BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003204
(839 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R7X2|SR140_PONAB U2 snRNP-associated SURP motif-containing protein OS=Pongo abelii
GN=U2SURP PE=2 SV=1
Length = 1028
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 219/579 (37%), Positives = 321/579 (55%), Gaps = 42/579 (7%)
Query: 32 ARLYAEFVESFQGDSGPGSKAFVRGGTIDPNDKLKEAEGEKSKDGVSVPKKGSRYVPSFI 91
A +Y EF+ +F+G G K FVRGG ++ + E + ++ K + K SR+
Sbjct: 114 AEIYEEFLAAFEGSDGNKVKTFVRGGVVNAAKEEHETDEKRGK----IYKPSSRFADQKN 169
Query: 92 PPPLAAKGKD-SERKKEEERP---REKDRGKSRNIDNFMEELKHEQEMRERRNQER---- 143
PP ++ + S E ++P + + K N++ F EELK QE R+ R++ +
Sbjct: 170 PPNQSSNERPPSLLVIETKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLS 229
Query: 144 -----EHWRDGRHTESSAPSSRF-DELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQV 197
+ DG+ APS R + DD+ PGS D GDP TTNLY+GN++PQ+
Sbjct: 230 RFEPPQSDSDGQRRSMDAPSRRNRSSVLDDY-----APGSHDVGDPSTTNLYLGNINPQM 284
Query: 198 DENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 257
+E L + FGRFGP+ASVKIMWPRT+EER R+RNCGFVAFMNR D + A + G ++
Sbjct: 285 NEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMS 344
Query: 258 YELKIGWGKSV-----------ALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTTV 306
+E+K+GWGK+V ++ LP PPP + ++ L P+ P+
Sbjct: 345 FEMKLGWGKAVPIPPHPIYIPPSMMEHTLP-PPPSGLPFNAQPRER--LKNPNA-PMLPP 400
Query: 307 PSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNF 366
P + T + + V+ P +R+L +I + +V+ G FE IM R NP+F F
Sbjct: 401 PKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRF 460
Query: 367 LFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPTSKSPEHEKESG 426
LFE + H YY W+LYS QGD+ +WRTE F M W PP L E++
Sbjct: 461 LFENQTPAHVYYRWKLYSILQGDSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQET 520
Query: 427 TTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVL 486
+ S++ L + QRD+ E++LR LT ++ I +AM F L+NA+AA EIV+ +
Sbjct: 521 EAFVEEPSKKG----ALKEEQRDKLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCI 576
Query: 487 TESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSI 546
TESL++ +TP+P K+ARL LVSDVL+NSSA V NAS YR FE L I N YR+I
Sbjct: 577 TESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRKFFETKLCQIFSDLNATYRTI 636
Query: 547 TGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 585
G + +E K+RV+ + W DW ++ + ++ L+ FL
Sbjct: 637 QGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFL 675
>sp|O15042|SR140_HUMAN U2 snRNP-associated SURP motif-containing protein OS=Homo sapiens
GN=U2SURP PE=1 SV=2
Length = 1029
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 219/580 (37%), Positives = 322/580 (55%), Gaps = 43/580 (7%)
Query: 32 ARLYAEFVESFQGDSGPGSKAFVRGGTIDPNDKLKEAEGEKSKDGVSVPKKGSRYVPSFI 91
A +Y EF+ +F+G G K FVRGG ++ + E + ++ K + K SR+
Sbjct: 114 AEIYEEFLAAFEGSDGNKVKTFVRGGVVNAAKEEHETDEKRGK----IYKPSSRFADQKN 169
Query: 92 PPPLAAKGKD-SERKKEEERP---REKDRGKSRNIDNFMEELKHEQEMRERRNQER---- 143
PP ++ + S E ++P + + K N++ F EELK QE R+ R++ +
Sbjct: 170 PPNQSSNERPPSLLVIETKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLS 229
Query: 144 -----EHWRDGRHTESSAPS--SRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQ 196
+ DG+ APS +R + DD+ PGS D GDP TTNLY+GN++PQ
Sbjct: 230 RFEPPQSDSDGQRRSMDAPSRRNRSSGVLDDY-----APGSHDVGDPSTTNLYLGNINPQ 284
Query: 197 VDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY 256
++E L + FGRFGP+ASVKIMWPRT+EER R+RNCGFVAFMNR D + A + G ++
Sbjct: 285 MNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIM 344
Query: 257 EYELKIGWGKSV-----------ALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTT 305
+E+K+GWGK+V ++ LP PPP + ++ L P+ P+
Sbjct: 345 SFEMKLGWGKAVPIPPHPIYIPPSMMEHTLP-PPPSGLPFNAQPRER--LKNPNA-PMLP 400
Query: 306 VPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFN 365
P + T + + V+ P +R+L +I + +V+ G FE IM R NP+F
Sbjct: 401 PPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFR 460
Query: 366 FLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPTSKSPEHEKES 425
FLFE + H YY W+LYS QGD+ +WRTE F M W PP L E++
Sbjct: 461 FLFENQTPAHVYYRWKLYSILQGDSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQE 520
Query: 426 GTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEV 485
+ S++ L + QRD+ E++LR LT ++ I +AM F L+NA+AA EIV+
Sbjct: 521 TEAFVEEPSKKG----ALKEEQRDKLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDC 576
Query: 486 LTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRS 545
+TESL++ +TP+P K+ARL LVSDVL+NSSA V NAS YR FE L I N YR+
Sbjct: 577 ITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRKFFETKLCQIFSDLNATYRT 636
Query: 546 ITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 585
I G + +E K+RV+ + W DW ++ + ++ L+ FL
Sbjct: 637 IQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFL 676
>sp|Q6NV83|SR140_MOUSE U2 snRNP-associated SURP motif-containing protein OS=Mus musculus
GN=U2surp PE=1 SV=3
Length = 1029
Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust.
