Query 003204
Match_columns 839
No_of_seqs 509 out of 2124
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 17:04:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003204.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003204hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2km4_A Regulator of TY1 transp 99.9 2.7E-26 9.3E-31 222.8 8.5 130 448-587 5-134 (142)
2 4fu3_A Regulation of nuclear P 99.9 9.2E-26 3.1E-30 216.7 6.0 128 447-587 5-132 (135)
3 4flb_A Regulation of nuclear P 99.9 6.1E-25 2.1E-29 210.4 7.6 126 446-586 5-130 (132)
4 1x4o_A Splicing factor 4; stru 99.8 2.1E-21 7.3E-26 169.5 0.9 72 320-391 5-76 (78)
5 1ug0_A Splicing factor 4; SURP 99.8 8.3E-21 2.8E-25 169.2 -0.9 71 321-391 16-86 (88)
6 1sz9_A PCF11 protein; RNA poly 99.7 2.4E-18 8.1E-23 167.3 9.9 126 446-587 7-138 (144)
7 4fxv_A ELAV-like protein 1; RN 99.7 4.2E-18 1.4E-22 154.7 10.7 82 183-267 17-98 (99)
8 2e60_A SFRS8 protein, splicing 99.7 4.8E-18 1.6E-22 154.9 1.6 69 322-391 17-85 (101)
9 3s8s_A Histone-lysine N-methyl 99.7 1.7E-16 5.7E-21 147.0 11.5 83 182-267 3-85 (110)
10 2dgo_A Cytotoxic granule-assoc 99.7 8.1E-16 2.8E-20 142.0 14.6 86 181-269 11-96 (115)
11 2e5h_A Zinc finger CCHC-type a 99.7 5.4E-16 1.8E-20 137.8 12.8 83 181-266 12-94 (94)
12 2e5z_A SFRS8 protein, splicing 99.7 1E-17 3.5E-22 149.0 1.5 59 330-391 22-80 (90)
13 3md1_A Nuclear and cytoplasmic 99.7 3.9E-16 1.3E-20 135.4 11.2 81 185-268 1-81 (83)
14 4f25_A Polyadenylate-binding p 99.7 3E-16 1E-20 145.8 10.6 80 184-268 4-83 (115)
15 3bs9_A Nucleolysin TIA-1 isofo 99.6 4.1E-16 1.4E-20 136.4 10.4 82 184-268 5-86 (87)
16 3mdf_A Peptidyl-prolyl CIS-tra 99.6 4.7E-16 1.6E-20 135.4 10.2 81 183-266 5-85 (85)
17 2dt6_A Splicing factor 3 subun 99.6 1.4E-17 4.8E-22 140.1 0.5 60 331-391 2-61 (64)
18 2lxi_A RNA-binding protein 10; 99.6 1.5E-16 5.1E-21 142.0 7.2 82 185-269 1-84 (91)
19 1whw_A Hypothetical protein ri 99.6 1.1E-15 3.6E-20 137.3 12.2 84 183-269 6-89 (99)
20 2cpf_A RNA binding motif prote 99.6 7E-16 2.4E-20 138.3 10.7 87 183-269 3-89 (98)
21 2cqb_A Peptidyl-prolyl CIS-tra 99.6 1E-15 3.5E-20 138.2 11.8 84 183-269 10-93 (102)
22 2dgs_A DAZ-associated protein 99.6 1.4E-15 4.9E-20 136.7 12.7 83 183-269 8-90 (99)
23 2lkz_A RNA-binding protein 5; 99.6 4.4E-16 1.5E-20 140.8 9.2 81 184-267 8-94 (95)
24 2cqd_A RNA-binding region cont 99.6 2.4E-15 8.4E-20 139.2 14.5 87 181-271 13-99 (116)
25 2cq0_A Eukaryotic translation 99.6 1.5E-15 5.2E-20 137.4 12.6 85 182-269 12-96 (103)
26 2dnz_A Probable RNA-binding pr 99.6 1.3E-15 4.4E-20 135.6 11.9 84 183-269 3-86 (95)
27 2cqc_A Arginine/serine-rich sp 99.6 1.3E-15 4.5E-20 135.3 11.9 83 182-267 12-94 (95)
28 2cpz_A CUG triplet repeat RNA- 99.6 1.9E-15 6.6E-20 139.6 13.4 86 181-269 21-106 (115)
29 3d9j_A RNA-binding protein 16; 99.6 1.9E-16 6.5E-21 154.1 6.7 130 447-587 3-138 (145)
30 2khc_A Testis-specific RNP-typ 99.6 2.7E-15 9.2E-20 139.1 13.9 84 180-266 35-118 (118)
31 2do4_A Squamous cell carcinoma 99.6 1.7E-15 5.9E-20 136.4 12.2 83 182-268 14-96 (100)
32 2dnm_A SRP46 splicing factor; 99.6 1.2E-15 4.2E-20 138.0 10.8 85 182-269 10-94 (103)
33 2la6_A RNA-binding protein FUS 99.6 1.1E-15 3.7E-20 137.6 10.1 82 182-266 10-99 (99)
34 2x1f_A MRNA 3'-END-processing 99.6 1.5E-15 5.2E-20 135.8 11.0 82 185-269 2-83 (96)
35 1x5t_A Splicing factor 3B subu 99.6 1.7E-15 5.7E-20 135.1 11.2 83 184-269 4-87 (96)
36 2div_A TRNA selenocysteine ass 99.6 9.1E-16 3.1E-20 137.8 9.2 84 184-270 8-96 (99)
37 2dgp_A Bruno-like 4, RNA bindi 99.6 1.3E-15 4.6E-20 138.4 10.3 87 180-269 8-97 (106)
38 3p5t_L Cleavage and polyadenyl 99.6 1.9E-16 6.5E-21 140.4 4.6 81 186-269 2-84 (90)
39 2cq3_A RNA-binding protein 9; 99.6 6.8E-15 2.3E-19 133.2 14.8 84 181-269 11-94 (103)
40 1p27_B RNA-binding protein 8A; 99.6 1.1E-15 3.6E-20 139.0 9.4 84 183-269 21-104 (106)
41 2jrs_A RNA-binding protein 39; 99.6 1.9E-15 6.4E-20 139.1 10.9 85 181-268 22-106 (108)
42 2cph_A RNA binding motif prote 99.6 2.9E-15 1E-19 136.2 11.9 85 182-269 12-98 (107)
43 1x5u_A Splicing factor 3B subu 99.6 1.9E-15 6.6E-20 137.1 10.7 85 182-269 12-96 (105)
44 2fy1_A RNA-binding motif prote 99.6 2.2E-15 7.7E-20 140.3 11.3 82 184-269 6-87 (116)
45 1sjq_A Polypyrimidine tract-bi 99.6 1.3E-15 4.4E-20 140.4 9.5 81 182-271 13-95 (105)
46 1x4h_A RNA-binding protein 28; 99.6 3.2E-15 1.1E-19 136.8 12.1 85 182-269 12-102 (111)
47 2do0_A HnRNP M, heterogeneous 99.6 7.3E-15 2.5E-19 135.2 14.6 83 182-268 12-94 (114)
48 1x5s_A Cold-inducible RNA-bind 99.6 1.9E-15 6.4E-20 136.5 10.4 84 183-269 10-93 (102)
49 1oo0_B CG8781-PA, drosophila Y 99.6 2.3E-15 7.8E-20 137.9 10.7 84 182-268 23-106 (110)
50 2d9p_A Polyadenylate-binding p 99.6 3.8E-15 1.3E-19 134.8 11.9 83 182-269 12-94 (103)
51 2dgx_A KIAA0430 protein; RRM d 99.6 3.2E-15 1.1E-19 134.2 11.3 80 184-269 8-91 (96)
52 2dnh_A Bruno-like 5, RNA bindi 99.6 3.1E-15 1.1E-19 135.7 11.3 84 182-269 12-98 (105)
53 2cpe_A RNA-binding protein EWS 99.6 4E-15 1.4E-19 136.9 12.2 85 182-269 12-104 (113)
54 3ns6_A Eukaryotic translation 99.6 4.4E-16 1.5E-20 141.1 5.6 81 184-267 5-92 (100)
55 2cqp_A RNA-binding protein 12; 99.6 2E-15 6.9E-20 135.3 9.8 85 181-268 11-95 (98)
56 4a8x_A RNA-binding protein wit 99.6 2.7E-15 9.2E-20 131.3 10.2 82 184-268 3-85 (88)
57 2ywk_A Putative RNA-binding pr 99.6 2.6E-15 8.8E-20 133.6 10.1 82 182-267 13-94 (95)
58 2dgt_A RNA-binding protein 30; 99.6 8.3E-15 2.8E-19 130.0 13.1 77 182-269 7-83 (92)
59 2dhg_A TRNA selenocysteine ass 99.6 1.8E-15 6.2E-20 137.0 8.8 82 184-269 8-91 (104)
60 2dgv_A HnRNP M, heterogeneous 99.6 2.9E-15 9.9E-20 132.5 9.8 82 183-269 6-87 (92)
61 2ytc_A PRE-mRNA-splicing facto 99.6 4.3E-15 1.5E-19 129.5 10.7 76 182-266 9-85 (85)
62 2dng_A Eukaryotic translation 99.6 8.2E-15 2.8E-19 132.8 12.9 82 183-269 13-94 (103)
63 2kt5_A RNA and export factor-b 99.6 7.7E-15 2.6E-19 137.5 13.1 85 182-270 32-116 (124)
64 2cpi_A CCR4-NOT transcription 99.6 4.2E-15 1.4E-19 137.1 11.0 86 184-269 14-102 (111)
65 3s7r_A Heterogeneous nuclear r 99.6 5.1E-15 1.7E-19 129.8 10.9 80 182-265 8-87 (87)
66 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.1E-14 3.7E-19 131.9 13.3 83 182-269 12-94 (103)
67 2err_A Ataxin-2-binding protei 99.6 4.7E-15 1.6E-19 136.4 11.0 84 181-269 25-108 (109)
68 3ulh_A THO complex subunit 4; 99.6 6E-15 2E-19 134.3 11.4 80 183-266 27-106 (107)
69 2dh8_A DAZ-associated protein 99.6 4.8E-15 1.6E-19 134.6 10.6 85 181-269 12-96 (105)
70 1u6f_A Tcubp1, RNA-binding pro 99.6 7E-15 2.4E-19 140.2 12.3 85 182-269 39-123 (139)
71 3r27_A HnRNP L, heterogeneous 99.6 5.6E-15 1.9E-19 135.0 10.6 79 183-270 19-99 (100)
72 3ucg_A Polyadenylate-binding p 99.6 4.3E-15 1.5E-19 130.4 9.6 80 184-267 5-84 (89)
73 2dgw_A Probable RNA-binding pr 99.6 9.5E-15 3.2E-19 129.2 11.9 81 182-268 7-87 (91)
74 2cq1_A PTB-like protein L; RRM 99.6 1.5E-14 5.1E-19 132.2 13.2 80 182-270 12-93 (101)
75 1x4e_A RNA binding motif, sing 99.6 9.5E-16 3.3E-20 133.8 5.0 81 183-266 3-83 (85)
76 1wi8_A EIF-4B, eukaryotic tran 99.6 1.1E-14 3.7E-19 132.2 12.1 81 183-268 13-94 (104)
77 2cqg_A TDP-43, TAR DNA-binding 99.6 1.8E-14 6.2E-19 130.4 13.4 83 182-269 12-94 (103)
78 1wex_A Hypothetical protein (r 99.6 1E-14 3.4E-19 134.0 11.8 79 183-270 13-93 (104)
79 1x4a_A Splicing factor, argini 99.6 1.6E-14 5.5E-19 132.2 13.0 82 182-269 19-100 (109)
80 3n9u_C Cleavage and polyadenyl 99.6 4.4E-15 1.5E-19 145.9 9.6 82 184-268 54-137 (156)
81 2m2b_A RNA-binding protein 10; 99.6 1.9E-15 6.5E-20 143.4 6.8 85 180-268 18-108 (131)
82 3ex7_B RNA-binding protein 8A; 99.6 5.4E-15 1.8E-19 138.7 9.6 85 182-269 19-103 (126)
83 2cq4_A RNA binding motif prote 99.6 6.5E-15 2.2E-19 135.9 9.9 82 183-268 23-104 (114)
84 2a3j_A U1 small nuclear ribonu 99.6 5E-15 1.7E-19 140.9 9.3 81 183-269 27-111 (127)
85 2la4_A Nuclear and cytoplasmic 99.6 5.6E-15 1.9E-19 133.2 9.2 76 183-267 25-100 (101)
86 2wbr_A GW182, gawky, LD47780P; 99.6 6.9E-15 2.4E-19 131.0 9.5 74 184-266 6-79 (89)
87 2ek1_A RNA-binding protein 12; 99.6 3.3E-15 1.1E-19 132.9 7.5 83 182-267 12-94 (95)
88 1s79_A Lupus LA protein; RRM, 99.6 3E-15 1E-19 137.1 7.3 81 182-267 8-88 (103)
89 1p1t_A Cleavage stimulation fa 99.6 1.9E-15 6.4E-20 136.8 5.6 83 183-268 6-88 (104)
90 2kn4_A Immunoglobulin G-bindin 99.6 1.1E-14 3.7E-19 141.7 11.3 84 182-268 67-150 (158)
91 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.4E-14 4.8E-19 137.6 11.8 83 180-265 58-140 (140)
92 2kxn_B Transformer-2 protein h 99.6 6E-15 2E-19 140.3 9.2 84 182-268 43-126 (129)
93 2rs2_A Musashi-1, RNA-binding 99.6 1.4E-14 4.9E-19 133.3 11.3 83 182-268 22-104 (109)
94 2ki2_A SS-DNA binding protein 99.6 1.1E-15 3.7E-20 134.9 3.6 80 186-269 2-81 (90)
95 1whx_A Hypothetical protein ri 99.6 5.5E-15 1.9E-19 136.6 8.4 78 183-269 8-85 (111)
96 2dis_A Unnamed protein product 99.6 9.5E-15 3.3E-19 133.4 9.9 86 184-271 7-95 (109)
97 1x4g_A Nucleolysin TIAR; struc 99.6 1.6E-14 5.3E-19 132.4 11.4 79 182-269 22-100 (109)
98 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.8E-14 6.1E-19 140.3 12.3 84 183-269 37-120 (156)
99 2dgu_A Heterogeneous nuclear r 99.6 3E-14 1E-18 129.2 12.9 76 183-269 9-84 (103)
100 2fc9_A NCL protein; structure 99.6 3.3E-14 1.1E-18 128.2 13.1 81 182-269 12-92 (101)
101 1nu4_A U1A RNA binding domain; 99.5 7.2E-15 2.5E-19 131.2 8.5 80 183-268 6-89 (97)
102 1x4d_A Matrin 3; structural ge 99.5 1.2E-14 4E-19 133.3 10.1 76 184-268 14-92 (102)
103 2j76_E EIF-4B, EIF4B, eukaryot 99.5 4E-15 1.4E-19 134.5 6.7 82 182-268 16-98 (100)
104 2ad9_A Polypyrimidine tract-bi 99.5 1.4E-14 4.9E-19 136.3 10.7 80 182-270 28-109 (119)
105 1x4f_A Matrin 3; structural ge 99.5 9.3E-15 3.2E-19 136.2 9.2 80 181-269 21-103 (112)
106 1why_A Hypothetical protein ri 99.5 2.1E-14 7.2E-19 128.6 11.1 77 183-268 15-93 (97)
107 2nlw_A Eukaryotic translation 99.5 9.4E-15 3.2E-19 133.4 9.0 80 184-268 14-100 (105)
108 2cpj_A Non-POU domain-containi 99.5 2.7E-14 9.3E-19 128.4 11.8 79 182-269 12-90 (99)
109 2dnq_A RNA-binding protein 4B; 99.5 2.3E-14 7.7E-19 126.7 11.0 76 183-269 6-81 (90)
110 2mss_A Protein (musashi1); RNA 99.5 3.8E-15 1.3E-19 127.0 5.7 75 187-265 1-75 (75)
111 1x5o_A RNA binding motif, sing 99.5 3.3E-14 1.1E-18 131.0 12.4 82 182-267 22-111 (114)
112 1uaw_A Mouse-musashi-1; RNP-ty 99.5 4.4E-15 1.5E-19 126.8 5.7 76 186-265 1-76 (77)
113 2dnp_A RNA-binding protein 14; 99.5 2.6E-14 8.8E-19 126.4 10.8 76 182-268 6-81 (90)
114 2jvr_A Nucleolar protein 3; RN 99.5 1.2E-14 4.1E-19 135.2 9.0 80 182-268 25-105 (111)
115 2jwn_A Embryonic polyadenylate 99.5 1.6E-14 5.4E-19 135.1 9.6 81 184-268 35-115 (124)
116 1x4b_A Heterogeneous nuclear r 99.5 3E-14 1E-18 131.8 11.3 83 183-269 25-107 (116)
117 1rk8_A CG8781-PA, CG8781-PA pr 99.5 2.2E-14 7.6E-19 141.3 10.9 84 183-269 70-153 (165)
118 2xnq_A Nuclear polyadenylated 99.5 3.7E-14 1.3E-18 127.8 11.3 77 181-268 18-95 (97)
119 2e5j_A Methenyltetrahydrofolat 99.5 2.2E-14 7.7E-19 128.6 9.6 79 182-268 16-94 (97)
120 2lea_A Serine/arginine-rich sp 99.5 7E-15 2.4E-19 140.8 6.6 85 182-269 44-128 (135)
121 2cpy_A RNA-binding protein 12; 99.5 2.2E-14 7.4E-19 132.9 9.5 81 183-268 13-94 (114)
122 2jvo_A Nucleolar protein 3; nu 99.5 3.2E-14 1.1E-18 130.9 10.6 79 179-268 25-103 (108)
123 2cpd_A Apobec-1 stimulating pr 99.5 1.1E-13 3.6E-18 124.5 13.6 77 182-269 12-90 (99)
124 3lqv_A PRE-mRNA branch site pr 99.5 2.7E-14 9.2E-19 131.8 9.3 79 184-268 7-85 (115)
125 1x4c_A Splicing factor, argini 99.5 1.7E-13 5.7E-18 125.6 14.3 75 184-268 14-93 (108)
126 1wg5_A Heterogeneous nuclear r 99.5 6.3E-14 2.1E-18 127.7 11.4 82 183-269 13-95 (104)
127 2cqh_A IGF-II mRNA-binding pro 99.5 3.3E-14 1.1E-18 126.2 9.2 76 183-268 6-83 (93)
128 2krb_A Eukaryotic translation 99.5 1E-14 3.4E-19 126.6 5.4 72 186-262 2-80 (81)
129 2kvi_A Nuclear polyadenylated 99.5 2.6E-14 8.9E-19 128.1 8.1 76 183-269 8-84 (96)
130 2fc8_A NCL protein; structure 99.5 1.1E-13 3.8E-18 124.7 12.1 82 182-269 12-93 (102)
131 1x5p_A Negative elongation fac 99.5 2.4E-13 8.3E-18 121.8 14.0 76 183-269 13-88 (97)
132 2db1_A Heterogeneous nuclear r 99.5 4.9E-14 1.7E-18 131.6 9.7 81 183-268 15-98 (118)
133 2xs2_A Deleted in azoospermia- 99.5 1.9E-14 6.5E-19 130.0 6.5 82 182-269 6-87 (102)
134 1wel_A RNA-binding protein 12; 99.5 2E-14 7E-19 134.9 6.8 82 183-268 23-104 (124)
135 2hvz_A Splicing factor, argini 99.5 3.6E-14 1.2E-18 127.9 7.9 76 186-269 1-76 (101)
136 1fj7_A Nucleolin RBD1, protein 99.5 8.2E-15 2.8E-19 132.2 3.4 80 184-268 16-95 (101)
137 2cq2_A Hypothetical protein LO 99.5 4.5E-14 1.5E-18 132.0 8.4 77 184-269 24-107 (114)
138 2cpx_A Hypothetical protein FL 99.5 6.1E-14 2.1E-18 129.2 9.1 80 183-269 23-106 (115)
139 3q2s_C Cleavage and polyadenyl 99.5 2.8E-14 9.6E-19 148.6 7.5 82 184-268 67-150 (229)
140 1fjc_A Nucleolin RBD2, protein 99.5 7.7E-14 2.6E-18 124.4 9.2 79 182-268 13-91 (96)
141 1wg1_A KIAA1579 protein, homol 99.5 1.5E-13 5.3E-18 121.1 11.0 76 184-269 4-79 (88)
142 3egn_A RNA-binding protein 40; 99.5 1.9E-14 6.6E-19 138.1 5.4 85 184-268 44-130 (143)
143 3md3_A Nuclear and cytoplasmic 99.5 1.9E-13 6.6E-18 131.6 12.4 82 183-267 85-166 (166)
144 1wez_A HnRNP H', FTP-3, hetero 99.5 8.3E-14 2.8E-18 127.0 9.3 80 183-268 13-92 (102)
145 2lcw_A RNA-binding protein FUS 99.2 3.6E-15 1.2E-19 138.1 0.0 84 182-268 4-95 (116)
146 1wf1_A RNA-binding protein RAL 99.5 2E-13 6.7E-18 125.3 11.4 76 182-268 24-100 (110)
147 2hgl_A HNRPF protein, heteroge 99.5 6.3E-14 2.2E-18 134.8 8.3 81 182-267 41-124 (136)
148 2e5g_A U6 snRNA-specific termi 99.5 2E-13 7E-18 121.6 10.9 76 184-268 7-82 (94)
149 1iqt_A AUF1, heterogeneous nuc 99.5 1.9E-14 6.5E-19 122.4 3.9 75 187-265 1-75 (75)
150 2lmi_A GRSF-1, G-rich sequence 99.5 2.8E-14 9.7E-19 130.6 5.4 80 183-267 9-91 (107)
151 4f02_A Polyadenylate-binding p 99.5 1.3E-13 4.4E-18 140.8 10.8 81 184-267 14-94 (213)
152 2qfj_A FBP-interacting repress 99.5 1.3E-13 4.4E-18 139.2 10.6 83 184-269 124-206 (216)
153 2i2y_A Fusion protein consists 99.5 8.9E-14 3.1E-18 134.5 9.1 79 182-268 70-148 (150)
154 2dnn_A RNA-binding protein 12; 99.5 2.1E-13 7E-18 126.3 10.3 78 184-267 15-92 (109)
155 1fxl_A Paraneoplastic encephal 99.5 2.4E-13 8.1E-18 131.1 11.1 81 185-268 2-82 (167)
156 3d2w_A TAR DNA-binding protein 99.4 2.7E-13 9.3E-18 120.4 10.2 75 182-268 8-84 (89)
157 2f3j_A RNA and export factor b 99.4 1.2E-13 4.1E-18 138.3 8.9 83 183-269 86-168 (177)
158 1b7f_A Protein (SXL-lethal pro 99.4 2.3E-13 8E-18 131.7 10.2 81 185-268 3-83 (168)
159 2e44_A Insulin-like growth fac 99.4 2.1E-13 7.1E-18 121.6 8.9 78 184-268 14-92 (96)
160 3zzy_A Polypyrimidine tract-bi 99.4 3.6E-13 1.2E-17 128.6 11.0 77 185-269 28-107 (130)
161 3tyt_A Heterogeneous nuclear r 99.4 3.9E-13 1.3E-17 137.5 11.6 79 184-270 3-82 (205)
162 1sjr_A Polypyrimidine tract-bi 99.4 2.9E-13 9.8E-18 134.0 9.4 80 184-270 45-126 (164)
163 3pgw_S U1-70K; protein-RNA com 99.4 6.3E-13 2.2E-17 150.9 13.3 84 184-270 101-184 (437)
164 2e5i_A Heterogeneous nuclear r 99.4 9.1E-13 3.1E-17 124.9 11.9 76 186-270 26-104 (124)
165 2g4b_A Splicing factor U2AF 65 99.4 5.9E-13 2E-17 129.6 10.5 79 184-265 93-171 (172)
166 1l3k_A Heterogeneous nuclear r 99.4 6.1E-13 2.1E-17 132.2 10.4 83 182-268 10-92 (196)
167 2j8a_A Histone-lysine N-methyl 99.4 3.6E-13 1.2E-17 127.8 7.7 78 186-266 3-94 (136)
168 4f02_A Polyadenylate-binding p 99.4 6.8E-13 2.3E-17 135.5 10.4 80 184-268 102-181 (213)
169 2hzc_A Splicing factor U2AF 65 99.4 6.2E-13 2.1E-17 116.1 8.7 71 184-264 5-86 (87)
170 2bz2_A Negative elongation fac 99.4 6.1E-13 2.1E-17 125.0 9.2 76 183-269 37-112 (121)
171 2yh0_A Splicing factor U2AF 65 99.4 1.1E-12 3.6E-17 130.7 10.9 83 183-268 112-194 (198)
172 3pgw_A U1-A; protein-RNA compl 99.4 7.4E-12 2.5E-16 132.3 17.9 81 183-269 7-91 (282)
173 2dnl_A Cytoplasmic polyadenyla 99.4 8.8E-13 3E-17 122.0 9.2 80 184-266 7-86 (114)
174 3u1l_A PRE-mRNA-splicing facto 99.4 4.3E-13 1.5E-17 140.6 7.9 79 182-269 131-230 (240)
175 2cjk_A Nuclear polyadenylated 99.4 4.2E-13 1.4E-17 130.0 7.2 81 184-268 86-166 (167)
176 2diu_A KIAA0430 protein; struc 99.4 8.6E-13 2.9E-17 118.8 8.1 74 183-269 7-85 (96)
177 1wf0_A TDP-43, TAR DNA-binding 99.4 1E-12 3.4E-17 115.6 8.3 74 184-269 4-79 (88)
178 3md3_A Nuclear and cytoplasmic 99.4 1.6E-12 5.4E-17 125.2 10.4 79 186-268 1-79 (166)
179 2hgm_A HNRPF protein, heteroge 99.4 8.9E-13 3.1E-17 125.2 7.9 79 183-267 40-120 (126)
180 2hgn_A Heterogeneous nuclear r 99.4 2.7E-13 9.3E-18 130.9 4.3 80 183-268 44-123 (139)
181 1l3k_A Heterogeneous nuclear r 99.4 1.9E-12 6.4E-17 128.7 10.5 83 183-269 102-184 (196)
182 1b7f_A Protein (SXL-lethal pro 99.3 2.1E-12 7E-17 125.1 10.2 80 183-265 87-168 (168)
183 3beg_B Splicing factor, argini 99.3 1.4E-12 4.6E-17 121.2 8.2 74 184-267 15-93 (115)
184 2dha_A FLJ20171 protein; RRM d 99.3 8.1E-13 2.8E-17 125.0 6.5 79 184-267 22-104 (123)
185 2qfj_A FBP-interacting repress 99.3 1.5E-12 5.1E-17 131.4 8.8 81 184-267 27-107 (216)
186 2cjk_A Nuclear polyadenylated 99.3 2.4E-12 8.1E-17 124.7 9.0 79 184-267 2-80 (167)
187 1fxl_A Paraneoplastic encephal 99.3 2.6E-12 9E-17 123.8 8.8 79 184-265 87-167 (167)
188 1fje_B Nucleolin RBD12, protei 99.3 5.6E-12 1.9E-16 123.4 11.1 78 183-268 97-174 (175)
189 3nmr_A Cugbp ELAV-like family 99.3 2.9E-12 9.9E-17 124.6 9.0 79 183-265 93-174 (175)
190 3nmr_A Cugbp ELAV-like family 99.3 3.3E-12 1.1E-16 124.2 8.5 81 184-267 2-87 (175)
191 2voo_A Lupus LA protein; RNA-b 99.3 7.9E-12 2.7E-16 126.7 10.4 79 184-267 108-186 (193)
192 2pe8_A Splicing factor 45; RRM 99.3 1.5E-11 5E-16 113.1 10.6 82 184-267 7-93 (105)
193 3pgw_A U1-A; protein-RNA compl 99.3 1.2E-11 4.1E-16 130.7 11.5 78 181-266 203-281 (282)
194 2ghp_A U4/U6 snRNA-associated 99.3 7.9E-12 2.7E-16 132.8 10.0 83 182-268 207-291 (292)
195 3sde_A Paraspeckle component 1 99.2 1.7E-11 5.7E-16 129.1 10.9 76 183-267 20-95 (261)
196 3smz_A Protein raver-1, ribonu 99.2 2E-11 6.9E-16 129.1 11.6 82 184-268 94-175 (284)
197 3smz_A Protein raver-1, ribonu 99.2 1.7E-11 5.8E-16 129.7 10.8 82 183-268 182-264 (284)
198 1fje_B Nucleolin RBD12, protei 99.2 2.9E-12 9.9E-17 125.4 4.1 81 183-268 11-91 (175)
199 2adc_A Polypyrimidine tract-bi 99.2 9.7E-12 3.3E-16 128.3 8.0 80 182-269 31-111 (229)
200 1qm9_A Polypyrimidine tract-bi 99.2 1.4E-11 4.8E-16 123.3 8.9 79 182-268 117-197 (198)
201 1qm9_A Polypyrimidine tract-bi 99.2 6.4E-11 2.2E-15 118.5 13.3 77 185-269 3-80 (198)
202 2adc_A Polypyrimidine tract-bi 99.2 2.6E-11 8.8E-16 125.1 10.1 79 182-268 148-228 (229)
203 2g4b_A Splicing factor U2AF 65 99.2 3.3E-11 1.1E-15 117.2 9.9 75 184-268 3-88 (172)
204 2dit_A HIV TAT specific factor 99.2 8.1E-11 2.8E-15 108.6 11.7 79 183-268 13-102 (112)
205 2yh0_A Splicing factor U2AF 65 99.2 8.5E-11 2.9E-15 116.9 11.9 75 184-268 3-88 (198)
206 3tyt_A Heterogeneous nuclear r 99.2 3.7E-11 1.3E-15 122.8 7.7 78 183-265 121-204 (205)
207 3v4m_A Splicing factor U2AF 65 99.1 1.2E-10 4.1E-15 106.9 9.9 82 184-266 4-95 (105)
208 2dt7_B Splicing factor 3 subun 99.1 5.5E-12 1.9E-16 111.5 0.8 55 330-385 29-83 (85)
209 1jmt_A Splicing factor U2AF 35 99.1 2.2E-11 7.6E-16 111.5 4.9 73 189-265 19-103 (104)
210 2ghp_A U4/U6 snRNA-associated 99.1 9.5E-11 3.2E-15 124.4 9.2 80 185-268 117-197 (292)
211 3sde_A Paraspeckle component 1 99.1 1.3E-10 4.3E-15 122.4 9.1 80 185-268 96-179 (261)
212 3tht_A Alkylated DNA repair pr 99.1 1.2E-10 4.1E-15 128.1 7.8 78 183-269 16-100 (345)
213 2d9o_A DNAJ (HSP40) homolog, s 99.1 5.1E-10 1.8E-14 102.0 10.5 65 195-269 27-91 (100)
214 3ue2_A Poly(U)-binding-splicin 99.1 2.8E-10 9.6E-15 106.8 8.7 83 184-266 19-107 (118)
215 3clj_A Protein NRD1; CTD-inter 98.9 5.8E-10 2E-14 109.2 2.2 128 448-585 3-146 (157)
216 3s6e_A RNA-binding protein 39; 98.8 1.1E-08 3.8E-13 95.4 8.1 75 185-266 7-91 (114)
217 2dnr_A Synaptojanin-1; RRM dom 98.6 1.4E-07 4.9E-12 84.1 8.1 72 184-267 6-85 (91)
218 1owx_A Lupus LA protein, SS-B, 98.6 1.5E-07 5.1E-12 88.6 8.6 73 183-264 16-92 (121)
219 1x4p_A Putative splicing facto 98.5 5.6E-09 1.9E-13 85.8 -2.3 54 330-385 5-58 (66)
220 3dxb_A Thioredoxin N-terminall 98.3 4.9E-07 1.7E-11 92.5 6.7 68 198-265 142-210 (222)
221 1ufw_A Synaptojanin 2; RNP dom 98.2 9.9E-07 3.4E-11 79.2 5.5 69 184-264 14-91 (95)
222 4dgw_B PRE-mRNA-splicing facto 98.0 1.2E-06 4.2E-11 85.1 1.9 51 331-384 6-56 (152)
223 1wey_A Calcipressin 1; structu 97.7 0.00019 6.4E-09 65.5 9.7 78 185-271 5-87 (104)
224 2e62_A Protein AT5G25060; CWF2 97.5 7.9E-06 2.7E-10 66.9 -2.0 25 814-838 5-29 (61)
225 2l9w_A U4/U6 snRNA-associated- 97.3 0.00077 2.6E-08 62.0 9.0 70 185-263 21-95 (117)
226 2dhx_A Poly (ADP-ribose) polym 95.2 0.066 2.3E-06 48.7 8.6 68 184-263 7-79 (104)
227 1uw4_A UPF3X; nonsense mediate 94.7 0.22 7.5E-06 44.3 10.4 69 186-256 2-71 (91)
228 1wwh_A Nucleoporin 35, nucleop 94.6 0.11 3.9E-06 48.4 8.5 70 184-264 23-93 (119)
229 1h1j_S THO1 protein; SAP domai 94.2 0.05 1.7E-06 43.3 4.5 40 636-675 4-43 (51)
230 1whv_A Poly(A)-specific ribonu 94.0 0.058 2E-06 48.6 5.0 58 183-251 13-70 (100)
231 3ctr_A Poly(A)-specific ribonu 92.8 0.098 3.3E-06 47.3 4.5 54 187-251 7-60 (101)
232 2kvu_A MKL/myocardin-like prot 92.4 0.11 3.8E-06 44.5 4.1 39 636-674 25-63 (75)
233 2do1_A Nuclear protein HCC-1; 92.4 0.12 4.1E-06 41.8 4.1 38 637-674 10-47 (55)
234 1zrj_A E1B-55KDA-associated pr 91.8 0.2 6.7E-06 39.8 4.6 36 636-671 9-44 (50)
235 3p3d_A Nucleoporin 53; structu 88.8 0.38 1.3E-05 45.6 4.6 78 186-265 8-96 (132)
236 2i2y_A Fusion protein consists 85.9 0.21 7E-06 47.3 1.0 39 228-267 11-50 (150)
237 2rnn_A E3 SUMO-protein ligase 85.0 0.9 3.1E-05 42.0 4.7 39 634-672 34-72 (114)
238 2kn4_A Immunoglobulin G-bindin 84.5 0.58 2E-05 44.4 3.4 36 214-254 2-37 (158)
239 3pq1_A Poly(A) RNA polymerase; 83.3 0.56 1.9E-05 53.3 3.2 53 186-247 54-106 (464)
240 2l08_A Regulator of nonsense t 82.8 1.7 5.8E-05 39.1 5.5 70 185-256 9-79 (97)
241 1jjr_A KU70, thyroid autoantig 68.6 3.2 0.00011 40.1 3.5 36 635-670 59-94 (151)
242 3d45_A Poly(A)-specific ribonu 61.8 18 0.00061 41.5 8.6 56 185-252 440-495 (507)
243 4f25_A Polyadenylate-binding p 41.6 5.5 0.00019 35.7 0.0 19 183-201 95-113 (115)
244 1jjr_A KU70, thyroid autoantig 29.5 11 0.00039 36.4 0.0 35 636-670 114-148 (151)
245 2rno_A Putative DNA-binding pr 28.3 67 0.0023 28.9 4.7 37 635-671 15-51 (110)
246 1x5b_A Signal transducing adap 27.1 1E+02 0.0035 29.7 6.4 74 477-569 48-126 (163)
247 3skq_A Mitochondrial distribut 20.3 94 0.0032 32.3 4.8 39 637-675 144-184 (249)
No 1
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=99.93 E-value=2.7e-26 Score=222.76 Aligned_cols=130 Identities=17% Similarity=0.304 Sum_probs=119.1
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHhhccccHHHHHHHHHHHhhccCCCcccceeeeeeeehhcccCCCCCCChhhhHHH
Q 003204 448 RDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTK 527 (839)
Q Consensus 448 r~~l~~lL~~Lt~tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhNs~~~v~na~~yR~~ 527 (839)
.+.|..+|+.|+.|++||+++|.|||+|..+|.+||++|.++|....++..+||++|||+|||||||. +++++.|+.+
T Consensus 5 ~~~l~~kL~~L~~sq~sIq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk--~k~~~~f~~~ 82 (142)
T 2km4_A 5 SEQFTTKLNTLEDSQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAK--GQKIIQFQDS 82 (142)
T ss_dssp HHHHHHHHHTCCSCHHHHHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHG--GGTCCHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHh--hcCchHHHHH
Confidence 47899999999999999999999999999999999999999999987788999999999999999994 5678899999
Q ss_pred HHHhhHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhhccCccCcHHHHHHHHHHhccC
Q 003204 528 FEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRS 587 (839)
Q Consensus 528 fe~~Lp~IF~~l~~~y~~~~~ri~ae~~k~kV~~vL~iWe~~~vfp~~~l~~L~~~fl~~ 587 (839)
|+++||.+|.++. ... .+..+++|++||++|++|.||++++|..|++.+.+.
