Query 003204
Match_columns 839
No_of_seqs 509 out of 2124
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 19:02:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0151 Predicted splicing reg 100.0 3E-140 6E-145 1175.7 35.2 754 1-838 3-761 (877)
2 smart00582 RPR domain present 99.9 9E-23 1.9E-27 193.4 9.5 120 451-582 2-121 (121)
3 KOG2669 Regulator of nuclear m 99.7 4.4E-18 9.5E-23 183.3 10.5 129 444-585 2-130 (325)
4 cd03562 CID CID (CTD-Interacti 99.6 4.8E-15 1.1E-19 139.4 8.3 108 451-574 4-114 (114)
5 PLN03134 glycine-rich RNA-bind 99.6 4.3E-14 9.2E-19 138.8 14.3 83 184-269 33-115 (144)
6 PF01805 Surp: Surp module; I 99.5 3E-15 6.6E-20 123.3 0.6 54 332-385 1-54 (55)
7 KOG0148 Apoptosis-promoting RN 99.5 1.8E-13 4E-18 142.3 10.5 137 114-270 100-240 (321)
8 KOG4368 Predicted RNA binding 99.4 1.3E-13 2.7E-18 154.7 7.4 133 445-588 100-238 (757)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 4.9E-13 1.1E-17 148.0 11.7 82 184-268 268-349 (352)
10 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 4.3E-13 9.4E-18 148.5 10.7 81 185-268 3-83 (352)
11 smart00648 SWAP Suppressor-of- 99.4 2.9E-14 6.2E-19 117.1 0.9 52 334-386 2-53 (54)
12 PF00076 RRM_1: RNA recognitio 99.4 1.1E-12 2.3E-17 110.6 9.2 70 188-261 1-70 (70)
13 TIGR01659 sex-lethal sex-letha 99.4 1.1E-12 2.5E-17 145.8 10.6 85 180-267 102-186 (346)
14 KOG0122 Translation initiation 99.3 6.9E-12 1.5E-16 129.3 11.0 82 184-268 188-269 (270)
15 KOG0149 Predicted RNA-binding 99.3 9.2E-12 2E-16 128.0 10.3 83 181-267 8-90 (247)
16 TIGR01659 sex-lethal sex-letha 99.3 3.6E-11 7.9E-16 133.9 14.0 84 184-270 192-277 (346)
17 KOG0121 Nuclear cap-binding pr 99.3 7.4E-12 1.6E-16 117.8 6.8 78 184-264 35-112 (153)
18 TIGR01645 half-pint poly-U bin 99.3 1.5E-11 3.3E-16 144.4 11.0 79 184-265 106-184 (612)
19 TIGR01645 half-pint poly-U bin 99.3 2.5E-11 5.3E-16 142.6 12.1 82 184-268 203-284 (612)
20 PLN03120 nucleic acid binding 99.3 2.9E-11 6.3E-16 127.9 11.4 80 185-271 4-83 (260)
21 KOG0113 U1 small nuclear ribon 99.2 3.6E-11 7.8E-16 127.0 10.8 83 184-269 100-182 (335)
22 PF04818 CTD_bind: RNA polymer 99.2 1.1E-12 2.3E-17 111.3 -0.8 64 500-573 1-64 (64)
23 PLN03213 repressor of silencin 99.2 3E-11 6.5E-16 133.8 9.7 78 184-268 9-88 (759)
24 KOG0107 Alternative splicing f 99.2 2.4E-11 5.3E-16 120.0 7.9 78 184-269 9-86 (195)
25 KOG4207 Predicted splicing fac 99.2 2.6E-11 5.6E-16 122.3 7.9 82 185-269 13-94 (256)
26 PF14259 RRM_6: RNA recognitio 99.2 7.4E-11 1.6E-15 100.4 9.3 70 188-261 1-70 (70)
27 KOG0125 Ataxin 2-binding prote 99.2 5.5E-11 1.2E-15 126.9 9.6 80 185-269 96-175 (376)
28 TIGR01628 PABP-1234 polyadenyl 99.2 7.2E-11 1.6E-15 139.5 10.3 79 186-267 1-79 (562)
29 TIGR01622 SF-CC1 splicing fact 99.2 9.2E-11 2E-15 134.8 10.9 83 183-268 184-266 (457)
30 TIGR01628 PABP-1234 polyadenyl 99.1 1.2E-10 2.5E-15 137.8 10.8 82 182-267 282-363 (562)
31 TIGR01642 U2AF_lg U2 snRNP aux 99.1 3.2E-10 7E-15 132.0 12.5 83 184-269 294-376 (509)
32 KOG0111 Cyclophilin-type pepti 99.1 4.8E-11 1E-15 121.1 4.8 85 184-271 9-93 (298)
33 KOG0148 Apoptosis-promoting RN 99.1 1.2E-10 2.6E-15 121.6 7.5 82 185-269 62-143 (321)
34 TIGR01648 hnRNP-R-Q heterogene 99.1 2.4E-10 5.1E-15 134.1 10.2 78 184-265 57-135 (578)
35 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 4.3E-10 9.3E-15 130.8 11.9 81 182-270 272-353 (481)
36 COG0724 RNA-binding proteins ( 99.1 3.6E-10 7.7E-15 116.6 10.0 80 185-267 115-194 (306)
37 smart00362 RRM_2 RNA recogniti 99.1 6.3E-10 1.4E-14 92.2 9.6 72 187-263 1-72 (72)
38 KOG0145 RNA-binding protein EL 99.1 3.2E-10 7E-15 117.6 9.4 86 181-269 37-122 (360)
39 PLN03121 nucleic acid binding 99.1 7.9E-10 1.7E-14 115.6 11.4 75 183-264 3-77 (243)
40 KOG0126 Predicted RNA-binding 99.1 4.4E-11 9.5E-16 118.6 1.5 82 184-268 34-115 (219)
41 TIGR01622 SF-CC1 splicing fact 99.0 7.1E-10 1.5E-14 127.5 10.9 81 183-267 87-167 (457)
42 TIGR01648 hnRNP-R-Q heterogene 99.0 7E-10 1.5E-14 130.2 10.7 74 185-269 233-308 (578)
43 smart00360 RRM RNA recognition 99.0 1.3E-09 2.7E-14 90.0 8.2 71 190-263 1-71 (71)
44 KOG0117 Heterogeneous nuclear 99.0 1.4E-09 3E-14 120.3 10.1 82 181-265 79-161 (506)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 1.9E-09 4.1E-14 125.4 10.9 76 185-269 2-79 (481)
46 KOG0131 Splicing factor 3b, su 99.0 5.7E-10 1.2E-14 111.0 5.5 79 185-266 9-87 (203)
47 KOG0124 Polypyrimidine tract-b 99.0 4.9E-10 1.1E-14 120.6 5.4 77 185-264 113-189 (544)
48 cd00590 RRM RRM (RNA recogniti 99.0 4E-09 8.6E-14 87.9 9.7 74 187-264 1-74 (74)
49 KOG0108 mRNA cleavage and poly 99.0 1.2E-09 2.6E-14 124.1 8.4 81 186-269 19-99 (435)
50 PF12243 CTK3: CTD kinase subu 99.0 2.1E-09 4.6E-14 104.6 9.0 131 446-585 5-136 (139)
51 KOG0114 Predicted RNA-binding 98.9 3E-09 6.5E-14 97.1 8.8 75 184-264 17-91 (124)
52 KOG0105 Alternative splicing f 98.9 1.5E-09 3.3E-14 108.0 6.8 79 184-268 5-83 (241)
53 KOG0415 Predicted peptidyl pro 98.9 2.1E-09 4.6E-14 115.6 8.1 84 183-269 237-320 (479)
54 KOG0130 RNA-binding protein RB 98.9 2E-09 4.2E-14 102.4 6.6 83 184-269 71-153 (170)
55 KOG0117 Heterogeneous nuclear 98.9 2.2E-09 4.8E-14 118.6 7.6 74 185-269 259-332 (506)
56 PF13893 RRM_5: RNA recognitio 98.9 1.1E-08 2.4E-13 83.9 9.1 56 202-265 1-56 (56)
57 KOG0145 RNA-binding protein EL 98.9 8.3E-09 1.8E-13 107.3 9.8 79 184-265 277-355 (360)
58 KOG0131 Splicing factor 3b, su 98.8 2.6E-09 5.7E-14 106.3 5.3 83 184-269 95-178 (203)
59 KOG0153 Predicted RNA-binding 98.8 8E-09 1.7E-13 111.4 9.2 77 182-267 225-302 (377)
60 KOG0146 RNA-binding protein ET 98.8 2.6E-09 5.7E-14 111.3 4.9 86 180-268 280-365 (371)
61 KOG0109 RNA-binding protein LA 98.8 5.2E-09 1.1E-13 110.5 7.0 76 186-272 3-78 (346)
62 KOG0127 Nucleolar protein fibr 98.8 1.2E-08 2.6E-13 115.1 9.2 85 180-267 287-377 (678)
63 KOG0144 RNA-binding protein CU 98.8 4.2E-09 9E-14 116.0 5.2 82 184-269 123-207 (510)
64 KOG0132 RNA polymerase II C-te 98.8 9.4E-09 2E-13 119.8 7.5 76 185-269 421-496 (894)
65 KOG0144 RNA-binding protein CU 98.8 1.2E-08 2.7E-13 112.4 7.9 89 177-268 26-117 (510)
66 KOG0127 Nucleolar protein fibr 98.7 2.8E-08 6E-13 112.2 8.8 81 185-269 117-197 (678)
67 smart00361 RRM_1 RNA recogniti 98.7 4.2E-08 9.2E-13 84.4 8.0 63 199-262 2-69 (70)
68 KOG0147 Transcriptional coacti 98.7 2E-08 4.4E-13 113.8 6.4 77 188-267 281-357 (549)
69 KOG0109 RNA-binding protein LA 98.6 4.1E-08 9E-13 103.8 6.3 74 184-268 77-150 (346)
70 TIGR01642 U2AF_lg U2 snRNP aux 98.6 1.7E-07 3.7E-12 109.3 9.5 83 183-265 407-499 (509)
71 KOG4206 Spliceosomal protein s 98.5 2.1E-07 4.5E-12 96.1 7.7 78 186-269 10-91 (221)
72 KOG0123 Polyadenylate-binding 98.4 3.6E-07 7.9E-12 102.8 8.2 75 188-268 79-153 (369)
73 KOG4661 Hsp27-ERE-TATA-binding 98.4 4.5E-07 9.8E-12 102.5 6.9 82 185-269 405-486 (940)
74 KOG0123 Polyadenylate-binding 98.4 8E-07 1.7E-11 100.1 8.2 74 186-268 2-75 (369)
75 KOG0110 RNA-binding protein (R 98.4 3.9E-07 8.5E-12 106.1 5.6 85 182-269 610-694 (725)
76 KOG1548 Transcription elongati 98.3 1.5E-06 3.3E-11 94.1 8.2 88 178-269 127-222 (382)
77 KOG0110 RNA-binding protein (R 98.3 1.4E-06 3.1E-11 101.6 8.4 80 186-266 516-596 (725)
78 KOG4208 Nucleolar RNA-binding 98.3 1.7E-06 3.8E-11 88.2 7.8 77 185-264 49-126 (214)
79 KOG4212 RNA-binding protein hn 98.3 2.3E-06 5E-11 94.7 8.9 76 185-264 44-120 (608)
80 KOG0533 RRM motif-containing p 98.2 3E-06 6.6E-11 89.8 8.7 82 184-269 82-163 (243)
81 KOG4212 RNA-binding protein hn 98.2 1.7E-06 3.6E-11 95.8 6.8 75 182-264 533-607 (608)
82 KOG4205 RNA-binding protein mu 98.2 2E-06 4.3E-11 94.3 7.3 115 138-269 63-177 (311)
83 KOG1457 RNA binding protein (c 98.2 6.2E-06 1.3E-10 84.8 10.0 84 184-269 33-119 (284)
84 KOG4205 RNA-binding protein mu 98.1 1.7E-06 3.8E-11 94.8 4.7 82 184-269 5-86 (311)
85 KOG0124 Polypyrimidine tract-b 98.1 6.5E-06 1.4E-10 89.4 6.9 79 185-266 210-288 (544)
86 KOG4209 Splicing factor RNPS1, 98.1 7.4E-06 1.6E-10 86.7 7.3 83 182-268 98-180 (231)
87 KOG1190 Polypyrimidine tract-b 98.0 2.3E-05 5E-10 86.6 9.8 79 185-271 297-376 (492)
88 KOG0146 RNA-binding protein ET 98.0 9.4E-06 2E-10 85.3 5.6 78 185-266 19-99 (371)
89 KOG0106 Alternative splicing f 98.0 6.2E-06 1.3E-10 85.8 4.2 71 186-267 2-72 (216)
90 KOG0226 RNA-binding proteins [ 97.9 9.9E-06 2.1E-10 84.9 4.7 77 184-263 189-265 (290)
91 KOG1847 mRNA splicing factor [ 97.9 2.9E-06 6.3E-11 97.4 0.4 59 322-381 178-236 (878)
92 KOG0116 RasGAP SH3 binding pro 97.8 3.8E-05 8.1E-10 87.5 6.7 79 185-267 288-366 (419)
93 KOG4454 RNA binding protein (R 97.8 1.1E-05 2.3E-10 83.0 1.9 75 185-264 9-83 (267)
94 KOG4660 Protein Mei2, essentia 97.7 1.7E-05 3.7E-10 90.8 3.5 71 183-261 73-143 (549)
95 COG5175 MOT2 Transcriptional r 97.4 0.00058 1.3E-08 74.1 9.1 81 185-266 114-201 (480)
96 KOG1457 RNA binding protein (c 97.3 0.00017 3.6E-09 74.6 4.1 67 182-255 207-273 (284)
97 PF04059 RRM_2: RNA recognitio 97.3 0.0011 2.4E-08 61.2 8.8 81 186-269 2-88 (97)
98 PF11608 Limkain-b1: Limkain b 97.3 0.00079 1.7E-08 60.1 7.2 67 186-265 3-74 (90)
99 KOG0132 RNA polymerase II C-te 97.2 0.0013 2.9E-08 78.0 9.3 132 447-589 3-140 (894)
100 KOG1995 Conserved Zn-finger pr 97.0 0.00065 1.4E-08 74.7 4.5 85 182-269 63-155 (351)
101 KOG4206 Spliceosomal protein s 96.9 0.0032 7E-08 65.6 8.2 79 180-266 141-220 (221)
102 KOG0147 Transcriptional coacti 96.9 0.00052 1.1E-08 78.8 2.5 80 182-265 176-255 (549)
103 KOG4210 Nuclear localization s 96.7 0.00096 2.1E-08 73.0 3.2 81 185-269 185-265 (285)
104 KOG0120 Splicing factor U2AF, 96.7 0.0012 2.6E-08 76.5 3.4 81 185-268 289-369 (500)
105 KOG1855 Predicted RNA-binding 96.4 0.0032 6.9E-08 70.6 4.2 77 177-253 223-309 (484)
106 KOG0106 Alternative splicing f 96.3 0.0022 4.9E-08 67.0 2.8 68 184-262 98-165 (216)
107 KOG0120 Splicing factor U2AF, 96.3 0.011 2.4E-07 68.7 8.1 64 201-264 425-488 (500)
108 KOG4211 Splicing factor hnRNP- 96.1 0.017 3.8E-07 66.0 8.2 76 185-267 10-85 (510)
109 KOG1190 Polypyrimidine tract-b 95.9 0.017 3.7E-07 64.6 6.8 82 180-268 409-491 (492)
110 KOG0112 Large RNA-binding prot 95.8 0.016 3.5E-07 70.2 6.9 81 184-273 454-536 (975)
111 PF08777 RRM_3: RNA binding mo 95.8 0.023 5E-07 53.2 6.7 58 186-252 2-59 (105)
112 KOG3152 TBP-binding protein, a 95.8 0.0052 1.1E-07 65.0 2.5 75 184-259 73-157 (278)
113 KOG0112 Large RNA-binding prot 95.8 0.0029 6.3E-08 76.3 0.6 95 180-278 367-461 (975)
114 KOG0129 Predicted RNA-binding 95.6 0.025 5.5E-07 65.1 6.9 74 185-264 259-337 (520)
115 KOG1456 Heterogeneous nuclear 95.5 0.17 3.8E-06 56.2 12.8 82 181-270 283-365 (494)
116 PF14605 Nup35_RRM_2: Nup53/35 95.5 0.027 5.8E-07 46.3 5.0 52 186-247 2-53 (53)
117 KOG1456 Heterogeneous nuclear 95.4 0.059 1.3E-06 59.8 8.8 77 185-269 120-200 (494)
118 PF02037 SAP: SAP domain; Int 95.1 0.027 5.8E-07 42.4 3.4 33 638-670 2-34 (35)
119 PF05172 Nup35_RRM: Nup53/35/4 94.9 0.09 1.9E-06 49.0 7.2 79 185-266 6-90 (100)
120 KOG4676 Splicing factor, argin 94.8 0.074 1.6E-06 59.4 7.5 77 187-264 9-85 (479)
121 KOG4849 mRNA cleavage factor I 94.7 0.023 5E-07 62.3 3.2 75 185-262 80-156 (498)
122 KOG1548 Transcription elongati 94.6 0.095 2.1E-06 57.9 7.5 73 185-264 265-348 (382)
123 KOG0129 Predicted RNA-binding 94.3 0.086 1.9E-06 60.9 6.7 63 184-249 369-432 (520)
124 smart00513 SAP Putative DNA-bi 94.3 0.063 1.4E-06 40.2 3.9 33 638-670 2-34 (35)
125 KOG4307 RNA binding protein RB 94.2 0.13 2.8E-06 61.1 7.9 75 186-264 868-943 (944)
126 PF04847 Calcipressin: Calcipr 93.7 0.18 4E-06 51.9 7.1 63 199-270 9-73 (184)
127 PF08952 DUF1866: Domain of un 93.5 0.34 7.4E-06 48.0 8.2 52 201-264 52-103 (146)
128 KOG2193 IGF-II mRNA-binding pr 93.3 0.07 1.5E-06 60.0 3.7 72 186-266 2-74 (584)
129 KOG4211 Splicing factor hnRNP- 93.3 0.16 3.4E-06 58.5 6.4 76 185-264 103-178 (510)
130 KOG0128 RNA-binding protein SA 92.2 0.14 3E-06 62.2 4.3 80 185-268 736-815 (881)
131 PF15023 DUF4523: Protein of u 91.8 0.47 1E-05 46.7 6.7 73 182-265 83-159 (166)
132 KOG2314 Translation initiation 90.8 0.29 6.3E-06 57.1 4.9 74 186-263 59-139 (698)
133 KOG2202 U2 snRNP splicing fact 90.5 0.12 2.5E-06 55.2 1.3 61 200-264 83-144 (260)
134 KOG2416 Acinus (induces apopto 90.0 0.6 1.3E-05 54.9 6.5 77 184-269 443-523 (718)
135 KOG1996 mRNA splicing factor [ 89.7 0.72 1.6E-05 50.1 6.4 63 200-264 301-363 (378)
136 cd00197 VHS_ENTH_ANTH VHS, ENT 89.5 1 2.2E-05 42.3 6.7 99 461-568 17-115 (115)
137 KOG2068 MOT2 transcription fac 89.3 0.14 3.1E-06 56.4 0.9 81 186-267 78-162 (327)
138 KOG0128 RNA-binding protein SA 88.4 0.046 1E-06 66.1 -3.9 69 185-257 667-735 (881)
139 KOG1365 RNA-binding protein Fu 87.2 2.8 6E-05 47.3 9.0 75 185-263 280-357 (508)
140 KOG0115 RNA-binding protein p5 85.8 0.78 1.7E-05 49.1 3.7 63 186-252 32-94 (275)
141 KOG0105 Alternative splicing f 85.7 1.8 3.9E-05 44.4 6.1 69 185-263 115-185 (241)
142 KOG2135 Proteins containing th 85.4 0.71 1.5E-05 53.1 3.5 76 184-269 371-447 (526)
143 PF08675 RNA_bind: RNA binding 84.7 3.8 8.3E-05 37.1 7.0 57 184-251 7-63 (87)
144 KOG2071 mRNA cleavage and poly 82.4 2.5 5.3E-05 50.3 6.3 103 449-567 7-110 (579)
145 KOG4574 RNA-binding protein (c 82.3 1.1 2.3E-05 54.8 3.3 76 186-270 299-376 (1007)
146 KOG4285 Mitotic phosphoprotein 82.3 4.3 9.3E-05 44.6 7.5 64 185-259 197-260 (350)
147 PF03467 Smg4_UPF3: Smg-4/UPF3 79.6 4.8 0.0001 41.2 6.6 87 184-271 6-101 (176)
148 KOG1847 mRNA splicing factor [ 77.9 1.2 2.5E-05 52.9 1.8 55 325-382 419-473 (878)
149 KOG4307 RNA binding protein RB 74.1 2.2 4.7E-05 51.3 2.6 76 184-263 433-509 (944)
150 PF07576 BRAP2: BRCA1-associat 73.9 21 0.00046 33.9 8.8 78 186-268 14-95 (110)
151 KOG2253 U1 snRNP complex, subu 73.7 4.5 9.8E-05 48.5 5.1 71 182-264 37-107 (668)
152 PF03880 DbpA: DbpA RNA bindin 72.3 16 0.00034 31.9 7.0 67 187-265 2-74 (74)
153 KOG1365 RNA-binding protein Fu 71.0 12 0.00025 42.5 7.1 60 186-249 162-225 (508)
154 PF11767 SET_assoc: Histone ly 69.9 19 0.0004 31.2 6.7 55 196-262 11-65 (66)
155 PF10309 DUF2414: Protein of u 69.5 16 0.00035 31.3 6.1 54 185-250 5-62 (62)
156 KOG2318 Uncharacterized conser 64.8 15 0.00032 43.8 6.6 80 184-264 173-304 (650)
157 KOG4660 Protein Mei2, essentia 60.4 14 0.00031 43.7 5.6 82 185-269 388-474 (549)
158 KOG4210 Nuclear localization s 57.4 6.7 0.00015 43.3 2.2 82 184-268 87-168 (285)
159 KOG4019 Calcineurin-mediated s 52.0 37 0.0008 35.1 6.2 76 185-269 10-91 (193)
160 KOG2193 IGF-II mRNA-binding pr 51.7 3.3 7.2E-05 47.2 -1.3 74 185-264 80-153 (584)
161 PF01417 ENTH: ENTH domain; I 48.1 36 0.00078 32.5 5.4 98 461-565 20-118 (125)
162 KOG2591 c-Mpl binding protein, 48.0 31 0.00066 41.0 5.6 71 182-262 172-246 (684)
163 PF00790 VHS: VHS domain; Int 46.7 68 0.0015 31.4 7.2 82 476-570 37-120 (140)
164 KOG4454 RNA binding protein (R 45.6 5.2 0.00011 42.2 -0.9 68 182-253 77-148 (267)
165 KOG0965 Predicted RNA-binding 43.8 4.5 9.7E-05 49.1 -1.9 60 327-386 527-586 (988)
166 PF02042 RWP-RK: RWP-RK domain 43.7 30 0.00065 28.7 3.4 30 626-655 13-42 (52)
167 KOG0804 Cytoplasmic Zn-finger 43.1 49 0.0011 38.5 6.1 68 185-257 74-142 (493)
168 smart00288 VHS Domain present 35.0 52 0.0011 32.0 4.2 80 477-569 33-112 (133)
169 cd03561 VHS VHS domain family; 32.7 1.1E+02 0.0024 29.6 6.1 77 476-569 32-113 (133)
170 PF07498 Rho_N: Rho terminatio 31.7 65 0.0014 25.3 3.5 34 636-669 1-36 (43)
171 smart00540 LEM in nuclear memb 28.2 1E+02 0.0022 24.7 4.0 35 637-671 3-41 (44)
172 PF10567 Nab6_mRNP_bdg: RNA-re 27.6 86 0.0019 34.8 4.7 84 182-265 12-105 (309)
173 KOG2891 Surface glycoprotein [ 26.7 18 0.0004 39.3 -0.5 69 186-254 150-246 (445)
174 cd03567 VHS_GGA VHS domain fam 26.2 86 0.0019 31.0 4.1 82 478-568 35-116 (139)
175 COG0724 RNA-binding proteins ( 24.4 77 0.0017 32.2 3.6 37 182-218 222-258 (306)
176 cd03568 VHS_STAM VHS domain fa 22.4 2.5E+02 0.0054 27.9 6.6 80 476-569 32-111 (144)
177 KOG4676 Splicing factor, argin 22.3 19 0.0004 41.1 -1.5 63 186-256 152-214 (479)
178 KOG4410 5-formyltetrahydrofola 21.5 1.1E+02 0.0024 33.8 4.0 54 181-242 326-379 (396)
No 1
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=100.00 E-value=2.9e-140 Score=1175.69 Aligned_cols=754 Identities=50% Similarity=0.776 Sum_probs=673.8
Q ss_pred CCCcCccccCCchhhchHHHHHhccccHHHHHHHHHHHHHhhcCCCCCCCCceeeccccCCCCc-ccc-ccCCCCCCCcc
Q 003204 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDSGPGSKAFVRGGTIDPNDK-LKE-AEGEKSKDGVS 78 (839)
