Query 003205
Match_columns 839
No_of_seqs 190 out of 364
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 19:03:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003205.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003205hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2280 Vacuolar assembly/sort 100.0 7E-186 2E-190 1525.3 71.5 804 1-822 1-815 (829)
2 PF04841 Vps16_N: Vps16, N-ter 100.0 2.1E-88 4.6E-93 761.6 40.4 398 6-410 1-410 (410)
3 PF04840 Vps16_C: Vps16, C-ter 100.0 1.1E-77 2.3E-82 646.9 36.4 316 504-831 1-318 (319)
4 KOG0272 U4/U6 small nuclear ri 99.9 1.9E-21 4E-26 204.8 17.7 256 33-313 176-459 (459)
5 KOG0271 Notchless-like WD40 re 99.8 3.3E-19 7E-24 185.5 20.6 255 32-312 115-479 (480)
6 KOG0315 G-protein beta subunit 99.8 3.6E-16 7.8E-21 155.0 24.9 254 10-326 25-300 (311)
7 KOG0263 Transcription initiati 99.7 2.8E-16 6.1E-21 177.7 20.5 199 77-315 443-650 (707)
8 KOG0279 G protein beta subunit 99.7 1E-15 2.3E-20 154.2 22.2 235 64-312 36-311 (315)
9 KOG0272 U4/U6 small nuclear ri 99.7 2.6E-16 5.7E-21 166.2 14.3 196 37-257 222-429 (459)
10 KOG0645 WD40 repeat protein [G 99.7 5.2E-15 1.1E-19 148.7 22.3 250 34-314 16-311 (312)
11 KOG0291 WD40-repeat-containing 99.7 2.7E-14 5.8E-19 160.1 25.9 286 5-322 316-620 (893)
12 KOG0271 Notchless-like WD40 re 99.6 2E-15 4.3E-20 157.6 15.2 273 64-346 86-429 (480)
13 KOG0273 Beta-transducin family 99.6 3.1E-14 6.7E-19 152.5 20.9 214 34-268 237-502 (524)
14 KOG0266 WD40 repeat-containing 99.6 4.6E-14 1E-18 162.4 22.9 259 34-342 161-438 (456)
15 cd00200 WD40 WD40 domain, foun 99.6 5.3E-13 1.1E-17 140.4 28.5 252 34-312 11-289 (289)
16 KOG0279 G protein beta subunit 99.6 2.1E-13 4.5E-18 137.8 22.7 198 36-257 67-273 (315)
17 KOG0284 Polyadenylation factor 99.5 6.9E-14 1.5E-18 147.4 14.6 256 34-314 98-380 (464)
18 KOG0291 WD40-repeat-containing 99.5 9.9E-13 2.2E-17 147.8 22.9 231 36-319 311-555 (893)
19 KOG0286 G-protein beta subunit 99.5 2.8E-13 6.1E-18 137.5 16.7 199 34-244 99-343 (343)
20 KOG0266 WD40 repeat-containing 99.5 1.6E-12 3.5E-17 149.6 23.4 201 32-257 203-420 (456)
21 KOG0306 WD40-repeat-containing 99.5 5.8E-13 1.3E-17 149.5 18.7 244 64-346 392-654 (888)
22 PLN00181 protein SPA1-RELATED; 99.5 3.9E-12 8.5E-17 156.8 28.1 219 64-312 553-791 (793)
23 KOG0318 WD40 repeat stress pro 99.5 1.9E-11 4.1E-16 132.8 27.1 279 35-342 193-503 (603)
24 KOG0273 Beta-transducin family 99.5 3.3E-12 7.2E-17 137.1 20.5 240 88-341 236-508 (524)
25 KOG0265 U5 snRNP-specific prot 99.5 5.3E-12 1.2E-16 128.9 20.7 249 32-306 47-329 (338)
26 KOG0640 mRNA cleavage stimulat 99.5 3.4E-12 7.4E-17 130.3 18.8 255 37-314 117-426 (430)
27 KOG0275 Conserved WD40 repeat- 99.5 1.2E-12 2.7E-17 133.9 15.5 252 37-312 218-507 (508)
28 KOG0286 G-protein beta subunit 99.5 4.1E-11 8.8E-16 122.0 26.2 252 34-312 57-343 (343)
29 cd00200 WD40 WD40 domain, foun 99.4 1.6E-11 3.4E-16 129.1 24.3 208 36-270 55-272 (289)
30 KOG0293 WD40 repeat-containing 99.4 9.4E-12 2E-16 131.5 22.0 277 13-314 202-513 (519)
31 KOG0263 Transcription initiati 99.4 3.7E-12 8E-17 144.7 18.1 192 34-252 453-653 (707)
32 KOG0318 WD40 repeat stress pro 99.4 5.7E-11 1.2E-15 129.2 25.1 275 34-333 61-370 (603)
33 KOG0319 WD40-repeat-containing 99.4 6.4E-12 1.4E-16 141.3 18.2 268 64-344 301-607 (775)
34 KOG0315 G-protein beta subunit 99.4 2.6E-11 5.7E-16 120.8 20.3 246 63-346 17-278 (311)
35 KOG0973 Histone transcription 99.4 2E-11 4.2E-16 143.3 22.1 233 32-285 69-353 (942)
36 KOG0295 WD40 repeat-containing 99.4 1.8E-11 3.8E-16 127.9 18.2 198 35-251 111-369 (406)
