BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003205
(839 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55C58|VPS16_DICDI Vacuolar protein sorting-associated protein 16 homolog
OS=Dictyostelium discoideum GN=vps16 PE=3 SV=2
Length = 832
Score = 558 bits (1439), Expect = e-158, Method: Compositional matrix adjust.
Identities = 312/828 (37%), Positives = 489/828 (59%), Gaps = 44/828 (5%)
Query: 6 VAAEWQLVYNRYYRKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESAL 65
+AA+W+++ N Y K E+Y M W +DL + +PF GPIAV+RD SK V++ +++
Sbjct: 2 IAAQWKIIGNSTYIKKEIYSMSW-DVDLKQQVSVGSPFAGPIAVMRDSSKFVEMNSQNMK 60
Query: 66 RKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNAS 125
L+IF ++G LIS+ +W + ++ M W E + L+ V+Q+ TV +N+ E + S
Sbjct: 61 PYLKIFTASGDLISQMIW-DSSKNIVAMDWIEKERLVIVLQNATVLIFNVFCEQMT-QFS 118
Query: 126 MGKECFEENVVECVFWGNGVVCVTEANRYFC---MADFATMKVCELARPEVEELPHCV-- 180
+G EE ++EC W +G+V +T A++ + + DF + P + E P
Sbjct: 119 LGDIVREEEILECKIWSDGIVVLTSASQLYSVPSINDFFVESGRVIRLPPLPEEPKARPE 178
Query: 181 -AVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQKVDDTLS--QKMAVSPNGNFVACFTHD 237
A++EP+++++ S+E+ + + + ++DED V+ + QKM VSP G +ACF
Sbjct: 179 WAILEPQFSLSQSIEIFMSINGTLYLIDEDKVESQLEATEPIQKMVVSPCGKKLACFDTK 238
Query: 238 GRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFY-- 295
G L++ T+ S+ D A + WCG D V++YW+ + +P+ +++
Sbjct: 239 GTLLILKTDGSTTNPDRMDTKATKSPVLKWCGSDGVMMYWDSI-------KDPILFYFSK 291
Query: 296 ---------DEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALD 346
D+P+ L+ E DG+RI+S+++ EF +V T IF IG+TSPA++LYDA D
Sbjct: 292 GDSWAKFTLDQPVSLVTEIDGLRIISDTTSEFFHKVSDVTIDIFKIGTTSPASILYDATD 351
Query: 347 HFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRD 406
HF +S +ADE++R I L AV CI AAG EF+ Q LL+AAS+G+ F N+
Sbjct: 352 HFISKSPQADESIRSINDQLEDAVNDCILAAGFEFNGGEQSKLLKAASFGKCFLENYNPS 411
Query: 407 RIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMN 466
+ MC++LRVLNA R EIGIPLSI+QY + LI RLI+ HLLA RI +YL +
Sbjct: 412 QFVTMCRSLRVLNAVRHHEIGIPLSIKQYYHIGIEELIDRLISRRKHLLAWRICDYLKIK 471
Query: 467 QEVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLV 526
+VV+ HWAC+K+ IPD L +I++ KL+ GIS+A +A+ A +GR KLA L+
Sbjct: 472 SDVVLNHWACTKVRTD--IPDQELGKIIIKKLESVPGISFANIASAAYLAGRSKLATKLL 529
Query: 527 EHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPL 586
E+EP++++QVP L+ +GE AL KA ESGDTDLVYLV+ + + P +F + ++ +
Sbjct: 530 EYEPKAAEQVPPLIKMGESGLALNKAIESGDTDLVYLVLLAMQRSLPLADFLELTFSKVV 589
Query: 587 ACDLFTVYARCYKHEF--LKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRI 644
A DL + K++F L++ + Q +E+ + +E+ ++S+ S L RI
Sbjct: 590 ALDLLISMCK-QKNDFPLLREIYHIKDQSKEMGNIYLQEA-------LSSHPSQLDQ-RI 640
Query: 645 KRIEKA--HSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCI 702
K K+ H S+ K+ SK ++ KL +Q ELE + + FV SI+DTI I
Sbjct: 641 KAYNKSIEHYHHSKDKDDQATSKFIDDQIKLEMLQKELETNLQDESFVGISINDTIYKLI 700
Query: 703 VLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACV 762
+ + A +++EFKV +KR++W+K+ AL+ DW+ L +FSKEK+ PIGY PFVE C+
Sbjct: 701 TMNQPKKAQSIRSEFKVPDKRFWWIKIKALSIMNDWEELMKFSKEKKSPIGYEPFVEVCL 760
Query: 763 DADEKGEALKYIPKLVDPRERAEAYARIGMAKEAADAASQAKDGELLG 810
D + EALKYIPK+ D + + Y +IG +EAAD A + K+ +LL
Sbjct: 761 DQKNQIEALKYIPKITDILPKIQFYIQIGYFREAADIAFKEKNFDLLN 808
>sp|Q920Q4|VPS16_MOUSE Vacuolar protein sorting-associated protein 16 homolog OS=Mus
musculus GN=Vps16 PE=1 SV=3
Length = 839
Score = 443 bits (1139), Expect = e-123, Method: Compositional matrix adjust.