Q Consensus 1 ~~~~~~~~kks~f~k~ke~~E~Kkk~ee~eaA~vy~eFv~sF~~~~~~~~~~fvr~g~~~~~~~-~~~-~~~~~~~~~~~ 78 (839)
|.+|++..++.++.++||.+++|||+.+.+||++|.+||++|...+..+.|+||+|||++|+.. ... ..++
T Consensus 3 ~~~f~i~~~s~p~~~~re~e~~kkK~~~~~~a~~~~ef~~~f~~~~~~~~k~fv~~gtina~~~r~~~d~~~~------- 75 (877)
T KOG0151|consen 3 LDAFSIGSVSKPKLSKRENEEEKKKEDAGAAARYYQEFVENFPKGDNVGSKTFVEAGTINAAKARRKLDEKGG------- 75 (877)
T ss_pred ccccccccccccchhhhhhHhhhcccchhhHHHHHHHHHHhccCCCCccceeeeeccccccccccccchhhcc-------
Confidence 5789999999999999999999999999999999999999998666667899999999999773 222 2221
Q ss_pred ccCCCCCCCCCCCCCccccCCCChhhhhhccCccccccCchhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCC
Q 003204 79 VPKKGSRYVPSFIPPPLAAKGKDSERKKEEERPREKDRGKSRNIDNFMEELKHEQEMRERRNQEREHWRDGRHTESSAPS 158 (839)
Q Consensus 79 ~~~~g~~y~~~~~p~~~~~k~~~~~~k~~~~k~k~~~k~K~r~ld~F~eElk~~Qeere~r~~~r~~~~~G~~~~~~t~~ 158 (839)
+.++.++|++.+++......++.+. ..+|.+.++|++||+.|+|||+++||+||+|++.+.+. -...+.++++
T Consensus 76 --k~k~~~~p~~~~~~~~~~~~~~kk~---~~kk~~~k~K~snle~FkeELkr~QE~Re~R~~~r~~~--~~~~~d~~~s 148 (877)
T KOG0151|consen 76 --KKKSTEVPSFVEPPTRLLVKDPKKG---PLKKKQEKKKKSNLELFKEELKRIQEEREERHKDRHHL--EDPQSDSAVS 148 (877)
T ss_pred --cccCCCCCCcCCCcchhcccCCCCC---cchhhhcccchhhHHHHHHHHHHHHHHHHHHhhhhhcc--cccccCcchh
Confidence 3367789998888776655444333 34455677889999999999999999999999998865 2233456788
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeC
Q 003204 159 SRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFM 238 (839)
Q Consensus 159 sr~~~~p~~~~~~~~~~gs~d~~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~ 238 (839)
++++.+|..+++.+. +|++|++||.+||||||||+|.|+|+.|...|++||+|.+|+|||||++.+..+.+.||||.||
T Consensus 149 ~r~~~~p~~~~~s~~-~gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafm 227 (877)
T KOG0151|consen 149 SRFDPLPSRFDPSGR-PGSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFM 227 (877)
T ss_pred hccCCCccccCCCCC-CCcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeeh
Confidence 999999998888775 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCCEECCeEEEEEeecCCCCCCCCCCCCCCCcccccccCCCccccCCCCCCCCcCCCCCCcccccCCC
Q 003204 239 NRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTTVPSQNSELVLTPN 318 (839)
Q Consensus 239 ~~~dAe~Al~~lnG~~i~Gr~IkV~~ak~~~~p~~a~~~pp~g~~~~~~~~g~~~~~~gp~~pp~~~~p~~~se~~~~~~ 318 (839)
++.+|++|+..|+|..++++.|+++|||++++|++++|.||++++.....+++...+.+..+| ..+.|+++.+++.+++
T Consensus 228 nR~D~era~k~lqg~iv~~~e~K~gWgk~V~ip~~p~~ipp~~h~~~lp~p~s~Lpfnaqp~p-~~~~pn~N~e~~~~ed 306 (877)
T KOG0151|consen 228 NRADAERALKELQGIIVMEYEMKLGWGKAVPIPNIPIYIPPPLHEATLPPPPSNLPFNAQPGP-PKSLPNQNAELVNTED 306 (877)
T ss_pred hhhhHHHHHHHhcceeeeeeeeeeccccccccCCccccCCChhhhccCCCCccCCcccCCCCc-cccCCCccccccCcCC
Confidence 999999999999999999999999999999999999999999999888888888888877666 6688999999999999
Q ss_pred CCceeccCCCchhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCcccccccCCCCCcceeeEEEeeeccCCccccccCCc
Q 003204 319 VPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEP 398 (839)
Q Consensus 319 ~~~v~v~~P~D~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~Np~F~FL~d~~s~~h~YYrwrl~s~~~gd~~~~w~~~p 398 (839)
+..+.|++|+|.+++.+||+||+||+++|++||+|||+++.+||+|+|||+.+++.|+||+||||||+|||++..|+++|
T Consensus 307 v~~i~Vvip~d~~L~~vidrM~~fV~~egp~fea~im~re~~nplF~flfen~s~~htyyrwklySilQgdT~~ewr~e~ 386 (877)
T KOG0151|consen 307 VEDILVVIPTDRHLLMVIDRMAEFVVREGPMFEAMIMERERGNPLFSFLFENGSPAHTYYRWKLYSILQGDTPQEWRTEP 386 (877)
T ss_pred ccceeEecCchHHHHHHHHHHHHHHhccCccHHHHHHHhhccChhHHHHHhcCchHHHHHHHHHHHHHcCCCHHHhhhhh
Confidence 98899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCccccCCCCCCCCCcchhhhcccccccCcCcCcCcCCCCCHHHHHHHHHHHHhhccchHHHHHHHHHHhhcccc
Q 003204 399 FIMITGSGRWIPPALPTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADA 478 (839)
Q Consensus 399 f~m~~~g~~w~PP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~~l~~lL~~Lt~tr~sI~~~m~w~l~ha~~ 478 (839)
|+||+||++|+||+++.....++.++..++++.+. .+.++.|+..+|++|++||+.|||.|.+|+++|.|||+|+++
T Consensus 387 frmfknggrwipppin~~~~~mp~ee~~~t~a~~e---~~~k~~Ltd~qRdklE~liR~LTpEk~sIg~aM~FalenA~a 463 (877)
T KOG0151|consen 387 FRMFKNGGRWIPPPINNYRKGMPEEEERSTDAEGE---SEDKGALTDLQRDKLEDLIRGLTPEKSSIGDAMVFALENADA 463 (877)
T ss_pred hhhcccCceecCCCCCcccccCchhhhcccccccc---hhhhcccchHHHHHHHHHHHhcCcccchHHHHHHHHHhhhhh
Confidence 99999999999999998765554444445565443 346789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCcccceeeeeeeehhcccCCCCCCChhhhHHHHHHhhHHHHHHHHHHhhhhccccchHHHHHH
Q 003204 479 AGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKER 558 (839)
Q Consensus 479 a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhNs~~~v~na~~yR~~fe~~Lp~IF~~l~~~y~~~~~ri~ae~~k~k 558 (839)
|.|||+||+++|++.+|++++||+||||||||||||+++|.|||.||..||..|+.||..|+.+|+++.|||++|.|+++
T Consensus 464 a~EI~eci~eSlt~~~t~~~kKiarLyLvsDIL~N~sarv~nas~YR~~FEa~L~~Ifd~l~~~yr~I~gRIkaE~fkqR 543 (877)
T KOG0151|consen 464 AGEIVECITESLTNKETPLPKKIARLYLVSDILHNSSARVANASAYRKSFEATLEDIFDDLNDLYRSIGGRIKAEAFKQR 543 (877)
T ss_pred HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCccCcHHHHHHHHHHhccCCCCCCcccccccCCCccccccCCCcc--ccCcccCchhHHHhhcchhhHHH
Q 003204 559 VLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVTPFHSICGDAPEIDKKNNSED--TCDLSKTNQDTALAMGKGAAIKE 636 (839)
Q Consensus 559 V~~vL~iWe~~~vfp~~~l~~L~~~fl~~~~s~~~~~~~~~~~~~~~e~~~~~~d--~~dg~~~~~~~~~~~~~~~~~~~ 636 (839)
|++||++|++|.|||.+||.+|+++||| .+++.+++++ |++.+++++.....+ ++||++++ +. .+--+
T Consensus 544 V~kVirvWedW~ifpe~~l~~l~~~Flg-~~~~~~~~~s-e~~~~die~~~~a~~eedldgvple--~~------~agip 613 (877)
T KOG0151|consen 544 VMKVIRVWEDWAIFPEDFLIGLQNTFLG-LNNIVTEKES-EADAPDIENAPLAGNEEDLDGVPLE--DE------DAGIP 613 (877)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhc-CCCCcccccc-cccchhhccCcccCchhhccCCCch--hh------hcCCc
Confidence 9999999999999999999999999999 4556678888 999999998886543 56777665 11 11236
Q ss_pred HhcCChHHHHHHHHHcCcccccChHHHHHHHHhHHHHHHhhcccccchh-hhcccCCCCCCCCCCcccccccccccCCcC
Q 003204 637 LMNLPLSELERRCRHNGLSLVGGREMMVARLLSLEDAEKQRGYELDDDL-KSAHSQSSSGRYSRGWKETNMEAESMGLSG 715 (839)
Q Consensus 637 ~~~~~~~~l~~~c~~~Gl~~~~~~~~~i~rL~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (839)
++..++++|+++| ++++..-+++.+|++++.++..+..|..+|+.+.. +++|+.+ .+-|...+...+++
T Consensus 614 ~~n~pi~eld~~~-l~~dd~ldgipm~~e~~ss~s~~~~~sk~e~vd~~~~~~q~vs-----tskwe~~~~~~~~~---- 683 (877)
T KOG0151|consen 614 LMNTPIDELDGRP-LNLDDDLDGIPMMVETKSSLSDPETPSKWEAVDESFKEGQAVS-----TSKWEHVDDEFEPK---- 683 (877)
T ss_pred cccCchhhhcccc-ccccccccCceeeeeeccccCCCcccccccccCcccccccccc-----hhhhhhcccccccc----
Confidence 7888899999999 99999999999999999999999999999999998 8888873 23488888888877
Q ss_pred CCcchhhhhhhhcCCCcCCCCCccCCcchhhhhhccccCCCcccCCccccccCCchHHhhccCCCCCcccCCCCCCCCCC
Q 003204 716 WNGYEEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDPVLPASKWALEDDESDDEQKRSSRGLGLSYSSSGSENAGD 795 (839)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~w~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 795 (839)
.++|.++++-- .|| || |||.+++++.. ||| |+++.|
T Consensus 684 ~~s~~~~e~ed----------------------------~~~----k~---~de~~~~~~~~-------~ss-~~~~~d- 719 (877)
T KOG0151|consen 684 KNSYDEVEEED----------------------------NPV----KY---DDEDRDKLRDI-------ESS-GSDNQD- 719 (877)
T ss_pred cccccchhccc----------------------------ccc----cc---chhhhHHHhhh-------hhh-cccccc-
Confidence 78888877611 333 99 88999999988 888 999998
Q ss_pred CCCCCCCccccCCCCCcCCCCCCCChHHhhcccceeeeeeecc
Q 003204 796 GPSKADDVDFTIDASIPVQPDSGMNEEQRSDHRLLSFAFLLIE 838 (839)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~r~~~~~~~~~~ 838 (839)
..+.+..+...+++|+.|++..++.++||++|.++||+++|.
T Consensus 720 -~l~sg~~~lk~~~sv~~qpe~~~d~~l~q~~r~~~~a~~e~~ 761 (877)
T KOG0151|consen 720 -ELESGERDLKPGSSVREQPENERDRLLRQDVRVEAIALIEYR 761 (877)
T ss_pred -ccCCCCccCCCCCccccChhhHHHHHHHHHHHHHHHHhhhhh
Confidence 579999999999999999999999999999999999999986
No 2
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=99.88 E-value=9e-23 Score=193.39 Aligned_cols=120 Identities=23% Similarity=0.430 Sum_probs=108.1
Q ss_pred HHHHHHhhccchHHHHHHHHHHhhccccHHHHHHHHHHHhhccCCCcccceeeeeeeehhcccCCCCCCChhhhHHHHHH
Q 003204 451 FEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEA 530 (839)
Q Consensus 451 l~~lL~~Lt~tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhNs~~~v~na~~yR~~fe~ 530 (839)
|+.+|+.|+++|++|+++|.||++|.++|.+||++|.+++... +.++||++|||+|||||||. .+.++.|+..|.+
T Consensus 2 f~~~L~~L~~s~~~I~~lt~~~~~~~~~a~~Iv~~i~~~~~~~--~~~~kL~~LYlindIl~n~~--~~~~~~f~~~~~~ 77 (121)
T smart00582 2 FEQKLESLNNSQESIQTLTKWAIEHASHAKEIVELWEKYIKKA--PPPRKLPLLYLLDSIVQNSK--RKYGSEFGDELGP 77 (121)
T ss_pred hHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CccceehhHHhHHHHHHHHh--hccHHHHHHHHHH
Confidence 7899999999999999999999999999999999999998765 45799999999999999995 4557889999999
Q ss_pred hhHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhhccCccCcHHHHHHHHH
Q 003204 531 TLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRA 582 (839)
Q Consensus 531 ~Lp~IF~~l~~~y~~~~~ri~ae~~k~kV~~vL~iWe~~~vfp~~~l~~L~~ 582 (839)
+++.+|.++.... .+.++++|.+||++|++|.|||+++|.+|+.
T Consensus 78 ~~~~~~~~~~~~~--------~~~~~~ki~kll~iW~~~~iF~~~~i~~L~~ 121 (121)
T smart00582 78 VFQDALRDVLGAA--------NDETKKKIRRLLNIWEERGIFPPSVLRPLRE 121 (121)
T ss_pred HHHHHHHHHHHhC--------CHHHHHHHHHHHHHHhcCCCCCHHHHHHhhC
Confidence 9999888765322 1689999999999999999999999999873
No 3
>KOG2669 consensus Regulator of nuclear mRNA [RNA processing and modification]
Probab=99.74 E-value=4.4e-18 Score=183.33 Aligned_cols=129 Identities=18% Similarity=0.288 Sum_probs=116.4
Q ss_pred CHHHHHHHHHHHHhhccchHHHHHHHHHHhhccccHHHHHHHHHHHhhccCCCcccceeeeeeeehhcccCCCCCCChhh
Q 003204 444 TDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASA 523 (839)
Q Consensus 444 ~~~~r~~l~~lL~~Lt~tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhNs~~~v~na~~ 523 (839)
+....+.|...|..|+.|+++|+.+..|||.|..+|..||++|.+.|.... ..+||.+|||+|||+||| ++.+..
T Consensus 2 ~~fsee~l~~kL~~L~~TQeSIqtlS~Wli~hkk~a~~IV~~Wl~~~~~~~--~~~Kl~llYLaNDVvQns---krk~~e 76 (325)
T KOG2669|consen 2 SAFSEEALEKKLAELSNTQESIQTLSLWLIHHKKHARLIVDVWLKELKKSS--VNHKLTLLYLANDVVQNS---KRKGPE 76 (325)
T ss_pred CcccHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccC--CCceeeehhhhHHHHHHh---hhcCch
Confidence 344567899999999999999999999999999999999999999998774 789999999999999999 678899
Q ss_pred hHHHHHHhhHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhhccCccCcHHHHHHHHHHhc
Q 003204 524 YRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 585 (839)
Q Consensus 524 yR~~fe~~Lp~IF~~l~~~y~~~~~ri~ae~~k~kV~~vL~iWe~~~vfp~~~l~~L~~~fl 585 (839)
|...|..+++..|.|+..- .....+.+|.+||+||++|.||+++++..|+..|.
T Consensus 77 f~~ef~~v~~~a~~~i~~~--------~~~~~k~~l~Rl~nIw~eR~Vf~~~~~~~l~~~l~ 130 (325)
T KOG2669|consen 77 FVDEFWPVVLKAFAHIVEE--------TDVKCKKKLGRLINIWEERNVFSPESLVDLEESLG 130 (325)
T ss_pred hHHHHHHHHHHHHHHHHHh--------cchhhhHHHHHHHHHHHHhccCCHHHHHHHHHHhc
Confidence 9999999999998877633 33456899999999999999999999999999987
No 4
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=99.57 E-value=4.8e-15 Score=139.36 Aligned_cols=108 Identities=24% Similarity=0.491 Sum_probs=89.8
Q ss_pred HHHHHHhh---ccchHHHHHHHHHHhhccccHHHHHHHHHHHhhccCCCcccceeeeeeeehhcccCCCCCCChhhhHHH
Q 003204 451 FEDMLRAL---TLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTK 527 (839)
Q Consensus 451 l~~lL~~L---t~tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhNs~~~v~na~~yR~~ 527 (839)
+...|+.| +.++.+|..++.||++|..+|.+||++|.+.+... +..+||..|||+|||++||. .+ |...
T Consensus 4 ~~~~l~~L~~~~~S~~~I~~lt~~a~~~~~~a~~iv~~i~~~i~~~--~~~~KL~~LYL~dsIvkn~~--~~----~~~~ 75 (114)
T cd03562 4 YNALLEKLTFNKNSQPSIQTLTKLAIENRKHAKEIVEIIEKHIKKC--PPEQKLPLLYLLDSIVKNVG--RK----YKEF 75 (114)
T ss_pred HHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CcccchHHHHHHHHHHHHcc--cc----hHHH
Confidence 45566666 34999999999999999999999999999999665 56999999999999999995 33 6666
Q ss_pred HHHhhHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhhccCccCcH
Q 003204 528 FEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSD 574 (839)
Q Consensus 528 fe~~Lp~IF~~l~~~y~~~~~ri~ae~~k~kV~~vL~iWe~~~vfp~ 574 (839)
|...++.+|. .+|.. ..++.|++|.+||++|+++.+|+.
T Consensus 76 ~~~~~~~~f~---~~~~~-----~~~~~r~kl~rl~~iW~~~~~f~~ 114 (114)
T cd03562 76 FSEFLVPLFL---DAYEK-----VDEKTRKKLERLLNIWEERFVFGS 114 (114)
T ss_pred HHHHHHHHHH---HHHHh-----CCHHHHHHHHHHHHHccCCCCCCC
Confidence 7777777775 34442 358899999999999999999973
No 5
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.56 E-value=4.3e-14 Score=138.75 Aligned_cols=83 Identities=28% Similarity=0.472 Sum_probs=77.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
.+++|||+|||+++|+++|+++|++||.|.+|+|+. +..++++++||||+|.+.++|+.|+..|||..|+|++|+|.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~---d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIV---DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEe---cCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 468999999999999999999999999999999984 67789999999999999999999999999999999999999
Q ss_pred eecCCC
Q 003204 264 WGKSVA 269 (839)
Q Consensus 264 ~ak~~~ 269 (839)
|++..+
T Consensus 110 ~a~~~~ 115 (144)
T PLN03134 110 PANDRP 115 (144)
T ss_pred eCCcCC
Confidence 987653
No 6
>PF01805 Surp: Surp module; InterPro: IPR000061 SWAP is derived from the Suppressor-of-White-APricot splicing regulator from Drosophila melanogaster. The domain is found in regulators responsible for pervasive, nonsex-specific alternative pre-mRNA splicing characteristics and has been found in splicing regulatory proteins []. These ancient, conserved SWAP proteins share a colinearly arrayed series of novel sequence motifs [].; GO: 0003723 RNA binding, 0006396 RNA processing; PDB: 2E5Z_A 2DT7_B 2DT6_A 1UG0_A 1X4P_A 2E60_A 1X4O_A 4DGW_B.
Probab=99.50 E-value=3e-15 Score=123.29 Aligned_cols=54 Identities=46% Similarity=0.838 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhcCCCCcccccccCCCCCcceeeEEEeee
Q 003204 332 LRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSF 385 (839)
Q Consensus 332 ~~~~Idk~a~~V~~~G~~FE~~l~~re~~Np~F~FL~d~~s~~h~YYrwrl~s~ 385 (839)
++.+|+++|.||+++|+.||++||+++.+||+|+||++.+||+|.||+|+|+++
T Consensus 1 ~~~~I~~tA~~Va~~G~~fE~~l~~~~~~np~F~FL~~~~~~~~~yY~~~l~~y 54 (55)
T PF01805_consen 1 LREIIDKTAEFVAKNGPEFEEKLRERERNNPQFNFLFPSDSPYHAYYRWKLAEY 54 (55)
T ss_dssp HHHHHHHHHHHHHHCSHHHHHHHHHHTTTSGGGGGGSTTSSTHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHhcCCCCCCcCcCCCCCCCchHHHHHHHHh
Confidence 367999999999999999999999999999999999977799999999999764
No 7
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1.8e-13 Score=142.33 Aligned_cols=137 Identities=23% Similarity=0.476 Sum_probs=107.2
Q ss_pred cccCchhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCccEEE
Q 003204 114 KDRGKSRNIDNFMEELKHEQEMRERRNQEREHWRDGRHTESSAPSSRFDELPDDFDPSGKLPGSF----DDGDPQTTNLY 189 (839)
Q Consensus 114 ~~k~K~r~ld~F~eElk~~Qeere~r~~~r~~~~~G~~~~~~t~~sr~~~~p~~~~~~~~~~gs~----d~~dp~~ttLf 189 (839)
..|+|..+|.+|-.....+.+...+ -..|..+|.+.++.+..+... .++. +-++ ....+++|+||
T Consensus 100 T~KsKGYgFVSf~~k~dAEnAI~~M----nGqWlG~R~IRTNWATRKp~e------~n~~-~ltfdeV~NQssp~NtsVY 168 (321)
T KOG0148|consen 100 TGKSKGYGFVSFPNKEDAENAIQQM----NGQWLGRRTIRTNWATRKPSE------MNGK-PLTFDEVYNQSSPDNTSVY 168 (321)
T ss_pred CCcccceeEEeccchHHHHHHHHHh----CCeeeccceeeccccccCccc------cCCC-CccHHHHhccCCCCCceEE
Confidence 4567889999997666665555444 344555666666554443321 1211 2222 24677899999
Q ss_pred EcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEeecCCC
Q 003204 190 VGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 269 (839)
Q Consensus 190 VgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ak~~~ 269 (839)
|||++..+||+.|+++|+.||+|.+|+|. +.+||+||.|.+.+.|..||..|||..|.|+.+++.|+|...
T Consensus 169 ~G~I~~~lte~~mr~~Fs~fG~I~EVRvF---------k~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 169 VGNIASGLTEDLMRQTFSPFGPIQEVRVF---------KDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred eCCcCccccHHHHHHhcccCCcceEEEEe---------cccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 99999999999999999999999999999 468999999999999999999999999999999999999876
Q ss_pred C
Q 003204 270 L 270 (839)
Q Consensus 270 ~ 270 (839)
.