Identities = 218/581 (37%), Positives = 320/581 (55%), Gaps = 43/581 (7%)
Query: 31 TARLYAEFVESFQGDSGPGSKAFVRGGTIDPNDKLKEAEGEKSKDGVSVPKKGSRYVPSF 90
A +Y EF+ +F+G G K FVRGG ++ E + ++ K + K SR+
Sbjct: 113 AAEIYEEFLAAFEGSDGNKVKTFVRGGVVNAAKDEHETDEKRGK----IYKPSSRFADQK 168
Query: 91 IPPPLAAKGKD-SERKKEEERP---REKDRGKSRNIDNFMEELKHEQEMRERRNQER--- 143
PP ++ + S E ++P + + K N++ F EELK QE R+ R++ +
Sbjct: 169 NPPNQSSNERPPSLLVIETKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRL 228
Query: 144 ------EHWRDGRHTESSAPS--SRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 195
+ DG+ PS +R + DD+ PGS D GDP TTNLY+GN++P
Sbjct: 229 SRFEPPQSDSDGQRRSMDVPSRRNRSSGVLDDY-----APGSHDVGDPSTTNLYLGNINP 283
Query: 196 QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV 255
Q++E L + FGRFGP+ASVKIMWPRT+EER R+RNCGFVAFMNR D + A + G ++
Sbjct: 284 QMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMI 343
Query: 256 YEYELKIGWGKSV-----------ALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVT 304
+E+K+GWGK+V ++ LP PPP + ++ L P+ P+
Sbjct: 344 MSFEMKLGWGKAVPIPPHPIYIPPSMMEHTLP-PPPSGLPFNAQPRER--LKNPNA-PML 399
Query: 305 TVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLF 364
P + T + + V+ P +R+L +I + +V+ G FE IM R NP+F
Sbjct: 400 PPPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMF 459
Query: 365 NFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPTSKSPEHEKE 424
FLFE + H YY W+LYS QGD+ +WRTE F M W PP L E++
Sbjct: 460 RFLFENQTPAHVYYRWKLYSILQGDSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQ 519
Query: 425 SGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVE 484
+ S++ L + QRD+ E++LR LT ++ I +AM F L+NA+AA EIV+
Sbjct: 520 ETEAFVEEPSKKG----ALKEEQRDKLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVD 575
Query: 485 VLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYR 544
+TESL++ +TP+P K+ARL LVSDVL+NSSA V NAS YR FE L I N YR
Sbjct: 576 CITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRKFFETKLCQIFSDLNATYR 635
Query: 545 SITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 585
+I G + +E K+RV+ + W DW ++ + ++ L+ FL
Sbjct: 636 TIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFL 676
>sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2
Length = 672
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 174 LPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCG 233
LP + + DP T ++VG L P+ E L F FGPI +V+I +NCG
Sbjct: 348 LPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRI---------PNGKNCG 398
Query: 234 FVAFMNRADGQAAKDEMQGVVVYEYELKIGWGK 266
FV F R D +A+ +QG +V +++ WG+
Sbjct: 399 FVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGR 431
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 9/94 (9%)
Query: 176 GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 235
GS DGD T ++VG L +V + L ++F +FG + SVKI P + CGFV
Sbjct: 285 GSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKI--PAG-------KGCGFV 335
Query: 236 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 269
F +R+ Q A ++ G ++ + +++ WG+S A
Sbjct: 336 QFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPA 369
Score = 33.9 bits (76), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 247
+++G+L +DE++L F + G + SVKI+ R ++ + +R GFV F A +
Sbjct: 86 IWIGDLQQWMDESYLHSCFSQAGEVISVKII--RNKQTGQSER-YGFVEFNTHAAAEKVL 142
Query: 248 DEMQGVVV 255
G ++
Sbjct: 143 QSYNGTMM 150
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 176 GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 235
GS DG+ + ++VG L V E L++ F FG + SVKI + CGFV
Sbjct: 317 GSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKI---------PVGKGCGFV 367
Query: 236 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 267
F NR + A + G V+ + +++ WG+S
Sbjct: 368 QFANRQSAEEAIGNLNGTVIGKNTVRLSWGRS 399
Score = 41.2 bits (95), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 188 LYVGNLSPQVDENFLLRTF-GRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
++VG+L+P V + LL TF GR+ + K++ + R + GFV F + + A
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVV---IDSNTGRSKGYGFVRFGDENERSRA 271
Query: 247 KDEMQGVVVYEYELKIGWGKSVALPSQA 274
EM G ++++G +A P +A
Sbjct: 272 MTEMNGAFCSSRQMRVG----IATPKRA 295
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 15/84 (17%)
Query: 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNC-----GFVAFMNRAD 242
L+VG+L +DE +L F ++SVK++ R ++ C GFV F++R+
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVI--------RNKQTCQSEGYGFVEFLSRSA 172
Query: 243 GQAAKDEMQGVVV--YEYELKIGW 264
+ A GV + E ++ W
Sbjct: 173 AEEALQSFSGVTMPNAEQPFRLNW 196
>sp|Q10200|YBY1_SCHPO Uncharacterized protein C11C11.01 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC11C11.01 PE=1 SV=2
Length = 466
Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 24/217 (11%)
Query: 443 LTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKV- 501
LT R + E +++ L E+ I + FA+++ + EI + + + TKV
Sbjct: 209 LTKLDRAKLEWLIQGLNCEKGSIGNLLCFAVEHVNNHVEITDAFLKEFFNDQPTDDTKVY 268
Query: 502 -------------ARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLY---RS 545
+ + L++D+L N + YR FE P + +DLY +
Sbjct: 269 DDDYINERGEKKLSLIYLMNDILFNGISGTSLVWRYRFSFE---PHVERLLDDLYLFSKR 325
Query: 546 ITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVTPFHSICGDAPEI 605
+ GRI + ++V+KV++VW W F + + F SGN+ +P I A ++
Sbjct: 326 LGGRIKEDIFCKKVVKVIEVWKTWIAFQEETLERAWRNF--SGNTPQSP--QINSAALKV 381
Query: 606 DKKNNSEDTCDLSKTNQDTALAMGKGAAIKELMNLPL 642
+ KN+ + ++ QD G + EL+N+
Sbjct: 382 ETKNSWTAISEETEGLQDDEEYNGIPVDVNELLNVEF 418
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 11/102 (10%)
Query: 168 FDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERR 227
+ P+G L + +GD T ++VG L V + L + F FG I SVKI