Identities = 293/845 (34%), Positives = 457/845 (54%), Gaps = 61/845 (7%)
Query: 17 YYRKPELYQMRWK-HIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG 75
+YRK ELY M W +L VA AP+GGPIA++R+ + + A S L I++++G
Sbjct: 16 FYRKYELYSMDWDLKEELKDCLVAAAPYGGPIALLRNCWRKEK--AASVRPVLEIYSASG 73
Query: 76 VLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENV 135
+ ++ +WK+ G ++ + WS ++ L+CV +DG V Y +H + + SMG E + V
Sbjct: 74 LPLASLLWKS--GPVVALGWSAEEELLCVQEDGAVLVYGLHGDF-RRHFSMGNEVLQNRV 130
Query: 136 VEC-VF---WGNGVVCVTEANRYFCMADFATMKVCELARPEV---------------EEL 176
++ +F +G+GV +T A R+ A+ +K+ + PEV + +
Sbjct: 131 LDARIFHTEFGSGVAILTGAYRFTLSANVGDLKLRRM--PEVPGLQSAPSCWTTLCHDRV 188
Query: 177 PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQKVDDTLSQKMAVSPNGNFVACFTH 236
PH + + P + T AG+ GV +MAVS ++A FT
Sbjct: 189 PHILLAVGPDLYLLDHATCSAVTPAGL----APGVSSF-----LQMAVSFTYRYLALFTD 239
Query: 237 DGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMD-----SVLLYWNDMLVMVAPQAEPV 291
G + + + + + +C PP+Q+ WC +V++ W L++V E +
Sbjct: 240 TGYIWMGTASLKEKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERRLMVVGNAPESI 299
Query: 292 QYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRR 351
Q+ DE L+PE DGVRI S S+ EFL VP ++E+IF I S +P ALL +A +++
Sbjct: 300 QFVLDEDSYLVPELDGVRIFSRSTHEFLHEVPVASEEIFKIASMAPGALLLEAQKEYEKE 359
Query: 352 SAKADENLRLIR--ASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQ 409
S KADE LR I+ L +AV+ CI+AAGHE Q++LLRAAS+G+ F F D
Sbjct: 360 SQKADEYLREIQELGQLIQAVQQCIEAAGHEHQPDMQKSLLRAASFGKCFLDRFPPDSFV 419
Query: 410 EMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQ-- 467
MC+ LRVLNA RD IGIPL+ QYK LT VL+ RL+ + LA++I EYL + +
Sbjct: 420 HMCQDLRVLNAIRDYHIGIPLTYTQYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQ 479
Query: 468 --EVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAML 525
++ HWAC K A + D + + KL G+SY+ +AA A GR +LA L
Sbjct: 480 GVSRILAHWACYKARA-WDMRDEDVARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKL 538
Query: 526 VEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRP 585
+E+EPRS +QVPLLL + AL KA ESGDTDLV+ V+ H+ + +FF ++ +P
Sbjct: 539 LEYEPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQP 598
Query: 586 LACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIK 645
+A L+ + + + + LKD + QE+ + S+ + + G R+
Sbjct: 599 MALSLYRQFCKHQELDTLKDLYNQDDNHQELGSFHIRASY--------AAEERIEG-RVA 649
Query: 646 RIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLG 705
++ A F + K + F +KA E+ +LLRIQ LE F+D S+ DT+ T I+ G
Sbjct: 650 ALQTAADAFYKAK-NEFAAKATEDQMRLLRIQRRLE-DELGGRFLDLSLHDTVTTLILGG 707
Query: 706 NHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDAD 765
+++ A ++ +F++ +KR +WLK+ ALA DW+ LE+FSK K+ PIGY PFVE C+
Sbjct: 708 HNKRAEQLARDFRIPDKRLWWLKLAALADLEDWEELEKFSKSKKSPIGYLPFVEICMKQH 767
Query: 766 EKGEALKYIPKLVDPRERAEAYARIGMAKEAADAASQAKDGELLGRLKLTFAQNAAASSI 825
K EA KY + V P ++ +A +G +AA+ A + ++ L L L+ A +I
Sbjct: 768 NKHEAKKYASR-VGPEQKVKALLLVGDVAQAAEVAIEHRNETELS-LVLSHCTGATDGAI 825
Query: 826 FDTLR 830
D ++
Sbjct: 826 ADKIQ 830
>sp|Q9H269|VPS16_HUMAN Vacuolar protein sorting-associated protein 16 homolog OS=Homo
sapiens GN=VPS16 PE=1 SV=2
Length = 839
Score = 437 bits (1123), Expect = e-121, Method: Compositional matrix adjust.