T Consensus 240 ~ 240 (321)
T KOG0148|consen 240 D 240 (321)
T ss_pred C
Confidence 3
No 8
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=99.44 E-value=1.3e-13 Score=154.71 Aligned_cols=133 Identities=20% Similarity=0.368 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHhh--ccchHHHHHHHHHHhhcccc---HHHHHHHHHHHhhccCCCcccceeeeeeeehhcccCCCCCC
Q 003204 445 DSQRDEFEDMLRAL--TLERSQIKEAMGFALDNADA---AGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVK 519 (839)
Q Consensus 445 ~~~r~~l~~lL~~L--t~tr~sI~~~m~w~l~ha~~---a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhNs~~~v~ 519 (839)
.++.+.|+.+|+.+ |||++-|..++.|+.+++++ ++-|+..|...++....-+..+||+||||||+||||. ++
T Consensus 100 ~l~~~~~~~~l~~~~~~c~kd~is~~k~w~f~~~~s~~~~e~~~~~l~n~~~~~~~~~~lrlh~~ylind~~~hcq--rk 177 (757)
T KOG4368|consen 100 QLDMNEFDNLLQPIIDTCTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQ--RK 177 (757)
T ss_pred cCCHHHHHHHHHHHHHHHhHHHHHHhhhhhhhcCCCchHHHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHH--HH
Confidence 34678899999988 89999999999999999996 7788888899998888889999999999999999994 78
Q ss_pred ChhhhHHHHHHhhHHHHHHHHHHhhhhccccch-HHHHHHHHHHHHhhccCccCcHHHHHHHHHHhccCC
Q 003204 520 NASAYRTKFEATLPDIMESFNDLYRSITGRITA-EALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSG 588 (839)
Q Consensus 520 na~~yR~~fe~~Lp~IF~~l~~~y~~~~~ri~a-e~~k~kV~~vL~iWe~~~vfp~~~l~~L~~~fl~~~ 588 (839)
.+-.....++.++..|+|. +-+.. |.-.+++.+||..||.+.||...++..|+++.++..
T Consensus 178 ~~~~~~~~l~~~v~~~yc~---------~~~~~~e~~~~~~~~ll~~we~~~yf~ds~~~ql~~~~~~~~ 238 (757)
T KOG4368|consen 178 QARELLAALQKVVVPIYCT---------SFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLG 238 (757)
T ss_pred HHHHHHHHHHHHhHHHHHh---------hhhhhHhHHHHHHHHHHHHHhhcCchhHHHHHHhhhhhhhhh
Confidence 8888888899888877762 11223 444567899999999999999999999999988754
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.43 E-value=4.9e-13 Score=148.02 Aligned_cols=82 Identities=27% Similarity=0.453 Sum_probs=76.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
.+.+|||+|||+.+++++|+++|++||.|.+|+|++ +..+|+++|||||.|.+.++|.+|+..|||..++|++|+|.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~---d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~ 344 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIR---DLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVS 344 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeE---cCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345899999999999999999999999999999994 67789999999999999999999999999999999999999
Q ss_pred eecCC
Q 003204 264 WGKSV 268 (839)
Q Consensus 264 ~ak~~ 268 (839)
|....
T Consensus 345 ~~~~~ 349 (352)
T TIGR01661 345 FKTNK 349 (352)
T ss_pred EccCC
Confidence 97643
No 10
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.42 E-value=4.3e-13 Score=148.47 Aligned_cols=81 Identities=21% Similarity=0.405 Sum_probs=76.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
.++|||+|||+.+|+++|+++|++||+|.+|+|+. +..+|+++|||||.|.+.++|.+|+..|||..+.|+.|+|.|
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~---d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~ 79 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVR---DKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSY 79 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEE---cCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEe
Confidence 68999999999999999999999999999999994 667889999999999999999999999999999999999999
Q ss_pred ecCC
Q 003204 265 GKSV 268 (839)
Q Consensus 265 ak~~ 268 (839)
+++.
T Consensus 80 a~~~ 83 (352)
T TIGR01661 80 ARPS 83 (352)
T ss_pred eccc
Confidence 8754
No 11
>smart00648 SWAP Suppressor-of-White-APricot splicing regulator. domain present in regulators which are responsible for pre-mRNA splicing processes
Probab=99.42 E-value=2.9e-14 Score=117.05 Aligned_cols=52 Identities=38% Similarity=0.655 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCCCCcccccccCCCCCcceeeEEEeeec
Q 003204 334 HVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFA 386 (839)
Q Consensus 334 ~~Idk~a~~V~~~G~~FE~~l~~re~~Np~F~FL~d~~s~~h~YYrwrl~s~~ 386 (839)
.+|++||.||+++|+.||++||+++.+||+|+||++ ++++|.||+|+|+++.
T Consensus 2 ~iI~~tA~~Va~~G~~fe~~l~~~~~~n~~F~FL~~-~~~~h~yy~~~l~~~~ 53 (54)
T smart00648 2 DIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKP-NDPYHAYYRKKLAEYR 53 (54)
T ss_pred cHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCccCCC-CCCCcHHHHHHHHHHh
Confidence 589999999999999999999999999999999986 9999999999998653
No 12
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.40 E-value=1.1e-12 Score=110.57 Aligned_cols=70 Identities=34% Similarity=0.620 Sum_probs=65.9
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 188 LfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
|||+|||+++|+++|+++|++||.|..++++. + .+++.++||||.|.+.++|+.|+..|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~---~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMR---N-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEE---E-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccc---c-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999994 2 5678899999999999999999999999999999986
No 13
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.38 E-value=1.1e-12 Score=145.85 Aligned_cols=85 Identities=28% Similarity=0.452 Sum_probs=79.1
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeE
Q 003204 180 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (839)
Q Consensus 180 ~~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~ 259 (839)
......++|||+|||+++|+++|+++|..||+|.+|+|+ .+..++++++||||+|.+.++|++|+..|||..+.+++
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~---~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~ 178 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIM---RDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKR 178 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---ecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCce
Confidence 345568999999999999999999999999999999999 47778999999999999999999999999999999999
Q ss_pred EEEEeecC
Q 003204 260 LKIGWGKS 267 (839)
Q Consensus 260 IkV~~ak~ 267 (839)
|+|.|+++
T Consensus 179 i~V~~a~p 186 (346)
T TIGR01659 179 LKVSYARP 186 (346)
T ss_pred eeeecccc
Confidence 99999764
No 14
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=6.9e-12 Score=129.31 Aligned_cols=82 Identities=28% Similarity=0.455 Sum_probs=78.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
+.++|-|.||+.+++|.+|+++|.+||.|.+|.+.+ |..||.+||||||.|.++++|.+||..|||.-++.-.|+|.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylar---dK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLAR---DKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEE---ccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 568899999999999999999999999999999994 88999999999999999999999999999999999999999
Q ss_pred eecCC
Q 003204 264 WGKSV 268 (839)
Q Consensus 264 ~ak~~ 268 (839)
|++|.
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99975
No 15
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=9.2e-12 Score=128.03 Aligned_cols=83 Identities=23% Similarity=0.412 Sum_probs=75.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Q 003204 181 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (839)
Q Consensus 181 ~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~I 260 (839)
.|...|+||||+|++.+..+.|+.+|.+||.|.+..|+ +|..+|+++|||||+|.+.++|++|+...| -.|+||+-
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvi---td~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~a 83 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVI---TDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKA 83 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEE---eccCCccccceeeEEeecHHHHHHHhcCCC-Cccccccc
Confidence 45577999999999999999999999999999999999 699999999999999999999999986554 67999998
Q ss_pred EEEeecC
Q 003204 261 KIGWGKS 267 (839)
Q Consensus 261 kV~~ak~ 267 (839)
.|..|.-
T Consensus 84 NcnlA~l 90 (247)
T KOG0149|consen 84 NCNLASL 90 (247)
T ss_pred ccchhhh
Confidence 8887654
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.27 E-value=3.6e-11 Score=133.89 Aligned_cols=84 Identities=26% Similarity=0.433 Sum_probs=77.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECC--eEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE--YELK 261 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~G--r~Ik 261 (839)
..++|||+|||+.+|+++|+++|++||.|..|+|+. +..+|++++||||+|.+.++|++|+..||+..+.| ++|+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~---d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~ 268 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILR---DKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLT 268 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEee---cCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEE
Confidence 457899999999999999999999999999999994 66788999999999999999999999999999876 7999
Q ss_pred EEeecCCCC
Q 003204 262 IGWGKSVAL 270 (839)
Q Consensus 262 V~~ak~~~~ 270 (839)
|.|++....
T Consensus 269 V~~a~~~~~ 277 (346)
T TIGR01659 269 VRLAEEHGK 277 (346)
T ss_pred EEECCcccc
Confidence 999987653
No 17
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=7.4e-12 Score=117.82 Aligned_cols=78 Identities=23% Similarity=0.439 Sum_probs=73.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
.++|||||||+..++|++|.++|+++|+|..|-+- .|..+..+.||+||.|.++++|+.|+.-++|..++.++|+++
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMG---Ldr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMG---LDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEec---cccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 46899999999999999999999999999998766 567777899999999999999999999999999999999999
Q ss_pred e
Q 003204 264 W 264 (839)
Q Consensus 264 ~ 264 (839)
|
T Consensus 112 ~ 112 (153)
T KOG0121|consen 112 W 112 (153)
T ss_pred c
Confidence 9
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.26 E-value=1.5e-11 Score=144.35 Aligned_cols=79 Identities=27% Similarity=0.545 Sum_probs=74.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..++|||||||+.+++++|+++|++||+|.+|+|++ +..+|+++|||||.|.+.++|++|+..|||..++|+.|+|+
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~---D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~ 182 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSW---DPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 182 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEee---cCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeec
Confidence 358999999999999999999999999999999995 67789999999999999999999999999999999999998
Q ss_pred ee
Q 003204 264 WG 265 (839)
Q Consensus 264 ~a 265 (839)
+.
T Consensus 183 rp 184 (612)
T TIGR01645 183 RP 184 (612)
T ss_pred cc
Confidence 63
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.25 E-value=2.5e-11 Score=142.62 Aligned_cols=82 Identities=20% Similarity=0.323 Sum_probs=76.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..++|||+||++++++++|+++|+.||.|.+|+|++ +..+|+++|||||.|.+.++|..|+..|||..|+|+.|+|+
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~---D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~ 279 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLAR---APTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 279 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEe---cCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 457999999999999999999999999999999994 66778899999999999999999999999999999999999
Q ss_pred eecCC
Q 003204 264 WGKSV 268 (839)
Q Consensus 264 ~ak~~ 268 (839)
|+...
T Consensus 280 kAi~p 284 (612)
T TIGR01645 280 KCVTP 284 (612)
T ss_pred ecCCC
Confidence 98764
No 20
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.25 E-value=2.9e-11 Score=127.93 Aligned_cols=80 Identities=20% Similarity=0.289 Sum_probs=71.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
.++|||||||+.+|+++|+++|+.||.|.+|.|+. +. ..+|||||+|.+.++|+.|+ .|||..|.|+.|+|.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~---d~---~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQS---EN---ERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee---cC---CCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEe
Confidence 57999999999999999999999999999999984 32 24689999999999999999 6999999999999999
Q ss_pred ecCCCCC
Q 003204 265 GKSVALP 271 (839)
Q Consensus 265 ak~~~~p 271 (839)
+.....|
T Consensus 77 a~~~~~p 83 (260)
T PLN03120 77 AEDYQLP 83 (260)
T ss_pred ccCCCCC
Confidence 7765443
No 21
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=3.6e-11 Score=127.00 Aligned_cols=83 Identities=18% Similarity=0.412 Sum_probs=78.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..+||||+-|+++++|..|+..|.+||+|..|.|+ .+..||+++|||||+|++..+...|.+..+|.+|+|+.|-|+
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV---~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLV---RDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEe---eecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 47999999999999999999999999999999999 488999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 003204 264 WGKSVA 269 (839)
Q Consensus 264 ~ak~~~ 269 (839)
+-+-..
T Consensus 177 vERgRT 182 (335)
T KOG0113|consen 177 VERGRT 182 (335)
T ss_pred eccccc
Confidence 876654
No 22
>PF04818 CTD_bind: RNA polymerase II-binding domain.; InterPro: IPR006903 This entry represents a conserved region found in a number of uncharacterised eukaryotic proteins.; PDB: 2L0I_A 2KM4_A 3D9I_B 3D9N_B 3D9O_A 3D9P_B 3D9K_A 3D9M_A 3D9J_A 3D9L_A ....
Probab=99.23 E-value=1.1e-12 Score=111.29 Aligned_cols=64 Identities=30% Similarity=0.588 Sum_probs=55.0
Q ss_pred ceeeeeeeehhcccCCCCCCChhhhHHHHHHhhHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhhccCccCc
Q 003204 500 KVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFS 573 (839)
Q Consensus 500 KLa~LYLinDILhNs~~~v~na~~yR~~fe~~Lp~IF~~l~~~y~~~~~ri~ae~~k~kV~~vL~iWe~~~vfp 573 (839)
||++|||+||||||| +.++.+.|...|+++||.+|.++. +. ..++.+++|.+||++|+++.||+
T Consensus 1 KL~~lYl~ndI~q~s--k~k~~~~f~~~F~~~l~~~~~~~~---~~-----~~~~~~~kv~rll~iW~~r~if~ 64 (64)
T PF04818_consen 1 KLALLYLANDILQNS--KRKNPDEFAPAFSPVLPDAFAHAY---KN-----VDPEVRKKVQRLLNIWEERNIFS 64 (64)
T ss_dssp HHHHHHHHHHHHHHH--HHHTTHCHHHHHHCCHHHHHHHHC---CC-----S-HHHHHHHHHHHHHHHHCTSS-
T ss_pred CcceeehHHHHHHHh--hhcChHHHHHHHHHHHHHHHHHHH---hc-----CCHHHHHHHHHHHHHhhCCCCCC
Confidence 789999999999999 456888999999999999999753 22 26789999999999999999996
No 23
>PLN03213 repressor of silencing 3; Provisional
Probab=99.22 E-value=3e-11 Score=133.76 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=71.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCH--HHHHHHHHHhCCCEECCeEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNR--ADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~--~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
.+.+||||||++.|++++|+.+|+.||.|.+|.|++ ++| ||||||.|.+. .++.+||..|||..|+|+.|+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR-----ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR-----TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec-----ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 468999999999999999999999999999999982 455 89999999987 789999999999999999999
Q ss_pred EEeecCC
Q 003204 262 IGWGKSV 268 (839)
Q Consensus 262 V~~ak~~ 268 (839)
|.-|++.
T Consensus 82 VNKAKP~ 88 (759)
T PLN03213 82 LEKAKEH 88 (759)
T ss_pred EeeccHH
Confidence 9998864
No 24
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=2.4e-11 Score=119.96 Aligned_cols=78 Identities=24% Similarity=0.442 Sum_probs=72.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
-.|.||||||+..+++.+|..+|..||+|.+|-|-. .+.|||||+|.+..||+.|+..|||..|+|..|+|.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--------nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE 80 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--------NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVE 80 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--------cCCCceEEeccCcccHHHHHhhcCCccccCceEEEE
Confidence 368999999999999999999999999999998873 578999999999999999999999999999999999
Q ss_pred eecCCC
Q 003204 264 WGKSVA 269 (839)
Q Consensus 264 ~ak~~~ 269 (839)
.+.-.+
T Consensus 81 ~S~G~~ 86 (195)
T KOG0107|consen 81 LSTGRP 86 (195)
T ss_pred eecCCc
Confidence 877654
No 25
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.21 E-value=2.6e-11 Score=122.26 Aligned_cols=82 Identities=29% Similarity=0.442 Sum_probs=78.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
.++|-|-||.+.++.++|+.+|.+||.|..|.|.| |..|+.++|||||-|....+|+.|+++|||.+++|+.|+|.+
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPr---dr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPR---DRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceeccc---ccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 58899999999999999999999999999999997 778899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 003204 265 GKSVA 269 (839)
Q Consensus 265 ak~~~ 269 (839)
|+...
T Consensus 90 arygr 94 (256)
T KOG4207|consen 90 ARYGR 94 (256)
T ss_pred hhcCC
Confidence 88764
No 26
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.20 E-value=7.4e-11 Score=100.45 Aligned_cols=70 Identities=29% Similarity=0.569 Sum_probs=63.0
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 188 LfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
|||+|||+++++++|+++|+.||.|..|++.. +.. |..+++|||.|.+.++|.+|+..++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~---~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIK---NKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEE---STT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEe---eec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999994 334 78899999999999999999999999999999885
No 27
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=5.5e-11 Score=126.92 Aligned_cols=80 Identities=28% Similarity=0.466 Sum_probs=73.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
...|+|+|+|+..-+.||+.+|++||.|.+|.|+. .++| +||||||+|++.+||++|-.+|+|.++.||+|.|..
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIf----NERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIF----NERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEe----ccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 46899999999999999999999999999999995 3343 799999999999999999999999999999999999
Q ss_pred ecCCC
Q 003204 265 GKSVA 269 (839)
Q Consensus 265 ak~~~ 269 (839)
|.+.-
T Consensus 171 ATarV 175 (376)
T KOG0125|consen 171 ATARV 175 (376)
T ss_pred cchhh
Confidence 87653
No 28
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.16 E-value=7.2e-11 Score=139.50 Aligned_cols=79 Identities=34% Similarity=0.579 Sum_probs=74.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEee
Q 003204 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~a 265 (839)
++|||||||+++||++|.++|++||.|.+|+|++ |..+++++|||||.|.+.++|++|+..+|+..+.|+.|+|.|+
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~---d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s 77 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCR---DSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWS 77 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecc
Confidence 4799999999999999999999999999999994 6778899999999999999999999999999999999999996
Q ss_pred cC
Q 003204 266 KS 267 (839)
Q Consensus 266 k~ 267 (839)
..
T Consensus 78 ~~ 79 (562)
T TIGR01628 78 QR 79 (562)
T ss_pred cc
Confidence 53
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.16 E-value=9.2e-11 Score=134.81 Aligned_cols=83 Identities=29% Similarity=0.541 Sum_probs=77.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
+..++|||+|||+.+|+++|.++|+.||.|..|+|+. +..+|+++|||||.|.+.++|..|+..|||..|.|++|+|
T Consensus 184 p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~---d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v 260 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHR---DPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKV 260 (457)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEE---cCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEE
Confidence 3478999999999999999999999999999999994 6677899999999999999999999999999999999999
Q ss_pred EeecCC
Q 003204 263 GWGKSV 268 (839)
Q Consensus 263 ~~ak~~ 268 (839)
.|+...
T Consensus 261 ~~a~~~ 266 (457)
T TIGR01622 261 GYAQDS 266 (457)
T ss_pred EEccCC
Confidence 998843
No 30
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.15 E-value=1.2e-10 Score=137.75 Aligned_cols=82 Identities=33% Similarity=0.485 Sum_probs=76.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
....++|||+||++.+|+++|+++|++||.|.+|+|+. + .+|+++|||||+|.+.++|.+|+..|||..++|++|+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~---d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~ 357 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML---D-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLY 357 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE---C-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeE
Confidence 34578999999999999999999999999999999994 3 6789999999999999999999999999999999999
Q ss_pred EEeecC
Q 003204 262 IGWGKS 267 (839)
Q Consensus 262 V~~ak~ 267 (839)
|.|+..
T Consensus 358 V~~a~~ 363 (562)
T TIGR01628 358 VALAQR 363 (562)
T ss_pred EEeccC
Confidence 999975
No 31
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.11 E-value=3.2e-10 Score=131.98 Aligned_cols=83 Identities=14% Similarity=0.277 Sum_probs=77.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..++|||||||+.+|+++|.++|+.||.|..+.|+ .+..+|.++|||||+|.+.++|..|+..|||..|+|+.|+|.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~ 370 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLI---KDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQ 370 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE---ecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 45799999999999999999999999999999998 366789999999999999999999999999999999999999
Q ss_pred eecCCC
Q 003204 264 WGKSVA 269 (839)
Q Consensus 264 ~ak~~~ 269 (839)
|+....
T Consensus 371 ~a~~~~ 376 (509)
T TIGR01642 371 RACVGA 376 (509)
T ss_pred ECccCC
Confidence 987543
No 32
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=4.8e-11 Score=121.12 Aligned_cols=85 Identities=31% Similarity=0.516 Sum_probs=80.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
...+||||+|...|||..|...|-.||.|..|+|. .|-++++.||||||+|...++|..||..||+..+.||.|+|.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiP---lDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIP---LDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccc---cchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 46799999999999999999999999999999998 588899999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 003204 264 WGKSVALP 271 (839)
Q Consensus 264 ~ak~~~~p 271 (839)
+|+|..+.
T Consensus 86 ~AkP~kik 93 (298)
T KOG0111|consen 86 LAKPEKIK 93 (298)
T ss_pred ecCCcccc
Confidence 99988753
No 33
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.2e-10 Score=121.57 Aligned_cols=82 Identities=26% Similarity=0.574 Sum_probs=77.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
.-.+|||-|.+.++-+.|++.|.+||.|..+||++ |..|++++|||||.|-+.++|++||..|||..|++|.|+-.|
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvir---D~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIR---DMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW 138 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEee---cccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence 35799999999999999999999999999999995 888999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 003204 265 GKSVA 269 (839)
Q Consensus 265 ak~~~ 269 (839)
|...+
T Consensus 139 ATRKp 143 (321)
T KOG0148|consen 139 ATRKP 143 (321)
T ss_pred cccCc
Confidence 87653
No 34
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.09 E-value=2.4e-10 Score=134.14 Aligned_cols=78 Identities=19% Similarity=0.374 Sum_probs=71.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEEC-CeEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY-EYELKI 262 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~-Gr~IkV 262 (839)
..|+|||+|||++++|++|+++|++||.|.+|+|++ | .+|+++|||||.|.+.++|++|+..|||..+. |+.|.|
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~---D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V 132 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMM---D-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV 132 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEE---C-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc
Confidence 469999999999999999999999999999999994 5 68899999999999999999999999999985 787777
Q ss_pred Eee
Q 003204 263 GWG 265 (839)
Q Consensus 263 ~~a 265 (839)
.++
T Consensus 133 ~~S 135 (578)
T TIGR01648 133 CIS 135 (578)
T ss_pred ccc
Confidence 653
No 35
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.09 E-value=4.3e-10 Score=130.76 Aligned_cols=81 Identities=20% Similarity=0.322 Sum_probs=74.0
Q ss_pred CCCccEEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Q 003204 182 DPQTTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (839)
Q Consensus 182 dp~~ttLfVgNLp~-~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~I 260 (839)
.+.+++|||+||++ .+|+++|+++|+.||.|.+|+|+. + .+|||||+|.+.++|..|+..|||..|.|++|
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~---~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l 343 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMK---N-----KKETALIEMADPYQAQLALTHLNGVKLFGKPL 343 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEe---C-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceE
Confidence 45678999999998 699999999999999999999994 1 36999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 003204 261 KIGWGKSVAL 270 (839)
Q Consensus 261 kV~~ak~~~~ 270 (839)
+|.+++...+
T Consensus 344 ~v~~s~~~~~ 353 (481)
T TIGR01649 344 RVCPSKQQNV 353 (481)
T ss_pred EEEEcccccc
Confidence 9999987654
No 36
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.08 E-value=3.6e-10 Score=116.63 Aligned_cols=80 Identities=28% Similarity=0.505 Sum_probs=75.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
.++|||||||+.+|+++|..+|..||.|..|.|.. +..+|+.+|||||.|.+.++|..|+..++|..+.|++|+|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~---d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVR---DRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeee---ccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeec
Confidence 68999999999999999999999999999999985 557899999999999999999999999999999999999999
Q ss_pred ecC
Q 003204 265 GKS 267 (839)
Q Consensus 265 ak~ 267 (839)
+..
T Consensus 192 ~~~ 194 (306)
T COG0724 192 AQP 194 (306)
T ss_pred ccc
Confidence 764
No 37
>smart00362 RRM_2 RNA recognition motif.