Sbjct: 288 YMPNGTL--TRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI---------P 336
Query: 228 RQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 269
+ CGFV F+NR + + A +++ G V+ + +++ WG++ A
Sbjct: 337 VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPA 378
Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 247
++VG+LSP V +N L TF P SVK + R + GFV F + + A
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYP--SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
Query: 248 DEMQGVVVYEYELKIG 263
EM GV ++IG
Sbjct: 257 TEMNGVKCSSRAMRIG 272
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 168 FDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERR 227
+ PSG S +GD T ++VG L V + L + F FG I SVKI
Sbjct: 290 YMPSGAFTRS--EGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI---------P 338
Query: 228 RQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 269
+ CGFV F+NR + + A +++ G V+ + +++ WG++ A
Sbjct: 339 VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPA 380
Score = 34.7 bits (78), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 177 SFDDGDPQTTN------LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQR 230
SF G+ + N ++VG+L+P V + L TF P SVK + R +
Sbjct: 184 SFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYP--SVKAAKVVLDANTGRSK 241
Query: 231 NCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263
GFV F + + A EM GV ++IG
Sbjct: 242 GYGFVRFGDENERTKAMTEMNGVKCSSRAMRIG 274
>sp|Q15415|RBY1F_HUMAN RNA-binding motif protein, Y chromosome, family 1 member F/J
OS=Homo sapiens GN=RBMY1F PE=2 SV=2
Length = 496
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 5/137 (3%)
Query: 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 247
L++G L+ + +E L FG+ GPI+ V ++ RT + R F+ F N AD + A
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS----KSRGFAFITFENPADAKNAA 65
Query: 248 DEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTTVP 307
+M G ++ +K+ K + S PP RS G+ G SG +P
Sbjct: 66 KDMNGTSLHGKAIKVEQAKKPSFQSGGR-RRPPASSRNRSPSGSLRSARGSSGGTRGWLP 124
Query: 308 SQNSELVLTPNVPDIMV 324
S L PD+ +
Sbjct: 125 SHEGHLDDGGYTPDLKM 141
>sp|Q8CGZ0|CHERP_MOUSE Calcium homeostasis endoplasmic reticulum protein OS=Mus musculus
GN=Cherp PE=1 SV=1
Length = 936
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 323 MVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 382
M +PP+D+ LR+VID LA +V G FE+ ME+ + NP F+FLF G + ++YY +L
Sbjct: 3 MPMPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLF--GGEFYSYYKCKL 60
>sp|Q8IWX8|CHERP_HUMAN Calcium homeostasis endoplasmic reticulum protein OS=Homo sapiens
GN=CHERP PE=1 SV=3
Length = 916
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 323 MVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 382
M +PP+D+ LR+VID LA +V G FE+ ME+ + NP F+FLF G + ++YY +L
Sbjct: 3 MPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLF--GGEFYSYYKCKL 60
>sp|A6NDE4|RBY1B_HUMAN RNA-binding motif protein, Y chromosome, family 1 member B OS=Homo
sapiens GN=RBMY1B PE=2 SV=2
Length = 496
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 5/137 (3%)
Query: 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 247
L++G L+ + +E L FG+ GPI+ V ++ RT + R F+ F N AD + A
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS----KSRGFAFITFENPADAKNAA 65
Query: 248 DEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTTVP 307
+M G ++ +K+ K + S PP RS G+ G G +P
Sbjct: 66 KDMNGKSLHGKAIKVEQAKKPSFQSGGR-RRPPASSRNRSPSGSLRSARGSRGGTRGWLP 124
Query: 308 SQNSELVLTPNVPDIMV 324
SQ L PD+ +
Sbjct: 125 SQEGHLDDGGYTPDLKM 141
>sp|P0C7P1|RBY1D_HUMAN RNA-binding motif protein, Y chromosome, family 1 member D OS=Homo
sapiens GN=RBMY1D PE=2 SV=1
Length = 496
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 5/137 (3%)
Query: 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 247
L++G L+ + +E L FG+ GPI+ V ++ RT + R F+ F N AD + A
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS----KSRGFAFITFENPADAKNAA 65
Query: 248 DEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTTVP 307
+M G ++ +K+ K + S PP RS G+ G G +P
Sbjct: 66 KDMNGKSLHGKAIKVEQAKKPSFQSGGR-RRPPASSRNRSPSGSLRSARGSRGGTRGWLP 124
Query: 308 SQNSELVLTPNVPDIMV 324
SQ L PD+ +
Sbjct: 125 SQEGHLDDGGYTPDLKM 141
>sp|A6NEQ0|RBY1E_HUMAN RNA-binding motif protein, Y chromosome, family 1 member E OS=Homo
sapiens GN=RBMY1E PE=2 SV=1
Length = 496
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 5/137 (3%)
Query: 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 247
L++G L+ + +E L FG+ GPI+ V ++ RT + R F+ F N AD + A
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS----KSRGFAFITFENPADAKNAA 65
Query: 248 DEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTTVP 307
+M G ++ +K+ K + S PP RS G+ G G +P
Sbjct: 66 KDMNGKSLHGKAIKVEQAKKPSFQSGGR-RRPPASSRNRSPSGSLRSARGSRGGTRGWLP 124
Query: 308 SQNSELVLTPNVPDIMV 324
SQ L PD+ +
Sbjct: 125 SQEGHLDDGGYTPDLKM 141
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRAD 242
P + +LYVG L P V E L F GP+AS+++ + RR +V F N D
Sbjct: 77 PTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCR---DAVTRRSLGYAYVNFHNMED 133
Query: 243 GQAAKDEMQGVVVYEYELKIGWGK 266
G+ A DE+ ++ +I W +
Sbjct: 134 GEKALDELNYTLIKGRPCRIMWSQ 157
Score = 42.0 bits (97), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQ 244
T N+++ NL P +D L TF FG I S K+ +E + GFV F +
Sbjct: 167 TGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAV----DELGNAKGYGFVHFDSVESAN 222
Query: 245 AAKDEMQGVVVYEYELKIG 263
AA + + G+++ + ++ +G
Sbjct: 223 AAIEHVNGMLLNDKKVYVG 241
Score = 41.2 bits (95), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ NL ++ E FG+FG I S+ ++ +++ + R GFV + N Q
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLV----KDQNDKPRGFGFVNYANHECAQK 316