37 PLN00181 protein SPA1-RELATED; 99.4 1.6E-10 3.5E-15 142.5 28.0 228 35-314 486-738 (793)
38 KOG1446 Histone H3 (Lys4) meth 99.3 1.7E-10 3.8E-15 119.0 23.1 262 34-346 16-295 (311)
39 KOG0319 WD40-repeat-containing 99.3 2.4E-11 5.1E-16 136.9 18.1 182 64-258 385-589 (775)
40 KOG0295 WD40 repeat-containing 99.3 2.2E-11 4.7E-16 127.3 16.5 236 76-326 99-376 (406)
41 KOG0276 Vesicle coat complex C 99.3 1.1E-10 2.3E-15 129.2 22.0 230 64-310 75-325 (794)
42 PTZ00421 coronin; Provisional 99.3 2.4E-10 5.2E-15 131.8 26.2 194 80-319 70-295 (493)
43 PTZ00421 coronin; Provisional 99.3 2.7E-10 5.8E-15 131.4 26.5 210 34-268 77-312 (493)
44 KOG0301 Phospholipase A2-activ 99.3 1.1E-10 2.3E-15 130.9 20.7 234 64-315 33-289 (745)
45 KOG0281 Beta-TrCP (transducin 99.3 2.2E-11 4.8E-16 126.0 13.9 193 45-257 199-399 (499)
46 PTZ00420 coronin; Provisional 99.3 1.3E-09 2.7E-14 126.8 28.6 186 40-246 34-248 (568)
47 KOG0277 Peroxisomal targeting 99.3 5.4E-11 1.2E-15 119.0 14.6 231 19-278 50-307 (311)
48 KOG0288 WD40 repeat protein Ti 99.3 1.6E-11 3.4E-16 130.1 10.7 245 64-347 195-452 (459)
49 KOG0296 Angio-associated migra 99.3 3.8E-10 8.3E-15 118.2 20.7 285 33-346 65-388 (399)
50 KOG2096 WD40 repeat protein [G 99.3 1.9E-09 4.1E-14 111.0 25.3 287 7-314 63-402 (420)
51 KOG0292 Vesicle coat complex C 99.3 8.7E-11 1.9E-15 134.1 17.0 237 34-322 11-288 (1202)
52 KOG0645 WD40 repeat protein [G 99.3 7E-10 1.5E-14 112.2 20.9 187 34-246 63-261 (312)
53 PTZ00420 coronin; Provisional 99.2 1.2E-09 2.5E-14 127.1 25.5 189 34-246 76-293 (568)
54 KOG0316 Conserved WD40 repeat- 99.2 1.8E-09 3.9E-14 107.0 21.9 195 36-257 21-224 (307)
55 KOG0278 Serine/threonine kinas 99.2 1.3E-10 2.7E-15 116.0 13.1 188 37-251 105-302 (334)
56 KOG0310 Conserved WD40 repeat- 99.2 5.5E-10 1.2E-14 121.0 18.8 187 33-243 111-306 (487)
57 KOG0285 Pleiotropic regulator 99.2 1.8E-09 3.8E-14 112.7 21.4 184 34-244 153-346 (460)
58 KOG0293 WD40 repeat-containing 99.2 5E-10 1.1E-14 118.6 16.7 249 81-346 220-503 (519)
59 KOG0274 Cdc4 and related F-box 99.2 2E-09 4.4E-14 124.6 23.2 241 64-322 226-490 (537)
60 KOG1446 Histone H3 (Lys4) meth 99.2 2.6E-09 5.6E-14 110.5 21.3 202 38-253 52-269 (311)
61 KOG0289 mRNA splicing factor [ 99.2 1.9E-09 4.2E-14 115.1 20.7 237 64-311 239-503 (506)
62 KOG1407 WD40 repeat protein [F 99.2 4E-09 8.6E-14 106.2 21.4 191 64-271 85-284 (313)
63 KOG0268 Sof1-like rRNA process 99.2 4.4E-10 9.5E-15 117.5 14.7 261 45-322 68-353 (433)
64 KOG0643 Translation initiation 99.2 2.1E-09 4.5E-14 108.5 18.8 255 37-318 15-321 (327)
65 KOG0299 U3 snoRNP-associated p 99.2 1.2E-09 2.6E-14 117.5 18.0 186 34-246 204-410 (479)
66 TIGR03866 PQQ_ABC_repeats PQQ- 99.1 2.5E-08 5.5E-13 107.3 28.2 244 64-324 9-289 (300)
67 KOG0292 Vesicle coat complex C 99.1 5.7E-09 1.2E-13 119.6 23.3 201 31-254 50-288 (1202)
68 KOG0313 Microtubule binding pr 99.1 4.8E-09 1E-13 110.5 20.9 239 63-314 122-418 (423)
69 KOG0973 Histone transcription 99.1 3.4E-09 7.4E-14 124.8 21.6 243 27-314 7-312 (942)
70 KOG0288 WD40 repeat protein Ti 99.1 9.9E-10 2.1E-14 116.7 14.9 187 63-269 238-441 (459)
71 KOG0278 Serine/threonine kinas 99.1 9.4E-10 2E-14 109.8 13.8 225 74-314 48-297 (334)
72 KOG0282 mRNA splicing factor [ 99.1 1.1E-09 2.4E-14 118.5 15.3 236 77-327 206-475 (503)
73 KOG1274 WD40 repeat protein [G 99.1 3.3E-09 7.2E-14 122.5 20.1 195 33-246 55-262 (933)
74 KOG2096 WD40 repeat protein [G 99.1 1.8E-09 4E-14 111.1 15.4 211 77-314 78-308 (420)