T Consensus 83 F~~~L~~~~~~~~---~~~-----~~~~~~kv~rvl~iWeer~vf~~~~i~~L~~~l~~~ 134 (142)
T 2km4_A 83 FGKVAAEVLGRIN---QEF-----PRDLKKKLSRVVNILKERNIFSKQVVNDIERSLAAA 134 (142)
T ss_dssp HHHTHHHHHHHHH---HHS-----CHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HcC-----CHHHHHHHHHHHHHhhccCCcCHHHHHHHHHHHHhH
Confidence 9999999998664 322 478899999999999999999999999999998653
No 2
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=99.91 E-value=9.2e-26 Score=216.66 Aligned_cols=128 Identities=20% Similarity=0.383 Sum_probs=113.3
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHhhccccHHHHHHHHHHHhhccCCCcccceeeeeeeehhcccCCCCCCChhhhHH
Q 003204 447 QRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRT 526 (839)
Q Consensus 447 ~r~~l~~lL~~Lt~tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhNs~~~v~na~~yR~ 526 (839)
..+.|+.+|+.||++|++|+++|.|||+|..+|.+||++|.++|... +..+||++|||||||||||. ++++.|+.
T Consensus 5 ~~~~l~~~L~~L~~s~~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~--~~~~KL~~LYLindIl~ns~---~~~~~y~~ 79 (135)
T 4fu3_A 5 SESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKA--KSNRKLTFLYLANDVIQNSK---RKGPEFTR 79 (135)
T ss_dssp CHHHHHHHHHHCCSSTTHHHHHHHHHHHTGGGHHHHHHHHHHHHHHS--CTTTHHHHHHHHHHHHHHHT---TTCSHHHH
T ss_pred CHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHH---hcCHHHHH
Confidence 35789999999999999999999999999999999999999999765 45899999999999999994 45688999
Q ss_pred HHHHhhHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhhccCccCcHHHHHHHHHHhccC
Q 003204 527 KFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRS 587 (839)
Q Consensus 527 ~fe~~Lp~IF~~l~~~y~~~~~ri~ae~~k~kV~~vL~iWe~~~vfp~~~l~~L~~~fl~~ 587 (839)
.|+.+||.+|.++.. . ..+.++++|.+||++|++|.|||+++|.+|+..|.+.
T Consensus 80 ~f~~~l~~~~~~~~~---~-----~~~~~k~kl~kll~iW~~r~vf~~~~i~~L~~~l~~~ 132 (135)
T 4fu3_A 80 EFESVLVDAFSHVAR---E-----ADEGCKKPLERLLNIWQERSVYGGEFIQQLKLSMEDS 132 (135)
T ss_dssp HHHTTHHHHHHHHHH---H-----HHTTSSHHHHHHHHHHHHTTSSCHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHH---c-----CCHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhCC
Confidence 999999999997642 2 3456789999999999999999999999999998654
No 3
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=99.91 E-value=6.1e-25 Score=210.35 Aligned_cols=126 Identities=18% Similarity=0.366 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHhhccccHHHHHHHHHHHhhccCCCcccceeeeeeeehhcccCCCCCCChhhhH
Q 003204 446 SQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYR 525 (839)
Q Consensus 446 ~~r~~l~~lL~~Lt~tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhNs~~~v~na~~yR 525 (839)
...+.|+.+|+.|+++++||+++|.|||+|..+|.+||++|.+.|... +.++||++|||+||||||| ++++++.|+
T Consensus 5 ~~e~~l~~~L~~L~~s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~--~~~~KL~~LYL~ndIl~ns--~~~~~~~f~ 80 (132)
T 4flb_A 5 ALESSLDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRS--AYPHRLNLFYLANDVIQNC--KRKNAIIFR 80 (132)
T ss_dssp HHHHHHHHHHHHCCSSHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHT--TTTTCTHHH
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--ChhhHHHHHHHHHHHHHHh--cccChHHHH
Confidence 456789999999999999999999999999999999999999998754 6899999999999999999 467889999
Q ss_pred HHHHHhhHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhhccCccCcHHHHHHHHHHhcc
Q 003204 526 TKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLR 586 (839)
Q Consensus 526 ~~fe~~Lp~IF~~l~~~y~~~~~ri~ae~~k~kV~~vL~iWe~~~vfp~~~l~~L~~~fl~ 586 (839)
..|+++||.+|.++ ..++++++|.+||++|++|.|||+++|.+|+..+..
T Consensus 81 ~~f~~~l~~~~~~~-----------~~~~~~~kl~~ll~iW~~r~vf~~~~i~~L~~~L~~ 130 (132)
T 4flb_A 81 ESFADVLPEAAALV-----------KDPSVSKSVERIFKIWEDRNVYPEEMIVALREALST 130 (132)
T ss_dssp HHHHTTHHHHHHTT-----------CSTTTHHHHHHHHHHHHHHTSSCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHhc
Confidence 99999999998853 246789999999999999999999999999998753
No 4
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=99.81 E-value=2.1e-21 Score=169.45 Aligned_cols=72 Identities=29% Similarity=0.527 Sum_probs=67.8
Q ss_pred CceeccCCCchhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCcccccccCCCCCcceeeEEEeeeccCCcc
Q 003204 320 PDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTL 391 (839)
Q Consensus 320 ~~v~v~~P~D~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~Np~F~FL~d~~s~~h~YYrwrl~s~~~gd~~ 391 (839)
+++.|.||+|++++.+||+||.||+++|++||++||+++++||+|+||++..+++|.||||+|+++.+|+..
T Consensus 5 ~~~~v~pP~d~~~~~iIdktA~fVaknG~~fE~~l~~~~~~Np~F~FL~d~~~~~h~YYr~kl~e~~~g~~~ 76 (78)
T 1x4o_A 5 SSGKVSPPEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKLDEFRKSGPS 76 (78)
T ss_dssp CCSCSCCCSCHHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHCSSTTTTTCSSSSHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCcCcCCHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCCCCCCeecCCCCCCCcHHHHHHHHHHHhcCCC
Confidence 447789999999999999999999999999999999999999999999999999999999999999998653
No 5
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1
Probab=99.78 E-value=8.3e-21 Score=169.24 Aligned_cols=71 Identities=35% Similarity=0.604 Sum_probs=67.3
Q ss_pred ceeccCCCchhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCcccccccCCCCCcceeeEEEeeeccCCcc
Q 003204 321 DIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTL 391 (839)
Q Consensus 321 ~v~v~~P~D~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~Np~F~FL~d~~s~~h~YYrwrl~s~~~gd~~ 391 (839)
.|.|.||.|+.++.+||+||.||+++|++||++||+++++||+|+||++..+++|.||||||+++.+|++.
T Consensus 16 ~v~v~pP~d~~~~~iIdktA~fVaknG~~FE~~l~~~e~~NpkF~FL~~~~~~~h~YYr~kl~e~~~g~~~ 86 (88)
T 1ug0_A 16 EIKVSPPEGAETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYYRRKVAEIRKSGPS 86 (88)
T ss_dssp TSCCSSGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCSSSHHHHCSSCHHHHHHHHHHHHHHHSCCS
T ss_pred eeeeCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCCCCCCeecCCCCCCCcHHHHHHHHHHHccCCC
Confidence 37788999999999999999999999999999999999999999999987999999999999999998764
No 6
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=99.75 E-value=2.4e-18 Score=167.27 Aligned_cols=126 Identities=16% Similarity=0.303 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHhhc-cchHHHHHHHHHHhhccccHHHHHHHHHHHhhccCCCcccceeeeeeeehhcccCCCCCCChhhh
Q 003204 446 SQRDEFEDMLRALT-LERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAY 524 (839)
Q Consensus 446 ~~r~~l~~lL~~Lt-~tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhNs~~~v~na~~y 524 (839)
+..+.|...|..|+ .+|.+|..++.||++|..+|..||++|.+++.. ++..+||..|||++||++||. ..|
T Consensus 7 ~~~~~f~~~L~~L~~nSk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k--~~p~~KL~~LYL~DsIvkN~g------~~y 78 (144)
T 1sz9_A 7 VIVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEK--CMPKQKLYAFYALDSICKNVG------SPY 78 (144)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHTC------TTH
T ss_pred HHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCHhhHHHHHHHHHHHHHhcc------chH
Confidence 45678999999998 999999999999999999999999999999975 578999999999999999985 359
Q ss_pred HHHHHHhhHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhhccC-----ccCcHHHHHHHHHHhccC
Q 003204 525 RTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDW-----FLFSDAYVNGLRATFLRS 587 (839)
Q Consensus 525 R~~fe~~Lp~IF~~l~~~y~~~~~ri~ae~~k~kV~~vL~iWe~~-----~vfp~~~l~~L~~~fl~~ 587 (839)
...|+..|+.+|.+ +|..+ .+..|.+|.+||++|++| .|||+++|..|++.+...
T Consensus 79 ~~~F~~~l~~~f~~---~~~~~-----d~~~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l~~a 138 (144)
T 1sz9_A 79 TIYFSRNLFNLYKR---TYLLV-----DNTTRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFLIKA 138 (144)
T ss_dssp HHHHHTTHHHHHHH---HHHTS-----CHHHHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH---HHHhC-----CHHHHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHHHhh
Confidence 99999999999996 45443 478999999999999999 999999999999987643
No 7
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.74 E-value=4.2e-18 Score=154.69 Aligned_cols=82 Identities=22% Similarity=0.403 Sum_probs=77.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
..+|+|||+|||+++|+++|+++|++||.|.+|+|++ +..+|+++|||||.|.+.++|++|+..|||..++|++|+|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~---d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V 93 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIR---DKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKV 93 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE---CSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeee---cCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3578999999999999999999999999999999994 6678999999999999999999999999999999999999
Q ss_pred EeecC
Q 003204 263 GWGKS 267 (839)
Q Consensus 263 ~~ak~ 267 (839)
.||+|
T Consensus 94 ~~AkP 98 (99)
T 4fxv_A 94 SYARP 98 (99)
T ss_dssp EECCB
T ss_pred EEeeC
Confidence 99985
No 8
>2e60_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=4.8e-18 Score=154.93 Aligned_cols=69 Identities=22% Similarity=0.341 Sum_probs=64.0
Q ss_pred eeccCCCchhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCcccccccCCCCCcceeeEEEeeeccCCcc
Q 003204 322 IMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTL 391 (839)
Q Consensus 322 v~v~~P~D~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~Np~F~FL~d~~s~~h~YYrwrl~s~~~gd~~ 391 (839)
..|++|+|.+++.+|++||.||+++|++||++||+|+++||+|+||+ .+|++|.||+|+|+++.+|+..
T Consensus 17 ~~v~~P~~~~~~~iI~ktA~fVarnG~~FE~~l~~re~~Np~F~FL~-~~~~~h~YY~~kl~~~~~g~~~ 85 (101)
T 2e60_A 17 SDVELPPTAKMHAIIERTASFVCRQGAQFEIMLKAKQARNSQFDFLR-FDHYLNPYYKFIQKAMKEGRYT 85 (101)
T ss_dssp SSSCCCSSHHHHHHHHHHHHHHHHSCHHHHHHHHHHTTSCSTTGGGS-TTSTHHHHHHHHHHHHHHTSCC
T ss_pred CCccCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHccccCCCCccCC-CCCCCcHHHHHHHHHHHcCCCC
Confidence 45678889999999999999999999999999999999999999995 7999999999999999988653
No 9
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=146.99 Aligned_cols=83 Identities=14% Similarity=0.221 Sum_probs=77.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
.+..++|||+|||+++|+++|+++|++||.|.+|+|++ +..+|+++|||||.|.+.++|++|+..|||..++|+.|+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~---d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~ 79 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILL---HPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIH 79 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEE---CCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34578999999999999999999999999999999994 777899999999999999999999999999999999999
Q ss_pred EEeecC
Q 003204 262 IGWGKS 267 (839)
Q Consensus 262 V~~ak~ 267 (839)
|.|+..
T Consensus 80 V~~a~~ 85 (110)
T 3s8s_A 80 AQLDIK 85 (110)
T ss_dssp EEECST
T ss_pred EEECCC
Confidence 999764
No 10
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.66 E-value=8.1e-16 Score=142.02 Aligned_cols=86 Identities=22% Similarity=0.500 Sum_probs=79.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Q 003204 181 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (839)
Q Consensus 181 ~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~I 260 (839)
.....++|||+|||+.+|+++|+++|++||.|.+|+|++ +..+|+++|||||.|.+.++|++|+..|||..++|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVK---DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 344678999999999999999999999999999999994 55678899999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 003204 261 KIGWGKSVA 269 (839)
Q Consensus 261 kV~~ak~~~ 269 (839)
+|.|+++..
T Consensus 88 ~V~~a~~~~ 96 (115)
T 2dgo_A 88 RTNWATRKP 96 (115)
T ss_dssp EEEESSCCC
T ss_pred EEEEccCCC
Confidence 999998764
No 11
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.4e-16 Score=137.77 Aligned_cols=83 Identities=22% Similarity=0.466 Sum_probs=77.2
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Q 003204 181 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (839)
Q Consensus 181 ~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~I 260 (839)
..+..++|||+|||+.+++++|+++|++||.|.+|+|+. +..++++++||||.|.+.++|++|+..|||..++|++|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMK---DKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECC---CSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEe---CCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 345678999999999999999999999999999999984 56678899999999999999999999999999999999
Q ss_pred EEEeec
Q 003204 261 KIGWGK 266 (839)
Q Consensus 261 kV~~ak 266 (839)
+|.|||
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999986
No 12
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1e-17 Score=149.01 Aligned_cols=59 Identities=29% Similarity=0.444 Sum_probs=55.2
Q ss_pred hhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCcccccccCCCCCcceeeEEEeeeccCCcc
Q 003204 330 RHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTL 391 (839)
Q Consensus 330 ~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~Np~F~FL~d~~s~~h~YYrwrl~s~~~gd~~ 391 (839)
++++.+||+||+||+++|++||++||++ +||+|+||+. ++++|.||+|||+++.+|+..
T Consensus 22 pdir~iIdktA~fVaknG~~FE~~i~~k--~np~F~FL~~-~~pyh~YY~~kl~e~~~~~~~ 80 (90)
T 2e5z_A 22 PDVQPVIDKLAEYVARNGLKFETSVRAK--NDQRFEFLQP-WHQYNAYYEFKKQFFLQKEGG 80 (90)
T ss_dssp TTTHHHHHHHHHHHHHSCHHHHHHHHHH--CCGGGCTTSS-SCSTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHh--CCCCceeCCC-CCcccHHHHHHHHHHHhccCC
Confidence 6799999999999999999999999987 8999999995 899999999999999988764
No 13
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.66 E-value=3.9e-16 Score=135.37 Aligned_cols=81 Identities=36% Similarity=0.625 Sum_probs=76.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
+++|||+|||+++++++|+++|++||.|.+|+|++ +..+|+++|||||.|.+.++|++|+..|||..++|++|+|.|
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~---~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 77 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMW---DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 77 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEE---CTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEE---cCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEe
Confidence 47999999999999999999999999999999984 556788999999999999999999999999999999999999
Q ss_pred ecCC
Q 003204 265 GKSV 268 (839)
Q Consensus 265 ak~~ 268 (839)
+++.
T Consensus 78 a~~~ 81 (83)
T 3md1_A 78 AAKL 81 (83)
T ss_dssp CCCC
T ss_pred cCcC
Confidence 8864
No 14
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.65 E-value=3e-16 Score=145.76 Aligned_cols=80 Identities=28% Similarity=0.509 Sum_probs=73.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..++|||||||+++|+++|+++|++||.|.+|+|++ + .+.++|||||.|.+.++|++|+..|||..|+|+.|+|.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~---d--~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~ 78 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---D--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 78 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---E--TTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEee---c--CCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 357999999999999999999999999999999994 3 23478999999999999999999999999999999999
Q ss_pred eecCC
Q 003204 264 WGKSV 268 (839)
Q Consensus 264 ~ak~~ 268 (839)
|+++.
T Consensus 79 ~a~~~ 83 (115)
T 4f25_A 79 RFKSR 83 (115)
T ss_dssp ESSCC
T ss_pred ECCCc
Confidence 98764
No 15
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.65 E-value=4.1e-16 Score=136.43 Aligned_cols=82 Identities=23% Similarity=0.527 Sum_probs=75.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..++|||+|||+++++++|+++|++||.|.+|+|++ +..+|+++|||||.|.+.++|++|+..|||..++|+.|+|.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVK---DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 81 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 468999999999999999999999999999999994 55678899999999999999999999999999999999999
Q ss_pred eecCC
Q 003204 264 WGKSV 268 (839)
Q Consensus 264 ~ak~~ 268 (839)
|+++.
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 99865
No 16
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.64 E-value=4.7e-16 Score=135.44 Aligned_cols=81 Identities=30% Similarity=0.496 Sum_probs=76.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
+..++|||+|||+.+++++|+++|++||.|.+|+|++ +..+|+++|||||.|.+.++|.+|+..|||..++|++|+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 81 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPL---DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 81 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCE---ETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEE---CCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4578999999999999999999999999999999984 5567889999999999999999999999999999999999
Q ss_pred Eeec
Q 003204 263 GWGK 266 (839)
Q Consensus 263 ~~ak 266 (839)
.|+|
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9986
No 17
>2dt6_A Splicing factor 3 subunit 1; structure genomics, SF3A120, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=99.64 E-value=1.4e-17 Score=140.07 Aligned_cols=60 Identities=32% Similarity=0.567 Sum_probs=56.7
Q ss_pred hhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCcccccccCCCCCcceeeEEEeeeccCCcc
Q 003204 331 HLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTL 391 (839)
Q Consensus 331 ~~~~~Idk~a~~V~~~G~~FE~~l~~re~~Np~F~FL~d~~s~~h~YYrwrl~s~~~gd~~ 391 (839)
+++.+||+||.||+++|++||++||+++++||+|+||++ .+++|.||+|+|+++.+|+..
T Consensus 2 ~i~~iI~ktA~fVarnG~~fE~~l~~~e~~np~F~FL~~-~~~~h~YY~~~l~~~~~g~~~ 61 (64)
T 2dt6_A 2 EVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNP-NDPYHAYYRHKVSEFKEGKAQ 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHCTHHHHHHHHHSTTCGGGGGGST-TSTTHHHHHHHHHHHHHTCSC
T ss_pred hHHHHHHHHHHHHHHcCHHHHHHHHHhccCCCCcccCCC-CCCCchHHHHHHHHHHcCCCC
Confidence 578999999999999999999999999999999999985 899999999999999998764
No 18
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.64 E-value=1.5e-16 Score=142.03 Aligned_cols=82 Identities=13% Similarity=0.229 Sum_probs=74.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhC-CCEECCeEEEE
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ-GVVVYEYELKI 262 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG-~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~ln-G~~i~Gr~IkV 262 (839)
+++|||+|||+++|+++|+++|++|| .|.+|+|++ +..+|+++|||||.|.+.++|.+|+..|+ +..++|++|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~---d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V 77 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMR---NKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSM 77 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSS---CSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEe---cCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEE
Confidence 36899999999999999999999999 799999994 77789999999999999999999998874 56799999999
Q ss_pred EeecCCC
Q 003204 263 GWGKSVA 269 (839)
Q Consensus 263 ~~ak~~~ 269 (839)
.||++.+
T Consensus 78 ~~a~~~~ 84 (91)
T 2lxi_A 78 HYSDPKP 84 (91)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 9988653
No 19
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.1e-15 Score=137.34 Aligned_cols=84 Identities=23% Similarity=0.306 Sum_probs=78.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
...++|||+|||+.+|+++|+++|++||.|.+|+|++ +..+|+++|||||.|.+.++|.+|+..|||..++|+.|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPI---DSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 82 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCC---CTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEe---cCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3568999999999999999999999999999999984 5567899999999999999999999999999999999999
Q ss_pred EeecCCC
Q 003204 263 GWGKSVA 269 (839)
Q Consensus 263 ~~ak~~~ 269 (839)
.|+++..
T Consensus 83 ~~a~~~~ 89 (99)
T 1whw_A 83 LPSTIKK 89 (99)
T ss_dssp EECCCCS
T ss_pred EEcCCCc
Confidence 9998764
No 20
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=7e-16 Score=138.28 Aligned_cols=87 Identities=22% Similarity=0.317 Sum_probs=77.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
+..++|||+|||+++|+++|+++|++||.|.+|+|+..+....+++++|||||.|.+.++|++|+..|||..++|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 35689999999999999999999999999999999952221125588999999999999999999999999999999999
Q ss_pred EeecCCC
Q 003204 263 GWGKSVA 269 (839)
Q Consensus 263 ~~ak~~~ 269 (839)
.|+++..
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9988754
No 21
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1e-15 Score=138.16 Aligned_cols=84 Identities=29% Similarity=0.484 Sum_probs=78.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
+..++|||+|||+.+|+++|+++|++||.|.+|+|+. +..+++++|||||.|.+.++|++|+..|||..++|+.|+|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPL---DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCC---CSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEe---cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4578999999999999999999999999999999984 5667889999999999999999999999999999999999
Q ss_pred EeecCCC
Q 003204 263 GWGKSVA 269 (839)
Q Consensus 263 ~~ak~~~ 269 (839)
.|+++..
T Consensus 87 ~~a~~~~ 93 (102)
T 2cqb_A 87 NLAKPMR 93 (102)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9998764
No 22
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=136.66 Aligned_cols=83 Identities=19% Similarity=0.427 Sum_probs=77.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
...++|||+|||+.+|+++|+++|++||.|.+|+|++ +..+|+++|||||.|.+.++|.+|+. |||..++|+.|+|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIY---DAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECC---CTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---CCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 4568999999999999999999999999999999994 66678899999999999999999997 9999999999999
Q ss_pred EeecCCC
Q 003204 263 GWGKSVA 269 (839)
Q Consensus 263 ~~ak~~~ 269 (839)
.|+++..
T Consensus 84 ~~a~~~~ 90 (99)
T 2dgs_A 84 KRAEPRD 90 (99)
T ss_dssp EECCCCC
T ss_pred EECCCCc
Confidence 9988653
No 23
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.63 E-value=4.4e-16 Score=140.78 Aligned_cols=81 Identities=11% Similarity=0.339 Sum_probs=74.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCC--eeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCC----EECC
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGP--IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV----VVYE 257 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~--I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~----~i~G 257 (839)
.-.||||+|||+.+|+++|+++|++||. |.+|+|++ |+.+|++||||||.|.+.++|++|+..|||. .++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~---d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIK---DKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCC---CSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEe---cCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3468999999999999999999999995 67899984 7788999999999999999999999999997 5999
Q ss_pred eEEEEEeecC
Q 003204 258 YELKIGWGKS 267 (839)
Q Consensus 258 r~IkV~~ak~ 267 (839)
++|+|.||++
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999985
No 24
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.4e-15 Score=139.15 Aligned_cols=87 Identities=22% Similarity=0.368 Sum_probs=79.2
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Q 003204 181 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (839)
Q Consensus 181 ~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~I 260 (839)
.+...++|||+|||+.+|+++|+++|++||.|.+|+|+. +..++++++||||.|.+.++|++|+..|++ .+.|+.|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVIT---DRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESC---CSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEE---cCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 355679999999999999999999999999999999994 666789999999999999999999999998 8999999
Q ss_pred EEEeecCCCCC
Q 003204 261 KIGWGKSVALP 271 (839)
Q Consensus 261 kV~~ak~~~~p 271 (839)
+|.|+++...|
T Consensus 89 ~V~~a~~~~~~ 99 (116)
T 2cqd_A 89 NVNLAYLGAKP 99 (116)
T ss_dssp EEEESTTTCCC
T ss_pred EEEEcccCCCc
Confidence 99999876443
No 25
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-15 Score=137.44 Aligned_cols=85 Identities=22% Similarity=0.379 Sum_probs=78.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
....++|||+|||+.+|+++|+++|++||.|.+|+|+. +..+|+++|||||.|.+.++|.+|+..|||..++|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAK---DKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEE---CSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEee---cCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 44579999999999999999999999999999999994 556788999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 003204 262 IGWGKSVA 269 (839)
Q Consensus 262 V~~ak~~~ 269 (839)
|.|+++..