Identities = 285/813 (35%), Positives = 448/813 (55%), Gaps = 46/813 (5%)
Query: 17 YYRKPELYQMRWKHIDLSRN-KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG 75
+YRK ELY M W + R+ VA AP+GGPIA++R+ + + A S L I++++G
Sbjct: 16 FYRKYELYSMDWDLKEELRDCLVAAAPYGGPIALLRNPWRKEK--AASVRPVLDIYSASG 73
Query: 76 VLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENV 135
+ ++ +WK+ G ++ + WS ++ L+CV +DG V Y +H + + SMG E + V
Sbjct: 74 MPLASLLWKS--GPVVSLGWSAEEELLCVQEDGAVLVYGLHGDF-RRHFSMGNEVLQNRV 130
Query: 136 VEC-VF---WGNGVVCVTEANRYFCMADFATMKVCELAR-PEVEELPHCVAVIEPKYTMT 190
++ +F +G+GV +T A+R+ A+ +K+ + P ++ P C V+
Sbjct: 131 LDARIFHTEFGSGVAILTGAHRFTLSANVGDLKLRRMPEVPGLQSAPSCWTVL----CQD 186
Query: 191 GSVEVLIGTDAGILMLDEDGVQKVDD-------TLSQKMAVSPNGNFVACFTHDGRLVVN 243
+L+ + +LD V + +MAVS +A FT G + +
Sbjct: 187 RVAHILLAVGPDLYLLDHAACSAVTPPGLAPGVSSFLQMAVSFTYRHLALFTDTGYIWMG 246
Query: 244 NTNFSSPVIDESCESALPPEQIAWCGMD-----SVLLYWNDMLVMVAPQAEPVQYFYDEP 298
+ + + +C PP+Q+ WC +V++ W L++V E +Q+ DE
Sbjct: 247 TASLKEKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERRLMVVGDAPESIQFVLDED 306
Query: 299 LVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADEN 358
L+PE DGVRI S S+ EFL VPA++E+IF I S +P ALL +A +++ S KADE
Sbjct: 307 SYLVPELDGVRIFSRSTHEFLHEVPAASEEIFKIASMAPGALLLEAQKEYEKESQKADEY 366
Query: 359 LRLIR--ASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLR 416
LR I+ L +AV+ CI+AAGHE Q++LLRAAS+G+ F F D MC+ LR
Sbjct: 367 LREIQELGQLTQAVQQCIEAAGHEHQPDMQKSLLRAASFGKCFLDRFPPDSFVHMCQDLR 426
Query: 417 VLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQ----EVVIM 472
VLNA RD IGIPL+ QYK LT VL+ RL+ + LA++I EYL + + ++
Sbjct: 427 VLNAVRDYHIGIPLTYSQYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQGVSRILA 486
Query: 473 HWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRS 532
HWAC K+ + D + + KL G+SY+ +AA A GR +LA L+E+EPRS
Sbjct: 487 HWACYKVQQK-DVSDEDVARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEPRS 545
Query: 533 SKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFT 592
+QVPLLL + AL KA ESGDTDLV+ V+ H+ + +FF ++ +P+A L+
Sbjct: 546 GEQVPLLLKMKRSKLALSKAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMALSLYR 605
Query: 593 VYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEKAHS 652
+ + + E LKD + QE+ + S+ + + G R+ ++ A
Sbjct: 606 QFCKHQELETLKDLYNQDDNHQELGSFHIRASY--------AAEERIEG-RVAALQTAAD 656
Query: 653 LFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMK 712
F + K + F +KA E+ +LLR+Q LE F+D S+ DT+ T I+ G+++ A +
Sbjct: 657 AFYKAK-NEFAAKATEDQMRLLRLQRRLE-DELGGQFLDLSLHDTVTTLILGGHNKRAEQ 714
Query: 713 VKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALK 772
+ +F++ +KR +WLK+ ALA DW+ LE+FSK K+ PIGY PFVE C+ K EA K
Sbjct: 715 LARDFRIPDKRLWWLKLTALADLEDWEELEKFSKSKKSPIGYLPFVEICMKQHNKYEAKK 774
Query: 773 YIPKLVDPRERAEAYARIGMAKEAADAASQAKD 805
Y + V P ++ +A +G +AAD A + ++
Sbjct: 775 YASR-VGPEQKVKALLLVGDVAQAADVAIEHRN 806
>sp|Q5E9L7|VPS16_BOVIN Vacuolar protein sorting-associated protein 16 homolog OS=Bos
taurus GN=VPS16 PE=2 SV=1
Length = 839
Score = 435 bits (1119), Expect = e-121, Method: Compositional matrix adjust.