75 KOG0275 Conserved WD40 repeat- 99.1 1.2E-09 2.6E-14 112.3 13.8 188 35-244 309-507 (508)
76 KOG0301 Phospholipase A2-activ 99.1 2.2E-09 4.7E-14 120.5 17.1 250 78-346 7-279 (745)
77 KOG0284 Polyadenylation factor 99.1 1.3E-09 2.9E-14 115.5 13.5 213 32-268 138-359 (464)
78 KOG2055 WD40 repeat protein [G 99.1 1.6E-09 3.4E-14 116.6 14.1 186 35-245 306-511 (514)
79 KOG0772 Uncharacterized conser 99.1 2.4E-09 5.2E-14 116.4 15.6 215 34-279 216-467 (641)
80 KOG2445 Nuclear pore complex c 99.1 3.4E-08 7.3E-13 101.7 22.7 246 36-314 17-318 (361)
81 KOG1538 Uncharacterized conser 99.1 5.1E-09 1.1E-13 116.4 18.0 198 34-250 14-297 (1081)
82 KOG0316 Conserved WD40 repeat- 99.0 4.3E-09 9.3E-14 104.4 15.2 210 77-331 9-230 (307)
83 KOG0265 U5 snRNP-specific prot 99.0 7.9E-09 1.7E-13 106.0 17.4 254 77-344 39-326 (338)
84 KOG0310 Conserved WD40 repeat- 99.0 7.3E-09 1.6E-13 112.4 18.2 222 33-284 69-305 (487)
85 KOG0276 Vesicle coat complex C 99.0 4.3E-09 9.3E-14 116.7 16.6 238 64-340 33-283 (794)
86 KOG0306 WD40-repeat-containing 99.0 4.8E-09 1E-13 118.6 16.6 191 33-246 455-664 (888)
87 KOG0305 Anaphase promoting com 99.0 1.9E-08 4.1E-13 112.9 21.4 253 32-314 177-461 (484)
88 KOG0772 Uncharacterized conser 99.0 8.9E-09 1.9E-13 112.0 17.8 181 62-254 185-403 (641)
89 KOG0294 WD40 repeat-containing 99.0 2.6E-08 5.5E-13 102.9 19.8 187 63-266 60-256 (362)
90 KOG1539 WD repeat protein [Gen 99.0 6E-09 1.3E-13 119.2 16.5 211 7-245 408-647 (910)
91 KOG0641 WD40 repeat protein [G 99.0 2.5E-07 5.5E-12 91.2 25.3 206 33-257 33-272 (350)
92 KOG0282 mRNA splicing factor [ 99.0 9.2E-09 2E-13 111.5 16.7 206 36-268 262-483 (503)
93 KOG1332 Vesicle coat complex C 99.0 5.4E-08 1.2E-12 97.3 19.8 186 42-246 21-241 (299)
94 KOG1273 WD40 repeat protein [G 99.0 3.5E-08 7.5E-13 101.8 18.8 256 35-317 26-325 (405)
95 KOG2055 WD40 repeat protein [G 99.0 2.5E-08 5.4E-13 107.5 18.3 227 87-347 213-456 (514)
96 KOG0285 Pleiotropic regulator 99.0 6E-09 1.3E-13 108.9 12.7 162 80-254 146-315 (460)
97 KOG1274 WD40 repeat protein [G 99.0 6.3E-08 1.4E-12 112.2 22.0 222 88-322 14-273 (933)
98 KOG0296 Angio-associated migra 98.9 1.5E-07 3.3E-12 99.0 22.9 252 34-312 108-396 (399)
99 KOG0771 Prolactin regulatory e 98.9 9.3E-09 2E-13 110.1 13.9 213 8-246 119-354 (398)
100 KOG0289 mRNA splicing factor [ 98.9 5.3E-08 1.1E-12 104.3 19.2 217 34-276 263-492 (506)
101 KOG0281 Beta-TrCP (transducin 98.9 1.1E-08 2.3E-13 106.4 13.2 181 40-244 234-426 (499)
102 KOG0647 mRNA export protein (c 98.9 1.1E-07 2.4E-12 97.8 20.0 200 32-257 72-292 (347)
103 PF09787 Golgin_A5: Golgin sub 98.9 3.3E-08 7.2E-13 114.9 18.6 246 540-795 158-467 (511)
104 KOG0283 WD40 repeat-containing 98.9 3.6E-08 7.8E-13 113.6 17.8 169 16-211 249-483 (712)
105 TIGR03866 PQQ_ABC_repeats PQQ- 98.9 1.8E-07 3.9E-12 100.6 22.0 209 35-266 75-297 (300)
106 KOG0283 WD40 repeat-containing 98.9 5.2E-08 1.1E-12 112.3 18.3 222 81-317 262-579 (712)
107 PRK01742 tolB translocation pr 98.9 1.4E-07 3.1E-12 108.2 22.0 204 35-268 206-424 (429)
108 KOG2048 WD40 repeat protein [G 98.9 5.6E-07 1.2E-11 101.4 25.3 199 34-257 27-244 (691)
109 KOG0646 WD40 repeat protein [G 98.9 1.9E-07 4E-12 101.2 20.4 193 37-255 86-316 (476)
110 KOG1036 Mitotic spindle checkp 98.9 1.4E-07 2.9E-12 97.5 18.4 193 63-270 72-285 (323)
111 KOG1332 Vesicle coat complex C 98.9 8E-08 1.7E-12 96.1 15.8 194 33-248 57-288 (299)
112 PRK03629 tolB translocation pr 98.9 1.6E-07 3.5E-12 107.6 21.0 207 35-268 201-426 (429)
113 KOG0268 Sof1-like rRNA process 98.8 1.6E-08 3.5E-13 106.0 11.2 171 65-251 166-350 (433)