T Consensus 89 v~~a~~~~ 96 (103)
T 2cq0_A 89 VEWAKPST 96 (103)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 99988653
No 26
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=135.57 Aligned_cols=84 Identities=23% Similarity=0.467 Sum_probs=78.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
+..++|||+|||+.+|+++|+++|++||.|.+|+|+. +..+++++|||||.|.+.++|.+|+..|||..++|++|+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 79 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMK---DSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 79 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEC---CSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEee---cCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 3568999999999999999999999999999999994 5667899999999999999999999999999999999999
Q ss_pred EeecCCC
Q 003204 263 GWGKSVA 269 (839)
Q Consensus 263 ~~ak~~~ 269 (839)
.|+++..
T Consensus 80 ~~a~~~~ 86 (95)
T 2dnz_A 80 GHVTERL 86 (95)
T ss_dssp EESSCCC
T ss_pred EEccccc
Confidence 9988653
No 27
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=135.33 Aligned_cols=83 Identities=30% Similarity=0.434 Sum_probs=77.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
.+..++|||+|||+.+++++|+++|++||.|..|+|++ +..+|+++|||||.|.+.++|.+|+..|||..++|++|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVY---DQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEE---CSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEE---cCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44578999999999999999999999999999999994 666788999999999999999999999999999999999
Q ss_pred EEeecC
Q 003204 262 IGWGKS 267 (839)
Q Consensus 262 V~~ak~ 267 (839)
|.|++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999874
No 28
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.63 E-value=1.9e-15 Score=139.63 Aligned_cols=86 Identities=27% Similarity=0.438 Sum_probs=79.3
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Q 003204 181 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (839)
Q Consensus 181 ~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~I 260 (839)
..+..++|||+|||+++++++|+++|++||.|.+|+|++ +..+++++|||||.|.+.++|++|+..|||..|+|+.|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFI---DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEE---CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 345678999999999999999999999999999999994 55678999999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 003204 261 KIGWGKSVA 269 (839)
Q Consensus 261 kV~~ak~~~ 269 (839)
+|.|+++..
T Consensus 98 ~V~~a~~~~ 106 (115)
T 2cpz_A 98 KVQLKRSKN 106 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEEcCCCC
Confidence 999988653
No 29
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=99.63 E-value=1.9e-16 Score=154.09 Aligned_cols=130 Identities=15% Similarity=0.288 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhh-----ccchHHHHHHHHHHhhccccHHHHHHHHHHHhhccCCCcccceeeeeeeehhcccCCCCC-CC
Q 003204 447 QRDEFEDMLRAL-----TLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPV-KN 520 (839)
Q Consensus 447 ~r~~l~~lL~~L-----t~tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhNs~~~v-~n 520 (839)
..+.|+..|..| ..++.+|..++.||++|..++..||++|.+.+... +..+||..|||+|||++|+..+. ..
T Consensus 3 ~v~~f~~~L~~L~~~k~~~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~--~~~~KL~~LYL~DsIvrn~~~k~~~~ 80 (145)
T 3d9j_A 3 AVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKC--KPEYKVPGLYVIDSIVRQSRHQFGQE 80 (145)
T ss_dssp HHHHHHHHHHGGGGSCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHS--CGGGHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CccceeehhhhhHHHHHHhhhhcCCc
Confidence 467899999999 34779999999999999999999999999999775 68999999999999999995211 01
Q ss_pred hhhhHHHHHHhhHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhhccCccCcHHHHHHHHHHhccC
Q 003204 521 ASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRS 587 (839)
Q Consensus 521 a~~yR~~fe~~Lp~IF~~l~~~y~~~~~ri~ae~~k~kV~~vL~iWe~~~vfp~~~l~~L~~~fl~~ 587 (839)
...|...|...|+.+|.+ +|. + .+..|.+|.+||++|+++.|||+++|..|+..+.++
T Consensus 81 ~~~f~~~F~~~L~~~f~~---~~~-~-----~~~~r~kl~rLl~iW~~r~vF~~~~l~~l~~~l~~~ 138 (145)
T 3d9j_A 81 KDVFAPRFSNNIISTFQN---LYR-C-----PGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAAL 138 (145)
T ss_dssp TCSHHHHHHHHHHHHHHH---HTS-S-----CGGGHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHHHH---HHh-C-----CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCc
Confidence 237999999999999974 342 1 267899999999999999999999999999988643
No 30
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.63 E-value=2.7e-15 Score=139.14 Aligned_cols=84 Identities=29% Similarity=0.408 Sum_probs=77.4
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeE
Q 003204 180 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (839)
Q Consensus 180 ~~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~ 259 (839)
...+..++|||+|||+++++++|+++|++||.|.+|+|++ +..+|+++|||||.|.+.++|++|+..|||..++|+.
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 111 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFI---DKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKR 111 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECC---CSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---CCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3455679999999999999999999999999999999994 5667899999999999999999999999999999999
Q ss_pred EEEEeec
Q 003204 260 LKIGWGK 266 (839)
Q Consensus 260 IkV~~ak 266 (839)
|+|.|+|
T Consensus 112 l~V~~ak 118 (118)
T 2khc_A 112 LKVQLKK 118 (118)
T ss_dssp CCEEEC-
T ss_pred EEEEecC
Confidence 9999975
No 31
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.7e-15 Score=136.36 Aligned_cols=83 Identities=14% Similarity=0.281 Sum_probs=76.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
....++|||+|||+.+|+++|+++|++||.|.+|+|+. +. +|+++|||||.|.+.++|.+|+..|||..++|+.|+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVT---NR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE---CT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEE---CC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34568999999999999999999999999999999994 44 788999999999999999999999999999999999
Q ss_pred EEeecCC
Q 003204 262 IGWGKSV 268 (839)
Q Consensus 262 V~~ak~~ 268 (839)
|.|+++.
T Consensus 90 v~~a~~~ 96 (100)
T 2do4_A 90 VAISNSG 96 (100)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998865
No 32
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=138.04 Aligned_cols=85 Identities=27% Similarity=0.374 Sum_probs=78.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
....++|||+|||+.+|+++|+++|++||.|..|+|+. +..+++++|||||.|.+.++|++|+..|||..++|+.|+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPR---EPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCB---CSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---CCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34578999999999999999999999999999999984 666788999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 003204 262 IGWGKSVA 269 (839)
Q Consensus 262 V~~ak~~~ 269 (839)
|.|+++..
T Consensus 87 V~~a~~~~ 94 (103)
T 2dnm_A 87 VQVARYGR 94 (103)
T ss_dssp EEECSSCC
T ss_pred EEECCcCC
Confidence 99998653
No 33
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=137.58 Aligned_cols=82 Identities=17% Similarity=0.293 Sum_probs=76.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIAS--------VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 253 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~s--------VkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~ 253 (839)
.+..++|||||||+++|+++|+++|++||.|.+ |+|+. +..+|+++|||||.|.+.++|.+|+..|||.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~---~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYT---DRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEE---CTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEe---cCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 445799999999999999999999999999999 99984 5678899999999999999999999999999
Q ss_pred EECCeEEEEEeec
Q 003204 254 VVYEYELKIGWGK 266 (839)
Q Consensus 254 ~i~Gr~IkV~~ak 266 (839)
.++|+.|+|.||+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999975
No 34
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.62 E-value=1.5e-15 Score=135.85 Aligned_cols=82 Identities=20% Similarity=0.421 Sum_probs=77.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
+++|||+|||+.+++++|+++|++||.|.+|+|+. +..+|+++|||||.|.+.++|.+|+..|||..++|+.|+|.|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 78 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMF---DPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGY 78 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCB---CTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEe---CCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 57999999999999999999999999999999984 566789999999999999999999999999999999999999
Q ss_pred ecCCC
Q 003204 265 GKSVA 269 (839)
Q Consensus 265 ak~~~ 269 (839)
+++..
T Consensus 79 a~~~~ 83 (96)
T 2x1f_A 79 SSNSD 83 (96)
T ss_dssp CSCSS
T ss_pred cCCCC
Confidence 88754
No 35
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.7e-15 Score=135.11 Aligned_cols=83 Identities=25% Similarity=0.528 Sum_probs=77.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEE-EEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASV-KIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sV-kI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
..++|||+|||+.+|+++|+++|++||.|..| +|++ +..+|.++|||||.|.+.++|++|+..|||..++|++|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 80 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMR---DPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITV 80 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECC---CTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEE---cCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 46899999999999999999999999999999 9984 5578899999999999999999999999999999999999
Q ss_pred EeecCCC
Q 003204 263 GWGKSVA 269 (839)
Q Consensus 263 ~~ak~~~ 269 (839)
.|+++..
T Consensus 81 ~~a~~~~ 87 (96)
T 1x5t_A 81 SYAFKKD 87 (96)
T ss_dssp EESCCCC
T ss_pred EEecccC
Confidence 9988653
No 36
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=9.1e-16 Score=137.79 Aligned_cols=84 Identities=25% Similarity=0.429 Sum_probs=78.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCee-EEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeE---
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIA-SVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE--- 259 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~-sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~--- 259 (839)
..++|||+|||+++++++|+++|++||.|. +|+|++ +..+|+++|||||.|.+.++|++|+..|||..+.|+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIR---NRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEE---CSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEee---cCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 478999999999999999999999999999 999994 6668899999999999999999999999999999999
Q ss_pred -EEEEeecCCCC
Q 003204 260 -LKIGWGKSVAL 270 (839)
Q Consensus 260 -IkV~~ak~~~~ 270 (839)
|+|.|+++...
T Consensus 85 ~l~v~~a~~~~~ 96 (99)
T 2div_A 85 RFKLNYATYSGP 96 (99)
T ss_dssp ECCEEETTCCSS
T ss_pred eEEEeecCCCCC
Confidence 99999887643
No 37
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.61 E-value=1.3e-15 Score=138.37 Aligned_cols=87 Identities=17% Similarity=0.358 Sum_probs=79.3
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEE---C
Q 003204 180 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV---Y 256 (839)
Q Consensus 180 ~~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i---~ 256 (839)
..++..++|||+|||+.+|+++|+++|++||.|.+|+|+. +..+|+++|||||.|.+.++|.+|+..|||..+ .
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 84 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLK---DRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM 84 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCC---CSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEe---cCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC
Confidence 3455679999999999999999999999999999999994 666889999999999999999999999999998 8
Q ss_pred CeEEEEEeecCCC
Q 003204 257 EYELKIGWGKSVA 269 (839)
Q Consensus 257 Gr~IkV~~ak~~~ 269 (839)
|++|+|.|+++..
T Consensus 85 g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 85 NRPIQVKPADSES 97 (106)
T ss_dssp SSCCEEEECCCCS
T ss_pred CceEEEEECCccc
Confidence 9999999988653
No 38
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.61 E-value=1.9e-16 Score=140.41 Aligned_cols=81 Identities=15% Similarity=0.180 Sum_probs=71.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 186 TNLYVGNLSPQVDENFLLRTFGRFG--PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~L~~lF~~fG--~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
.+|||||||+++|+++|+++|++|| .|.+|+|+. +..+|+++|||||.|.+.++|++|+..|||..++|+.|+|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~---~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFE---NRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEE---CTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEe---cCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEE
Confidence 5799999999999999999999999 999999994 66789999999999999999999999999999999999999
Q ss_pred eecCCC
Q 003204 264 WGKSVA 269 (839)
Q Consensus 264 ~ak~~~ 269 (839)
++++.+
T Consensus 79 ~~~~~~ 84 (90)
T 3p5t_L 79 PSNKLE 84 (90)
T ss_dssp CC----
T ss_pred ECCCCc
Confidence 988653
No 39
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.8e-15 Score=133.16 Aligned_cols=84 Identities=29% Similarity=0.512 Sum_probs=76.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Q 003204 181 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (839)
Q Consensus 181 ~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~I 260 (839)
.....++|||+|||+.+|+++|+++|++||.|.+|+|++ +. +.+++||||.|.+.++|.+|+..|||..|+|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~---~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIF---NE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEEC---CT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345679999999999999999999999999999999995 22 2378999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 003204 261 KIGWGKSVA 269 (839)
Q Consensus 261 kV~~ak~~~ 269 (839)
+|.|+++..
T Consensus 86 ~v~~a~~~~ 94 (103)
T 2cq3_A 86 EVNNATARV 94 (103)
T ss_dssp EEEECCSSC
T ss_pred EEEEcccCC
Confidence 999998764
No 40
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=139.02 Aligned_cols=84 Identities=14% Similarity=0.281 Sum_probs=78.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
..+++|||+|||+.+|+++|+++|++||.|.+|+|++ +..+|+++|||||.|.+.++|++|+..|||..++|+.|+|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNL---DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEe---cCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 4578999999999999999999999999999999984 6677899999999999999999999999999999999999
Q ss_pred EeecCCC
Q 003204 263 GWGKSVA 269 (839)
Q Consensus 263 ~~ak~~~ 269 (839)
.|+++.+
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9998653
No 41
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.61 E-value=1.9e-15 Score=139.11 Aligned_cols=85 Identities=27% Similarity=0.513 Sum_probs=78.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Q 003204 181 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (839)
Q Consensus 181 ~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~I 260 (839)
+++..++|||+|||+.+|+++|+++|++||.|.+|+|+. +..+|+++|||||.|.+.++|.+|+..|||..++|+.|
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMM---DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEE---ETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 345679999999999999999999999999999999994 55678899999999999999999999999999999999
Q ss_pred EEEeecCC
Q 003204 261 KIGWGKSV 268 (839)
Q Consensus 261 kV~~ak~~ 268 (839)
+|.|+++.
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 99998864
No 42
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.9e-15 Score=136.16 Aligned_cols=85 Identities=22% Similarity=0.448 Sum_probs=78.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCc-cccCCcccEEEEEeCCHHHHHHHHHHh-CCCEECCeE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTE-EERRRQRNCGFVAFMNRADGQAAKDEM-QGVVVYEYE 259 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d-~~tg~~rg~gFV~F~~~~dAe~Al~~l-nG~~i~Gr~ 259 (839)
++..++|||+|||+.+|+++|+++|++||.|.+|+|+. + ..+|+++|||||.|.+.++|.+|+..| ||..++|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPK---KMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCC---CCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEec---CCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 45678999999999999999999999999999999984 4 467889999999999999999999999 999999999
Q ss_pred EEEEeecCCC
Q 003204 260 LKIGWGKSVA 269 (839)
Q Consensus 260 IkV~~ak~~~ 269 (839)
|+|.|+++..
T Consensus 89 l~v~~a~~~~ 98 (107)
T 2cph_A 89 LVLEWADSEV 98 (107)
T ss_dssp CEEEECCCCC
T ss_pred EEEEeCCCCC
Confidence 9999998753
No 43
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.9e-15 Score=137.07 Aligned_cols=85 Identities=22% Similarity=0.412 Sum_probs=78.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
....++|||+|||+.+|+++|+++|++||.|..|+|+. +..+++++|||||.|.+.++|++|+..|||..++|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPK---DRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCB---CSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34578999999999999999999999999999999984 556789999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 003204 262 IGWGKSVA 269 (839)
Q Consensus 262 V~~ak~~~ 269 (839)
|.|+++..
T Consensus 89 v~~a~~~~ 96 (105)
T 1x5u_A 89 VNKASAHN 96 (105)
T ss_dssp EEETTTTS
T ss_pred EEECCCCC
Confidence 99988653
No 44
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.61 E-value=2.2e-15 Score=140.33 Aligned_cols=82 Identities=27% Similarity=0.535 Sum_probs=76.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..++|||+|||+++|+++|+++|++||.|.+|+|+. +. +|+++|||||.|.+.++|++|+..|||..++|+.|+|.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIK---DR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEEC---ST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEE---CC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 468999999999999999999999999999999995 44 78899999999999999999999999999999999999
Q ss_pred eecCCC
Q 003204 264 WGKSVA 269 (839)
Q Consensus 264 ~ak~~~ 269 (839)
|+++.+
T Consensus 82 ~a~~~~ 87 (116)
T 2fy1_A 82 QAKKPS 87 (116)
T ss_dssp ECCCSS
T ss_pred ECCCCC
Confidence 998764
No 45
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.3e-15 Score=140.37 Aligned_cols=81 Identities=12% Similarity=0.160 Sum_probs=73.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhC--CCEECCeE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ--GVVVYEYE 259 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~ln--G~~i~Gr~ 259 (839)
++..++|||+|||+++|+++|+++|++||.|.+|+|+. .||||||+|.+.++|+.|+..|+ +..+.|++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~---------~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~ 83 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK---------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 83 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc---------CCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 34578999999999999999999999999999999993 37999999999999999999886 47899999
Q ss_pred EEEEeecCCCCC
Q 003204 260 LKIGWGKSVALP 271 (839)
Q Consensus 260 IkV~~ak~~~~p 271 (839)
|+|.|+++..+.
T Consensus 84 l~V~~A~~~~~~ 95 (105)
T 1sjq_A 84 IYIQFSNHKELK 95 (105)
T ss_dssp CCBCCCSSSSCC
T ss_pred EEEEEcCCCCCC
Confidence 999999876543
No 46
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=3.2e-15 Score=136.83 Aligned_cols=85 Identities=19% Similarity=0.377 Sum_probs=78.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhC------CCEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ------GVVV 255 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~ln------G~~i 255 (839)
....++|||+|||+.+|+++|+++|++||.|.+|+|++ +..+|+++|||||.|.+.++|.+|+..|| |..+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVL---HPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCB---CSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 34578999999999999999999999999999999994 66788899999999999999999999999 9999
Q ss_pred CCeEEEEEeecCCC
Q 003204 256 YEYELKIGWGKSVA 269 (839)
Q Consensus 256 ~Gr~IkV~~ak~~~ 269 (839)
+|+.|+|.|+++..
T Consensus 89 ~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 89 DGRQLKVDLAVTRD 102 (111)
T ss_dssp SSCEEEEECCCCCC
T ss_pred cCEEEEEEECCCCc
Confidence 99999999988653
No 47
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=7.3e-15 Score=135.22 Aligned_cols=83 Identities=17% Similarity=0.300 Sum_probs=76.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
.+..++|||+|||+.+|+++|+++|++||.|.+|+|+. +. +|++++||||.|.+.++|++|+..|||..++|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILE---DK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE---CT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 34578999999999999999999999999999999995 33 478899999999999999999999999999999999
Q ss_pred EEeecCC
Q 003204 262 IGWGKSV 268 (839)
Q Consensus 262 V~~ak~~ 268 (839)
|.|++..
T Consensus 88 v~~a~~~ 94 (114)
T 2do0_A 88 VKMDERA 94 (114)
T ss_dssp EEECSCC
T ss_pred EEEcccC
Confidence 9998754
No 48
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.9e-15 Score=136.45 Aligned_cols=84 Identities=29% Similarity=0.475 Sum_probs=78.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
+..++|||+|||+++|+++|+++|++||.|..|+|++ +..++++++||||.|.+.++|.+|+..|||..++|+.|+|
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVK---DRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECC---CSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEe---CCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 4578999999999999999999999999999999994 5567889999999999999999999999999999999999
Q ss_pred EeecCCC
Q 003204 263 GWGKSVA 269 (839)
Q Consensus 263 ~~ak~~~ 269 (839)
.|+++..
T Consensus 87 ~~a~~~~ 93 (102)
T 1x5s_A 87 DQAGKSS 93 (102)
T ss_dssp EEEECCC
T ss_pred EECCCCC
Confidence 9998764
No 49
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.60 E-value=2.3e-15 Score=137.91 Aligned_cols=84 Identities=14% Similarity=0.327 Sum_probs=78.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
....++|||+|||+.+|+++|+.+|++||.|.+|+|+. +..+|+++|||||.|.+.++|.+|+..|||..++|+.|+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNL---DRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCB---CTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---cCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34578999999999999999999999999999999984 667789999999999999999999999999999999999
Q ss_pred EEeecCC
Q 003204 262 IGWGKSV 268 (839)
Q Consensus 262 V~~ak~~ 268 (839)
|.|+++.
T Consensus 100 V~~a~~~ 106 (110)
T 1oo0_B 100 VDWCFVK 106 (110)
T ss_dssp EEESEES
T ss_pred EEEcccC
Confidence 9998865
No 50
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.8e-15 Score=134.81 Aligned_cols=83 Identities=34% Similarity=0.518 Sum_probs=77.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
....++|||+|||+.+|+++|+++|++||.|.+|+|+. + +|.+++||||.|.+.++|.+|+..|||..++|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM---E--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEE---C--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc---C--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 44678999999999999999999999999999999994 3 788999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 003204 262 IGWGKSVA 269 (839)
Q Consensus 262 V~~ak~~~ 269 (839)
|.|+++..
T Consensus 87 V~~a~~~~ 94 (103)
T 2d9p_A 87 VALAQRKE 94 (103)
T ss_dssp EEECSSCC
T ss_pred EEEecccc
Confidence 99998764
No 51
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.2e-15 Score=134.17 Aligned_cols=80 Identities=15% Similarity=0.217 Sum_probs=73.3
Q ss_pred CccEEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeE
Q 003204 184 QTTNLYVGNLSPQVDENFLL----RTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~----~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~ 259 (839)
..++|||+|||+.+++++|+ ++|++||.|.+|+|+. +..+ ++||||.|.+.++|++|+..|||..++|++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~---~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSP---HTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECS---CCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEe---CCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 46899999999999999999 9999999999999995 3333 789999999999999999999999999999
Q ss_pred EEEEeecCCC
Q 003204 260 LKIGWGKSVA 269 (839)
Q Consensus 260 IkV~~ak~~~ 269 (839)
|+|.|+++.+
T Consensus 82 l~V~~a~~~~ 91 (96)
T 2dgx_A 82 ILVSLATGAS 91 (96)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEcCCCC
Confidence 9999998764
No 52
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.60 E-value=3.1e-15 Score=135.70 Aligned_cols=84 Identities=25% Similarity=0.437 Sum_probs=77.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECC---e
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE---Y 258 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~G---r 258 (839)
.+..++|||+|||+.+|+++|+++|++||.|.+|+|+. +. +|+++|||||.|.+.++|++|+..|||..+.| +
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLR---GP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE---CS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 44579999999999999999999999999999999995 33 68889999999999999999999999999998 9
Q ss_pred EEEEEeecCCC
Q 003204 259 ELKIGWGKSVA 269 (839)
Q Consensus 259 ~IkV~~ak~~~ 269 (839)
.|+|.|+++..
T Consensus 88 ~l~V~~a~~~~ 98 (105)
T 2dnh_A 88 SLVVKFADTDK 98 (105)
T ss_dssp CCEEEESCSSC
T ss_pred cEEEEECccCc
Confidence 99999988653
No 53
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4e-15 Score=136.89 Aligned_cols=85 Identities=19% Similarity=0.302 Sum_probs=78.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCee--------EEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIA--------SVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 253 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~--------sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~ 253 (839)
+...++|||+|||+.+|+++|+++|++||.|. .|+|++ +..+|+++|||||.|.+.++|.+|+..|||.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYL---DKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCB---CTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEE---eCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 44679999999999999999999999999999 599984 6678899999999999999999999999999
Q ss_pred EECCeEEEEEeecCCC
Q 003204 254 VVYEYELKIGWGKSVA 269 (839)
Q Consensus 254 ~i~Gr~IkV~~ak~~~ 269 (839)
.+.|+.|+|.|+++..
T Consensus 89 ~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKP 104 (113)
T ss_dssp EETTEECEEECSSCCC
T ss_pred ccCCCEEEEEECCCCC
Confidence 9999999999988653
No 54
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.60 E-value=4.4e-16 Score=141.14 Aligned_cols=81 Identities=15% Similarity=0.129 Sum_probs=76.3
Q ss_pred CccEEEEcCCCC------CCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECC
Q 003204 184 QTTNLYVGNLSP------QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 257 (839)
Q Consensus 184 ~~ttLfVgNLp~------~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~G 257 (839)
..++|||+|||+ ++++++|+++|++||.|.+|+|++ +..+|+++|||||.|.+.++|++|+..|||..+.|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~---d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPI---DEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCE---ETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEE---cCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 368999999999 999999999999999999999994 77789999999999999999999999999999999
Q ss_pred -eEEEEEeecC
Q 003204 258 -YELKIGWGKS 267 (839)
Q Consensus 258 -r~IkV~~ak~ 267 (839)
+.|+|.|+++
T Consensus 82 ~r~l~V~~a~~ 92 (100)
T 3ns6_A 82 KHRLFLYTMKD 92 (100)
T ss_dssp SCBCEEEESHH
T ss_pred CeEEEEEECch
Confidence 9999999864
No 55
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2e-15 Score=135.27 Aligned_cols=85 Identities=21% Similarity=0.229 Sum_probs=77.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Q 003204 181 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (839)
Q Consensus 181 ~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~I 260 (839)
..+..++|||+|||+.+++++|+++|++||.|..++++. +..+|+++|||||.|.+.++|++|+..|||..|+|+.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 87 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLK---YNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEE---ECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEE---ECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 345578999999999999999999999999999888873 66788999999999999999999999999999999999
Q ss_pred EEEeecCC
Q 003204 261 KIGWGKSV 268 (839)
Q Consensus 261 kV~~ak~~ 268 (839)
+|.|++..
T Consensus 88 ~V~~a~~~ 95 (98)
T 2cqp_A 88 KLVLGSGP 95 (98)
T ss_dssp EEEESSCS
T ss_pred EEEEcCCC
Confidence 99997743
No 56
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.60 E-value=2.7e-15 Score=131.28 Aligned_cols=82 Identities=18% Similarity=0.329 Sum_probs=74.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCC-cccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRR-QRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~-~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
..++|||+|||+++|+++|+++|++||.|.+|+|+. +..++. ++|||||.|.+.++|.+|+..|||..++|+.|+|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~---~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 79 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPV---ERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITA 79 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCE---ETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEe---CCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEE
Confidence 468999999999999999999999999999999984 444444 8999999999999999999999999999999999
Q ss_pred EeecCC
Q 003204 263 GWGKSV 268 (839)
Q Consensus 263 ~~ak~~ 268 (839)
.|+++.
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 998753
No 57
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.60 E-value=2.6e-15 Score=133.63 Aligned_cols=82 Identities=24% Similarity=0.442 Sum_probs=75.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
++..++|||+|||+.+++++|+++|++||.|.+|+|+. +. +|+++|||||.|.+.++|.+|+..|||..++|++|+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICK---DR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEE---CT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEE---CC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 44578999999999999999999999999999999995 33 378899999999999999999999999999999999
Q ss_pred EEeecC
Q 003204 262 IGWGKS 267 (839)
Q Consensus 262 V~~ak~ 267 (839)
|.|++.
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999874
No 58
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=8.3e-15 Score=130.04 Aligned_cols=77 Identities=22% Similarity=0.369 Sum_probs=71.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
....++|||+|||+++|+++|+++|++||.|..|+|+ ++||||.|.+.++|.+|+..|||..++|+.|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 4567999999999999999999999999999999998 34999999999999999999999999999999
Q ss_pred EEeecCCC
Q 003204 262 IGWGKSVA 269 (839)
Q Consensus 262 V~~ak~~~ 269 (839)
|.|+++..
T Consensus 76 V~~a~~~~ 83 (92)
T 2dgt_A 76 VQLSTSRL 83 (92)
T ss_dssp EEESSCCC
T ss_pred EEEccCCC
Confidence 99998653
No 59
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.8e-15 Score=137.05 Aligned_cols=82 Identities=24% Similarity=0.443 Sum_probs=76.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcc-CCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCE-ECCeEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGR-FGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV-VYEYELK 261 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~-fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~-i~Gr~Ik 261 (839)
..++|||+|||+++|+++|+++|++ ||.|.+|+|++ +. +|+++|||||.|.+.++|.+|+..|||.. ++|+.|+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVL---DQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEE---CT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEE---CC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4689999999999999999999999 99999999994 44 78899999999999999999999999999 9999999
Q ss_pred EEeecCCC
Q 003204 262 IGWGKSVA 269 (839)
Q Consensus 262 V~~ak~~~ 269 (839)
|.|+++..
T Consensus 84 v~~a~~~~ 91 (104)
T 2dhg_A 84 LSVAIPKA 91 (104)
T ss_dssp CCBCCCCC
T ss_pred EEEccCCC
Confidence 99987654
No 60
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.59 E-value=2.9e-15 Score=132.53 Aligned_cols=82 Identities=20% Similarity=0.336 Sum_probs=76.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
+..++|||+|||+.+++++|+++|++||.|..|+|+. .+|+++|||||.|.+.++|++|+..|||..++|+.|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~-----~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM-----ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEE-----SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-----cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3568999999999999999999999999999999983 36789999999999999999999999999999999999
Q ss_pred EeecCCC
Q 003204 263 GWGKSVA 269 (839)
Q Consensus 263 ~~ak~~~ 269 (839)
.|+++..
T Consensus 81 ~~a~~~~ 87 (92)
T 2dgv_A 81 RIDRNAS 87 (92)
T ss_dssp EECSCCS
T ss_pred EEcCCCC
Confidence 9998764
No 61
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.3e-15 Score=129.49 Aligned_cols=76 Identities=29% Similarity=0.626 Sum_probs=71.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHh-CCCEECCeEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEM-QGVVVYEYEL 260 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~l-nG~~i~Gr~I 260 (839)
++..++|||+|||+.+++++|+++|++||.|.+|+|++ ++|||||.|.+.++|.+|+..| +|..++|++|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 44578999999999999999999999999999999983 5799999999999999999999 9999999999
Q ss_pred EEEeec
Q 003204 261 KIGWGK 266 (839)
Q Consensus 261 kV~~ak 266 (839)
+|.|||
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 999986
No 62
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=8.2e-15 Score=132.78 Aligned_cols=82 Identities=17% Similarity=0.269 Sum_probs=75.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
...++|||+|||+.+|+++|+++|++|| |.+|+|+. +..+|+++|||||.|.+.++|++|+ .|||..|+|+.|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVR---DKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEE---CSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEee---cCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3568999999999999999999999997 99999994 6677899999999999999999999 99999999999999
Q ss_pred EeecCCC
Q 003204 263 GWGKSVA 269 (839)
Q Consensus 263 ~~ak~~~ 269 (839)
.|+++..
T Consensus 88 ~~a~~~~ 94 (103)
T 2dng_A 88 DIAEGRK 94 (103)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9988653
No 63
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.59 E-value=7.7e-15 Score=137.53 Aligned_cols=85 Identities=22% Similarity=0.250 Sum_probs=78.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
....++|||+|||+.+++++|+++|++||.|.+|+|++ +. +|+++|||||.|.+.++|.+|+..|||..++|+.|+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~---~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 107 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDY---DR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 107 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEEC---CS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEE---CC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34578999999999999999999999999999999995 44 788999999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 003204 262 IGWGKSVAL 270 (839)
Q Consensus 262 V~~ak~~~~ 270 (839)
|.|+.+...