Identities = 287/815 (35%), Positives = 447/815 (54%), Gaps = 50/815 (6%)
Query: 17 YYRKPELYQMRWKHIDLSRN-KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG 75
+YRK ELY M W + R+ VA AP+GGPIA++R+ + + SA L I++++G
Sbjct: 16 FYRKYELYSMDWDLKEELRDCLVAAAPYGGPIALLRNPWRKEK--PASARPVLEIYSASG 73
Query: 76 VLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENV 135
V ++ +WK+ G ++ + WS ++ L+CV +DG V Y +H + + SMG E + V
Sbjct: 74 VPLASLLWKS--GPVVSLGWSAEEELLCVQEDGVVLVYGLHGDF-RRHFSMGNEVLQNRV 130
Query: 136 VEC-VF---WGNGVVCVTEANRYFCMADFATMKVCELARPEVEEL---PHCVAVIEPKYT 188
++ +F +G+GV +T A+R+ A+ +K+ + PEV L P C +
Sbjct: 131 LDARIFHTEFGSGVAILTGAHRFTLSANVGDLKLRRM--PEVPGLXSAPSCWTTV----C 184
Query: 189 MTGSVEVLIGTDAGILMLDEDGVQKVDD-------TLSQKMAVSPNGNFVACFTHDGRLV 241
+L+ + +LD V + +MAVS +A FT G +
Sbjct: 185 QDRVAHILLAVGPDLYLLDHAACSAVTPPGLAPGVSSFLQMAVSFTYRHLALFTDTGYIW 244
Query: 242 VNNTNFSSPVIDESCESALPPEQIAWCGMD-----SVLLYWNDMLVMVAPQAEPVQYFYD 296
+ + + + +C PP+Q+ WC +V++ W L++V E +Q+ D
Sbjct: 245 MGTASLKEKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERRLMVVGDAPESIQFVLD 304
Query: 297 EPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKAD 356
E L+PE DGVR+ S S+ EFL VP ++E+IF I S +P ALL +A +++ S KAD
Sbjct: 305 EDSYLVPELDGVRVFSRSTHEFLHEVPVASEEIFKIASMAPGALLLEAQKEYEKESQKAD 364
Query: 357 ENLRLIR--ASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKT 414
E LR I+ LP+AV+ CI+AAGHE Q++LLRAAS+G+ F F D MC+
Sbjct: 365 EYLREIQELGQLPQAVQQCIEAAGHEHWPDMQKSLLRAASFGKCFLDRFPPDSFVRMCQD 424
Query: 415 LRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQ----EVV 470
LRVLNA RD IGIPL+ QYK LT VL+ RL+ + LA++I EYL + + +
Sbjct: 425 LRVLNAIRDYHIGIPLTYSQYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQGVSRI 484
Query: 471 IMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEP 530
+ HWAC K+ + D + + KL G+SY+ +AA A GR +LA L+E+EP
Sbjct: 485 LAHWACYKVQQK-DVSDEDVARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEP 543
Query: 531 RSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDL 590
RS +QVPLLL + AL KA ESGDTDLV+ V+ H+ + +FF ++ +P+A L
Sbjct: 544 RSGEQVPLLLKMKRSKLALSKAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMALSL 603
Query: 591 FTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEKA 650
+ + + + E LKD + QE+ + S+ + + G R+ ++ A
Sbjct: 604 YRQFCKHQELETLKDLYNQDDNHQELGSFHIRASY--------AAEERIEG-RVAALQTA 654
Query: 651 HSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAA 710
F + K + F +KA E+ +LLR+Q LE F+D S+ DT+ T I+ G ++ A
Sbjct: 655 ADAFYKAK-NEFAAKATEDQMRLLRLQRRLE-DELGGQFLDLSLHDTVTTLILSGQNKRA 712
Query: 711 MKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEA 770
++ +F++ +KR +WLK+ ALA DW+ LE+FSK K+ PIGY PFVE C+ K EA
Sbjct: 713 EQLARDFRIPDKRLWWLKLTALADLEDWEELEKFSKSKKSPIGYLPFVEICMKQHNKYEA 772
Query: 771 LKYIPKLVDPRERAEAYARIGMAKEAADAASQAKD 805
KY + V P ++ +A +G +AAD A + ++
Sbjct: 773 KKYASR-VGPEQKVKALLLVGDVAQAADVAIEHRN 806
>sp|Q9UT38|VPS16_SCHPO Probable vacuolar protein sorting-associated protein 16 homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps16 PE=3 SV=1
Length = 835
Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust.