114 KOG0646 WD40 repeat protein [G 98.8 1.1E-07 2.3E-12 103.0 17.4 242 63-324 58-317 (476)
115 KOG0307 Vesicle coat complex C 98.8 5.9E-06 1.3E-10 98.5 32.8 210 64-284 88-324 (1049)
116 KOG1407 WD40 repeat protein [F 98.8 3.2E-07 7E-12 92.7 18.0 237 35-324 23-271 (313)
117 PRK05137 tolB translocation pr 98.8 4.8E-07 1E-11 104.0 21.7 188 35-246 204-412 (435)
118 PRK04922 tolB translocation pr 98.8 3.7E-07 8.1E-12 104.9 20.5 206 36-267 207-430 (433)
119 PRK02889 tolB translocation pr 98.8 4.8E-07 1E-11 103.7 21.3 187 36-246 199-403 (427)
120 PRK01742 tolB translocation pr 98.8 7E-07 1.5E-11 102.4 22.5 236 44-334 168-423 (429)
121 KOG0643 Translation initiation 98.8 2.5E-07 5.5E-12 93.7 15.8 196 32-251 93-320 (327)
122 KOG0647 mRNA export protein (c 98.7 5.8E-07 1.3E-11 92.6 18.3 264 32-341 27-308 (347)
123 KOG1538 Uncharacterized conser 98.7 2E-07 4.4E-12 104.0 16.0 229 89-333 14-270 (1081)
124 PRK03629 tolB translocation pr 98.7 1.3E-06 2.9E-11 100.0 23.6 165 65-245 178-362 (429)
125 KOG0294 WD40 repeat-containing 98.7 2.5E-07 5.5E-12 95.7 15.6 175 63-257 104-297 (362)
126 KOG0270 WD40 repeat-containing 98.7 4.4E-07 9.6E-12 97.8 17.6 177 44-249 192-407 (463)
127 KOG2106 Uncharacterized conser 98.7 3.9E-06 8.5E-11 91.7 24.3 238 10-270 227-502 (626)
128 KOG0277 Peroxisomal targeting 98.7 2.5E-07 5.3E-12 93.2 13.8 171 63-246 124-309 (311)
129 PRK05137 tolB translocation pr 98.7 2.2E-06 4.8E-11 98.5 23.9 167 65-246 181-366 (435)
130 KOG0264 Nucleosome remodeling 98.7 7.3E-07 1.6E-11 96.5 18.1 173 63-246 144-347 (422)
131 KOG0269 WD40 repeat-containing 98.7 9.4E-08 2E-12 108.9 11.7 196 64-275 108-325 (839)
132 KOG1036 Mitotic spindle checkp 98.7 1.6E-06 3.5E-11 89.8 19.4 265 35-347 16-295 (323)
133 KOG4328 WD40 protein [Function 98.7 1.8E-06 3.8E-11 93.5 20.5 214 63-288 207-451 (498)
134 KOG1539 WD repeat protein [Gen 98.7 1.6E-06 3.5E-11 99.8 20.5 215 64-314 420-648 (910)
135 KOG0274 Cdc4 and related F-box 98.6 7.4E-07 1.6E-11 103.5 17.8 248 67-333 188-461 (537)
136 KOG0640 mRNA cleavage stimulat 98.6 9.8E-07 2.1E-11 91.0 16.2 189 36-244 220-424 (430)
137 KOG0308 Conserved WD40 repeat- 98.6 2.6E-07 5.6E-12 103.5 13.0 184 64-257 45-254 (735)
138 KOG0313 Microtubule binding pr 98.6 1.1E-06 2.3E-11 93.1 16.8 239 88-338 106-401 (423)
139 KOG0305 Anaphase promoting com 98.6 5.5E-07 1.2E-11 101.3 15.1 239 91-344 181-449 (484)
140 PF04053 Coatomer_WDAD: Coatom 98.6 6.8E-05 1.5E-09 85.4 32.0 159 89-270 34-207 (443)
141 PRK04043 tolB translocation pr 98.6 9.6E-06 2.1E-10 92.4 24.5 199 21-246 169-400 (419)
142 KOG1063 RNA polymerase II elon 98.6 1E-06 2.3E-11 99.4 15.8 200 32-246 525-763 (764)
143 PRK04922 tolB translocation pr 98.6 5.8E-06 1.3E-10 95.0 22.0 167 65-246 183-368 (433)
144 PRK02889 tolB translocation pr 98.6 1.3E-05 2.9E-10 91.8 24.9 166 65-246 175-360 (427)
145 KOG2048 WD40 repeat protein [G 98.6 1.8E-05 3.9E-10 89.6 24.7 192 32-246 69-275 (691)
146 KOG1034 Transcriptional repres 98.5 6.3E-07 1.4E-11 93.3 12.1 91 64-161 113-211 (385)
147 PRK04792 tolB translocation pr 98.5 5.8E-06 1.3E-10 95.3 21.7 207 36-268 221-445 (448)
148 KOG0639 Transducin-like enhanc 98.5 1.9E-06 4.1E-11 93.9 15.8 230 88-325 420-674 (705)
149 KOG1445 Tumor-specific antigen 98.5 2.5E-06 5.4E-11 95.1 16.7 143 88-275 628-781 (1012)
150 TIGR02800 propeller_TolB tol-p 98.5 6.6E-06 1.4E-10 94.0 21.2 188 35-246 192-397 (417)
151 KOG2106 Uncharacterized conser 98.5 7.1E-06 1.5E-10 89.8 19.6 185 65-274 348-541 (626)