Probab=99.08 E-value=6.3e-10 Score=92.23 Aligned_cols=72 Identities=35% Similarity=0.595 Sum_probs=65.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 187 tLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
+|||+|||+.+++++|+++|.+||.|..+++++ +. +.++++|||.|.+.++|.+|+..++|..+.|+.|+|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~---~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPK---DT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEec---CC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999999999999999984 22 5678999999999999999999999999999998873
No 38
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.08 E-value=3.2e-10 Score=117.61 Aligned_cols=86 Identities=23% Similarity=0.434 Sum_probs=80.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Q 003204 181 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (839)
Q Consensus 181 ~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~I 260 (839)
.+...|||.|.-||.++|+++|+.+|+..|.|.+||+++ |.-+|.+-|||||.|.+.+||++|+..|||..+..+.|
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvR---DKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTI 113 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVR---DKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTI 113 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeee---ccccccccccceeeecChHHHHHHHhhhcceeeccceE
Confidence 455679999999999999999999999999999999996 88899999999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 003204 261 KIGWGKSVA 269 (839)
Q Consensus 261 kV~~ak~~~ 269 (839)
+|+||++.+
T Consensus 114 KVSyARPSs 122 (360)
T KOG0145|consen 114 KVSYARPSS 122 (360)
T ss_pred EEEeccCCh
Confidence 999998653
No 39
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.06 E-value=7.9e-10 Score=115.55 Aligned_cols=75 Identities=23% Similarity=0.298 Sum_probs=67.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
+.+.+|||+||++.+|+++|+++|+.||.|.+|+|++ + +..++||||+|.+..+++.|+ .|+|..|.+++|.|
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~---D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~I 75 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIR---S---GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCI 75 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEec---C---CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEE
Confidence 3468999999999999999999999999999999994 3 344589999999999999998 89999999999998
Q ss_pred Ee
Q 003204 263 GW 264 (839)
Q Consensus 263 ~~ 264 (839)
.-
T Consensus 76 t~ 77 (243)
T PLN03121 76 TR 77 (243)
T ss_pred Ee
Confidence 74
No 40
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=4.4e-11 Score=118.64 Aligned_cols=82 Identities=15% Similarity=0.438 Sum_probs=76.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
.+.-|||||||+..||.+|.-.|++||.|+.|.+++ |..||+++||||.+|.+..+.--|+..|||..|.||.|+|+
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiR---Dk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIR---DKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEe---cCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 467899999999999999999999999999999996 88999999999999999999999999999999999999999
Q ss_pred eecCC
Q 003204 264 WGKSV 268 (839)
Q Consensus 264 ~ak~~ 268 (839)
.-...
T Consensus 111 Hv~~Y 115 (219)
T KOG0126|consen 111 HVSNY 115 (219)
T ss_pred ecccc
Confidence 75444
No 41
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.04 E-value=7.1e-10 Score=127.52 Aligned_cols=81 Identities=16% Similarity=0.302 Sum_probs=74.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
....+|||+|||+.+++++|+++|++||.|..|+|+. +..+|+++|||||.|.+.++|.+|+ .|+|..+.|++|.|
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~---d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v 162 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIK---DRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIV 162 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEee---cCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEE
Confidence 3467999999999999999999999999999999994 6678899999999999999999999 69999999999999
Q ss_pred EeecC
Q 003204 263 GWGKS 267 (839)
Q Consensus 263 ~~ak~ 267 (839)
.++..
T Consensus 163 ~~~~~ 167 (457)
T TIGR01622 163 QSSQA 167 (457)
T ss_pred eecch
Confidence 87543
No 42
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.03 E-value=7e-10 Score=130.24 Aligned_cols=74 Identities=32% Similarity=0.534 Sum_probs=69.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccC--CCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRF--GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~f--G~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
.++|||+||++++|+++|+++|++| |.|.+|+++ ++||||+|.+.++|++|+..|||..|+|+.|+|
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V 301 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEV 301 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 5789999999999999999999999 999999887 369999999999999999999999999999999
Q ss_pred EeecCCC
Q 003204 263 GWGKSVA 269 (839)
Q Consensus 263 ~~ak~~~ 269 (839)
.|+++..
T Consensus 302 ~~Akp~~ 308 (578)
T TIGR01648 302 TLAKPVD 308 (578)
T ss_pred EEccCCC
Confidence 9998764
No 43
>smart00360 RRM RNA recognition motif.
Probab=99.01 E-value=1.3e-09 Score=89.97 Aligned_cols=71 Identities=31% Similarity=0.558 Sum_probs=64.8
Q ss_pred EcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 190 VGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 190 VgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
|+|||..+++++|+.+|..||.|..++|.. +..++.++++|||.|.+.++|..|+..+++..+.|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~---~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVR---DKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEe---CCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 689999999999999999999999999984 33467889999999999999999999999999999998873
No 44
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=1.4e-09 Score=120.28 Aligned_cols=82 Identities=22% Similarity=0.369 Sum_probs=76.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEE-CCeE
Q 003204 181 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV-YEYE 259 (839)
Q Consensus 181 ~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i-~Gr~ 259 (839)
..+.+|-||||.||.++.|++|.-+|.+.|.|-.+++| .|+.+|.+||||||+|.+.+.|+.|++.||+..| .|+.
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLM---mD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ 155 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLM---MDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKL 155 (506)
T ss_pred CCCCCceEEecCCCccccchhhHHHHHhccceeeEEEe---ecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCE
Confidence 34678999999999999999999999999999999999 5889999999999999999999999999999998 5899
Q ss_pred EEEEee
Q 003204 260 LKIGWG 265 (839)
Q Consensus 260 IkV~~a 265 (839)
|.|..+
T Consensus 156 igvc~S 161 (506)
T KOG0117|consen 156 LGVCVS 161 (506)
T ss_pred eEEEEe
Confidence 998863
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.97 E-value=1.9e-09 Score=125.38 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=69.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHH--hCCCEECCeEEEE
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDE--MQGVVVYEYELKI 262 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~--lnG~~i~Gr~IkV 262 (839)
+.+|||+|||+.+|+++|.++|+.||.|.+|+|+ +.++||||+|.+.++|.+|+.. +++..+.|++|+|
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~---------~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v 72 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMML---------PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFF 72 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEE---------CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEE
Confidence 5789999999999999999999999999999998 2568999999999999999986 4789999999999
Q ss_pred EeecCCC
Q 003204 263 GWGKSVA 269 (839)
Q Consensus 263 ~~ak~~~ 269 (839)
.|+....
T Consensus 73 ~~s~~~~ 79 (481)
T TIGR01649 73 NYSTSQE 79 (481)
T ss_pred EecCCcc
Confidence 9987653
No 46
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.97 E-value=5.7e-10 Score=111.00 Aligned_cols=79 Identities=25% Similarity=0.481 Sum_probs=73.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
..|||||||+..++++.|.++|-+.|+|..+.|. .|..+...+|||||+|.++++|+-|++-||...+.|++|+|.-
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iP---kDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIP---KDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecc---hhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 4799999999999999999999999999999998 4777888999999999999999999999999999999999987
Q ss_pred ec
Q 003204 265 GK 266 (839)
Q Consensus 265 ak 266 (839)
+-
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 54
No 47
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=4.9e-10 Score=120.55 Aligned_cols=77 Identities=27% Similarity=0.574 Sum_probs=74.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
-|.||||.+++.+.|+.|+..|..||+|++|.+-| |+-|++.+||+||+|.-.+.|.-|++.|||.+++||.|+|+.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSW---Dp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSW---DPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeeccc---ccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 48999999999999999999999999999999999 888999999999999999999999999999999999999983
No 48
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.96 E-value=4e-09 Score=87.87 Aligned_cols=74 Identities=30% Similarity=0.589 Sum_probs=66.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 187 tLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
+|||+|||+.+++++|..+|..||.|..+.+.+.. . +.++++|||.|.+.++|..|+..+++..+.|+.+.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~---~-~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK---D-TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC---C-CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999998522 2 25689999999999999999999999999999999875
No 49
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.96 E-value=1.2e-09 Score=124.10 Aligned_cols=81 Identities=21% Similarity=0.502 Sum_probs=77.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEee
Q 003204 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~a 265 (839)
+.+||||+|++++++.|..+|+..|.|.++++++ |..+|+.+||||++|.+.++|..|++.|||..+.|++|+|.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~---D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVY---DRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecc---cccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecc
Confidence 8999999999999999999999999999999995 8889999999999999999999999999999999999999998
Q ss_pred cCCC
Q 003204 266 KSVA 269 (839)
Q Consensus 266 k~~~ 269 (839)
....
T Consensus 96 ~~~~ 99 (435)
T KOG0108|consen 96 SNRK 99 (435)
T ss_pred cccc
Confidence 7654
No 50
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=98.96 E-value=2.1e-09 Score=104.57 Aligned_cols=131 Identities=24% Similarity=0.358 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHhhccccHHHHHHHHHHHhhccCCCcccceeeeeeeehhcccCCCCC-CChhhh
Q 003204 446 SQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPV-KNASAY 524 (839)
Q Consensus 446 ~~r~~l~~lL~~Lt~tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhNs~~~v-~na~~y 524 (839)
+.|.+|..+|++||.++.||++|..|+|+|.+.++++.+||.+.|-.. .+..|++++|+|-= |+.++... .....|
T Consensus 5 E~r~~F~~~L~~L~aS~qSi~kaa~fAlk~~~~~edL~~cIle~le~~--~lN~R~nI~~fID~-l~e~~~~~~~~~~~Y 81 (139)
T PF12243_consen 5 EVRMQFTQLLRRLNASQQSIQKAAQFALKNRDMEEDLWSCILEQLEKE--NLNTRINIFYFIDS-LCESSQKSKKYNYPY 81 (139)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHccccHHHHHHHHHHHHhcc--chhhHHHHHHHHHH-HHHHHHhcccccchh
Confidence 468899999999999999999999999999999999999999999777 58999999999955 66655332 246889
Q ss_pred HHHHHHhhHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhhccCccCcHHHHHHHHHHhc
Q 003204 525 RTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 585 (839)
Q Consensus 525 R~~fe~~Lp~IF~~l~~~y~~~~~ri~ae~~k~kV~~vL~iWe~~~vfp~~~l~~L~~~fl 585 (839)
...++..||.|..... ..++..+ ...+.|.+||+.|..+.+++.+.+..+...+.
T Consensus 82 v~~l~~dL~~Iv~~V~-----P~~~~g~-~N~~~~~kvL~~~~~k~~l~~~~~~~~~~~l~ 136 (139)
T PF12243_consen 82 VSMLQRDLPRIVDAVA-----PPDNSGA-ANLKSVRKVLKNWSKKKILDPEEYEEIEASLK 136 (139)
T ss_pred HHHHHHHHHHHHHHhC-----CCCCccc-hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 9999999999887543 2333333 56789999999999999999999998877653
No 51
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=3e-09 Score=97.12 Aligned_cols=75 Identities=24% Similarity=0.402 Sum_probs=69.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
.+.-|||.|||+.+|.++..++|++||+|..|+|-. +...+|.|||.|.+..+|.+|+..|+|..++++-+.|.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~------~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN------TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecC------ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 356799999999999999999999999999999973 23458999999999999999999999999999999998
Q ss_pred e
Q 003204 264 W 264 (839)
Q Consensus 264 ~ 264 (839)
+
T Consensus 91 y 91 (124)
T KOG0114|consen 91 Y 91 (124)
T ss_pred e
Confidence 7
No 52
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=1.5e-09 Score=108.00 Aligned_cols=79 Identities=20% Similarity=0.324 Sum_probs=71.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..++|||||||+++-+.+|..+|.+||.|..|.+..++ ....||||.|++..+|+.||..-||..++|+.|+|.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~------g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVE 78 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP------GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVE 78 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC------CCCCeeEEEecCccchhhhhhcccccccCcceEEEE
Confidence 46899999999999999999999999999999886322 356899999999999999999999999999999999
Q ss_pred eecCC
Q 003204 264 WGKSV 268 (839)
Q Consensus 264 ~ak~~ 268 (839)
|++..
T Consensus 79 fprgg 83 (241)
T KOG0105|consen 79 FPRGG 83 (241)
T ss_pred eccCC
Confidence 96654
No 53
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=2.1e-09 Score=115.57 Aligned_cols=84 Identities=24% Similarity=0.450 Sum_probs=79.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
|+-.-|||..|+|.+|.++|.-+|++||+|.+|.|++ |..||-+-.||||+|.+.+++++|.-.|++..|+.++|+|
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIR---D~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIR---DRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEe---cccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 4457899999999999999999999999999999996 7789999999999999999999999999999999999999
Q ss_pred EeecCCC
Q 003204 263 GWGKSVA 269 (839)
Q Consensus 263 ~~ak~~~ 269 (839)
+|+.+++
T Consensus 314 DFSQSVs 320 (479)
T KOG0415|consen 314 DFSQSVS 320 (479)
T ss_pred ehhhhhh
Confidence 9988875
No 54
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=2e-09 Score=102.44 Aligned_cols=83 Identities=14% Similarity=0.309 Sum_probs=78.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
.+.-|||.++.+.+||+++...|..||.|+.+.+- .|..||..+||++|+|.+.+.|+.|+.+|||..+.|.+|.|+
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLN---LDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLN---LDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeec---cccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 46789999999999999999999999999999887 588899999999999999999999999999999999999999
Q ss_pred eecCCC
Q 003204 264 WGKSVA 269 (839)
Q Consensus 264 ~ak~~~ 269 (839)
|+...+
T Consensus 148 w~Fv~g 153 (170)
T KOG0130|consen 148 WCFVKG 153 (170)
T ss_pred EEEecC
Confidence 998653
No 55
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=2.2e-09 Score=118.65 Aligned_cols=74 Identities=31% Similarity=0.442 Sum_probs=69.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
-.-|||.||+.+|||+.|+.+|++||.|..|+.+ |-||||.|.++++|.+||+.|||+.|+|..|.|.+
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-----------rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtL 327 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-----------RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTL 327 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecc-----------cceeEEeecchHHHHHHHHHhcCceecCceEEEEe
Confidence 3579999999999999999999999999999987 34999999999999999999999999999999999
Q ss_pred ecCCC
Q 003204 265 GKSVA 269 (839)
Q Consensus 265 ak~~~ 269 (839)
||++.
T Consensus 328 AKP~~ 332 (506)
T KOG0117|consen 328 AKPVD 332 (506)
T ss_pred cCChh
Confidence 99985
No 56
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.88 E-value=1.1e-08 Score=83.87 Aligned_cols=56 Identities=29% Similarity=0.561 Sum_probs=50.3
Q ss_pred HHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEee
Q 003204 202 LLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (839)
Q Consensus 202 L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~a 265 (839)
|..+|++||.|.+|.+.. ..+++|||+|.+.++|..|+..|||..++|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~--------~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFK--------KKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEET--------TSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEe--------CCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 678999999999999983 11599999999999999999999999999999999996
No 57
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=8.3e-09 Score=107.29 Aligned_cols=79 Identities=27% Similarity=0.480 Sum_probs=74.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
....|||-||.++++|.-|.++|+.||.|..|||++ |-.+.+.+|||||.+.+.++|..||..|||..++++.|.|.
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvir---D~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVs 353 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIR---DFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 353 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEe---cCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEE
Confidence 467899999999999999999999999999999995 66778899999999999999999999999999999999999
Q ss_pred ee
Q 003204 264 WG 265 (839)
Q Consensus 264 ~a 265 (839)
|-
T Consensus 354 FK 355 (360)
T KOG0145|consen 354 FK 355 (360)
T ss_pred Ee
Confidence 84
No 58
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.85 E-value=2.6e-09 Score=106.34 Aligned_cols=83 Identities=30% Similarity=0.536 Sum_probs=76.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEE-EEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASV-KIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sV-kI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
.+.+||||||.+.++|..|..+|+.||.|.+. +||+ ++.||.+++||||.|.+.+.+.+|+..|||..++.++|.|
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~r---d~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv 171 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMR---DPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITV 171 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccc---cccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEE
Confidence 35899999999999999999999999998765 8885 7889999999999999999999999999999999999999
Q ss_pred EeecCCC
Q 003204 263 GWGKSVA 269 (839)
Q Consensus 263 ~~ak~~~ 269 (839)
.+++...
T Consensus 172 ~ya~k~~ 178 (203)
T KOG0131|consen 172 SYAFKKD 178 (203)
T ss_pred EEEEecC
Confidence 9988654
No 59
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.84 E-value=8e-09 Score=111.44 Aligned_cols=77 Identities=31% Similarity=0.668 Sum_probs=69.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHH-hCCCEECCeEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDE-MQGVVVYEYEL 260 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~-lnG~~i~Gr~I 260 (839)
|...++||||+|...++|.+|+.+|.+||.|.+|.|+. .++||||.|.++.+|+.|... +|..+|+|++|
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~---------~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP---------RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec---------ccccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 44678999999999999999999999999999999992 467999999999999998766 56667899999
Q ss_pred EEEeecC
Q 003204 261 KIGWGKS 267 (839)
Q Consensus 261 kV~~ak~ 267 (839)
+|.||++
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999987
No 60
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.83 E-value=2.6e-09 Score=111.31 Aligned_cols=86 Identities=28% Similarity=0.446 Sum_probs=79.4
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeE
Q 003204 180 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (839)
Q Consensus 180 ~~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~ 259 (839)
...|++|||||-.||.+..+.+|..+|-.||.|.+.|+. .|+.|..+++||||.|.+..+++.||.+|||..|+-++
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVF---vDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKR 356 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVF---VDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR 356 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeee---ehhccccccceeeEecCCchhHHHHHHHhcchhhhhhh
Confidence 356789999999999999999999999999999999998 47788899999999999999999999999999999999
Q ss_pred EEEEeecCC
Q 003204 260 LKIGWGKSV 268 (839)
Q Consensus 260 IkV~~ak~~ 268 (839)
|+|..-++.
T Consensus 357 LKVQLKRPk 365 (371)
T KOG0146|consen 357 LKVQLKRPK 365 (371)
T ss_pred hhhhhcCcc
Confidence 999875543
No 61
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.83 E-value=5.2e-09 Score=110.54 Aligned_cols=76 Identities=24% Similarity=0.447 Sum_probs=71.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEee
Q 003204 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~a 265 (839)
..|||||||..+++.+|+.+|.+||+|.+|.|+ |+||||..++...++.||..|+|..|+|..|.|.-+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaS 71 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEAS 71 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----------cccceEEeecccccHHHHhhcccceecceEEEEEec
Confidence 469999999999999999999999999999999 689999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003204 266 KSVALPS 272 (839)
Q Consensus 266 k~~~~p~ 272 (839)
|+.+.++
T Consensus 72 ksKsk~s 78 (346)
T KOG0109|consen 72 KSKSKAS 78 (346)
T ss_pred cccCCCc
Confidence 8875443
No 62
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=1.2e-08 Score=115.08 Aligned_cols=85 Identities=20% Similarity=0.353 Sum_probs=75.6
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHh-----CC-C
Q 003204 180 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEM-----QG-V 253 (839)
Q Consensus 180 ~~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~l-----nG-~ 253 (839)
+......+|||.|||+++||++|.++|++||.|..+.|+ .++.||+++|+|||.|.+..+|..||... .| .
T Consensus 287 en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV---~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ 363 (678)
T KOG0127|consen 287 ENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV---KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSV 363 (678)
T ss_pred ccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE---eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceE
Confidence 344456899999999999999999999999999999999 68899999999999999999999999776 34 6
Q ss_pred EECCeEEEEEeecC
Q 003204 254 VVYEYELKIGWGKS 267 (839)
Q Consensus 254 ~i~Gr~IkV~~ak~ 267 (839)
.++||.|+|..|-.
T Consensus 364 ll~GR~Lkv~~Av~ 377 (678)
T KOG0127|consen 364 LLDGRLLKVTLAVT 377 (678)
T ss_pred EEeccEEeeeeccc
Confidence 78999999987543
No 63
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=4.2e-09 Score=116.04 Aligned_cols=82 Identities=28% Similarity=0.446 Sum_probs=73.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCE-ECC--eEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV-VYE--YEL 260 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~-i~G--r~I 260 (839)
...+||||-|+..+||.+++++|++||.|.+|.|++ ..-|.+||||||.|.+++.|..||++|||.. +.| .+|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilr----d~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PL 198 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILR----DPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPL 198 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhhee----cccccccceeEEEEehHHHHHHHHHhhccceeeccCCCce
Confidence 357899999999999999999999999999999995 3356899999999999999999999999976 555 689
Q ss_pred EEEeecCCC
Q 003204 261 KIGWGKSVA 269 (839)
Q Consensus 261 kV~~ak~~~ 269 (839)
.|.||....
T Consensus 199 VVkFADtqk 207 (510)
T KOG0144|consen 199 VVKFADTQK 207 (510)
T ss_pred EEEecccCC
Confidence 999998764
No 64
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.78 E-value=9.4e-09 Score=119.77 Aligned_cols=76 Identities=29% Similarity=0.583 Sum_probs=71.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
++|||||+|+.+|+|.+|..+|+.||.|.+|.++ .+|+||||++..+.+|++|+.+|+...+.++.|+|.|
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li---------~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI---------PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeec---------cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 6899999999999999999999999999999998 4679999999999999999999999999999999999
Q ss_pred ecCCC
Q 003204 265 GKSVA 269 (839)
Q Consensus 265 ak~~~ 269 (839)
|..-.
T Consensus 492 a~g~G 496 (894)
T KOG0132|consen 492 AVGKG 496 (894)
T ss_pred eccCC
Confidence 97543
No 65
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=1.2e-08 Score=112.39 Aligned_cols=89 Identities=16% Similarity=0.413 Sum_probs=77.4
Q ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCE-E
Q 003204 177 SFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV-V 255 (839)
Q Consensus 177 s~d~~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~-i 255 (839)
..|..|...-+||||.+|...+|.+|+++|.+||.|.+|.|+ .|+.+|.++||+||.|.++++|.+|+.+|+... +
T Consensus 26 ~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~---kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktl 102 (510)
T KOG0144|consen 26 HTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLI---KDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTL 102 (510)
T ss_pred CCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEee---cccccCcccceEEEEeccHHHHHHHHHHhhccccc
Confidence 344556677899999999999999999999999999999999 488899999999999999999999999998765 4
Q ss_pred CC--eEEEEEeecCC
Q 003204 256 YE--YELKIGWGKSV 268 (839)
Q Consensus 256 ~G--r~IkV~~ak~~ 268 (839)
-| .+|.|.+|..-
T Consensus 103 pG~~~pvqvk~Ad~E 117 (510)
T KOG0144|consen 103 PGMHHPVQVKYADGE 117 (510)
T ss_pred CCCCcceeecccchh
Confidence 44 68888887643
No 66
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=2.8e-08 Score=112.20 Aligned_cols=81 Identities=19% Similarity=0.311 Sum_probs=73.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
...|.|.|||+.+.+.+|..+|+.||.|..|.|.+ ...|+.+|||||.|....+|..|+..|||..|+||+|-|+|
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~----k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDW 192 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPR----KKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDW 192 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEccc----CCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEee
Confidence 67899999999999999999999999999999973 23456679999999999999999999999999999999999
Q ss_pred ecCCC
Q 003204 265 GKSVA 269 (839)
Q Consensus 265 ak~~~ 269 (839)
|-+-.
T Consensus 193 AV~Kd 197 (678)
T KOG0127|consen 193 AVDKD 197 (678)
T ss_pred ecccc
Confidence 86543
No 67
>smart00361 RRM_1 RNA recognition motif.
Probab=98.72 E-value=4.2e-08 Score=84.43 Aligned_cols=63 Identities=17% Similarity=0.289 Sum_probs=53.7
Q ss_pred HHHHHHHhc----cCCCeeEEE-EeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 199 ENFLLRTFG----RFGPIASVK-IMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 199 Ee~L~~lF~----~fG~I~sVk-I~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
+++|+++|+ +||.|.+|. |+.|+. ..+++++|||||.|.+.++|.+|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~-~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNV-GYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCC-CCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 664331 112789999999999999999999999999999999986
No 68
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.69 E-value=2e-08 Score=113.83 Aligned_cols=77 Identities=30% Similarity=0.562 Sum_probs=73.0
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEeecC
Q 003204 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 267 (839)
Q Consensus 188 LfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ak~ 267 (839)
||||||.+++++++|+.+|..||.|..|.++ .|.++|+.+|||||+|.+.++|.+|+..|||..|-|+.|+|+....
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~---~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLT---KDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeec---cccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 9999999999999999999999999999998 4778999999999999999999999999999999999999987543
No 69
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.63 E-value=4.1e-08 Score=103.83 Aligned_cols=74 Identities=24% Similarity=0.421 Sum_probs=70.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
.+|+|+||||.+.++.++|+..|.+||+|..++|+ ++|+||.|.-.++|..|++.|||.++.|++|+|.