Identities = 253/847 (29%), Positives = 433/847 (51%), Gaps = 46/847 (5%)
Query: 9 EWQLVYNRYYRKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYA--ESALR 66
EW+L+ + YY+K + + W++ID A AP GG IA+ R +S + Y + +
Sbjct: 11 EWELLQDTYYQKSAIGKAEWEYIDPVDFMFAVAPCGGAIAITRSESNLQSNYKYDQVPMY 70
Query: 67 KLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASM 126
+ +F +G L+ W L+GM W+E++ LI V + G V YN+ E + S+
Sbjct: 71 SICVFCLSGQLLQTLTWDKTS--LVGMGWNENEELIVVSKQGQVRVYNLLGEFHQ--FSL 126
Query: 127 GKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCV------ 180
GK + EC F GV + + + + + F E R +P
Sbjct: 127 GKGVENIGIRECQFSEGGVFALLQNDTFISITGFE-----EPWRKTYASIPFNTLEYYNI 181
Query: 181 ---AVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQKVDDTLSQK---MAVSPNGNFVACF 234
A+I ++ +++++ IL +DE Q + Q +++SPN ++A +
Sbjct: 182 DSWALIPNPFSPDLGMDIVVTVGPHILQIDEQDSQLHSISSLQHVSHISISPNARYLALY 241
Query: 235 THDGRLVVNNTNFSSPVID-----ESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAE 289
G++ V +++FS ++D E++L +Q+AWCG D+V+L ++L +V P
Sbjct: 242 ESVGKVRVISSDFSKELLDLRLPETVAEASL--KQMAWCGNDAVVLVHENLLTLVGPFGG 299
Query: 290 PVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFD 349
V Y Y+ ++ E DGVRIL+ S EFL++VPA E IF IGS +P A L +A
Sbjct: 300 SVPYLYNHTPIVSTEVDGVRILTKDSSEFLRKVPAPLENIFHIGSKTPGAKLVEAFQKMK 359
Query: 350 RRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQ 409
+S A++ L ++ L AV+ C+ A+ +EF I Q+ LL AAS G+ +
Sbjct: 360 LKSVFAEKMLLELKDELHDAVDTCVQASLNEFSIEWQKVLLEAASLGKNSLRMYNHQEYV 419
Query: 410 EMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEV 469
++C+ LRVLNAARDP +GI ++ ++Y L LI R + LA++ S ++ + +
Sbjct: 420 DVCRELRVLNAARDPNVGIYITHEEYLHLGLERLIQRFSCRQLYGLAVQASMWMQIPCDW 479
Query: 470 VIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHE 529
V + WA + I S + P+ +L+ ++ +L K ISY +A A + GR L+ L++ E
Sbjct: 480 VYIQWAQTYIKQS-SEPEEVVLDNIVKRLSSRKYISYEKIARTAYQEGRLILSTKLLDFE 538
Query: 530 PRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACD 589
P + QV LLL++ + AL K E+ D +L+ V+ I Q+ FF ++ P A
Sbjct: 539 PLAKHQVMLLLNMEAYEQALKKVIETMDNNLIIYVVLQIKQQMAIASFFQILNEYPDAVK 598
Query: 590 LFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEK 649
++ +A+ + L DFF Q +A L +++ + +A RI ++
Sbjct: 599 VYVEFAKKNDRKTLHDFFYQDDNKQGIAVLAVEDTLK----------TATVNQRITSLKS 648
Query: 650 AHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRA 709
A + SE+KE + E K + KLL++Q E FV ++++ + I + +
Sbjct: 649 AAKVCSESKELSLEEKCLGDEIKLLQLQQTYE-DQFTGNFVGLTVNEVVVKLIQINQTQR 707
Query: 710 AMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKE-KRPPIGYRPFVEACVDADEKG 768
A K++++F++ EKR+ WLK+ AL RDW +E+++ +R PIG+ PFV + A K
Sbjct: 708 ANKLRSDFQIPEKRFAWLKLRALVAIRDWVQIEQWAGSMRRSPIGFEPFVTEILSAGNKK 767
Query: 769 EALKYIPKL--VDPRERAEAYARIGMAKEAADAASQAKDGELLGRLKLTFAQNAAASSIF 826
EA KYIP+ + +E+ + + ++G K A++ A+++K G +LG L L Q S
Sbjct: 768 EAAKYIPRCTQLTTQEKVDMWVQVGDVKSASEEAAKSKSGSVLGDL-LERVQTMPESRFV 826
Query: 827 DTLRDRL 833
D+L
Sbjct: 827 QNALDQL 833
>sp|Q03308|VPS16_YEAST Vacuolar protein sorting-associated protein 16 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS16 PE=1
SV=2
Length = 798
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 167/639 (26%), Positives = 288/639 (45%), Gaps = 62/639 (9%)
Query: 199 TDAGILMLDEDGVQKVD-----------DTLSQKMAVSPNGNFVACFTHDGRLVVNNTNF 247