Query: 246 AKDEM 250
A DE+
Sbjct: 317 AVDEL 321
Score = 40.8 bits (94), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 63/160 (39%), Gaps = 27/160 (16%)
Query: 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 243
Q NL++ NL +VD+ L F FG I S KIM +E+ + + GFV + +
Sbjct: 362 QGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMT----DEQGKSKGFGFVCYTTPEEA 417
Query: 244 QAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKE-------------G 290
A EM ++ L + + + L A + R ++ G
Sbjct: 418 NKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQYG 477
Query: 291 AT-VILSGPSGPPVTT---------VPSQNSELVLTPNVP 320
AT ++ GP G P+ VP N + + P +P
Sbjct: 478 ATGPLIYGPGGYPIPAAVNGRGMPMVPGHNGPMPMYPGMP 517
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 176 GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 235
GS DG+ ++VG + P V + L + F +FG + SVKI + CGFV
Sbjct: 311 GSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKI---------PVGKGCGFV 361
Query: 236 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 267
F +R + A + + G V+ + +++ WG+S
Sbjct: 362 QFADRKSAEDAIESLNGTVIGKNTVRLSWGRS 393
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 15/114 (13%)
Query: 188 LYVGNLSPQVDENFLLRTFG-RFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
++VG+LSP V + L TF R+ + S K++ + R + GFV F + + A
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVV---IDSNTGRSKGYGFVRFGDENERSRA 260
Query: 247 KDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSG 300
EM G ++++G +A P +A+ + VIL+G G
Sbjct: 261 LTEMNGAYCSNRQMRVG----IATPKRAIANQ-------QQHSSQAVILAGGHG 303
Score = 36.6 bits (83), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 176 GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 235
GS DD L+VG+L +DE +L F G ++SVK++ + + GFV
Sbjct: 102 GSGDD----VKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQ---SEGYGFV 154
Query: 236 AFMNRADGQAAKDEMQGVVV--YEYELKIGW 264
F++RA + G V+ + +I W
Sbjct: 155 EFLSRAAAEEVLQNYSGSVMPNSDQPFRINW 185
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 180 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN 239
+ DP T ++VG L P V E L + F +G + VKI+ + CGFV F
Sbjct: 276 ESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIV---------AGKRCGFVQFGT 326
Query: 240 RADGQAAKDEMQGVVVYEYELKIGWGKS 267
RA + A + G + +++ WG+S
Sbjct: 327 RASAEQALSSLNGTQLGGQSIRLSWGRS 354
Score = 33.9 bits (76), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 188 LYVGNLSPQVDENFLLRTF-GRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
++VG+L+ V + L TF + + K++ T+ R + GFV F + ++ A
Sbjct: 178 IFVGDLAADVTDYILQETFKSVYSSVRGAKVV---TDRITGRSKGYGFVKFADESEQLRA 234
Query: 247 KDEMQGVVVYEYELKIGWG---KSVALPSQALPAPPPGQMAIRSKEGATVILSG 297
EM GV+ ++IG K V P +A P T+ + G
Sbjct: 235 MTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGG 288
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NAM8 PE=1 SV=2
Length = 523
Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRA 241
DP T +++G LS V E+ L F FG I VKI + CGFV +++R
Sbjct: 309 DPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKC---------CGFVQYVDRL 359
Query: 242 DGQAAKDEMQGVVVYEYELKIGWGKS---VALPSQAL 275
+AA MQG + +++ WG+S AL QA+
Sbjct: 360 SAEAAIAGMQGFPIANSRVRLSWGRSAKQTALLQQAM 396
Score = 41.2 bits (95), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 188 LYVGNLSPQVDENFLLRTF-GRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
++VG+L+P V E+ L F R+ + KI+ ++ + GFV F N + Q A
Sbjct: 165 IFVGDLAPNVTESQLFELFINRYASTSHAKIV---HDQVTGMSKGYGFVKFTNSDEQQLA 221
Query: 247 KDEMQGVVVYEYELKIG 263
EMQGV + +K+G
Sbjct: 222 LSEMQGVFLNGRAIKVG 238
>sp|P0DJD3|RBY1A_HUMAN RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Homo
sapiens GN=RBMY1A1 PE=1 SV=1
Length = 496
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 5/137 (3%)
Query: 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 247
L++G L+ + +E L FG+ GPI+ V ++ RT + R F+ F N AD + A
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS----KSRGFAFITFENPADAKNAA 65
Query: 248 DEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTTVP 307
+M G ++ +K+ K + S PP RS G+ G G +P
Sbjct: 66 KDMNGKSLHGKAIKVEQAKKPSFQSGGR-RRPPASSRNRSPSGSLRSARGSRGGTRGWLP 124
Query: 308 SQNSELVLTPNVPDIMV 324
S L PD+ +
Sbjct: 125 SHEGHLDDGGYTPDLKM 141
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 246 AKDEMQGVVVYEYELKIG 263
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 243
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEA 346
Query: 244 QAAKDEMQGVVVYEYELKIGWGK 266
A EM G +V L + +
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQ 369
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
+LYVG+L P V E L F GPI S+++ + RR +V F AD + A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAERA 68
Query: 247 KDEMQGVVVYEYELKIGWGK 266
D M V+ ++I W +
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQ 88
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
N+++ NL +D L TF FG I S K++ + + GFV F + + A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC-----DENGSKGYGFVHFETQEAAERA 154
Query: 247 KDEMQGVVVYEYELKIGWGKS 267
++M G+++ + ++ +G KS
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKS 175
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 246 AKDEMQGVVVYEYELKIG 263
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 243
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEA 346
Query: 244 QAAKDEMQGVVVYEYELKIGWGK 266
A EM G +V L + +
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQ 369
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
+LYVG+L P V E L F GPI S+++ + RR +V F AD + A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAERA 68
Query: 247 KDEMQGVVVYEYELKIGWGK 266
D M V+ ++I W +