T Consensus 108 V~~a~~~~~ 116 (124)
T 2kt5_A 108 IQLVASQID 116 (124)
T ss_dssp EEEECCTTC
T ss_pred EEEeCCCCC
Confidence 999987643
No 64
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=4.2e-15 Score=137.09 Aligned_cols=86 Identities=24% Similarity=0.333 Sum_probs=76.3
Q ss_pred CccEEEEcCCCCCCCHHHHH---HHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Q 003204 184 QTTNLYVGNLSPQVDENFLL---RTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~---~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~I 260 (839)
..++|||+|||+.+++++|. ++|++||.|..|+|+..+....+++++|||||.|.+.++|++|+..|||..++|++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 46899999999999999999 999999999999998533222345677999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 003204 261 KIGWGKSVA 269 (839)
Q Consensus 261 kV~~ak~~~ 269 (839)
+|.||++.+
T Consensus 94 ~V~~a~~k~ 102 (111)
T 2cpi_A 94 KASLGTTKY 102 (111)
T ss_dssp EEESCCCCS
T ss_pred EEEeccccc
Confidence 999988763
No 65
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.59 E-value=5.1e-15 Score=129.76 Aligned_cols=80 Identities=19% Similarity=0.297 Sum_probs=73.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
+...++|||+|||+.+|+++|+++|++||.|.+|+|+. +..+|+++|||||.|.+.++|++|+ .+++..++|+.|+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~ 83 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM---DPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVID 83 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEE---CTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEee---cCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEE
Confidence 34578999999999999999999999999999999984 5667899999999999999999999 5688999999999
Q ss_pred EEee
Q 003204 262 IGWG 265 (839)
Q Consensus 262 V~~a 265 (839)
|.||
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 66
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.1e-14 Score=131.85 Aligned_cols=83 Identities=35% Similarity=0.576 Sum_probs=75.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
+...++|||+|||+.+|+++|+++|++||.|.+|+|++ +. +.+++||||.|.+.++|.+|+..|||..+.|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMIT---EH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEEC---CC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEe---cC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 34578999999999999999999999999999999995 32 23689999999999999999999999999999999
Q ss_pred EEeecCCC
Q 003204 262 IGWGKSVA 269 (839)
Q Consensus 262 V~~ak~~~ 269 (839)
|.|+++..
T Consensus 87 V~~a~~~~ 94 (103)
T 2cqi_A 87 VNWATTPS 94 (103)
T ss_dssp EEECCCTT
T ss_pred EEECCCCc
Confidence 99988753
No 67
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.7e-15 Score=136.41 Aligned_cols=84 Identities=29% Similarity=0.510 Sum_probs=76.2
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Q 003204 181 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (839)
Q Consensus 181 ~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~I 260 (839)
.....++|||+|||+++|+++|+++|++||.|.+|+|+. + .+.++|||||.|.+.++|++|+..|||..++|+.|
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~--~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIF---N--ERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECC---B--TTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEE---C--CCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 345678999999999999999999999999999999984 3 23488999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 003204 261 KIGWGKSVA 269 (839)
Q Consensus 261 kV~~ak~~~ 269 (839)
+|.|+++..
T Consensus 100 ~V~~a~~~~ 108 (109)
T 2err_A 100 EVNNATARV 108 (109)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCc
Confidence 999998753
No 68
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.58 E-value=6e-15 Score=134.28 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=75.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
...++|||+|||+.+|+++|+++|++||.|.+|+|+. +. +|+++|||||.|.+.++|.+|+..|||..++|+.|+|
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHY---DR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE---CT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4578999999999999999999999999999999994 44 7889999999999999999999999999999999999
Q ss_pred Eeec
Q 003204 263 GWGK 266 (839)
Q Consensus 263 ~~ak 266 (839)
.|+.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9975
No 69
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4.8e-15 Score=134.63 Aligned_cols=85 Identities=18% Similarity=0.251 Sum_probs=77.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Q 003204 181 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (839)
Q Consensus 181 ~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~I 260 (839)
.++..++|||+|||+.+|+++|+++|++||.|.+|+|+. +..+|+++|||||.|.+.++|.+|+.. ||..|+|+.|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l 87 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMK---DKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNI 87 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEE---CSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee---CCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence 345679999999999999999999999999999999994 567889999999999999999999988 9999999999
Q ss_pred EEEeecCCC
Q 003204 261 KIGWGKSVA 269 (839)
Q Consensus 261 kV~~ak~~~ 269 (839)
+|.|+++..
T Consensus 88 ~V~~a~~~~ 96 (105)
T 2dh8_A 88 DPKPCTPRG 96 (105)
T ss_dssp BCCCSCCSS
T ss_pred EEEEccCCC
Confidence 999988654
No 70
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.58 E-value=7e-15 Score=140.20 Aligned_cols=85 Identities=34% Similarity=0.502 Sum_probs=78.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
+...++|||+|||+++|+++|+++|+.||.|.+|+|+. +..+|+++|||||.|.+.++|.+|+..|||..++|+.|+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVC---DRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEE---ETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 44578999999999999999999999999999999994 666788999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 003204 262 IGWGKSVA 269 (839)
Q Consensus 262 V~~ak~~~ 269 (839)
|.|+++..
T Consensus 116 v~~a~~~~ 123 (139)
T 1u6f_A 116 VALAASGH 123 (139)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 99998653
No 71
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.58 E-value=5.6e-15 Score=134.98 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=72.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCE--ECCeEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV--VYEYEL 260 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~--i~Gr~I 260 (839)
+.+++|||+|||+++|+++|+++|++||.|.+|+|+ +.||||||+|.+.++|..|+..|+|.. +.|++|
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~---------~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM---------PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE---------cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 356899999999999999999999999999999998 357999999999999999999999875 789999
Q ss_pred EEEeecCCCC
Q 003204 261 KIGWGKSVAL 270 (839)
Q Consensus 261 kV~~ak~~~~ 270 (839)
+|.|+++..|
T Consensus 90 ~V~~S~~k~l 99 (100)
T 3r27_A 90 FVNYSTSQKI 99 (100)
T ss_dssp EEEECSCSCC
T ss_pred EEEecccccc
Confidence 9999987643
No 72
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.58 E-value=4.3e-15 Score=130.41 Aligned_cols=80 Identities=14% Similarity=0.284 Sum_probs=75.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..++|||+|||+++|+++|+++|++||.|.+|+|+. +..+|+++|||||.|.+.++|++|+ .|||..++|+.|+|.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~ 80 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILC---DKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVI 80 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEE---SCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEe---cCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEE
Confidence 358999999999999999999999999999999984 5568899999999999999999999 999999999999999
Q ss_pred eecC
Q 003204 264 WGKS 267 (839)
Q Consensus 264 ~ak~ 267 (839)
|+++
T Consensus 81 ~a~~ 84 (89)
T 3ucg_A 81 PKRT 84 (89)
T ss_dssp ETTT
T ss_pred EccC
Confidence 9875
No 73
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=9.5e-15 Score=129.24 Aligned_cols=81 Identities=12% Similarity=0.103 Sum_probs=75.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
....++|||+|||+++|+++|+++|+.| .|.+|+|++ + .+|+++|||||.|.+.++|.+|+. |||..++|+.|+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~---~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~ 80 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVR---N-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIE 80 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEE---C-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEE---C-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEE
Confidence 3456899999999999999999999999 999999994 4 678899999999999999999998 999999999999
Q ss_pred EEeecCC
Q 003204 262 IGWGKSV 268 (839)
Q Consensus 262 V~~ak~~ 268 (839)
|.|+++.
T Consensus 81 v~~a~~~ 87 (91)
T 2dgw_A 81 VFREKSG 87 (91)
T ss_dssp EEEESSC
T ss_pred EEECCcC
Confidence 9998865
No 74
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.5e-14 Score=132.21 Aligned_cols=80 Identities=13% Similarity=0.162 Sum_probs=72.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHh--CCCEECCeE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEM--QGVVVYEYE 259 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~l--nG~~i~Gr~ 259 (839)
.+.+++|||+|||+.+|+++|+++|++||.|.+|.|+. .||||||+|.+.++|..|+..| ++..+.|++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~---------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK---------GKNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC---------CCCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 34578999999999999999999999999999999983 3799999999999999999976 578899999
Q ss_pred EEEEeecCCCC
Q 003204 260 LKIGWGKSVAL 270 (839)
Q Consensus 260 IkV~~ak~~~~ 270 (839)
|+|.|+++..+
T Consensus 83 l~V~~a~~~~~ 93 (101)
T 2cq1_A 83 IYIQYSNHKEL 93 (101)
T ss_dssp CEEEECSCSSC
T ss_pred EEEEEcCcccC
Confidence 99999987654
No 75
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9.5e-16 Score=133.83 Aligned_cols=81 Identities=21% Similarity=0.323 Sum_probs=75.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
+.+++|||+|||+++++++|+++|++||.|.+|+|+. +..+|+++|||||.|.+.++|.+|+..|||..++|+.|+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 79 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAIL---DKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQ 79 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEEC---CSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEee
Confidence 3568999999999999999999999999999999994 5567899999999999999999999999999999999999
Q ss_pred Eeec
Q 003204 263 GWGK 266 (839)
Q Consensus 263 ~~ak 266 (839)
.|++
T Consensus 80 ~~~~ 83 (85)
T 1x4e_A 80 SGPS 83 (85)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 8854
No 76
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.1e-14 Score=132.20 Aligned_cols=81 Identities=16% Similarity=0.273 Sum_probs=74.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCcccc-CCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEER-RRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~t-g~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
...++|||+|||+.+|+++|+++|+.|| |.+|+|+. +..+ |+++|||||.|.+.++|++|+ .|||..++|+.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~---~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPR---EPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCB---CSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEec---CCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 3468999999999999999999999999 99999984 5555 889999999999999999999 9999999999999
Q ss_pred EEeecCC
Q 003204 262 IGWGKSV 268 (839)
Q Consensus 262 V~~ak~~ 268 (839)
|.|+++.
T Consensus 88 V~~a~~~ 94 (104)
T 1wi8_A 88 VDVADQA 94 (104)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 9998865
No 77
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.8e-14 Score=130.36 Aligned_cols=83 Identities=19% Similarity=0.178 Sum_probs=75.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
+...++|||+|||+.+++++|+++|++||.|..|+|+. +..+|+++|||||.|.+.++|.+|+. ++..++|+.|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK---DLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEE---CSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEe---cCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 44578999999999999999999999999999999994 55678999999999999999999997 57899999999
Q ss_pred EEeecCCC
Q 003204 262 IGWGKSVA 269 (839)
Q Consensus 262 V~~ak~~~ 269 (839)
|.|+++..
T Consensus 87 v~~a~~~~ 94 (103)
T 2cqg_A 87 CKLPNSKQ 94 (103)
T ss_dssp EECCCTTC
T ss_pred EEecCCCC
Confidence 99988764
No 78
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1e-14 Score=133.97 Aligned_cols=79 Identities=19% Similarity=0.203 Sum_probs=71.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCC--EECCeEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV--VVYEYEL 260 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~--~i~Gr~I 260 (839)
+.+++|||+|||+.+++++|+++|++||.|.+|.|+. .||||||+|.+.++|.+|+..|++. .+.|++|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~---------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP---------FKRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC---------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 4568999999999999999999999999999999983 4799999999999999999988764 5999999
Q ss_pred EEEeecCCCC
Q 003204 261 KIGWGKSVAL 270 (839)
Q Consensus 261 kV~~ak~~~~ 270 (839)
+|.|++...+
T Consensus 84 ~V~~a~~~~~ 93 (104)
T 1wex_A 84 FFNYSTSKRI 93 (104)
T ss_dssp EEEECSSSSC
T ss_pred EEEEccCccc
Confidence 9999987653
No 79
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.6e-14 Score=132.15 Aligned_cols=82 Identities=24% Similarity=0.412 Sum_probs=74.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
+...++|||+|||+++|+++|+++|++||.|..|+|+. ++++++||||.|.+.++|++|+..|||..|+|+.|+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN------RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC------SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE------CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 34578999999999999999999999999999999973 345789999999999999999999999999999999
Q ss_pred EEeecCCC
Q 003204 262 IGWGKSVA 269 (839)
Q Consensus 262 V~~ak~~~ 269 (839)
|.|+++..
T Consensus 93 V~~a~~~~ 100 (109)
T 1x4a_A 93 VEFPRSGR 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEEcccCC
Confidence 99988653
No 80
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.57 E-value=4.4e-15 Score=145.87 Aligned_cols=82 Identities=12% Similarity=0.189 Sum_probs=76.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFG--PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG--~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
..++|||||||+++|+++|+++|++|| .|.+|+|+. +..+|+++|||||.|.+.++|++|+..|||..|+|+.|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~---d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAE---NRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEE---CTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeE
Confidence 468999999999999999999999999 999999994 677899999999999999999999999999999999999
Q ss_pred EEeecCC
Q 003204 262 IGWGKSV 268 (839)
Q Consensus 262 V~~ak~~ 268 (839)
|.|+++.
T Consensus 131 V~~a~~~ 137 (156)
T 3n9u_C 131 VRPATRQ 137 (156)
T ss_dssp EEECCHH
T ss_pred EEEcCCC
Confidence 9998754
No 81
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.57 E-value=1.9e-15 Score=143.42 Aligned_cols=85 Identities=12% Similarity=0.318 Sum_probs=78.0
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeE--EEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCC----
Q 003204 180 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIAS--VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV---- 253 (839)
Q Consensus 180 ~~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~s--VkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~---- 253 (839)
..+...++|||||||+++|+++|+++|++||.|.. |+|+. +..+|+++|||||.|.+. +|.+|+..|||.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~---d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~ 93 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIK---DKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPL 93 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCB---CSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEE---cCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCc
Confidence 34456789999999999999999999999999977 99994 677899999999999999 999999999999
Q ss_pred EECCeEEEEEeecCC
Q 003204 254 VVYEYELKIGWGKSV 268 (839)
Q Consensus 254 ~i~Gr~IkV~~ak~~ 268 (839)
.++|+.|+|.|+++.
T Consensus 94 ~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 94 TIDGKTINVEFAKGS 108 (131)
T ss_dssp CGGGCCCCCEECCCS
T ss_pred cCCCEEEEEEECCCC
Confidence 999999999999864
No 82
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.57 E-value=5.4e-15 Score=138.68 Aligned_cols=85 Identities=14% Similarity=0.279 Sum_probs=78.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
....++|||+|||+.+|+++|..+|++||.|.+|+|+. +..+|.++|||||.|.+.++|++|+..|||..|+|+.|+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNL---DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCB---CTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 34578999999999999999999999999999999984 556889999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 003204 262 IGWGKSVA 269 (839)
Q Consensus 262 V~~ak~~~ 269 (839)
|.|+++..
T Consensus 96 v~~a~~~~ 103 (126)
T 3ex7_B 96 VDWCFVRG 103 (126)
T ss_dssp EEESEESS
T ss_pred EEEecCCC
Confidence 99998664
No 83
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.5e-15 Score=135.86 Aligned_cols=82 Identities=15% Similarity=0.260 Sum_probs=76.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
...++|||+|||+++++++|+++|++||.|..|+|+. +..+|+++|||||.|.+.++|++|+ .|||..|+|+.|+|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 98 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIIS---DRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIV 98 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECC---SCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEe---cCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEE
Confidence 3568999999999999999999999999999999994 6677899999999999999999999 99999999999999
Q ss_pred EeecCC
Q 003204 263 GWGKSV 268 (839)
Q Consensus 263 ~~ak~~ 268 (839)
.|+++.
T Consensus 99 ~~a~~~ 104 (114)
T 2cq4_A 99 QASQAE 104 (114)
T ss_dssp EEHHHH
T ss_pred EecCCC
Confidence 998754
No 84
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=5e-15 Score=140.88 Aligned_cols=81 Identities=16% Similarity=0.246 Sum_probs=73.3
Q ss_pred CCccEEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCe
Q 003204 183 PQTTNLYVGNLSPQVDENFLL----RTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 258 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~----~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr 258 (839)
+..++|||||||+.+++++|+ ++|++||.|.+|.|+. +|+++|||||.|.+.++|..|+..|||..+.|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~------~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL------SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC------CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc------CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 346899999999999999876 6999999999998862 567899999999999999999999999999999
Q ss_pred EEEEEeecCCC
Q 003204 259 ELKIGWGKSVA 269 (839)
Q Consensus 259 ~IkV~~ak~~~ 269 (839)
+|+|.|++..+
T Consensus 101 ~l~V~~a~~~~ 111 (127)
T 2a3j_A 101 PLVITFSETPQ 111 (127)
T ss_dssp CCEEEECCCCC
T ss_pred EEEEEEccCcc
Confidence 99999988653
No 85
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=5.6e-15 Score=133.22 Aligned_cols=76 Identities=25% Similarity=0.499 Sum_probs=71.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
+..++|||||||+++++++|+.+|++||.|.+|+|+ +++|||||.|.+.++|.+|+..|||..++|+.|+|
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 95 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRT 95 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 346899999999999999999999999999999998 46899999999999999999999999999999999
Q ss_pred EeecC
Q 003204 263 GWGKS 267 (839)
Q Consensus 263 ~~ak~ 267 (839)
.|+++
T Consensus 96 ~~a~~ 100 (101)
T 2la4_A 96 GWGKE 100 (101)
T ss_dssp CBCCC
T ss_pred EeccC
Confidence 99885
No 86
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.56 E-value=6.9e-15 Score=131.00 Aligned_cols=74 Identities=16% Similarity=0.226 Sum_probs=70.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
.++.||||||++.+||++|+++|.+||+|.+++++. ++|||||+|.+.++|.+|++.|||..+.|++|+|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~ 76 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAE 76 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 467899999999999999999999999999999983 68999999999999999999999999999999999
Q ss_pred eec
Q 003204 264 WGK 266 (839)
Q Consensus 264 ~ak 266 (839)
+|.
T Consensus 77 ~A~ 79 (89)
T 2wbr_A 77 SPS 79 (89)
T ss_dssp CCC
T ss_pred ECC
Confidence 973
No 87
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.56 E-value=3.3e-15 Score=132.89 Aligned_cols=83 Identities=20% Similarity=0.193 Sum_probs=74.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
.+..++|||+|||+.+|+++|+++|++||.|..++++. +..+|+++|||||.|.+.++|++|+..|||..++|++|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~ 88 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLK---YNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEE---ECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEE---eCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 34568999999999999999999999999999888884 567888999999999999999999999999999999999
Q ss_pred EEeecC
Q 003204 262 IGWGKS 267 (839)
Q Consensus 262 V~~ak~ 267 (839)
|.++.+
T Consensus 89 v~~a~s 94 (95)
T 2ek1_A 89 LSGPSS 94 (95)
T ss_dssp EECCC-
T ss_pred EEeccC
Confidence 998753
No 88
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3e-15 Score=137.07 Aligned_cols=81 Identities=12% Similarity=0.177 Sum_probs=74.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
+...++|||||||+++|+++|+++|++||+|.+|+|+. +.. |+++|||||.|.+.++|.+|+. ++|..++|+.|+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~---d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~ 82 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRR---TLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLL 82 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEEC---CCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEE---CCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEE
Confidence 34568999999999999999999999999999999995 444 8899999999999999999997 999999999999
Q ss_pred EEeecC
Q 003204 262 IGWGKS 267 (839)
Q Consensus 262 V~~ak~ 267 (839)
|.|++.
T Consensus 83 V~~~~~ 88 (103)
T 1s79_A 83 ILFKDD 88 (103)
T ss_dssp EEEHHH
T ss_pred EEEchH
Confidence 999764
No 89
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.9e-15 Score=136.77 Aligned_cols=83 Identities=19% Similarity=0.423 Sum_probs=77.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
...++|||+|||+.+++++|+++|++||.|.+|+|++ +..+|+++|||||.|.+.++|.+|+..|||..++|+.|+|
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 82 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVY---DRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEE---ETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEe---CCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 3568999999999999999999999999999999994 5567889999999999999999999999999999999999
Q ss_pred EeecCC
Q 003204 263 GWGKSV 268 (839)
Q Consensus 263 ~~ak~~ 268 (839)
.|+++.
T Consensus 83 ~~a~~~ 88 (104)
T 1p1t_A 83 DNAASE 88 (104)
T ss_dssp EETTCT
T ss_pred EeCCCc
Confidence 998765
No 90
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.56 E-value=1.1e-14 Score=141.68 Aligned_cols=84 Identities=27% Similarity=0.416 Sum_probs=78.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
....++|||+|||+.+|+++|+++|++||.|.+|+|++ +..+|+++|||||.|.+.++|++|+..|||..++|++|+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 143 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPR---DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 143 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCC---CSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee---cCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34578999999999999999999999999999999984 667889999999999999999999999999999999999
Q ss_pred EEeecCC
Q 003204 262 IGWGKSV 268 (839)
Q Consensus 262 V~~ak~~ 268 (839)
|.|+++.
T Consensus 144 v~~a~~~ 150 (158)
T 2kn4_A 144 VQMARYG 150 (158)
T ss_dssp EEEECCS
T ss_pred EEECCCC
Confidence 9999865
No 91
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=137.61 Aligned_cols=83 Identities=28% Similarity=0.472 Sum_probs=76.2
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeE
Q 003204 180 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (839)
Q Consensus 180 ~~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~ 259 (839)
...+..++|||+|||+.+|+++|+++|++||.|.+|+|++ +..+|+++|||||.|.+.++|++|+..|||..+.|+.
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 134 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPL---DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 134 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCC---CTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEee---cCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3455679999999999999999999999999999999984 5667899999999999999999999999999999999
Q ss_pred EEEEee
Q 003204 260 LKIGWG 265 (839)
Q Consensus 260 IkV~~a 265 (839)
|+|.||
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999985
No 92
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.56 E-value=6e-15 Score=140.26 Aligned_cols=84 Identities=29% Similarity=0.447 Sum_probs=78.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
.+..++|||+|||+.+|+++|+++|++||.|..|+|++ +..+|+.+|||||.|.+.++|++|+..|||..|+|++|+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~---d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVY---DQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEEC---CSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34578999999999999999999999999999999995 667789999999999999999999999999999999999
Q ss_pred EEeecCC
Q 003204 262 IGWGKSV 268 (839)
Q Consensus 262 V~~ak~~ 268 (839)
|.|+++.
T Consensus 120 V~~a~~~ 126 (129)
T 2kxn_B 120 VDFSITK 126 (129)
T ss_dssp ESCCSSS
T ss_pred EEEecCC
Confidence 9998764
No 93
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.56 E-value=1.4e-14 Score=133.31 Aligned_cols=83 Identities=22% Similarity=0.324 Sum_probs=73.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
+...++|||+|||+++|+++|+++|++||.|.+|+|+. +..+|+++|||||.|.+.++|.+|+..+ |..++|+.|+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMR---DPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECC---CTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEE---CCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 44578999999999999999999999999999999994 6677899999999999999999999876 5999999999
Q ss_pred EEeecCC
Q 003204 262 IGWGKSV 268 (839)
Q Consensus 262 V~~ak~~ 268 (839)
|.|+++.
T Consensus 98 V~~a~~~ 104 (109)
T 2rs2_A 98 PKVAFPR 104 (109)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 9998865
No 94
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.55 E-value=1.1e-15 Score=134.89 Aligned_cols=80 Identities=20% Similarity=0.411 Sum_probs=72.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEee
Q 003204 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~a 265 (839)
++|||||||+++++++|+++|++||.|.+|+|++ +..+|+++|||||.|.+.+ |.+|+..|||..++|+.|+|.||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIY---DRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECC---CSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEE---cCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEc
Confidence 6899999999999999999999999999999994 6667899999999999999 99999999999999999999998
Q ss_pred cCCC
Q 003204 266 KSVA 269 (839)
Q Consensus 266 k~~~ 269 (839)
.+..
T Consensus 78 ~~~~ 81 (90)
T 2ki2_A 78 NPKK 81 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 8764
No 95
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=5.5e-15 Score=136.64 Aligned_cols=78 Identities=18% Similarity=0.230 Sum_probs=72.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
...++|||+|||+.+|+++|+++|++||.|.+|.|+ +.++||||.|.+.++|++|+..|||..++|++|+|
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 78 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP---------EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYL 78 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC---------SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe---------CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Confidence 346899999999999999999999999999999987 26789999999999999999999999999999999
Q ss_pred EeecCCC
Q 003204 263 GWGKSVA 269 (839)
Q Consensus 263 ~~ak~~~ 269 (839)
.|++...
T Consensus 79 ~~a~~~~ 85 (111)
T 1whx_A 79 EWAPIGV 85 (111)
T ss_dssp EEEETTT
T ss_pred EECCCCc
Confidence 9998654
No 96
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=9.5e-15 Score=133.37 Aligned_cols=86 Identities=10% Similarity=0.322 Sum_probs=77.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCC-eeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhC--CCEECCeEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGP-IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ--GVVVYEYEL 260 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~-I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~ln--G~~i~Gr~I 260 (839)
..++|||+|||+.+|+++|+++|++||. |.+|.|+. .+..+|+++|||||.|.+.++|..|+..|| +..++|+.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~--~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA--SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCS--SSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEc--cCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 4689999999999999999999999998 99998872 356678999999999999999999999996 589999999
Q ss_pred EEEeecCCCCC
Q 003204 261 KIGWGKSVALP 271 (839)
Q Consensus 261 kV~~ak~~~~p 271 (839)
+|.|+++...+
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999876543
No 97
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.6e-14 Score=132.42 Aligned_cols=79 Identities=22% Similarity=0.496 Sum_probs=73.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
++..++|||+|||+.+|+++|+.+|++||.|.+|+|++ .+|||||.|.+.++|.+|+..|||..++|+.|+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~---------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP---------EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 92 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeC---------CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34578999999999999999999999999999999994 279999999999999999999999999999999
Q ss_pred EEeecCCC
Q 003204 262 IGWGKSVA 269 (839)
Q Consensus 262 V~~ak~~~ 269 (839)
|.|+++.+
T Consensus 93 v~~a~~~~ 100 (109)
T 1x4g_A 93 CYWGKESP 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99998764
No 98
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.55 E-value=1.8e-14 Score=140.35 Aligned_cols=84 Identities=23% Similarity=0.409 Sum_probs=78.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
...++|||+|||+.+|+++|+++|++||.|.+|+|+. +..++.+++||||.|.+.++|++|+..|||..|+|+.|+|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGL---DKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 4578999999999999999999999999999999994 6667889999999999999999999999999999999999
Q ss_pred EeecCCC
Q 003204 263 GWGKSVA 269 (839)
Q Consensus 263 ~~ak~~~ 269 (839)
.|+++..
T Consensus 114 ~~a~~~~ 120 (156)
T 1h2v_Z 114 DWDAGFK 120 (156)
T ss_dssp EEESCCC
T ss_pred EECCCCC
Confidence 9998753
No 99
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.55 E-value=3e-14 Score=129.23 Aligned_cols=76 Identities=28% Similarity=0.473 Sum_probs=71.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
...++|||+|||+++|+++|+++|++||.|..|+|+ ++||||.|.+.++|.+|+..|||..++|+.|+|
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEI 77 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEE
Confidence 356899999999999999999999999999999987 369999999999999999999999999999999
Q ss_pred EeecCCC
Q 003204 263 GWGKSVA 269 (839)
Q Consensus 263 ~~ak~~~ 269 (839)
.|+++..
T Consensus 78 ~~a~~~~ 84 (103)
T 2dgu_A 78 VFAKPPD 84 (103)
T ss_dssp EECCCCC
T ss_pred EEcCCCc
Confidence 9998764
No 100
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=3.3e-14 Score=128.16 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=72.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
+...++|||+|||+.+|+++|+++|++||.| +|+. + .+++.+|||||.|.+.++|++|+..|||..++|+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~---~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQ---N-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCB---C-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEE---C-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 4457999999999999999999999999987 5653 2 5788999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 003204 262 IGWGKSVA 269 (839)
Q Consensus 262 V~~ak~~~ 269 (839)
|.|+++..
T Consensus 85 v~~a~~~~ 92 (101)
T 2fc9_A 85 LELQGPRG 92 (101)
T ss_dssp EEECSSCC
T ss_pred EEEcCCCC
Confidence 99998764
No 101
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.55 E-value=7.2e-15 Score=131.21 Aligned_cols=80 Identities=25% Similarity=0.461 Sum_probs=74.2
Q ss_pred CCccEEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCe
Q 003204 183 PQTTNLYVGNLSPQVDENFLL----RTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 258 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~----~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr 258 (839)
+.+++|||+|||+++++++|+ ++|++||.|.+|+|+. +|.++|||||.|.+.++|..|+..|||..++|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR------SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH------HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc------CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 457899999999999999999 9999999999999872 567889999999999999999999999999999
Q ss_pred EEEEEeecCC
Q 003204 259 ELKIGWGKSV 268 (839)
Q Consensus 259 ~IkV~~ak~~ 268 (839)
.|+|.|+++.
T Consensus 80 ~l~v~~a~~~ 89 (97)
T 1nu4_A 80 PMRIQYAKTD 89 (97)
T ss_dssp ECEEEECSSC
T ss_pred EEEEEEccCC
Confidence 9999998865
No 102
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.2e-14 Score=133.27 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=69.8
Q ss_pred CccEEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCC--CEECCeEE
Q 003204 184 QTTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG--VVVYEYEL 260 (839)
Q Consensus 184 ~~ttLfVgNLp~-~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG--~~i~Gr~I 260 (839)
..++|||+|||+ .+|+++|+++|++||.|.+|+|+. .++||||+|.+.++|..|+..||| ..+.|++|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~---------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN---------KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS---------SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc---------CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 468999999999 999999999999999999999983 468999999999999999999886 45999999
Q ss_pred EEEeecCC
Q 003204 261 KIGWGKSV 268 (839)
Q Consensus 261 kV~~ak~~ 268 (839)
+|.|++..
T Consensus 85 ~V~~a~~~ 92 (102)
T 1x4d_A 85 RVHLSQKY 92 (102)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 99999854
No 103
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.55 E-value=4e-15 Score=134.53 Aligned_cols=82 Identities=16% Similarity=0.271 Sum_probs=73.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCcc-ccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEE-ERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~-~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~I 260 (839)
.+..++|||||||+++++++|+++|++|| |.+|+|+. +. .+|+++|||||.|.+.++|.+|+ .|||..++|+.|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~---~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPR---EPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSC---CTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEe---cCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 34579999999999999999999999999 99999984 44 57899999999999999999999 999999999999
Q ss_pred EEEeecCC
Q 003204 261 KIGWGKSV 268 (839)
Q Consensus 261 kV~~ak~~ 268 (839)
+|.|+++.