D I++LD D V +V D+ K+ +S G D +L + F
Sbjct: 161 NDDSIILLDVDHVYQVSTSNGALLKLITDSSWHKVTISSRGFICLYNMKDNKLQI----F 216
Query: 248 SSP---VIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLV-LIP 303
P +++ + +S P+ I WCG D+V + D + + P V ++Y + L
Sbjct: 217 RDPARILMEHNLDST--PDDICWCGNDTVACSFEDEIKLYGPDGLYVTFWYPFTVTNLRA 274
Query: 304 ECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIR 363
E DG+++++ + FL RV T IF IGST P A+L D+ + + KA E L+
Sbjct: 275 EVDGLKVITTEKIYFLSRVQPQTSNIFRIGSTEPGAMLVDSFSLLEDHAPKAIEILK--N 332
Query: 364 ASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCS--NFQRDRIQEMCKTLRVLNAA 421
L K V CI AA EF+ Q+ LL AASYG+A +F C T+++LN
Sbjct: 333 FVLEKGVLDCIAAAIDEFEPKLQKMLLNAASYGKASLQYKSFDASIFVNACNTIKLLNCF 392
Query: 422 RDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEY------LGMNQEVVIMHWA 475
R GI L++++Y+ ++ +I RL+ + + ++I + LG V WA
Sbjct: 393 R--SFGIFLTVEEYRCISLKGVIDRLLKYHRYYECIQICKLANERFLLGY----VFTEWA 446
Query: 476 CSKITASLAIPDVTLLEILLDKLK---LCKGISYAAVAAHADKSGRRKLAAMLVEHEPRS 532
KI S + D LL+ + +L + + AVA A GR +L+ L E
Sbjct: 447 KDKIKGSPDMEDDELLDKIKSRLSVIDMTDTLQMVAVAKVAYLEGRFQLSRNLALLEKNE 506
Query: 533 SKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFT 592
++ L ++ ++ AL + + + L ++ + +K + ++ L+
Sbjct: 507 EARIEQLYNLDDDSIALKECIKVQNYSLTISLLIALSKKLTNSQLTKLLIIDMFNNPLYL 566
Query: 593 VYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHG--PRIKRIEKA 650
Y R K +L DF+ T + ++A +L ++ E +LH P+IK + +
Sbjct: 567 YYMRMDK-AYLYDFYRQTDRFIDLAHVLLQQGKE---------QQSLHSFLPQIKDL-YS 615
Query: 651 HSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAI-FVDSSISDTIRTCIVLGNHRA 709
SE +T E +E KL Q L + AI F + ++ T+ I G +
Sbjct: 616 QVQNSEVVNNTIEQLQRQE--KLWIYQESL--GKRFAISFTNMTLDQTLSKLIETGQDKQ 671
Query: 710 AMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPF---VEACVDADE 766
++ +FK+SEK+ Y LK L + +D L +F++ ++ PIGY PF +++ D+
Sbjct: 672 VKEIVKKFKISEKKLYHLKCKTLVEAKKFDELLQFAQSRKSPIGYMPFYTYLKSRGHMDK 731
Query: 767 KGEALKYIPKLVDPRERAEAYARIGMAKEAADAASQAKD 805
+ IP L +E+ + Y ++A A + KD
Sbjct: 732 ASPYVNMIPGL-SYQEKKKLYVECRGFRDAIQLAGKEKD 769
>sp|Q11182|VPS16_CAEEL Vacuolar protein sorting-associated protein 16 homolog
OS=Caenorhabditis elegans GN=vps-16 PE=3 SV=2
Length = 852
Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 179/770 (23%), Positives = 332/770 (43%), Gaps = 88/770 (11%)
Query: 91 IGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFW----GNGVV 146
+ M W+ L+ + + G R +I + L E + + + +V EC + G+ +
Sbjct: 93 VFMEWTRAHCLLVLNKAG---RAHIFSSLGEKISEVIFDSQMSDVHECRTFATSRGDSGI 149
Query: 147 CVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILML 206
V + + + + + V +P E+P +P +T +L+ +A LM
Sbjct: 150 AVMDVDGQVSVVNSVSEPVIWSMKPPYSEMPTAWTAFQPHSQLT---HILLIFEAVFLM- 205
Query: 207 DEDGVQKVDDTLSQKMA---VSPNGNFVACFTHDGRLVVNNTNFSSPV----IDES---C 256
G Q + Q A V N +V C D R + S + ID S C
Sbjct: 206 ---GCQG-ESLREQSHAASWVDSNTKYVKCVVDDARSRIAMMTESGKIQIVSIDLSTCFC 261
Query: 257 ESALPPEQIA------WCGMDSVLLYWNDMLVM---VAPQAEP---VQYFYDEPLV---- 300
+ IA W G +V + + L++ V+ + +P VQ + E +
Sbjct: 262 TVEITDHDIAKCINFGWVGNSAVFVQMSPSLIVFVNVSARRKPGDEVQIY--EKMTANAK 319
Query: 301 LIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSP---AALLYDALDHFDRRSAKADE 357
+ E DG+R+ ++ +EF V A++ + A+ + +P A LY A + +
Sbjct: 320 ISIEPDGIRLFESTQVEF---VEAASREKIAVLNRNPNEDGAHLYKAAQEMSQGTGHNSF 376