152 KOG0300 WD40 repeat-containing 98.5 4.5E-06 9.7E-11 86.3 17.1 163 77-253 264-434 (481)
153 KOG1524 WD40 repeat-containing 98.5 1.3E-06 2.8E-11 95.9 13.9 160 63-241 82-281 (737)
154 KOG2111 Uncharacterized conser 98.5 4.4E-05 9.4E-10 79.7 24.2 158 65-245 74-255 (346)
155 PRK00178 tolB translocation pr 98.5 9.8E-06 2.1E-10 93.1 21.5 187 36-246 202-406 (430)
156 KOG0267 Microtubule severing p 98.5 2.7E-07 5.9E-12 104.4 7.6 170 64-246 48-226 (825)
157 KOG1272 WD40-repeat-containing 98.5 9.3E-07 2E-11 95.7 11.2 222 32-284 129-359 (545)
158 KOG0300 WD40 repeat-containing 98.4 6.9E-06 1.5E-10 84.9 16.1 194 63-268 167-407 (481)
159 KOG1240 Protein kinase contain 98.4 7.7E-06 1.7E-10 97.8 18.3 187 71-268 1034-1247(1431)
160 KOG4677 Golgi integral membran 98.4 6.8E-06 1.5E-10 88.5 16.0 271 538-818 207-512 (554)
161 KOG2110 Uncharacterized conser 98.4 3.4E-05 7.3E-10 81.9 20.8 211 66-317 26-251 (391)
162 KOG0641 WD40 repeat protein [G 98.4 6.4E-05 1.4E-09 74.6 21.2 192 33-244 90-301 (350)
163 KOG4378 Nuclear protein COP1 [ 98.4 7.5E-06 1.6E-10 89.3 15.9 197 64-271 99-305 (673)
164 KOG0642 Cell-cycle nuclear pro 98.4 2.7E-06 5.9E-11 94.3 12.8 207 32-257 344-572 (577)
165 KOG2919 Guanine nucleotide-bin 98.4 9.3E-06 2E-10 84.5 15.8 264 90-356 52-370 (406)
166 KOG0303 Actin-binding protein 98.4 1.2E-05 2.7E-10 85.6 16.9 188 79-312 75-292 (472)
167 KOG0264 Nucleosome remodeling 98.4 7.4E-06 1.6E-10 88.8 14.8 169 63-245 197-403 (422)
168 PRK11028 6-phosphogluconolacto 98.3 0.00024 5.1E-09 78.6 27.5 187 36-246 38-258 (330)
169 PRK01029 tolB translocation pr 98.3 4.4E-05 9.6E-10 87.4 22.1 188 36-246 188-403 (428)
170 TIGR02800 propeller_TolB tol-p 98.3 6.2E-05 1.3E-09 85.9 23.2 167 64-246 168-354 (417)
171 COG2319 FOG: WD40 repeat [Gene 98.3 0.00013 2.8E-09 80.5 25.1 256 41-325 119-411 (466)
172 KOG1408 WD40 repeat protein [F 98.3 1.8E-05 4E-10 89.6 17.4 187 35-244 462-669 (1080)
173 KOG1523 Actin-related protein 98.3 2.3E-05 5E-10 81.7 16.6 219 35-275 13-265 (361)
174 KOG1920 IkappaB kinase complex 98.3 0.0033 7.2E-08 76.2 36.5 322 443-816 683-1065(1265)
175 KOG2445 Nuclear pore complex c 98.3 4.2E-05 9E-10 79.4 18.0 200 32-249 59-321 (361)
176 KOG4497 Uncharacterized conser 98.3 3.8E-06 8.1E-11 87.5 10.3 211 37-313 13-239 (447)
177 PF08662 eIF2A: Eukaryotic tra 98.3 3E-05 6.5E-10 78.9 16.7 151 90-255 8-187 (194)
178 KOG1445 Tumor-specific antigen 98.3 6.3E-06 1.4E-10 92.0 11.8 181 18-210 625-845 (1012)
179 PF15492 Nbas_N: Neuroblastoma 98.2 7.1E-05 1.5E-09 77.6 18.5 182 36-245 47-258 (282)
180 KOG0302 Ribosome Assembly prot 98.2 3.4E-05 7.4E-10 81.9 16.4 160 76-247 202-379 (440)
181 KOG2321 WD40 repeat protein [G 98.2 0.00013 2.9E-09 81.3 21.5 211 34-270 53-282 (703)
182 KOG0307 Vesicle coat complex C 98.2 7.4E-06 1.6E-10 97.7 12.5 261 36-337 10-307 (1049)
183 KOG2110 Uncharacterized conser 98.2 0.00012 2.6E-09 77.8 20.1 167 65-246 67-248 (391)
184 KOG0650 WD40 repeat nucleolar 98.2 0.00018 3.8E-09 80.6 22.0 254 35-312 403-733 (733)
185 KOG0771 Prolactin regulatory e 98.2 1.1E-05 2.4E-10 86.9 12.0 146 91-246 148-311 (398)
186 KOG1408 WD40 repeat protein [F 98.2 5.3E-05 1.1E-09 86.0 17.6 285 36-337 82-512 (1080)
187 KOG0299 U3 snoRNP-associated p 98.2 8.7E-05 1.9E-09 80.8 18.4 248 78-341 135-440 (479)
188 PRK11028 6-phosphogluconolacto 98.2 8.8E-05 1.9E-09 82.0 19.4 191 35-246 82-304 (330)
189 PRK00178 tolB translocation pr 98.2 0.00026 5.7E-09 81.3 23.7 165 66-246 179-363 (430)
190 KOG4378 Nuclear protein COP1 [ 98.2 3.1E-05 6.7E-10 84.6 14.6 169 63-246 54-239 (673)