T Consensus 91 ~V~~a~~~ 98 (100)
T 2j76_E 91 RVDVADQA 98 (100)
T ss_dssp CCEECCCS
T ss_pred EEEeccCC
Confidence 99998764
No 104
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.4e-14 Score=136.30 Aligned_cols=80 Identities=13% Similarity=0.171 Sum_probs=72.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCC--CEECCeE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG--VVVYEYE 259 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG--~~i~Gr~ 259 (839)
.+.+++|||+|||+++|+++|+++|++||.|.+|+|+. .||||||+|.+.++|.+|+..|++ ..+.|++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~---------~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK---------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG---------GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 34578999999999999999999999999999999993 379999999999999999999884 6899999
Q ss_pred EEEEeecCCCC
Q 003204 260 LKIGWGKSVAL 270 (839)
Q Consensus 260 IkV~~ak~~~~ 270 (839)
|+|.|+++..+
T Consensus 99 l~V~~a~~k~~ 109 (119)
T 2ad9_A 99 IYIQFSNHKEL 109 (119)
T ss_dssp CEEEECSSSSC
T ss_pred EEEEEccCCCC
Confidence 99999987754
No 105
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=9.3e-15 Score=136.20 Aligned_cols=80 Identities=16% Similarity=0.231 Sum_probs=71.9
Q ss_pred CCCCccEEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhC--CCEECC
Q 003204 181 GDPQTTNLYVGNLSPQ-VDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ--GVVVYE 257 (839)
Q Consensus 181 ~dp~~ttLfVgNLp~~-vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~ln--G~~i~G 257 (839)
..+..++|||+|||++ +|+++|+++|++||.|.+|+|+ +.+|||||+|.+.++|+.|+..|+ +..+.|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~---------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G 91 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM---------RMKSQAFIEMETREDAMAMVDHCLKKALWFQG 91 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE---------TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSS
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe---------cCCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 3556789999999998 9999999999999999999998 357999999999999999999886 456999
Q ss_pred eEEEEEeecCCC
Q 003204 258 YELKIGWGKSVA 269 (839)
Q Consensus 258 r~IkV~~ak~~~ 269 (839)
++|+|.|++...
T Consensus 92 r~l~V~~a~~~~ 103 (112)
T 1x4f_A 92 RCVKVDLSEKYK 103 (112)
T ss_dssp SCCEEEEECSCS
T ss_pred EEEEEEECcccc
Confidence 999999998653
No 106
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.1e-14 Score=128.64 Aligned_cols=77 Identities=29% Similarity=0.471 Sum_probs=71.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEEC--CeEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY--EYEL 260 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~--Gr~I 260 (839)
+..++|||+|||+++|+++|+++|++||.|.+|+|+. .++||||.|.+.++|++|+..|||..+. |+.|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~---------~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l 85 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK---------GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRL 85 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS---------SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC---------CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEE
Confidence 3568999999999999999999999999999999983 2789999999999999999999999999 9999
Q ss_pred EEEeecCC
Q 003204 261 KIGWGKSV 268 (839)
Q Consensus 261 kV~~ak~~ 268 (839)
+|.|+++.
T Consensus 86 ~V~~a~~~ 93 (97)
T 1why_A 86 RVDFAKSG 93 (97)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99998865
No 107
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.54 E-value=9.4e-15 Score=133.39 Aligned_cols=80 Identities=16% Similarity=0.235 Sum_probs=73.9
Q ss_pred CccEEEEcCCCCCC------CHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECC
Q 003204 184 QTTNLYVGNLSPQV------DENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 257 (839)
Q Consensus 184 ~~ttLfVgNLp~~v------tEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~G 257 (839)
..++|||||||+.+ |+++|+.+|++||.|.+|+|+ ..+|+++|||||.|.+.++|.+|+..|||..++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-----~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-----EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-----CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-----CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 46899999999999 789999999999999999987 2568899999999999999999999999999999
Q ss_pred e-EEEEEeecCC
Q 003204 258 Y-ELKIGWGKSV 268 (839)
Q Consensus 258 r-~IkV~~ak~~ 268 (839)
+ +|+|.|+...
T Consensus 89 ~~~l~V~~a~~~ 100 (105)
T 2nlw_A 89 QHTFRVNLFTDF 100 (105)
T ss_dssp TCEEEEECSCCC
T ss_pred CceEEEEEcchH
Confidence 8 9999998754
No 108
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.7e-14 Score=128.40 Aligned_cols=79 Identities=25% Similarity=0.437 Sum_probs=73.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
.+..++|||+|||+.+|+++|+.+|++||.|..|+|+. .++||||.|.+.++|.+|+..|||..++|++|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~---------~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 82 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK---------DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLR 82 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET---------TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec---------CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEE
Confidence 34568999999999999999999999999999999983 479999999999999999999999999999999
Q ss_pred EEeecCCC
Q 003204 262 IGWGKSVA 269 (839)
Q Consensus 262 V~~ak~~~ 269 (839)
|.|+++..
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpj_A 83 VRFACHSA 90 (99)
T ss_dssp EEESSCCS
T ss_pred EEEcCCCC
Confidence 99988653
No 109
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.3e-14 Score=126.70 Aligned_cols=76 Identities=18% Similarity=0.390 Sum_probs=71.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
+..++|||+|||+++|+++|+++|++||.|.+|+|+ ++||||.|.+.++|++|+..|||..++|++|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 74 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINV 74 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEE
Confidence 356899999999999999999999999999999997 489999999999999999999999999999999
Q ss_pred EeecCCC
Q 003204 263 GWGKSVA 269 (839)
Q Consensus 263 ~~ak~~~ 269 (839)
.|+++..
T Consensus 75 ~~a~~~~ 81 (90)
T 2dnq_A 75 EASKNKS 81 (90)
T ss_dssp ECSSCCC
T ss_pred EECCCCC
Confidence 9988764
No 110
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.54 E-value=3.8e-15 Score=126.96 Aligned_cols=75 Identities=19% Similarity=0.327 Sum_probs=70.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEee
Q 003204 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (839)
Q Consensus 187 tLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~a 265 (839)
+|||+|||+++|+++|+++|++||.|.+|+|+. +..+|+++|||||.|.+.++|++|+. |||..++|++|+|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMF---DKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCB---CSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEe---cCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999984 55678999999999999999999996 9999999999999985
No 111
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.3e-14 Score=131.01 Aligned_cols=82 Identities=23% Similarity=0.379 Sum_probs=75.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEE------
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV------ 255 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i------ 255 (839)
+...++|||+|||+.+|+++|+++|++||.|.+|+|+. +. +|+++|||||.|.+.++|++|+..|||..+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILR---DS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEE---CS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEE---CC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 44578999999999999999999999999999999994 44 788999999999999999999999999999
Q ss_pred --CCeEEEEEeecC
Q 003204 256 --YEYELKIGWGKS 267 (839)
Q Consensus 256 --~Gr~IkV~~ak~ 267 (839)
.|++|+|.|+++
T Consensus 98 ~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 98 SAPTEPLLCKFSGP 111 (114)
T ss_dssp CCCSSCBEEEECCC
T ss_pred cCCCCceeEEccCC
Confidence 578899999874
No 112
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=4.4e-15 Score=126.82 Aligned_cols=76 Identities=24% Similarity=0.388 Sum_probs=71.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEee
Q 003204 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~a 265 (839)
++|||+|||+++++++|+++|++||.|.+|+|+. +..+|+++|||||.|.+.++|++|+..++ ..++|+.|+|.||
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMR---DPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEEC---CCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEec---CCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5899999999999999999999999999999984 55678999999999999999999999999 9999999999996
No 113
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.6e-14 Score=126.35 Aligned_cols=76 Identities=22% Similarity=0.352 Sum_probs=70.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
.+..++|||+|||+++|+++|+.+|++||.|.+|+|+ ++||||.|.+.++|.+|+..|||..++|+.|+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 74 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRIN 74 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----------SSCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3457899999999999999999999999999999998 24999999999999999999999999999999
Q ss_pred EEeecCC
Q 003204 262 IGWGKSV 268 (839)
Q Consensus 262 V~~ak~~ 268 (839)
|.|+++.
T Consensus 75 v~~a~~~ 81 (90)
T 2dnp_A 75 VELSTKG 81 (90)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 9998865
No 114
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.54 E-value=1.2e-14 Score=135.16 Aligned_cols=80 Identities=9% Similarity=-0.010 Sum_probs=72.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG-~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~I 260 (839)
.+..++|||+|||+++|+++|+++|++|| .|..|+|+. ++++|||||.|.+.++|++|+..|||..++|+.|
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-------~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i 97 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-------RDFDGTGALEFPSEEILVEALERLNNIEFRGSVI 97 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-------CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-------CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 34568999999999999999999999999 899999862 2478999999999999999999999999999999
Q ss_pred EEEeecCC
Q 003204 261 KIGWGKSV 268 (839)
Q Consensus 261 kV~~ak~~ 268 (839)
+|.|++..
T Consensus 98 ~V~~a~~~ 105 (111)
T 2jvr_A 98 TVERDDNP 105 (111)
T ss_dssp EEEESCC-
T ss_pred EEEECCCC
Confidence 99998743
No 115
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.53 E-value=1.6e-14 Score=135.08 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=75.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..++|||+|||+++|+++|+++|++||.|.+|+|++ +..+|+++|||||.|.+.++|.+|+ .|||..++|+.|+|.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 110 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILC---DKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVL 110 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEE---ECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---cCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 468999999999999999999999999999999994 5678899999999999999999999 899999999999999
Q ss_pred eecCC
Q 003204 264 WGKSV 268 (839)
Q Consensus 264 ~ak~~ 268 (839)
|+++.
T Consensus 111 ~a~~~ 115 (124)
T 2jwn_A 111 PKRTN 115 (124)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 98854
No 116
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3e-14 Score=131.76 Aligned_cols=83 Identities=22% Similarity=0.321 Sum_probs=76.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
...++|||+|||+.+|+++|+++|++||.|..|+|++ +..+|+++|||||.|.+.++|++|+.. +|..|+|+.|+|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V 100 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMR---DPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEP 100 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEEC---CTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEE---CCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEE
Confidence 3468999999999999999999999999999999994 667789999999999999999999977 999999999999
Q ss_pred EeecCCC
Q 003204 263 GWGKSVA 269 (839)
Q Consensus 263 ~~ak~~~ 269 (839)
.|+++..
T Consensus 101 ~~a~~~~ 107 (116)
T 1x4b_A 101 KRAVARE 107 (116)
T ss_dssp ECCSSCC
T ss_pred EECCCCc
Confidence 9988653
No 117
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.53 E-value=2.2e-14 Score=141.33 Aligned_cols=84 Identities=14% Similarity=0.327 Sum_probs=77.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
...++|||+|||+.+|+++|..+|++||.|..|.|+. +..+|.++|||||.|.+.++|..|+..|||..|.|+.|+|
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNL---DRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEe---cCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3568999999999999999999999999999999994 5678899999999999999999999999999999999999
Q ss_pred EeecCCC
Q 003204 263 GWGKSVA 269 (839)
Q Consensus 263 ~~ak~~~ 269 (839)
.|+++.+
T Consensus 147 ~~a~~~~ 153 (165)
T 1rk8_A 147 DWCFVKG 153 (165)
T ss_dssp EESEECC
T ss_pred EEecCCC
Confidence 9988653
No 118
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.53 E-value=3.7e-14 Score=127.80 Aligned_cols=77 Identities=25% Similarity=0.413 Sum_probs=71.3
Q ss_pred CCCCccEEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeE
Q 003204 181 GDPQTTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (839)
Q Consensus 181 ~dp~~ttLfVgNLp~-~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~ 259 (839)
..+.+++|||||||+ ++++++|+++|++||.|.+|+|. +|||||.|.+.++|.+|+..|||..++|+.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------NAFGFIQFDNPQSVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----------SSEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 345679999999998 99999999999999999999985 689999999999999999999999999999
Q ss_pred EEEEeecCC
Q 003204 260 LKIGWGKSV 268 (839)
Q Consensus 260 IkV~~ak~~ 268 (839)
|+|.|++..
T Consensus 87 l~V~~a~~~ 95 (97)
T 2xnq_A 87 LILEVSSSN 95 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCCC
Confidence 999998864
No 119
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.2e-14 Score=128.62 Aligned_cols=79 Identities=23% Similarity=0.469 Sum_probs=72.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
.+..++|||+|||+.+|+++|+++|++||.|. ++|++ ++++|||||.|.+.++|++|+..|||..++|+.|+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~-------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW-------QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLR 87 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE-------ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc-------CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34568999999999999999999999999997 77772 46789999999999999999999999999999999
Q ss_pred EEeecCC
Q 003204 262 IGWGKSV 268 (839)
Q Consensus 262 V~~ak~~ 268 (839)
|.|+++.
T Consensus 88 V~~a~~~ 94 (97)
T 2e5j_A 88 VALARQQ 94 (97)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9998865
No 120
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.52 E-value=7e-15 Score=140.78 Aligned_cols=85 Identities=27% Similarity=0.409 Sum_probs=78.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
....++|||+|||+.+|+++|+++|++||.|..|+|+. +..+|+++|||||.|.+.++|++|+..|||..+.|++|+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPR---DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCC---CSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34578999999999999999999999999999999984 556789999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 003204 262 IGWGKSVA 269 (839)
Q Consensus 262 V~~ak~~~ 269 (839)
|.|+++..
T Consensus 121 V~~a~~~~ 128 (135)
T 2lea_A 121 VQMARYGR 128 (135)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998754
No 121
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.2e-14 Score=132.88 Aligned_cols=81 Identities=10% Similarity=0.047 Sum_probs=74.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCe-eEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPI-ASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I-~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
...++|||+|||+++|+++|+++|+.||.| .+|+|++ +. +|+++|||||.|.+.++|++|+.. ||..|+|+.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~---d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLV---DN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECC---CT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEE---CC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 346899999999999999999999999999 8999994 55 889999999999999999999966 99999999999
Q ss_pred EEeecCC
Q 003204 262 IGWGKSV 268 (839)
Q Consensus 262 V~~ak~~ 268 (839)
|.|+.+.
T Consensus 88 v~~a~~~ 94 (114)
T 2cpy_A 88 VHVVTLE 94 (114)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998754
No 122
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.52 E-value=3.2e-14 Score=130.92 Aligned_cols=79 Identities=29% Similarity=0.491 Sum_probs=72.2
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCe
Q 003204 179 DDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 258 (839)
Q Consensus 179 d~~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr 258 (839)
...+...++|||||||+++|+++|+++|++||.|..|+|+ +|||||.|.+.++|++|+..|||..++|+
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----------NGFAFVEFEEAESAAKAIEEVHGKSFANQ 93 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----------TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3445668999999999999999999999999999999987 58999999999999999999999999999
Q ss_pred EEEEEeecCC
Q 003204 259 ELKIGWGKSV 268 (839)
Q Consensus 259 ~IkV~~ak~~ 268 (839)
.|+|.|+++.
T Consensus 94 ~l~V~~a~~~ 103 (108)
T 2jvo_A 94 PLEVVYSKLP 103 (108)
T ss_dssp ECEEESCSCC
T ss_pred EEEEEEecCC
Confidence 9999998865
No 123
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.1e-13 Score=124.55 Aligned_cols=77 Identities=29% Similarity=0.451 Sum_probs=71.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccC--CCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRF--GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~f--G~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~ 259 (839)
.+..++|||+|||+.+|+++|+++|++| |.|.+|+++ ++||||.|.+.++|.+|+..|||..++|+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3457899999999999999999999999 999999876 479999999999999999999999999999
Q ss_pred EEEEeecCCC
Q 003204 260 LKIGWGKSVA 269 (839)
Q Consensus 260 IkV~~ak~~~ 269 (839)
|+|.|+++..
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpd_A 81 IEVTLAKPVD 90 (99)
T ss_dssp EEEECCCCCC
T ss_pred EEEEECCCCC
Confidence 9999998754
No 124
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.51 E-value=2.7e-14 Score=131.75 Aligned_cols=79 Identities=22% Similarity=0.387 Sum_probs=72.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
.+++|||+|||+.+|+++|+.+|++||.|.+|+|+. .+.++|||||.|.+.++|.+|+..|||..++|+.|+|.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGN------TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEC------STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee------CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 468999999999999999999999999999999984 24568999999999999999999999999999999999
Q ss_pred eecCC
Q 003204 264 WGKSV 268 (839)
Q Consensus 264 ~ak~~ 268 (839)
|+++.
T Consensus 81 ~a~~~ 85 (115)
T 3lqv_A 81 YYNAN 85 (115)
T ss_dssp ECCHH
T ss_pred EecCC
Confidence 98753
No 125
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=1.7e-13 Score=125.57 Aligned_cols=75 Identities=13% Similarity=0.179 Sum_probs=70.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECC-----e
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE-----Y 258 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~G-----r 258 (839)
..++|||+|||+++|+++|+++|++||.|..|+|+. + +||||+|.+.++|++|+..|||..++| +
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~---~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR---D-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEET---T-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEec---C-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 468999999999999999999999999999999983 1 899999999999999999999999999 9
Q ss_pred EEEEEeecCC
Q 003204 259 ELKIGWGKSV 268 (839)
Q Consensus 259 ~IkV~~ak~~ 268 (839)
.|+|.|+++.
T Consensus 84 ~i~V~~a~~~ 93 (108)
T 1x4c_A 84 YIRVKVDGPR 93 (108)
T ss_dssp EEEEEESSCC
T ss_pred EEEEEeCCCC
Confidence 9999998874
No 126
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=6.3e-14 Score=127.69 Aligned_cols=82 Identities=10% Similarity=0.086 Sum_probs=74.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeE-EEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIAS-VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~s-VkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
...++|||+|||+.+|+++|+++|+.||.|.. |+|+. + .+|+++|||||.|.+.++|++|+.. ||..++|+.|+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~---~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPV---D-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCB---C-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEE---C-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 45689999999999999999999999999987 88874 4 6889999999999999999999976 99999999999
Q ss_pred EEeecCCC
Q 003204 262 IGWGKSVA 269 (839)
Q Consensus 262 V~~ak~~~ 269 (839)
|.++....
T Consensus 88 v~~~~~~~ 95 (104)
T 1wg5_A 88 IFKSSRAE 95 (104)
T ss_dssp EEEECTTT
T ss_pred EEECCHHH
Confidence 99987553
No 127
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.3e-14 Score=126.22 Aligned_cols=76 Identities=24% Similarity=0.378 Sum_probs=69.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCC-eeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCC-CEECCeEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGP-IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG-VVVYEYEL 260 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~-I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG-~~i~Gr~I 260 (839)
+..++|||+|||+++|+++|+++|++||. |..+.++ +++||||.|.+.++|++|+..||| ..++|+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 75 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIM 75 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEE
Confidence 34689999999999999999999999999 6666664 479999999999999999999999 99999999
Q ss_pred EEEeecCC
Q 003204 261 KIGWGKSV 268 (839)
Q Consensus 261 kV~~ak~~ 268 (839)
+|.|+++.
T Consensus 76 ~v~~a~~~ 83 (93)
T 2cqh_A 76 EVDYSVSK 83 (93)
T ss_dssp EEEECCCC
T ss_pred EEEEccCc
Confidence 99998865
No 128
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.51 E-value=1e-14 Score=126.60 Aligned_cols=72 Identities=18% Similarity=0.291 Sum_probs=67.1
Q ss_pred cEEEEcCCCCCC------CHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCe-
Q 003204 186 TNLYVGNLSPQV------DENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY- 258 (839)
Q Consensus 186 ttLfVgNLp~~v------tEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr- 258 (839)
++|||||||+.+ |+++|+++|++||.|.+|+|+ ..+|+++|||||.|.+.++|.+|+..|||..++|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 76 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-----EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 76 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-----CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-----CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCce
Confidence 789999999999 789999999999999999987 25788999999999999999999999999999999
Q ss_pred EEEE
Q 003204 259 ELKI 262 (839)
Q Consensus 259 ~IkV 262 (839)
+|+|
T Consensus 77 ~l~V 80 (81)
T 2krb_A 77 TFRV 80 (81)
T ss_dssp CCCC
T ss_pred eEEe
Confidence 8876
No 129
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=2.6e-14 Score=128.09 Aligned_cols=76 Identities=26% Similarity=0.424 Sum_probs=71.0
Q ss_pred CCccEEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 183 PQTTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 183 p~~ttLfVgNLp~-~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
+..++|||+|||+ .+|+++|+.+|++||.|.+|+|. +|||||.|.+.++|..|+..|||..+.|++|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLI 76 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 4578999999999 99999999999999999999985 58999999999999999999999999999999
Q ss_pred EEeecCCC
Q 003204 262 IGWGKSVA 269 (839)
Q Consensus 262 V~~ak~~~ 269 (839)
|.|+++..
T Consensus 77 V~~a~~~~ 84 (96)
T 2kvi_A 77 LEVSSSNA 84 (96)
T ss_dssp EEEEECCC
T ss_pred EEEcCcCC
Confidence 99998764
No 130
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.1e-13 Score=124.75 Aligned_cols=82 Identities=24% Similarity=0.414 Sum_probs=73.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
.+..++|||+|||+.+|+++|+++|+.|+ .|+++. +..+++++|||||.|.+.++|++|+..|||..|.|+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVT---DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEE---CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEe---cCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34578999999999999999999999884 577773 556788999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 003204 262 IGWGKSVA 269 (839)
Q Consensus 262 V~~ak~~~ 269 (839)
|.|+++..
T Consensus 86 V~~a~~~~ 93 (102)
T 2fc8_A 86 LDWAKPKG 93 (102)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99988653
No 131
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.4e-13 Score=121.83 Aligned_cols=76 Identities=25% Similarity=0.435 Sum_probs=70.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
...++|||+|| ++|+++|+++|++||.|.+|+|. +.+|||||.|.+.++|.+|+..|||..++|++|+|
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 35689999996 89999999999999999999996 46899999999999999999999999999999999
Q ss_pred EeecCCC
Q 003204 263 GWGKSVA 269 (839)
Q Consensus 263 ~~ak~~~ 269 (839)
.|+++.+
T Consensus 82 ~~a~~~~ 88 (97)
T 1x5p_A 82 NIARKQP 88 (97)
T ss_dssp ECCSSCC
T ss_pred EECCCCC
Confidence 9998754
No 132
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.50 E-value=4.9e-14 Score=131.64 Aligned_cols=81 Identities=12% Similarity=0.057 Sum_probs=73.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGP---IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~---I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~ 259 (839)
...++|||+|||+++|+++|+++|+.||. |.+|+|+. +.. |+++|||||.|.+.++|++|+. |||..|+|+.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~---~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIY---TRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEE---CSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEE---CCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 35689999999999999999999999999 89999984 433 8899999999999999999997 9999999999
Q ss_pred EEEEeecCC
Q 003204 260 LKIGWGKSV 268 (839)
Q Consensus 260 IkV~~ak~~ 268 (839)
|+|.++...
T Consensus 90 i~V~~a~~~ 98 (118)
T 2db1_A 90 IEVFKSHRT 98 (118)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999998643
No 133
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.49 E-value=1.9e-14 Score=129.96 Aligned_cols=82 Identities=24% Similarity=0.404 Sum_probs=74.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
+...++|||+|||+++++++|+++|++||.|.+|+|++ +. +|+++|||||.|.+.++|++|+. +|..++|+.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~ 79 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIIT---DR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLK 79 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEE---CT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEE---CC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEE
Confidence 34568999999999999999999999999999999994 44 78899999999999999999996 99999999999
Q ss_pred EEeecCCC
Q 003204 262 IGWGKSVA 269 (839)
Q Consensus 262 V~~ak~~~ 269 (839)
|+|+.+..
T Consensus 80 v~~a~~~~ 87 (102)
T 2xs2_A 80 LGPAIRKQ 87 (102)
T ss_dssp EEEEEECC
T ss_pred EEECCcCc
Confidence 99987653
No 134
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2e-14 Score=134.89 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=73.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
...++|||+|||+++|+++|+++|+.||.|..+.++. +..+|+++|||||.|.+.++|.+|+. |||..|+|+.|+|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~---~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIA---YGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEE---ECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEE---ECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 3568999999999999999999999999998855552 55688999999999999999999998 9999999999999
Q ss_pred EeecCC
Q 003204 263 GWGKSV 268 (839)
Q Consensus 263 ~~ak~~ 268 (839)
.|+...
T Consensus 99 ~~a~~~ 104 (124)
T 1wel_A 99 HPITKK 104 (124)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998753
No 135
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=3.6e-14 Score=127.89 Aligned_cols=76 Identities=25% Similarity=0.462 Sum_probs=71.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEee
Q 003204 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~a 265 (839)
|+|||+|||+++|+++|+++|++||.|.+|+|+. + ++|||||.|.+.++|++|+..|||..++|+.|+|.|+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIAR---N-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEES---S-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee---C-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 6899999999999999999999999999999984 2 6899999999999999999999999999999999999
Q ss_pred cCCC
Q 003204 266 KSVA 269 (839)
Q Consensus 266 k~~~ 269 (839)
++.+
T Consensus 73 ~~~~ 76 (101)
T 2hvz_A 73 TGMP 76 (101)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 8764
No 136
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.49 E-value=8.2e-15 Score=132.16 Aligned_cols=80 Identities=23% Similarity=0.336 Sum_probs=73.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..++|||+|||+++|+++|+++|++||.|.. .++ .+..+|+++|||||.|.+.++|++|+. |||..+.|+.|+|.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~---~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAV---VDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCC---CEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEE---ecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 4689999999999999999999999999988 555 366788999999999999999999998 99999999999999
Q ss_pred eecCC
Q 003204 264 WGKSV 268 (839)
Q Consensus 264 ~ak~~ 268 (839)
|+++.
T Consensus 91 ~a~~~ 95 (101)
T 1fj7_A 91 KPKGR 95 (101)
T ss_dssp CCSCC
T ss_pred EcCCC
Confidence 98865
No 137
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.5e-14 Score=131.96 Aligned_cols=77 Identities=21% Similarity=0.305 Sum_probs=70.7
Q ss_pred CccEEEE--cCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEE-----C
Q 003204 184 QTTNLYV--GNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV-----Y 256 (839)
Q Consensus 184 ~~ttLfV--gNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i-----~ 256 (839)
.+++||| |||++++|+++|+++|++||.|.+|.|+. .||||||.|.+.++|++|+..|||..+ .
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3678999 88999999999999999999999998872 378999999999999999999999998 7
Q ss_pred CeEEEEEeecCCC
Q 003204 257 EYELKIGWGKSVA 269 (839)
Q Consensus 257 Gr~IkV~~ak~~~ 269 (839)
|++|+|.|++.++
T Consensus 95 g~~l~v~~a~~~p 107 (114)
T 2cq2_A 95 KITLYLNFVEKVQ 107 (114)
T ss_dssp EEECEEEEESCCC
T ss_pred CcEEEEEecccCc
Confidence 9999999998775
No 138
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.1e-14 Score=129.20 Aligned_cols=80 Identities=31% Similarity=0.453 Sum_probs=72.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCee----EEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCe
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIA----SVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 258 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~----sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr 258 (839)
+.+++|||+|||+.+|+++|+++|++||.|. .++++ +|+++|||||.|.+.++|.+|+..|||..++|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-------~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 95 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-------TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK 95 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-------CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-------CCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 3578999999999999999999999999994 45444 678899999999999999999999999999999
Q ss_pred EEEEEeecCCC
Q 003204 259 ELKIGWGKSVA 269 (839)
Q Consensus 259 ~IkV~~ak~~~ 269 (839)
.|+|.|+++..
T Consensus 96 ~l~v~~a~~~~ 106 (115)
T 2cpx_A 96 ILVIEFGKNKK 106 (115)
T ss_dssp BCEEEECCCCS
T ss_pred EEEEEEccCCC
Confidence 99999998753
No 139
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.48 E-value=2.8e-14 Score=148.57 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=76.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFG--PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG--~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
..++|||+||++++|+++|+++|++|| .|.+|+|+. +..+|+++|||||+|.+.++|++||..|||..|+|+.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~---d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFE---NRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEE---CTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeE
Confidence 468999999999999999999999999 999999994 667899999999999999999999999999999999999
Q ss_pred EEeecCC
Q 003204 262 IGWGKSV 268 (839)
Q Consensus 262 V~~ak~~ 268 (839)
|.|+++.
T Consensus 144 V~~a~~~ 150 (229)
T 3q2s_C 144 VTPVNKQ 150 (229)
T ss_dssp EEECCHH
T ss_pred EEECCCC
Confidence 9998754
No 140
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=7.7e-14 Score=124.43 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=71.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
.+..++|||+|||+.+|+++|+++|++||.|..+ ..+|+++|||||.|.+.++|.+|+..|||..++|+.|+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--------~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--------SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--------EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--------CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3457899999999999999999999999988766 23577899999999999999999999999999999999
Q ss_pred EEeecCC
Q 003204 262 IGWGKSV 268 (839)
Q Consensus 262 V~~ak~~ 268 (839)
|.|+++.
T Consensus 85 v~~a~~~ 91 (96)
T 1fjc_A 85 LYYTGEK 91 (96)
T ss_dssp EEECSSS
T ss_pred EEEcCCC
Confidence 9998765
No 141
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.48 E-value=1.5e-13 Score=121.09 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=70.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..++|||+|||+.+++++|+++|++| .|.+|+|. +++|||||.|.+.++|++|+..|||..++|++|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 73 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQ 73 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 46899999999999999999999999 99999985 478999999999999999999999999999999999
Q ss_pred eecCCC
Q 003204 264 WGKSVA 269 (839)
Q Consensus 264 ~ak~~~ 269 (839)
|+....
T Consensus 74 ~a~~~~ 79 (88)
T 1wg1_A 74 LQPTDA 79 (88)
T ss_dssp ECCCCC
T ss_pred EcCCCc
Confidence 986543
No 142
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.47 E-value=1.9e-14 Score=138.09 Aligned_cols=85 Identities=25% Similarity=0.404 Sum_probs=72.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEE--EEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASV--KIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sV--kI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
.+++|||||||+.+|+++|+.+|++||.|.+| +++.......+|+++|||||.|.+.++|.+|+..|||..++|+.|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 46899999999999999999999999999875 1121000134788999999999999999999999999999999999
Q ss_pred EEeecCC
Q 003204 262 IGWGKSV 268 (839)
Q Consensus 262 V~~ak~~ 268 (839)
|.|+++.
T Consensus 124 V~~a~~~ 130 (143)
T 3egn_A 124 VQFARSA 130 (143)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999864
No 143
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.9e-13 Score=131.61 Aligned_cols=82 Identities=35% Similarity=0.611 Sum_probs=76.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
...++|||+|||+.+|+++|+++|++||.|.+|+|+. +..+|.++|||||.|.+.++|.+|+..|||..++|++|+|
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMW---DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEE---CTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEe---cCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 4578999999999999999999999999999999994 5577899999999999999999999999999999999999
Q ss_pred EeecC
Q 003204 263 GWGKS 267 (839)
Q Consensus 263 ~~ak~ 267 (839)
.||+.
