned_cols=178 Identities=16% Similarity=0.180 Sum_probs=108.2
Q ss_pred CCCCCccccchHHHHHHHHHHhc-------------CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec
Q 003203 30 SNQGYKSFESRKSILCDILDWLT-------------SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS 96 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~-------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 96 (839)
|.....++.|-++..++|.+.+. -...+-|.++|++|.|||.+|+++++..... .+.+..+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~ 217 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAE 217 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGG
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHH
Confidence 44456778899988888877764 1224668899999999999999999987532 23333222
Q ss_pred CCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc----------------cccccccCC--
Q 003203 97 TANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID----------------LVTVGIPFG-- 158 (839)
Q Consensus 97 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~----------------~~~l~~~l~-- 158 (839)
-.+ .. .......++.++.......+.+|++|+++.... +..+...+.
T Consensus 218 l~s--------------k~-vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 218 LVQ--------------KY-IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp GSC--------------SS-TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred hhc--------------cc-cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 110 00 011122334455555556899999999974310 111111111
Q ss_pred CCCCCceEEEEeCchhhhhhh-c---CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchh
Q 003203 159 NAHRGCKILLASRYRDILVSE-M---HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPL 229 (839)
Q Consensus 159 ~~~~~s~iivTtr~~~~~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl 229 (839)
....+..||.||...+....+ . ..+..+.++.-+.++-.++|+.+........+.. ..+|++.+.|.--
T Consensus 283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd--l~~lA~~t~G~SG 355 (405)
T 4b4t_J 283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN--LRKVAEKMNGCSG 355 (405)
T ss_dssp TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC--HHHHHHHCCSCCH
T ss_pred CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC--HHHHHHHCCCCCH
Confidence 123455677777766543111 1 3357899999999999999998885533332221 4578888888643
No 195
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.27 E-value=2.1e-06 Score=92.57 Aligned_cols=65 Identities=12% Similarity=0.108 Sum_probs=48.8
Q ss_pred CCCCChhhhcCCCCccEEEeCCCcccccC-ccccCCCCCcEEEccCCCcCC--CcccCCCCCCCEEEccC
Q 003203 419 FFKMPENFFTGMSKLRGLALSEMQLLSLP-PSVHLLSNLQTLCLDQCVVGD--ISIIGNLKKLEILSLVD 485 (839)
Q Consensus 419 ~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~ 485 (839)
+..+....|.++.+|+.+.+..+ ++.++ ..+.++.+|+.+++..+ +.. ...+.++.+|+.+.+..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence 35677888999999999999754 66664 46888999999999765 333 35677788887766654
No 196
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=2e-05 Score=82.72 Aligned_cols=178 Identities=13% Similarity=0.169 Sum_probs=106.2
Q ss_pred cCCCCCccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEe
Q 003203 29 RSNQGYKSFESRKSILCDILDWLT----S---------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLAS 95 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~----~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 95 (839)
.|.....++.|-++..++|.+.+. . ...+-|.++|++|.|||.+|+++++..... .+.++.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~-----fi~v~~s 250 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT-----FLRIVGS 250 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE-----EEEEESG
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC-----EEEEEHH
Confidence 445556788899888888877664 1 224678999999999999999999987532 2233222
Q ss_pred cCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc----------------cccccccCC-
Q 003203 96 STANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID----------------LVTVGIPFG- 158 (839)
Q Consensus 96 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~----------------~~~l~~~l~- 158 (839)
.-.+ . ........+..++.......+.+|++|+++.... +..+...+.
T Consensus 251 ~l~s--------------k-~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg 315 (437)
T 4b4t_I 251 ELIQ--------------K-YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 315 (437)
T ss_dssp GGCC--------------S-SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred Hhhh--------------c-cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence 2110 0 0111122334445545456889999999874310 011111111
Q ss_pred -CCCCCceEEEEeCchhhhhhhc----CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCch
Q 003203 159 -NAHRGCKILLASRYRDILVSEM----HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLP 228 (839)
Q Consensus 159 -~~~~~s~iivTtr~~~~~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~P 228 (839)
....+..||.||...+....+. ..+..+.++.-+.++-.++|+.+........+.. .+.|++.+.|.-
T Consensus 316 ~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd--l~~LA~~T~GfS 388 (437)
T 4b4t_I 316 FDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN--LETLVTTKDDLS 388 (437)
T ss_dssp CCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC--HHHHHHHCCSCC
T ss_pred cCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC--HHHHHHhCCCCC
Confidence 1234556777777666542122 2245688888888888999988885433222211 457788888764
No 197
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.27 E-value=3e-06 Score=100.61 Aligned_cols=159 Identities=14% Similarity=0.182 Sum_probs=92.5
Q ss_pred CCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhcc-----CCeEEEEEEecCCCHHHHHH
Q 003203 31 NQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNL-----FDQVIFVLASSTANVKRIQD 105 (839)
Q Consensus 31 ~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~ 105 (839)
+....+++||++++.++.+.+.....+.+.|+|++|+||||+|+.+++....... -..+++++++.-..
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------ 239 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------ 239 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------
T ss_pred cCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc------
Confidence 4455779999999999999998766667899999999999999999998754211 11244443322110
Q ss_pred HHHHHhhhhccCCCchHHHHHHHHHHHc-CCcEEEEEeCCCCccc-------cc---cccccCCCCCCCceEEEEeCchh
Q 003203 106 EIADQLCLELCKGTESERARTLFDRLWK-ENKILVILDDICTSID-------LV---TVGIPFGNAHRGCKILLASRYRD 174 (839)
Q Consensus 106 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~-~~~~LlVlDdv~~~~~-------~~---~l~~~l~~~~~~s~iivTtr~~~ 174 (839)
+ .............+.+.... +++.+|++|+++.... ++ .+...+ ...+..+|.+|....
T Consensus 240 ------g-~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l--~~~~i~~I~at~~~~ 310 (854)
T 1qvr_A 240 ------G-AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL--ARGELRLIGATTLDE 310 (854)
T ss_dssp -------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH--HTTCCCEEEEECHHH
T ss_pred ------c-CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH--hCCCeEEEEecCchH
Confidence 0 00011222334445555543 3689999999975420 11 111111 113445666666543
Q ss_pred h-----hhhhcCccceEEccCCCHHHHHHHHHHHh
Q 003203 175 I-----LVSEMHSQYNYCVSVLNKEEAWSLFKKMV 204 (839)
Q Consensus 175 ~-----~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 204 (839)
. ..........+.+++.+.++..++++...
T Consensus 311 ~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 311 YREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred HhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 2 11112223468999999999999997654
No 198
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.26 E-value=1.2e-05 Score=83.93 Aligned_cols=178 Identities=17% Similarity=0.132 Sum_probs=100.4
Q ss_pred CCCcccc-ch--HHHHHHHHHHhcCC--CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHH
Q 003203 32 QGYKSFE-SR--KSILCDILDWLTSP--NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDE 106 (839)
Q Consensus 32 ~~~~~fv-gR--~~~~~~l~~~l~~~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 106 (839)
...+.|+ |. ......+..+...+ ....+.|+|++|+||||||+.+++..... -..+++++.. .+...
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~------~~~~~ 79 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSAD------DFAQA 79 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHH------HHHHH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHH------HHHHH
Confidence 4456676 43 33344555555543 34678999999999999999999987643 1234555432 23333
Q ss_pred HHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc----cccccccCCC-CCCCceEEEEeCchhhh-----
Q 003203 107 IADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID----LVTVGIPFGN-AHRGCKILLASRYRDIL----- 176 (839)
Q Consensus 107 i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~----~~~l~~~l~~-~~~~s~iivTtr~~~~~----- 176 (839)
+...+... . ......... +.-+|++||++.... .+.+...+.. ...+.+||+||......
T Consensus 80 ~~~~~~~~-----~---~~~~~~~~~--~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 80 MVEHLKKG-----T---INEFRNMYK--SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHHHHT-----C---HHHHHHHHH--TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHHHcC-----c---HHHHHHHhc--CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 33333211 0 112222232 467899999975431 1222222111 12456788888644211
Q ss_pred ---hhhcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhH
Q 003203 177 ---VSEMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLA 230 (839)
Q Consensus 177 ---~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 230 (839)
.........+++++ +.++..+++...+..... .-.++..+.|++.+ |..-.
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~-~l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL-ELRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHC-SSHHH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhC-CCHHH
Confidence 11112225789999 999999999988732111 11245577888888 77643
No 199
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=5e-06 Score=88.51 Aligned_cols=178 Identities=12% Similarity=0.181 Sum_probs=105.1
Q ss_pred cCCCCCccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEe
Q 003203 29 RSNQGYKSFESRKSILCDILDWLT----S---------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLAS 95 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~----~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 95 (839)
.|.....++.|-++..++|.+.+. . ...+-|.++|++|+|||.+|+++++..... .+.++.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s 249 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAP 249 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGG
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehh
Confidence 455567889999999988887753 1 234678999999999999999999987532 2333322
Q ss_pred cCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc-------cc---------cccccccCCC
Q 003203 96 STANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS-------ID---------LVTVGIPFGN 159 (839)
Q Consensus 96 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~-------~~---------~~~l~~~l~~ 159 (839)
.-.+ .. .......+..++.......+.+|++|+++.. .. ...+...+..
T Consensus 250 ~l~~--------------~~-vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg 314 (434)
T 4b4t_M 250 QLVQ--------------MY-IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG 314 (434)
T ss_dssp GGCS--------------SC-SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT
T ss_pred hhhh--------------cc-cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhc
Confidence 2110 00 0111122334444444457899999998632 00 1112222221
Q ss_pred --CCCCceEEEEeCchhhhhhhc----CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCch
Q 003203 160 --AHRGCKILLASRYRDILVSEM----HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLP 228 (839)
Q Consensus 160 --~~~~s~iivTtr~~~~~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~P 228 (839)
...+..||.||...+....+. .....+.++.-+.++-.++|+.+........+.. ..+|++.+.|.-
T Consensus 315 ~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd--l~~lA~~t~G~s 387 (434)
T 4b4t_M 315 FSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN--WQELARSTDEFN 387 (434)
T ss_dssp SCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC--HHHHHHHCSSCC
T ss_pred cCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC--HHHHHHhCCCCC
Confidence 224456666777665432121 2346788988899888899987773322222211 457888888763
No 200
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.26 E-value=3.1e-07 Score=84.48 Aligned_cols=68 Identities=18% Similarity=0.305 Sum_probs=31.9
Q ss_pred ccCCCCEEEEecCCCcccccchhhhhc----CCCccEEEEecccchHHHhhcccCCccccCCCccccccccceeeccccc
Q 003203 704 SFCNLKIIKVRNCDRLKNVFSFSIARG----LPQLQTITVIKCKNVEEIFMMERDGYVDCKEVNKIEFSQLRSLTLKFLP 779 (839)
Q Consensus 704 ~~~~L~~L~i~~c~~L~~l~~~~~~~~----l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 779 (839)
.+++|+.|++++|..+++..... +.. .++|++|+|++|+++++-.... +..+++|++|+|++||
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~~-L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~-----------L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLER-LSQLENLQKSMLEMEIISCGNVTDKGIIA-----------LHHFRNLKYLFLSDLP 150 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHHH-HHTCHHHHHHCCEEEEESCTTCCHHHHHH-----------GGGCTTCCEEEEESCT
T ss_pred CCCCCCEEEeCCCCccCHHHHHH-HHhcccccCCCCEEEcCCCCcCCHHHHHH-----------HhcCCCCCEEECCCCC
Confidence 34555555555555555432211 111 2345555555555555432211 1235555555555555
Q ss_pred cccc
Q 003203 780 RLRS 783 (839)
Q Consensus 780 ~L~~ 783 (839)
+++.
T Consensus 151 ~Itd 154 (176)
T 3e4g_A 151 GVKE 154 (176)
T ss_dssp TCCC
T ss_pred CCCc
Confidence 5544
No 201
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.24 E-value=1.8e-05 Score=83.81 Aligned_cols=177 Identities=15% Similarity=0.195 Sum_probs=105.6
Q ss_pred CCCCCccccchHHHHHHHHHHhc-------------CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec
Q 003203 30 SNQGYKSFESRKSILCDILDWLT-------------SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS 96 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~-------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 96 (839)
|.....++.|-++..++|.+.+. -...+-|.++|++|+|||++|+++++..... .+.+..+.
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~ 278 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSE 278 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGG
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHH
Confidence 34455778999988888877653 1235678999999999999999999987532 23333222
Q ss_pred CCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc----------------cccccccCC--
Q 003203 97 TANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID----------------LVTVGIPFG-- 158 (839)
Q Consensus 97 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~----------------~~~l~~~l~-- 158 (839)
-.+ . ........++.++.......+.+|++|+++.... ...+...+.
T Consensus 279 L~s--------------k-~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 343 (467)
T 4b4t_H 279 LVQ--------------K-YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF 343 (467)
T ss_dssp GCC--------------C-SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS
T ss_pred hhc--------------c-cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc
Confidence 110 0 0011122334444444456899999999974310 001111111
Q ss_pred CCCCCceEEEEeCchhhhhhh-c---CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCch
Q 003203 159 NAHRGCKILLASRYRDILVSE-M---HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLP 228 (839)
Q Consensus 159 ~~~~~s~iivTtr~~~~~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~P 228 (839)
....+..||.||...+....+ . .....++++.-+.++-.++|+.+........+.. .+.|++.+.|.-
T Consensus 344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd--l~~LA~~T~GfS 415 (467)
T 4b4t_H 344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR--WELISRLCPNST 415 (467)
T ss_dssp CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHHCCSCC
T ss_pred CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHCCCCC
Confidence 122345566677665543111 1 3356888998899999999998885433222221 457888888864
No 202
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=3e-05 Score=82.61 Aligned_cols=178 Identities=15% Similarity=0.219 Sum_probs=106.1
Q ss_pred cCCCCCccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEe
Q 003203 29 RSNQGYKSFESRKSILCDILDWLT----S---------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLAS 95 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~----~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 95 (839)
.|.....++.|-++..++|.+.+. . ...+-|.++|++|+|||++|+++++..... .+.+..+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s 249 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPAS 249 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGG
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehh
Confidence 344456778899888888877764 1 234678999999999999999999987532 2333332
Q ss_pred cCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc----------------cccccccCC-
Q 003203 96 STANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID----------------LVTVGIPFG- 158 (839)
Q Consensus 96 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~----------------~~~l~~~l~- 158 (839)
.-.+ .. .......+..++.......+.+|++|+++.... +..+...+.
T Consensus 250 ~l~s--------------k~-~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 314 (437)
T 4b4t_L 250 GIVD--------------KY-IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDG 314 (437)
T ss_dssp GTCC--------------SS-SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHS
T ss_pred hhcc--------------cc-chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhc
Confidence 2111 00 011122333444444456899999999974310 111111111
Q ss_pred -CCCCCceEEEEeCchhhhhhh-cC---ccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCch
Q 003203 159 -NAHRGCKILLASRYRDILVSE-MH---SQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLP 228 (839)
Q Consensus 159 -~~~~~s~iivTtr~~~~~~~~-~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~P 228 (839)
....+..||.||...+....+ .. ....+.++.-+.++-.++|+.+........+.. ...|++.+.|.-
T Consensus 315 ~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d--l~~lA~~t~G~s 387 (437)
T 4b4t_L 315 FDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD--FEAAVKMSDGFN 387 (437)
T ss_dssp SSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC--HHHHHHTCCSCC
T ss_pred ccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC--HHHHHHhCCCCC
Confidence 123456778888776543211 11 245788888888888899988874422222211 457788888764
No 203
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.16 E-value=1e-06 Score=80.96 Aligned_cols=83 Identities=16% Similarity=0.268 Sum_probs=40.4
Q ss_pred CccEEEeCCCccccc-CccccCCCCCcEEEccCCC-cCC--CcccCCC----CCCCEEEccCC-CCCC-CchhhcCCCcc
Q 003203 432 KLRGLALSEMQLLSL-PPSVHLLSNLQTLCLDQCV-VGD--ISIIGNL----KKLEILSLVDS-DIER-LPNEIGQLTQL 501 (839)
Q Consensus 432 ~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~-~~~--~~~~~~l----~~L~~L~l~~~-~l~~-lp~~i~~l~~L 501 (839)
+|+.||+++|.++.. -..+..+++|++|+|++|. +++ +..+..+ ++|++|+|++| +++. --..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 577777777765521 2334556666666666663 333 2333332 24555555555 3441 11223444555
Q ss_pred CeEecCCCcCCCc
Q 003203 502 RCLDLSFCRNLKV 514 (839)
Q Consensus 502 ~~L~l~~~~~l~~ 514 (839)
++|++++|..++.
T Consensus 142 ~~L~L~~c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCC
T ss_pred CEEECCCCCCCCc
Confidence 5555555544443
No 204
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.14 E-value=3e-05 Score=77.94 Aligned_cols=181 Identities=15% Similarity=0.178 Sum_probs=99.4
Q ss_pred CCCCCccccchHHHHHHHHHHhc---C---------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC
Q 003203 30 SNQGYKSFESRKSILCDILDWLT---S---------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST 97 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~---~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 97 (839)
++....+++|.+..++++.+.+. . ...+-+.|+|++|+||||+|+.+++.... . .+.++.+.-
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~--~---~~~i~~~~~ 81 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV--P---FFTISGSDF 81 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC--C---EEEECSCSS
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC--C---EEEEeHHHH
Confidence 34566789999887777665542 1 11345889999999999999999987632 1 233322211
Q ss_pred CCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc----------------cccccccCC--C
Q 003203 98 ANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID----------------LVTVGIPFG--N 159 (839)
Q Consensus 98 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~----------------~~~l~~~l~--~ 159 (839)
.+ .. ..........+.+......+.++++|+++.... ...+...+. .
T Consensus 82 ~~--------------~~-~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (257)
T 1lv7_A 82 VE--------------MF-VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE 146 (257)
T ss_dssp TT--------------SC-CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC
T ss_pred HH--------------Hh-hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc
Confidence 10 00 011122333444444445678999999853210 011111111 1
Q ss_pred CCCCceEEEEeCchhhhhhh-c---CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCC-chhHHH
Q 003203 160 AHRGCKILLASRYRDILVSE-M---HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGG-LPLAIV 232 (839)
Q Consensus 160 ~~~~s~iivTtr~~~~~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G-~Plai~ 232 (839)
...+..||.||......... . .....+.++..+.++-.++++.+.......++. ....++..+.| .+--+.
T Consensus 147 ~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~--~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 147 GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPGFSGADLA 222 (257)
T ss_dssp SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHHH
T ss_pred cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc--cHHHHHHHcCCCCHHHHH
Confidence 13445677777665432111 1 123567888888888888888877432222111 13456677777 554444
No 205
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=3.8e-05 Score=81.71 Aligned_cols=177 Identities=15% Similarity=0.196 Sum_probs=99.7
Q ss_pred CCCCCccccchHHHHHHHHHHhc-------------CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec
Q 003203 30 SNQGYKSFESRKSILCDILDWLT-------------SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS 96 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~-------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 96 (839)
|.....++.|-++..++|.+.+. -...+-|.++|++|+|||++|+++++..... .+.++.+.
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~ 241 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSE 241 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGG
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecch
Confidence 33445788999988888877764 1234678999999999999999999887522 23333332
Q ss_pred CCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc------------c----cccccccCC--
Q 003203 97 TANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI------------D----LVTVGIPFG-- 158 (839)
Q Consensus 97 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~------------~----~~~l~~~l~-- 158 (839)
-.+ . ........+..++.......+.+|++|+++... . +..+...+.
T Consensus 242 l~~--------------~-~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~ 306 (428)
T 4b4t_K 242 FVH--------------K-YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF 306 (428)
T ss_dssp TCC--------------S-SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS
T ss_pred hhc--------------c-ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC
Confidence 111 0 001112233444554445688999999986320 0 111111111
Q ss_pred CCCCCceEEEEeCchhhhh-hhc---CccceEEccCCC-HHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCch
Q 003203 159 NAHRGCKILLASRYRDILV-SEM---HSQYNYCVSVLN-KEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLP 228 (839)
Q Consensus 159 ~~~~~s~iivTtr~~~~~~-~~~---~~~~~~~l~~L~-~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~P 228 (839)
....+..||.||...+... ... .....++++.+. .++-.++|+.+.......++.. ...|++.+.|.-
T Consensus 307 ~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d--l~~lA~~t~G~s 379 (428)
T 4b4t_K 307 DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD--LDSLIIRNDSLS 379 (428)
T ss_dssp CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC--HHHHHHHTTTCC
T ss_pred CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC--HHHHHHHCCCCC
Confidence 1234556777777665331 111 224567786665 4555567776663322222111 457788888764
No 206
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.11 E-value=5.6e-06 Score=78.12 Aligned_cols=125 Identities=14% Similarity=0.162 Sum_probs=69.3
Q ss_pred CCCccccc----hHHHHHHHHHHhcC---CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHH
Q 003203 32 QGYKSFES----RKSILCDILDWLTS---PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQ 104 (839)
Q Consensus 32 ~~~~~fvg----R~~~~~~l~~~l~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 104 (839)
...+.|++ +++.++.+.+++.+ ...+.++|+|++|+||||||+.+++.......+. +++++ ..++.