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQ 88
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
N+++ NL +D L TF FG I S K++ + + GFV F + + A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC-----DENGSKGYGFVHFETQEAAERA 154
Query: 247 KDEMQGVVVYEYELKIGWGKS 267
++M G+++ + ++ +G KS
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKS 175
>sp|Q8CH02|SUGP1_MOUSE SURP and G-patch domain-containing protein 1 OS=Mus musculus
GN=Sugp1 PE=1 SV=1
Length = 643
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 321 DIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYY 378
+I V PPE R VI+ LA +V +GG E+ ME + NP F FL + S+E YY
Sbjct: 173 EIKVSPPEGAETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYY 230
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 324 VIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLY 383
V PPED +++ + LA ++ DGG E ++ R N F+FL++ S+ + YY +L
Sbjct: 251 VSPPEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKLD 310
Query: 384 SF 385
F
Sbjct: 311 EF 312
>sp|Q68FU8|SUGP1_RAT SURP and G-patch domain-containing protein 1 OS=Rattus norvegicus
GN=Sugp1 PE=2 SV=1
Length = 644
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 321 DIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYY 378
+I V PPE R VI+ LA +V +GG E+ ME + NP F FL + S+E YY
Sbjct: 174 EIKVSPPEGAETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYY 231
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 317 PNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHT 376
P V PPED +++ + LA ++ DGG E ++ R N F+FL++ S+ +
Sbjct: 245 PQAATQKVSPPEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYR 304
Query: 377 YYVWRLYSF 385
YY +L F
Sbjct: 305 YYKQKLEEF 313
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=csx1 PE=1 SV=1
Length = 632
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRA 241
DP T ++VG L+ + E L F FG I ++KI + + CGFV + ++
Sbjct: 293 DPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPF---------GKGCGFVQYSEKS 343
Query: 242 DGQAAKDEMQGVVVYEYELKIGWGKSVALPSQAL 275
+ A + MQG +V +++ WG + LP AL
Sbjct: 344 AAEKAINTMQGALVGTSHIRLAWGHNT-LPVSAL 376
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 176 GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 235
G+ + DP T ++VG + V E+ L FG+FG + VKI + CGFV
Sbjct: 268 GNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKI---------PAGKRCGFV 318
Query: 236 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 267
+ NRA + A + G + +++ WG+S
Sbjct: 319 QYANRACAEQALSVLNGTQLGGQSIRLSWGRS 350
Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRA 241
+L++G+L P +DEN+L+ FG G + K++ ++ GF+ F+N A
Sbjct: 81 SLWIGDLQPWMDENYLMNVFGLTGEATAAKVI---RNKQNGYSEGYGFIEFVNHA 132
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 246 AKDEMQGVVVYEYELKIG 263
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 243
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEA 346
Query: 244 QAAKDEMQGVVVYEYELKIGWGK 266
A EM G +V L + +
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQ 369
Score = 42.0 bits (97), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
+LYVG+L P E L F GPI S+++ + RR +V F AD + A
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAERA 68
Query: 247 KDEMQGVVVYEYELKIGWGK 266
D M V+ ++I W +
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQ 88
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
N+++ NL +D L TF FG I S K++ + + GFV F + + A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC-----DENGSKGYGFVHFETQEAAERA 154
Query: 247 KDEMQGVVVYEYELKIGWGKS 267
++M G+++ + ++ +G KS
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKS 175
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 246 AKDEMQGVVVYEYELKIG 263
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 243
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEA 346
Query: 244 QAAKDEMQGVVVYEYELKIGWGK 266
A EM G +V L + +
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQ 369
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
+LYVG+L P V E L F GPI S+++ + RR +V F AD + A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAERA 68
Query: 247 KDEMQGVVVYEYELKIGWGK 266
D M V+ ++I W +
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQ 88
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
N+++ NL +D L TF FG I S K++ + + GFV F + + A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC-----DENGSKGYGFVHFETQEAAERA 154
Query: 247 KDEMQGVVVYEYELKIGWGKS 267
++M G+++ + ++ +G KS
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKS 175
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 246 AKDEMQGVVVYEYELKIG 263
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 243
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEA 346
Query: 244 QAAKDEMQGVVVYEYELKIGWGK 266
A EM G +V L + +
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQ 369
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
+LYVG+L P V E L F GPI S+++ + RR +V F AD + A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAERA 68
Query: 247 KDEMQGVVVYEYELKIGWGK 266
D M V+ ++I W +
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQ 88
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
N+++ NL +D L TF FG I S K++ + + GFV F + + A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC-----DENGSKGYGFVHFETQEAAERA 154
Query: 247 KDEMQGVVVYEYELKIGWGKS 267
++M G+++ + ++ +G KS
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKS 175
>sp|Q8IWZ8|SUGP1_HUMAN SURP and G-patch domain-containing protein 1 OS=Homo sapiens
GN=SUGP1 PE=1 SV=2
Length = 645
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 321 DIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYY 378
+I V PPE R VI+ LA +V +GG E+ ME + NP F FL + S+E YY