191 PF08662 eIF2A: Eukaryotic tra 98.2 3.8E-05 8.2E-10 78.1 14.5 115 16-151 34-162 (194)
192 KOG2394 WD40 protein DMR-N9 [G 98.1 0.00011 2.3E-09 81.5 18.2 215 35-253 103-369 (636)
193 PRK04792 tolB translocation pr 98.1 0.0003 6.6E-09 81.1 23.2 164 66-245 198-381 (448)
194 KOG0270 WD40 repeat-containing 98.1 6.1E-05 1.3E-09 81.7 15.8 170 62-246 262-449 (463)
195 KOG0269 WD40 repeat-containing 98.1 8.7E-05 1.9E-09 85.3 17.7 179 90-279 90-295 (839)
196 KOG0639 Transducin-like enhanc 98.1 3.7E-05 8.1E-10 84.1 12.5 190 37-251 470-668 (705)
197 KOG1063 RNA polymerase II elon 98.1 9.6E-05 2.1E-09 84.0 16.1 237 64-316 32-299 (764)
198 KOG0321 WD40 repeat-containing 98.0 0.00014 3.1E-09 82.0 17.2 193 35-246 103-347 (720)
199 KOG2139 WD40 repeat protein [G 98.0 0.0002 4.4E-09 75.8 17.2 194 28-244 96-307 (445)
200 KOG0267 Microtubule severing p 98.0 1.5E-05 3.2E-10 90.7 9.1 195 101-309 43-262 (825)
201 KOG1963 WD40 repeat protein [G 98.0 0.0012 2.7E-08 77.3 24.9 258 35-316 208-540 (792)
202 KOG2919 Guanine nucleotide-bin 98.0 0.00018 4E-09 75.1 16.1 218 37-278 163-402 (406)
203 KOG0308 Conserved WD40 repeat- 98.0 0.00013 2.9E-09 82.4 16.0 166 64-244 93-283 (735)
204 KOG1188 WD40 repeat protein [G 98.0 0.0002 4.3E-09 75.5 16.3 170 64-245 48-241 (376)
205 PF04762 IKI3: IKI3 family; I 98.0 0.00061 1.3E-08 84.6 23.6 215 31-278 255-505 (928)
206 KOG0302 Ribosome Assembly prot 98.0 0.00015 3.3E-09 77.2 14.5 127 186-313 264-437 (440)
207 KOG1963 WD40 repeat protein [G 97.9 0.00082 1.8E-08 78.7 21.6 255 37-323 21-331 (792)
208 KOG4283 Transcription-coupled 97.9 0.00017 3.7E-09 74.4 14.0 178 64-246 166-365 (397)
209 TIGR02658 TTQ_MADH_Hv methylam 97.9 0.0036 7.9E-08 69.0 25.2 246 39-323 52-339 (352)
210 COG2319 FOG: WD40 repeat [Gene 97.9 0.001 2.3E-08 73.2 21.0 189 34-248 67-273 (466)
211 KOG4328 WD40 protein [Function 97.9 0.00038 8.3E-09 75.9 16.4 214 77-325 178-414 (498)
212 KOG1034 Transcriptional repres 97.9 0.00026 5.6E-09 74.3 14.4 138 64-209 62-211 (385)
213 KOG2066 Vacuolar assembly/sort 97.9 0.11 2.4E-06 61.1 40.2 180 88-287 40-233 (846)
214 KOG1009 Chromatin assembly com 97.9 0.00021 4.6E-09 76.8 13.9 166 78-250 5-199 (434)
215 KOG2114 Vacuolar assembly/sort 97.9 0.13 2.8E-06 60.9 47.8 248 9-317 5-276 (933)
216 KOG1009 Chromatin assembly com 97.8 0.00043 9.4E-09 74.5 15.7 193 32-244 65-370 (434)
217 KOG1240 Protein kinase contain 97.8 0.0021 4.5E-08 77.8 22.5 248 36-316 1053-1336(1431)
218 KOG1587 Cytoplasmic dynein int 97.8 0.0033 7.1E-08 73.2 23.6 241 66-314 222-516 (555)
219 KOG0649 WD40 repeat protein [G 97.8 0.0012 2.6E-08 66.7 17.1 167 90-268 13-211 (325)
220 KOG1517 Guanine nucleotide bin 97.8 0.0012 2.5E-08 78.6 19.4 195 34-246 1066-1287(1387)
221 PRK04043 tolB translocation pr 97.8 0.0043 9.3E-08 70.8 23.9 156 65-237 168-339 (419)
222 PRK01029 tolB translocation pr 97.8 0.0014 3E-08 75.2 19.6 171 65-248 164-361 (428)
223 KOG0321 WD40 repeat-containing 97.8 0.0007 1.5E-08 76.6 16.3 243 64-314 72-391 (720)
224 KOG4283 Transcription-coupled 97.8 0.0021 4.5E-08 66.6 18.4 158 62-254 120-285 (397)
225 KOG0642 Cell-cycle nuclear pro 97.7 0.0002 4.2E-09 80.0 11.4 117 88-212 295-429 (577)
226 PF00400 WD40: WD domain, G-be 97.5 0.00018 4E-09 52.3 5.2 38 75-114 1-39 (39)
227 PF04762 IKI3: IKI3 family; I 97.5 0.024 5.2E-07 70.8 26.8 171 65-246 96-333 (928)
228 KOG4227 WD40 repeat protein [G 97.5 0.0067 1.4E-07 65.0 18.3 175 36-229 60-257 (609)