T Consensus 7 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~ 79 (180)
T 3ec2_A 7 ANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLI 79 (180)
T ss_dssp CCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHH
T ss_pred CccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHH
Confidence 34455654 44555555555542 2346899999999999999999999886332222 33432 34444
Q ss_pred HHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCC--ccccc--cccccCCC-CCCCceEEEEeCch
Q 003203 105 DEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICT--SIDLV--TVGIPFGN-AHRGCKILLASRYR 173 (839)
Q Consensus 105 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~--~~~~~--~l~~~l~~-~~~~s~iivTtr~~ 173 (839)
..+......... . ...+.+. +.-+|||||++. .+.|. .+...+.. ...|..+|+||...
T Consensus 80 ~~~~~~~~~~~~----~----~~~~~~~--~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 80 FRLKHLMDEGKD----T----KFLKTVL--NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HHHHHHHHHTCC----S----HHHHHHH--TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred HHHHHHhcCchH----H----HHHHHhc--CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 444443322211 1 2233332 556899999973 22221 11111111 12467788888754
No 207
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.11 E-value=1.3e-05 Score=94.08 Aligned_cols=153 Identities=12% Similarity=0.136 Sum_probs=90.2
Q ss_pred CCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhcc----CCe-EEEEEEecCCCHHHHHH
Q 003203 31 NQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNL----FDQ-VIFVLASSTANVKRIQD 105 (839)
Q Consensus 31 ~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~-~~wv~~~~~~~~~~~~~ 105 (839)
+.....++||+++++++...+......-+.|+|++|+|||++|+.+++....... .+. ++.++.
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~----------- 244 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM----------- 244 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred hCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----------
Confidence 3445679999999999999998766667889999999999999999998743210 011 222222
Q ss_pred HHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccccccccccCCCCCCCceEEEEeCchhhh------hhh
Q 003203 106 EIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSIDLVTVGIPFGNAHRGCKILLASRYRDIL------VSE 179 (839)
Q Consensus 106 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~~~------~~~ 179 (839)
+..... ........+.......++.+|++|. ..+....+...+. ....++|.||...... ...
T Consensus 245 ------g~~~~G-~~e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al 313 (758)
T 3pxi_A 245 ------GTKYRG-EFEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAAL 313 (758)
T ss_dssp ---------------CTTHHHHHHHHHTCCCCEEEECC----------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred ------cccccc-hHHHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHH
Confidence 000000 1112233444555556788999992 2222222333322 2346677777655410 101
Q ss_pred cCccceEEccCCCHHHHHHHHHHHhC
Q 003203 180 MHSQYNYCVSVLNKEEAWSLFKKMVG 205 (839)
Q Consensus 180 ~~~~~~~~l~~L~~~ea~~Lf~~~~~ 205 (839)
......+.++..+.++..+++.....
T Consensus 314 ~rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 314 ERRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp HHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 11235789999999999999997763
No 208
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.08 E-value=1.5e-06 Score=78.63 Aligned_cols=111 Identities=10% Similarity=0.026 Sum_probs=64.1
Q ss_pred cccchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhh
Q 003203 36 SFESRKSILCDILDWLT--SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCL 113 (839)
Q Consensus 36 ~fvgR~~~~~~l~~~l~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 113 (839)
+++|+...++++.+.+. .....-|.|+|++|+|||++|+.+++..... ... .+ ++.+...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~-~~~-~v-~~~~~~~~~------------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNA-QGE-FV-YRELTPDNA------------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTT-TSC-CE-EEECCTTTS-------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCcc-CCC-EE-EECCCCCcc-------------
Confidence 57899999999998875 2222456799999999999999998764321 112 23 555543222
Q ss_pred hccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccccCCCCCCCceEEEEeCch
Q 003203 114 ELCKGTESERARTLFDRLWKENKILVILDDICTSI--DLVTVGIPFGNAHRGCKILLASRYR 173 (839)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTtr~~ 173 (839)
... ....... +.-.|++|+++... ....+...+.......++|.||...
T Consensus 66 ----~~~----~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 ----PQL----NDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp ----SCH----HHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred ----hhh----hcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 000 0111111 23468999998652 2233333333334456788877754
No 209
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.07 E-value=1.2e-05 Score=82.42 Aligned_cols=147 Identities=16% Similarity=0.060 Sum_probs=91.3
Q ss_pred chHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHh-ccCCeEEEEEEec-CCCHHHHHHHHHHHhhhhcc
Q 003203 39 SRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQ-NLFDQVIFVLASS-TANVKRIQDEIADQLCLELC 116 (839)
Q Consensus 39 gR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~ 116 (839)
|.++.++.|.+.+..++.+...++|+.|+||||+|..+++..... .....+.+++.+. ...+.++ +++.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~i-r~li~~~~~~p- 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDFLNYSP- 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHHHTSCC-
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHH-HHHHHHHhhcc-
Confidence 445667788888887767899999999999999999998763211 1122344554332 2233322 22333321110
Q ss_pred CCCchHHHHHHHHHHHcCCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCchh-hhhhhcCccceEEccCCCH
Q 003203 117 KGTESERARTLFDRLWKENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRYRD-ILVSEMHSQYNYCVSVLNK 193 (839)
Q Consensus 117 ~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~~-~~~~~~~~~~~~~l~~L~~ 193 (839)
..+++-++|+|+++.. ...+++...+....+.+.+|++|.+.. +... .... .++++++++
T Consensus 79 ---------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~t-I~SR-~~~f~~l~~ 141 (305)
T 2gno_A 79 ---------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPT-IKSR-VFRVVVNVP 141 (305)
T ss_dssp ---------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHH-HHTT-SEEEECCCC
T ss_pred ---------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHH-HHce-eEeCCCCCH
Confidence 0246788999999865 344555555544456777777776553 3332 2223 899999999
Q ss_pred HHHHHHHHHHh
Q 003203 194 EEAWSLFKKMV 204 (839)
Q Consensus 194 ~ea~~Lf~~~~ 204 (839)
++..+.+.+..
T Consensus 142 ~~i~~~L~~~~ 152 (305)
T 2gno_A 142 KEFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998887
No 210
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.03 E-value=4.9e-05 Score=89.32 Aligned_cols=158 Identities=17% Similarity=0.218 Sum_probs=96.7
Q ss_pred CCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhcc----CCeEEE-EEEecCCCHHHHHHH
Q 003203 32 QGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNL----FDQVIF-VLASSTANVKRIQDE 106 (839)
Q Consensus 32 ~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~w-v~~~~~~~~~~~~~~ 106 (839)
.....++||+.+++++.+.+......-+.|+|++|+|||++|+.+++....... ....+| ++.+..
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l--------- 253 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL--------- 253 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-----------
T ss_pred CCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH---------
Confidence 345679999999999999998766677899999999999999999998754321 122222 211110
Q ss_pred HHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc--------c---cccccccCCCCCCCceEEEEeCchhh
Q 003203 107 IADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI--------D---LVTVGIPFGNAHRGCKILLASRYRDI 175 (839)
Q Consensus 107 i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~--------~---~~~l~~~l~~~~~~s~iivTtr~~~~ 175 (839)
+..........+....+++.+...++.+|++||++... . ...+...+. ..+.++|.+|.....
T Consensus 254 ----~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~ 327 (758)
T 1r6b_X 254 ----LAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEF 327 (758)
T ss_dssp -----CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHH
T ss_pred ----hccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHH
Confidence 00001112223344455555554567999999998541 1 111222221 234567777765432
Q ss_pred hh------hhcCccceEEccCCCHHHHHHHHHHHh
Q 003203 176 LV------SEMHSQYNYCVSVLNKEEAWSLFKKMV 204 (839)
Q Consensus 176 ~~------~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 204 (839)
.. ........+.+++.+.++..+++....
T Consensus 328 ~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 11 011123468899999999999998665
No 211
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.01 E-value=2.4e-06 Score=80.99 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=66.0
Q ss_pred hhcCCCCccEEEeCCC-ccc-----ccCccccCCCCCcEEEccCCCcCCC------cccCCCCCCCEEEccCCCCCC---
Q 003203 426 FFTGMSKLRGLALSEM-QLL-----SLPPSVHLLSNLQTLCLDQCVVGDI------SIIGNLKKLEILSLVDSDIER--- 490 (839)
Q Consensus 426 ~~~~l~~L~~L~l~~~-~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~------~~~~~l~~L~~L~l~~~~l~~--- 490 (839)
.+...++|++|+|++| .+. .+...+...++|++|+|++|.+.+- ..+...++|++|+|++|.|..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3456677778888777 665 2445556667777777777776551 334445667777777776663
Q ss_pred --CchhhcCCCccCeEec--CCCcCCCccCc----hhhcCccccCeEEccCCcc
Q 003203 491 --LPNEIGQLTQLRCLDL--SFCRNLKVIPP----NVISKLTQLEELYMGNTSV 536 (839)
Q Consensus 491 --lp~~i~~l~~L~~L~l--~~~~~l~~~p~----~~l~~l~~L~~L~l~~~~~ 536 (839)
+...+...++|++|++ ++|. ++.-.. ..+...++|++|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3455566666777777 5554 333111 1134446666777666654
No 212
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.98 E-value=7.1e-05 Score=81.86 Aligned_cols=180 Identities=16% Similarity=0.196 Sum_probs=103.3
Q ss_pred CCccccchHHHHHHHHHHhcC-------------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCC
Q 003203 33 GYKSFESRKSILCDILDWLTS-------------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTAN 99 (839)
Q Consensus 33 ~~~~fvgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 99 (839)
....++|.+..+++|.+++.. ...+-|.|+|++|+|||++|+.+++... ...+.++.+.
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~-----~~fv~vn~~~--- 273 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG-----AFFFLINGPE--- 273 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS-----SEEEEEEHHH---
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC-----CCEEEEEchH---
Confidence 456799999999999888751 3345789999999999999999987652 1233343211
Q ss_pred HHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc-------------ccccccccCC--CCCCCc
Q 003203 100 VKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI-------------DLVTVGIPFG--NAHRGC 164 (839)
Q Consensus 100 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~-------------~~~~l~~~l~--~~~~~s 164 (839)
+...+. ..........+.....+++.+|+||+++... ....+...+. ....+.
T Consensus 274 -------l~~~~~-----g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 274 -------IMSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp -------HHTSCT-----THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred -------hhhhhc-----chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 111110 0111222334444445678899999995321 0111211111 122345
Q ss_pred eEEEEeCchhhhhhh-c---CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCc-hhHHHHH
Q 003203 165 KILLASRYRDILVSE-M---HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGL-PLAIVIV 234 (839)
Q Consensus 165 ~iivTtr~~~~~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plai~~~ 234 (839)
+||.||......... . .....+.+...+.++-.++++.++.......+. ...++++.+.|. +-.+..+
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~--~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV--DLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTC--CHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchh--hHHHHHHHccCCcHHHHHHH
Confidence 666677655432111 1 223478999999999999999988543222111 135677777775 4444443
No 213
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.92 E-value=4.5e-06 Score=84.66 Aligned_cols=177 Identities=19% Similarity=0.149 Sum_probs=93.1
Q ss_pred CCCCccccchHHHHHHHHHHhc---C---------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC
Q 003203 31 NQGYKSFESRKSILCDILDWLT---S---------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA 98 (839)
Q Consensus 31 ~~~~~~fvgR~~~~~~l~~~l~---~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 98 (839)
......++|.+..++++.+.+. . ...+-+.|+|++|+|||++|+.+++.... .|- .++.+.-.
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~--~~~---~v~~~~~~ 81 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV--PFF---SMGGSSFI 81 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC--CCC---CCCSCTTT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--CEE---EechHHHH
Confidence 3445678898877777666553 1 11234789999999999999999987642 221 11111100
Q ss_pred CHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc-----------------ccccccccCCC--
Q 003203 99 NVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI-----------------DLVTVGIPFGN-- 159 (839)
Q Consensus 99 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~-----------------~~~~l~~~l~~-- 159 (839)
+ .+.. ..... ...+++.....++.+|++||++... .+..+...+..
T Consensus 82 ~----------~~~~-~~~~~----~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (268)
T 2r62_A 82 E----------MFVG-LGASR----VRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG 146 (268)
T ss_dssp T----------SCSS-SCSSS----SSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS
T ss_pred H----------hhcc-hHHHH----HHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc
Confidence 0 0000 00000 1112222323466899999996431 12222222221
Q ss_pred -CCCCceEEEEeCchhhhh-hhc---CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchh
Q 003203 160 -AHRGCKILLASRYRDILV-SEM---HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPL 229 (839)
Q Consensus 160 -~~~~s~iivTtr~~~~~~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl 229 (839)
......||.||....... ... .....+.++..+.++-.++++..+.......+. ....|++.+.|.|-
T Consensus 147 ~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~g~~g 219 (268)
T 2r62_A 147 SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDV--NLQEVAKLTAGLAG 219 (268)
T ss_dssp CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSC--CTTTTTSSSCSSCH
T ss_pred cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCcc--CHHHHHHHcCCCCH
Confidence 112345666776554221 111 223567888899999999998887432211111 02346666777654
No 214
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.90 E-value=2.7e-05 Score=74.93 Aligned_cols=124 Identities=17% Similarity=0.161 Sum_probs=67.3
Q ss_pred CCCccccchH----HHHHHHHHHhcCC----CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHH
Q 003203 32 QGYKSFESRK----SILCDILDWLTSP----NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRI 103 (839)
Q Consensus 32 ~~~~~fvgR~----~~~~~l~~~l~~~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 103 (839)
...++|++.. +.++.+.+++... ..+.+.|+|++|+|||+||+.+++....+ ...++|+++. .+
T Consensus 22 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~ 93 (202)
T 2w58_A 22 ASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------EL 93 (202)
T ss_dssp CCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HH
T ss_pred CCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HH
Confidence 4556677644 3445555565522 12688999999999999999999988643 3345666443 33
Q ss_pred HHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc--ccccc--ccc-cCCCC-CCCceEEEEeCch
Q 003203 104 QDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS--IDLVT--VGI-PFGNA-HRGCKILLASRYR 173 (839)
Q Consensus 104 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~--~~~~~--l~~-~l~~~-~~~s~iivTtr~~ 173 (839)
...+..... .... ....+.+.+ .-+|||||++.. ..|.. +.. .+... ..+.++|+||...
T Consensus 94 ~~~~~~~~~----~~~~----~~~~~~~~~--~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 94 FRELKHSLQ----DQTM----NEKLDYIKK--VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp HHHHHHC-------CCC----HHHHHHHHH--SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHHHhc----cchH----HHHHHHhcC--CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 333333221 1111 122333332 238999999643 22221 211 11111 2456788888754
No 215
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.89 E-value=9.4e-05 Score=80.14 Aligned_cols=175 Identities=17% Similarity=0.192 Sum_probs=100.2
Q ss_pred CCCccccchHHHHHHHHHHhc---CC---------CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCC
Q 003203 32 QGYKSFESRKSILCDILDWLT---SP---------NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTAN 99 (839)
Q Consensus 32 ~~~~~fvgR~~~~~~l~~~l~---~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 99 (839)
....+++|.++.++++.+.+. .. -.+-|.|+|++|+|||+||+.+++.... . .+.++.+.-..
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~--~---f~~is~~~~~~ 87 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV--P---FFHISGSDFVE 87 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC--C---EEEEEGGGTTT
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC--C---eeeCCHHHHHH
Confidence 445678999887766666543 21 1245889999999999999999987642 1 23333322111
Q ss_pred HHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc----------------ccccccccCC--CCC
Q 003203 100 VKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI----------------DLVTVGIPFG--NAH 161 (839)
Q Consensus 100 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~----------------~~~~l~~~l~--~~~ 161 (839)
. . .+ ........++.....+.+.+|++|+++... .+..+...+. ...
T Consensus 88 ~--~-------~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 88 L--F-------VG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp C--C-------TT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred H--H-------hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 0 0 00 011223344444444678999999996531 1111211111 112
Q ss_pred CCceEEEEeCchhhhh-hhc---CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCch
Q 003203 162 RGCKILLASRYRDILV-SEM---HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLP 228 (839)
Q Consensus 162 ~~s~iivTtr~~~~~~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~P 228 (839)
.+..||.||...+... ... .....+.++..+.++-.++++.++......++.. ...|++.+.|..
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~--l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN--LEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC--HHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh--HHHHHHhcCCCc
Confidence 4566777777665432 111 2234788888888888889988875432222211 345788888876
No 216
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.87 E-value=0.0003 Score=73.43 Aligned_cols=177 Identities=12% Similarity=0.093 Sum_probs=98.9
Q ss_pred cccCCCCCccccchHHHHHHHHHHhcC-----CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC-C-C
Q 003203 27 WLRSNQGYKSFESRKSILCDILDWLTS-----PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST-A-N 99 (839)
Q Consensus 27 ~~~~~~~~~~fvgR~~~~~~l~~~l~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~-~ 99 (839)
....|.....++|++..++.+...+.. .....++|+|++|+||||||+.+++..... | .. .+.. . .
T Consensus 17 ~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~---~~--~sg~~~~~ 89 (334)
T 1in4_A 17 QFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--I---HV--TSGPVLVK 89 (334)
T ss_dssp CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--E---EE--EETTTCCS
T ss_pred HHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--E---EE--EechHhcC
Confidence 334556778899999888888777652 234678999999999999999999887421 1 11 1111 1 1
Q ss_pred HHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccccCCCC--------C--------
Q 003203 100 VKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI--DLVTVGIPFGNA--------H-------- 161 (839)
Q Consensus 100 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~--------~-------- 161 (839)
..+ ...+...+ .++-++++|+++... ..+.+...+... +
T Consensus 90 ~~~---------------------l~~~~~~~--~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~ 146 (334)
T 1in4_A 90 QGD---------------------MAAILTSL--ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRI 146 (334)
T ss_dssp HHH---------------------HHHHHHHC--CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC-------------
T ss_pred HHH---------------------HHHHHHHc--cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccc
Confidence 111 11111111 234567788876431 111111100000 0
Q ss_pred --CCceEEEEeCchh-hhhh-hcCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHHH
Q 003203 162 --RGCKILLASRYRD-ILVS-EMHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVIV 234 (839)
Q Consensus 162 --~~s~iivTtr~~~-~~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 234 (839)
+...++-+|+... +... .......+.+++.+.++-.+++++.+...... -..+.+..|+++++|.|-.+..+
T Consensus 147 ~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~-~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 147 DIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE-IEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp --CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC-BCHHHHHHHHHTSTTCHHHHHHH
T ss_pred cCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHhcCCChHHHHHH
Confidence 1122333333332 2111 11223458899999999999999887322111 22456889999999999754433
No 217
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.87 E-value=0.00097 Score=71.56 Aligned_cols=295 Identities=11% Similarity=0.137 Sum_probs=143.4
Q ss_pred CccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCc---ccccC-ccccCCCCCcEEEccCCCcCC--CcccCCCCCCCE
Q 003203 407 QLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQ---LLSLP-PSVHLLSNLQTLCLDQCVVGD--ISIIGNLKKLEI 480 (839)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~ 480 (839)
.|+.+.+... +..+....|.++.+|+.+.+..+. ++.+. ..+..+.+|+.+.+..+ +.. ...+.++.+|+.
T Consensus 65 ~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence 4777776543 466777778888888888876652 44443 35566677776665543 222 245667777777
Q ss_pred EEccCCCCCCCch-hhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccccccccccccccchhhhccCC
Q 003203 481 LSLVDSDIERLPN-EIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWEFEGLNIERSNASLQELRHLS 559 (839)
Q Consensus 481 L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~ 559 (839)
+.+..+ +..++. .+..+.+|+.+.+.. .++.+....+.+ .+|+.+.+...... .....+..+.