Sbjct: 177 EIKVSPPEGAETRKVIEKLARFVAEGGPELEKVAMEDYKDNPAFAFLHDKNSREFLYY 234
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 324 VIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLY 383
V PPED ++++ + LA ++ DGG E ++ R N F+FL+E S+ + YY +L
Sbjct: 255 VSPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKLE 314
Query: 384 SF 385
F
Sbjct: 315 EF 316
>sp|P0DJD4|RBY1C_HUMAN RNA-binding motif protein, Y chromosome, family 1 member C OS=Homo
sapiens GN=RBMY1C PE=1 SV=1
Length = 496
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 5/137 (3%)
Query: 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 247
L++G L+ + +E L FG+ GPI+ V ++ RT + R F+ F N AD + A
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS----KSRGFAFITFENPADAKNAA 65
Query: 248 DEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTTVP 307
+M G ++ +K+ + + S PP RS G+ G G +P
Sbjct: 66 KDMNGKSLHGKAIKVEQAQKPSFQSGGR-RRPPASSRNRSPSGSLRSARGSRGGTRGWLP 124
Query: 308 SQNSELVLTPNVPDIMV 324
S L PD+ +
Sbjct: 125 SHEGHLDDGGYTPDLKM 141
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 180 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN 239
D DP T ++VG L V ++ L FG+FG + VKI + CGFV + N
Sbjct: 254 DNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKI---------PPGKRCGFVQYAN 304
Query: 240 RADGQAAKDEMQGVVVYEYELKIGWGKS 267
+A + A + G + +++ WG+S
Sbjct: 305 KASAEHALSVLNGTQLGGQSIRLSWGRS 332
Score = 37.0 bits (84), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 188 LYVGNLSPQVDENFLLRTFGR-FGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
++VG+L+P+V + L TF +G + K++ RT R + GFV F + + A
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTG---RSKGYGFVRFADENEQMRA 212
Query: 247 KDEMQGVVVYEYELKIGWGKSVALPSQALPAPP 279
EM G ++IG A ALP P
Sbjct: 213 MTEMNGQYCSTRPMRIG----PAANKNALPMQP 241
>sp|Q94C11|SUGP1_ARATH SURP and G-patch domain-containing protein 1-like protein
OS=Arabidopsis thaliana GN=At3g52120 PE=2 SV=1
Length = 443
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 309 QNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLF 368
Q V + V D+ PP D ++ V D LA +V G FE ++ G+ F FLF
Sbjct: 116 QRDTPVKSAKVSDVAPPPPSDPTVKKVADKLASFVAKHGRPFEHITRQKNPGDTPFKFLF 175
Query: 369 ELGSKEHTYYVWRL 382
+ ++ YYV+RL
Sbjct: 176 DENCADYKYYVFRL 189
>sp|Q96T37|RBM15_HUMAN Putative RNA-binding protein 15 OS=Homo sapiens GN=RBM15 PE=1 SV=2
Length = 977
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 182 DPQTTN--LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN 239
D Q N L++GNL V E+ L R F RFG I V I P R + GF+ F N
Sbjct: 368 DDQRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRP----SRGQTSTYGFLKFEN 423
Query: 240 RADGQAAKDEMQGVVVYEYELKIGWGKSV 268
AK M G ++ +KIG+GK+
Sbjct: 424 LDMSHRAKLAMSGKIIIRNPIKIGYGKAT 452
>sp|O35698|RBY1A_MOUSE RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Mus
musculus GN=Rbmy1a1 PE=1 SV=2
Length = 380
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 243
Q +++G L+ + + L FGRFGP+A V +M R E ++ R F+ F AD
Sbjct: 6 QPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDR---ETKKSRGFAFLTFRRLADA 62
Query: 244 QAAKDEMQGVVVYEYELKIGWGKS-VALPSQALPAPPPGQMAIRSKEGATVIL 295
+ A EM GV++ +K+ + +L S + PP + GA+ IL
Sbjct: 63 KNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPP----SFSRTRGASRIL 111
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQ 244
+ +LYVG L P V E L F GP+AS+++ + RR +V ++N ADG+
Sbjct: 45 SASLYVGELDPSVTEAMLFEIFNMIGPVASIRVC---RDAVTRRSLGYAYVNYLNAADGE 101
Query: 245 AAKDEMQGVVVYEYELKIGW 264
A + + ++ +I W
Sbjct: 102 RALEHLNYSLIKGQSCRIMW 121
Score = 37.4 bits (85), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
NLYV NL + D++ L F FG I S K+M ++ R GFV + + +
Sbjct: 330 VNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVM----RDDSGVSRGFGFVCYSSPDEATK 385
Query: 246 AKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKE 289
A EM G ++ L + + + QAL + Q+A R+++
Sbjct: 386 AVSEMNGKMIGTKPLYVALAQRKDVRRQALES----QIAQRAQQ 425
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
N+++ NL +D L TF FG I S K+ +E + R FV + AA
Sbjct: 135 NIFIKNLDQSIDNKALHDTFAAFGDILSCKV----GTDENGKSRGFAFVHYSTGEAADAA 190
Query: 247 KDEMQGVVVYEYELKIG 263
+ G+++ + ++ +G
Sbjct: 191 IKAVNGMLLNDKKVYVG 207
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQ 244
+ +LYVG L P V E L F GP+AS+++ + RR +V ++N ADG+
Sbjct: 45 SASLYVGELDPSVTEAMLFEIFNMIGPVASIRVC---RDAVTRRSLGYAYVNYLNAADGE 101
Query: 245 AAKDEMQGVVVYEYELKIGW 264
A + + ++ +I W
Sbjct: 102 RALEHLNYSLIKGQSCRIMW 121
Score = 37.4 bits (85), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
NLYV NL + D++ L F FG I S K+M ++ R GFV + + +
Sbjct: 330 VNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVM----RDDSGVSRGFGFVCYSSPDEATK 385
Query: 246 AKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKE 289
A EM G ++ L + + + QAL + Q+A R+++
Sbjct: 386 AVSEMNGKMIGTKPLYVALAQRKDVRRQALES----QIAQRAQQ 425
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
N+++ NL +D L TF FG I S K+ +E + R FV + AA
Sbjct: 135 NIFIKNLDQSIDNKALHDTFAAFGDILSCKV----GTDENGKSRGFAFVHYSTGEAADAA 190
Query: 247 KDEMQGVVVYEYELKIG 263
+ G+++ + ++ +G
Sbjct: 191 IKAVNGMLLNDKKVYVG 207
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQ 244
T NL+VG+L+ VD+ L F F S +MW + + R GFV+F ++ D Q
Sbjct: 161 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMW---DMQTGSSRGYGFVSFTSQDDAQ 217
Query: 245 AAKDEMQGVVVYEYELKIGWG 265
A D MQG + L+I W
Sbjct: 218 NAMDSMQGQDLNGRPLRINWA 238
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 169 DPSGKLPGSFDDGDPQTTN--LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEER 226
DPS +P + G +T++ LYVGNL + E+ L + F GPIA++KIM ++
Sbjct: 57 DPS-VVPANAITGGRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMI----DKN 111