T Consensus 162 ~~a~~ 166 (166)
T 3md3_A 162 NWAAK 166 (166)
T ss_dssp EESCC
T ss_pred EecCC
Confidence 99863
No 144
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=8.3e-14 Score=126.97 Aligned_cols=80 Identities=16% Similarity=0.140 Sum_probs=72.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
...++|||+|||+++|+++|+++|+.||.| +|+|++ +. +|+++|||||+|.+.++|++|+ .+|+..|+|+.|+|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~---d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V 86 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEI---GP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVEL 86 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEE---SS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEE---CC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEE
Confidence 346899999999999999999999999955 999985 44 7899999999999999999999 68999999999999
Q ss_pred EeecCC
Q 003204 263 GWGKSV 268 (839)
Q Consensus 263 ~~ak~~ 268 (839)
.++...
T Consensus 87 ~~~~~~ 92 (102)
T 1wez_A 87 FLNSTA 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 987654
No 145
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.21 E-value=3.6e-15 Score=138.14 Aligned_cols=84 Identities=17% Similarity=0.284 Sum_probs=77.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIAS--------VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 253 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~s--------VkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~ 253 (839)
.+..++|||+|||+.+++++|+++|++||.|.. |+|+. +..+|+++|||||.|.+.++|.+|+..|||.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYT---DRETGKLKGEATVSFDDPPSAKAAIDWFDGK 80 (116)
Confidence 345789999999999999999999999999999 88884 6677889999999999999999999999999
Q ss_pred EECCeEEEEEeecCC
Q 003204 254 VVYEYELKIGWGKSV 268 (839)
Q Consensus 254 ~i~Gr~IkV~~ak~~ 268 (839)
.+.|+.|+|.|+++.
T Consensus 81 ~~~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 81 EFSGNPIKVSFATRR 95 (116)
Confidence 999999999998865
No 146
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.47 E-value=2e-13 Score=125.27 Aligned_cols=76 Identities=21% Similarity=0.377 Sum_probs=70.6
Q ss_pred CCCccEEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Q 003204 182 DPQTTNLYVGNLSPQ-VDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (839)
Q Consensus 182 dp~~ttLfVgNLp~~-vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~I 260 (839)
.+..++|||+|||+. +|+++|+++|++||.|..|+|. ++||||.|.+.++|++|+..|||..++|+.|
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 92 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH-----------KGYAFVQYSNERHARAAVLGENGRVLAGQTL 92 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE-----------TTEEEEECSSSHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 345689999999999 9999999999999999999883 6899999999999999999999999999999
Q ss_pred EEEeecCC
Q 003204 261 KIGWGKSV 268 (839)
Q Consensus 261 kV~~ak~~ 268 (839)
+|.|++..
T Consensus 93 ~V~~a~~~ 100 (110)
T 1wf1_A 93 DINMAGEP 100 (110)
T ss_dssp CEEESCCC
T ss_pred EEEECCCC
Confidence 99998754
No 147
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.47 E-value=6.3e-14 Score=134.81 Aligned_cols=81 Identities=12% Similarity=0.039 Sum_probs=73.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCe
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGP---IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 258 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~---I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr 258 (839)
....++|||+|||+++|+++|+++|+.||. |.+|+|++ +.. |+++|||||.|.+.++|++|+. |||..++|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~---d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr 115 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIY---TRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHR 115 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEE---CSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEE---CCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCE
Confidence 345789999999999999999999999999 89999995 444 8999999999999999999998 999999999
Q ss_pred EEEEEeecC
Q 003204 259 ELKIGWGKS 267 (839)
Q Consensus 259 ~IkV~~ak~ 267 (839)
.|+|.++.+
T Consensus 116 ~i~V~~a~~ 124 (136)
T 2hgl_A 116 YIEVFKSHR 124 (136)
T ss_dssp EEEEEECCH
T ss_pred EEEEEECCh
Confidence 999999753
No 148
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2e-13 Score=121.63 Aligned_cols=76 Identities=20% Similarity=0.269 Sum_probs=67.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..++|||||||+++|+++|+.+|++||.|.+| ++ +..+|+ ||||.|.+.++|.+|+. |||..++|+.|+|.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~----~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VM----DKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVR 77 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EE----CSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCB
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EE----cCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEE
Confidence 35799999999999999999999999999998 44 344444 99999999999999998 99999999999999
Q ss_pred eecCC
Q 003204 264 WGKSV 268 (839)
Q Consensus 264 ~ak~~ 268 (839)
++.+.
T Consensus 78 ~a~~~ 82 (94)
T 2e5g_A 78 PREQK 82 (94)
T ss_dssp CSCCS
T ss_pred ECCcC
Confidence 87654
No 149
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.46 E-value=1.9e-14 Score=122.42 Aligned_cols=75 Identities=21% Similarity=0.370 Sum_probs=69.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEee
Q 003204 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (839)
Q Consensus 187 tLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~a 265 (839)
+|||+|||+++|+++|+++|++||.|.+|+|+. +..+|+++|||||.|.+.++|.+|+. ++|..++|+.|+|.||
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPM---DNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCC---SCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 589999999999999999999999999999984 66678999999999999999999996 5999999999999885
No 150
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.46 E-value=2.8e-14 Score=130.63 Aligned_cols=80 Identities=9% Similarity=0.050 Sum_probs=73.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGP---IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~---I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~ 259 (839)
...++|||+|||+++|+++|+++|+.||. |.+|+|+. +.. |+++|||||.|.+.++|++|+. |||..++|+.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~---~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLL---NRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCC---CTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEE---CCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 35689999999999999999999999998 89999984 444 8999999999999999999997 9999999999
Q ss_pred EEEEeecC
Q 003204 260 LKIGWGKS 267 (839)
Q Consensus 260 IkV~~ak~ 267 (839)
|+|.++.+
T Consensus 84 i~V~~a~~ 91 (107)
T 2lmi_A 84 VEVYEINN 91 (107)
T ss_dssp CCCEECCH
T ss_pred EEEEECCH
Confidence 99999764
No 151
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.46 E-value=1.3e-13 Score=140.85 Aligned_cols=81 Identities=32% Similarity=0.542 Sum_probs=75.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..++|||||||+++|+++|+++|++||.|.+|+|++ +..+|+++|||||.|.+.++|.+|+..+||..+.|+.|++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~---d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCR---DMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEec---ccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 368999999999999999999999999999999994 67789999999999999999999999999999999999999
Q ss_pred eecC
Q 003204 264 WGKS 267 (839)
Q Consensus 264 ~ak~ 267 (839)
|+..
T Consensus 91 ~~~~ 94 (213)
T 4f02_A 91 WSQR 94 (213)
T ss_dssp ECCC
T ss_pred cccc
Confidence 9654
No 152
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.46 E-value=1.3e-13 Score=139.24 Aligned_cols=83 Identities=17% Similarity=0.316 Sum_probs=77.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..++|||+|||+.+|+++|+++|++||.|..|+|+. +..+|+++|||||.|.+.++|.+|+..|||..|+|+.|+|.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~---~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~ 200 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLAR---DPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 200 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEe---cCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEE
Confidence 458999999999999999999999999999999994 55678899999999999999999999999999999999999
Q ss_pred eecCCC
Q 003204 264 WGKSVA 269 (839)
Q Consensus 264 ~ak~~~ 269 (839)
|+++.+
T Consensus 201 ~a~~~~ 206 (216)
T 2qfj_A 201 KAVTPP 206 (216)
T ss_dssp ECSSCS
T ss_pred EecCCC
Confidence 998764
No 153
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.46 E-value=8.9e-14 Score=134.50 Aligned_cols=79 Identities=27% Similarity=0.462 Sum_probs=73.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
....++|||||||+++|+++|+++|++||.|.+|+|+. + ++|||||.|.+.++|..|+..|||..++|++|+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~---~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVAR---N-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECS---S-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEee---C-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 44678999999999999999999999999999999984 2 589999999999999999999999999999999
Q ss_pred EEeecCC
Q 003204 262 IGWGKSV 268 (839)
Q Consensus 262 V~~ak~~ 268 (839)
|.|+++.
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9998864
No 154
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.1e-13 Score=126.32 Aligned_cols=78 Identities=14% Similarity=0.185 Sum_probs=71.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..++|||+|||+++|+++|+++|+.| .|.+|+|+. +. .|+++|||||.|.+.++|++|+ .|||..|+|+.|.|.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~---d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 88 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLK---DH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVS 88 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECC---CT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEE---CC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 46899999999999999999999999 899999995 44 3889999999999999999999 899999999999998
Q ss_pred eecC
Q 003204 264 WGKS 267 (839)
Q Consensus 264 ~ak~ 267 (839)
.+..
T Consensus 89 ~a~~ 92 (109)
T 2dnn_A 89 PATE 92 (109)
T ss_dssp ECCH
T ss_pred ECCc
Confidence 7653
No 155
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.45 E-value=2.4e-13 Score=131.12 Aligned_cols=81 Identities=22% Similarity=0.436 Sum_probs=75.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
.++|||+|||+++|+++|+++|+.||.|.+|+|+. +..+|+++|||||.|.+.++|.+|+..|||..+.|++|+|.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~---~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR---DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEe---CCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEe
Confidence 58999999999999999999999999999999994 556788999999999999999999999999999999999999
Q ss_pred ecCC
Q 003204 265 GKSV 268 (839)
Q Consensus 265 ak~~ 268 (839)
+++.
T Consensus 79 ~~~~ 82 (167)
T 1fxl_A 79 ARPS 82 (167)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7643
No 156
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.45 E-value=2.7e-13 Score=120.42 Aligned_cols=75 Identities=19% Similarity=0.293 Sum_probs=62.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCE--ECCeE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV--VYEYE 259 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~--i~Gr~ 259 (839)
.+..++|||||||+++|+++|+++|++||.|.+|+|++ .++|||||.|.+.++|++ |+|.. +.|+.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~--------~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~ 75 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK--------PFRAFAFVTFADDKVAQS----LCGEDLIIKGIS 75 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS--------SCCSEEEEEESCHHHHHH----HTTCEEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee--------CCCCEEEEEECCHHHHHH----HcCCCcccCCEE
Confidence 44578999999999999999999999999999999984 278999999999999873 56665 45999
Q ss_pred EEEEeecCC
Q 003204 260 LKIGWGKSV 268 (839)
Q Consensus 260 IkV~~ak~~ 268 (839)
|.|.|+++.
T Consensus 76 v~v~~a~~k 84 (89)
T 3d2w_A 76 VHISNAEPK 84 (89)
T ss_dssp EEEEECC--
T ss_pred EEEEEcCCC
Confidence 999998754
No 157
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.44 E-value=1.2e-13 Score=138.29 Aligned_cols=83 Identities=23% Similarity=0.284 Sum_probs=77.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
...++|||+|||+.+++++|+++|++||.|.+|+|+. +. +|.++|||||.|.+.++|.+|+..|||..++|+.|+|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~---d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V 161 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDY---DR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 161 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECC---CT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4578999999999999999999999999999999995 44 7889999999999999999999999999999999999
Q ss_pred EeecCCC
Q 003204 263 GWGKSVA 269 (839)
Q Consensus 263 ~~ak~~~ 269 (839)
.|+....
T Consensus 162 ~~a~~~~ 168 (177)
T 2f3j_A 162 QLVASQI 168 (177)
T ss_dssp EEESSGG
T ss_pred EEecCCC
Confidence 9988654
No 158
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.44 E-value=2.3e-13 Score=131.72 Aligned_cols=81 Identities=27% Similarity=0.433 Sum_probs=75.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEe
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 264 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ 264 (839)
.++|||+|||+++|+++|+++|++||.|.+|+|+. +..+|+++|||||.|.+.++|.+|+..|+|..++|++|+|.|
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 79 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMR---DYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSY 79 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCE---ETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEE---eCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEe
Confidence 58999999999999999999999999999999984 556788999999999999999999999999999999999999
Q ss_pred ecCC
Q 003204 265 GKSV 268 (839)
Q Consensus 265 ak~~ 268 (839)
+++.
T Consensus 80 ~~~~ 83 (168)
T 1b7f_A 80 ARPG 83 (168)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7743
No 159
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.1e-13 Score=121.63 Aligned_cols=78 Identities=17% Similarity=0.323 Sum_probs=69.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEE-EeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVK-IMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVk-I~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
..++|||+|||+.+|+++|+.+|++||.|.+|+ |+. +..+ +.|||.|.+.++|.+|+..|||..++|+.|+|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~---~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNT---DSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECC---SSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeec---CCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 468999999999999999999999999999995 773 3233 33999999999999999999999999999999
Q ss_pred EeecCC
Q 003204 263 GWGKSV 268 (839)
Q Consensus 263 ~~ak~~ 268 (839)
.|+++.
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 998865
No 160
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.44 E-value=3.6e-13 Score=128.58 Aligned_cols=77 Identities=21% Similarity=0.385 Sum_probs=70.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccE-EEEEeCCHHHHHHHHHHhCCCEECC--eEEE
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNC-GFVAFMNRADGQAAKDEMQGVVVYE--YELK 261 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~-gFV~F~~~~dAe~Al~~lnG~~i~G--r~Ik 261 (839)
-..|||+||++.+|+++|.++|++||.|.+|+|+. +.+|| |||+|.+.++|..|+..|||..|.| +.|+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~--------~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT--------KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE--------ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc--------CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 46799999999999999999999999999999872 23577 9999999999999999999999998 9999
Q ss_pred EEeecCCC
Q 003204 262 IGWGKSVA 269 (839)
Q Consensus 262 V~~ak~~~ 269 (839)
|.|+++..
T Consensus 100 I~~ak~~~ 107 (130)
T 3zzy_A 100 IDFSKLTS 107 (130)
T ss_dssp EEECSCSS
T ss_pred EEecCCCc
Confidence 99999764
No 161
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.43 E-value=3.9e-13 Score=137.45 Aligned_cols=79 Identities=15% Similarity=0.255 Sum_probs=73.0
Q ss_pred CccEEEEcCCC-CCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 184 QTTNLYVGNLS-PQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 184 ~~ttLfVgNLp-~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
.+++|||+||| +.+|+++|+++|++||.|.+|+|+. ..+|||||.|.+.++|++|+..|||..+.|++|+|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~--------~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v 74 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMK--------SKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNV 74 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECT--------TSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEec--------CCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEE
Confidence 46899999999 7999999999999999999999984 14799999999999999999999999999999999
Q ss_pred EeecCCCC
Q 003204 263 GWGKSVAL 270 (839)
Q Consensus 263 ~~ak~~~~ 270 (839)
.|++...+
T Consensus 75 ~~s~~~~~ 82 (205)
T 3tyt_A 75 CVSKQPAI 82 (205)
T ss_dssp EECSCSCC
T ss_pred EEccCCcc
Confidence 99987653
No 162
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.42 E-value=2.9e-13 Score=134.03 Aligned_cols=80 Identities=21% Similarity=0.370 Sum_probs=71.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECC--eEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE--YELK 261 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~G--r~Ik 261 (839)
...+|||+||++.+|+++|+++|++||.|.+|+|+. .+.++||||+|.+.++|+.|+..|||..|.| +.|+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~-------k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-------KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE-------SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe-------CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 356799999999999999999999999999999972 2357899999999999999999999999966 9999
Q ss_pred EEeecCCCC
Q 003204 262 IGWGKSVAL 270 (839)
Q Consensus 262 V~~ak~~~~ 270 (839)
|.|+++..+
T Consensus 118 V~~Ak~~~l 126 (164)
T 1sjr_A 118 IDFSKLTSL 126 (164)
T ss_dssp EEECSSSSC
T ss_pred EEEecCCcc
Confidence 999997643
No 163
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.42 E-value=6.3e-13 Score=150.85 Aligned_cols=84 Identities=17% Similarity=0.358 Sum_probs=78.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..++|||+|||+.||+++|..+|++||.|..|+|+. +..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~---d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVY---SKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeec---cCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 468999999999999999999999999999999994 66788999999999999999999999999999999999999
Q ss_pred eecCCCC
Q 003204 264 WGKSVAL 270 (839)
Q Consensus 264 ~ak~~~~ 270 (839)
|+++...
T Consensus 178 ~a~~~~~ 184 (437)
T 3pgw_S 178 VERGRTV 184 (437)
T ss_pred EeCCCCC
Confidence 9987643
No 164
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=9.1e-13 Score=124.88 Aligned_cols=76 Identities=22% Similarity=0.312 Sum_probs=68.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccE-EEEEeCCHHHHHHHHHHhCCCEECC--eEEEE
Q 003204 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNC-GFVAFMNRADGQAAKDEMQGVVVYE--YELKI 262 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~-gFV~F~~~~dAe~Al~~lnG~~i~G--r~IkV 262 (839)
..|||+||++.+|+++|.++|++||.|.+|+|+. + .|| |||+|.+.++|..|+..|||..|.| +.|+|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~--------~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK--------R-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE--------S-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe--------C-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 4578999999999999999999999999999972 1 275 9999999999999999999999988 69999
Q ss_pred EeecCCCC
Q 003204 263 GWGKSVAL 270 (839)
Q Consensus 263 ~~ak~~~~ 270 (839)
.||++..+
T Consensus 97 ~~Ak~~~l 104 (124)
T 2e5i_A 97 EYARPTRL 104 (124)
T ss_dssp ECCSCSCC
T ss_pred EEecCCcc
Confidence 99997653
No 165
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.41 E-value=5.9e-13 Score=129.60 Aligned_cols=79 Identities=13% Similarity=0.331 Sum_probs=74.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..++|||+|||+.+|+++|+++|++||.|.+|+|+. +..+|+++|||||.|.+.++|.+|+..|||..++|++|+|.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 169 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVK---DSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 169 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEE---CTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEe---cCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 368999999999999999999999999999999984 55688899999999999999999999999999999999999
Q ss_pred ee
Q 003204 264 WG 265 (839)
Q Consensus 264 ~a 265 (839)
||
T Consensus 170 ~A 171 (172)
T 2g4b_A 170 RA 171 (172)
T ss_dssp EC
T ss_pred eC
Confidence 96
No 166
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.40 E-value=6.1e-13 Score=132.22 Aligned_cols=83 Identities=22% Similarity=0.332 Sum_probs=75.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
....++|||+|||+++|+++|+++|+.||.|.+|+|+. +..+|+++|||||.|.+.++|.+|+.. +|..+.|+.|.
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~ 85 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMR---DPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVE 85 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEE---cCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEee
Confidence 34578999999999999999999999999999999994 667788999999999999999999955 99999999999
Q ss_pred EEeecCC
Q 003204 262 IGWGKSV 268 (839)
Q Consensus 262 V~~ak~~ 268 (839)
|.|+.+.
T Consensus 86 v~~~~~~ 92 (196)
T 1l3k_A 86 PKRAVSR 92 (196)
T ss_dssp EEECCC-
T ss_pred eecccCc
Confidence 9997654
No 167
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.39 E-value=3.6e-13 Score=127.85 Aligned_cols=78 Identities=12% Similarity=0.248 Sum_probs=70.6
Q ss_pred cEEEEcCC----CCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCC----HHH----HHHHHH--HhC
Q 003204 186 TNLYVGNL----SPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN----RAD----GQAAKD--EMQ 251 (839)
Q Consensus 186 ttLfVgNL----p~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~----~~d----Ae~Al~--~ln 251 (839)
++|||||| |+.|++.+|+.+|+.||.|.+|+++ +|+.||+++|||||.|.+ ..+ |.+|+. .+|
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li---~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln 79 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAF---NDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS 79 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEE---ECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEE---ecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc
Confidence 78999999 9999999999999999999999999 599999999999999995 322 888988 789
Q ss_pred CCEECCeEEEEEeec
Q 003204 252 GVVVYEYELKIGWGK 266 (839)
Q Consensus 252 G~~i~Gr~IkV~~ak 266 (839)
|..|+|++|+|.+-+
T Consensus 80 g~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 80 GCFIMGFKFEVILNK 94 (136)
T ss_dssp CEEETTEEEEEEECC
T ss_pred CCeecCcEEEEEECc
Confidence 999999999999844
No 168
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.39 E-value=6.8e-13 Score=135.48 Aligned_cols=80 Identities=28% Similarity=0.503 Sum_probs=73.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..++|||+|||+.+|+++|+++|++||.|.+|+|++ + .+.++|||||.|.+.++|.+|+..|||..|+|++|+|.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~---d--~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~ 176 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---D--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 176 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---E--TTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeec---c--CCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 357899999999999999999999999999999994 3 23478999999999999999999999999999999999
Q ss_pred eecCC
Q 003204 264 WGKSV 268 (839)
Q Consensus 264 ~ak~~ 268 (839)
|+++.
T Consensus 177 ~a~~~ 181 (213)
T 4f02_A 177 RFKSR 181 (213)
T ss_dssp ECCCH
T ss_pred EcCCC
Confidence 98753
No 169
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.39 E-value=6.2e-13 Score=116.08 Aligned_cols=71 Identities=27% Similarity=0.475 Sum_probs=66.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccC----C-------CeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCC
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRF----G-------PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG 252 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~f----G-------~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG 252 (839)
..++|||+|||+++|+++|+++|++| | .|.+|+++. .+|||||.|.+.++|.+|+ .|||
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~---------~kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---------DKNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS---------SSSEEEEEESSHHHHHHHG-GGTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC---------CCcEEEEEcCCHHHHHHHH-hcCC
Confidence 46899999999999999999999999 8 999999983 4799999999999999999 9999
Q ss_pred CEECCeEEEEEe
Q 003204 253 VVVYEYELKIGW 264 (839)
Q Consensus 253 ~~i~Gr~IkV~~ 264 (839)
..++|+.|+|..
T Consensus 75 ~~~~g~~l~V~r 86 (87)
T 2hzc_A 75 IIFQGQSLKIRR 86 (87)
T ss_dssp CEETTEECEEEC
T ss_pred CEECCeEEEEeC
Confidence 999999999974
No 170
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.39 E-value=6.1e-13 Score=125.05 Aligned_cols=76 Identities=25% Similarity=0.435 Sum_probs=70.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
...++|||||| ++|+++|+++|++||.|.+|+|+ +++|||||.|.+.++|.+|+..|||..++|+.|+|
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45789999996 69999999999999999999997 47899999999999999999999999999999999
Q ss_pred EeecCCC
Q 003204 263 GWGKSVA 269 (839)
Q Consensus 263 ~~ak~~~ 269 (839)
.|+++.+
T Consensus 106 ~~a~~~~ 112 (121)
T 2bz2_A 106 NIARKQP 112 (121)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 9998764
No 171
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.38 E-value=1.1e-12 Score=130.71 Aligned_cols=83 Identities=12% Similarity=0.300 Sum_probs=77.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
...++|||+|||+.+++++|+++|++||.|.+|+|++ +..+|+++|||||.|.+.++|.+|+..|||..++|+.|+|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 188 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVK---DSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 188 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEE---CTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEee---cCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4568999999999999999999999999999999984 5567889999999999999999999999999999999999
Q ss_pred EeecCC
Q 003204 263 GWGKSV 268 (839)
Q Consensus 263 ~~ak~~ 268 (839)
.|+++.
T Consensus 189 ~~a~~~ 194 (198)
T 2yh0_A 189 QRASVG 194 (198)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 998865
No 172
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.38 E-value=7.4e-12 Score=132.35 Aligned_cols=81 Identities=23% Similarity=0.447 Sum_probs=74.8
Q ss_pred CCccEEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCe
Q 003204 183 PQTTNLYVGNLSPQVDENFLL----RTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 258 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~----~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr 258 (839)
+..++|||+|||+++|+++|+ ++|++||.|.+|+|+. +|+++|||||.|.+.++|.+|+..|||..+.|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR------SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC------CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 457899999999999999976 8999999999999983 678899999999999999999999999999999
Q ss_pred EEEEEeecCCC
Q 003204 259 ELKIGWGKSVA 269 (839)
Q Consensus 259 ~IkV~~ak~~~ 269 (839)
.|+|.|++...
T Consensus 81 ~l~v~~a~~~~ 91 (282)
T 3pgw_A 81 PMRIQYAKTDS 91 (282)
T ss_pred EEEEEEeccCc
Confidence 99999997654
No 173
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=8.8e-13 Score=122.02 Aligned_cols=80 Identities=21% Similarity=0.290 Sum_probs=67.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..++|||||||+++|+++|+++|++||.|. +.++..+....+|+++|||||+|.+.++|++|+..|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 468999999999999999999999999999 8777432222237999999999999999999999995 4889988887
Q ss_pred eec
Q 003204 264 WGK 266 (839)
Q Consensus 264 ~ak 266 (839)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 644
No 174
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.38 E-value=4.3e-13 Score=140.59 Aligned_cols=79 Identities=27% Similarity=0.516 Sum_probs=71.6
Q ss_pred CCCccEEEEcCCCCCC---------CHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCC
Q 003204 182 DPQTTNLYVGNLSPQV---------DENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG 252 (839)
Q Consensus 182 dp~~ttLfVgNLp~~v---------tEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG 252 (839)
+...++||||||++.+ ++++|+.+|++||.|.+|+|+ .++|||||.|.++++|+.|+.+|+|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~---------~~kG~AFV~F~~~~~Ae~A~~am~g 201 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV---------ESKNCGFVKFKYQANAEFAKEAMSN 201 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE---------GGGTEEEEEESSHHHHHHHHHHHTT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE---------CCCCEEEEEeCCHHHHHHHHHHhCC
Confidence 4467999999999998 799999999999999999999 2589999999999999999999999
Q ss_pred CEE------------CCeEEEEEeecCCC
Q 003204 253 VVV------------YEYELKIGWGKSVA 269 (839)
Q Consensus 253 ~~i------------~Gr~IkV~~ak~~~ 269 (839)
..| .|+.|.|.||+..+
T Consensus 202 ~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 202 QTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred CEEeccccccccccCCCCEEEEEEccCCC
Confidence 999 89999999998764
No 175
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.38 E-value=4.2e-13 Score=130.00 Aligned_cols=81 Identities=17% Similarity=0.361 Sum_probs=75.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..++|||+|||+.+|+++|+++|++||.|.+|+|+. +..+|+++|||||.|.+.++|.+|+. ++|..++|++|+|.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~ 161 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLML---DKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIK 161 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCC---SSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEE---cCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEe
Confidence 357999999999999999999999999999999984 55688999999999999999999996 99999999999999
Q ss_pred eecCC
Q 003204 264 WGKSV 268 (839)
Q Consensus 264 ~ak~~ 268 (839)
|+++.
T Consensus 162 ~a~pk 166 (167)
T 2cjk_A 162 RAEPR 166 (167)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98764
No 176
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=8.6e-13 Score=118.78 Aligned_cols=74 Identities=22% Similarity=0.288 Sum_probs=65.8
Q ss_pred CCccEEEEcCCCCCCCHHH----HHHHhccC-CCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECC
Q 003204 183 PQTTNLYVGNLSPQVDENF----LLRTFGRF-GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 257 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~----L~~lF~~f-G~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~G 257 (839)
|..|.|||+|||..+++++ |.++|++| |.|.+| . | |+|||.|.+.++|.+|++.|||..+.|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--t--------g---G~AfV~F~~~esA~~A~~~l~G~~l~g 73 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--T--------G---CSAILRFINQDSAERAQKRMENEDVFG 73 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--C--------T---TCEEEEESSHHHHHHHHHHHTTCCSSS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--e--------c---CEEEEEECCHHHHHHHHHHhcCCccCC
Confidence 3456699999999999988 55899999 599987 2 2 999999999999999999999999999
Q ss_pred eEEEEEeecCCC
Q 003204 258 YELKIGWGKSVA 269 (839)
Q Consensus 258 r~IkV~~ak~~~ 269 (839)
++|+|.||+..+
T Consensus 74 r~i~v~~A~~~s 85 (96)
T 2diu_A 74 NRIIVSFTPKNR 85 (96)
T ss_dssp SCCEEESSCCSC
T ss_pred ceEEEEecCCCc
Confidence 999999998764
No 177
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1e-12 Score=115.57 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=64.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCC--EECCeEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV--VVYEYELK 261 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~--~i~Gr~Ik 261 (839)
..++|||+|||+++|+++|+++|++||.|.+|+|+. .++|||||.|.+.++|++| ++. .+.|++|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~--------~~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~ 71 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK--------PFRAFAFVTFADDQIAQSL----CGEDLIIKGISVH 71 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCS--------SCCSCCEEECSCHHHHHHT----TTCEEEETTEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEec--------CCCCEEEEEECCHHHHHHH----hcCCceeCCEEEE
Confidence 468999999999999999999999999999999983 2689999999999999754 444 45999999
Q ss_pred EEeecCCC
Q 003204 262 IGWGKSVA 269 (839)
Q Consensus 262 V~~ak~~~ 269 (839)
|.|+++..
T Consensus 72 v~~a~~~~ 79 (88)
T 1wf0_A 72 ISNAEPKH 79 (88)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99988653
No 178
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.6e-12 Score=125.17 Aligned_cols=79 Identities=32% Similarity=0.529 Sum_probs=72.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEee
Q 003204 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~a 265 (839)
.+|||+|||+++|+++|+++|++||.|.+|+|+. +. +|+++|||||.|.+.++|.+|+..|||..+.|+.|+|.|+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~---~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMI---DK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEEC---CC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEE---CC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEc
Confidence 4899999999999999999999999999999995 22 4678999999999999999999999999999999999997
Q ss_pred cCC
Q 003204 266 KSV 268 (839)
Q Consensus 266 k~~ 268 (839)
.+.
T Consensus 77 ~~~ 79 (166)
T 3md3_A 77 FQS 79 (166)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 179
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.35 E-value=8.9e-13 Score=125.25 Aligned_cols=79 Identities=10% Similarity=0.097 Sum_probs=69.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCee--EEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIA--SVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~--sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~I 260 (839)
...++|||+|||+++|+++|+++|+.| .|. +|+|++ +.. |+++|||||.|.+.++|++|+. +++..|+|+.|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~---d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I 113 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPV---DPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYI 113 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCC---CSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEE---CCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEE
Confidence 356889999999999999999999999 566 899984 444 8999999999999999999996 58899999999
Q ss_pred EEEeecC
Q 003204 261 KIGWGKS 267 (839)
Q Consensus 261 kV~~ak~ 267 (839)
+|.++..