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~-~~l~~i~ip~~~~~------------i~~~af~~c~ 205 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTG-TALTQIHIPAKVTR------------IGTNAFSECF 205 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT-CCCSEEEECTTCCE------------ECTTTTTTCT
T ss_pred ccccce-eeeecccceecccccccccccc--eeeEeccccccc-cceeEEEECCcccc------------cccchhhhcc
Confidence 777543 333332 355667777777764 255665554543 45776666443211 1113345556
Q ss_pred CCCEEEEEeccccCCCccccccc-cceEEEEEcCCCCCCCCCCCccEEEecccCCcchHHHHHHhcccceEEeccccCch
Q 003203 560 QLTTLEIQIQDAMILPKGLFSKK-LERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLDEILMQLKGIEHLYLDEVPGIK 638 (839)
Q Consensus 560 ~L~~L~l~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 638 (839)
+|.................+... .....+... .....+....+...-.......+..+.+|+.+.+.+. +.
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~--~~ 277 (394)
T 4gt6_A 206 ALSTITSDSESYPAIDNVLYEKSANGDYALIRY------PSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDS--VV 277 (394)
T ss_dssp TCCEEEECCSSSCBSSSCEEEECTTSCEEEEEC------CTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTT--CC
T ss_pred ccceecccccccccccceeeccccccccccccc------ccccccceEEcCCcceEcccceeeecccccEEecccc--cc
Confidence 66665554433333222221100 000000000 0001111111110000000012333455555555321 11
Q ss_pred hhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhcccccccccccccccccccCCCCEEEEecCCC
Q 003203 639 NVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICHSQLTAVSFCNLKIIKVRNCDR 718 (839)
Q Consensus 639 ~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~c~~ 718 (839)
.+. ......+++|+.+.+.. .+..+++. .+..+.+|+.+.|.+ +++.+.... ...+.+|+.+.|-. .
T Consensus 278 ~I~-~~aF~~c~~L~~i~l~~--~i~~I~~~----aF~~c~~L~~i~lp~--~v~~I~~~a--F~~C~~L~~i~ip~--s 344 (394)
T 4gt6_A 278 SIG-TGAFMNCPALQDIEFSS--RITELPES----VFAGCISLKSIDIPE--GITQILDDA--FAGCEQLERIAIPS--S 344 (394)
T ss_dssp EEC-TTTTTTCTTCCEEECCT--TCCEECTT----TTTTCTTCCEEECCT--TCCEECTTT--TTTCTTCCEEEECT--T
T ss_pred eec-CcccccccccccccCCC--cccccCce----eecCCCCcCEEEeCC--cccEehHhH--hhCCCCCCEEEECc--c
Confidence 111 11123456677776643 34444332 345566777776643 345443222 23456777777743 4
Q ss_pred cccccchhhhhcCCCccEEEEecc
Q 003203 719 LKNVFSFSIARGLPQLQTITVIKC 742 (839)
Q Consensus 719 L~~l~~~~~~~~l~~L~~L~l~~c 742 (839)
++.+.... ..+|++|+.+++.+.
T Consensus 345 v~~I~~~a-F~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 345 VTKIPESA-FSNCTALNNIEYSGS 367 (394)
T ss_dssp CCBCCGGG-GTTCTTCCEEEESSC
T ss_pred cCEEhHhH-hhCCCCCCEEEECCc
Confidence 55565432 367777777777653
No 218
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.86 E-value=4e-05 Score=79.53 Aligned_cols=106 Identities=12% Similarity=0.110 Sum_probs=61.5
Q ss_pred ccccchHHHHHHHHHHhcCC---------CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHH
Q 003203 35 KSFESRKSILCDILDWLTSP---------NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQD 105 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 105 (839)
..++|.+..++.+...+... ....+.|+|++|+|||++|+.+++..... -...+.++.+....... ..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~~-~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHA-VS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTTH-HH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeeccccccccc-HH
Confidence 35789999998888887632 13578999999999999999999887432 12345555554332211 11
Q ss_pred HHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCc
Q 003203 106 EIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTS 147 (839)
Q Consensus 106 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~ 147 (839)
.+ ++......... ....+...+.....-++++|+++..
T Consensus 94 ~l---~g~~~~~~~~~-~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 94 RL---IGAPPGYVGYE-EGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp HH---HCCCTTSTTTT-TCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred Hh---cCCCCcccccc-ccchHHHHHHhCCCeEEEEeChhhc
Confidence 11 22111000000 0012223333345579999999764
No 219
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.83 E-value=1.1e-05 Score=84.85 Aligned_cols=128 Identities=18% Similarity=0.250 Sum_probs=81.1
Q ss_pred CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccc-cCccc--cCCCCCcEEEccCC--C------cCCC-cc
Q 003203 404 EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLS-LPPSV--HLLSNLQTLCLDQC--V------VGDI-SI 471 (839)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~--~~l~~L~~L~l~~~--~------~~~~-~~ 471 (839)
.+|+|+.|.+.++.. ..++. + .+++|+.|++..|.+.. ....+ ..+++|++|+|+.+ . +..+ +.
T Consensus 170 ~~P~L~~L~L~g~~~-l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNN-LSIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp TCTTCCEEEEECCBT-CBCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred cCCCCcEEEEeCCCC-ceecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 567888888877632 23333 2 27788888888877651 12223 26788888887532 1 1111 11
Q ss_pred c--CCCCCCCEEEccCCCCCC-Cchhh---cCCCccCeEecCCCcCCCc-----cCchhhcCccccCeEEccCCccc
Q 003203 472 I--GNLKKLEILSLVDSDIER-LPNEI---GQLTQLRCLDLSFCRNLKV-----IPPNVISKLTQLEELYMGNTSVK 537 (839)
Q Consensus 472 ~--~~l~~L~~L~l~~~~l~~-lp~~i---~~l~~L~~L~l~~~~~l~~-----~p~~~l~~l~~L~~L~l~~~~~~ 537 (839)
+ ..+++|++|++++|.+.. .+..+ ..+++|++|+++.|. ++. ++.. +.++++|+.|++++|.+.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~-L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDH-VDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTT-HHHHTTCSEEECCSBBCC
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhh-cccCCcceEEECCCCcCC
Confidence 2 357889999998887752 22222 357889999998765 554 2222 456788999999888764
No 220
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.81 E-value=8.8e-06 Score=77.00 Aligned_cols=118 Identities=12% Similarity=0.080 Sum_probs=88.5
Q ss_pred cCccccCCCCCcEEEccCC-CcCC------CcccCCCCCCCEEEccCCCCCC-----CchhhcCCCccCeEecCCCcCCC
Q 003203 446 LPPSVHLLSNLQTLCLDQC-VVGD------ISIIGNLKKLEILSLVDSDIER-----LPNEIGQLTQLRCLDLSFCRNLK 513 (839)
Q Consensus 446 lp~~~~~l~~L~~L~l~~~-~~~~------~~~~~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~l~ 513 (839)
+...+...++|++|+|++| .+.. ...+...++|++|+|++|.+.. +...+...++|++|++++|. ++
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-IS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CC
Confidence 3445677899999999999 8776 1456778999999999998873 45566777899999999986 55
Q ss_pred c-----cCchhhcCccccCeEEc--cCCccccccccccccccccchhhhccCCCCCEEEEEecccc
Q 003203 514 V-----IPPNVISKLTQLEELYM--GNTSVKWEFEGLNIERSNASLQELRHLSQLTTLEIQIQDAM 572 (839)
Q Consensus 514 ~-----~p~~~l~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 572 (839)
. +... +...++|++|++ ++|.+... ........+...++|+.|++++|.+.
T Consensus 107 ~~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~-------g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 107 GSGILALVEA-LQSNTSLIELRIDNQSQPLGNN-------VEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHG-GGGCSSCCEEECCCCSSCCCHH-------HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHH-HHhCCCceEEEecCCCCCCCHH-------HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4 2232 667789999999 77887511 12234456777899999999988654
No 221
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.75 E-value=0.00011 Score=76.12 Aligned_cols=47 Identities=19% Similarity=0.126 Sum_probs=38.2
Q ss_pred ccccchHHHHHHHHHHhcC--------------CCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 35 KSFESRKSILCDILDWLTS--------------PNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~~--------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..++|++..++.+...+.. .....+.|+|++|+|||++|+.+++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999988887753 2245688999999999999999998773
No 222
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.73 E-value=5.7e-06 Score=82.31 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=6.6
Q ss_pred CCCCCCEEEccCCCCC
Q 003203 474 NLKKLEILSLVDSDIE 489 (839)
Q Consensus 474 ~l~~L~~L~l~~~~l~ 489 (839)
.+++|++|+|++|.++
T Consensus 194 ~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 194 KAPNLKILNLSGNELK 209 (267)
T ss_dssp HSTTCCEEECTTSCCC
T ss_pred hCCCCCEEECCCCccC
Confidence 3444444444444443
No 223
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.69 E-value=3.1e-05 Score=76.97 Aligned_cols=78 Identities=26% Similarity=0.271 Sum_probs=60.7
Q ss_pred cCCCCccEEEeCCCccccc---CccccCCCCCcEEEccCCCcCCCcccCCCC--CCCEEEccCCCCC-CCch-------h
Q 003203 428 TGMSKLRGLALSEMQLLSL---PPSVHLLSNLQTLCLDQCVVGDISIIGNLK--KLEILSLVDSDIE-RLPN-------E 494 (839)
Q Consensus 428 ~~l~~L~~L~l~~~~~~~l---p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~--~L~~L~l~~~~l~-~lp~-------~ 494 (839)
.++++|++|+|++|.+..+ |..+..+++|++|+|++|.+..+..+..+. +|++|+|++|.+. .+|. .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 5688999999999998854 466778999999999999998865555555 8999999998876 3441 2
Q ss_pred hcCCCccCeEe
Q 003203 495 IGQLTQLRCLD 505 (839)
Q Consensus 495 i~~l~~L~~L~ 505 (839)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 55677777775
No 224
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.67 E-value=4.7e-05 Score=76.83 Aligned_cols=62 Identities=11% Similarity=0.183 Sum_probs=39.4
Q ss_pred CCccccchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec
Q 003203 33 GYKSFESRKSILCDILDWLT--SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS 96 (839)
Q Consensus 33 ~~~~fvgR~~~~~~l~~~l~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 96 (839)
....|+|++..+.++.+.+. ......|.|+|++|+|||++|+.+++..... -...+.++++.
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~ 67 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAA 67 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGG
T ss_pred ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCC
Confidence 34568999999888877665 2223567899999999999999998765422 12244555554
No 225
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.66 E-value=0.0018 Score=69.49 Aligned_cols=294 Identities=14% Similarity=0.117 Sum_probs=162.8
Q ss_pred cceEEecCCCCCCCCCCC--CCCCccEEeecCCC--CCCCCChhhhcCCCCccEEEeCCCcccccC-ccccCCCCCcEEE
Q 003203 386 CSAVFLNDIKTGVLPEGL--EYPQLDFFCMNSKD--PFFKMPENFFTGMSKLRGLALSEMQLLSLP-PSVHLLSNLQTLC 460 (839)
Q Consensus 386 ~~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~ 460 (839)
++.+.+... +..+.+.. +|.+|+.+.+..+. .+..+....|.++.+|+.+.+..+ +..++ ..+..+.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 566666532 44454432 89999999997753 356788888999999998877654 44443 4668899999999
Q ss_pred ccCCCcCC-CcccCCCCCCCEEEccCCCCCCCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccccc
Q 003203 461 LDQCVVGD-ISIIGNLKKLEILSLVDSDIERLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVKWE 539 (839)
Q Consensus 461 l~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~ 539 (839)
+......- -..+..+.+|+.+.+..+ ++.+....-...+|+.+.+... +..+....+..+.+|.............
T Consensus 144 lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~~~~~~~ 220 (394)
T 4gt6_A 144 IPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK--VTRIGTNAFSECFALSTITSDSESYPAI 220 (394)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT--CCEECTTTTTTCTTCCEEEECCSSSCBS
T ss_pred ccceeeeecccceecccccccccccce-eeEeccccccccceeEEEECCc--ccccccchhhhccccceecccccccccc
Confidence 97542211 356788999999998764 5555554444567888888653 5555555577788888776654432210
Q ss_pred cccccccc--cccchhhhccCCCCCEEEEEeccccCCCccccccccceEEEEEcCCCCCCCCCCCccEEEecccCCcchH
Q 003203 540 FEGLNIER--SNASLQELRHLSQLTTLEIQIQDAMILPKGLFSKKLERYKIYIGDEWDWSGKSDNTRALKLKLCSSIYLD 617 (839)
Q Consensus 540 ~~~~~~~~--~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~ 617 (839)
........ .............+..+.+. +....+.. ..+..+..|+.+.+......-..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~------------------~aF~~c~~L~~i~lp~~~~~I~~ 281 (394)
T 4gt6_A 221 DNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIET------------------HAFDSCAYLASVKMPDSVVSIGT 281 (394)
T ss_dssp SSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECT------------------TTTTTCSSCCEEECCTTCCEECT
T ss_pred cceeecccccccccccccccccccceEEcC-CcceEccc------------------ceeeecccccEEecccccceecC
Confidence 00000000 00000000011111111110 00011111 11233344555544322111111
Q ss_pred HHHHHhcccceEEeccccCchhhccccccCCCCCCCeeeeccCCCcceeecCCCcccccccccchhhhhccccccccccc
Q 003203 618 EILMQLKGIEHLYLDEVPGIKNVLYDLEREGFPQLKHLQVQNNPFILCITDSTAWVCFDAFPLLESLVLHNLIHMEKICH 697 (839)
Q Consensus 618 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~ 697 (839)
..+..+++|+.+.+.. .+..+... ...++.+|+.+.|.. .++.|.+. .+..+.+|+.+.|.. +++.+..
T Consensus 282 ~aF~~c~~L~~i~l~~--~i~~I~~~-aF~~c~~L~~i~lp~--~v~~I~~~----aF~~C~~L~~i~ip~--sv~~I~~ 350 (394)
T 4gt6_A 282 GAFMNCPALQDIEFSS--RITELPES-VFAGCISLKSIDIPE--GITQILDD----AFAGCEQLERIAIPS--SVTKIPE 350 (394)
T ss_dssp TTTTTCTTCCEEECCT--TCCEECTT-TTTTCTTCCEEECCT--TCCEECTT----TTTTCTTCCEEEECT--TCCBCCG
T ss_pred cccccccccccccCCC--cccccCce-eecCCCCcCEEEeCC--cccEehHh----HhhCCCCCCEEEECc--ccCEEhH
Confidence 2344566777777742 23322221 235678899999865 35555432 456778888888853 4555543
Q ss_pred ccccccccCCCCEEEEecC
Q 003203 698 SQLTAVSFCNLKIIKVRNC 716 (839)
Q Consensus 698 ~~~~~~~~~~L~~L~i~~c 716 (839)
.. ...+++|+.+.+.+.
T Consensus 351 ~a--F~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 351 SA--FSNCTALNNIEYSGS 367 (394)
T ss_dssp GG--GTTCTTCCEEEESSC
T ss_pred hH--hhCCCCCCEEEECCc
Confidence 32 345788999988763
No 226
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.65 E-value=0.00072 Score=67.54 Aligned_cols=180 Identities=17% Similarity=0.184 Sum_probs=94.5
Q ss_pred cccCCCCCccccchHHHHHHHHHHhc---CC---------CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEE
Q 003203 27 WLRSNQGYKSFESRKSILCDILDWLT---SP---------NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLA 94 (839)
Q Consensus 27 ~~~~~~~~~~fvgR~~~~~~l~~~l~---~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 94 (839)
...+.....+++|.++...++.+... .. -.+-+.|+|++|+||||||+.++..... ..+.++.
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~-----~~i~~~~ 82 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASG 82 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeeH
Confidence 33445566778898866665554432 10 0123899999999999999999987641 2233321
Q ss_pred ecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc----------------ccccccccCC
Q 003203 95 SSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI----------------DLVTVGIPFG 158 (839)
Q Consensus 95 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~----------------~~~~l~~~l~ 158 (839)
. . +.... ..........+.+......+.++++|+++... ....+...+.
T Consensus 83 ~------~----~~~~~-----~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~ 147 (254)
T 1ixz_A 83 S------D----FVEMF-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 147 (254)
T ss_dssp H------H----HHHSC-----TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHH
T ss_pred H------H----HHHHH-----hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHh
Confidence 1 1 11100 00011223334444433356899999995321 0111211111
Q ss_pred CC--CCCceEEEEeCchhhhhhhc----CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCch
Q 003203 159 NA--HRGCKILLASRYRDILVSEM----HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLP 228 (839)
Q Consensus 159 ~~--~~~s~iivTtr~~~~~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~P 228 (839)
.. .....++.||.......... .....+.++..+.++-.++++.++.......+. ....+++.+.|.-
T Consensus 148 g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 221 (254)
T 1ixz_A 148 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 221 (254)
T ss_dssp TCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred CCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCccc--CHHHHHHHcCCCC
Confidence 11 12234455666655432111 234578899999988888888777432211111 1345677777654
No 227
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.62 E-value=0.00056 Score=74.75 Aligned_cols=48 Identities=19% Similarity=0.075 Sum_probs=37.4
Q ss_pred CccccchHHHHHHHHHHh---cCCC--eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 34 YKSFESRKSILCDILDWL---TSPN--VNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 34 ~~~fvgR~~~~~~l~~~l---~~~~--~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..+++|.++..+.+..++ ..+. .+-+.++|++|+|||++|+.+++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 478999998877655544 3332 25788999999999999999998875
No 228
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.58 E-value=0.00015 Score=83.17 Aligned_cols=175 Identities=15% Similarity=0.206 Sum_probs=100.7
Q ss_pred CCccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCC
Q 003203 33 GYKSFESRKSILCDILDWLT----S---------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTAN 99 (839)
Q Consensus 33 ~~~~fvgR~~~~~~l~~~l~----~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 99 (839)
...++.|-++.+++|.+++. . ...+-|.++|++|+|||+||++++++... ..+.++.+.
T Consensus 202 ~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~-----~~~~v~~~~--- 273 (806)
T 3cf2_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPE--- 273 (806)
T ss_dssp CGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC-----EEEEEEHHH---
T ss_pred ChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----eEEEEEhHH---
Confidence 34567777777666666543 1 22467899999999999999999977642 123332211
Q ss_pred HHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc-------------cccccccCC--CCCCCc
Q 003203 100 VKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID-------------LVTVGIPFG--NAHRGC 164 (839)
Q Consensus 100 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~-------------~~~l~~~l~--~~~~~s 164 (839)
+... ........+..+++......+.+|++|+++.... ...+...+. ....+.
T Consensus 274 -------l~sk-----~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 274 -------IMSK-----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp -------HHSS-----CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred -------hhcc-----cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 1110 0111223344455555556889999999974310 111111111 112344
Q ss_pred eEEEEeCchhhhhhhc----CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCchh
Q 003203 165 KILLASRYRDILVSEM----HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLPL 229 (839)
Q Consensus 165 ~iivTtr~~~~~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl 229 (839)
.||.||...+...... .-...++++.-+.++=.++|+.+........+.. ..+|++++.|.--
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd--l~~lA~~T~Gfsg 408 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD--LEQVANETHGHVG 408 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC--HHHHHHHCCSCCH
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC--HHHHHHhcCCCCH
Confidence 5666666654332112 2246788999999999999988875433222211 4578888888743
No 229
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.58 E-value=0.001 Score=67.33 Aligned_cols=178 Identities=17% Similarity=0.187 Sum_probs=95.4
Q ss_pred cCCCCCccccchHHHHHHHHHHhc---CC---------CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec
Q 003203 29 RSNQGYKSFESRKSILCDILDWLT---SP---------NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS 96 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~---~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 96 (839)
.+.....+++|.++..+++.+... .. -.+-+.|+|++|+||||||+.++.... ...+.++..
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~- 107 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS- 107 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH-
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC-----CCEEEecHH-
Confidence 355566789998877666655443 10 012389999999999999999998764 123333211
Q ss_pred CCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc----------------ccccccccCCCC
Q 003203 97 TANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI----------------DLVTVGIPFGNA 160 (839)
Q Consensus 97 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~ 160 (839)
.+ ..... ......+..+.+......+.++|+|+++... ....+...+...
T Consensus 108 -----~~----~~~~~-----~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg 173 (278)
T 1iy2_A 108 -----DF----VEMFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 173 (278)
T ss_dssp -----HH----HHSTT-----THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTC
T ss_pred -----HH----HHHHh-----hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCC
Confidence 11 11000 0011223334444433467899999995320 011121122211
Q ss_pred C--CCceEEEEeCchhhhhhh----cCccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCch
Q 003203 161 H--RGCKILLASRYRDILVSE----MHSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLP 228 (839)
Q Consensus 161 ~--~~s~iivTtr~~~~~~~~----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~P 228 (839)
. ....++.+|......... ......+.++..+.++-.++++.++.......+. ....+++.+.|..