Query: 358 NLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEM--CKTL 415
+ L KA++ CI A + Q+ LL+AA +G A+ +N D + M K +
Sbjct: 377 AASTVIQDLYKAIDDCISTACDTWQPEEQKLLLKAARFGMAY-TNTTPDTTKLMRAIKEI 435
Query: 416 RVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLG----MNQEVVI 471
RVLN R GIPL+ +Q++++ + +I RLI+ + +A++++++LG N + V+
Sbjct: 436 RVLNELRMVRTGIPLTHRQFRAIGETCVINRLIDMGSYSVAIKVAQWLGGETSENVDRVL 495
Query: 472 MHW---ACSKITASLAIPDVTLLEILLDKL--KLCK--GISYAAVAAHADKSGRRKLAAM 524
+ W + SK++ S D LE L +K+ KL + +S A A A ++ +LA +
Sbjct: 496 LEWVRRSISKVSKSNMKMDQPALEALDEKISAKLLQFPHVSIADAARRAIEAKLPELARL 555
Query: 525 LVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTR 584
+ E + V +LL + + AL KA+ S L++ V+ H+ + I
Sbjct: 556 FIRRETDDANHVAVLLQLNDVSAALQKASASQRPQLIHQVVRHLMNSESRSSYELAISRI 615
Query: 585 PLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPM----ASNGSALH 640
PLA +C + ++ + G L +++ + + + +
Sbjct: 616 PLA--------QCLYQDLVRQEGETRGASSRQMLALLEQASDFERQTLFHFDVAETERNP 667
Query: 641 GPRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRT 700
R+ + +A + + KA EE + L++ QA D S+ DT+
Sbjct: 668 DERLNALRRA-----KDAAKSMGDKAIEEILNDVSAFAPLQIQRGQA---DMSVRDTV-- 717
Query: 701 CIVLGNHRAAM-KVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVE 759
I + + A + ++K + ++++K+ + LA K + L + +KR PIGY PFV+
Sbjct: 718 -IEMAHDTAKVAQLKQQARLTDKQVLLWTIEGLAKKGKMEQLFDLA-QKRSPIGYAPFVK 775
Query: 760 ACVDADEKGEALKYIPKLVDPRERAEAYARIGMAKEAADAASQAKDGELL 809
ACV E KY K+ + A+ + EAA A +D ++L
Sbjct: 776 ACVRYKRLDEIKKYFAKVNGYPDLVAAHLAMKNYVEAAKLAYDRRDRDVL 825
>sp|Q60V75|VPS16_CAEBR Vacuolar protein sorting-associated protein 16 homolog
OS=Caenorhabditis briggsae GN=vps-16 PE=3 SV=1
Length = 858
Score = 123 bits (309), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 187/791 (23%), Positives = 328/791 (41%), Gaps = 103/791 (13%)
Query: 39 ACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSED 98
A F GPIAVI YA + I +G ++ + P + + W+
Sbjct: 58 AACQFSGPIAVI---------YAAPKSWFIWIRTISGRILKRDL---PCTDPVFIDWTRA 105
Query: 99 QTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVV----ECVFW----GNGVVCVTE 150
L+ + ++G A+++ E F +N V EC + G+ + V +
Sbjct: 106 HCLLVLSKNG-------RAQVLSSIGEKVSEVFFDNQVSDVHECRTFATSRGDSGIAVMD 158
Query: 151 ANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDG 210
+ + + + V RP ELP +P +T +L+ +A LM +
Sbjct: 159 VDGQVAVVNSVSEPVIWSMRPPYSELPTAWTAFQPHSQLT---HILLIFEAVFLMGCQGE 215
Query: 211 VQKVDDTLSQKMAVSPNGNFVACFTHDGR----LVVNNTNFSSPVIDES---CESALPPE 263
+V + S + V + +V C D R ++ N ID S C +
Sbjct: 216 SLQVQNHAS--VWVDSSTKYVKCVVDDARSRIAMMTENGKIQIVSIDLSTCFCTVEVTEH 273
Query: 264 QIA------WCGMDSVLLYWNDML---VMVAPQAEP---VQYFYDEPLV---LIPECDGV 308
+I W G V + + L V V+ + +P V++ + + E DG+
Sbjct: 274 EIGKCINFGWVGNSVVFVQMSSSLTVFVNVSARRKPGDEVRFMSIKMTANARISVEPDGI 333
Query: 309 RILSNSSMEFLQRVPASTEQIFAIGST--SPAALLYDALDHFDRRSAKADENLRLIRASL 366
R+ ++ +EF++ AS E+I + + A LY A ++ + + +
Sbjct: 334 RLFESTRVEFVE--AASREKIAVLNRSLNEDGAYLYKAAQEMEQGTGHNSFAASTVIQDM 391
Query: 367 PKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEM--CKTLRVLNAARDP 424
KA++ CI A + Q+ LL+AA +G A+ +N D + M K +RVLN R
Sbjct: 392 YKAIDDCISTACDTWQPEEQKLLLKAARFGMAY-TNTTPDTTKLMRAIKEIRVLNELRMV 450
Query: 425 EIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQ----EVVIMHW---ACS 477