T Consensus 114 ~V~~a~~ 120 (126)
T 2hgm_A 114 EVFKSSQ 120 (126)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9988653
No 180
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.35 E-value=2.7e-13 Score=130.88 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=71.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
...++|||+|||+++|+++|+++|++|| |.+|+|+. +.. |+++|||||+|.+.++|++|+ .+|+..|+|+.|+|
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~---d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEI---GPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCC---SSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEE---CCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 3467999999999999999999999999 67999985 443 899999999999999999999 89999999999999
Q ss_pred EeecCC
Q 003204 263 GWGKSV 268 (839)
Q Consensus 263 ~~ak~~ 268 (839)
.++...
T Consensus 118 ~~a~~~ 123 (139)
T 2hgn_A 118 FLNSTT 123 (139)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 987654
No 181
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.35 E-value=1.9e-12 Score=128.71 Aligned_cols=83 Identities=18% Similarity=0.288 Sum_probs=73.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
...++|||+|||+.+|+++|+++|+.||.|..|+|+. +..+|+++|||||.|.+.++|.+|+.. +|..++|+.|.|
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v 177 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMT---DRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEV 177 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEee---cCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEE
Confidence 3468999999999999999999999999999999994 556788999999999999999999965 899999999999
Q ss_pred EeecCCC
Q 003204 263 GWGKSVA 269 (839)
Q Consensus 263 ~~ak~~~ 269 (839)
.|+.+..
T Consensus 178 ~~a~~k~ 184 (196)
T 1l3k_A 178 RKALSKQ 184 (196)
T ss_dssp EECC---
T ss_pred EecCChh
Confidence 9987653
No 182
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.35 E-value=2.1e-12 Score=125.05 Aligned_cols=80 Identities=28% Similarity=0.468 Sum_probs=74.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECC--eEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE--YEL 260 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~G--r~I 260 (839)
...++|||+|||+.+++++|+++|++||.|..|+|++ +..+|+++|||||.|.+.++|.+|+..|||..+.| ++|
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l 163 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILR---DKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPL 163 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCC
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEE---cCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEE
Confidence 3468999999999999999999999999999999984 55578889999999999999999999999999988 999
Q ss_pred EEEee
Q 003204 261 KIGWG 265 (839)
Q Consensus 261 kV~~a 265 (839)
+|.||
T Consensus 164 ~V~~A 168 (168)
T 1b7f_A 164 SVRLA 168 (168)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99986
No 183
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.34 E-value=1.4e-12 Score=121.17 Aligned_cols=74 Identities=15% Similarity=0.219 Sum_probs=66.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeE----
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE---- 259 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~---- 259 (839)
..++|||+|||+++|+++|+++|++||.|..|+|+. + |||||+|.+.++|++|+..|||..|+|+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR---D-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT---T-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEec---C-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 468999999999999999999999999999999983 1 89999999999999999999999999998
Q ss_pred -EEEEeecC
Q 003204 260 -LKIGWGKS 267 (839)
Q Consensus 260 -IkV~~ak~ 267 (839)
|+|..+.+
T Consensus 85 ~i~v~~~~~ 93 (115)
T 3beg_B 85 YIRVKVDGP 93 (115)
T ss_dssp BCEEEECC-
T ss_pred EEEeccCCC
Confidence 67766554
No 184
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=8.1e-13 Score=124.96 Aligned_cols=79 Identities=14% Similarity=0.131 Sum_probs=71.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCe----eEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPI----ASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I----~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~ 259 (839)
..++|||+|||+++|+++|+++|++||.| ..|.|+. + .+|+++|||||.|.+.++|++|+.. |+..|+|+.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~---d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~ 96 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVT---Y-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRY 96 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEE---C-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEE---C-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeE
Confidence 46899999999999999999999999986 6899984 4 4789999999999999999999965 999999999
Q ss_pred EEEEeecC
Q 003204 260 LKIGWGKS 267 (839)
Q Consensus 260 IkV~~ak~ 267 (839)
|.|..+.+
T Consensus 97 i~V~~a~~ 104 (123)
T 2dha_A 97 IELFRSTA 104 (123)
T ss_dssp ECCEEECH
T ss_pred EEEEECCH
Confidence 99988653
No 185
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.34 E-value=1.5e-12 Score=131.43 Aligned_cols=81 Identities=23% Similarity=0.505 Sum_probs=72.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..++|||+|||+++|+++|+++|+.||.|.+|+|++ +..+|+++|||||.|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 103 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSW---DSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVG 103 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECC---C-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEE
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEee---cCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEe
Confidence 468999999999999999999999999999999984 66678899999999999999999999999999999999998
Q ss_pred eecC
Q 003204 264 WGKS 267 (839)
Q Consensus 264 ~ak~ 267 (839)
|+..
T Consensus 104 ~~~~ 107 (216)
T 2qfj_A 104 RPSN 107 (216)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 8654
No 186
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.33 E-value=2.4e-12 Score=124.70 Aligned_cols=79 Identities=19% Similarity=0.373 Sum_probs=72.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
.+++|||+|||+++|+++|+++|+.||.|.+|+|++ +..+|+++|||||.|.+.++|..|+.. +..++|+.|.|.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~ 76 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMK---DPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPK 76 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCC---CTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEE---CCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccc
Confidence 368999999999999999999999999999999994 667889999999999999999999974 679999999999
Q ss_pred eecC
Q 003204 264 WGKS 267 (839)
Q Consensus 264 ~ak~ 267 (839)
|+.+
T Consensus 77 ~~~~ 80 (167)
T 2cjk_A 77 RAIP 80 (167)
T ss_dssp ECCC
T ss_pred cccc
Confidence 8653
No 187
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.32 E-value=2.6e-12 Score=123.76 Aligned_cols=79 Identities=22% Similarity=0.427 Sum_probs=72.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeE--EE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE--LK 261 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~--Ik 261 (839)
..++|||+|||+.+++++|+++|++||.|..|+|+. +..+|+++|||||.|.+.++|.+|+..|||..++|+. |+
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~ 163 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV---DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 163 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEe---cCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceE
Confidence 468999999999999999999999999999999984 5567889999999999999999999999999999964 88
Q ss_pred EEee
Q 003204 262 IGWG 265 (839)
Q Consensus 262 V~~a 265 (839)
|.||
T Consensus 164 v~~A 167 (167)
T 1fxl_A 164 VKFA 167 (167)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9886
No 188
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.31 E-value=5.6e-12 Score=123.36 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=71.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
...++|||+|||+.+|+++|+++|++||.|..+ ..+|+++|||||.|.+.++|.+|+..|||..++|+.|+|
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--------~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 168 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--------SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 168 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--------CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEE
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--------cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 357899999999999999999999999988766 236788999999999999999999999999999999999
Q ss_pred EeecCC
Q 003204 263 GWGKSV 268 (839)
Q Consensus 263 ~~ak~~ 268 (839)
.|+++.
T Consensus 169 ~~a~~k 174 (175)
T 1fje_B 169 YYTGEK 174 (175)
T ss_dssp EECSSC
T ss_pred EecCCC
Confidence 998864
No 189
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.31 E-value=2.9e-12 Score=124.63 Aligned_cols=79 Identities=25% Similarity=0.438 Sum_probs=72.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEEC---CeE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY---EYE 259 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~---Gr~ 259 (839)
...++|||+|||+.+|+++|+++|++||.|.+|+|+. + .+|+++|||||.|.+.++|.+|+..|||..+. |++
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~---~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~ 168 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILR---G-PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 168 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---C-TTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSC
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEE---C-CCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCC
Confidence 3578999999999999999999999999999999984 3 35788999999999999999999999998876 499
Q ss_pred EEEEee
Q 003204 260 LKIGWG 265 (839)
Q Consensus 260 IkV~~a 265 (839)
|+|.||
T Consensus 169 l~V~~a 174 (175)
T 3nmr_A 169 MVVKFA 174 (175)
T ss_dssp CEEEEC
T ss_pred eEEEec
Confidence 999997
No 190
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.30 E-value=3.3e-12 Score=124.25 Aligned_cols=81 Identities=17% Similarity=0.434 Sum_probs=71.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccC--CcccEEEEEeCCHHHHHHHHHHhCCCEEC---Ce
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERR--RQRNCGFVAFMNRADGQAAKDEMQGVVVY---EY 258 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg--~~rg~gFV~F~~~~dAe~Al~~lnG~~i~---Gr 258 (839)
..++|||+|||+++|+++|+++|++||.|.+|+|++ +..+| +++|||||.|.+.++|.+|+..|+|..+. ++
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 78 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLR---DRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHH 78 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE---ECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEe---cCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCcc
Confidence 468999999999999999999999999999999994 54554 78999999999999999999999998876 67
Q ss_pred EEEEEeecC
Q 003204 259 ELKIGWGKS 267 (839)
Q Consensus 259 ~IkV~~ak~ 267 (839)
.+.+.++..
T Consensus 79 ~~~~~~~~~ 87 (175)
T 3nmr_A 79 PIQMKPADS 87 (175)
T ss_dssp CCEEEECGG
T ss_pred ceEEccccc
Confidence 788877654
No 191
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.28 E-value=7.9e-12 Score=126.72 Aligned_cols=79 Identities=11% Similarity=0.164 Sum_probs=70.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..++|||+|||+++|+++|+++|++||.|.+|+|+++ .+|+++|||||+|.+.++|.+|+..+ +..++|++|+|.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~----~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~ 182 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT----LHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLIL 182 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEEC----TTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEEC----CCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEE
Confidence 3589999999999999999999999999999999852 24788999999999999999999655 569999999999
Q ss_pred eecC
Q 003204 264 WGKS 267 (839)
Q Consensus 264 ~ak~ 267 (839)
|++.
T Consensus 183 ~~~~ 186 (193)
T 2voo_A 183 FKDD 186 (193)
T ss_dssp ETTT
T ss_pred EhHH
Confidence 9764
No 192
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.27 E-value=1.5e-11 Score=113.07 Aligned_cols=82 Identities=12% Similarity=0.036 Sum_probs=70.3
Q ss_pred CccEEEEcCCCC-----CCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCe
Q 003204 184 QTTNLYVGNLSP-----QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 258 (839)
Q Consensus 184 ~~ttLfVgNLp~-----~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr 258 (839)
.+++|+|.||.. +-++++|+++|++||.|.+|.|+.++ ..+++++|||||.|.+.++|.+|+..|||..++|+
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~--~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIP--GAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECS--SCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCC--CCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 467999999963 24789999999999999999998522 12367899999999999999999999999999999
Q ss_pred EEEEEeecC
Q 003204 259 ELKIGWGKS 267 (839)
Q Consensus 259 ~IkV~~ak~ 267 (839)
.|+|.|+..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999753
No 193
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.27 E-value=1.2e-11 Score=130.69 Aligned_cols=78 Identities=27% Similarity=0.474 Sum_probs=71.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEEC-CeE
Q 003204 181 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY-EYE 259 (839)
Q Consensus 181 ~dp~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~-Gr~ 259 (839)
..+.+++|||+|||+.+|+++|+++|++||.|.+|+|+. + .+|||||.|.+.++|.+|+..|||..+. |+.
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~---~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 274 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP---G-----RHDIAFVEFDNEVQAGAARDALQGFKITQNNA 274 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec---C-----CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCE
Confidence 345678999999999999999999999999999999983 1 1589999999999999999999999999 999
Q ss_pred EEEEeec
Q 003204 260 LKIGWGK 266 (839)
Q Consensus 260 IkV~~ak 266 (839)
|+|.|+|
T Consensus 275 l~v~~ak 281 (282)
T 3pgw_A 275 MKISFAK 281 (282)
T ss_pred EEEEEec
Confidence 9999987
No 194
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.27 E-value=7.9e-12 Score=132.79 Aligned_cols=83 Identities=23% Similarity=0.424 Sum_probs=74.6
Q ss_pred CCCccEEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeCCCCccc-cCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeE
Q 003204 182 DPQTTNLYVGNLSPQ-VDENFLLRTFGRFGPIASVKIMWPRTEEE-RRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (839)
Q Consensus 182 dp~~ttLfVgNLp~~-vtEe~L~~lF~~fG~I~sVkI~~pr~d~~-tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~ 259 (839)
....++|||+|||+. +|+++|+++|+.||.|.+|+|+. +.. +|+++|||||.|.+.++|.+|+ .|||..++|+.
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~---~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~ 282 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPA---GQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNRE 282 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCS---CCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEe---cCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcE
Confidence 345789999999999 99999999999999999999984 333 5889999999999999999999 99999999999
Q ss_pred EEEEeecCC
Q 003204 260 LKIGWGKSV 268 (839)
Q Consensus 260 IkV~~ak~~ 268 (839)
|+|.|+++.
T Consensus 283 i~V~~a~~k 291 (292)
T 2ghp_A 283 ISVSLADKK 291 (292)
T ss_dssp EEEEECCCC
T ss_pred EEEEEecCC
Confidence 999998864
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.25 E-value=1.7e-11 Score=129.15 Aligned_cols=76 Identities=32% Similarity=0.540 Sum_probs=71.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
...++|||||||+++|+++|+.+|+.||.|.+|+|+ +.+|||||.|.+.++|.+|+..|||..+.|+.|+|
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~---------~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN---------RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE---------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe---------CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 456899999999999999999999999999999998 35799999999999999999999999999999999
Q ss_pred EeecC
Q 003204 263 GWGKS 267 (839)
Q Consensus 263 ~~ak~ 267 (839)
.|+.+
T Consensus 91 ~~a~~ 95 (261)
T 3sde_A 91 RFATH 95 (261)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99763
No 196
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.25 E-value=2e-11 Score=129.10 Aligned_cols=82 Identities=20% Similarity=0.400 Sum_probs=76.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
..++|||+|||+.+|+++|+++|+.||.|.+|+|+. +..+|+++|||||.|.+.++|.+|+..|+|..++|+.|+|.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 170 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVY---SERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVH 170 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEe---eCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 357999999999999999999999999999999984 56688999999999999999999999999999999999999
Q ss_pred eecCC
Q 003204 264 WGKSV 268 (839)
Q Consensus 264 ~ak~~ 268 (839)
|+.+.
T Consensus 171 ~a~~~ 175 (284)
T 3smz_A 171 WTDAG 175 (284)
T ss_dssp ECCGG
T ss_pred ECCCC
Confidence 98754
No 197
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.24 E-value=1.7e-11 Score=129.70 Aligned_cols=82 Identities=12% Similarity=0.207 Sum_probs=75.5
Q ss_pred CCccEEEEcCCCCCC-CHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Q 003204 183 PQTTNLYVGNLSPQV-DENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 261 (839)
Q Consensus 183 p~~ttLfVgNLp~~v-tEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~Ik 261 (839)
...++|||+|||+.+ |+++|+++|+.||.|.+|+|+. + .+|+++|||||.|.+.++|.+|+..|||..++|++|+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~---~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 257 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLAC---G-QDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLR 257 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEE---C-SSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEE---C-CCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Confidence 457899999999995 9999999999999999999984 2 3688999999999999999999999999999999999
Q ss_pred EEeecCC
Q 003204 262 IGWGKSV 268 (839)
Q Consensus 262 V~~ak~~ 268 (839)
|.|+++.
T Consensus 258 v~~a~~~ 264 (284)
T 3smz_A 258 VSFCAPG 264 (284)
T ss_dssp EEECCSS
T ss_pred EEEecCC
Confidence 9998765
No 198
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.23 E-value=2.9e-12 Score=125.41 Aligned_cols=81 Identities=23% Similarity=0.366 Sum_probs=72.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 262 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV 262 (839)
...++|||+|||+++|+++|+++|..||.|..+.|. +..+|+++|||||.|.+.++|.+|+ .|||..+.|+.|+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~----~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVV----DVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCC----EEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEE----ECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEE
Confidence 357899999999999999999999999998773333 5567889999999999999999999 69999999999999
Q ss_pred EeecCC
Q 003204 263 GWGKSV 268 (839)
Q Consensus 263 ~~ak~~ 268 (839)
.|+++.
T Consensus 86 ~~~~~~ 91 (175)
T 1fje_B 86 EKPKGR 91 (175)
T ss_dssp ECCCCS
T ss_pred ecCCCc
Confidence 997754
No 199
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.23 E-value=9.7e-12 Score=128.33 Aligned_cols=80 Identities=24% Similarity=0.412 Sum_probs=73.3
Q ss_pred CCCccEEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Q 003204 182 DPQTTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 260 (839)
Q Consensus 182 dp~~ttLfVgNLp~-~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~I 260 (839)
.+.+++|||+|||+ ++++++|+++|++||.|.+|+|+. + .+|||||.|.+.++|.+|+..|||..+.|+.|
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~---~-----~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 102 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILF---N-----KKENALVQMADGNQAQLAMSHLNGHKLHGKPI 102 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECC---T-----TSCCEEEEESCHHHHHHHHHHHTTCBCSSSBC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEE---C-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 34578999999999 999999999999999999999994 2 27899999999999999999999999999999
Q ss_pred EEEeecCCC
Q 003204 261 KIGWGKSVA 269 (839)
Q Consensus 261 kV~~ak~~~ 269 (839)
+|.|++...
T Consensus 103 ~v~~a~~~~ 111 (229)
T 2adc_A 103 RITLSKHQN 111 (229)
T ss_dssp EEECCSCCC
T ss_pred EEEEecCcc
Confidence 999998764
No 200
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.23 E-value=1.4e-11 Score=123.29 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=72.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEEC-CeE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY-EYE 259 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG-~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~-Gr~ 259 (839)
.+.+++|||+|||+.+|+++|+++|++|| .|.+|+|+. ..+|||||.|.+.++|.+|+..|||..++ |+.
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~--------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 188 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ--------KDRKMALIQMGSVEEAVQALIDLHNHDLGENHH 188 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESS--------TTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEe--------CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCe
Confidence 34578999999999999999999999999 999999983 23789999999999999999999999999 999
Q ss_pred EEEEeecCC
Q 003204 260 LKIGWGKSV 268 (839)
Q Consensus 260 IkV~~ak~~ 268 (839)
|+|.|+++.
T Consensus 189 l~v~~a~~~ 197 (198)
T 1qm9_A 189 LRVSFSKST 197 (198)
T ss_dssp CCEEEECCC
T ss_pred EEEEeeccc
Confidence 999999863
No 201
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.22 E-value=6.4e-11 Score=118.45 Aligned_cols=77 Identities=25% Similarity=0.431 Sum_probs=71.6
Q ss_pred ccEEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 185 TTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 185 ~ttLfVgNLp~-~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
+++|||+|||+ .+++++|+++|++||.|.+|+|++ + .+|||||.|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~---~-----~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 74 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILF---N-----KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 74 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECST---T-----CSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEe---C-----CCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEE
Confidence 58999999999 999999999999999999999984 2 27899999999999999999999999999999999
Q ss_pred eecCCC
Q 003204 264 WGKSVA 269 (839)
Q Consensus 264 ~ak~~~ 269 (839)
|++...
T Consensus 75 ~a~~~~ 80 (198)
T 1qm9_A 75 LSKHQN 80 (198)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998764
No 202
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.21 E-value=2.6e-11 Score=125.15 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=72.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEEC-CeE
Q 003204 182 DPQTTNLYVGNLSPQVDENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY-EYE 259 (839)
Q Consensus 182 dp~~ttLfVgNLp~~vtEe~L~~lF~~fG-~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~-Gr~ 259 (839)
.+.+++|||+|||+.+++++|+++|++|| .|..|+|+. ..+|||||.|.+.++|.+|+..|||..++ |+.
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~--------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~ 219 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ--------KDRKMALIQMGSVEEAVQALIDLHNHDLGENHH 219 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS--------SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE--------CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCe
Confidence 34578999999999999999999999999 999999973 24789999999999999999999999999 999
Q ss_pred EEEEeecCC
Q 003204 260 LKIGWGKSV 268 (839)
Q Consensus 260 IkV~~ak~~ 268 (839)
|+|.|+++.
T Consensus 220 l~v~~a~~~ 228 (229)
T 2adc_A 220 LRVSFSKST 228 (229)
T ss_dssp CEEEECSSC
T ss_pred EEEEEecCC
Confidence 999998863
No 203
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.21 E-value=3.3e-11 Score=117.20 Aligned_cols=75 Identities=25% Similarity=0.461 Sum_probs=67.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccC----C-------CeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCC
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRF----G-------PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG 252 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~f----G-------~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG 252 (839)
..++|||+|||+++|+++|+++|++| | .|.++++. +++|||||.|.+.++|.+|+ .|||
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---------~~~g~afV~f~~~~~A~~A~-~~~~ 72 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---------QDKNFAFLEFRSVDETTQAM-AFDG 72 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---------TTTTEEEEEESSHHHHHHHG-GGTT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---------CCCCEEEEEeCCHHHHHHHH-HhCC
Confidence 36899999999999999999999999 7 77888776 46899999999999999999 9999
Q ss_pred CEECCeEEEEEeecCC
Q 003204 253 VVVYEYELKIGWGKSV 268 (839)
Q Consensus 253 ~~i~Gr~IkV~~ak~~ 268 (839)
..+.|+.|+|.|++..
T Consensus 73 ~~~~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 73 IIFQGQSLKIRRPHDY 88 (172)
T ss_dssp CEETTEECEEECCSSC
T ss_pred cEecCceeeecCCccc
Confidence 9999999999986543
No 204
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=8.1e-11 Score=108.55 Aligned_cols=79 Identities=11% Similarity=0.164 Sum_probs=68.2
Q ss_pred CCccEEEEcCCCCCCC-----------HHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhC
Q 003204 183 PQTTNLYVGNLSPQVD-----------ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ 251 (839)
Q Consensus 183 p~~ttLfVgNLp~~vt-----------Ee~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~ln 251 (839)
..+++|+|.||....+ +++|+++|++||.|.+|.|. +. .++|||||.|.+.++|.+|+..||
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~----~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF----DR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE----TT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe----cC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3578999999954432 68999999999999999764 21 378999999999999999999999
Q ss_pred CCEECCeEEEEEeecCC
Q 003204 252 GVVVYEYELKIGWGKSV 268 (839)
Q Consensus 252 G~~i~Gr~IkV~~ak~~ 268 (839)
|..++|++|+|.|+.+.
T Consensus 86 g~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGT 102 (112)
T ss_dssp TCEETTEECEEEECCSC
T ss_pred CCEECCcEEEEEEeCCC
Confidence 99999999999998764
No 205
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.18 E-value=8.5e-11 Score=116.86 Aligned_cols=75 Identities=25% Similarity=0.456 Sum_probs=67.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccC----C-------CeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCC
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRF----G-------PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG 252 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~f----G-------~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG 252 (839)
..++|||+|||+++|+++|+++|+.| | .|.++++. +++|||||.|.+.++|.+|+ .|||
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---------~~~g~afV~F~~~~~A~~Al-~l~g 72 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---------QDKNFAFLEFRSVDETTQAM-AFDG 72 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---------TTTTEEEEEESCSHHHHHHG-GGTT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---------CCCCEEEEEeCCHHHHHHHH-HhcC
Confidence 36899999999999999999999999 5 56666664 56899999999999999999 9999
Q ss_pred CEECCeEEEEEeecCC
Q 003204 253 VVVYEYELKIGWGKSV 268 (839)
Q Consensus 253 ~~i~Gr~IkV~~ak~~ 268 (839)
..+.|+.|+|.|++..
T Consensus 73 ~~~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 73 IIFQGQSLKIRRPHDY 88 (198)
T ss_dssp EEETTEEEEEECCCCC
T ss_pred CEEcCceEEEeCCCCC
Confidence 9999999999998765
No 206
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.15 E-value=3.7e-11 Score=122.79 Aligned_cols=78 Identities=13% Similarity=0.146 Sum_probs=68.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCe--eEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCe--
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPI--ASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY-- 258 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I--~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr-- 258 (839)
+.+++|||+|||+.+|+++|+++|++||.| .+|+|+. +. +..+|||||+|.+.++|.+|+..|||..+.|.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~---~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~ 195 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFS---GK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNG 195 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECS---CC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSS
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEc---CC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCC
Confidence 346799999999999999999999999999 8999983 22 45569999999999999999999999999886
Q ss_pred --EEEEEee
Q 003204 259 --ELKIGWG 265 (839)
Q Consensus 259 --~IkV~~a 265 (839)
++.|.|+
T Consensus 196 ~~p~~vk~~ 204 (205)
T 3tyt_A 196 PYPYTLKLC 204 (205)
T ss_dssp SSCEECEEE
T ss_pred CcceEEEec
Confidence 5666665
No 207
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.14 E-value=1.2e-10 Score=106.91 Aligned_cols=82 Identities=17% Similarity=0.140 Sum_probs=68.3
Q ss_pred CccEEEEcCC--CCCCC--------HHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 003204 184 QTTNLYVGNL--SPQVD--------ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 253 (839)
Q Consensus 184 ~~ttLfVgNL--p~~vt--------Ee~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~ 253 (839)
.++.|.|.|+ |..+. +++|+++|++||.|.+|+|+.++. ..+++++|||||.|.+.++|.+|+..|||.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~-~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVD-GVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBT-TBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCC-CCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 4678999997 32332 368999999999999999986441 123467899999999999999999999999
Q ss_pred EECCeEEEEEeec
Q 003204 254 VVYEYELKIGWGK 266 (839)
Q Consensus 254 ~i~Gr~IkV~~ak 266 (839)
.++||.|+|.|..
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999864
No 208
>2dt7_B Splicing factor 3 subunit 1; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=99.14 E-value=5.5e-12 Score=111.48 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=50.3
Q ss_pred hhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCcccccccCCCCCcceeeEEEeee
Q 003204 330 RHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSF 385 (839)
Q Consensus 330 ~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~Np~F~FL~d~~s~~h~YYrwrl~s~ 385 (839)
.....+|++||.||+++|..||.+||+|+.+||+|+||. ..+++|.||+|+|.++
T Consensus 29 ~kdl~iIk~TA~FVArnG~~Fe~~l~~re~~NpqF~FL~-p~h~~~~yy~~~v~~Y 83 (85)
T 2dt7_B 29 AFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLR-PQHSLFNYFTKLVEQY 83 (85)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCGGGGGGS-TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhcCCCCceeeCC-CCCCchHHHHHHHHHH
Confidence 445689999999999999999999999999999999997 6899999999998654
No 209
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.14 E-value=2.2e-11 Score=111.51 Aligned_cols=73 Identities=10% Similarity=0.136 Sum_probs=64.1
Q ss_pred EEcCCCCCCCHHHHHHHh------------ccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEEC
Q 003204 189 YVGNLSPQVDENFLLRTF------------GRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY 256 (839)
Q Consensus 189 fVgNLp~~vtEe~L~~lF------------~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~ 256 (839)
.+.||++.+++++|.++| ++||.|.+|+|+++ .+++++|||||.|.+.++|.+|+..|||..++
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~----~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDN----LGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCS----SSSSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeC----CCCCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 367899999998887777 99999999999852 23688999999999999999999999999999
Q ss_pred CeEEEEEee
Q 003204 257 EYELKIGWG 265 (839)
Q Consensus 257 Gr~IkV~~a 265 (839)
|++|+|.|+
T Consensus 95 Gr~i~v~~s 103 (104)
T 1jmt_A 95 GQPIHAELS 103 (104)
T ss_dssp TEECCEEEC
T ss_pred CEEEEEEEc
Confidence 999999984
No 210
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.12 E-value=9.5e-11 Score=124.45 Aligned_cols=80 Identities=11% Similarity=0.248 Sum_probs=70.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 263 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG-~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~ 263 (839)
.++|||+|||+.+|+++|+++|+.|| .|.+|+|+. +. .|.++|||||.|.+.++|.+|+..|||..++|+.|+|.
T Consensus 117 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~---~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 192 (292)
T 2ghp_A 117 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPS---LR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTK 192 (292)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-----------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEe---CC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 68999999999999999999999999 999999984 32 36789999999999999999999999999999999999
Q ss_pred eecCC
Q 003204 264 WGKSV 268 (839)
Q Consensus 264 ~ak~~ 268 (839)
|+.+.
T Consensus 193 ~a~~~ 197 (292)
T 2ghp_A 193 VSNPL 197 (292)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 98754
No 211
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.10 E-value=1.3e-10 Score=122.43 Aligned_cols=80 Identities=25% Similarity=0.445 Sum_probs=72.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHh-CCCEEC---CeEE
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEM-QGVVVY---EYEL 260 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~l-nG~~i~---Gr~I 260 (839)
.++|||+|||+.+|+++|+++|+.||.|.+|+|+. + .+|+++|||||.|.+.++|.+|+..| +|..+. |++|
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~---~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i 171 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVV---D-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPV 171 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---E-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBC
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeee---C-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceE
Confidence 57999999999999999999999999999999994 4 57899999999999999999999999 555555 9999
Q ss_pred EEEeecCC
Q 003204 261 KIGWGKSV 268 (839)
Q Consensus 261 kV~~ak~~ 268 (839)
.|.|+...
T Consensus 172 ~v~~~~~~ 179 (261)
T 3sde_A 172 IVEPMEQF 179 (261)
T ss_dssp EEEECCCE
T ss_pred EEeecccc
Confidence 99998754
No 212
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.07 E-value=1.2e-10 Score=128.11 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=67.6
Q ss_pred CCccEEEEcC--CCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEEC---C
Q 003204 183 PQTTNLYVGN--LSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY---E 257 (839)
Q Consensus 183 p~~ttLfVgN--Lp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~---G 257 (839)
..+.+||||| |+..+||++|+++|++||.|.+|.|. .+||||||+|.+.++|++|++.|||..+. |
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~---------~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP---------PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC---------TTCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe---------CCCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3578999999 57899999999999999999998776 15799999999999999999999999983 4
Q ss_pred e--EEEEEeecCCC
Q 003204 258 Y--ELKIGWGKSVA 269 (839)
Q Consensus 258 r--~IkV~~ak~~~ 269 (839)
+ .|+|.|...++
T Consensus 87 ~~~~ly~~~~~~~~ 100 (345)
T 3tht_A 87 QKITLYLNFVEKVQ 100 (345)
T ss_dssp CEEECEEEECSSEE
T ss_pred CceEEEEEEeeccc
Confidence 5 68888886543
No 213
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=5.1e-10 Score=102.02 Aligned_cols=65 Identities=18% Similarity=0.370 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEeecCCC
Q 003204 195 PQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 269 (839)
Q Consensus 195 ~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~ak~~~ 269 (839)
+.+|+++|+++|++||.|..|.|+ ++++|||||+|.+.++|+.|+..+++ +.|++|+|.|++..+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~--------~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS--------SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE--------SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc--------cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 568999999999999999999998 26789999999999999999988655 689999999988653
No 214
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.06 E-value=2.8e-10 Score=106.78 Aligned_cols=83 Identities=18% Similarity=0.159 Sum_probs=69.3
Q ss_pred CccEEEEcCCCC--C---CCHHHHHHHhccCCCeeEEEEeCCCCc-cccCCcccEEEEEeCCHHHHHHHHHHhCCCEECC
Q 003204 184 QTTNLYVGNLSP--Q---VDENFLLRTFGRFGPIASVKIMWPRTE-EERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 257 (839)
Q Consensus 184 ~~ttLfVgNLp~--~---vtEe~L~~lF~~fG~I~sVkI~~pr~d-~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~G 257 (839)
.++.|+|.|+-. + -.+++|+++|++||.|.+|+|+.++.. ..+++++||+||.|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 367899999842 1 236899999999999999999964321 2356778999999999999999999999999999
Q ss_pred eEEEEEeec
Q 003204 258 YELKIGWGK 266 (839)
Q Consensus 258 r~IkV~~ak 266 (839)
|.|+|.|..