229 KOG0644 Uncharacterized conser 97.5 0.00032 6.8E-09 81.3 9.1 171 63-246 251-468 (1113)
230 KOG2139 WD40 repeat protein [G 97.5 0.0051 1.1E-07 65.5 17.3 188 34-271 197-396 (445)
231 KOG0303 Actin-binding protein 97.5 0.0012 2.6E-08 70.9 12.7 135 62-210 150-295 (472)
232 PF04840 Vps16_C: Vps16, C-ter 97.5 0.0043 9.4E-08 67.8 17.4 226 328-568 73-301 (319)
233 KOG0290 Conserved WD40 repeat- 97.5 0.0028 6E-08 65.7 14.4 243 65-320 72-363 (364)
234 PF10282 Lactonase: Lactonase, 97.5 0.015 3.3E-07 64.7 21.9 191 36-246 90-322 (345)
235 KOG1524 WD40 repeat-containing 97.4 0.0019 4E-08 71.8 13.5 184 98-298 75-269 (737)
236 KOG1354 Serine/threonine prote 97.4 0.0055 1.2E-07 64.9 16.3 193 88-285 85-357 (433)
237 KOG0290 Conserved WD40 repeat- 97.4 0.007 1.5E-07 62.8 16.2 171 61-282 168-360 (364)
238 KOG4497 Uncharacterized conser 97.4 0.00052 1.1E-08 71.9 8.0 158 64-244 69-238 (447)
239 PLN02919 haloacid dehalogenase 97.3 0.064 1.4E-06 68.2 27.8 193 37-246 572-833 (1057)
240 KOG2394 WD40 protein DMR-N9 [G 97.3 0.0011 2.3E-08 73.8 9.8 91 34-142 292-384 (636)
241 KOG1587 Cytoplasmic dynein int 97.3 0.013 2.9E-07 68.2 18.9 183 61-244 260-470 (555)
242 KOG2111 Uncharacterized conser 97.3 0.025 5.5E-07 59.6 18.8 205 37-271 10-238 (346)
243 KOG1273 WD40 repeat protein [G 97.2 0.0044 9.6E-08 64.9 13.0 92 186-279 30-129 (405)
244 PLN02919 haloacid dehalogenase 97.2 0.037 8E-07 70.3 24.0 197 36-249 627-891 (1057)
245 COG4946 Uncharacterized protei 97.2 0.058 1.3E-06 59.6 21.6 188 36-249 270-480 (668)
246 KOG2315 Predicted translation 97.1 0.059 1.3E-06 60.8 20.6 208 37-268 170-409 (566)
247 KOG1007 WD repeat protein TSSC 97.0 0.026 5.7E-07 58.6 16.2 178 65-246 39-245 (370)
248 KOG1272 WD40-repeat-containing 97.0 0.0026 5.7E-08 69.6 9.4 162 64-244 189-360 (545)
249 KOG0322 G-protein beta subunit 97.0 0.016 3.5E-07 59.5 14.3 69 278-346 244-313 (323)
250 KOG0649 WD40 repeat protein [G 97.0 0.029 6.3E-07 57.0 15.8 168 64-243 134-313 (325)
251 PLN03218 maturation of RBCL 1; 97.0 0.86 1.9E-05 58.0 32.6 109 695-803 618-745 (1060)
252 KOG0974 WD-repeat protein WDR6 96.9 0.0077 1.7E-07 72.1 13.0 133 63-211 152-290 (967)
253 KOG0322 G-protein beta subunit 96.9 0.0011 2.3E-08 67.8 5.1 68 34-115 253-322 (323)
254 PLN03081 pentatricopeptide (PP 96.9 1.6 3.5E-05 53.5 34.0 408 368-838 143-606 (697)
255 KOG1188 WD40 repeat protein [G 96.9 0.03 6.5E-07 59.5 15.2 160 100-271 42-223 (376)
256 KOG2315 Predicted translation 96.8 0.18 3.9E-06 57.0 21.7 110 201-314 251-390 (566)
257 COG2706 3-carboxymuconate cycl 96.8 0.28 6E-06 53.0 22.0 195 36-246 92-321 (346)
258 PF02239 Cytochrom_D1: Cytochr 96.8 0.048 1E-06 61.2 17.5 240 35-323 80-356 (369)
259 KOG1310 WD40 repeat protein [G 96.8 0.0037 8E-08 69.7 8.2 150 78-235 43-205 (758)
260 PLN03077 Protein ECB2; Provisi 96.7 2.5 5.3E-05 53.3 34.2 86 439-529 255-349 (857)
261 PF00400 WD40: WD domain, G-be 96.6 0.0036 7.8E-08 45.3 4.6 32 213-244 8-39 (39)
262 KOG3914 WD repeat protein WDR4 96.6 0.094 2E-06 57.0 17.1 159 33-256 63-233 (390)
263 COG4946 Uncharacterized protei 96.6 0.14 3E-06 56.8 18.2 166 43-236 331-508 (668)
264 PLN03081 pentatricopeptide (PP 96.6 3 6.4E-05 51.2 34.5 142 693-838 393-559 (697)
265 KOG1517 Guanine nucleotide bin 96.6 0.039 8.4E-07 66.3 15.0 171 65-246 1186-1381(1387)
266 KOG2041 WD40 repeat protein [G 96.5 2.4 5.2E-05 49.5 39.2 107 519-628 842-954 (1189)
267 COG5354 Uncharacterized protei 96.5 0.54 1.2E-05 52.8 22.1 188 34-235 73-293 (561)
268 COG2706 3-carboxymuconate cycl 96.4 1.1 2.5E-05 48.4 23.3 195 64-268 62-299 (346)