Query: 227 RRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265
+ N FV + D A + G + +KI W
Sbjct: 112 NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA 150
>sp|Q60990|RBY1B_MOUSE RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus
musculus GN=Rbmy1b PE=2 SV=3
Length = 380
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 243
Q +++G L+ + + L FGRFGP+A V +M R E ++ R F+ F AD
Sbjct: 6 QPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDR---ETKKSRGFAFLTFRRPADA 62
Query: 244 QAAKDEMQGVVVYEYELKIGWGKS-VALPSQALPAPPPGQMAIRSKEGATVIL 295
+ A EM GV++ +K+ + +L S + PP + GA+ IL
Sbjct: 63 KNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPP----SFSRTRGASRIL 111
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
N+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q A
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQKA 247
Query: 247 KDEMQGVVVYEYELKIG 263
DEM G + ++ +G
Sbjct: 248 VDEMNGKELNGKQIYVG 264
Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 243
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 292 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEA 346
Query: 244 QAAKDEMQGVVVYEYELKIGWGK 266
A EM G +V L + +
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQ 369
Score = 42.4 bits (98), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQ 244
T +LYVG+L P V E L F GPI S++I N +V F + D +
Sbjct: 10 TASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSG---SSNYAYVNFQHTKDAE 66
Query: 245 AAKDEMQGVVVYEYELKIGWGK 266
A D M V+ ++I W +
Sbjct: 67 HALDTMNFDVIKGKPVRIMWSQ 88
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 179 DDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFM 238
D GD +LYVG L P V E L F GP+ SV++ + RR +V F
Sbjct: 41 DQGD--NASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVC---RDAITRRSLGYAYVNFH 95
Query: 239 NRADGQAAKDEMQGVVVYEYELKIGW 264
N+ADG A +E+ + E +I W
Sbjct: 96 NQADGIRALEELNYSPIKERPCRIMW 121
Score = 41.6 bits (96), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
N+Y+ NL P +D L TF FG I S KI +E R GFV + + ++A
Sbjct: 135 NIYIKNLDPAIDNKALHDTFSAFGQILSCKI----ATDEFGNSRGFGFVHYESAESAESA 190
Query: 247 KDEMQGVVVYEYELKIG 263
+ G+++ + ++ +G
Sbjct: 191 IQHVNGMLLNDKKVFVG 207
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 243
Q NLY+ NL +D++ L F G I S K+M +E + + GFV + + +
Sbjct: 328 QGVNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMV----DEAGKSKGFGFVCYSSPEEA 383
Query: 244 QAAKDEMQGVVV 255
A EM +V
Sbjct: 384 TKAVTEMNHRLV 395
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQ 244
T+LYVG L P V E L F G +AS+++ + RR +V F+N ADG+
Sbjct: 46 NTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVC---RDAVTRRSLGYAYVNFLNAADGE 102
Query: 245 AAKDEMQGVVVYEYELKIGWGK 266
A +++ ++ +I W +
Sbjct: 103 RAMEQLNYSLIRNRPCRIMWSQ 124
Score = 37.0 bits (84), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y N+ P+V ++ + F +FG I S + +E + + GFV F + + Q
Sbjct: 227 TNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQ----RDEDGKSKGFGFVNFEDHNEAQK 282
Query: 246 AKDEMQ 251
A DE+
Sbjct: 283 AVDELH 288
Score = 34.7 bits (78), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 243
Q NLY+ N+ D+ L F FG I S KIM + R GFV + +
Sbjct: 328 QGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVS----RGFGFVCYSAPEEA 383
Query: 244 QAAKDEMQGVVV 255
A EM G ++
Sbjct: 384 NKAVSEMNGKML 395
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 243
+ +LYVG+L V E+ L R F GP+ S++I ++ RR +V F+ AD
Sbjct: 8 RMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRIC---RDQVTRRSLGYAYVNFLQLADA 64
Query: 244 QAAKDEMQGVVVYEYELKIGW 264
Q A D M ++ +++ W
Sbjct: 65 QKALDTMNFDIIKGKSIRLMW 85
Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 243
Q LY+ NL +D+ L F FG I+ VK+M +E + + G + F + D
Sbjct: 291 QGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVM-----QEEGQSKGFGLICFSSPEDA 345
Query: 244 QAAKDEMQGVVV 255
A EM G ++
Sbjct: 346 TKAMTEMNGRIL 357
Score = 36.6 bits (83), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N +D+ L F ++G SVK+M + + + GFV+F + +
Sbjct: 190 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSG----KSKGFGFVSFDSHEAAKK 245
Query: 246 AKDEMQG 252
A +EM G
Sbjct: 246 AVEEMNG 252
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
N+++ NL +D L F FG I S K+M + + + FV F N++ A
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM-----SDDQGSKGYAFVHFQNQSAADRA 153
Query: 247 KDEMQGVVVYEYELKIG 263
+EM G ++ ++ +G
Sbjct: 154 IEEMNGKLLKGCKVFVG 170
>sp|Q09511|RSP4_CAEEL Probable splicing factor, arginine/serine-rich 4 OS=Caenorhabditis
elegans GN=rsp-4 PE=3 SV=1
Length = 196
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
T+L + NLS Q N L RTF R+G I V I PR ++ R+ + GFV F R D +
Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHI--PR-DKYSRQSKGFGFVRFYERRDAEH 75
Query: 246 AKDEMQGVVVYEYELKIGWGK 266
A D G +V EL++ K
Sbjct: 76 ALDRTDGKLVDGRELRVTLAK 96
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRAD 242
P TN+YV NL ++ ++ L +TFG++G I+S +M +++ R+ GFV F++
Sbjct: 236 PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVM----KDQSGNSRSFGFVNFVSPEA 291
Query: 243 GQAAKDEMQGVVVYEYELKIGWGK 266
A ++M G+ + E L +G +
Sbjct: 292 AAVAVEKMNGISLGEDVLYVGRAQ 315
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 169 DPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRR 228
DPS +L G N+++ NL +D L TF FG I S K+ + R
Sbjct: 137 DPSTRLSGK--------GNVFIKNLDASIDNKALYETFSSFGTILSCKVAM----DVVGR 184
Query: 229 QRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263
+ GFV F QAA D++ G+++ + ++ +G
Sbjct: 185 SKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVG 219
Score = 41.2 bits (95), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 243