T Consensus 174 ~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 245 (278)
T 1iy2_A 174 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 245 (278)
T ss_dssp CTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred CCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc--CHHHHHHHcCCCC
Confidence 1 223444566655543211 1234578899999998888998777432211111 1345677777764
No 230
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.53 E-value=0.0002 Score=73.56 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=36.6
Q ss_pred ccccchHHHHHHHHHHhcC--CCeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 35 KSFESRKSILCDILDWLTS--PNVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
..++|++..+.++.+.+.. .....|.|+|++|+|||++|+.+.+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3588999999888888752 233467799999999999999998764
No 231
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.51 E-value=9.5e-06 Score=73.08 Aligned_cols=46 Identities=4% Similarity=-0.070 Sum_probs=33.2
Q ss_pred ccccchHHHHHHHHHHhcC--CCeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 35 KSFESRKSILCDILDWLTS--PNVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
..++|++..++++.+.+.. ....-|.|+|++|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 3578999998888888751 222457799999999999999987643
No 232
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.48 E-value=0.00088 Score=74.66 Aligned_cols=157 Identities=12% Similarity=0.099 Sum_probs=78.7
Q ss_pred cccchHHHHHHHHHHhc------CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHH
Q 003203 36 SFESRKSILCDILDWLT------SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIAD 109 (839)
Q Consensus 36 ~fvgR~~~~~~l~~~l~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 109 (839)
.++|-++..+.+.+.+. ......+.|+|++|+||||+|+.++...... | ..++++...+...+......
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~---~~i~~~~~~~~~~~~g~~~~ 156 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK--F---VRISLGGVRDESEIRGHRRT 156 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE--E---EEECCCC-------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC--e---EEEEecccchhhhhhhHHHH
Confidence 36787777766655443 2234689999999999999999999877421 2 22333322221111111111
Q ss_pred HhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc------ccccccccCCCCC---------------CCceEEE
Q 003203 110 QLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI------DLVTVGIPFGNAH---------------RGCKILL 168 (839)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~------~~~~l~~~l~~~~---------------~~s~iiv 168 (839)
..+. ........+.... ...-++++|+++... ....+...+.... ....+|.
T Consensus 157 ~ig~------~~~~~~~~~~~a~-~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ 229 (543)
T 3m6a_A 157 YVGA------MPGRIIQGMKKAG-KLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIA 229 (543)
T ss_dssp -------------CHHHHHHTTC-SSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEE
T ss_pred Hhcc------CchHHHHHHHHhh-ccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEe
Confidence 1111 0011111222211 133488899997542 1123333222110 3456666
Q ss_pred EeCchhhhh-hhcCccceEEccCCCHHHHHHHHHHHh
Q 003203 169 ASRYRDILV-SEMHSQYNYCVSVLNKEEAWSLFKKMV 204 (839)
Q Consensus 169 Ttr~~~~~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 204 (839)
||....... ........+.+.+++.++-.+++..+.
T Consensus 230 ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 230 TANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp ECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred ccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 666544211 011123478999999999999888765
No 233
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.47 E-value=0.00038 Score=71.08 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=23.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.+.+.++|++|+|||+||+.+++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999999884
No 234
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.45 E-value=0.00021 Score=83.80 Aligned_cols=149 Identities=13% Similarity=0.107 Sum_probs=84.4
Q ss_pred ccccchHHHHHHHHHHhcC-------C--CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHH
Q 003203 35 KSFESRKSILCDILDWLTS-------P--NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQD 105 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~~-------~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 105 (839)
..++|.+..++.+...+.. . ....+.++|++|+|||++|+.+++..... -...+.++++.-.+....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~~~-- 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHST-- 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhccccccc--
Confidence 4589999998888888761 1 12368999999999999999999887422 234556665543211000
Q ss_pred HHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCcc--ccccccccCC-----------CCCCCceEEEEeCc
Q 003203 106 EIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSI--DLVTVGIPFG-----------NAHRGCKILLASRY 172 (839)
Q Consensus 106 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~-----------~~~~~s~iivTtr~ 172 (839)
. ...+...+.....-+|+||+++... ....+...+. ....+.+||+||..
T Consensus 567 -------------~----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 567 -------------S----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp -------------C-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred -------------c----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0 0011112222344588999997542 1222211111 01245688888873
Q ss_pred hh-----h----h----hh-hcCccceEEccCCCHHHHHHHHHHHh
Q 003203 173 RD-----I----L----VS-EMHSQYNYCVSVLNKEEAWSLFKKMV 204 (839)
Q Consensus 173 ~~-----~----~----~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~ 204 (839)
.. + . .. .......+.+.+++.++-.+++...+
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 11 0 0 00 01223588999999999888887765
No 235
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.25 E-value=0.002 Score=64.74 Aligned_cols=152 Identities=16% Similarity=0.163 Sum_probs=83.3
Q ss_pred CCCccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC
Q 003203 32 QGYKSFESRKSILCDILDWLT----S---------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA 98 (839)
Q Consensus 32 ~~~~~fvgR~~~~~~l~~~l~----~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 98 (839)
....++.|-++..++|.+.+. . .-.+-+.|+|++|+||||||+.++..... ..+++....-.
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~ 81 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELL 81 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTC
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHH
Confidence 344567788877777776543 1 11123899999999999999999886542 23344322111
Q ss_pred C--HHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc---------c----ccccccCCC--CC
Q 003203 99 N--VKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID---------L----VTVGIPFGN--AH 161 (839)
Q Consensus 99 ~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~---------~----~~l~~~l~~--~~ 161 (839)
+ ..+. ...+..+.+......+.++++|+++.... . ..+...+.. ..
T Consensus 82 ~~~~~~~-----------------~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~ 144 (274)
T 2x8a_A 82 NMYVGES-----------------ERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR 144 (274)
T ss_dssp SSTTHHH-----------------HHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST
T ss_pred hhhhhHH-----------------HHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc
Confidence 1 0110 11223334433234678999999975310 0 011111111 12
Q ss_pred CCceEEEEeCchhhhhhh-c---CccceEEccCCCHHHHHHHHHHHhC
Q 003203 162 RGCKILLASRYRDILVSE-M---HSQYNYCVSVLNKEEAWSLFKKMVG 205 (839)
Q Consensus 162 ~~s~iivTtr~~~~~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~ 205 (839)
....++.+|...++.... . .-...+.++..+.++-.++|+....
T Consensus 145 ~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 145 QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 334456677766654211 1 3356788999999999999988774
No 236
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.25 E-value=0.002 Score=70.19 Aligned_cols=177 Identities=17% Similarity=0.200 Sum_probs=94.4
Q ss_pred CCCCCccccchHHHHHHHHHHhc---CC---------CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC
Q 003203 30 SNQGYKSFESRKSILCDILDWLT---SP---------NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST 97 (839)
Q Consensus 30 ~~~~~~~fvgR~~~~~~l~~~l~---~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 97 (839)
+.....+++|.++.++++.+... .. -.+-+.|+|++|+||||||+.++..... ..+.++.+.-
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~-----~~i~i~g~~~ 100 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDF 100 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----CEEEEEGGGG
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEehhHH
Confidence 34556779999877766665543 21 1234899999999999999999987641 2334433221
Q ss_pred CCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc----------------cccccccCCC--
Q 003203 98 ANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID----------------LVTVGIPFGN-- 159 (839)
Q Consensus 98 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~----------------~~~l~~~l~~-- 159 (839)
... . ..........+++......+.++++|+++.... +..+...+..
T Consensus 101 ~~~----------~-----~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 101 VEM----------F-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp TSS----------C-----TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred HHh----------h-----hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 100 0 000001111122211112457999999964210 1122111211
Q ss_pred CCCCceEEEEeCchhhhhhh-c---CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCch
Q 003203 160 AHRGCKILLASRYRDILVSE-M---HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLP 228 (839)
Q Consensus 160 ~~~~s~iivTtr~~~~~~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~P 228 (839)
...+..|+.||+........ . .....+.++..+.++-.++++.++......++. ....|++.+.|+.
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv--~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 236 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS--TTHHHHTTSCSCC
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH--HHHHHHHhcCCCC
Confidence 12334555566665543211 1 223578899999988889998877432222211 1346777787775
No 237
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.16 E-value=0.0007 Score=79.47 Aligned_cols=57 Identities=14% Similarity=0.053 Sum_probs=41.9
Q ss_pred ccccchHHHHHHHHHHhcC---------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec
Q 003203 35 KSFESRKSILCDILDWLTS---------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS 96 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 96 (839)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++... ...+.++++.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~ 523 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSE 523 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGG
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechh
Confidence 3588999988888877651 1224789999999999999999998772 2344555544
No 238
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.03 E-value=0.0015 Score=76.32 Aligned_cols=175 Identities=15% Similarity=0.197 Sum_probs=96.0
Q ss_pred CCCccccchHHHHHHHHHHhcC-------------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC
Q 003203 32 QGYKSFESRKSILCDILDWLTS-------------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA 98 (839)
Q Consensus 32 ~~~~~fvgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 98 (839)
.....++|.+..+++|.+++.. ...+.|.|+|++|+||||||+.++..... ..+.++.....
T Consensus 201 v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~-----~~i~v~~~~l~ 275 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPEIM 275 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC-----EEEEEEHHHHS
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC-----cEEEEEchHhh
Confidence 3456799999888888887741 23457899999999999999999876531 12333321110
Q ss_pred CHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc-------------cccccccCC--CCCCC
Q 003203 99 NVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID-------------LVTVGIPFG--NAHRG 163 (839)
Q Consensus 99 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~-------------~~~l~~~l~--~~~~~ 163 (839)
. . ...........+++......+.++++|+++.... ...+...+. ....+
T Consensus 276 ----------~----~-~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~ 340 (806)
T 1ypw_A 276 ----------S----K-LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp ----------S----S-STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSC
T ss_pred ----------h----h-hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccccc
Confidence 0 0 0011112233344444344778999999953210 011111111 11234
Q ss_pred ceEEEEeCchhhhhhhc----CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCch
Q 003203 164 CKILLASRYRDILVSEM----HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGLP 228 (839)
Q Consensus 164 s~iivTtr~~~~~~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~P 228 (839)
..+|.||.......... .....+.+...+.++-.+++...+.......+.. ..++++.+.|..
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~--l~~la~~t~g~~ 407 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD--LEQVANETHGHV 407 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCC--THHHHHSCSSCC
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccch--hHHHHHhhcCcc
Confidence 56666666543321111 1234677888899999999988774432221110 234556666553
No 239
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.93 E-value=0.0018 Score=76.84 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=38.0
Q ss_pred ccccchHHHHHHHHHHhcCC---------CeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 35 KSFESRKSILCDILDWLTSP---------NVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..++|++..++.+...+... ....+.|+|++|+|||++|+.+++...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35799999888888877521 125789999999999999999998874
No 240
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.92 E-value=0.0073 Score=64.13 Aligned_cols=45 Identities=13% Similarity=-0.010 Sum_probs=35.8
Q ss_pred cccchHHHHHHHHHHhc------------------------------CCCeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 36 SFESRKSILCDILDWLT------------------------------SPNVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 36 ~fvgR~~~~~~l~~~l~------------------------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.++|.++.++.|...+. ......+.++|++|+|||++|+.+++..
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 47899988888887762 1123468899999999999999999876
No 241
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.92 E-value=0.0047 Score=61.93 Aligned_cols=85 Identities=11% Similarity=0.055 Sum_probs=56.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhcc-----CCCchHHH-HHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELC-----KGTESERA-RTLFDRL 131 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-~~~~~~l 131 (839)
++.|.|++|+||||||.+++.....+..-..++|++....++.. .++.++.+.+ .....+.+ ..+.+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 68999999999999999998877643112458898877776653 2556665432 12333333 3344444
Q ss_pred ---HcCCcEEEEEeCCCCc
Q 003203 132 ---WKENKILVILDDICTS 147 (839)
Q Consensus 132 ---~~~~~~LlVlDdv~~~ 147 (839)
..++.-++|+|-+...
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 3457889999998654
No 242
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.85 E-value=0.011 Score=61.80 Aligned_cols=163 Identities=9% Similarity=-0.089 Sum_probs=101.4
Q ss_pred HHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHH
Q 003203 49 DWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLF 128 (839)
Q Consensus 49 ~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 128 (839)
+.+...-.++..++|+.|.||++.|..+.+..... .|+....+.+....+..++...+..
T Consensus 11 ~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~------------------- 70 (343)
T 1jr3_D 11 AQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQA------------------- 70 (343)
T ss_dssp HHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHHH-------------------
T ss_pred HHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhcC-------------------
Confidence 33332345789999999999999999998877543 3432222223333344333322111
Q ss_pred HHHHcCCcEEEEEeCCCC-c--cccccccccCCCCCCCceEEEEeCc-------hhhhhhhcCccceEEccCCCHHHHHH
Q 003203 129 DRLWKENKILVILDDICT-S--IDLVTVGIPFGNAHRGCKILLASRY-------RDILVSEMHSQYNYCVSVLNKEEAWS 198 (839)
Q Consensus 129 ~~l~~~~~~LlVlDdv~~-~--~~~~~l~~~l~~~~~~s~iivTtr~-------~~~~~~~~~~~~~~~l~~L~~~ea~~ 198 (839)
..+ -+.+-++|+|+++. . ...+.+...+....+++.+|++|.. ..+..........++..+++.++..+
T Consensus 71 ~pl-f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 71 MSL-FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPR 149 (343)
T ss_dssp HHH-CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHH
T ss_pred cCC-ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHH
Confidence 111 25677889999876 3 4455565555544567777777653 12333233456789999999999999
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHHhCCchhHHHH
Q 003203 199 LFKKMVGDYVEDSDLESIAIQVANECGGLPLAIVI 233 (839)
Q Consensus 199 Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 233 (839)
.+.+.+......- ..+.++.+++.++|....+..
T Consensus 150 ~l~~~~~~~g~~i-~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 150 WVAARAKQLNLEL-DDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHHHTTCEE-CHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHhchHHHHHHH
Confidence 9988873322111 145577899999998876654
No 243
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.78 E-value=0.0011 Score=66.85 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=42.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCc
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENK 136 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (839)
+++.|+|++|+|||+||.+++.. . -..+.|++......+ .. ......+....+.+.+.+ .+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-~----G~~VlyIs~~~eE~v-----------~~--~~~~le~~l~~i~~~l~~-~~ 184 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-L----GGKDKYATVRFGEPL-----------SG--YNTDFNVFVDDIARAMLQ-HR 184 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-H----HTTSCCEEEEBSCSS-----------TT--CBCCHHHHHHHHHHHHHH-CS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-C----CCCEEEEEecchhhh-----------hh--hhcCHHHHHHHHHHHHhh-CC
Confidence 56789999999999999999886 2 123456666211110 00 002223333444555543 44
Q ss_pred EEEEEeCCCC
Q 003203 137 ILVILDDICT 146 (839)
Q Consensus 137 ~LlVlDdv~~ 146 (839)
+||+|++..
T Consensus 185 -LLVIDsI~a 193 (331)
T 2vhj_A 185 -VIVIDSLKN 193 (331)
T ss_dssp -EEEEECCTT
T ss_pred -EEEEecccc
Confidence 999999864
No 244
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.75 E-value=0.001 Score=76.36 Aligned_cols=174 Identities=13% Similarity=0.209 Sum_probs=85.6
Q ss_pred CCCccccchHHHHHHHHHHhcC-------------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC
Q 003203 32 QGYKSFESRKSILCDILDWLTS-------------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA 98 (839)
Q Consensus 32 ~~~~~fvgR~~~~~~l~~~l~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 98 (839)
.....+.|-++..++|.+.+.- ...+-+.++|++|.|||.+|+++++..... ++.++.
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~~-- 544 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIKG-- 544 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECCH--
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-------eEEecc--
Confidence 3345677888777777766541 123457899999999999999999877521 333332
Q ss_pred CHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCcEEEEEeCCCCccc----------------cccccccCCC--C
Q 003203 99 NVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENKILVILDDICTSID----------------LVTVGIPFGN--A 160 (839)
Q Consensus 99 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlVlDdv~~~~~----------------~~~l~~~l~~--~ 160 (839)
. ++++ .... .....+..+++...+..+.+|++|+++.... ..++...+.. .
T Consensus 545 --~----~l~s----~~vG-ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 545 --P----ELLT----MWFG-ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp --H----HHHT----TTCS-SCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred --c----hhhc----cccc-hHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 1 1121 1111 2234566677776667899999999974310 1111111111 1
Q ss_pred CCCceEEEEeCchhhhh-hhc---CccceEEccCCCHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHhCCc
Q 003203 161 HRGCKILLASRYRDILV-SEM---HSQYNYCVSVLNKEEAWSLFKKMVGDYVEDSDLESIAIQVANECGGL 227 (839)
Q Consensus 161 ~~~s~iivTtr~~~~~~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~I~~~~~G~ 227 (839)
..+.-||-||...+... ... .-...+.++.-+.++-.++|+.+..+.....+.. ...+++.+.|.
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~d--l~~la~~t~g~ 682 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD--LEFLAKMTNGF 682 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC---------------
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCC--HHHHHHhCCCC
Confidence 22333444555444321 111 2356777877777777788877775433222221 34566666664
No 245
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.73 E-value=0.0021 Score=65.87 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=41.0
Q ss_pred CCCccccc----hHHHHHHHHHHhcCC---CeeEEEEEcCCCCcHHHHHHHHHHHHH-HhccCCeEEEEEE
Q 003203 32 QGYKSFES----RKSILCDILDWLTSP---NVNMIGVYGIGGVGKTALMHEVLFEAK-KQNLFDQVIFVLA 94 (839)
Q Consensus 32 ~~~~~fvg----R~~~~~~l~~~l~~~---~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~~~f~~~~wv~~ 94 (839)
...+.|++ +...++.+.+++... ..+.+.|+|++|+|||+||..+++... .+ . ..+.++++
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~-g-~~v~~~~~ 189 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-G-VSTTLLHF 189 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS-C-CCEEEEEH
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc-C-CcEEEEEH
Confidence 45667775 334455555666531 246888999999999999999999876 43 2 23455543
No 246
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.71 E-value=0.0016 Score=58.65 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=29.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEe
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLAS 95 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 95 (839)
....++|+|+.|+|||||++.++...... .+ .+++++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHH
Confidence 44689999999999999999999987642 11 25565543
No 247
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.71 E-value=0.0056 Score=63.01 Aligned_cols=103 Identities=15% Similarity=0.158 Sum_probs=54.1
Q ss_pred HHHHHHhc-CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC-CHHHHHHHHHHHhhhhccCCCchH
Q 003203 45 CDILDWLT-SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA-NVKRIQDEIADQLCLELCKGTESE 122 (839)
Q Consensus 45 ~~l~~~l~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~ 122 (839)
-++++.+. =.+-+.++|+|++|+|||||++.+.+....+..--.++++-+++.. .+.++.+.+-..+-....++....
T Consensus 162 iraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~ 241 (422)
T 3ice_A 162 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASR 241 (422)
T ss_dssp HHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHH
T ss_pred ceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHH
Confidence 34455554 2334689999999999999999998877643211124456565442 222222222000000111111111
Q ss_pred H------HHHHHHHHH-cCCcEEEEEeCCCCc
Q 003203 123 R------ARTLFDRLW-KENKILVILDDICTS 147 (839)
Q Consensus 123 ~------~~~~~~~l~-~~~~~LlVlDdv~~~ 147 (839)
. ...+-+++. +++.+||++||+-..
T Consensus 242 r~~~a~~alt~AEyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 242 HVQVAEMVIEKAKRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp HHHHHHHHHHHHHHHHHTSCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEeCchHH
Confidence 1 111222332 479999999998543
No 248
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.62 E-value=0.0071 Score=58.59 Aligned_cols=43 Identities=23% Similarity=0.230 Sum_probs=32.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQ 104 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 104 (839)
.+++|.|++|+||||+|.+++. . . -..++|++.....+...+.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~--~-~--~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL--L-S--GKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--H-H--CSEEEEEESSCCCCHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH--H-c--CCcEEEEECCCCCCHHHHH
Confidence 5899999999999999999988 2 1 2467888766544555443
No 249
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.59 E-value=0.0081 Score=62.21 Aligned_cols=84 Identities=23% Similarity=0.310 Sum_probs=52.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhcc-----CCCchHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELC-----KGTESERARTLFDRL 131 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~l 131 (839)
+++.|.|++|+||||||.+++...... -..++|++.....+.. .++.++.... .....+......+.+
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l 134 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDEL 134 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHH
Confidence 699999999999999999999887643 2347788776665543 3444443321 122223322333333
Q ss_pred H-cCCcEEEEEeCCCCc
Q 003203 132 W-KENKILVILDDICTS 147 (839)
Q Consensus 132 ~-~~~~~LlVlDdv~~~ 147 (839)
. ..+.-++|+|.+...