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999854
No 215
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=98.85 E-value=5.8e-10 Score=109.19 Aligned_cols=128 Identities=18% Similarity=0.349 Sum_probs=102.1
Q ss_pred HHHHHHHHHhh-----ccchHHHHHHHHHHhhccccHHHHHHHHHHHhhccCCCcccceeeeeeeehhcccCCC-----C
Q 003204 448 RDEFEDMLRAL-----TLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSA-----P 517 (839)
Q Consensus 448 r~~l~~lL~~L-----t~tr~sI~~~m~w~l~ha~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhNs~~-----~ 517 (839)
.+.|+..|+.| ..++..|.....||++|..+...||++|.+.+... |...||..||+|..|..|+.. +
T Consensus 3 v~ef~~~L~sL~~lkp~iS~skI~~LT~~A~~nv~~~~~iv~~l~~~ikk~--p~~hKL~~LYVvDSIvR~~~~~~~k~g 80 (157)
T 3clj_A 3 FQNFVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLC--PDSHKLGSLYIIDSIGRAYLDETRSNS 80 (157)
T ss_dssp HHHHHHHHHGGGGCSSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHS--CGGGHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhC--CCcceeeeeeehHHHHHHHHHHHHhcC
Confidence 57899999988 46889999999999999999999999999998744 789999999999999999751 1
Q ss_pred C-CCh--hhh---HHHHHHhhHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhhccCccCcHHHHHHHHHHhc
Q 003204 518 V-KNA--SAY---RTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 585 (839)
Q Consensus 518 v-~na--~~y---R~~fe~~Lp~IF~~l~~~y~~~~~ri~ae~~k~kV~~vL~iWe~~~vfp~~~l~~L~~~fl 585 (839)
- .++ ..| ...|...++.+|..+ |..+ .+..|.||.+||++|+...+||++.|..|++.+.
T Consensus 81 ~~~~a~~gt~a~~v~~~~e~i~~l~~~~---~~~~-----~~~~k~Ki~klldiW~k~~~Fp~e~i~~i~~~~~ 146 (157)
T 3clj_A 81 NSSSNKPGTCAHAINTLGEVIQELLSDA---IAKS-----NQDHKEKIRMLLDIWDRSGLFQKSYLNAIRSKCF 146 (157)
T ss_dssp C----STTSHHHHHHHHHHHHHHHHHHH---HHHS-----CHHHHHHHHHHHHHHHHHTTTTTSCCTTTTSHHH
T ss_pred CccCCCCccHHHHHHHHHHHHHHHHHHH---HHcC-----CHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHhh
Confidence 1 000 123 234777788777742 3322 3788999999999999999999999988877664
No 216
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.78 E-value=1.1e-08 Score=95.38 Aligned_cols=75 Identities=11% Similarity=0.090 Sum_probs=62.8
Q ss_pred ccEEEEcCCCCCC----------CHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCE
Q 003204 185 TTNLYVGNLSPQV----------DENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV 254 (839)
Q Consensus 185 ~ttLfVgNLp~~v----------tEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~ 254 (839)
++.|.+.|+=..- .+++|+++|++||.|.+|.|.. + ..+|||||.|.+.++|.+|+..|||..
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~---~----~~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDK---N----SAQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECT---T----CTTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEec---C----CCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5667787763321 2357899999999999999974 1 258999999999999999999999999
Q ss_pred ECCeEEEEEeec
Q 003204 255 VYEYELKIGWGK 266 (839)
Q Consensus 255 i~Gr~IkV~~ak 266 (839)
++|+.|+|.|+.
T Consensus 80 f~GR~i~v~~~~ 91 (114)
T 3s6e_A 80 FAGKMITAAYVP 91 (114)
T ss_dssp ETTEECEEEEEC
T ss_pred ECCEEEEEEEEc
Confidence 999999999974
No 217
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.55 E-value=1.4e-07 Score=84.14 Aligned_cols=72 Identities=15% Similarity=0.273 Sum_probs=59.7
Q ss_pred CccEEEEcCCCC----CCCH----HHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEE
Q 003204 184 QTTNLYVGNLSP----QVDE----NFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV 255 (839)
Q Consensus 184 ~~ttLfVgNLp~----~vtE----e~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i 255 (839)
...||+|..++. +.-. .+|.+.|++||.|..|+|+. ..+||+|.+.++|.+|+. |||..+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~-----------d~~fVtF~d~~sAlaAi~-mnG~~v 73 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE-----------DKMWVTFLEGSSALNVLS-LNGKEL 73 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS-----------SSEEEEESSHHHHHHGGG-GTTCEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec-----------CCEEEEECChHHHHHHHh-cCCeEe
Confidence 346888887762 3333 57889999999999999993 227999999999999996 999999
Q ss_pred CCeEEEEEeecC
Q 003204 256 YEYELKIGWGKS 267 (839)
Q Consensus 256 ~Gr~IkV~~ak~ 267 (839)
+|+.|+|.++.+
T Consensus 74 ~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 74 LNRTITIALKSP 85 (91)
T ss_dssp TTEEEEEEECCC
T ss_pred CCeEEEEEeCCC
Confidence 999999998664
No 218
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.55 E-value=1.5e-07 Score=88.64 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=63.8
Q ss_pred CCccEEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCC-HHHHHHHHHHhC--CCEECCe
Q 003204 183 PQTTNLYVGNLSPQ-VDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN-RADGQAAKDEMQ--GVVVYEY 258 (839)
Q Consensus 183 p~~ttLfVgNLp~~-vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~-~~dAe~Al~~ln--G~~i~Gr 258 (839)
+.++-|||+||++. ++.++|+++|+.||.|..|.++. ....|||.|.+ ..+|..|+..|| |..|.|.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~---------g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVR---------GAKEGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCT---------TCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEec---------CCCEEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 46789999999999 99999999999999999999983 23369999999 899999999994 7778898
Q ss_pred EEEEEe
Q 003204 259 ELKIGW 264 (839)
Q Consensus 259 ~IkV~~ 264 (839)
.+++..
T Consensus 87 ~~~~ev 92 (121)
T 1owx_A 87 EVTWEV 92 (121)
T ss_dssp SEEEEE
T ss_pred EEEEEE
Confidence 877764
No 219
>1x4p_A Putative splicing factor, arginine/serine-rich 14; SURP domain, SFRS14 protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=98.50 E-value=5.6e-09 Score=85.76 Aligned_cols=54 Identities=24% Similarity=0.335 Sum_probs=47.5
Q ss_pred hhhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCcccccccCCCCCcceeeEEEeee
Q 003204 330 RHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSF 385 (839)
Q Consensus 330 ~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~Np~F~FL~d~~s~~h~YYrwrl~s~ 385 (839)
++++.+|+++|.||+..|++-+++-- .++||-|.||+|.+|.+|.|||-||.++
T Consensus 5 ~~~~~~ieKLa~fVaeGgpe~~~~a~--~k~nPaf~FL~D~~S~eykYYr~KlaE~ 58 (66)
T 1x4p_A 5 SSGVGTIDQLVKRVIEGSLSPKERTL--LKEDPAYWFLSDENSLEYKYYKLKLAEM 58 (66)
T ss_dssp CCSSHHHHHHHHHHHHTCSCHHHHHH--HHHSGGGCTTTCCSSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCCcHHHHHH--cccCCceeeeeCCCcHHHHHHHHHHHHH
Confidence 45778999999999999999766655 5679999999999999999999998765
No 220
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.33 E-value=4.9e-07 Score=92.54 Aligned_cols=68 Identities=21% Similarity=0.170 Sum_probs=60.6
Q ss_pred CHHHHHHHhccCCCeeEEEEeCCCC-ccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEee
Q 003204 198 DENFLLRTFGRFGPIASVKIMWPRT-EEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 265 (839)
Q Consensus 198 tEe~L~~lF~~fG~I~sVkI~~pr~-d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~IkV~~a 265 (839)
.+++|.+.|++||.|.+|+|..+.. +..+++++|++||.|.+.++|.+|+..|||..++||.|.+.+.
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 5688999999999999999986432 3456789999999999999999999999999999999999984
No 221
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.23 E-value=9.9e-07 Score=79.22 Aligned_cols=69 Identities=26% Similarity=0.360 Sum_probs=58.3
Q ss_pred CccEEEEcCCCCC------CCH---HHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCE
Q 003204 184 QTTNLYVGNLSPQ------VDE---NFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV 254 (839)
Q Consensus 184 ~~ttLfVgNLp~~------vtE---e~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~ 254 (839)
.-.||+|..+++. .++ .+|.+.|+.||.|..|+|.. ++ +||+|.+.++|.+|+. |||..
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~---d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQ---GQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEET---TE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEec---Cc--------EEEEEcChHHHHHHHh-cCCee
Confidence 3468999888743 232 46889999999999999994 21 8999999999999997 99999
Q ss_pred ECCeEEEEEe
Q 003204 255 VYEYELKIGW 264 (839)
Q Consensus 255 i~Gr~IkV~~ 264 (839)
++||.|+|.+
T Consensus 82 v~Gr~L~V~~ 91 (95)
T 1ufw_A 82 VKGRAVKISG 91 (95)
T ss_dssp ETTEEEEEEC
T ss_pred eCCeEEEEec
Confidence 9999999987
No 222
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=98.03 E-value=1.2e-06 Score=85.12 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=46.4
Q ss_pred hhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCcccccccCCCCCcceeeEEEee
Q 003204 331 HLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYS 384 (839)
Q Consensus 331 ~~~~~Idk~a~~V~~~G~~FE~~l~~re~~Np~F~FL~d~~s~~h~YYrwrl~s 384 (839)
.-..+|..||.||+++|. |+..|++|+. ||+|.||. +.+++|.||...+.+
T Consensus 6 ~dldIIklTA~FvArnG~-F~~~L~~re~-npqF~FL~-p~h~l~~~F~~lv~q 56 (152)
T 4dgw_B 6 RDMEVIKLTARYYAKDKS-IVEQMISKDG-EARLNFMN-SSHPLHKTFTDFVAQ 56 (152)
T ss_dssp HHHHHHHHHHHHHTTTSS-HHHHHHHHTC-CTTSGGGS-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHheecCH-HHHHHHHhcc-CcccccCC-CCCccHHHHHHHHHH
Confidence 345799999999999999 9999999999 99999995 899999999998754
No 223
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.66 E-value=0.00019 Score=65.54 Aligned_cols=78 Identities=12% Similarity=0.126 Sum_probs=65.2
Q ss_pred ccEEEEcCCCCCC-CH----HHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeE
Q 003204 185 TTNLYVGNLSPQV-DE----NFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (839)
Q Consensus 185 ~ttLfVgNLp~~v-tE----e~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~ 259 (839)
.++|+|.||+..| +. +.++.+|..|+++.+...+. +-.-..|.|.+.++|.+|...|++..++|++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk---------SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~ 75 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK---------SFKRVRINFSNPLSAADARLRLHKTEFLGKE 75 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET---------TTTEEEEECSSTTHHHHHHHTSTTSEETTEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC---------cceEEEEEeCChHHHHHHHHHhccceecCce
Confidence 4789999999876 32 46789999999999988772 2233589999999999999999999999999
Q ss_pred EEEEeecCCCCC
Q 003204 260 LKIGWGKSVALP 271 (839)
Q Consensus 260 IkV~~ak~~~~p 271 (839)
|+|-||.+..+.
T Consensus 76 ~r~YFgq~~~~~ 87 (104)
T 1wey_A 76 MKLYFAQTLHIG 87 (104)
T ss_dssp CEEECCCCSSCC
T ss_pred eEEEecCCCCCc
Confidence 999999966543
No 224
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=97.46 E-value=7.9e-06 Score=66.86 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.9
Q ss_pred CCCCCCChHHhhcccceeeeeeecc
Q 003204 814 QPDSGMNEEQRSDHRLLSFAFLLIE 838 (839)
Q Consensus 814 ~~~~~~~~e~r~~~r~~~~~~~~~~ 838 (839)
+.|++||||+||+||+|||+||+|+
T Consensus 5 ~~~~~~~ee~r~klR~IEvk~me~r 29 (61)
T 2e62_A 5 SSGNGMDEEQRQKRRRIEVALIEYR 29 (61)
T ss_dssp CCCSSTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHHHHHH
Confidence 3577999999999999999999996
No 225
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00077 Score=61.96 Aligned_cols=70 Identities=13% Similarity=0.103 Sum_probs=63.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccC-----CCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCeE
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRF-----GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 259 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~f-----G~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr~ 259 (839)
.++|-+-|||..|+...++.+...| |.|..|.+.. ..+-|+|.|.+...|-+|.-+|||..+.|+.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p---------DH~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS---------DFNGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET---------TTTEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEec---------CCCceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3678888999999999999999999 9999998883 3467899999999999999999999999999
Q ss_pred EEEE
Q 003204 260 LKIG 263 (839)
Q Consensus 260 IkV~ 263 (839)
|+|+
T Consensus 92 Lr~g 95 (117)
T 2l9w_A 92 IRSG 95 (117)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9997
No 226
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.23 E-value=0.066 Score=48.71 Aligned_cols=68 Identities=21% Similarity=0.260 Sum_probs=56.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcc-----CCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECCe
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGR-----FGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 258 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~-----fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~Gr 258 (839)
...+|.|.|||+.++++.|.-+|.. -|.|.+|+.. . +-|+|+|.+...|++.+ .-..+.++|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~----------~-~~AvItF~d~~va~rVL-~k~~H~L~~~ 74 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL----------G-CGGVLTFREPADAERVL-AQADHELHGA 74 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE----------T-TEEEEEESSHHHHHHHH-TCSCCBSSSS
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc----------C-CcEEEEEcChHHHHHHh-cCCcceecCe
Confidence 4689999999999999999999965 2668888876 1 67899999999999987 3335778888
Q ss_pred EEEEE
Q 003204 259 ELKIG 263 (839)
Q Consensus 259 ~IkV~ 263 (839)
+|.|.
T Consensus 75 ~LsV~ 79 (104)
T 2dhx_A 75 QLSLR 79 (104)
T ss_dssp BCEEE
T ss_pred EEEEE
Confidence 88884
No 227
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.69 E-value=0.22 Score=44.34 Aligned_cols=69 Identities=13% Similarity=0.219 Sum_probs=53.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccC-CcccEEEEEeCCHHHHHHHHHHhCCCEEC
Q 003204 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERR-RQRNCGFVAFMNRADGQAAKDEMQGVVVY 256 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg-~~rg~gFV~F~~~~dAe~Al~~lnG~~i~ 256 (839)
+.|-|.+|||++||+++.+.++.+..+.....+. .+-..+ ..-.-|+|.|.+.+++..-.+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~--G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFS--NDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEE--SCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeC--CccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5789999999999999999999988776665542 111111 12245899999999999999999999874
No 228
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.57 E-value=0.11 Score=48.43 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=55.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCEECC-eEEEE
Q 003204 184 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE-YELKI 262 (839)
Q Consensus 184 ~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~i~G-r~IkV 262 (839)
..+.|.|-+.|+.. -..+...|++||.|.+.... ...++-.|.|.++.+|++|| ..||..++| -.|-|
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---------~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---------NTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGV 91 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---------SSSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---------CCCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEE
Confidence 46789999999996 45666789999999987652 24578999999999999999 779999985 44445
Q ss_pred Ee
Q 003204 263 GW 264 (839)
Q Consensus 263 ~~ 264 (839)
.+
T Consensus 92 ~p 93 (119)
T 1wwh_A 92 KP 93 (119)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 229
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=94.18 E-value=0.05 Score=43.35 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=34.9
Q ss_pred HHhcCChHHHHHHHHHcCcccccChHHHHHHHHhHHHHHH
Q 003204 636 ELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLEDAEK 675 (839)
Q Consensus 636 ~~~~~~~~~l~~~c~~~Gl~~~~~~~~~i~rL~~~~~~~~ 675 (839)
.|.++-..+|+..|+.+||...|.+..||+||..+.+.+.
T Consensus 4 ~~~kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~~~~~~ 43 (51)
T 1h1j_S 4 DYSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEESK 43 (51)
T ss_dssp SGGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHSC
T ss_pred hHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHhcc
Confidence 3667888999999999999999999999999988766543
No 230
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=93.97 E-value=0.058 Score=48.63 Aligned_cols=58 Identities=17% Similarity=0.312 Sum_probs=45.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhC
Q 003204 183 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ 251 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~ln 251 (839)
+....||+-+.|+...-.+|..+|+.||.|. |+.+ | -..|||.|.+++.|..|+..+.
T Consensus 13 p~r~HVf~l~FP~ewKt~DI~~lFs~fggv~-I~Wi----d------DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQ-ISWI----D------DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEEECCTTCCHHHHHHHHTTTCSCC-CEEE----E------TTEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCChhhhhHHHHHHhhccCCEE-EEEE----c------CCeEEEEecCHHHHHHHHHhcc
Confidence 3345555559999999999999999999543 4444 2 2468999999999999998763
No 231
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=92.77 E-value=0.098 Score=47.28 Aligned_cols=54 Identities=17% Similarity=0.364 Sum_probs=43.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhC
Q 003204 187 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ 251 (839)
Q Consensus 187 tLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~ln 251 (839)
.||+-+.|+...-.+|..+|+.|| .|.|.| -| -..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fg---gv~I~W--id------DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFG---NIQISW--ID------DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSE---EEEEEE--EE------TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccC---CEEEEE--Ec------CCeEEEEecCHHHHHHHHHhcc
Confidence 444449999999999999999999 444555 12 3468999999999999998764
No 232
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=92.42 E-value=0.11 Score=44.52 Aligned_cols=39 Identities=21% Similarity=0.413 Sum_probs=34.4
Q ss_pred HHhcCChHHHHHHHHHcCcccccChHHHHHHHHhHHHHH
Q 003204 636 ELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLEDAE 674 (839)
Q Consensus 636 ~~~~~~~~~l~~~c~~~Gl~~~~~~~~~i~rL~~~~~~~ 674 (839)
.|.++-..+|+..|+.+||...|.+..||+||..+.+.+
T Consensus 25 ~l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~~ 63 (75)
T 2kvu_A 25 NLDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQI 63 (75)
T ss_dssp TTTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcc
Confidence 566788899999999999999999999999999776543
No 233
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=92.38 E-value=0.12 Score=41.80 Aligned_cols=38 Identities=29% Similarity=0.496 Sum_probs=33.0
Q ss_pred HhcCChHHHHHHHHHcCcccccChHHHHHHHHhHHHHH
Q 003204 637 LMNLPLSELERRCRHNGLSLVGGREMMVARLLSLEDAE 674 (839)
Q Consensus 637 ~~~~~~~~l~~~c~~~Gl~~~~~~~~~i~rL~~~~~~~ 674 (839)
|.++-..+|...|+.+||...|.+..||+||..+-.-+
T Consensus 10 l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~~ 47 (55)
T 2do1_A 10 LHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEEH 47 (55)
T ss_dssp TTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHT
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Confidence 45677899999999999999999999999998775443
No 234
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=91.83 E-value=0.2 Score=39.80 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=31.9
Q ss_pred HHhcCChHHHHHHHHHcCcccccChHHHHHHHHhHH
Q 003204 636 ELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLE 671 (839)
Q Consensus 636 ~~~~~~~~~l~~~c~~~Gl~~~~~~~~~i~rL~~~~ 671 (839)
.|.+|-..+|+..|+.+||...|.+..||+||..+.
T Consensus 9 ~~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~ 44 (50)
T 1zrj_A 9 DVRRLKVNELREELQRRGLDTRGLKAELAERLQAAL 44 (50)
T ss_dssp CGGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHH
T ss_pred CHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 356788899999999999999999999999998654
No 235
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=88.79 E-value=0.38 Score=45.56 Aligned_cols=78 Identities=14% Similarity=0.070 Sum_probs=53.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEE-EEeCCCC---------ccccC-CcccEEEEEeCCHHHHHHHHHHhCCCE
Q 003204 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASV-KIMWPRT---------EEERR-RQRNCGFVAFMNRADGQAAKDEMQGVV 254 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~L~~lF~~fG~I~sV-kI~~pr~---------d~~tg-~~rg~gFV~F~~~~dAe~Al~~lnG~~ 254 (839)
+.|.|-+.|+..+. .+...|++||.|..- .+..+.. ....+ ...++-.|.|.+..+|.+|+ ..||.+
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTCE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCeE
Confidence 56777788777654 555679999998762 1110000 00000 13578899999999999998 899999
Q ss_pred ECCeEEEEEee
Q 003204 255 VYEYELKIGWG 265 (839)
Q Consensus 255 i~Gr~IkV~~a 265 (839)
++|.-|-|-+-
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 99987777653
No 236
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=85.94 E-value=0.21 Score=47.35 Aligned_cols=39 Identities=8% Similarity=-0.066 Sum_probs=35.9
Q ss_pred CcccEEEEEeCCHHHHHHHHHHh-CCCEECCeEEEEEeecC
Q 003204 228 RQRNCGFVAFMNRADGQAAKDEM-QGVVVYEYELKIGWGKS 267 (839)
Q Consensus 228 ~~rg~gFV~F~~~~dAe~Al~~l-nG~~i~Gr~IkV~~ak~ 267 (839)
..+|+++|.|.+.++|++|+..| ||..++| .|.+.++..
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 56899999999999999999999 9999999 999998764
No 237
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=85.01 E-value=0.9 Score=41.95 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=34.9
Q ss_pred HHHHhcCChHHHHHHHHHcCcccccChHHHHHHHHhHHH
Q 003204 634 IKELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLED 672 (839)
Q Consensus 634 ~~~~~~~~~~~l~~~c~~~Gl~~~~~~~~~i~rL~~~~~ 672 (839)
...+.++-.+||...|+..||...|.+..|++||..|=+
T Consensus 34 ~~~l~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~ 72 (114)
T 2rnn_A 34 ITLMELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQ 72 (114)
T ss_dssp HHHHTTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHH
Confidence 446888999999999999999999999999999987633
No 238
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=84.50 E-value=0.58 Score=44.40 Aligned_cols=36 Identities=6% Similarity=0.035 Sum_probs=28.5
Q ss_pred EEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCCCE
Q 003204 214 SVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV 254 (839)
Q Consensus 214 sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG~~ 254 (839)
+++|+. + ..+.+|||||.|.+.++|++|+..+++..
T Consensus 2 ~~kl~l---n--~~~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLIL---N--GKTLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEE---E--CSSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEe---c--CccccchhHHHHHHHHhHHHHHHhhcccC
Confidence 466663 2 23689999999999999999998888644
No 239
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=83.33 E-value=0.56 Score=53.33 Aligned_cols=53 Identities=19% Similarity=0.316 Sum_probs=39.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHH
Q 003204 186 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 247 (839)
Q Consensus 186 ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al 247 (839)
.+|||. .|..+++.+|.++|++||+|.++-.. .. ...|+.|+|.+.+++..++
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~-----~~---~g~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFY-----ES---FGLYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEE-----CS---SSEEEEEECC---CCHHHH
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEE-----cc---CCeEEEEEeCCHHHHHHHH
Confidence 689997 79999999999999999999998765 11 2369999999998888664
No 240
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=82.81 E-value=1.7 Score=39.07 Aligned_cols=70 Identities=11% Similarity=0.178 Sum_probs=49.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCC-cccEEEEEeCCHHHHHHHHHHhCCCEEC
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRR-QRNCGFVAFMNRADGQAAKDEMQGVVVY 256 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~-~rg~gFV~F~~~~dAe~Al~~lnG~~i~ 256 (839)
+-.|-|..|||.+||+++.+.++..-.+.....+ |- +-..+. .-.-|+|.|.+.++...-.+.++|..+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv-~G-~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFF-AA-DLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCC-CC-CSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEe-CC-ccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 4578999999999999998887765444322222 11 111111 1235799999999999999999999873
No 241
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=68.59 E-value=3.2 Score=40.15 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=33.1
Q ss_pred HHHhcCChHHHHHHHHHcCcccccChHHHHHHHHhH
Q 003204 635 KELMNLPLSELERRCRHNGLSLVGGREMMVARLLSL 670 (839)
Q Consensus 635 ~~~~~~~~~~l~~~c~~~Gl~~~~~~~~~i~rL~~~ 670 (839)
-.|.++...+|...|+.+||...|.+..||+||..+
T Consensus 59 g~L~kltV~eLK~~l~~~gL~~~GkKadLI~Ri~~~ 94 (151)
T 1jjr_A 59 GTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKH 94 (151)
T ss_dssp TCTTSSCHHHHHHHHHHHTCCCCSSSHHHHHHHHHT
T ss_pred CcHHhccHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Confidence 367789999999999999999999999999999866
No 242
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=61.78 E-value=18 Score=41.50 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=45.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEeCCHHHHHHHHHHhCC
Q 003204 185 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG 252 (839)
Q Consensus 185 ~ttLfVgNLp~~vtEe~L~~lF~~fG~I~sVkI~~pr~d~~tg~~rg~gFV~F~~~~dAe~Al~~lnG 252 (839)
...++|+ +|+.+...+|.++|+.||. .+|+.+ ...++||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~wi----------ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWI----------DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEEC----------SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEE----------cCCeEEEEECCHHHHHHHHHHHHh
Confidence 3456666 8999999999999999994 345544 346799999999999999998853
No 243
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=41.60 E-value=5.5 Score=35.74 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=0.0
Q ss_pred CCccEEEEcCCCCCCCHHH
Q 003204 183 PQTTNLYVGNLSPQVDENF 201 (839)
Q Consensus 183 p~~ttLfVgNLp~~vtEe~ 201 (839)
...++|||+|||+++|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3567899999999999864
No 244
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=29.55 E-value=11 Score=36.37 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHhcCChHHHHHHHHHcCcccccChHHHHHHHHhH
Q 003204 636 ELMNLPLSELERRCRHNGLSLVGGREMMVARLLSL 670 (839)
Q Consensus 636 ~~~~~~~~~l~~~c~~~Gl~~~~~~~~~i~rL~~~ 670 (839)
.+.++...+|.-+|+.+||...|.+..||+||..+
T Consensus 114 ~l~klTV~~Lk~~l~~~gl~~~GkKaeLieRi~~~ 148 (151)
T 1jjr_A 114 TLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKH 148 (151)
T ss_dssp -----------------------------------
T ss_pred ccccccHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 56677889999999999999999999999999654
No 245
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp}
Probab=28.34 E-value=67 Score=28.87 Aligned_cols=37 Identities=24% Similarity=0.392 Sum_probs=32.8
Q ss_pred HHHhcCChHHHHHHHHHcCcccccChHHHHHHHHhHH
Q 003204 635 KELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLE 671 (839)
Q Consensus 635 ~~~~~~~~~~l~~~c~~~Gl~~~~~~~~~i~rL~~~~ 671 (839)
.++.-..+.+|+-.--+-||+..|.++.||+|.+.+=
T Consensus 15 ~kl~~frikelkdvl~~lgl~kqgkKqdL~Dril~ll 51 (110)
T 2rno_A 15 DKLAYFRIKELKDILNQLGLPKQGKKQDLIDRVLALL 51 (110)
T ss_dssp HHHHHSCHHHHHHHHHHHTCCSCCCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhCCcccCccHHHHHHHHHHc
Confidence 4666778999999999999999999999999998764
No 246
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=27.11 E-value=1e+02 Score=29.71 Aligned_cols=74 Identities=12% Similarity=0.288 Sum_probs=49.1
Q ss_pred ccHHHHHHHHHHHhhccCCCcccceeeeeeeehhcccCCCCCCChhhhH-----HHHHHhhHHHHHHHHHHhhhhccccc
Q 003204 477 DAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYR-----TKFEATLPDIMESFNDLYRSITGRIT 551 (839)
Q Consensus 477 ~~a~eIv~~i~~~l~~~~t~~~~KLa~LYLinDILhNs~~~v~na~~yR-----~~fe~~Lp~IF~~l~~~y~~~~~ri~ 551 (839)
..+.+.+.+|.+.|.... ....+.-|-|+.=++.||. ..|. ..|-..|..|+. +-.
T Consensus 48 ~~~keA~ral~krl~~~n--~~vql~AL~LLd~~vkNcG------~~Fh~evas~~Fl~el~~l~~-----------~~~ 108 (163)
T 1x5b_A 48 NGAKDCLKAIMKRVNHKV--PHVALQALTLLGACVANCG------KIFHLEVCSRDFATEVRAVIK-----------NKA 108 (163)
T ss_dssp SHHHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHTC------HHHHHHHTSHHHHHHHHHHHH-----------TTC
T ss_pred ccHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHhh------HHHHHHHhhHHHHHHHHHHHc-----------cCC
Confidence 357888889999886543 4555667778888888885 2344 233333333332 113
Q ss_pred hHHHHHHHHHHHHhhccC
Q 003204 552 AEALKERVLKVLQVWSDW 569 (839)
Q Consensus 552 ae~~k~kV~~vL~iWe~~ 569 (839)
....+++|+.+|..|.+.
T Consensus 109 ~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 109 HPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 458999999999999864
No 247
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=20.35 E-value=94 Score=32.33 Aligned_cols=39 Identities=28% Similarity=0.413 Sum_probs=31.3
Q ss_pred HhcCChHHHHHHHHHcCccccc-ChHHHHHHH-HhHHHHHH
Q 003204 637 LMNLPLSELERRCRHNGLSLVG-GREMMVARL-LSLEDAEK 675 (839)
Q Consensus 637 ~~~~~~~~l~~~c~~~Gl~~~~-~~~~~i~rL-~~~~~~~~ 675 (839)
..++..+||..+|..+||-..| +.+.|...| .||+=+-.
T Consensus 144 V~sLs~~ELr~AC~~RGm~~~gls~e~LR~~L~~WL~Lsl~ 184 (249)
T 3skq_A 144 VESLSQEELYQACVSRGMKAYGVSKEDLVDNLKVWLELRLR 184 (249)
T ss_dssp GGGSCHHHHHHHHHHTTCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHcc
Confidence 4568899999999999998886 788899888 55554443
Done!