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq 145 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQ 145 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeee-----------cceeEEEEeeccchHHHHhcccccccccceeeee
Confidence 47899999999999999999999999999999999 5899999999999999999999999999999999
Q ss_pred eecCC
Q 003204 264 WGKSV 268 (839)
Q Consensus 264 ~ak~~ 268 (839)
.+.+.
T Consensus 146 ~stsr 150 (346)
T KOG0109|consen 146 LSTSR 150 (346)
T ss_pred eeccc
Confidence 87654
No 70
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.55 E-value=1.7e-07 Score=109.28 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=70.7
Q ss_pred CCccEEEEcCCCCC----------CCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCC
Q 003204 183 PQTTNLYVGNLSPQ----------VDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG 252 (839)
Q Consensus 183 p~~ttLfVgNLp~~----------vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG 252 (839)
..+..|+|.||... ...++|+++|++||.|.+|+|++|..+..++...|++||.|.+.++|+.|+..|||
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 45678999999632 12357899999999999999997655556677789999999999999999999999
Q ss_pred CEECCeEEEEEee
Q 003204 253 VVVYEYELKIGWG 265 (839)
Q Consensus 253 ~~i~Gr~IkV~~a 265 (839)
..++|+.|.|.|.
T Consensus 487 r~~~gr~v~~~~~ 499 (509)
T TIGR01642 487 RKFNDRVVVAAFY 499 (509)
T ss_pred CEECCeEEEEEEe
Confidence 9999999999984
No 71
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.52 E-value=2.1e-07 Score=96.05 Aligned_cols=78 Identities=28% Similarity=0.486 Sum_probs=72.0
Q ss_pred cEEEEcCCCCCCCHHHHHH----HhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 186 TNLYVGNLSPQVDENFLLR----TFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~L~~----lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
.||||.||+..+.-++|+. +|++||.|..|.... +.+.||-|||.|.+...|-.|+.+|+|..+.|++|+
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k------t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK------TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC------CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3999999999999998887 999999999998873 557899999999999999999999999999999999
Q ss_pred EEeecCCC
Q 003204 262 IGWGKSVA 269 (839)
Q Consensus 262 V~~ak~~~ 269 (839)
|.||+.-+
T Consensus 84 iqyA~s~s 91 (221)
T KOG4206|consen 84 IQYAKSDS 91 (221)
T ss_pred eecccCcc
Confidence 99998764
No 72
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=3.6e-07 Score=102.85 Aligned_cols=75 Identities=24% Similarity=0.466 Sum_probs=68.9
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEeecC
Q 003204 188 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 267 (839)
Q Consensus 188 LfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ak~ 267 (839)
|||-||++.+|...|.++|+.||.|.+||++. + ..| ++|| ||+|.+.+.|.+|+..|||..+.|+.|.|+....
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~---~-~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVAT---D-ENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEE---c-CCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 99999999999999999999999999999993 3 344 8899 9999999999999999999999999999997654
Q ss_pred C
Q 003204 268 V 268 (839)
Q Consensus 268 ~ 268 (839)
.
T Consensus 153 ~ 153 (369)
T KOG0123|consen 153 K 153 (369)
T ss_pred h
Confidence 3
No 73
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.39 E-value=4.5e-07 Score=102.50 Aligned_cols=82 Identities=20% Similarity=0.328 Sum_probs=74.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
..||||++|+..+-..+|+.+|++||.|.-.+|+ ++..+--.++||||++.+..+|.+||..|+...++|+.|-|.-
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVV---TNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVV---TNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeee---ecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 5699999999999999999999999999999999 4444445689999999999999999999999999999999999
Q ss_pred ecCCC
Q 003204 265 GKSVA 269 (839)
Q Consensus 265 ak~~~ 269 (839)
+|.-+
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 88764
No 74
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=8e-07 Score=100.11 Aligned_cols=74 Identities=30% Similarity=0.536 Sum_probs=68.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEee
Q 003204 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~a 265 (839)
..|||| ++|||.+|.+.|+.+|+|.+|++.+ |. | +-|||||.|.+..+|++||..||...+.|++|+|.|+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~---d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s 72 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCR---DA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWS 72 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEee---cC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehh
Confidence 469999 9999999999999999999999995 44 4 8899999999999999999999999999999999996
Q ss_pred cCC
Q 003204 266 KSV 268 (839)
Q Consensus 266 k~~ 268 (839)
..-
T Consensus 73 ~rd 75 (369)
T KOG0123|consen 73 QRD 75 (369)
T ss_pred ccC
Confidence 643
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.36 E-value=3.9e-07 Score=106.09 Aligned_cols=85 Identities=24% Similarity=0.415 Sum_probs=75.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
....|+|+|.|||+..+-.+++.+|+.||.|.+|+|.- -...+-++|||||.|.+..+|.+|+.+|-+..+.||+|.
T Consensus 610 kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPK---K~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLV 686 (725)
T KOG0110|consen 610 KKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPK---KIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLV 686 (725)
T ss_pred ccccceeeeeccchHHHHHHHHHHHhcccceeeeccch---hhcchhhccceeeeccCcHHHHHHHHhhcccceechhhh
Confidence 33468999999999999999999999999999999972 234556799999999999999999999999999999999
Q ss_pred EEeecCCC
Q 003204 262 IGWGKSVA 269 (839)
Q Consensus 262 V~~ak~~~ 269 (839)
+.|++.-.
T Consensus 687 LEwA~~d~ 694 (725)
T KOG0110|consen 687 LEWAKSDN 694 (725)
T ss_pred eehhccch
Confidence 99998653
No 76
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.30 E-value=1.5e-06 Score=94.14 Aligned_cols=88 Identities=15% Similarity=0.247 Sum_probs=76.6
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCee--------EEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHH
Q 003204 178 FDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIA--------SVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDE 249 (839)
Q Consensus 178 ~d~~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~--------sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~ 249 (839)
+..+...+|+|||+|||.++|-+++.++|++||.|. .||+.+ ...|..+|=|.++|..+++++.|+..
T Consensus 127 ~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYr----d~~G~lKGDaLc~y~K~ESVeLA~~i 202 (382)
T KOG1548|consen 127 FNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYR----DNQGKLKGDALCCYIKRESVELAIKI 202 (382)
T ss_pred cCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEe----cCCCCccCceEEEeecccHHHHHHHH
Confidence 333455678999999999999999999999999985 477774 23489999999999999999999999
Q ss_pred hCCCEECCeEEEEEeecCCC
Q 003204 250 MQGVVVYEYELKIGWGKSVA 269 (839)
Q Consensus 250 lnG~~i~Gr~IkV~~ak~~~ 269 (839)
||+..+.|+.|+|..|+-+.
T Consensus 203 lDe~~~rg~~~rVerAkfq~ 222 (382)
T KOG1548|consen 203 LDEDELRGKKLRVERAKFQM 222 (382)
T ss_pred hCcccccCcEEEEehhhhhh
Confidence 99999999999999988653
No 77
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.30 E-value=1.4e-06 Score=101.56 Aligned_cols=80 Identities=26% Similarity=0.360 Sum_probs=69.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccc-cCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEE-RRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~-tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
|.|||.||++.+|.+.|..+|..+|.|.++.|.--+ ++. .-.+.|||||.|.+.++|++|+..|+|.+++|+.|.|.+
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 449999999999999999999999999999887311 111 223559999999999999999999999999999999999
Q ss_pred ec
Q 003204 265 GK 266 (839)
Q Consensus 265 ak 266 (839)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 76
No 78
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.29 E-value=1.7e-06 Score=88.15 Aligned_cols=77 Identities=18% Similarity=0.310 Sum_probs=70.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccC-CCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRF-GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~f-G~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..-+||+.+|..+.+..+..+|.+| |.|..+++-+ +..||.++|||||+|.+.+.|.-|-..||+..++|+-|.|.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsR---nkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSR---NKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeec---ccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 4568999999999999999999988 6777777764 66899999999999999999999999999999999999999
Q ss_pred e
Q 003204 264 W 264 (839)
Q Consensus 264 ~ 264 (839)
+
T Consensus 126 v 126 (214)
T KOG4208|consen 126 V 126 (214)
T ss_pred E
Confidence 8
No 79
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.27 E-value=2.3e-06 Score=94.70 Aligned_cols=76 Identities=18% Similarity=0.281 Sum_probs=70.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHh-ccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 185 TTNLYVGNLSPQVDENFLLRTF-GRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF-~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
...+||.|+|+++..++|+++| .+.|.|..|.++ ....|+.||||.|+|.+++.+++|++.||...+.||+|.|.
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl----~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELL----FDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeee----cccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 4569999999999999999999 589999999998 45689999999999999999999999999999999999996
Q ss_pred e
Q 003204 264 W 264 (839)
Q Consensus 264 ~ 264 (839)
-
T Consensus 120 E 120 (608)
T KOG4212|consen 120 E 120 (608)
T ss_pred c
Confidence 3
No 80
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.24 E-value=3e-06 Score=89.75 Aligned_cols=82 Identities=26% Similarity=0.323 Sum_probs=74.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..+.|+|.|||+.|++++|+++|..||.+..+-+.+ ...|++.|+|-|.|...++|.+|+..++|..++|++|++.
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy----~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHY----DRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeecc----CCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 458999999999999999999999999999998886 4578899999999999999999999999999999999998
Q ss_pred eecCCC
Q 003204 264 WGKSVA 269 (839)
Q Consensus 264 ~ak~~~ 269 (839)
..-...
T Consensus 158 ~i~~~~ 163 (243)
T KOG0533|consen 158 IISSPS 163 (243)
T ss_pred EecCcc
Confidence 765544
No 81
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.23 E-value=1.7e-06 Score=95.83 Aligned_cols=75 Identities=20% Similarity=0.327 Sum_probs=69.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
.++.|+|||.|||.++|.+.|++-|..||.|..+.|| ++|++++ .|.|.+.++|++|+..|||..+.|+.|+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim------e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~ 604 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM------ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIK 604 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhh------ccCCccc--eEEecCHHHHHHHHHHhccCcccCceee
Confidence 4567999999999999999999999999999999998 3566666 7999999999999999999999999999
Q ss_pred EEe
Q 003204 262 IGW 264 (839)
Q Consensus 262 V~~ 264 (839)
|.|
T Consensus 605 V~y 607 (608)
T KOG4212|consen 605 VTY 607 (608)
T ss_pred eee
Confidence 987
No 82
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.23 E-value=2e-06 Score=94.35 Aligned_cols=115 Identities=24% Similarity=0.313 Sum_probs=91.0
Q ss_pred HHHHhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEE
Q 003204 138 RRNQEREHWRDGRHTESSAPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKI 217 (839)
Q Consensus 138 ~r~~~r~~~~~G~~~~~~t~~sr~~~~p~~~~~~~~~~gs~d~~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI 217 (839)
+....+.|..+|+.++...+.++.+..... . ...+..+|||+||+++++.+|+++|.+||.|..+-|
T Consensus 63 ~vl~~~~h~~dgr~ve~k~av~r~~~~~~~---------~----~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~ 129 (311)
T KOG4205|consen 63 AVLNARTHKLDGRSVEPKRAVSREDQTKVG---------R----HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVI 129 (311)
T ss_pred eeecccccccCCccccceeccCcccccccc---------c----ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEE
Confidence 334445556677777766555555333221 0 114678999999999999999999999999999999
Q ss_pred eCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEeecCCC
Q 003204 218 MWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 269 (839)
Q Consensus 218 ~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ak~~~ 269 (839)
| .|..+.+.++||||.|.+++++.+++ ....+.|+|+.+.|..|-+..
T Consensus 130 ~---~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 130 M---YDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAIPKE 177 (311)
T ss_pred e---ecccccccccceeeEeccccccceec-ccceeeecCceeeEeeccchh
Confidence 9 48889999999999999999999986 778889999999999877664
No 83
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.22 E-value=6.2e-06 Score=84.83 Aligned_cols=84 Identities=21% Similarity=0.284 Sum_probs=68.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEEC---CeEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY---EYEL 260 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~---Gr~I 260 (839)
.-.||||++||-+|...+|..+|..|-.-...-|-+ +.......+-+|||+|.++.+|..|+.+|||..++ +..|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~--Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKY--TSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeee--ccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 358999999999999999999998886655554443 22222234579999999999999999999999985 7899
Q ss_pred EEEeecCCC
Q 003204 261 KIGWGKSVA 269 (839)
Q Consensus 261 kV~~ak~~~ 269 (839)
+|.+||+-+
T Consensus 111 hiElAKSNt 119 (284)
T KOG1457|consen 111 HIELAKSNT 119 (284)
T ss_pred EeeehhcCc
Confidence 999999764
No 84
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.15 E-value=1.7e-06 Score=94.83 Aligned_cols=82 Identities=22% Similarity=0.325 Sum_probs=71.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..++||||+|++.++++.|++.|++||.|..|.||+ |..++++++|+||.|.+.+...+++ ...-+.|.|+.|.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~---d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMR---DPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEec---cCCCCCcccccceecCCCcchheee-cccccccCCccccce
Confidence 468999999999999999999999999999999995 7778999999999999988888776 444567889888877
Q ss_pred eecCCC
Q 003204 264 WGKSVA 269 (839)
Q Consensus 264 ~ak~~~ 269 (839)
-+.+..
T Consensus 81 ~av~r~ 86 (311)
T KOG4205|consen 81 RAVSRE 86 (311)
T ss_pred eccCcc
Confidence 666553
No 85
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.06 E-value=6.5e-06 Score=89.40 Aligned_cols=79 Identities=20% Similarity=0.330 Sum_probs=72.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
...|||..+.++.+|++|+..|..||+|.+|++-+ .+..+..+||||++|.+..+...|+..||=..++|.-|+|+-
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr---~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLAR---APTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeec---cCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 56899999999999999999999999999999985 555667899999999999999999999999999999999875
Q ss_pred ec
Q 003204 265 GK 266 (839)
Q Consensus 265 ak 266 (839)
+-
T Consensus 287 ~v 288 (544)
T KOG0124|consen 287 CV 288 (544)
T ss_pred cc
Confidence 43
No 86
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.06 E-value=7.4e-06 Score=86.73 Aligned_cols=83 Identities=16% Similarity=0.236 Sum_probs=75.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
....+.+||||+.+.+|-+++..+|..||.|..|.|. ++..+|.++||+||.|.+.+.++.|+. |||..+.|+.+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~---~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVP---KDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeee---ccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 3456899999999999999999999999999999998 577788899999999999999999996 999999999999
Q ss_pred EEeecCC
Q 003204 262 IGWGKSV 268 (839)
Q Consensus 262 V~~ak~~ 268 (839)
|.|-+-.
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 9986654
No 87
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.01 E-value=2.3e-05 Score=86.64 Aligned_cols=79 Identities=23% Similarity=0.486 Sum_probs=71.5
Q ss_pred ccEEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 185 TTNLYVGNLSPQ-VDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 185 ~ttLfVgNLp~~-vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
++.|.|.||... ||++.|..+|+-||.|.+|+|++ ..+--|.|.|.+...|+-|+..|+|..|.|++|+|.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~--------nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt 368 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILY--------NKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVT 368 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeee--------cCCcceeeeecchhHHHHHHHHhhcceecCceEEEe
Confidence 578999999875 89999999999999999999996 223569999999999999999999999999999999
Q ss_pred eecCCCCC
Q 003204 264 WGKSVALP 271 (839)
Q Consensus 264 ~ak~~~~p 271 (839)
++|+..+.
T Consensus 369 ~SKH~~vq 376 (492)
T KOG1190|consen 369 LSKHTNVQ 376 (492)
T ss_pred eccCcccc
Confidence 99998753
No 88
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.96 E-value=9.4e-06 Score=85.27 Aligned_cols=78 Identities=27% Similarity=0.473 Sum_probs=67.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCE-ECC--eEEE
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV-VYE--YELK 261 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~-i~G--r~Ik 261 (839)
..+||||-|...-.|++++.+|..||.|.+|.+++ ...|.++||+||.|.+..+|..||..|+|.. +-| ..|.
T Consensus 19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlr----g~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLR----GPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred chhhhhhhhcccccHHHHHHHhcccCCcceeEEec----CCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 47899999999999999999999999999999995 3356789999999999999999999999865 333 4566
Q ss_pred EEeec
Q 003204 262 IGWGK 266 (839)
Q Consensus 262 V~~ak 266 (839)
|.|+.
T Consensus 95 VK~AD 99 (371)
T KOG0146|consen 95 VKFAD 99 (371)
T ss_pred EEecc
Confidence 76664
No 89
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.96 E-value=6.2e-06 Score=85.80 Aligned_cols=71 Identities=23% Similarity=0.426 Sum_probs=66.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEee
Q 003204 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~a 265 (839)
..+|||+||+.+.+.+|+.+|..||.|..|.+. .+||||.|.+..+|..|+..+||..+.|-.+.|.|+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~ 70 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHA 70 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----------cccceeccCchhhhhcccchhcCceecceeeeeecc
Confidence 468999999999999999999999999999887 488999999999999999999999999999999997
Q ss_pred cC
Q 003204 266 KS 267 (839)
Q Consensus 266 k~ 267 (839)
+.
T Consensus 71 r~ 72 (216)
T KOG0106|consen 71 RG 72 (216)
T ss_pred cc
Confidence 74
No 90
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.91 E-value=9.9e-06 Score=84.86 Aligned_cols=77 Identities=26% Similarity=0.497 Sum_probs=71.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
.-..||.|-|.-+++.+.|...|.+|-.-...++++ +..||+++|||||.|.+..++.+|+.+|||+.++.++|++.
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviR---dkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIR---DKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccc---cccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 347899999999999999999999999988889884 88899999999999999999999999999999999998875
No 91
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.89 E-value=2.9e-06 Score=97.44 Aligned_cols=59 Identities=24% Similarity=0.421 Sum_probs=54.5
Q ss_pred eeccCCCchhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCcccccccCCCCCcceeeEE
Q 003204 322 IMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWR 381 (839)
Q Consensus 322 v~v~~P~D~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~Np~F~FL~d~~s~~h~YYrwr 381 (839)
+.+..|+...+-.||+++|.||+++|.+||-+|+.++.+||+|.||. +++-.|.||+|-
T Consensus 178 ~~~eLPpt~KlH~IIerTaSFV~~~G~Q~EIvlkaKQ~~N~qFgFL~-fDH~Lnpyykfl 236 (878)
T KOG1847|consen 178 LRQELPPTEKLHQIIERTASFVSKHGGQSEIVLKAKQGDNPQFGFLM-FDHHLNPYYKFL 236 (878)
T ss_pred ccccCCchHHHHHHHHHHHHHHhhcCcceEEEeeeccCCCcccceec-cccccCHHHHHH
Confidence 55667777899999999999999999999999999999999999995 899999999983
No 92
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.77 E-value=3.8e-05 Score=87.46 Aligned_cols=79 Identities=27% Similarity=0.345 Sum_probs=64.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
..+|||.|||+++++.+|.++|..||.|....|.. | . ..++..+||||+|.+...++.|+.+- -..++|+++.|.-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~v-r-~-~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Vee 363 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQV-R-S-PGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEE 363 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEE-e-c-cCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEe
Confidence 45699999999999999999999999999998873 1 1 12334499999999999999998554 6678999999986
Q ss_pred ecC
Q 003204 265 GKS 267 (839)
Q Consensus 265 ak~ 267 (839)
-+.
T Consensus 364 k~~ 366 (419)
T KOG0116|consen 364 KRP 366 (419)
T ss_pred ccc
Confidence 444
No 93
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.76 E-value=1.1e-05 Score=83.01 Aligned_cols=75 Identities=27% Similarity=0.258 Sum_probs=67.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
-.||||+|+...|+|+-|.++|-+.|+|..|.|.. ...+..+ ||||.|.++....-|+..|||..+.+.++.|.+
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~----~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPS----GQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCC----CccCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 47999999999999999999999999999999973 3334555 999999999999999999999999999888875
No 94
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.74 E-value=1.7e-05 Score=90.76 Aligned_cols=71 Identities=27% Similarity=0.386 Sum_probs=64.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
..+.+|+|-|||..|++++|..+|+.||.|..|+.- ...++..||+|.+..+|++|+++|++..+.|+.|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t--------~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET--------PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc--------cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 356799999999999999999999999999996543 24578899999999999999999999999999998
No 95
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.41 E-value=0.00058 Score=74.09 Aligned_cols=81 Identities=20% Similarity=0.387 Sum_probs=61.5
Q ss_pred ccEEEEcCCCCCCCHHH----HH--HHhccCCCeeEEEEeCCCCcc-ccCCcccEEEEEeCCHHHHHHHHHHhCCCEECC
Q 003204 185 TTNLYVGNLSPQVDENF----LL--RTFGRFGPIASVKIMWPRTEE-ERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 257 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~----L~--~lF~~fG~I~sVkI~~pr~d~-~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~G 257 (839)
..-+||-+||+.+..++ |. ++|++||.|..|.|-. ++.. .+-.+.--.||+|.+.++|.+||.+.||..++|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNk-kt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNK-KTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecc-cccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 45689999999886554 43 7899999999987763 1101 111111123999999999999999999999999
Q ss_pred eEEEEEeec
Q 003204 258 YELKIGWGK 266 (839)
Q Consensus 258 r~IkV~~ak 266 (839)
+-|+..||.
T Consensus 193 r~lkatYGT 201 (480)
T COG5175 193 RVLKATYGT 201 (480)
T ss_pred ceEeeecCc
Confidence 999999985
No 96
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.35 E-value=0.00017 Score=74.58 Aligned_cols=67 Identities=22% Similarity=0.367 Sum_probs=56.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV 255 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i 255 (839)
.....||||.||.+++||++|+.+|+.|-....++|.. ......+||.|.+.+.|..||..|+|..|
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-------~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-------RGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-------CCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 34467899999999999999999999998888788861 12346789999999999999999999876
No 97
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.33 E-value=0.0011 Score=61.23 Aligned_cols=81 Identities=11% Similarity=0.165 Sum_probs=67.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcc--CCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEEC----CeE
Q 003204 186 TNLYVGNLSPQVDENFLLRTFGR--FGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY----EYE 259 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~L~~lF~~--fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~----Gr~ 259 (839)
|||-|.|+|...|.++|.+++.. .|...-+.+. .|-.++.+.|||||.|.+...+.+-...++|..|. .+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLP---iDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kv 78 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLP---IDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKV 78 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEee---eeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcE
Confidence 79999999999999999998843 2444444444 57778889999999999999999999999999985 578
Q ss_pred EEEEeecCCC
Q 003204 260 LKIGWGKSVA 269 (839)
Q Consensus 260 IkV~~ak~~~ 269 (839)
+.|.||+-++
T Consensus 79 c~i~yAriQG 88 (97)
T PF04059_consen 79 CEISYARIQG 88 (97)
T ss_pred EEEehhHhhC
Confidence 8999988764
No 98
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.30 E-value=0.00079 Score=60.14 Aligned_cols=67 Identities=24% Similarity=0.363 Sum_probs=48.6
Q ss_pred cEEEEcCCCCCCCHHH----HHHHhccCCC-eeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Q 003204 186 TNLYVGNLSPQVDENF----LLRTFGRFGP-IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~----L~~lF~~fG~-I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~I 260 (839)
+.|||.|||.+.+... |++++.-||. |.+| . .+.|+|.|.+.+.|.+|.+.|+|..+.|+.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI 69 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKI 69 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-----------CCEEEEEeCCHHHHHHHHHhhcccccccceE
Confidence 5799999999988754 6778888865 5443 2 4789999999999999999999999999999
Q ss_pred EEEee
Q 003204 261 KIGWG 265 (839)
Q Consensus 261 kV~~a 265 (839)
.|.|.