T Consensus 135 ~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 135 VRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHTSCCSEEEEECTTTC
T ss_pred hhhcCCCeEEehHhhhh
Confidence 2 345568999998643
No 250
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.57 E-value=0.0033 Score=61.71 Aligned_cols=46 Identities=22% Similarity=0.293 Sum_probs=31.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDE 106 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 106 (839)
.+++|.|++|+|||||++.++...... -..++|+... .....+...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~--~~~~~~~~~ 69 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTE--ESRDSIIRQ 69 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESS--SCHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEcc--cCHHHHHHH
Confidence 589999999999999999999776533 2246665443 234444333
No 251
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.55 E-value=0.0095 Score=58.72 Aligned_cols=89 Identities=13% Similarity=0.136 Sum_probs=51.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhc----cCCeEEEEEEecCCCHHHHHHHHHHHhhhhc----------cCCCchH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQN----LFDQVIFVLASSTANVKRIQDEIADQLCLEL----------CKGTESE 122 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------~~~~~~~ 122 (839)
.+++|+|++|+||||||.+++....... .-..++|++....+....+. ++++.++... ......+
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTDH 103 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence 5899999999999999999987532211 12468888776654444442 3334443221 1111111
Q ss_pred ---HHHHHHHHHHcCCcEEEEEeCCCC
Q 003203 123 ---RARTLFDRLWKENKILVILDDICT 146 (839)
Q Consensus 123 ---~~~~~~~~l~~~~~~LlVlDdv~~ 146 (839)
....+.+.+...+.-++|+|++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 104 QTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 122233333335677889998754
No 252
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.27 E-value=0.013 Score=61.07 Aligned_cols=56 Identities=27% Similarity=0.376 Sum_probs=39.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhc----cCCeEEEEEEecCCCHHHHHHHHHHHhh
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQN----LFDQVIFVLASSTANVKRIQDEIADQLC 112 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 112 (839)
-.++.|+|++|+||||+|.+++....... .-..++|++....++...+.. ++..++
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 36899999999999999999987643211 124688998877766665543 344443
No 253
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.23 E-value=0.013 Score=60.97 Aligned_cols=83 Identities=19% Similarity=0.271 Sum_probs=52.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhcc-----CCCchHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELC-----KGTESERARTLFDRL 131 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~l 131 (839)
+++.|.|++|+||||||.+++...... -..++|++.....+.. .++.++.... .....+....+.+.+
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l 134 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADML 134 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 689999999999999999998876543 2458888887666543 2444443221 112233333344444
Q ss_pred H-cCCcEEEEEeCCCC
Q 003203 132 W-KENKILVILDDICT 146 (839)
Q Consensus 132 ~-~~~~~LlVlDdv~~ 146 (839)
. ..+.-+||+|.+..
T Consensus 135 ~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 135 VRSGALDIIVIDSVAA 150 (349)
T ss_dssp HTTTCCSEEEEECGGG
T ss_pred HhcCCCCEEEEcChHh
Confidence 3 33566899999854
No 254
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.20 E-value=0.0056 Score=58.41 Aligned_cols=44 Identities=14% Similarity=0.217 Sum_probs=35.6
Q ss_pred chHHHHHHHHHHhcC---CCeeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 39 SRKSILCDILDWLTS---PNVNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 39 gR~~~~~~l~~~l~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
+|++.++++.+.+.. ....+|+|.|+.|+||||+++.+......
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 466778888887763 34579999999999999999999887654
No 255
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.18 E-value=0.011 Score=63.14 Aligned_cols=89 Identities=20% Similarity=0.338 Sum_probs=51.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC-CHHHHHHHHHHHhhh-------hccCCCchHH-----
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA-NVKRIQDEIADQLCL-------ELCKGTESER----- 123 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~----- 123 (839)
+.++|+|.+|+||||||+.+......+. -+.++++-+++.. ...++..++...=.. ....+.....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~-~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEH-GGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHT-CCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhcc-CcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 3688999999999999999998876542 2345666555443 344555544332000 0011111111
Q ss_pred -HHHHHHHHH--cCCcEEEEEeCCCC
Q 003203 124 -ARTLFDRLW--KENKILVILDDICT 146 (839)
Q Consensus 124 -~~~~~~~l~--~~~~~LlVlDdv~~ 146 (839)
...+-+++. +++++|+++||+..
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 123334443 48999999999953
No 256
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.14 E-value=0.016 Score=60.43 Aligned_cols=83 Identities=20% Similarity=0.275 Sum_probs=52.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhcc-----CCCchHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELC-----KGTESERARTLFDRL 131 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~l 131 (839)
+++.|.|.+|+||||||.+++...... -..++|++....++.. .++.++.... .....+......+.+
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l 147 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELL 147 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHH
Confidence 588999999999999999998877543 2368899887766543 2344443211 112233333344444
Q ss_pred Hc-CCcEEEEEeCCCC
Q 003203 132 WK-ENKILVILDDICT 146 (839)
Q Consensus 132 ~~-~~~~LlVlDdv~~ 146 (839)
.. +..-+||+|.+..
T Consensus 148 ~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 148 VRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HTTTCCSEEEEECTTT
T ss_pred HhcCCCCEEEEeChHH
Confidence 32 3456899999854
No 257
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.11 E-value=0.019 Score=59.34 Aligned_cols=55 Identities=24% Similarity=0.347 Sum_probs=39.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcc----CCeEEEEEEecCCCHHHHHHHHHHHhh
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNL----FDQVIFVLASSTANVKRIQDEIADQLC 112 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~ 112 (839)
.++.|+|++|+||||+|.+++........ -..++|++....++..++. ++++.++
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g 166 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALG 166 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhC
Confidence 58999999999999999999876532110 2368898887776666654 3344444
No 258
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.06 E-value=0.018 Score=59.84 Aligned_cols=83 Identities=20% Similarity=0.323 Sum_probs=52.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhcc-----CCCchHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELC-----KGTESERARTLFDRL 131 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~l 131 (839)
+++.|.|.+|+||||||.+++...... -..++|++....++... +..++.... .....+....+.+.+
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~l 136 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 136 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHHH
Confidence 689999999999999999999877643 23688888877665432 344443221 112233333344444
Q ss_pred H-cCCcEEEEEeCCCC
Q 003203 132 W-KENKILVILDDICT 146 (839)
Q Consensus 132 ~-~~~~~LlVlDdv~~ 146 (839)
. ..+.-+||+|.+..
T Consensus 137 ~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 137 ARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHTCCSEEEEECGGG
T ss_pred HhccCCCEEEEcCHHH
Confidence 2 34556899999753
No 259
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.04 E-value=0.019 Score=59.36 Aligned_cols=55 Identities=20% Similarity=0.331 Sum_probs=38.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhc---------cC-----CeEEEEEEecCCCHHHHHHHHHHHhh
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQN---------LF-----DQVIFVLASSTANVKRIQDEIADQLC 112 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~i~~~l~ 112 (839)
.++.|+|++|+||||+|.+++....... .. ..++|++....++..++.+ +++.++
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g 167 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAG 167 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 6899999999999999999987632110 11 3688888877766666653 344444
No 260
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.93 E-value=0.0039 Score=65.59 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=39.3
Q ss_pred cCCCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 29 RSNQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.++.....++|.+...+.+..........-+.|+|++|+|||++|+.+++...
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34556678999998766655444433334588999999999999999998764
No 261
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.93 E-value=0.008 Score=57.67 Aligned_cols=41 Identities=20% Similarity=0.387 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcC--CCeeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 42 SILCDILDWLTS--PNVNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 42 ~~~~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
+.+++|.+.+.. .+..+|+|+|+.|+|||||++.+......
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 456666676653 45579999999999999999999887764
No 262
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.88 E-value=0.022 Score=57.73 Aligned_cols=40 Identities=18% Similarity=0.348 Sum_probs=29.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEe
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLAS 95 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 95 (839)
+.++++|+|++|+||||++..++........ ..+..+...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecC
Confidence 3569999999999999999999988764222 235555443
No 263
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.87 E-value=0.015 Score=61.37 Aligned_cols=88 Identities=14% Similarity=0.188 Sum_probs=50.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhc----cCCeEEEEEEecCCCHHHHHHHHHHHhhhhcc---------CCCch--
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQN----LFDQVIFVLASSTANVKRIQDEIADQLCLELC---------KGTES-- 121 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~-- 121 (839)
.++.|+|++|+|||||+.+++-...... .-..++|++....+....+ ..+++.++.... .....
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~~ 257 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNADH 257 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChHH
Confidence 5999999999999999998764432111 2245888877665555444 335555543210 11111
Q ss_pred --HHHHHHHHHHHcCCcEEEEEeCCC
Q 003203 122 --ERARTLFDRLWKENKILVILDDIC 145 (839)
Q Consensus 122 --~~~~~~~~~l~~~~~~LlVlDdv~ 145 (839)
+....+.+.+...+.-+||+|.+.
T Consensus 258 ~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 258 QLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHhcCCceEEecchh
Confidence 122222333333467788888864
No 264
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.61 E-value=0.058 Score=55.30 Aligned_cols=50 Identities=16% Similarity=0.096 Sum_probs=37.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQ 110 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 110 (839)
.++.|.|.+|+||||+|.+++.....++ ..++|++.. .+..++...+...
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 6899999999999999999998776442 467777654 4566666666544
No 265
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.56 E-value=0.049 Score=57.74 Aligned_cols=124 Identities=19% Similarity=0.178 Sum_probs=74.5
Q ss_pred CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCccccc-CccccCCCCCcEEEccCCCcCC--CcccCCCCCCCE
Q 003203 404 EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSL-PPSVHLLSNLQTLCLDQCVVGD--ISIIGNLKKLEI 480 (839)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~ 480 (839)
.+.+|+.+.+..+ ...+....|.++..|+.+.+..+ ++.+ ...+.++.+|+.+.+..+ +.. ...+.++.+|+.
T Consensus 215 ~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 215 YGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred cccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 4555666655433 34455556667777777777654 3434 234556667777776543 222 245666777777
Q ss_pred EEccCCCCCCCch-hhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccC
Q 003203 481 LSLVDSDIERLPN-EIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGN 533 (839)
Q Consensus 481 L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~ 533 (839)
+.+.++.++.++. .+.++.+|+.+.+.. .++.+....+.++++|+.+.+..
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC
Confidence 7777666666643 356667777777754 26666665566777777766643
No 266
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.55 E-value=0.0068 Score=63.09 Aligned_cols=153 Identities=10% Similarity=0.067 Sum_probs=83.4
Q ss_pred CccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhh
Q 003203 34 YKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCL 113 (839)
Q Consensus 34 ~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 113 (839)
...++|+++.++.+...+..+ .-+.++|++|+|||++|+.+++.... . ...+.........++. +.
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~~--~---~~~i~~~~~~~~~~l~-------g~ 91 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMDL--D---FHRIQFTPDLLPSDLI-------GT 91 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTTC--C---EEEEECCTTCCHHHHH-------EE
T ss_pred ccceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhCC--C---eEEEecCCCCChhhcC-------Cc
Confidence 356899999999998888754 36789999999999999999886632 1 2233333333333221 11
Q ss_pred hccCCCchHHHHHHHHHHHcC--CcEEEEEeCCCCcc--ccccccccCC-----------CCCCCceEEEEeCchh----
Q 003203 114 ELCKGTESERARTLFDRLWKE--NKILVILDDICTSI--DLVTVGIPFG-----------NAHRGCKILLASRYRD---- 174 (839)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~--~~~LlVlDdv~~~~--~~~~l~~~l~-----------~~~~~s~iivTtr~~~---- 174 (839)
......... . ....+ ...++++|+++... ....+...+. .......|+.|++...
T Consensus 92 ~~~~~~~~~-----~-~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~ 165 (331)
T 2r44_A 92 MIYNQHKGN-----F-EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGT 165 (331)
T ss_dssp EEEETTTTE-----E-EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCC
T ss_pred eeecCCCCc-----e-EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCc
Confidence 000000000 0 00011 12588999997542 1111111100 1123455555555222
Q ss_pred --hhhhhcCc-cceEEccCCCHHHHHHHHHHHhCC
Q 003203 175 --ILVSEMHS-QYNYCVSVLNKEEAWSLFKKMVGD 206 (839)
Q Consensus 175 --~~~~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~ 206 (839)
+....... ...+.+++.+.++-.+++.+..+.
T Consensus 166 ~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 166 YPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp CCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred ccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 11111112 235889999999999999988743
No 267
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.52 E-value=0.0079 Score=55.63 Aligned_cols=25 Identities=20% Similarity=0.104 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.+|+|.|+.|+||||+|+.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987764
No 268
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.51 E-value=0.0075 Score=56.15 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.+|.|.|++|+||||+|+.+..+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999987764
No 269
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.45 E-value=0.07 Score=56.73 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=25.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
..+|.++|.+|+||||++.+++..+..+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 5799999999999999999999888754
No 270
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.38 E-value=0.048 Score=55.60 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHhcC----CCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 39 SRKSILCDILDWLTS----PNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 39 gR~~~~~~l~~~l~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
|..+.+..+...+.. ....+|+|.|+.|+||||+|+.+..-..
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 334444444444332 2345899999999999999999877664
No 271
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.32 E-value=0.14 Score=54.74 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=36.3
Q ss_pred HHHHHHHHhcC---------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEe
Q 003203 43 ILCDILDWLTS---------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLAS 95 (839)
Q Consensus 43 ~~~~l~~~l~~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 95 (839)
..+++.+.+.. ...++|.++|.+|+||||+|..++..+..+... .+..+...
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D 138 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKK-KVLVVSAD 138 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEECC
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEEecC
Confidence 44556666642 235799999999999999999999988754122 34555544
No 272
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.31 E-value=0.021 Score=58.50 Aligned_cols=45 Identities=18% Similarity=0.216 Sum_probs=33.9
Q ss_pred cchHHHHHHHHHHhc----CCCeeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 38 ESRKSILCDILDWLT----SPNVNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 38 vgR~~~~~~l~~~l~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
++-++.++++++.+. .++...|+|+|+.|+||||+++.++.....
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 344555666666653 555667999999999999999999988764
No 273
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.31 E-value=0.0095 Score=61.18 Aligned_cols=51 Identities=16% Similarity=0.166 Sum_probs=35.1
Q ss_pred HHHHHHhcC-CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCe-EEEEEEec
Q 003203 45 CDILDWLTS-PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQ-VIFVLASS 96 (839)
Q Consensus 45 ~~l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~ 96 (839)
-++++.+.. .+-+.++|+|.+|+|||+|+.++++..... +-+. ++++-+++
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~-~~dv~~V~~lIGE 215 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAEN-HPDTIRIILLIDE 215 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHH-CTTSEEEEEECSC
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhc-CCCeEEEEEEecc
Confidence 455666652 334678999999999999999999887643 2232 35555554
No 274
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.30 E-value=0.015 Score=56.59 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 41 KSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 41 ~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
++..+.+...+.......|+|+|.+|+|||||+.++.....
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34455566655556678999999999999999999988754
No 275
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.29 E-value=0.011 Score=56.25 Aligned_cols=26 Identities=27% Similarity=0.207 Sum_probs=23.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.++|+|+|++|+||||+|+.+.....
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999998773
No 276
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.27 E-value=0.051 Score=53.67 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFE 79 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~ 79 (839)
.+++|.|+.|+|||||++.++..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 68999999999999999998854
No 277
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.27 E-value=0.085 Score=55.84 Aligned_cols=115 Identities=12% Similarity=0.202 Sum_probs=89.7
Q ss_pred CCCCccEEeecCCCCCCCCChhhhcCCCCccEEEeCCCcccccC-ccccCCCCCcEEEccCCCcCCC--cccCCCCCCCE
Q 003203 404 EYPQLDFFCMNSKDPFFKMPENFFTGMSKLRGLALSEMQLLSLP-PSVHLLSNLQTLCLDQCVVGDI--SIIGNLKKLEI 480 (839)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~ 480 (839)
.+..|+.+.+..+ ...+....|.++.+|+.+.+..+ +..++ ..+..+.+|+.+.+.++.++.+ ..|.++.+|+.
T Consensus 238 ~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 238 GMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp TCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred CCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence 7888999988654 56778888999999999999754 55554 4678899999999998877764 67889999999
Q ss_pred EEccCCCCCCCch-hhcCCCccCeEecCCCcCCCccCchhhcCcc
Q 003203 481 LSLVDSDIERLPN-EIGQLTQLRCLDLSFCRNLKVIPPNVISKLT 524 (839)
Q Consensus 481 L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~ 524 (839)
+.+..+ ++.++. .+.++++|+.+.+.. .++.+....+.+..
T Consensus 315 i~lp~~-l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~~aF~~c~ 356 (379)
T 4h09_A 315 VTLPTA-LKTIQVYAFKNCKALSTISYPK--SITLIESGAFEGSS 356 (379)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCCCCCCT--TCCEECTTTTTTSS
T ss_pred EEcCcc-ccEEHHHHhhCCCCCCEEEECC--ccCEEchhHhhCCC
Confidence 999754 666654 577889999998865 36777766666654
No 278
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.26 E-value=0.013 Score=54.90 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=25.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
...+|+|.|++|+||||+|+.++......
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999999987643
No 279
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.26 E-value=0.011 Score=55.50 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.+.|+|+|+.|+||||+|+.+.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999988763
No 280
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.24 E-value=0.047 Score=58.31 Aligned_cols=99 Identities=20% Similarity=0.293 Sum_probs=61.5
Q ss_pred HHHHhc-CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC-CHHHHHHHHHHHhhhh--------c-
Q 003203 47 ILDWLT-SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA-NVKRIQDEIADQLCLE--------L- 115 (839)
Q Consensus 47 l~~~l~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~--------~- 115 (839)
.++.+. =.+-+.++|+|.+|+|||+|+.++++.... .+-+.++++-+++.. ...++++++...=... .
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtv 233 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVA 233 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceE
Confidence 344444 223357899999999999999999987643 234677888777654 4566666665431111 0
Q ss_pred -----cCCC------chHHHHHHHHHHHc--CCcEEEEEeCCCC
Q 003203 116 -----CKGT------ESERARTLFDRLWK--ENKILVILDDICT 146 (839)
Q Consensus 116 -----~~~~------~~~~~~~~~~~l~~--~~~~LlVlDdv~~ 146 (839)
..+. .......+-+++.. ++.+|+++||+-.
T Consensus 234 vV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 234 LVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp EEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 0111 11223344455544 7999999999853
No 281
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.18 E-value=0.01 Score=55.13 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEV 76 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~ 76 (839)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 282
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.15 E-value=0.011 Score=64.61 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=38.1
Q ss_pred ccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 35 KSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..++|++..++.+...+..+ .-|.|+|++|+|||+||+.+++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 45899999999888887755 4678999999999999999987653
No 283
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.11 E-value=0.015 Score=55.24 Aligned_cols=29 Identities=24% Similarity=0.224 Sum_probs=25.5
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 53 SPNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 53 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.....+|+|+|++|+||||+|+.+.....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34457999999999999999999998876
No 284
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.11 E-value=0.012 Score=54.85 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
++++|+|+.|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 6899999999999999999987653
No 285
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.08 E-value=0.055 Score=52.59 Aligned_cols=43 Identities=28% Similarity=0.354 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhc----cCCeEEEEEEecCCC
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQN----LFDQVIFVLASSTAN 99 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~ 99 (839)
.+++|+|+.|+|||||++.++....... ....++|+.-.....