GIPL+ +QY+ + + +I RLI+ + +A++++++LG + V++ W + S
Sbjct: 451 RTGIPLTHRQYRIIGDTCIINRLIDMGSYSVAIKVAQWLGGENCESVDRVLLEWVRRSIS 510
Query: 478 KITASLAIPDVTLLEILLDKL--KLCK--GISYAAVAAHADKSGRRKLAAMLVEHEPRSS 533
K++ S D LE L +K+ KL + +S A A A ++ +LA + + E
Sbjct: 511 KVSRSNMKMDQPALEALDEKISAKLLQFPHVSMADAARRAIEAKLPELARLFIRRETDDE 570
Query: 534 KQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTV 593
V +LL + + AL KA S L++ V+ H+ + I PLA L+
Sbjct: 571 SHVAVLLQLNDVSAALTKAAASQRPQLIHQVVRHLMTSESRSSYELAISRIPLAQCLYQD 630
Query: 594 YAR-------CYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKR 646
R + L L E L + E+ +NP R+
Sbjct: 631 LVRQEGETRGISSRQMLA--LLEQASDFERQTLFHFDVAEIERNP---------SERLNA 679
Query: 647 IEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGN 706
+ +A + + KA EE + L++ QA D S+ DTI I + +
Sbjct: 680 LRRA-----KDAAKSMGDKAIEEILNDVSAFAPLQIQRGQA---DMSVRDTI---IEIAD 728
Query: 707 HRAAM-KVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDAD 765
A + ++K + ++++K+ + LA K + L + +KR PIGY PFV+ACV
Sbjct: 729 DTAKVAQLKQQARLNDKQVLLWTIEGLAKKGKMEQLFDLA-QKRSPIGYAPFVKACVRYK 787
Query: 766 EKGEALKYIPK 776
E KY K
Sbjct: 788 RNEEVNKYFAK 798
>sp|Q9P7N3|VPS41_SCHPO Vacuolar protein sorting-associated protein 41
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps41 PE=3 SV=2
Length = 871
Score = 33.9 bits (76), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 11/125 (8%)
Query: 177 PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQKVDDTLSQK-----MAVSPNGNFV 231
P I+P Y+ S +VL G AG ++L E G DT+ Q +S ++
Sbjct: 122 PLLSVAIDPYYSTRSSRQVLSGGRAGKVVLSEKGWLGNKDTVLQADCGAVYKISWYTTYI 181
Query: 232 ACFTHDGRLVVNNTNFSSPVIDESCESALP-----PEQIAWCGMDSVLLYWNDMLVMVAP 286
A + D + V +T F + LP P Q+ W +++ W+D +++V+
Sbjct: 182 A-WASDLGITVYSTEFGKVLGRLEPPKRLPNDEIFPYQLFWQSESRLVIGWSDQIMIVSI 240
Query: 287 QAEPV 291
Q V
Sbjct: 241 QRSNV 245
>sp|A2CEZ5|ZN326_DANRE DBIRD complex subunit ZNF326 OS=Danio rerio GN=znf326 PE=2 SV=1
Length = 451
Score = 33.5 bits (75), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 658 KEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKV-KTE 716
K HTFE K E+H + L+ +QA F D IS + C+V H+ + K +
Sbjct: 267 KFHTFEDKDIEKHFGSTYHRETLDYIRRQAKFDDKVIS-FLHDCMVNKFHKTVSNLHKLK 325
Query: 717 FKVSEKRWYWLKVFALATKRDW 738
F + W K+ T+ D+
Sbjct: 326 FSCGRSKDEWAKIMEGVTEDDY 347
>sp|O13620|MRD1_SCHPO Multiple RNA-binding domain-containing protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mrd1 PE=3 SV=1
Length = 833
Score = 33.5 bits (75), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 774 IPKLVDPRERAEAYARIGMAKEAADAASQAKDGELLGR-LKLTFAQNA 820
+PK D R A+A A+EAA+A K+ LLGR L L +A NA
Sbjct: 752 VPKKFDRSARGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQYASNA 799
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 300,171,186
Number of Sequences: 539616
Number of extensions: 12315803
Number of successful extensions: 28787
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 28729
Number of HSP's gapped (non-prelim): 28
length of query: 839
length of database: 191,569,459
effective HSP length: 126
effective length of query: 713
effective length of database: 123,577,843
effective search space: 88111002059
effective search space used: 88111002059
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)