T Consensus 70 ~v~~~ 74 (90)
T PF11608_consen 70 SVSFS 74 (90)
T ss_dssp EEESS
T ss_pred EEEEc
Confidence 99985
No 99
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.16 E-value=0.0013 Score=77.98 Aligned_cols=132 Identities=16% Similarity=0.252 Sum_probs=107.2
Q ss_pred HHHHHHHHHHhh----c-cchHHHHHHHHHHhhccccHHHHHHHHHHHhhccCCCcccceeeeeeeehhcccCCC-CCCC
Q 003204 447 QRDEFEDMLRAL----T-LERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSA-PVKN 520 (839)
Q Consensus 447 ~r~~l~~lL~~L----t-~tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhNs~~-~v~n 520 (839)
....|...|..| + .++..|...+..+|+|.+....||..+.+++... +...||..||+|--|+-.+.- -.++
T Consensus 3 ~v~~Fn~eL~SL~DsK~~IS~sKi~~ITkaAikaIk~ykhVVqsVeKfi~kC--kpe~Kl~gLYVIDSIVRqsrhq~~~~ 80 (894)
T KOG0132|consen 3 AVKEFNGELDSLEDSKPGISGSKILKITKAAIKAIKLYKHVVQSVEKFIKKC--KPEYKLPGLYVIDSIVRQSRHQFGKE 80 (894)
T ss_pred HHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CcccccCeeEEehHHHHHHHHhhccc
Confidence 346788888888 2 6888999999999999999999999999998776 478999999999999887752 2335
Q ss_pred hhhhHHHHHHhhHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhhccCccCcHHHHHHHHHHhccCCC
Q 003204 521 ASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGN 589 (839)
Q Consensus 521 a~~yR~~fe~~Lp~IF~~l~~~y~~~~~ri~ae~~k~kV~~vL~iWe~~~vfp~~~l~~L~~~fl~~~~ 589 (839)
-..|-..|...+-.-|+.|. +. ..+.|.++.++|++|...+||-.+.|.-|.++.-+..+
T Consensus 81 kd~F~prf~~n~~~tf~~L~---~c------~~edks~iIrvlNlwqkn~VfK~e~IqpLlDm~~~s~~ 140 (894)
T KOG0132|consen 81 KDVFGPRFSKNFTGTFQNLY---EC------PQEDKSDIIRVLNLWQKNNVFKSEIIQPLLDMADGSGL 140 (894)
T ss_pred ccccCCccchhHHHHHHHHH---hc------CHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHhccCc
Confidence 55666666666666666443 32 34778999999999999999999999999999887766
No 100
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.00 E-value=0.00065 Score=74.75 Aligned_cols=85 Identities=19% Similarity=0.217 Sum_probs=75.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIAS--------VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 253 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~s--------VkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~ 253 (839)
....-+|||-+||..+++.+|.++|.+||.|.. |.|. ++.+|+.+++-|.|+|.+...|+.|+.-++++
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y---~dkeT~~~KGeatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIY---TDKETGAPKGEATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhcc---ccccccCcCCceeeeecChhhhhhhhhhhccc
Confidence 445678999999999999999999999999853 4444 57789999999999999999999999999999
Q ss_pred EECCeEEEEEeecCCC
Q 003204 254 VVYEYELKIGWGKSVA 269 (839)
Q Consensus 254 ~i~Gr~IkV~~ak~~~ 269 (839)
.++|..|+|..+...+
T Consensus 140 df~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 140 DFCGNTIKVSLAERRT 155 (351)
T ss_pred cccCCCchhhhhhhcc
Confidence 9999999998877553
No 101
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.89 E-value=0.0032 Score=65.60 Aligned_cols=79 Identities=22% Similarity=0.471 Sum_probs=69.7
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEEC-Ce
Q 003204 180 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY-EY 258 (839)
Q Consensus 180 ~~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~-Gr 258 (839)
...+.+..||+.|||..++.+.|..+|.+|.....|+++.++ ++.|||+|.+...+..|...++|..|. ..
T Consensus 141 ~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~--------~~iAfve~~~d~~a~~a~~~lq~~~it~~~ 212 (221)
T KOG4206|consen 141 QMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR--------SGIAFVEFLSDRQASAAQQALQGFKITKKN 212 (221)
T ss_pred cCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC--------CceeEEecchhhhhHHHhhhhccceeccCc
Confidence 335667889999999999999999999999999999999533 578999999999999999999999887 88
Q ss_pred EEEEEeec
Q 003204 259 ELKIGWGK 266 (839)
Q Consensus 259 ~IkV~~ak 266 (839)
.|+|.+++
T Consensus 213 ~m~i~~a~ 220 (221)
T KOG4206|consen 213 TMQITFAK 220 (221)
T ss_pred eEEecccC
Confidence 88888765
No 102
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=96.86 E-value=0.00052 Score=78.80 Aligned_cols=80 Identities=15% Similarity=0.277 Sum_probs=73.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
+....++|+-.|+..+++.+|.++|+.+|+|..|.|+ +|..+++++|.|||.|.+......|+ .|.|..+.|.+|.
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI---~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~ 251 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRII---GDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVI 251 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEee---ccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeE
Confidence 3346799999999999999999999999999999999 68888999999999999999999998 9999999999999
Q ss_pred EEee
Q 003204 262 IGWG 265 (839)
Q Consensus 262 V~~a 265 (839)
|...
T Consensus 252 vq~s 255 (549)
T KOG0147|consen 252 VQLS 255 (549)
T ss_pred eccc
Confidence 9754
No 103
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.73 E-value=0.00096 Score=73.00 Aligned_cols=81 Identities=22% Similarity=0.292 Sum_probs=72.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
.+-++|+||+..+++++|..+|..+|.|..|++. +++.++..++||||.|+....+..++.. +...+.|+++.|..
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~---~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLP---TDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccC---CCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3445599999999999999999999999999998 5788999999999999999999999876 88889999999999
Q ss_pred ecCCC
Q 003204 265 GKSVA 269 (839)
Q Consensus 265 ak~~~ 269 (839)
+.+.+
T Consensus 261 ~~~~~ 265 (285)
T KOG4210|consen 261 DEPRP 265 (285)
T ss_pred CCCCc
Confidence 87664
No 104
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.66 E-value=0.0012 Score=76.51 Aligned_cols=81 Identities=14% Similarity=0.327 Sum_probs=74.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
...+|||+||..+++..+.++...||++....++ .+..+|.++||+|..|.+......|+..|||..+++..|.|..
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv---~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLV---KDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheee---cccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 4579999999999999999999999999999888 5777799999999999999999999999999999999999998
Q ss_pred ecCC
Q 003204 265 GKSV 268 (839)
Q Consensus 265 ak~~ 268 (839)
|-..
T Consensus 366 A~~g 369 (500)
T KOG0120|consen 366 AIVG 369 (500)
T ss_pred hhcc
Confidence 7654
No 105
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.35 E-value=0.0032 Score=70.61 Aligned_cols=77 Identities=19% Similarity=0.369 Sum_probs=61.1
Q ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCC---CCccccCC-------cccEEEEEeCCHHHHHHH
Q 003204 177 SFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWP---RTEEERRR-------QRNCGFVAFMNRADGQAA 246 (839)
Q Consensus 177 s~d~~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~p---r~d~~tg~-------~rg~gFV~F~~~~dAe~A 246 (839)
.++.......+|.+-|||.+-.-+-|..+|+.+|.|.+|+|..| ..+..... .+-||||+|...+.|.+|
T Consensus 223 ~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA 302 (484)
T KOG1855|consen 223 EFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKA 302 (484)
T ss_pred CccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHH
Confidence 34445567899999999999888999999999999999999977 32222222 256999999999999999
Q ss_pred HHHhCCC
Q 003204 247 KDEMQGV 253 (839)
Q Consensus 247 l~~lnG~ 253 (839)
...|+..
T Consensus 303 ~e~~~~e 309 (484)
T KOG1855|consen 303 RELLNPE 309 (484)
T ss_pred HHhhchh
Confidence 8766543
No 106
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.35 E-value=0.0022 Score=67.04 Aligned_cols=68 Identities=26% Similarity=0.344 Sum_probs=61.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
..+.|.|-|++-.+.+++|...|..+|.+..+.++ ++++||.|.+..++.+|+..++|..+.|+.|.+
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-----------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-----------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-----------ccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 45789999999999999999999999999554443 589999999999999999999999999999999
No 107
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.26 E-value=0.011 Score=68.69 Aligned_cols=64 Identities=23% Similarity=0.326 Sum_probs=54.9
Q ss_pred HHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 201 FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 201 ~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
+++..+++||.|.+|.|.+|-.+.....+-|+.||.|.+.+++++|+.+|.|..+.|+.+...|
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsY 488 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASY 488 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEe
Confidence 4556689999999999988744455555678889999999999999999999999999998887
No 108
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.06 E-value=0.017 Score=65.96 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=62.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
..-|-+.+||+++|+++|.++|+-|+ |.++.+. ..+|+..|=|||+|.+.++++.|+ ..|...+..+=|.|--
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~-----r~~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP-----RRNGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVFT 82 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe-----ccCCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEEc
Confidence 45677889999999999999999995 6776665 356899999999999999999998 6777777778788765
Q ss_pred ecC
Q 003204 265 GKS 267 (839)
Q Consensus 265 ak~ 267 (839)
+..
T Consensus 83 ~~~ 85 (510)
T KOG4211|consen 83 AGG 85 (510)
T ss_pred cCC
Confidence 543
No 109
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=95.86 E-value=0.017 Score=64.61 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=68.6
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCe-
Q 003204 180 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY- 258 (839)
Q Consensus 180 ~~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr- 258 (839)
..-|.+.+|.+.|+|+.++|++|+.+|..-|-..+..... ++.+.++.+.+.+.+.|-.|+-.|+.+.+++.
T Consensus 409 ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff-------~kd~kmal~q~~sveeA~~ali~~hnh~lgen~ 481 (492)
T KOG1190|consen 409 NIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF-------QKDRKMALPQLESVEEAIQALIDLHNHYLGENH 481 (492)
T ss_pred ccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec-------CCCcceeecccCChhHhhhhccccccccCCCCc
Confidence 3456778999999999999999999999888765554432 35678999999999999999999999988765
Q ss_pred EEEEEeecCC
Q 003204 259 ELKIGWGKSV 268 (839)
Q Consensus 259 ~IkV~~ak~~ 268 (839)
-++|+|+|..
T Consensus 482 hlRvSFSks~ 491 (492)
T KOG1190|consen 482 HLRVSFSKST 491 (492)
T ss_pred eEEEEeeccc
Confidence 8999998853
No 110
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.83 E-value=0.016 Score=70.22 Aligned_cols=81 Identities=26% Similarity=0.404 Sum_probs=71.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECC--eEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE--YELK 261 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~G--r~Ik 261 (839)
.+|.+|||+|.+.+....|...|..||+|..|.+- ...-|++|.|.+...++.|+..|-|..++| ++++
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~---------hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR---------HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeecc---------cCCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 46889999999999999999999999999987765 345799999999999999999999999987 7899
Q ss_pred EEeecCCCCCCC
Q 003204 262 IGWGKSVALPSQ 273 (839)
Q Consensus 262 V~~ak~~~~p~~ 273 (839)
|.|+..+.-+++
T Consensus 525 vdla~~~~~~Pq 536 (975)
T KOG0112|consen 525 VDLASPPGATPQ 536 (975)
T ss_pred cccccCCCCChh
Confidence 999998764433
No 111
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=95.83 E-value=0.023 Score=53.25 Aligned_cols=58 Identities=21% Similarity=0.322 Sum_probs=38.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCC
Q 003204 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG 252 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG 252 (839)
+-|+|.+++..++-++|+++|+.||.|..|.+.. .-.-|||-|.+.+.|+.|+..+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~---------G~~~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR---------GDTEGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T---------T-SEEEEEESS---HHHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC---------CCCEEEEEECCcchHHHHHHHHHh
Confidence 5688999999999999999999999999998872 345789999999999999887653
No 112
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.81 E-value=0.0052 Score=65.03 Aligned_cols=75 Identities=15% Similarity=0.303 Sum_probs=60.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCcc------ccCCccc----EEEEEeCCHHHHHHHHHHhCCC
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEE------ERRRQRN----CGFVAFMNRADGQAAKDEMQGV 253 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~------~tg~~rg----~gFV~F~~~~dAe~Al~~lnG~ 253 (839)
.+--||++|+||.+...-|+++|+.||.|-.|.+-. -.+. ..|..++ =|+|+|.+...|.+....|||.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqp-E~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQP-EDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecc-hhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 345799999999999999999999999999998873 2221 0122222 2889999999999999999999
Q ss_pred EECCeE
Q 003204 254 VVYEYE 259 (839)
Q Consensus 254 ~i~Gr~ 259 (839)
.|+|+.
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999975
No 113
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.78 E-value=0.0029 Score=76.30 Aligned_cols=95 Identities=25% Similarity=0.386 Sum_probs=76.8
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeE
Q 003204 180 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (839)
Q Consensus 180 ~~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~ 259 (839)
++...+.|||+|||+..+++.+|+..|..+|.|.+|.|-.|+ -+...-||||.|.+...+-.|+-.+.+..|....
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~----~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~ 442 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH----IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGT 442 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC----CCcccchhhhhhhccccCcccchhhcCCccccCc
Confidence 344567899999999999999999999999999999998654 2344578999999999999999999999988778
Q ss_pred EEEEeecCCCCCCCCCCCC
Q 003204 260 LKIGWGKSVALPSQALPAP 278 (839)
Q Consensus 260 IkV~~ak~~~~p~~a~~~p 278 (839)
++++++.+...+.+.+...
T Consensus 443 ~r~glG~~kst~ttr~~sg 461 (975)
T KOG0112|consen 443 HRIGLGQPKSTPTTRLQSG 461 (975)
T ss_pred ccccccccccccceeeccC
Confidence 8888885433344444333
No 114
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.57 E-value=0.025 Score=65.07 Aligned_cols=74 Identities=23% Similarity=0.399 Sum_probs=55.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccC--Cccc---EEEEEeCCHHHHHHHHHHhCCCEECCeE
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERR--RQRN---CGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg--~~rg---~gFV~F~~~~dAe~Al~~lnG~~i~Gr~ 259 (839)
...||||+||++++|+.|...|..||+ +.+-||++....+ .++| |+|..|.++.++..-+.++-- +...
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs---~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~ 332 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGS---VKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGN 332 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccc---eEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccc
Confidence 568999999999999999999999997 4577886554433 3466 999999999988876655432 4444
Q ss_pred EEEEe
Q 003204 260 LKIGW 264 (839)
Q Consensus 260 IkV~~ 264 (839)
+++..
T Consensus 333 ~yf~v 337 (520)
T KOG0129|consen 333 YYFKV 337 (520)
T ss_pred eEEEE
Confidence 44443
No 115
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.52 E-value=0.17 Score=56.24 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=71.9
Q ss_pred CCCCccEEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeE
Q 003204 181 GDPQTTNLYVGNLSPQ-VDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (839)
Q Consensus 181 ~dp~~ttLfVgNLp~~-vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~ 259 (839)
+...++-+-|-+|... +.-+.|..+|..||.|..|+.|. ...|.|.|++.+....++|+..||+..+.|.+
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmk--------Tk~gtamVemgd~~aver~v~hLnn~~lfG~k 354 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMK--------TKPGTAMVEMGDAYAVERAVTHLNNIPLFGGK 354 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEee--------cccceeEEEcCcHHHHHHHHHHhccCccccce
Confidence 4456788999999985 67789999999999999999994 23478999999999999999999999999999
Q ss_pred EEEEeecCCCC
Q 003204 260 LKIGWGKSVAL 270 (839)
Q Consensus 260 IkV~~ak~~~~ 270 (839)
|.|.++|...+
T Consensus 355 l~v~~SkQ~~v 365 (494)
T KOG1456|consen 355 LNVCVSKQNFV 365 (494)
T ss_pred EEEeecccccc
Confidence 99999886653
No 116
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.47 E-value=0.027 Score=46.29 Aligned_cols=52 Identities=25% Similarity=0.453 Sum_probs=42.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHH
Q 003204 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 247 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al 247 (839)
+.|-|.+.++...+..|. .|..||.|..+.+- ....+.+|.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl~-~F~~fGeI~~~~~~---------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLE-HFASFGEIVDIYVP---------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHH-HHHhcCCEEEEEcC---------CCCcEEEEEECCHHHHHhhC
Confidence 567888998887766555 88899999998775 24678999999999999985
No 117
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.41 E-value=0.059 Score=59.82 Aligned_cols=77 Identities=21% Similarity=0.262 Sum_probs=63.4
Q ss_pred ccEEEEcCCC--CCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEEC-C-eEE
Q 003204 185 TTNLYVGNLS--PQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY-E-YEL 260 (839)
Q Consensus 185 ~ttLfVgNLp--~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~-G-r~I 260 (839)
+.-|.+.=|+ +-+|-+.|..+....|.|.+|.|+. +.---|.|+|.+.+.|++|..+|||..|. | ..|
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk--------kngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTL 191 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK--------KNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTL 191 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEe--------ccceeeEEeechhHHHHHHHhhcccccccccceeE
Confidence 3445555444 5689999999999999999999993 23346999999999999999999999975 3 799
Q ss_pred EEEeecCCC
Q 003204 261 KIGWGKSVA 269 (839)
Q Consensus 261 kV~~ak~~~ 269 (839)
+|.|||+..
T Consensus 192 KIeyAkP~r 200 (494)
T KOG1456|consen 192 KIEYAKPTR 200 (494)
T ss_pred EEEecCcce
Confidence 999999864
No 118
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=95.05 E-value=0.027 Score=42.36 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=28.7
Q ss_pred hcCChHHHHHHHHHcCcccccChHHHHHHHHhH
Q 003204 638 MNLPLSELERRCRHNGLSLVGGREMMVARLLSL 670 (839)
Q Consensus 638 ~~~~~~~l~~~c~~~Gl~~~~~~~~~i~rL~~~ 670 (839)
..|...+|...|+..||...|++.+||+||..+
T Consensus 2 ~~l~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~ 34 (35)
T PF02037_consen 2 SKLTVAELKEELKERGLSTSGKKAELIERLKEH 34 (35)
T ss_dssp TTSHHHHHHHHHHHTTS-STSSHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHCCCCCCCCHHHHHHHHHHh
Confidence 456779999999999999999999999999754
No 119
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.88 E-value=0.09 Score=48.97 Aligned_cols=79 Identities=20% Similarity=0.191 Sum_probs=51.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCcc-----ccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeE
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEE-----ERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~-----~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~ 259 (839)
.+.|.|-+.|+. .-..+.++|++||.|.+..-+. +... ......++-.|.|.++.+|.+|| .-||..+.|.-
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~-~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVL-RSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSL 82 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG-----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeeccc-ccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcE
Confidence 466888899998 4556667899999998764110 0000 00134578899999999999998 88999999854
Q ss_pred -EEEEeec
Q 003204 260 -LKIGWGK 266 (839)
Q Consensus 260 -IkV~~ak 266 (839)
+-|.|.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4466653
No 120
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=94.82 E-value=0.074 Score=59.42 Aligned_cols=77 Identities=17% Similarity=0.291 Sum_probs=60.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 187 tLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
-|-|.||.|.+|-+++..||+-.|.|..++++..-.+-.-......|||.|.+...+..|- .|.+.++-++-|.|--
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 7899999999999999999999999999999831212122233456799999999999884 7777887777766643
No 121
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.68 E-value=0.023 Score=62.29 Aligned_cols=75 Identities=15% Similarity=0.175 Sum_probs=63.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCC--eeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGP--IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~--I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
...+|||||-|.+|.++|.+.....|- +..+|+.- ++.+|.++|||+|...+.....+.++.|--+.|+|..-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFE---NR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFE---NRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhh---cccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 467999999999999999988877665 67778873 5567899999999999999999999999999999975443
No 122
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=94.58 E-value=0.095 Score=57.86 Aligned_cols=73 Identities=16% Similarity=0.255 Sum_probs=58.9
Q ss_pred ccEEEEcCCCC----CCC-------HHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 003204 185 TTNLYVGNLSP----QVD-------ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 253 (839)
Q Consensus 185 ~ttLfVgNLp~----~vt-------Ee~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~ 253 (839)
.++|-+.|+=. ..+ .++|.+-..+||.|.+|.|. + ..+.|.+-|.|.+.++|..|+..|+|.
T Consensus 265 ~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~----d---~hPdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 265 DRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY----D---RHPDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred CcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe----c---cCCCceeEEEeCChHHHHHHHHHhcCe
Confidence 46777877632 223 35667778999999999887 1 256799999999999999999999999
Q ss_pred EECCeEEEEEe
Q 003204 254 VVYEYELKIGW 264 (839)
Q Consensus 254 ~i~Gr~IkV~~ 264 (839)
.++||.|....
T Consensus 338 ~fdgRql~A~i 348 (382)
T KOG1548|consen 338 WFDGRQLTASI 348 (382)
T ss_pred eecceEEEEEE
Confidence 99999998764
No 123
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.29 E-value=0.086 Score=60.86 Aligned_cols=63 Identities=22% Similarity=0.287 Sum_probs=57.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhc-cCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHH
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFG-RFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDE 249 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~-~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~ 249 (839)
...|||||+||.-++.++|..+|. -||.|..|-|= +|++-+.++|-|-|+|.+..+--+||.+
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGID---tD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGID---TDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEec---cCcccCCCCCcceeeecccHHHHHHHhh
Confidence 468999999999999999999997 79999999997 6878889999999999999999999854
No 124
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=94.29 E-value=0.063 Score=40.22 Aligned_cols=33 Identities=36% Similarity=0.534 Sum_probs=29.8
Q ss_pred hcCChHHHHHHHHHcCcccccChHHHHHHHHhH
Q 003204 638 MNLPLSELERRCRHNGLSLVGGREMMVARLLSL 670 (839)
Q Consensus 638 ~~~~~~~l~~~c~~~Gl~~~~~~~~~i~rL~~~ 670 (839)
..+..++|...|+..||...|.+..|+.||..+
T Consensus 2 ~~l~~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~ 34 (35)
T smart00513 2 AKLKVSELKDELKKRGLSTSGTKAELVDRLLEA 34 (35)
T ss_pred CcCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 356789999999999999999999999999764
No 125
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.19 E-value=0.13 Score=61.09 Aligned_cols=75 Identities=16% Similarity=0.227 Sum_probs=65.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCe-eEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 186 TNLYVGNLSPQVDENFLLRTFGRFGPI-ASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~L~~lF~~fG~I-~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
+-|-|.|.|++++-+++.++|..|-.+ .+|.|-+ .+.|..-|-+.|+|++.++|.+|...++++.|..+.++|..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~----nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRR----NDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEee----cCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 478899999999999999999999776 4566653 44678888899999999999999999999999999999875
No 126
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.65 E-value=0.18 Score=51.94 Aligned_cols=63 Identities=16% Similarity=0.197 Sum_probs=46.6
Q ss_pred HHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhC--CCEECCeEEEEEeecCCCC
Q 003204 199 ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ--GVVVYEYELKIGWGKSVAL 270 (839)
Q Consensus 199 Ee~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~ln--G~~i~Gr~IkV~~ak~~~~ 270 (839)
.+.|+.+|..|+.+.....+. +-+-..|.|.+.++|.+|...|+ +..++|..|+|.|+....+
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~---------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLK---------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEET---------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS-
T ss_pred HHHHHHHHHhcCCceEEEEcC---------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccc
Confidence 478999999999999888872 33445899999999999999999 9999999999999976654
No 127
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.45 E-value=0.34 Score=48.00 Aligned_cols=52 Identities=27% Similarity=0.448 Sum_probs=45.2
Q ss_pred HHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 201 FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 201 ~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
+|.+.|..||.+.-|+++ .+.-+|+|.+-.+|.+|+ .|+|..++|+.|+|..