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 6999999999999999999987543210 123477776544333
No 286
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.08 E-value=0.021 Score=52.04 Aligned_cols=29 Identities=31% Similarity=0.385 Sum_probs=25.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
..++++|.|+.|+||||++.++...++.+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35789999999999999999999988743
No 287
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.07 E-value=0.014 Score=55.09 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
.+|+|.|++|+||||+|+.+...+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998763
No 288
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.06 E-value=0.029 Score=56.62 Aligned_cols=29 Identities=17% Similarity=0.058 Sum_probs=25.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 54 PNVNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 54 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
.+..+|+|.|+.|+||||||+.+...+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 44579999999999999999999888764
No 289
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.06 E-value=0.043 Score=52.09 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
+|.|.|++|+||+|.|+.++.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998764
No 290
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.03 E-value=0.019 Score=53.44 Aligned_cols=114 Identities=15% Similarity=0.062 Sum_probs=60.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC---CCHHHHHHHHHHHhhhh-------c--cCCC---c
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST---ANVKRIQDEIADQLCLE-------L--CKGT---E 120 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~-------~--~~~~---~ 120 (839)
...|.|++..|.||||.|-..+-+..... ..+.++..... .....++ +.++.. . .... .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G--~rV~~vQF~Kg~~~~gE~~~l----~~L~v~~~~~g~gf~~~~~~~~~~ 101 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHG--KNVGVVQFIKGTWPNGERNLL----EPHGVEFQVMATGFTWETQNREAD 101 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTT--CCEEEEESSCCSSCCHHHHHH----GGGTCEEEECCTTCCCCGGGHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEEeeCCCCCccHHHHH----HhCCcEEEEcccccccCCCCcHHH
Confidence 35677777778999999999888776432 23444433322 2223333 333200 0 0000 0
Q ss_pred ----hHHHHHHHHHHHcCCcEEEEEeCCCCc-----cccccccccCCCCCCCceEEEEeCchhh
Q 003203 121 ----SERARTLFDRLWKENKILVILDDICTS-----IDLVTVGIPFGNAHRGCKILLASRYRDI 175 (839)
Q Consensus 121 ----~~~~~~~~~~l~~~~~~LlVlDdv~~~-----~~~~~l~~~l~~~~~~s~iivTtr~~~~ 175 (839)
........+.+..++-=|||||++... ...+.+...+.....+.-||+|+|...-
T Consensus 102 ~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 102 TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHR 165 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCH
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcH
Confidence 111222333333344559999998432 2223333334444567789999998653
No 291
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.02 E-value=0.013 Score=54.54 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLF 78 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~ 78 (839)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 292
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.02 E-value=0.017 Score=58.99 Aligned_cols=41 Identities=20% Similarity=0.359 Sum_probs=32.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec
Q 003203 54 PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS 96 (839)
Q Consensus 54 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 96 (839)
++.++|+|.|-|||||||.|..++.-+...+ ..+.-+.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~G--kkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 4568999999999999999999998887652 3467777764
No 293
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.01 E-value=0.021 Score=60.24 Aligned_cols=46 Identities=15% Similarity=-0.008 Sum_probs=37.1
Q ss_pred cccchHHHHHHHHHHhc-------------C--CCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 36 SFESRKSILCDILDWLT-------------S--PNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 36 ~fvgR~~~~~~l~~~l~-------------~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.++|.+..++.+...+. . ...+.+.++|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36899999999888872 1 1235688999999999999999998763
No 294
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.01 E-value=0.015 Score=55.38 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=23.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 54 PNVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 54 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
....+|+|.|+.|+||||+|+.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999998766
No 295
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.01 E-value=0.074 Score=52.29 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS 96 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 96 (839)
.++.|.|++|+||||+|.+++...... -..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccC
Confidence 589999999999999999988776533 23577776443
No 296
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.00 E-value=0.011 Score=54.90 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
|.|+|.|++|+|||||++++..+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5688999999999999999887654
No 297
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.98 E-value=0.07 Score=56.72 Aligned_cols=99 Identities=19% Similarity=0.310 Sum_probs=59.8
Q ss_pred HHHHhcC-CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC-CHHHHHHHHHHHhhhh----------
Q 003203 47 ILDWLTS-PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA-NVKRIQDEIADQLCLE---------- 114 (839)
Q Consensus 47 l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~---------- 114 (839)
.++.+.. .+-+.++|+|.+|+|||+|+.++++.... .+-+.++++-+++.. .+.++.+++...=...
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvv 221 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVAL 221 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEE
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEE
Confidence 4455541 22367899999999999999999987642 234567777776553 4556666665431111
Q ss_pred ---ccCCCch------HHHHHHHHHHH--cCCcEEEEEeCCCC
Q 003203 115 ---LCKGTES------ERARTLFDRLW--KENKILVILDDICT 146 (839)
Q Consensus 115 ---~~~~~~~------~~~~~~~~~l~--~~~~~LlVlDdv~~ 146 (839)
..++... .....+-+++. +++.+|+++||+-.
T Consensus 222 V~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 222 VYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 0111111 12233444444 37999999999853
No 298
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.96 E-value=0.016 Score=56.14 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 40 RKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 40 R~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..+..+++.+.+...+.++|+|+|.+|+|||||+.++.....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344556666666556778999999999999999999988764
No 299
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.93 E-value=0.017 Score=54.48 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999998776
No 300
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.92 E-value=0.043 Score=57.14 Aligned_cols=46 Identities=24% Similarity=0.261 Sum_probs=31.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccC----CeEEEEEEecCCCHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLF----DQVIFVLASSTANVK 101 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f----~~~~wv~~~~~~~~~ 101 (839)
-.++.|+|+.|+|||||+.+++......... ..++|++....+...
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~ 180 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 180 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHH
Confidence 3699999999999999999998765211111 245888766554333
No 301
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.92 E-value=0.014 Score=54.97 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFE 79 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~ 79 (839)
..+++|+|++|+||||+++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999764
No 302
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.92 E-value=0.012 Score=56.03 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998876
No 303
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.92 E-value=0.014 Score=54.51 Aligned_cols=82 Identities=13% Similarity=0.174 Sum_probs=46.2
Q ss_pred cCCCCccEEEeCCC-ccc-----ccCccccCCCCCcEEEccCCCcCCC------cccCCCCCCCEEEccCCCCC-----C
Q 003203 428 TGMSKLRGLALSEM-QLL-----SLPPSVHLLSNLQTLCLDQCVVGDI------SIIGNLKKLEILSLVDSDIE-----R 490 (839)
Q Consensus 428 ~~l~~L~~L~l~~~-~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~------~~~~~l~~L~~L~l~~~~l~-----~ 490 (839)
.+-+.|+.|+|+++ .+. .+-..+..-..|+.|+|++|.+.+. ..+..-+.|++|+|++|.|. .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34456777777764 553 2344455556677777777766541 22334456777777777665 2
Q ss_pred CchhhcCCCccCeEecCCC
Q 003203 491 LPNEIGQLTQLRCLDLSFC 509 (839)
Q Consensus 491 lp~~i~~l~~L~~L~l~~~ 509 (839)
+-+.+..-+.|++|++++|
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 2333444455666666643
No 304
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.92 E-value=0.012 Score=54.37 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.+|+|+|+.|+||||+++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987653
No 305
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.92 E-value=0.13 Score=52.22 Aligned_cols=52 Identities=25% Similarity=0.202 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcC--------CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEE
Q 003203 41 KSILCDILDWLTS--------PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLA 94 (839)
Q Consensus 41 ~~~~~~l~~~l~~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 94 (839)
....++|.+.+.. ....+++|+|++|+||||++..++...... -..+.++..
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~ 140 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAA 140 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEE
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEcc
Confidence 3445556666542 234699999999999999999999888653 223555544
No 306
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.91 E-value=0.016 Score=54.58 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
.+|+|.|++|+||||+|+.+......
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999987753
No 307
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.87 E-value=0.016 Score=57.31 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
++|+|.|+.|+||||+|+.++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999988764
No 308
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.86 E-value=0.014 Score=54.33 Aligned_cols=26 Identities=35% Similarity=0.376 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.++|.|.|++|+||||+|+.+.....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999987763
No 309
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.85 E-value=0.017 Score=53.15 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.++|+|.|+.|+||||+|+.+...+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988764
No 310
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.83 E-value=0.11 Score=55.09 Aligned_cols=37 Identities=30% Similarity=0.325 Sum_probs=28.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEE
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLA 94 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 94 (839)
.++|+++|++|+||||++..++..+..++ ..+..+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G--~kVllv~~ 133 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRG--YKVGLVAA 133 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTT--CCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEec
Confidence 57999999999999999999998887542 23444444
No 311
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.81 E-value=0.17 Score=51.10 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=47.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCC-HHHHHHHHHHHhhhhcc----CCCchHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTAN-VKRIQDEIADQLCLELC----KGTESERARTLFDR 130 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~~~ 130 (839)
..+++++|.+|+||||++..++.....+ -..+.++....... ..+.++......+.... ..+..+......+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999887654 22455655443222 22222333333332211 11223333344444
Q ss_pred HHcCCcEEEEEeCC
Q 003203 131 LWKENKILVILDDI 144 (839)
Q Consensus 131 l~~~~~~LlVlDdv 144 (839)
+....-=++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 43222236777864
No 312
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.77 E-value=0.12 Score=53.00 Aligned_cols=62 Identities=13% Similarity=0.112 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHH
Q 003203 43 ILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQ 110 (839)
Q Consensus 43 ~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 110 (839)
.++++..-+..+ .++.|.|.+|+||||+|.+++...... -..+.|++. .-+..++...++..
T Consensus 35 ~LD~~~gGl~~G--~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 35 QLDNYTSGFNKG--SLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp HHHHHHCSBCTT--CEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEES--SSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeC--CCCHHHHHHHHHHH
Confidence 455554322233 589999999999999999999887652 234666654 44566666666544
No 313
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.75 E-value=0.23 Score=53.91 Aligned_cols=38 Identities=21% Similarity=0.412 Sum_probs=28.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEE
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLA 94 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 94 (839)
+.++|+|+|.+|+||||++.+++.....++ . .+..++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G-~-kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKG-W-KTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTT-C-CEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC-C-eEEEEec
Confidence 356899999999999999999998887542 2 3444444
No 314
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.75 E-value=0.02 Score=53.07 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
..+++|+|+.|+||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999998765
No 315
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.74 E-value=0.015 Score=53.87 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.|+|.|++|+||||+|+.++....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999988764
No 316
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.71 E-value=0.014 Score=56.15 Aligned_cols=110 Identities=12% Similarity=0.080 Sum_probs=60.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHc--
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWK-- 133 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~-- 133 (839)
-.++.|+|..|+||||++.+++++...+. ..++.+..... .. ...++++.++........ .....+++.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g--~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~-~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYAD--VKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEV-ESAPEILNYIMSNS 85 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEE-SSTHHHHHHHHSTT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEEeccC--ch-HHHHHHHhcCCCcccccc-CCHHHHHHHHHHHh
Confidence 46899999999999999999999887542 23444433221 11 222444444432211100 111223333332
Q ss_pred --CCcEEEEEeCCCCc--cccccccccCCCCCCCceEEEEeCchh
Q 003203 134 --ENKILVILDDICTS--IDLVTVGIPFGNAHRGCKILLASRYRD 174 (839)
Q Consensus 134 --~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~~ 174 (839)
++.-+||+|.+... ++++.+.. +.+ .|..||+|-+..+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEecccc
Confidence 23459999999753 23333322 112 2678999888543
No 317
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.71 E-value=0.047 Score=47.47 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=40.7
Q ss_pred EEEccCCCCC--CCchhhcCCCccCeEecCCCcCCCccCchhhcCccccCeEEccCCccc
Q 003203 480 ILSLVDSDIE--RLPNEIGQLTQLRCLDLSFCRNLKVIPPNVISKLTQLEELYMGNTSVK 537 (839)
Q Consensus 480 ~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 537 (839)
.++.++++++ .+|..+ -.+|++|+|++|. ++.+|.+.+..+++|+.|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence 5677777777 777643 2468888888876 77888777788888888888887754
No 318
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.69 E-value=0.026 Score=52.66 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=29.1
Q ss_pred HHHHHHHHhcC-CCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 43 ILCDILDWLTS-PNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 43 ~~~~l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
-+..+..++.. ++...+.|+|++|+||||+|..+++...
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35555555543 2234799999999999999999998874
No 319
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.69 E-value=0.022 Score=54.46 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=24.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
+.++|.|.|++|+||||.|+.++.++.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 458999999999999999999998764
No 320
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.65 E-value=0.019 Score=54.90 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..++++|+|+.|+||||+++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 347899999999999999999987653
No 321
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.59 E-value=0.017 Score=55.12 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.++|+|+|++|+||||+++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999987663
No 322
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.56 E-value=0.044 Score=53.84 Aligned_cols=27 Identities=15% Similarity=0.004 Sum_probs=23.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 54 PNVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 54 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.....|+|.|++|+||||+|+.+.++.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998766
No 323
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.55 E-value=0.021 Score=54.40 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.|+|.|+.|+||||+|+.+...+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998774
No 324
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.54 E-value=0.022 Score=53.82 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..+|+|.|+.|+||||+|+.+.....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999987663
No 325
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.54 E-value=0.017 Score=54.09 Aligned_cols=25 Identities=16% Similarity=0.200 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
++|+|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999988764
No 326
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.54 E-value=0.031 Score=56.42 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
...+|.|.|++|+||||+|+.+..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998765
No 327
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.50 E-value=0.023 Score=53.09 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFE 79 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~ 79 (839)
...|+|+|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 328
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.49 E-value=0.022 Score=53.38 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..++++|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 447899999999999999999987653
No 329
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.48 E-value=0.026 Score=53.72 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=22.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
+..+|+|.|+.|+||||+|+.+....
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998764
No 330
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.47 E-value=0.027 Score=52.73 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
...|+|.|+.|+||||+|+.+.....
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999987663
No 331
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.46 E-value=0.024 Score=53.49 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+|+|.|+.|+||||+|+.+....
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 332
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.45 E-value=0.018 Score=54.07 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
++++|.|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999988764
No 333
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.43 E-value=0.023 Score=54.16 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+++|+|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 689999999999999999988754
No 334
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.43 E-value=0.023 Score=53.41 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLF 78 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~ 78 (839)
.+++|.|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 335
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.42 E-value=0.02 Score=52.88 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.+|+|.|+.|+||||+|+.+...+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988764
No 336
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.38 E-value=0.024 Score=53.82 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.+|+|.|++|+||||+|+.+.....
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999988764
No 337
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.38 E-value=0.026 Score=52.34 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
.++|+|+.|+|||||++.++....+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999988753
No 338
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.35 E-value=0.06 Score=67.68 Aligned_cols=83 Identities=17% Similarity=0.244 Sum_probs=53.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhc-----cCCCchHH-HHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLEL-----CKGTESER-ARTLFD 129 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~-~~~~~~ 129 (839)
.+.+.|+|++|+|||+||.+++.....+ =..+.|+++....+... ++.++.+. ......+. ...+.+
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~ 1499 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1499 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHH
Confidence 4689999999999999999998876533 33578887777665554 44444221 11222233 333333
Q ss_pred HHHcCCcEEEEEeCCC
Q 003203 130 RLWKENKILVILDDIC 145 (839)
Q Consensus 130 ~l~~~~~~LlVlDdv~ 145 (839)
...+.+.-+||+|.+.
T Consensus 1500 lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1500 LARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHTCCSEEEESCGG
T ss_pred HHhcCCCCEEEEcChh
Confidence 3344677899999985
No 339
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.33 E-value=0.022 Score=64.41 Aligned_cols=51 Identities=12% Similarity=0.008 Sum_probs=42.8
Q ss_pred cCCCCCccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 29 RSNQGYKSFESRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 29 ~~~~~~~~fvgR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.+|.....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++....
T Consensus 35 ~rp~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 35 VPEKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCSSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 34455678999999998888888766 5889999999999999999988654
No 340
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.32 E-value=0.3 Score=50.01 Aligned_cols=29 Identities=24% Similarity=0.278 Sum_probs=25.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
+..+++|+|+.|+||||+++.++...+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 35799999999999999999999887643
No 341
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.32 E-value=0.027 Score=54.05 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
.+|+|.|+.|+||||+|+.+...+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 58999999999999999999988764
No 342
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.30 E-value=0.025 Score=54.93 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.+|+|+|+.|+||||+|+.+...+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987653
No 343
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.26 E-value=0.03 Score=53.69 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
+..+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988664
No 344
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.25 E-value=0.17 Score=51.20 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=28.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEE
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLA 94 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 94 (839)
.++++|+|.+|+||||++..++...... -..+.++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~ 134 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAA 134 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecC
Confidence 4689999999999999999999887643 223555544
No 345
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.24 E-value=0.029 Score=52.90 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..+|+|.|+.|+||||+|+.+.....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999987653
No 346
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.23 E-value=0.032 Score=53.07 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..+|+|.|++|+||||+|+.+.....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34899999999999999999988763
No 347
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.22 E-value=0.027 Score=55.76 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=23.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 54 PNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 54 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
....+|+|.|+.|+||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456899999999999999999988654
No 348
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.22 E-value=0.029 Score=51.46 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.|+|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988764
No 349
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.20 E-value=0.15 Score=50.10 Aligned_cols=48 Identities=17% Similarity=0.349 Sum_probs=32.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEI 107 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 107 (839)
.++.|.|.+|+|||++|.+++.....+. -..++|++.. .+..++.+.+
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~-~~~v~~~s~E--~~~~~~~~~~ 78 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVTLE--ERARDLRREM 78 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEESS--SCHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCCceeeccc--CCHHHHHHHH
Confidence 5899999999999999999876543221 2345565443 3455555444
No 350
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.19 E-value=0.028 Score=53.65 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+++|+|+.|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999987655
No 351
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.17 E-value=0.024 Score=53.72 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
++++|+|+.|+|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999987653
No 352
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.17 E-value=0.03 Score=53.29 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHH
Q 003203 54 PNVNMIGVYGIGGVGKTALMHEVLFE 79 (839)
Q Consensus 54 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 79 (839)
++..+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999998764
No 353
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.16 E-value=0.033 Score=55.45 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=23.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
..+|.|.|++|+||||+|+.+...+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~ 30 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSK 30 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 368999999999999999999988653
No 354
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.09 E-value=0.031 Score=52.71 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
+|+|.|+.|+||||+|+.+...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999988753
No 355
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.09 E-value=0.031 Score=55.11 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=23.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..+|+|+|+.|+||||+++.++..+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999997763
No 356
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.02 E-value=0.017 Score=60.19 Aligned_cols=111 Identities=11% Similarity=0.056 Sum_probs=58.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCc
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENK 136 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (839)
.+++|+|+.|+||||+++.+....... ....+ +++.+..... .......+...............+...+. ..+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i-~t~ed~~e~~--~~~~~~~v~q~~~~~~~~~~~~~La~aL~-~~P 197 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHI-LTIEDPIEFV--HESKKCLVNQREVHRDTLGFSEALRSALR-EDP 197 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEE-EEEESSCCSC--CCCSSSEEEEEEBTTTBSCHHHHHHHHTT-SCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCC--CCcEE-EEccCcHHhh--hhccccceeeeeeccccCCHHHHHHHHhh-hCc
Confidence 599999999999999999998876543 12222 2232221110 00000000000000111112223444444 467
Q ss_pred EEEEEeCCCCccccccccccCCCCCCCceEEEEeCchhhh
Q 003203 137 ILVILDDICTSIDLVTVGIPFGNAHRGCKILLASRYRDIL 176 (839)
Q Consensus 137 ~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~~~ 176 (839)
=+|++|++-+.+.++.+... ...|..|++|+.+...+
T Consensus 198 dvillDEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 198 DIILVGEMRDLETIRLALTA---AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SEEEESCCCSHHHHHHHHHH---HHTTCEEEEEESCSSHH
T ss_pred CEEecCCCCCHHHHHHHHHH---HhcCCEEEEEEccChHH
Confidence 78899999876554443322 12466688888877654
No 357
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.01 E-value=0.036 Score=53.28 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=24.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
..+|+|.|+.|+||||+|+.+...+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999988764
No 358
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.00 E-value=0.023 Score=53.02 Aligned_cols=25 Identities=32% Similarity=0.296 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.+|.|.|+.|+||||+|+.+.....
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999987654
No 359
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.00 E-value=0.026 Score=52.02 Aligned_cols=21 Identities=19% Similarity=0.480 Sum_probs=18.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEV 76 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~ 76 (839)
..+++|+|+.|+|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 368999999999999999963
No 360
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.00 E-value=0.06 Score=49.45 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=24.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
.++++|.|+.|+|||||+..+......
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999988754
No 361
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.99 E-value=0.1 Score=56.82 Aligned_cols=43 Identities=14% Similarity=0.236 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 40 RKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 40 R~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
..+.++.+.+.+.+++ +.+.|.|.+|+||||++.+++..+...