Q +NLY+ NL V++ L F +G + S K+M + R GFVA+ N +
Sbjct: 340 QGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMM----NSQGLSRGFGFVAYSNPEEA 395
Query: 244 QAAKDEMQGVVVYEYELKIGWGK 266
A EM G ++ L + +
Sbjct: 396 LLAMKEMNGKMIGRKPLYVALAQ 418
Score = 37.4 bits (85), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQ 244
++LYVG+L P V+E+ LL F + P+ ++++ T R +V F N D
Sbjct: 58 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTH----RSLGYAYVNFANPEDAS 113
Query: 245 AAKDEMQGVVVYEYELKI 262
A + + + + ++I
Sbjct: 114 RAMESLNYAPIRDRPIRI 131
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 181 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNR 240
D + ++VG LS V E L F FG I VKI + CGFV F+NR
Sbjct: 298 ADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKI---------PPGKGCGFVQFVNR 348
Query: 241 ADGQAAKDEMQGVVVYEYELKIGWGKS 267
+ A +++QG + +++ WG++
Sbjct: 349 QSAEIAINQLQGYPLGNSRIRLSWGRN 375
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 188 LYVGNLSPQVDENFLLRTFG-RFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
++VG+LSP V+E + F R+ S KIM T+ + R GFV F + D ++A
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIM---TDPQTNVSRGYGFVRFTDENDQKSA 244
Query: 247 KDEMQGVVVYEYELKIG 263
EMQG + + +++G
Sbjct: 245 LAEMQGQICGDRPIRVG 261
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 179 DDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFM 238
DDG P+T LYVGNLS V E +L+ F + GP S K++ E C FV F
Sbjct: 4 DDGQPRT--LYVGNLSRDVTEVLILQLFSQIGPCKSCKMI----TEHTSNDPYC-FVEFY 56
Query: 239 NRADGQAAKDEMQGVVVYEYELKIGWGKS 267
D AA M G + E+K+ W +
Sbjct: 57 EHRDAAAALAAMNGRKILGKEVKVNWATT 85
Score = 37.0 bits (84), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
+++VG+LSP++ + F FG I+ +++ + + + GFV+F N+ D + A
Sbjct: 98 HVFVGDLSPEITTEDIKSAFAPFGKISDARVV---KDMATGKSKGYGFVSFYNKLDAENA 154
Query: 247 KDEMQGVVVYEYELKIGW 264
M G + +++ W
Sbjct: 155 IVHMGGQWLGGRQIRTNW 172
>sp|Q4WAQ9|PPIL4_ASPFU Peptidyl-prolyl cis-trans isomerase-like 4 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=cyp6 PE=3 SV=1
Length = 459
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 172 GKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRN 231
G LP F + P L+V L+P + L F RFGPI S +++ + + +
Sbjct: 236 GDLP--FAEVKPPENVLFVCKLNPVTQDEDLQLIFSRFGPILSCEVIRDKRTGDSLQY-- 291
Query: 232 CGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQA 274
F+ F N+ D + A +MQGV++ ++ + + + +SV+ S++
Sbjct: 292 -AFIEFENQKDCEQAYFKMQGVLIDDHRIHVDFSQSVSKLSES 333
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 169 DPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRR 228
DPS +L G N+++ NL +D L TF FG I S K+ T R
Sbjct: 127 DPSTRLSGK--------GNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTG----R 174
Query: 229 QRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263
+ GFV F QAA D++ G+++ + ++ +G
Sbjct: 175 SKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVG 209
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRAD 242
P+ TN+YV NL ++ E+ L +TFG+FG I+S +M ++ R GFV F
Sbjct: 226 PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVM----RDQSGNSRCFGFVNFECTEA 281
Query: 243 GQAAKDEMQGVVVYEYELKIGWGK 266
+A ++M G+ + + L +G +
Sbjct: 282 AASAVEKMNGISLGDDVLYVGRAQ 305
Score = 40.8 bits (94), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 243
Q NLY+ NL VD+ L F +G + S K+M + R GFVA+ N +
Sbjct: 330 QGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVML----NPQGMSRGFGFVAYSNPEEA 385
Query: 244 QAAKDEMQGVVVYEYELKIGWGK 266
A EM G ++ L I +
Sbjct: 386 LRALSEMNGKMIGRKPLYIALAQ 408
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 15/117 (12%)
Query: 156 APSSRFDELPD-DFDPSGKLPGSF---------DDGDPQTTNLYVGNLSPQVDENFLLRT 205
AP++ D++P S ++P S D P ++ LY G+L P+V E L
Sbjct: 10 APATMVDQVPSPTAQTSVQVPVSIPLPSPVVVADQTHPNSS-LYAGDLDPKVTEAHLFDL 68
Query: 206 FGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262
F + SV++ ++ RR ++ F N D A + + +++ ++I
Sbjct: 69 FKHVANVVSVRV----CRDQNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRI 121
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 245
TN+Y+ N +++ L FG++GP SVK+M ++ + + GFV+F D Q
Sbjct: 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVM----TDDNGKSKGFGFVSFERHEDAQK 246
Query: 246 AKDEMQG 252
A DEM G
Sbjct: 247 AVDEMNG 253
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 243
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEA 346
Query: 244 QAAKDEMQGVVVYEYELKIGWGK 266
A EM G +V L + +
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQ 369
Score = 40.8 bits (94), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
N+++ NL +D L TF FG I S K++ + + GFV F + + A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC-----DENGSKGYGFVHFETQEAAERA 154
Query: 247 KDEMQGVVVYEYELKIGWGKS 267
D+M G+++ + ++ +G KS
Sbjct: 155 IDKMNGMLLNDRKVFVGRFKS 175
Score = 40.0 bits (92), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 246
+LYVG+L V E L F GPI S+++ + RR +V F AD + A
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAERA 68
Query: 247 KDEMQGVVVYEYELKIGWGK 266
D M V+ ++I W +
Sbjct: 69 LDTMNFDVIKGRPVRIMWSQ 88
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 334,222,141
Number of Sequences: 539616
Number of extensions: 15600705
Number of successful extensions: 50094
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 743
Number of HSP's that attempted gapping in prelim test: 45251
Number of HSP's gapped (non-prelim): 3938
length of query: 839
length of database: 191,569,459
effective HSP length: 126
effective length of query: 713
effective length of database: 123,577,843
effective search space: 88111002059
effective search space used: 88111002059
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)