T Consensus 52 ~ll~~~~~~GevvLvRfv-----------~~~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~L 103 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFV-----------GDTMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRL 103 (146)
T ss_dssp HHHHHHHCCS-ECEEEEE-----------TTCEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE
T ss_pred HHHHHHHhCCceEEEEEe-----------CCeEEEEECccHHHHHHH-ccCCcEECCEEEEEEe
Confidence 677789999999999988 145699999999999998 8999999999999985
No 128
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.34 E-value=0.07 Score=60.02 Aligned_cols=72 Identities=25% Similarity=0.326 Sum_probs=57.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCE-ECCeEEEEEe
Q 003204 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV-VYEYELKIGW 264 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~-i~Gr~IkV~~ 264 (839)
..||+|||.+.++..+|..+|+..-.-.+-.+| ...||+||.+.+...|.+|+..++|++ +.|.++.|..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl---------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL---------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEH 72 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee---------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccc
Confidence 368999999999999999999755221222222 245899999999999999999999976 8899999887
Q ss_pred ec
Q 003204 265 GK 266 (839)
Q Consensus 265 ak 266 (839)
.-
T Consensus 73 sv 74 (584)
T KOG2193|consen 73 SV 74 (584)
T ss_pred hh
Confidence 53
No 129
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=93.28 E-value=0.16 Score=58.46 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=56.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
...|-+.+||+.||+++|.++|+---.|...-++ .....+++.|=|||+|.+.+.|+.|+ .-+...|+.+=|.|--
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l---~~d~rgR~tGEAfVqF~sqe~ae~Al-~rhre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILL---PMDQRGRPTGEAFVQFESQESAEIAL-GRHRENIGHRYIEVFR 178 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceee---eccCCCCcccceEEEecCHHHHHHHH-HHHHHhhccceEEeeh
Confidence 3578899999999999999999866444442222 23456778899999999999999998 4444556666666653
No 130
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=92.17 E-value=0.14 Score=62.24 Aligned_cols=80 Identities=10% Similarity=0.068 Sum_probs=71.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
...|||.|+|+..|.+.|+.+|..+|.+.+++++ ....|+++|-+||.|.+..++.+++..+++..+.-+.+.|..
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~v----t~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLV----TVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchh----hhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccc
Confidence 5689999999999999999999999999999877 345689999999999999999999988998888888888887
Q ss_pred ecCC
Q 003204 265 GKSV 268 (839)
Q Consensus 265 ak~~ 268 (839)
+.+.
T Consensus 812 snp~ 815 (881)
T KOG0128|consen 812 SNPE 815 (881)
T ss_pred cCCc
Confidence 7663
No 131
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.83 E-value=0.47 Score=46.74 Aligned_cols=73 Identities=22% Similarity=0.347 Sum_probs=58.3
Q ss_pred CCCccEEEEcCCCCCCCH-HHHH---HHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECC
Q 003204 182 DPQTTNLYVGNLSPQVDE-NFLL---RTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 257 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtE-e~L~---~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~G 257 (839)
+|.-.||-|.=|..++.. ++|+ .-.+.||+|.+|... ++..|.|.|.+..+|=+|+.+++. ...|
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----------GrqsavVvF~d~~SAC~Av~Af~s-~~pg 151 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----------GRQSAVVVFKDITSACKAVSAFQS-RAPG 151 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----------CCceEEEEehhhHHHHHHHHhhcC-CCCC
Confidence 556678888877776643 4444 446899999999887 467899999999999999999876 6678
Q ss_pred eEEEEEee
Q 003204 258 YELKIGWG 265 (839)
Q Consensus 258 r~IkV~~a 265 (839)
..+++.|-
T Consensus 152 tm~qCsWq 159 (166)
T PF15023_consen 152 TMFQCSWQ 159 (166)
T ss_pred ceEEeecc
Confidence 99999993
No 132
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=90.82 E-value=0.29 Score=57.07 Aligned_cols=74 Identities=16% Similarity=0.221 Sum_probs=56.8
Q ss_pred cEEEEcCCCCCCC------HHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEEC-Ce
Q 003204 186 TNLYVGNLSPQVD------ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY-EY 258 (839)
Q Consensus 186 ttLfVgNLp~~vt------Ee~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~-Gr 258 (839)
+.|+|.|.|---. ...|..+|+++|+|..+.+.. ++.+| .+||.|++|.+..+|+.|++.+||+.++ .+
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~---~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPI---DEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeecc---CccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 5788888874211 124667899999988877652 44444 8999999999999999999999999986 45
Q ss_pred EEEEE
Q 003204 259 ELKIG 263 (839)
Q Consensus 259 ~IkV~ 263 (839)
...|.
T Consensus 135 tf~v~ 139 (698)
T KOG2314|consen 135 TFFVR 139 (698)
T ss_pred eEEee
Confidence 66665
No 133
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=90.46 E-value=0.12 Score=55.21 Aligned_cols=61 Identities=11% Similarity=0.188 Sum_probs=49.4
Q ss_pred HHHHHHhc-cCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 200 NFLLRTFG-RFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 200 e~L~~lF~-~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
++|...|. +||.|..++|-....+ ..+|-.+|.|...++|++|+..|||..+.|++|...+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~----hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGD----HLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccch----hhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 34445555 9999999987632222 3467789999999999999999999999999999987
No 134
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=90.04 E-value=0.6 Score=54.90 Aligned_cols=77 Identities=14% Similarity=0.223 Sum_probs=63.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhc-cCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEE---CCeE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFG-RFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV---YEYE 259 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~-~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i---~Gr~ 259 (839)
.+..|||.||-.-.|.-+|+.+.+ .+|.|... +| | +-+..|||.|.+.++|-.-..+|+|..| +++.
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm----D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM----D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHH-HH----H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 456799999999999999999998 56666665 33 3 3456679999999999999999999987 5788
Q ss_pred EEEEeecCCC
Q 003204 260 LKIGWGKSVA 269 (839)
Q Consensus 260 IkV~~ak~~~ 269 (839)
|.+.|+..-.
T Consensus 514 L~adf~~~de 523 (718)
T KOG2416|consen 514 LIADFVRADE 523 (718)
T ss_pred eEeeecchhH
Confidence 9999986544
No 135
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=89.72 E-value=0.72 Score=50.13 Aligned_cols=63 Identities=14% Similarity=0.126 Sum_probs=48.8
Q ss_pred HHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 200 NFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 200 e~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
+++.+.+++||.|..|-|.--...+.. ..---||.|...++|.+|+..|||..++|+.++..|
T Consensus 301 de~keEceKyg~V~~viifeip~~p~d--eavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPED--EAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccc--hhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 467788999999999977631111111 112359999999999999999999999999988877
No 136
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=89.47 E-value=1 Score=42.34 Aligned_cols=99 Identities=13% Similarity=0.221 Sum_probs=68.7
Q ss_pred chHHHHHHHHHHhhccccHHHHHHHHHHHhhccCCCcccceeeeeeeehhcccCCCCCCChhhhHHHHHHhhHHHHHHHH
Q 003204 461 ERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFN 540 (839)
Q Consensus 461 tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhNs~~~v~na~~yR~~fe~~Lp~IF~~l~ 540 (839)
...-|.+...-+-+....+.+++..|.++|... ....++--|+|+-=++.||.. .|...|....-. ...+.
T Consensus 17 ~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~--~~~~~lkaL~lLe~lvkN~g~------~f~~~i~~~~~~-~~l~~ 87 (115)
T cd00197 17 DWPLIMEICDLINETNVGPKEAVDAIKKRINNK--NPHVVLKALTLLEYCVKNCGE------RFHQEVASNDFA-VELLK 87 (115)
T ss_pred CHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHccH------HHHHHHHHhHHH-HHHHH
Confidence 445555555555555567899999999999765 477888899999999999953 355555444321 12222
Q ss_pred HHhhhhccccchHHHHHHHHHHHHhhcc
Q 003204 541 DLYRSITGRITAEALKERVLKVLQVWSD 568 (839)
Q Consensus 541 ~~y~~~~~ri~ae~~k~kV~~vL~iWe~ 568 (839)
..|....|+......|+++..|+..|.+
T Consensus 88 ~~~~~~~~~~~~~~Vr~k~~~l~~~w~~ 115 (115)
T cd00197 88 FDKSKLLGDDVSTNVREKAIELVQLWAS 115 (115)
T ss_pred hhccccccCCCChHHHHHHHHHHHHHhC
Confidence 2344456666778999999999999964
No 137
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.31 E-value=0.14 Score=56.44 Aligned_cols=81 Identities=20% Similarity=0.317 Sum_probs=60.3
Q ss_pred cEEEEcCCCCCCC-HHHHH--HHhccCCCeeEEEEeCCCCccccCC-cccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 186 TNLYVGNLSPQVD-ENFLL--RTFGRFGPIASVKIMWPRTEEERRR-QRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 186 ttLfVgNLp~~vt-Ee~L~--~lF~~fG~I~sVkI~~pr~d~~tg~-~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
.-+||-+|++.+. |..|. +.|++||.|.+|.+-..+.- ..+. ...-++|+|...++|.+||...+|.+++|+.++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~-~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSS-SSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCccc-ccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4578889998764 44555 57999999999988742210 1111 122389999999999999999999999999988
Q ss_pred EEeecC
Q 003204 262 IGWGKS 267 (839)
Q Consensus 262 V~~ak~ 267 (839)
..++-.
T Consensus 157 a~~gtt 162 (327)
T KOG2068|consen 157 ASLGTT 162 (327)
T ss_pred HhhCCC
Confidence 887654
No 138
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=88.41 E-value=0.046 Score=66.12 Aligned_cols=69 Identities=26% Similarity=0.461 Sum_probs=57.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECC
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 257 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~G 257 (839)
.+++||.||++.+.+.+|...|+.+|.|..|+|. ....+++.||.|||.|...+++.+|+. ++...+-|
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~---~h~n~~~~rG~~Y~~F~~~~~~~aaV~-f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIV---IHKNEKRFRGKAYVEFLKPEHAGAAVA-FRDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHH---HHhhccccccceeeEeecCCchhhhhh-hhhhhhhh
Confidence 4679999999999999999999999999888776 245678899999999999999999984 44444444
No 139
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=87.25 E-value=2.8 Score=47.26 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=61.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCC-eeE--EEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGP-IAS--VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~-I~s--VkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
+-.|-+.+||+..+-++|..+|+.|-. |.- |.++. ...|++.|-|||.|.+.++|..|....+.+...+|-|.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~----N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiE 355 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL----NGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIE 355 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE----cCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEE
Confidence 456889999999999999999998866 433 66653 45688899999999999999999888887777677777
Q ss_pred EE
Q 003204 262 IG 263 (839)
Q Consensus 262 V~ 263 (839)
|-
T Consensus 356 vf 357 (508)
T KOG1365|consen 356 VF 357 (508)
T ss_pred Ee
Confidence 64
No 140
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=85.77 E-value=0.78 Score=49.15 Aligned_cols=63 Identities=27% Similarity=0.490 Sum_probs=53.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCC
Q 003204 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG 252 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG 252 (839)
..|||-||+..++-+.|.+.|+.||+|....++- +..++..+-++|.|...-.+..|+..++-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~v----D~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKV----DDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeee----cccccccccchhhhhcchhHHHHHHHhcc
Confidence 6899999999999999999999999998765552 34567778899999999999999887743
No 141
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=85.74 E-value=1.8 Score=44.38 Aligned_cols=69 Identities=14% Similarity=0.145 Sum_probs=57.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEE--CCeEEEE
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV--YEYELKI 262 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i--~Gr~IkV 262 (839)
...|.|.+||+.-+.++|+.+..+-|.|--..+.+ -++|.|.|...++.+-|+..|+...+ .|....+
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~r----------Dg~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yi 184 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQR----------DGVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYI 184 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeec----------ccceeeeeeehhhHHHHHHhhccccccCcCcEeeE
Confidence 35789999999999999999999999998877762 35899999999999999999998765 3544444
Q ss_pred E
Q 003204 263 G 263 (839)
Q Consensus 263 ~ 263 (839)
.
T Consensus 185 r 185 (241)
T KOG0105|consen 185 R 185 (241)
T ss_pred E
Confidence 4
No 142
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=85.44 E-value=0.71 Score=53.07 Aligned_cols=76 Identities=20% Similarity=0.294 Sum_probs=61.6
Q ss_pred CccEEEEcCCCCCC-CHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 184 QTTNLYVGNLSPQV-DENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 184 ~~ttLfVgNLp~~v-tEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
+.+.|-+--.++.. |-++|...|.+||.|..|.|-+ +--.|.|+|.++.+|-.|. ...+.+|+++.|+|
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~---------~~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl 440 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY---------SSLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKL 440 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccC---------chhhheeeeeccccccchh-ccccceecCceeEE
Confidence 34566666666665 5689999999999999999875 2346899999999997774 78899999999999
Q ss_pred EeecCCC
Q 003204 263 GWGKSVA 269 (839)
Q Consensus 263 ~~ak~~~ 269 (839)
-|-++.+
T Consensus 441 ~whnps~ 447 (526)
T KOG2135|consen 441 FWHNPSP 447 (526)
T ss_pred EEecCCc
Confidence 9988753
No 143
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=84.66 E-value=3.8 Score=37.08 Aligned_cols=57 Identities=18% Similarity=0.353 Sum_probs=41.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhC
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ 251 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~ln 251 (839)
....||--..|....-.+|.++|+.||.|. |..+ .-..|||...+++.|..|+..++
T Consensus 7 ~RdHVFhltFPkeWK~~DI~qlFspfG~I~-VsWi----------~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 7 SRDHVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWI----------NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp SGCCEEEEE--TT--HHHHHHHCCCCCCEE-EEEE----------CTTEEEEEECCCHHHHHHHHHHT
T ss_pred CcceEEEEeCchHhhhhhHHHHhccCCcEE-EEEE----------cCCcEEEEeecHHHHHHHHHHhc
Confidence 344555445999999999999999999975 4444 23468999999999999988775
No 144
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=82.42 E-value=2.5 Score=50.31 Aligned_cols=103 Identities=19% Similarity=0.347 Sum_probs=84.7
Q ss_pred HHHHHHHHhhc-cchHHHHHHHHHHhhccccHHHHHHHHHHHhhccCCCcccceeeeeeeehhcccCCCCCCChhhhHHH
Q 003204 449 DEFEDMLRALT-LERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTK 527 (839)
Q Consensus 449 ~~l~~lL~~Lt-~tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhNs~~~v~na~~yR~~ 527 (839)
..+...|..|| ..+.-|-.+..-+-|+..+|..||+.|...|... |...||-.+||+--|+-|-.. .|-..
T Consensus 7 ~dy~s~ledltfnskp~i~~lt~la~En~~~a~~iv~~iE~hi~kc--pp~~kL~~~y~~dsi~knvg~------py~~~ 78 (579)
T KOG2071|consen 7 RDYQSSLEDLTFNSKPIINTLTILAEENLPFAKSIVSAIEAHIAKC--PPSQKLPVMYLLDSIVKNVGS------PYTTA 78 (579)
T ss_pred HHHHHHHHHHhcCCcchhHHhhHhhhhcccccHHHHHHHHHHHhhC--CcccccchhhhhHHHHhhcCC------cchhh
Confidence 34667778884 7899999999999999999999999999998766 688999999999999998753 28899
Q ss_pred HHHhhHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhhc
Q 003204 528 FEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWS 567 (839)
Q Consensus 528 fe~~Lp~IF~~l~~~y~~~~~ri~ae~~k~kV~~vL~iWe 567 (839)
|-..|-..|.+ +|... ++-.+.++.+++..|.
T Consensus 79 fs~~l~a~f~~---~~~~v-----d~r~r~~l~~~~~tw~ 110 (579)
T KOG2071|consen 79 FSRNLVATFIC---AFTKV-----DERTRTSLFKLRATWD 110 (579)
T ss_pred hhhhHHHHHHH---HHhhc-----cccccchhHhhHHhhc
Confidence 99988887774 34444 3455778889999998
No 145
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=82.26 E-value=1.1 Score=54.85 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=64.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEE--CCeEEEEE
Q 003204 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV--YEYELKIG 263 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i--~Gr~IkV~ 263 (839)
.+.++-|.+-+.+...|..+|+.||.|.+...++ .-+.+.|.|...+.|-.|+.+++|+.+ -|-+.+|.
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr---------~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~ 369 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLR---------DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVS 369 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecc---------cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEE
Confidence 3455556666778889999999999999998873 457899999999999999999999985 58899999
Q ss_pred eecCCCC
Q 003204 264 WGKSVAL 270 (839)
Q Consensus 264 ~ak~~~~ 270 (839)
+|+..+.
T Consensus 370 ~ak~~~~ 376 (1007)
T KOG4574|consen 370 FAKTLPM 376 (1007)
T ss_pred ecccccc
Confidence 9998764
No 146
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=82.25 E-value=4.3 Score=44.59 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=50.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeE
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~ 259 (839)
-+-|-|-+.|+.-. ..|..+|.+||.|.+...- +..++-+|.|.++.+|++|| ..||..|+|..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~---------~ngNwMhirYssr~~A~KAL-skng~ii~g~v 260 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP---------SNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDV 260 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC---------CCCceEEEEecchhHHHHhh-hhcCeeeccce
Confidence 45677778888754 4566789999999875432 34578899999999999998 78999998854
No 147
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=79.58 E-value=4.8 Score=41.24 Aligned_cols=87 Identities=14% Similarity=0.237 Sum_probs=51.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcc-CCCe---eEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECC--
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGR-FGPI---ASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE-- 257 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~-fG~I---~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~G-- 257 (839)
..+.|-|.+|||++||+++.+.++. ++.- ..+.-..+... ..-....-|||.|.+.+++..-...++|+.+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~-~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKS-FKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SS-STTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCcc-CCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 3578999999999999999998876 6665 34431111111 111112357999999999999999999988732
Q ss_pred ---eEEEEEeecCCCCC
Q 003204 258 ---YELKIGWGKSVALP 271 (839)
Q Consensus 258 ---r~IkV~~ak~~~~p 271 (839)
.+..|.+|=.+.+|
T Consensus 85 g~~~~~~VE~Apyqk~p 101 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQKVP 101 (176)
T ss_dssp S-EEEEEEEE-SS----
T ss_pred CCCcceeEEEcchhccc
Confidence 35566665554443
No 148
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=77.92 E-value=1.2 Score=52.89 Aligned_cols=55 Identities=24% Similarity=0.099 Sum_probs=46.8
Q ss_pred cCCCchhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCcccccccCCCCCcceeeEEE
Q 003204 325 IPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 382 (839)
Q Consensus 325 ~~P~D~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~Np~F~FL~d~~s~~h~YYrwrl 382 (839)
.||.-+....+|+..|++|+++|..||+-+..+ ++-.|.|+ .+..+|+.||-.+.
T Consensus 419 ~ip~~pd~~p~v~~~aE~Vaq~Gl~~e~S~~a~--~d~~~~f~-~pk~~y~~yy~~kk 473 (878)
T KOG1847|consen 419 EIPELPDGDPGVIIRAEDVAQEGLAVEDSKHAF--GDVLPDFS-APKEKYKMYYDKKK 473 (878)
T ss_pred hCCCCCCCchHHHHHHHHHHhhchhhhhhhhhh--cccChhhc-cchhhhhhhhhhhh
Confidence 455557788899999999999999999998876 57778888 47899999998876
No 149
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=74.11 E-value=2.2 Score=51.26 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=60.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeE-EEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIAS-VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~s-VkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
.+..|||-.||..+++..+..+|..--.|.. |.|-+ .-+++.++.|||.|...+++..|...-.-+.++.+.|+|
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~----~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTR----LPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEecc----CCcccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 4568999999999999999999987666655 66654 224567789999999988888887665556677788888
Q ss_pred E
Q 003204 263 G 263 (839)
Q Consensus 263 ~ 263 (839)
.
T Consensus 509 ~ 509 (944)
T KOG4307|consen 509 D 509 (944)
T ss_pred e
Confidence 6
No 150
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=73.90 E-value=21 Score=33.91 Aligned_cols=78 Identities=18% Similarity=0.193 Sum_probs=51.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECC---eEEE
Q 003204 186 TNLYVGNLSPQVDENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE---YELK 261 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~L~~lF~~fG-~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~G---r~Ik 261 (839)
+.+.+...|+.++-+.|..+.+.+- .|..++|++ +. ..++-.+.+.|.+..+|..-...+||+.++. ..++
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riir---d~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Ch 88 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIR---DG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCH 88 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEee---CC--CCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeE
Confidence 3444444444555566655545553 478889984 21 1245678999999999999999999998753 4455
Q ss_pred EEeecCC
Q 003204 262 IGWGKSV 268 (839)
Q Consensus 262 V~~ak~~ 268 (839)
|-|-+.+
T Consensus 89 vvfV~~V 95 (110)
T PF07576_consen 89 VVFVKSV 95 (110)
T ss_pred EEEEEEE
Confidence 5554433
No 151
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=73.71 E-value=4.5 Score=48.55 Aligned_cols=71 Identities=21% Similarity=0.298 Sum_probs=61.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
-|...++||||+...+..+.++.+...||.|.++++. .|||..|..+.-..+|+..+.-..++|..+.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~------------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~ 104 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD------------KFGFCEFLKHIGDLRASRLLTELNIDDQKLI 104 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh------------hhcccchhhHHHHHHHHHHhcccCCCcchhh
Confidence 3445789999999999999999999999999988776 2999999999999999988888888887766
Q ss_pred EEe
Q 003204 262 IGW 264 (839)
Q Consensus 262 V~~ 264 (839)
+..
T Consensus 105 ~~~ 107 (668)
T KOG2253|consen 105 ENV 107 (668)
T ss_pred ccc
Confidence 543
No 152
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=72.25 E-value=16 Score=31.88 Aligned_cols=67 Identities=10% Similarity=0.211 Sum_probs=39.1
Q ss_pred EEEEc-CCCCCCCHHHHHHHhccCCC-----eeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Q 003204 187 NLYVG-NLSPQVDENFLLRTFGRFGP-----IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (839)
Q Consensus 187 tLfVg-NLp~~vtEe~L~~lF~~fG~-----I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~I 260 (839)
+|||. +--..++..+|..++...+. |-.|+|. ..|.||+-.. +.|..++..|++..+.|+++
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-----------~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v 69 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF-----------DNFSFVEVPE-EVAEKVLEALNGKKIKGKKV 69 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE------------SS-EEEEE-T-T-HHHHHHHHTT--SSS---
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe-----------eeEEEEEECH-HHHHHHHHHhcCCCCCCeeE
Confidence 45553 12246788888888865544 5678887 3688998875 47889999999999999999
Q ss_pred EEEee
Q 003204 261 KIGWG 265 (839)
Q Consensus 261 kV~~a 265 (839)
+|..|
T Consensus 70 ~ve~A 74 (74)
T PF03880_consen 70 RVERA 74 (74)
T ss_dssp -EEE-
T ss_pred EEEEC
Confidence 99754
No 153
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=71.02 E-value=12 Score=42.53 Aligned_cols=60 Identities=20% Similarity=0.186 Sum_probs=45.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccC----CCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHH
Q 003204 186 TNLYVGNLSPQVDENFLLRTFGRF----GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDE 249 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~L~~lF~~f----G~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~ 249 (839)
--|-+.+||+++++.++.++|+.- |....|-.+ ..-.|+.-|-|||.|..+++|+.|+..
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV----~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFV----TRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEE----ECCCCCcccceEEEecCHHHHHHHHHH
Confidence 457788999999999999999732 223344444 123467889999999999999999844
No 154
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=69.87 E-value=19 Score=31.25 Aligned_cols=55 Identities=9% Similarity=0.280 Sum_probs=44.0
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 196 QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 196 ~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
.++-++++.-+..|+- .+|.. . ..|| ||.|.+..+|+++....+|..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~----d----~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRD----D----RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEe----c----CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5677899999999874 23431 1 2466 99999999999999999999999988765
No 155
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=69.46 E-value=16 Score=31.29 Aligned_cols=54 Identities=9% Similarity=0.223 Sum_probs=41.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccC----CCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHh
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRF----GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEM 250 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~f----G~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~l 250 (839)
...|+|.++. +++.++++.+|..| + ...|..+ |. ..+-|.|.+...|.+|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWI----dD------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWI----DD------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEe----cC------CcEEEEECCHHHHHHHHHcC
Confidence 3578999984 57888999999888 4 4466666 22 23579999999999999764
No 156
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.81 E-value=15 Score=43.81 Aligned_cols=80 Identities=24% Similarity=0.235 Sum_probs=60.2
Q ss_pred CccEEEEcCCCCC-CCHHHHHHHhccC----CCeeEEEEeCCCCcc--------ccCC----------------------
Q 003204 184 QTTNLYVGNLSPQ-VDENFLLRTFGRF----GPIASVKIMWPRTEE--------ERRR---------------------- 228 (839)
Q Consensus 184 ~~ttLfVgNLp~~-vtEe~L~~lF~~f----G~I~sVkI~~pr~d~--------~tg~---------------------- 228 (839)
.+..|-|.||.|. |...+|.-+|..| |.|.+|+|.. .--. -.|.