T Consensus 30 Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 4445555555665544 489999999999999999999988754
No 362
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.98 E-value=0.035 Score=53.27 Aligned_cols=32 Identities=16% Similarity=0.109 Sum_probs=26.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCe
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQ 88 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~ 88 (839)
..+|+|.|+.|+||||+|+.+...+... +++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~-~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN-NVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 3589999999999999999999887643 3444
No 363
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.96 E-value=0.035 Score=53.66 Aligned_cols=25 Identities=16% Similarity=0.092 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..|+|.|++|+||||+|+.++..+.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999988763
No 364
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.96 E-value=0.029 Score=53.42 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLF 78 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~ 78 (839)
.+|+|.|+.|+||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999986
No 365
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.94 E-value=0.034 Score=52.19 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=22.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
...+|+|+|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999998753
No 366
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.94 E-value=0.021 Score=54.89 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
+|+|.|+.|+||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988763
No 367
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.93 E-value=0.034 Score=50.98 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
++++|+|..|+|||||++.+..-+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 589999999999999999998887654
No 368
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.92 E-value=0.034 Score=53.51 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.|+|.|++|+||||+|+.+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998766
No 369
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.92 E-value=0.042 Score=54.39 Aligned_cols=26 Identities=27% Similarity=0.161 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..+|.|.|++|+||||+|+.+.....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999987653
No 370
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.88 E-value=0.035 Score=53.07 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
..+|+|+|++|+||||+|+.+....
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999987543
No 371
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.87 E-value=0.036 Score=52.39 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
.|+|.|+.|+||||+|+.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988754
No 372
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.80 E-value=0.036 Score=59.05 Aligned_cols=47 Identities=19% Similarity=0.126 Sum_probs=36.7
Q ss_pred ccccchHHHHHHHHHHhcC--------------CCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 35 KSFESRKSILCDILDWLTS--------------PNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~~--------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..++|.++..+.+..++.. ...+-+.++|++|+||||+|+.++....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3578988888888766621 1235688999999999999999998774
No 373
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.79 E-value=0.073 Score=56.25 Aligned_cols=90 Identities=20% Similarity=0.237 Sum_probs=53.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHh-ccCC-eEEEEEEecC-CCHHHHHHHHHHH--hhh-----hccCCCchH----
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQ-NLFD-QVIFVLASST-ANVKRIQDEIADQ--LCL-----ELCKGTESE---- 122 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~f~-~~~wv~~~~~-~~~~~~~~~i~~~--l~~-----~~~~~~~~~---- 122 (839)
+.++|.|.+|+|||+|+.++++..... ++-+ .++++-+++. ..+.++.+++... +.. ...++....
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a 231 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIAT 231 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHH
Confidence 457899999999999999988775431 1111 5667777654 3455666665442 111 111122221
Q ss_pred --HHHHHHHHHH--cCCcEEEEEeCCCC
Q 003203 123 --RARTLFDRLW--KENKILVILDDICT 146 (839)
Q Consensus 123 --~~~~~~~~l~--~~~~~LlVlDdv~~ 146 (839)
....+-+++. .++.+|+++||+-.
T Consensus 232 ~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 232 PRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 1233445555 37999999999853
No 374
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.74 E-value=0.045 Score=55.83 Aligned_cols=29 Identities=28% Similarity=0.289 Sum_probs=24.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 54 PNVNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 54 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
....+|+|.|+.|+|||||++.+..-...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34579999999999999999999887653
No 375
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.74 E-value=0.035 Score=52.95 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLF 78 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~ 78 (839)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 376
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.71 E-value=0.064 Score=57.06 Aligned_cols=89 Identities=20% Similarity=0.241 Sum_probs=54.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcc--CCeEEEEEEecCC-CHHHHHHHHHHHhhhh-------ccCCCchH----
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNL--FDQVIFVLASSTA-NVKRIQDEIADQLCLE-------LCKGTESE---- 122 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 122 (839)
+.++|.|.+|+|||+|+.+++++....+. -+.++++-+++.. .+.++.+++...=... ..++....
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 56788999999999999999987653211 1356777676543 4566666665431111 11111111
Q ss_pred --HHHHHHHHHH--cCCcEEEEEeCCC
Q 003203 123 --RARTLFDRLW--KENKILVILDDIC 145 (839)
Q Consensus 123 --~~~~~~~~l~--~~~~~LlVlDdv~ 145 (839)
....+-+++. +++.+|+++||+-
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 2233444444 4899999999974
No 377
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.69 E-value=0.035 Score=53.74 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..|+|.|++|+||||+|+.++..+.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999988764
No 378
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.68 E-value=0.036 Score=52.92 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+++|+|+.|+|||||++.+..-.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999988765
No 379
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.67 E-value=0.033 Score=54.11 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
..|+|.|++|+||||+|+.+....
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999998765
No 380
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.65 E-value=0.036 Score=54.81 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..+|+|.|+.|+||||+++.+...+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999987764
No 381
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.65 E-value=0.045 Score=51.13 Aligned_cols=105 Identities=10% Similarity=0.040 Sum_probs=69.4
Q ss_pred CCCccEEeecCCCCCCCC----ChhhhcCCCCccEEEeCCCccc-----ccCccccCCCCCcEEEccCCCcCCC------
Q 003203 405 YPQLDFFCMNSKDPFFKM----PENFFTGMSKLRGLALSEMQLL-----SLPPSVHLLSNLQTLCLDQCVVGDI------ 469 (839)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~------ 469 (839)
-+.|+.|++++++.+..- -...+..-+.|+.|+|++|.+. .+...+..-+.|++|+|++|.|..-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 356778888765322211 1123455678999999999887 3445566678899999999988762
Q ss_pred cccCCCCCCCEEEccCCCC---C-----CCchhhcCCCccCeEecCCC
Q 003203 470 SIIGNLKKLEILSLVDSDI---E-----RLPNEIGQLTQLRCLDLSFC 509 (839)
Q Consensus 470 ~~~~~l~~L~~L~l~~~~l---~-----~lp~~i~~l~~L~~L~l~~~ 509 (839)
..+..-..|++|+|+++.. . .+...+..-+.|++|+++.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 4556667799999987633 2 12334455566777777654
No 382
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.64 E-value=0.045 Score=55.53 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=24.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
+..+++|+|++|+||||+++.++.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3469999999999999999999987764
No 383
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.61 E-value=0.39 Score=52.04 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=35.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIA 108 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 108 (839)
.++.|.|.+|+||||+|.+++....... -..++|++.. .+..++...+.
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E--~s~~~l~~r~~ 252 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLE--MSAQQLVMRML 252 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESS--SCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECC--CCHHHHHHHHH
Confidence 5899999999999999999998876532 1246676543 34555555554
No 384
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.61 E-value=0.048 Score=53.68 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
..+|+|.|+.|+|||||++.+....
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 385
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.60 E-value=0.048 Score=49.25 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.-.+++|.|+.|.|||||++.++.-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34699999999999999999998876
No 386
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.60 E-value=0.072 Score=50.99 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=24.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 54 PNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 54 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
....+|+|.|+.|+||||+|+.+...+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3347899999999999999999998876
No 387
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.59 E-value=0.037 Score=53.29 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.|+|.|++|+||||+|+.+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998665
No 388
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.58 E-value=0.041 Score=52.89 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
-.+++|+|+.|+|||||++.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46999999999999999999987654
No 389
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.58 E-value=0.45 Score=50.42 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=28.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEE
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLA 94 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 94 (839)
.++++|+|++|+||||++..++.....+ -..+..+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~ 134 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAA 134 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeec
Confidence 5689999999999999999999888643 223444444
No 390
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.57 E-value=0.099 Score=53.45 Aligned_cols=44 Identities=18% Similarity=0.316 Sum_probs=33.0
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC
Q 003203 53 SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA 98 (839)
Q Consensus 53 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 98 (839)
....++|+|+|-||+||||+|..++..+..++ ..+.-+......
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D~~~ 81 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDPKH 81 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESSSC
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEeCCCCC
Confidence 44568899999999999999999999887542 256677766433
No 391
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.56 E-value=0.12 Score=44.80 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=24.6
Q ss_pred EEEeCCCccc--ccCccccCCCCCcEEEccCCCcCCC--cccCCCCCCCEEEccCCC
Q 003203 435 GLALSEMQLL--SLPPSVHLLSNLQTLCLDQCVVGDI--SIIGNLKKLEILSLVDSD 487 (839)
Q Consensus 435 ~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~ 487 (839)
+++.++++++ .+|..+. .+|++|+|++|.+..+ ..|..+++|++|+|.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5556666655 5554321 2344555555544442 234444455555555443
No 392
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.55 E-value=0.035 Score=53.55 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+++|+|+.|+|||||++.+....
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998754
No 393
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.51 E-value=0.34 Score=52.26 Aligned_cols=51 Identities=12% Similarity=-0.020 Sum_probs=36.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQ 110 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 110 (839)
.++.|.|.+|+||||+|.+++.....+. -..++|++.. .+..++...+...
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHHH
Confidence 5899999999999999999998876432 1246676554 4556666665543
No 394
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.51 E-value=0.11 Score=54.14 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=30.2
Q ss_pred HHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 44 LCDILDWLT--SPNVNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 44 ~~~l~~~l~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
..++.+.+. ..+..+|+|+|.+|+||||++.++......
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 344455544 456789999999999999999999888754
No 395
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.49 E-value=0.077 Score=56.05 Aligned_cols=90 Identities=18% Similarity=0.231 Sum_probs=53.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHh--------ccCC-eEEEEEEecC-CCHHHHHHHHHHH--hhh-----hccCCC
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQ--------NLFD-QVIFVLASST-ANVKRIQDEIADQ--LCL-----ELCKGT 119 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~--------~~f~-~~~wv~~~~~-~~~~~~~~~i~~~--l~~-----~~~~~~ 119 (839)
+.++|.|.+|+|||+|+.++++..... ++-+ .++++-+++. ..+.++.+++... +.. ...++.
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 467899999999999999988775431 1122 4667777654 3455666655432 110 111122
Q ss_pred chH------HHHHHHHHHH--cCCcEEEEEeCCCC
Q 003203 120 ESE------RARTLFDRLW--KENKILVILDDICT 146 (839)
Q Consensus 120 ~~~------~~~~~~~~l~--~~~~~LlVlDdv~~ 146 (839)
... ....+-+++. +++.+|+++||+-.
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 222 2233445555 37999999999853
No 396
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.45 E-value=0.051 Score=50.45 Aligned_cols=27 Identities=19% Similarity=0.107 Sum_probs=23.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
..+|+|.|+.|+||||+++.+...+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 368899999999999999999887754
No 397
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.44 E-value=0.043 Score=51.32 Aligned_cols=25 Identities=36% Similarity=0.401 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.+++|+|+.|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998876
No 398
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.42 E-value=0.044 Score=56.02 Aligned_cols=25 Identities=32% Similarity=0.264 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.+|+|.|+.|+||||||..++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999987653
No 399
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.40 E-value=0.049 Score=52.63 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.+|+|.|++|+||||+|+.+...+.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999987764
No 400
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.27 E-value=0.043 Score=53.88 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.+|+|+|+.|+||||+++.+.....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999999999999999998764
No 401
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.19 E-value=0.054 Score=52.41 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.|+|.|+.|+||||+|+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998776
No 402
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.15 E-value=0.26 Score=52.87 Aligned_cols=100 Identities=14% Similarity=0.194 Sum_probs=55.1
Q ss_pred HHHHhc-CCCeeEEEEEcCCCCcHHHHH-HHHHHHHHH----hccCC-eEEEEEEecCC-CHHHHHHHHHHHhhhh----
Q 003203 47 ILDWLT-SPNVNMIGVYGIGGVGKTALM-HEVLFEAKK----QNLFD-QVIFVLASSTA-NVKRIQDEIADQLCLE---- 114 (839)
Q Consensus 47 l~~~l~-~~~~~~v~I~G~~GiGKTtLa-~~~~~~~~~----~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~---- 114 (839)
.++.+. =.+-+.++|+|.+|+|||+|| ..+.+.... .++-+ .++++-+++.. .+.++.+++...=...
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvv 231 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceE
Confidence 344444 223357789999999999995 456665542 11234 36677776543 4556666655421111
Q ss_pred ---ccCCCchHH------HHHHHHHHH-cCCcEEEEEeCCCC
Q 003203 115 ---LCKGTESER------ARTLFDRLW-KENKILVILDDICT 146 (839)
Q Consensus 115 ---~~~~~~~~~------~~~~~~~l~-~~~~~LlVlDdv~~ 146 (839)
...+..... ...+-+++. +++.+||++||+-.
T Consensus 232 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 232 VSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 111111111 223333343 47999999999854
No 403
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.12 E-value=0.054 Score=52.13 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..|+|.|++|+||||+|+.+...+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988763
No 404
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.12 E-value=0.056 Score=51.53 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
+|+|.|+.|+||||+|+.+.....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999987664
No 405
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.11 E-value=0.051 Score=51.71 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+|+|.|+.|+||||+|+.+...+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998765
No 406
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.08 E-value=0.056 Score=51.91 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998866
No 407
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.02 E-value=0.2 Score=65.43 Aligned_cols=138 Identities=12% Similarity=0.056 Sum_probs=75.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhccCCCchHHHHHHHHHHHcCCc
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELCKGTESERARTLFDRLWKENK 136 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (839)
+-|.++|++|+|||++|+.+..... .+ ..+.++.+...+...+++.+...+..........- .--..+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~---~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~------~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS---LY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTL------LPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS---SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEE------EEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC---CC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccc------cCCCCCce
Confidence 5677999999999999988765431 12 35667788777777776666554432110000000 00003578
Q ss_pred EEEEEeCCCCc--c------ccccccccC------CCCC------CCceEEEEeCchh------hhhhhcCccceEEccC
Q 003203 137 ILVILDDICTS--I------DLVTVGIPF------GNAH------RGCKILLASRYRD------ILVSEMHSQYNYCVSV 190 (839)
Q Consensus 137 ~LlVlDdv~~~--~------~~~~l~~~l------~~~~------~~s~iivTtr~~~------~~~~~~~~~~~~~l~~ 190 (839)
.++++||++-. + ..+.++..+ .... .+..+|.++.... +..........+.++.
T Consensus 1338 ~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~ 1417 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGY 1417 (2695)
T ss_dssp EEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCC
T ss_pred EEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCC
Confidence 89999997532 1 111111111 1011 1233444443331 1111123346788999
Q ss_pred CCHHHHHHHHHHHh
Q 003203 191 LNKEEAWSLFKKMV 204 (839)
Q Consensus 191 L~~~ea~~Lf~~~~ 204 (839)
.+.++-..+|....
T Consensus 1418 P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1418 PSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99988888888776
No 408
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.98 E-value=0.069 Score=54.16 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=24.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
..+++|+|+.|+||||+++.++...+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 369999999999999999999988764
No 409
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.96 E-value=0.052 Score=54.46 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.++|+|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998654
No 410
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.96 E-value=0.059 Score=54.19 Aligned_cols=23 Identities=26% Similarity=0.625 Sum_probs=20.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVL 77 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~ 77 (839)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999987
No 411
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.92 E-value=0.17 Score=51.38 Aligned_cols=49 Identities=14% Similarity=0.231 Sum_probs=33.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIA 108 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 108 (839)
.+++|.|++|+|||||+..++........ ..++|+... ....++...+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G-~~v~~~~~e--~~~~~~~~r~~ 84 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMG-KKVGLAMLE--ESVEETAEDLI 84 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSC-CCEEEEESS--SCHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcC-CeEEEEeCc--CCHHHHHHHHH
Confidence 68999999999999999999988764311 135565443 23444444433
No 412
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.92 E-value=0.32 Score=52.28 Aligned_cols=49 Identities=16% Similarity=0.048 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIAD 109 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 109 (839)
.++.|.|.+|+||||+|.+++.....+ -..++|++... +..++...+..
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHH
Confidence 589999999999999999999887654 23566765543 34444444443
No 413
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.92 E-value=0.061 Score=54.57 Aligned_cols=24 Identities=25% Similarity=0.157 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
++|+|+|+.|+||||||..++.+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998765
No 414
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.88 E-value=0.038 Score=55.81 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=20.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
+..+|+|.|+.|+||||+|+.+...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999988664
No 415
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.84 E-value=0.16 Score=48.42 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=27.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEec
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASS 96 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 96 (839)
.|.+.|.||+||||+|..++.....++ + .+..+.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G-~-~V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG-V-RVMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT-C-CEEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC-C-CEEEEEeCC
Confidence 478899999999999999999887542 3 344555544
No 416
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.83 E-value=0.069 Score=51.42 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLF 78 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~ 78 (839)
.+|+|.|+.|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999865
No 417
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.81 E-value=0.065 Score=52.25 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..|+|.|+.|+||||+|+.+...+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999998764
No 418
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=92.80 E-value=0.22 Score=53.89 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=39.0
Q ss_pred HHHHhc-CCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC-CCHHHHHHHH
Q 003203 47 ILDWLT-SPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST-ANVKRIQDEI 107 (839)
Q Consensus 47 l~~~l~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i 107 (839)
+++.+. =.+-+.++|.|..|+|||+|+.++++.. +-+.++++-+++. ..+.++++++
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 445554 2233688999999999999999987753 2356788888765 3445555443
No 419
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.73 E-value=0.13 Score=52.60 Aligned_cols=28 Identities=18% Similarity=0.108 Sum_probs=24.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 54 PNVNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 54 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.+..+|+|.|+.|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999887654
No 420
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.69 E-value=0.21 Score=62.13 Aligned_cols=84 Identities=20% Similarity=0.319 Sum_probs=51.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhcc-----CCCchHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELC-----KGTESERARTLFDRL 131 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~l 131 (839)
.++.|.|++|+||||||.+++...... -..++|++........ . ++.++.... .....+.+....+++
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~aa~~--g~~VlyiS~Ees~~ql--~---A~~lGvd~~~L~i~~~~~leei~~~l~~l 805 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI--Y---ARKLGVDIDNLLCSQPDTGEQALEICDAL 805 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH--H---HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCcHHHHHHHHHHHHHc--CCCeEEEeccchHHHH--H---HHHcCCChhheEEecCCcHHHHHHHHHHH
Confidence 589999999999999999999887643 2357777666555432 1 444543211 122223332333322
Q ss_pred -HcCCcEEEEEeCCCCc
Q 003203 132 -WKENKILVILDDICTS 147 (839)
Q Consensus 132 -~~~~~~LlVlDdv~~~ 147 (839)
...+.-+||+|.+...
T Consensus 806 v~~~~~~lVVIDsLq~l 822 (1706)
T 3cmw_A 806 ARSGAVDVIVVDSVAAL 822 (1706)
T ss_dssp HHHTCCSEEEESCSTTC
T ss_pred HHccCCCEEEEechhhh
Confidence 2346679999998643
No 421
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.63 E-value=0.064 Score=52.34 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+++|+|+.|+|||||++.++.-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 789999999999999999987543
No 422
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.61 E-value=0.042 Score=53.59 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=16.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-HHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVL-FEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~-~~~ 80 (839)
.+++|+|+.|+|||||++.+. ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 689999999999999999998 654
No 423
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.57 E-value=0.12 Score=49.97 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=24.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
...+|+|.|+.|+||||+++.+...+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999999998864
No 424
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.56 E-value=0.088 Score=52.76 Aligned_cols=25 Identities=32% Similarity=0.174 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.++|+|.|+.|+||||||..++...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 425
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.49 E-value=0.099 Score=53.45 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=28.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEE
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLA 94 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 94 (839)
.++++|+|++|+||||++..++...... -..+.++..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~ 141 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAA 141 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeC
Confidence 4699999999999999999999887653 223555543
No 426
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.43 E-value=0.11 Score=51.69 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=23.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
..++++.|.||+||||++.+++....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 56889999999999999999998876
No 427
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.41 E-value=0.055 Score=55.10 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.++|+|+|+.|+||||||..++.++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3689999999999999999998654
No 428
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=92.41 E-value=0.21 Score=53.88 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=39.0
Q ss_pred HHHHhcC-CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC-CHHHHHHHH
Q 003203 47 ILDWLTS-PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA-NVKRIQDEI 107 (839)
Q Consensus 47 l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i 107 (839)
+++.+.. .+-+.++|.|..|+|||+|+.++++.. +-+.++++-+++.. .+.++++++
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4455541 223578999999999999999986642 23567788777664 355666554
No 429
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.39 E-value=0.15 Score=52.70 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=34.6
Q ss_pred HhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC
Q 003203 50 WLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA 98 (839)
Q Consensus 50 ~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 98 (839)
.+.+...+++.+.|.||+||||+|..++........-..+.-++.....
T Consensus 12 ~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~ 60 (348)
T 3io3_A 12 IVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAH 60 (348)
T ss_dssp HHTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSC
T ss_pred HhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCC
Confidence 3445566899999999999999999999888721112346666665433
No 430
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.36 E-value=0.074 Score=50.58 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFE 79 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~ 79 (839)
.+++|+|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998876
No 431
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.36 E-value=0.17 Score=54.44 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=24.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
..+++|+|+.|+||||+++.++..++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 469999999999999999999987764
No 432
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.35 E-value=0.21 Score=47.77 Aligned_cols=30 Identities=30% Similarity=0.342 Sum_probs=25.9
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 53 SPNVNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 53 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
......|+|.|+.|+||||+++.+.+.+..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 444578999999999999999999998875
No 433
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.28 E-value=0.15 Score=50.40 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=24.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
.-.+++|+|+.|+||||+++.+......
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 3469999999999999999999887653
No 434
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.25 E-value=0.095 Score=54.32 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=24.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
..+++|+|+.|+||||+++.++.....
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 469999999999999999999988764
No 435
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.19 E-value=0.067 Score=52.08 Aligned_cols=33 Identities=15% Similarity=0.400 Sum_probs=24.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEE
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFV 92 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv 92 (839)
.+++|+|+.|+|||||++.+..-.+ ...+.+++
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~ 64 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYI 64 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEE
Confidence 6899999999999999998864332 23345554
No 436
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.19 E-value=0.33 Score=60.37 Aligned_cols=84 Identities=17% Similarity=0.219 Sum_probs=59.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhcc------CCCchHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELC------KGTESERARTLFD 129 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~~~ 129 (839)
-++|-|+|+.|+||||||.++......+ =...+|+.+.+..++.- ++.+|.+.+ +....+.+..+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 4799999999999999999999776543 45688888877776653 666666543 2233344444444
Q ss_pred HHHcCCcEEEEEeCCCC
Q 003203 130 RLWKENKILVILDDICT 146 (839)
Q Consensus 130 ~l~~~~~~LlVlDdv~~ 146 (839)
.+..+..-+||+|-|..
T Consensus 1504 ~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHHTCCSEEEESCSTT
T ss_pred HHHcCCCCEEEEccHHh
Confidence 45556777999999854
No 437
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.14 E-value=0.16 Score=52.28 Aligned_cols=47 Identities=26% Similarity=0.294 Sum_probs=35.1
Q ss_pred HhcCCCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCC
Q 003203 50 WLTSPNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTA 98 (839)
Q Consensus 50 ~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 98 (839)
.+.+...+++.+.|.||+||||+|..++...... -..+.-++.....
T Consensus 10 ~l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~--g~~vllid~D~~~ 56 (334)
T 3iqw_A 10 ILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKV--RRSVLLLSTDPAH 56 (334)
T ss_dssp HHHCTTCCEEEEECSTTSSHHHHHHHHHHHHTTS--SSCEEEEECCSSC
T ss_pred HhcCCCeEEEEEeCCCCccHHHHHHHHHHHHHhC--CCcEEEEECCCCC
Confidence 3445556889999999999999999999888744 2356667666444
No 438
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.12 E-value=0.064 Score=51.82 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFE 79 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~ 79 (839)
.+++|+|+.|+|||||++.++.-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988643
No 439
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.07 E-value=0.15 Score=55.49 Aligned_cols=45 Identities=11% Similarity=-0.127 Sum_probs=33.5
Q ss_pred cchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 38 ESRKSILCDILDWLT--SPNVNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 38 vgR~~~~~~l~~~l~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
..|.+..+.+.+... ..+..+|.+.|++|+||||+|+.+..++..
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 345555566666552 224468999999999999999999999863
No 440
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.06 E-value=0.061 Score=49.90 Aligned_cols=24 Identities=25% Similarity=0.273 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
+.|.|.|+.|+||||||.+++.+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999998654
No 441
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.99 E-value=0.14 Score=54.71 Aligned_cols=86 Identities=19% Similarity=0.198 Sum_probs=49.9
Q ss_pred eEEEEEcCCCCcHHHHHH-HHHHHHHHhccCCe-EEEEEEecCC-CHHHHHHHHHHHhhhh-------ccCCCchH----
Q 003203 57 NMIGVYGIGGVGKTALMH-EVLFEAKKQNLFDQ-VIFVLASSTA-NVKRIQDEIADQLCLE-------LCKGTESE---- 122 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~-~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 122 (839)
+.++|+|.+|+|||+||. .+++.. .-+. ++++-+++.. .+.++.+++...=... ..++....
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 577899999999999965 555543 2443 4667666543 4556666655421111 11111111
Q ss_pred --HHHHHHHHHH-cCCcEEEEEeCCCC
Q 003203 123 --RARTLFDRLW-KENKILVILDDICT 146 (839)
Q Consensus 123 --~~~~~~~~l~-~~~~~LlVlDdv~~ 146 (839)
....+-+++. +++.+||++||+-.
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 1223333443 47999999999854
No 442
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.99 E-value=0.091 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFE 79 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~ 79 (839)
.+|.|.|++|+||||+|+.+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 443
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.83 E-value=0.12 Score=47.96 Aligned_cols=27 Identities=19% Similarity=0.012 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
.++.|+|+.|+||||+|.+++++...+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~ 30 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG 30 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 578899999999999998888777543
No 444
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.81 E-value=0.075 Score=51.83 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+++|+|+.|+|||||++.++.-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999987544
No 445
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.76 E-value=0.1 Score=54.38 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
++|+|.|+.|+||||||..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999987764
No 446
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.76 E-value=0.095 Score=49.19 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.-.|+|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999987653
No 447
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.71 E-value=0.15 Score=54.62 Aligned_cols=96 Identities=16% Similarity=0.176 Sum_probs=53.3
Q ss_pred HHHHhc-CCCeeEEEEEcCCCCcHHHHHH-HHHHHHHHhccCCe-EEEEEEecCC-CHHHHHHHHHHHhhhh-------c
Q 003203 47 ILDWLT-SPNVNMIGVYGIGGVGKTALMH-EVLFEAKKQNLFDQ-VIFVLASSTA-NVKRIQDEIADQLCLE-------L 115 (839)
Q Consensus 47 l~~~l~-~~~~~~v~I~G~~GiGKTtLa~-~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~ 115 (839)
.++.+. =.+-+.++|+|.+|+|||+||. .+++.. .-+. ++++-+++.. .+.++.+++...=... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~at 227 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTAS 227 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEEC
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEEC
Confidence 344444 1233577899999999999965 555543 2443 4666666543 4555555555421111 1
Q ss_pred cCCCchHH------HHHHHHHHH-cCCcEEEEEeCCCC
Q 003203 116 CKGTESER------ARTLFDRLW-KENKILVILDDICT 146 (839)
Q Consensus 116 ~~~~~~~~------~~~~~~~l~-~~~~~LlVlDdv~~ 146 (839)
..+..... ...+-+++. +++.+||++||+-.
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 228 ASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 11111111 123333343 47999999999854
No 448
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.69 E-value=0.12 Score=50.48 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=22.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
...+|+|.|+.|+||||+++.+...+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998765
No 449
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.69 E-value=0.18 Score=49.45 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=27.5
Q ss_pred HHHHHHhcC--CCeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 45 CDILDWLTS--PNVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 45 ~~l~~~l~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.-+..|+.. ++...+.++|++|+|||.+|..+++..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 445566653 334579999999999999999998754
No 450
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.68 E-value=0.078 Score=52.87 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFE 79 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~ 79 (839)
.+++|+|+.|+|||||++.+..-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999988653
No 451
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.68 E-value=0.1 Score=49.51 Aligned_cols=36 Identities=22% Similarity=0.145 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHH
Q 003203 44 LCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFE 79 (839)
Q Consensus 44 ~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 79 (839)
.+.+.+.....+.-.|+|+|.+|+|||||+..+.+.
T Consensus 18 ~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 18 GSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred hhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 333434444444457789999999999999888754
No 452
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.66 E-value=0.28 Score=61.84 Aligned_cols=83 Identities=20% Similarity=0.323 Sum_probs=53.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHHhhhhcc-----CCCchHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQLCLELC-----KGTESERARTLFDRL 131 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~l 131 (839)
+++.|.|++|+||||||.+++...... -..++|++.....+... ++.++.+.. .....+.+....+.+
T Consensus 384 ~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~l 456 (2050)
T 3cmu_A 384 RIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHHH
Confidence 699999999999999999999887643 23578887776665432 445554321 122233333333333
Q ss_pred H-cCCcEEEEEeCCCC
Q 003203 132 W-KENKILVILDDICT 146 (839)
Q Consensus 132 ~-~~~~~LlVlDdv~~ 146 (839)
. ..+.-+||+|.+..
T Consensus 457 v~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 457 ARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHTCCSEEEESCGGG
T ss_pred HHhcCCcEEEECCHHH
Confidence 2 34566999998853
No 453
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.61 E-value=0.095 Score=51.59 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFE 79 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~ 79 (839)
.+++|+|+.|+|||||++.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998763
No 454
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.59 E-value=0.08 Score=52.50 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+++|+|+.|+|||||++.++.-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999886543
No 455
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.55 E-value=0.66 Score=51.01 Aligned_cols=51 Identities=10% Similarity=0.113 Sum_probs=36.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecCCCHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASSTANVKRIQDEIADQ 110 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 110 (839)
.++.|.|.+|+||||+|.+++.....+. -..++|++.. .+..++...++..
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E--~s~~~l~~r~~~~ 293 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLE--ESVEETAEDLIGL 293 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESS--SCHHHHHHHHHHH
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEecc--CCHHHHHHHHHHH
Confidence 5899999999999999999998876431 1246676553 3466666665443
No 456
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.54 E-value=0.29 Score=46.54 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=24.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
..|+|.|+.|+||||+++.+...+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999998764
No 457
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.54 E-value=0.082 Score=52.52 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+++|+|+.|+|||||++.+..-.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 689999999999999999987543
No 458
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.50 E-value=0.071 Score=50.92 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+++|+|+.|+|||||++.++.-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999986543
No 459
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.50 E-value=0.11 Score=52.42 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34689999999999999999998765
No 460
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.50 E-value=0.28 Score=47.47 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=26.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCC
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFD 87 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~ 87 (839)
..+|+|.|+.|+||||+++.+...+... .+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~ 57 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GID 57 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCC
Confidence 3689999999999999999999988754 344
No 461
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.48 E-value=0.076 Score=56.79 Aligned_cols=27 Identities=33% Similarity=0.612 Sum_probs=23.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 54 PNVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 54 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
....+|.|+|++|+||||+|+.++.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 446799999999999999999987654
No 462
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.47 E-value=0.085 Score=51.56 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+++|+|+.|+|||||++.++.-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999887543
No 463
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.45 E-value=0.23 Score=49.46 Aligned_cols=39 Identities=18% Similarity=0.370 Sum_probs=30.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST 97 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 97 (839)
++|+|.|-||+||||+|..++..+..+ -..+.-++....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~--G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM--GKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC--CCcEEEEcCCCC
Confidence 578889999999999999999988744 235666766543
No 464
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.44 E-value=0.12 Score=46.56 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFE 79 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~ 79 (839)
+.|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 465
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.42 E-value=0.087 Score=51.07 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+++|+|+.|+|||||++.++.-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999987654
No 466
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.41 E-value=0.086 Score=52.19 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+++|+|+.|+|||||++.++.-.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 689999999999999999886543
No 467
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.39 E-value=0.31 Score=46.38 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=24.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
..|+|.|+.|+||||+++.+...+...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999988753
No 468
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.39 E-value=0.12 Score=52.08 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.++.|+|++|+||||||.+++....
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 6899999999999999999988655
No 469
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.37 E-value=0.093 Score=51.40 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFE 79 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~ 79 (839)
.+++|+|+.|+|||||++.++.-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998654
No 470
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.37 E-value=0.1 Score=51.87 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFE 79 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~ 79 (839)
.+++|+|+.|+|||||++.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998764
No 471
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.35 E-value=0.089 Score=51.63 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+++|+|+.|+|||||++.++.-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999986543
No 472
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.34 E-value=0.089 Score=52.05 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+++|+|+.|+|||||++.++.-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999986543
No 473
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.33 E-value=0.21 Score=46.74 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=21.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFE 79 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~ 79 (839)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998764
No 474
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.33 E-value=0.18 Score=55.53 Aligned_cols=45 Identities=16% Similarity=0.162 Sum_probs=31.2
Q ss_pred cchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 38 ESRKSILCDILDWLT--SPNVNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 38 vgR~~~~~~l~~~l~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
+.+.+..+.+..... -.+..+++|+|+.|+|||||++.++.....
T Consensus 349 f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 349 YSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp TSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 344444444444331 123478999999999999999999988763
No 475
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.28 E-value=0.11 Score=49.14 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFE 79 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~ 79 (839)
-.|+|+|..|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998865
No 476
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.27 E-value=0.13 Score=46.72 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLF 78 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~ 78 (839)
..|+|+|.+|+|||||.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999875
No 477
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.27 E-value=0.22 Score=52.04 Aligned_cols=27 Identities=26% Similarity=0.153 Sum_probs=23.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 54 PNVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 54 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
...++++|+|+.|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 344699999999999999999998754
No 478
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.27 E-value=0.089 Score=56.23 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=28.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEE
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLA 94 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 94 (839)
.++|+|+|.+|+||||+|..++.....++ + .+..++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G-~-kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRG-L-KPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHH-C-CEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC-C-eEEEEec
Confidence 46899999999999999999998876542 2 3444443
No 479
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.16 E-value=0.14 Score=50.24 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 56 VNMIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 56 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
...|+|.|..|+||||+++.+...+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999988764
No 480
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.15 E-value=0.28 Score=49.54 Aligned_cols=39 Identities=21% Similarity=0.447 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST 97 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 97 (839)
++|+|.|-||+||||+|..++..+..++ ..+..++....
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G--~rVlliD~D~q 41 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMG--KKVMIVGCDPK 41 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTT--CCEEEEEECSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCC--CeEEEEecCCC
Confidence 6788899999999999999999887542 24666666543
No 481
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.14 E-value=0.095 Score=51.66 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFE 79 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~ 79 (839)
.+++|+|+.|+|||||++.++.-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998654
No 482
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.11 E-value=0.096 Score=51.84 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFE 79 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~ 79 (839)
.+++|+|+.|+|||||++.++.-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 68999999999999999998754
No 483
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=91.09 E-value=0.77 Score=44.59 Aligned_cols=39 Identities=21% Similarity=0.139 Sum_probs=27.4
Q ss_pred chHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 39 SRKSILCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 39 gR~~~~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
=|....+.+..++... -+.|+|+.|.|||.+|..++...
T Consensus 94 l~~~Q~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 94 LRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 3455555555555433 27789999999999999887654
No 484
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=91.05 E-value=0.86 Score=48.64 Aligned_cols=86 Identities=16% Similarity=0.225 Sum_probs=49.2
Q ss_pred eEEEEEcCCCCcHHHHHH-HHHHHHHHhccCCe-EEEEEEecCC-CHHHHHHHHHHHhhhh-------ccCCCchHH---
Q 003203 57 NMIGVYGIGGVGKTALMH-EVLFEAKKQNLFDQ-VIFVLASSTA-NVKRIQDEIADQLCLE-------LCKGTESER--- 123 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~-~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 123 (839)
+.++|.|..|+|||+||. .+.+. .+-+. ++++-+++.. .+.++.+++...=... ...+.....
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a 238 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLA 238 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHH
Confidence 577899999999999974 55543 22343 5777777653 4556666554321110 011111111
Q ss_pred ---HHHHHHHHH-cCCcEEEEEeCCCC
Q 003203 124 ---ARTLFDRLW-KENKILVILDDICT 146 (839)
Q Consensus 124 ---~~~~~~~l~-~~~~~LlVlDdv~~ 146 (839)
...+-+++. +++.+||++||+-.
T Consensus 239 ~~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 239 PYAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 122233332 47999999999854
No 485
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.00 E-value=0.1 Score=51.25 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+++|+|+.|+|||||++.++.-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 589999999999999999987543
No 486
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.98 E-value=0.1 Score=52.06 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+++|+|+.|+|||||++.++.-.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999986543
No 487
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.84 E-value=0.11 Score=51.28 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+++|+|+.|+|||||++.++.-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999987543
No 488
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.77 E-value=0.11 Score=51.71 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFE 79 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~ 79 (839)
.+++|+|+.|+|||||++.++.-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998654
No 489
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.73 E-value=0.12 Score=48.13 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLF 78 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~ 78 (839)
-|+|+|.+|+|||||++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999876
No 490
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.71 E-value=0.15 Score=48.89 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.++|.|++|+||||+|+.+...+.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ceeeECCCCCCHHHHHHHHHHHhC
Confidence 579999999999999999988774
No 491
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.70 E-value=0.11 Score=51.98 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 57 NMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 57 ~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
.+++|+|+.|+|||||++.++.-.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 589999999999999999887543
No 492
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.66 E-value=0.13 Score=52.85 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
+.++++|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46899999999999999999988653
No 493
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.62 E-value=0.14 Score=51.00 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAK 81 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~ 81 (839)
.++|+|+.|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999987653
No 494
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.51 E-value=0.14 Score=46.29 Aligned_cols=22 Identities=41% Similarity=0.641 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 003203 58 MIGVYGIGGVGKTALMHEVLFE 79 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~ 79 (839)
.|+++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998765
No 495
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.51 E-value=0.46 Score=44.58 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHh
Q 003203 58 MIGVYGIGGVGKTALMHEVLFEAKKQ 83 (839)
Q Consensus 58 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 83 (839)
.|+|-|.-|+||||.++.+++.++.+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~ 27 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 47889999999999999999998865
No 496
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.44 E-value=0.08 Score=59.42 Aligned_cols=46 Identities=15% Similarity=0.010 Sum_probs=33.8
Q ss_pred ccccchHHHHHHHHHHhcCCCee-----------EEEEEcCCCCcHHHHHHHHHHHH
Q 003203 35 KSFESRKSILCDILDWLTSPNVN-----------MIGVYGIGGVGKTALMHEVLFEA 80 (839)
Q Consensus 35 ~~fvgR~~~~~~l~~~l~~~~~~-----------~v~I~G~~GiGKTtLa~~~~~~~ 80 (839)
..++|.+...+.+.-.+..+..+ -|.++|++|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 45889888766665555444211 58899999999999999987654
No 497
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.42 E-value=0.23 Score=50.44 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHH
Q 003203 44 LCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVL 77 (839)
Q Consensus 44 ~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~ 77 (839)
++++.+.+. -.+++|+|+.|+|||||++.+.
T Consensus 156 i~~L~~~l~---G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE---GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT---TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc---CcEEEEECCCCCCHHHHHHHHH
Confidence 444555543 2588999999999999999988
No 498
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=90.41 E-value=0.18 Score=54.36 Aligned_cols=56 Identities=21% Similarity=0.202 Sum_probs=37.7
Q ss_pred HHHHhcC-CCeeEEEEEcCCCCcHHHHHHHHHHHHHHhccCCeEEEEEEecC-CCHHHHHHH
Q 003203 47 ILDWLTS-PNVNMIGVYGIGGVGKTALMHEVLFEAKKQNLFDQVIFVLASST-ANVKRIQDE 106 (839)
Q Consensus 47 l~~~l~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~ 106 (839)
+++.+.. .+-+.++|.|..|+|||+|+.++++... -+.++++-+++. ..+.+++++
T Consensus 211 vID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~ 268 (578)
T 3gqb_A 211 ILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWSN----ADVVVYVGSGERGNEMTDVLVE 268 (578)
T ss_dssp HHHTTSCEETTCEEEECCCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHTT
T ss_pred hhhhcccccCCCEEeeeCCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHH
Confidence 4445441 2235789999999999999999876632 356788888765 334444444
No 499
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.40 E-value=0.27 Score=45.73 Aligned_cols=35 Identities=14% Similarity=0.276 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHH
Q 003203 44 LCDILDWLTSPNVNMIGVYGIGGVGKTALMHEVLFE 79 (839)
Q Consensus 44 ~~~l~~~l~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 79 (839)
+..+.++ ...+...|+|+|.+|+|||||..++...
T Consensus 5 ~~~~~~~-~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 5 FTRIWRL-FNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHHHH-HTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHHh-cCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 3445553 3444567889999999999999998743
No 500
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=90.37 E-value=0.33 Score=50.38 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=24.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 003203 55 NVNMIGVYGIGGVGKTALMHEVLFEAKK 82 (839)
Q Consensus 55 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 82 (839)
+..+|+|+|.+|+|||||...+......
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 3679999999999999999999886643
Done!