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYp-SeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYP-SEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEech-hhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 4678999999996 7889999998766 5799999863 1000 0111
Q ss_pred ---------------cccEEEEEeCCHHHHHHHHHHhCCCEEC--CeEEEEEe
Q 003204 229 ---------------QRNCGFVAFMNRADGQAAKDEMQGVVVY--EYELKIGW 264 (839)
Q Consensus 229 ---------------~rg~gFV~F~~~~dAe~Al~~lnG~~i~--Gr~IkV~~ 264 (839)
..-||.|.|.+...|......++|..+. |..|-+.|
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1237999999999999999999999985 55566655
No 157
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=60.43 E-value=14 Score=43.66 Aligned_cols=82 Identities=12% Similarity=0.101 Sum_probs=53.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHh-ccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEEC----CeE
Q 003204 185 TTNLYVGNLSPQVDENFLLRTF-GRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY----EYE 259 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF-~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~----Gr~ 259 (839)
.||+-|-|++-.-|-..|...- ...|.-.-+.+. .|-.+....|||||.|.+.+++..+.++++|+.|. .+.
T Consensus 388 rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLP---iDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Ki 464 (549)
T KOG4660|consen 388 RTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLP---IDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKI 464 (549)
T ss_pred hhhhHhhccCchhhHHhhhhhhccccCccceEEec---cccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceee
Confidence 3555555555555544444332 123332333332 34445567899999999999999999999999863 467
Q ss_pred EEEEeecCCC
Q 003204 260 LKIGWGKSVA 269 (839)
Q Consensus 260 IkV~~ak~~~ 269 (839)
+.+.||+.+.
T Consensus 465 a~itYArIQG 474 (549)
T KOG4660|consen 465 ASITYARIQG 474 (549)
T ss_pred eeeehhhhhc
Confidence 7888888765
No 158
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=57.37 E-value=6.7 Score=43.29 Aligned_cols=82 Identities=16% Similarity=0.081 Sum_probs=64.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..+++|+|++...+.+.....+|..+|.+..+.... .......++++.|.|...+.+..|+.......+.++.+...
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~---~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~d 163 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSS---LEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKD 163 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhh---hccccccccceeeccccHHHHHHHHHhhhccccccccccCc
Confidence 468999999999999998999999999877665552 34566789999999999999999984444457777776666
Q ss_pred eecCC
Q 003204 264 WGKSV 268 (839)
Q Consensus 264 ~ak~~ 268 (839)
.....
T Consensus 164 l~~~~ 168 (285)
T KOG4210|consen 164 LNTRR 168 (285)
T ss_pred ccccc
Confidence 55443
No 159
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=52.02 E-value=37 Score=35.11 Aligned_cols=76 Identities=16% Similarity=0.189 Sum_probs=55.5
Q ss_pred ccEEEEcCCCCCCCHH-----HHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCe-
Q 003204 185 TTNLYVGNLSPQVDEN-----FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY- 258 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe-----~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr- 258 (839)
.+++.+.+++..|-.+ ....+|.+|-......++ ++.+.--|.|.+...|..|...+.+..+.|.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l---------rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~ 80 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL---------RSFRRVRINFSNPEAAADARIKLHSTSFNGKN 80 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH---------HhhceeEEeccChhHHHHHHHHhhhcccCCCc
Confidence 4678888888765332 234566666665554554 3445567899999999999999999999888
Q ss_pred EEEEEeecCCC
Q 003204 259 ELKIGWGKSVA 269 (839)
Q Consensus 259 ~IkV~~ak~~~ 269 (839)
.++.-++.+.-
T Consensus 81 ~~k~yfaQ~~~ 91 (193)
T KOG4019|consen 81 ELKLYFAQPGH 91 (193)
T ss_pred eEEEEEccCCC
Confidence 88888887664
No 160
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=51.74 E-value=3.3 Score=47.16 Aligned_cols=74 Identities=18% Similarity=0.350 Sum_probs=61.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
...+-|.|+|+....+.|..+...||.+..|..+. ++.++. .--|.|...+.+..|+..++|..+....++|+|
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvn--t~~eta----vvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVN--TDSETA----VVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhc--cchHHH----HHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 34588999999999999999999999999886542 344432 235788999999999999999999999999998
No 161
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=48.06 E-value=36 Score=32.53 Aligned_cols=98 Identities=17% Similarity=0.237 Sum_probs=62.8
Q ss_pred chHHHHHHHHHHhhccccHHHHHHHHHHHh-hccCCCcccceeeeeeeehhcccCCCCCCChhhhHHHHHHhhHHHHHHH
Q 003204 461 ERSQIKEAMGFALDNADAAGEIVEVLTESL-TLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESF 539 (839)
Q Consensus 461 tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l-~~~~t~~~~KLa~LYLinDILhNs~~~v~na~~yR~~fe~~Lp~IF~~l 539 (839)
+-.-..+....+.++ ..+..|+++|.++| .........++--|.||.-+|.|++ ..|...|...+..|....
T Consensus 20 ~~~~l~eIa~~t~~~-~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~------~~~~~~~~~~~~~I~~l~ 92 (125)
T PF01417_consen 20 PGKLLAEIAQLTYNS-KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGS------ERFVDELRDHIDIIRELQ 92 (125)
T ss_dssp -HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-------HHHHHHHHHTHHHHHGGG
T ss_pred CHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHHHhhcc
Confidence 334444555555555 78999999999999 4444446677888999999999995 357777766666444321
Q ss_pred HHHhhhhccccchHHHHHHHHHHHHh
Q 003204 540 NDLYRSITGRITAEALKERVLKVLQV 565 (839)
Q Consensus 540 ~~~y~~~~~ri~ae~~k~kV~~vL~i 565 (839)
.-.|-...|......+|++...|+.+
T Consensus 93 ~f~~~d~~g~d~~~~VR~~A~~i~~l 118 (125)
T PF01417_consen 93 DFQYVDPKGKDQGQNVREKAKEILEL 118 (125)
T ss_dssp G---BBTTSTBHHHHHHHHHHHHHHH
T ss_pred eeeccCCCCccHHHHHHHHHHHHHHH
Confidence 11121123445556788888888887
No 162
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=47.95 E-value=31 Score=41.04 Aligned_cols=71 Identities=10% Similarity=0.142 Sum_probs=53.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhc--cCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCC--CEECC
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFG--RFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG--VVVYE 257 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~--~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG--~~i~G 257 (839)
....|-|.+.-+|..+-.++++.||. .|-.+.+|..-. +-++ ||+|.+..||+.|.+.|.- +.|.|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~---------N~nW-yITfesd~DAQqAykylreevk~fqg 241 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH---------NDNW-YITFESDTDAQQAYKYLREEVKTFQG 241 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee---------cCce-EEEeecchhHHHHHHHHHHHHHhhcC
Confidence 33467788999999999999999995 588888887762 3344 9999999999999876643 23555
Q ss_pred eEEEE
Q 003204 258 YELKI 262 (839)
Q Consensus 258 r~IkV 262 (839)
++|..
T Consensus 242 KpImA 246 (684)
T KOG2591|consen 242 KPIMA 246 (684)
T ss_pred cchhh
Confidence 55543
No 163
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=46.72 E-value=68 Score=31.35 Aligned_cols=82 Identities=21% Similarity=0.428 Sum_probs=52.2
Q ss_pred cccHHHHHHHHHHHhhccCCCcccceeeeeeeehhcccCCCCCCChhhhHHHHHHhhHHHHHHHHHHhhhhccccchHH-
Q 003204 476 ADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEA- 554 (839)
Q Consensus 476 a~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhNs~~~v~na~~yR~~fe~~Lp~IF~~l~~~y~~~~~ri~ae~- 554 (839)
...+.+++.+|.++|... +....+.-|.|+-=++.||. ..|+..+-.. ..+..|..+.. .+-....
T Consensus 37 ~~~~kea~~~l~krl~~~--~~~vq~~aL~lld~lvkNcg------~~f~~ev~~~--~fl~~l~~l~~---~~~~~~~~ 103 (140)
T PF00790_consen 37 PDGAKEAARALRKRLKHG--NPNVQLLALTLLDALVKNCG------PRFHREVASK--EFLDELVKLIK---SKKTDPET 103 (140)
T ss_dssp TTHHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHSH------HHHHHHHTSH--HHHHHHHHHHH---HTTTHHHS
T ss_pred CccHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHcCC------HHHHHHHhHH--HHHHHHHHHHc---cCCCCchh
Confidence 446899999999999774 35667777999999999994 2344432111 11112222211 1223333
Q ss_pred -HHHHHHHHHHhhccCc
Q 003204 555 -LKERVLKVLQVWSDWF 570 (839)
Q Consensus 555 -~k~kV~~vL~iWe~~~ 570 (839)
.+++++.+|..|....
T Consensus 104 ~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 104 PVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 8999999999998765
No 164
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=45.59 E-value=5.2 Score=42.23 Aligned_cols=68 Identities=35% Similarity=0.538 Sum_probs=55.2
Q ss_pred CCCccEEEEcC----CCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 003204 182 DPQTTNLYVGN----LSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 253 (839)
Q Consensus 182 dp~~ttLfVgN----Lp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~ 253 (839)
++...+++.|| |...++++.+...|+.-|++..+++-. +. .|+++.++||.+......-.++...++.
T Consensus 77 ~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~---~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l 148 (267)
T KOG4454|consen 77 DEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPT---DN-DGRNRNFGFVTYQRLCAVPFALDLYQGL 148 (267)
T ss_pred chhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccc---cc-cCCccCccchhhhhhhcCcHHhhhhccc
Confidence 44567888998 888999999999999999999999874 22 3789999999998877777777655543
No 165
>KOG0965 consensus Predicted RNA-binding protein, contains SWAP and G-patch domains [General function prediction only]
Probab=43.78 E-value=4.5 Score=49.07 Aligned_cols=60 Identities=20% Similarity=0.140 Sum_probs=53.4
Q ss_pred CCchhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCcccccccCCCCCcceeeEEEeeec
Q 003204 327 PEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFA 386 (839)
Q Consensus 327 P~D~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~Np~F~FL~d~~s~~h~YYrwrl~s~~ 386 (839)
|.-...+.+|+.++.++.-.|.+.+-.+|+--+.||.|.||-|..+-++.||+-++-++.
T Consensus 527 ~~~a~~rvv~~i~~~~~~~~~~~L~~~~~tl~k~~pa~~Flsd~ns~e~~yyk~k~aeI~ 586 (988)
T KOG0965|consen 527 PQRADHRVVGTIDQLVKRVIEGSLSPKERTLLKEDPAYWFLSDENSLEYKYYKLKLAEIQ 586 (988)
T ss_pred ccCCCceeeeehhhhHHhhccccccHHHHHHhhhchhhhhhcchhhhHHHHhccccHHHH
Confidence 344557888999999999999999999999999999999999999999999999987654
No 166
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=43.74 E-value=30 Score=28.65 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=23.7
Q ss_pred HhhcchhhHHHHhcCChHHHHHHHHHcCcc
Q 003204 626 LAMGKGAAIKELMNLPLSELERRCRHNGLS 655 (839)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~l~~~c~~~Gl~ 655 (839)
....+...+..-.++....|+|.|++.||.
T Consensus 13 ~fhlp~~eAA~~Lgv~~T~LKr~CR~~GI~ 42 (52)
T PF02042_consen 13 YFHLPIKEAAKELGVSVTTLKRRCRRLGIP 42 (52)
T ss_pred HhCCCHHHHHHHhCCCHHHHHHHHHHcCCC
Confidence 334455566677899999999999999985
No 167
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=43.14 E-value=49 Score=38.54 Aligned_cols=68 Identities=21% Similarity=0.308 Sum_probs=56.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccC-CCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECC
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRF-GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 257 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~f-G~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~G 257 (839)
.+.|+|=.+|-.+|.-+|..+...| -.|..++|++ |. -..+-...|.|.+..+|..-...+||+.++.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivR---d~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVR---DG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEee---cC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 6889999999999999999998765 4489999995 21 1234568999999999999999999998753
No 168
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=34.96 E-value=52 Score=32.01 Aligned_cols=80 Identities=20% Similarity=0.344 Sum_probs=49.6
Q ss_pred ccHHHHHHHHHHHhhccCCCcccceeeeeeeehhcccCCCCCCChhhhHHHHHHhhHHHHHHHHHHhhhhccccchHHHH
Q 003204 477 DAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALK 556 (839)
Q Consensus 477 ~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhNs~~~v~na~~yR~~fe~~Lp~IF~~l~~~y~~~~~ri~ae~~k 556 (839)
..+.+.+..|.+.|...+ ....+.-|-|+--++.||..+...-- -...|-..|..++. .+-.....+
T Consensus 33 ~~~k~a~r~l~krl~~~n--~~v~l~AL~lLe~~vkNcg~~f~~ev-~s~~fl~~L~~l~~----------~~~~~~~Vk 99 (133)
T smart00288 33 DGPKDAVRLLKKRLNNKN--PHVALLALTLLDACVKNCGSKFHLEV-ASKEFLNELVKLIK----------PKYPLPLVK 99 (133)
T ss_pred ccHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHCCHHHHHHH-HhHHHHHHHHHHHc----------CCCCcHHHH
Confidence 358899999999997543 45566678899999999953211111 11122223332221 222333489
Q ss_pred HHHHHHHHhhccC
Q 003204 557 ERVLKVLQVWSDW 569 (839)
Q Consensus 557 ~kV~~vL~iWe~~ 569 (839)
+++..++..|...
T Consensus 100 ~kil~li~~W~~~ 112 (133)
T smart00288 100 KRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999763
No 169
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=32.70 E-value=1.1e+02 Score=29.64 Aligned_cols=77 Identities=14% Similarity=0.305 Sum_probs=52.2
Q ss_pred cccHHHHHHHHHHHhhccCCCcccceeeeeeeehhcccCCCCCCChhhhHHHHHH-----hhHHHHHHHHHHhhhhcccc
Q 003204 476 ADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEA-----TLPDIMESFNDLYRSITGRI 550 (839)
Q Consensus 476 a~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhNs~~~v~na~~yR~~fe~-----~Lp~IF~~l~~~y~~~~~ri 550 (839)
...+.+.+..|.+.|... +....+.-|.|+-=++.||..+ |...+-. .|..++. .. -.
T Consensus 32 ~~~~k~a~raL~krl~~~--n~~vql~AL~lLd~~vkNcg~~------f~~~i~s~~fl~~l~~l~~-------~~--~~ 94 (133)
T cd03561 32 PNGPKEAARAIRKKIKYG--NPHVQLLALTLLELLVKNCGKP------FHLQVADKEFLLELVKIAK-------NS--PK 94 (133)
T ss_pred CCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhCChH------HHHHHhhHHHHHHHHHHhC-------CC--CC
Confidence 345889999999999765 3566667799999999999532 3333322 1222211 11 14
Q ss_pred chHHHHHHHHHHHHhhccC
Q 003204 551 TAEALKERVLKVLQVWSDW 569 (839)
Q Consensus 551 ~ae~~k~kV~~vL~iWe~~ 569 (839)
.....++++..+|..|...
T Consensus 95 ~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 95 YDPKVREKALELILAWSES 113 (133)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 5678999999999999863
No 170
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=31.65 E-value=65 Score=25.33 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=25.6
Q ss_pred HHhcCChHHHHHHHHHcCcccc--cChHHHHHHHHh
Q 003204 636 ELMNLPLSELERRCRHNGLSLV--GGREMMVARLLS 669 (839)
Q Consensus 636 ~~~~~~~~~l~~~c~~~Gl~~~--~~~~~~i~rL~~ 669 (839)
++..+...+|...|+..||... -++++||..++-
T Consensus 1 eL~~~~~~eL~~iAk~lgI~~~~~~~K~eLI~~Il~ 36 (43)
T PF07498_consen 1 ELKSMTLSELREIAKELGIEGYSKMRKQELIFAILK 36 (43)
T ss_dssp HHHCS-HHHHHHHHHCTT-TTGCCS-HHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHcCCCCCCcCCHHHHHHHHHH
Confidence 4678899999999999999654 488899988764
No 171
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=28.17 E-value=1e+02 Score=24.71 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=28.4
Q ss_pred HhcCChHHHHHHHHHcCcccc----cChHHHHHHHHhHH
Q 003204 637 LMNLPLSELERRCRHNGLSLV----GGREMMVARLLSLE 671 (839)
Q Consensus 637 ~~~~~~~~l~~~c~~~Gl~~~----~~~~~~i~rL~~~~ 671 (839)
+..++.+||...|++.|+... .++...+.+|..+.
T Consensus 3 ~~~LSd~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~~~~ 41 (44)
T smart00540 3 VDRLSDAELRAELKQYGLPPGPITDTTRKLYEKKLRKLR 41 (44)
T ss_pred hhHcCHHHHHHHHHHcCCCCCCcCcchHHHHHHHHHHHH
Confidence 456788999999999999774 68888888887664
No 172
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=27.59 E-value=86 Score=34.78 Aligned_cols=84 Identities=17% Similarity=0.305 Sum_probs=57.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCC----ccccCCcccEEEEEeCCHHHHHHHHH----HhCC-
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRT----EEERRRQRNCGFVAFMNRADGQAAKD----EMQG- 252 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~----d~~tg~~rg~gFV~F~~~~dAe~Al~----~lnG- 252 (839)
.-.+++|...|+...++--.+...|-+||+|.+|.++.... +...-....+..+.|-+++.+..-.. .|.-
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 33577899999999999999999999999999999994220 00112234567999999988755321 1211
Q ss_pred -CEECCeEEEEEee
Q 003204 253 -VVVYEYELKIGWG 265 (839)
Q Consensus 253 -~~i~Gr~IkV~~a 265 (839)
..+.-..|.|.|.
T Consensus 92 K~~L~S~~L~lsFV 105 (309)
T PF10567_consen 92 KTKLKSESLTLSFV 105 (309)
T ss_pred HHhcCCcceeEEEE
Confidence 2355667777764
No 173
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=26.65 E-value=18 Score=39.27 Aligned_cols=69 Identities=26% Similarity=0.397 Sum_probs=43.7
Q ss_pred cEEEEcCCCC------------CCCHHHHHHHhccCCCeeEEEEeC--CCCccccCCc-----ccEE---------EEEe
Q 003204 186 TNLYVGNLSP------------QVDENFLLRTFGRFGPIASVKIMW--PRTEEERRRQ-----RNCG---------FVAF 237 (839)
Q Consensus 186 ttLfVgNLp~------------~vtEe~L~~lF~~fG~I~sVkI~~--pr~d~~tg~~-----rg~g---------FV~F 237 (839)
-|||+.+||- --+|+.|+..|..||.|..|.|.- |-...-+|+. .||| ||.|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 4778887772 246788999999999999887643 2112233443 2333 4556
Q ss_pred CCHHHHHHHHHHhCCCE
Q 003204 238 MNRADGQAAKDEMQGVV 254 (839)
Q Consensus 238 ~~~~dAe~Al~~lnG~~ 254 (839)
+...-...|+.+|.|..
T Consensus 230 meykgfa~amdalr~~k 246 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMK 246 (445)
T ss_pred HHHHhHHHHHHHHhcch
Confidence 65555566777776654
No 174
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=26.24 E-value=86 Score=31.00 Aligned_cols=82 Identities=16% Similarity=0.307 Sum_probs=50.4
Q ss_pred cHHHHHHHHHHHhhccCCCcccceeeeeeeehhcccCCCCCCChhhhHHHHHHhhHHHHHHHHHHhhhhccccchHHHHH
Q 003204 478 AAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKE 557 (839)
Q Consensus 478 ~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhNs~~~v~na~~yR~~fe~~Lp~IF~~l~~~y~~~~~ri~ae~~k~ 557 (839)
.+.+.+..|.+.|...+ ....|--|-|+-=+..||..+.. .-.-...|-.-|..++. .-| .|+......++
T Consensus 35 ~~k~a~rai~krl~~~n--~~v~l~AL~LLe~~vkNCG~~fh-~evas~~Fl~el~kl~~---~k~---~~~~~~~~Vk~ 105 (139)
T cd03567 35 GPQLAVRLLAHKIQSPQ--EKEALQALTVLEACMKNCGERFH-SEVGKFRFLNELIKLVS---PKY---LGSRTSEKVKT 105 (139)
T ss_pred cHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHcCHHHH-HHHHhHHHHHHHHHHhc---ccc---CCCCCCHHHHH
Confidence 47788888888886543 34456667777778888853211 11112333333444332 111 23445688999
Q ss_pred HHHHHHHhhcc
Q 003204 558 RVLKVLQVWSD 568 (839)
Q Consensus 558 kV~~vL~iWe~ 568 (839)
+|..+|..|.+
T Consensus 106 kil~li~~W~~ 116 (139)
T cd03567 106 KIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 175
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=24.37 E-value=77 Score=32.25 Aligned_cols=37 Identities=32% Similarity=0.415 Sum_probs=33.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEe
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIM 218 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~ 218 (839)
....++++++|++..++...+...|..+|.+..+.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeecc
Confidence 4457899999999999999999999999999777766
No 176
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=22.43 E-value=2.5e+02 Score=27.89 Aligned_cols=80 Identities=18% Similarity=0.344 Sum_probs=50.7
Q ss_pred cccHHHHHHHHHHHhhccCCCcccceeeeeeeehhcccCCCCCCChhhhHHHHHHhhHHHHHHHHHHhhhhccccchHHH
Q 003204 476 ADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEAL 555 (839)
Q Consensus 476 a~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhNs~~~v~na~~yR~~fe~~Lp~IF~~l~~~y~~~~~ri~ae~~ 555 (839)
...+.+.+.+|.+.|...+ ....+.-|-|+--+..||........ -...|-..|..++ ..+ .....
T Consensus 32 ~~~~k~a~ral~KRl~~~n--~~v~l~AL~LLe~~vkNCG~~fh~ev-ask~Fl~eL~kl~----------~~~-~~~~V 97 (144)
T cd03568 32 ENGAKDCLKAIMKRLNHKD--PNVQLRALTLLDACAENCGKRFHQEV-ASRDFTQELKKLI----------NDR-VHPTV 97 (144)
T ss_pred CccHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHCCHHHHHHH-hhHHHHHHHHHHh----------ccc-CCHHH
Confidence 4458899999999987543 45666678888888899963211111 1122333333222 222 56789
Q ss_pred HHHHHHHHHhhccC
Q 003204 556 KERVLKVLQVWSDW 569 (839)
Q Consensus 556 k~kV~~vL~iWe~~ 569 (839)
+++|+.+|..|..-
T Consensus 98 k~kil~li~~W~~~ 111 (144)
T cd03568 98 KEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999743
No 177
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=22.35 E-value=19 Score=41.09 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=49.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEEC
Q 003204 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY 256 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~ 256 (839)
.+++|++|+..+...++.++|..+|.|....+- .|-...++.|.|........|+ .++|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a-------sk~~s~~c~~sf~~qts~~hal-r~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTA-------SKSRSSSCSHSFRKQTSSKHAL-RSHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhh-------ccCCCcchhhhHhhhhhHHHHH-Hhcchhhh
Confidence 679999999999999999999999998766554 2233445569999888888887 56666544
No 178
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=21.50 E-value=1.1e+02 Score=33.77 Aligned_cols=54 Identities=20% Similarity=0.261 Sum_probs=39.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHH
Q 003204 181 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRAD 242 (839)
Q Consensus 181 ~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~d 242 (839)
+.+..+-|||+||+.++.-.+|+....+-|-+ -..|-| .| +++-+|..|-++..
T Consensus 326 ~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~isw------kg-~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 326 EAGAKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISW------KG-HFGKCFLHFGNRKG 379 (396)
T ss_pred cCccccceeeccCccccchHHHHHHHHhcCCC-ceeEee------ec-CCcceeEecCCccC
Confidence 34456789999999999999999988776643 245555 22 34567999988653
Done!