269 KOG1007 WD repeat protein TSSC 96.4 0.058 1.3E-06 56.2 13.0 147 88-243 124-286 (370)
270 PF02239 Cytochrom_D1: Cytochr 96.3 0.2 4.3E-06 56.3 18.6 263 64-339 14-328 (369)
271 KOG1920 IkappaB kinase complex 96.3 0.97 2.1E-05 55.9 24.6 94 712-805 882-993 (1265)
272 KOG0974 WD-repeat protein WDR6 96.3 0.07 1.5E-06 64.2 15.0 169 64-245 107-287 (967)
273 PF08450 SGL: SMP-30/Gluconola 96.3 0.7 1.5E-05 48.5 21.5 190 64-271 20-236 (246)
274 PF10282 Lactonase: Lactonase, 96.2 1.1 2.3E-05 50.0 23.6 194 37-246 41-275 (345)
275 KOG4190 Uncharacterized conser 96.2 0.0048 1E-07 68.5 4.6 169 70-252 720-912 (1034)
276 KOG3881 Uncharacterized conser 96.2 0.22 4.8E-06 54.0 16.7 177 65-251 124-325 (412)
277 KOG2041 WD40 repeat protein [G 96.2 0.22 4.7E-06 57.7 17.3 244 40-307 123-443 (1189)
278 PF08450 SGL: SMP-30/Gluconola 96.2 0.56 1.2E-05 49.3 20.1 188 92-289 4-215 (246)
279 KOG2321 WD40 repeat protein [G 96.2 0.039 8.5E-07 62.2 11.3 164 68-241 157-338 (703)
280 COG5354 Uncharacterized protei 96.1 0.8 1.7E-05 51.5 21.1 253 33-314 33-348 (561)
281 KOG0644 Uncharacterized conser 96.1 0.048 1E-06 64.0 12.0 89 35-142 193-284 (1113)
282 PLN03077 Protein ECB2; Provisi 96.1 6.2 0.00013 49.7 34.0 111 695-805 327-452 (857)
283 TIGR03300 assembly_YfgL outer 96.1 2.1 4.6E-05 48.0 25.6 246 64-325 73-349 (377)
284 KOG1523 Actin-related protein 96.0 0.23 4.9E-06 52.7 15.5 187 32-234 55-267 (361)
285 PF11768 DUF3312: Protein of u 96.0 0.26 5.7E-06 56.4 17.1 64 186-249 266-332 (545)
286 PF15492 Nbas_N: Neuroblastoma 96.0 0.8 1.7E-05 48.2 19.0 71 37-120 2-77 (282)
287 KOG2314 Translation initiation 95.9 1.4 3.1E-05 50.1 21.8 78 35-114 252-332 (698)
288 KOG4227 WD40 repeat protein [G 95.9 0.28 6E-06 53.0 15.5 168 81-257 52-237 (609)
289 PF07433 DUF1513: Protein of u 95.8 1.1 2.3E-05 48.4 19.9 97 37-152 9-118 (305)
290 TIGR02658 TTQ_MADH_Hv methylam 95.7 1.6 3.4E-05 48.5 21.4 199 37-254 109-338 (352)
291 PLN03218 maturation of RBCL 1; 95.7 3.8 8.2E-05 52.3 27.4 111 693-803 581-710 (1060)
292 PF04053 Coatomer_WDAD: Coatom 95.6 2.2 4.8E-05 49.0 23.1 140 32-210 32-174 (443)
293 KOG0650 WD40 repeat nucleolar 95.6 0.18 3.9E-06 57.4 13.3 166 65-244 496-678 (733)
294 PF06977 SdiA-regulated: SdiA- 95.4 3.1 6.7E-05 43.9 21.4 177 35-228 24-233 (248)
295 PF13360 PQQ_2: PQQ-like domai 95.2 1 2.3E-05 46.6 17.4 179 64-249 44-233 (238)
296 COG0823 TolB Periplasmic compo 95.1 0.32 7E-06 55.5 14.1 155 65-237 172-346 (425)
297 KOG3881 Uncharacterized conser 95.1 1 2.3E-05 49.0 16.7 203 88-322 106-328 (412)
298 TIGR03300 assembly_YfgL outer 94.8 6.6 0.00014 44.0 23.6 177 64-257 153-349 (377)
299 KOG4640 Anaphase-promoting com 94.7 0.092 2E-06 60.2 8.2 97 37-153 25-125 (665)
300 smart00320 WD40 WD40 repeats. 94.7 0.081 1.8E-06 36.1 5.1 38 75-114 2-40 (40)
301 COG0823 TolB Periplasmic compo 94.6 0.48 1E-05 54.1 13.8 177 37-238 197-391 (425)
302 PF00780 CNH: CNH domain; Int 94.6 5.9 0.00013 42.2 21.7 216 98-326 7-267 (275)
303 PRK13616 lipoprotein LpqB; Pro 94.5 4.4 9.5E-05 48.4 22.0 107 182-289 399-529 (591)
304 KOG0882 Cyclophilin-related pe 94.4 0.2 4.3E-06 55.3 9.4 224 88-320 10-311 (558)
305 PF13360 PQQ_2: PQQ-like domai 94.4 7.2 0.00016 40.2 24.8 139 65-212 2-144 (238)
306 KOG2114 Vacuolar assembly/sort 94.4 16 0.00034 44.2 37.2 135 65-211 90-245 (933)
307 KOG3914 WD repeat protein WDR4 94.0 0.16 3.4E-06 55.3 7.7 89 65-162 131-224 (390)
308 KOG4532 WD40-like repeat conta 93.8 2.4 5.1E-05 44.2 15.1 98 32-145 158-263 (344)
309 KOG3617 WD40 and TPR repeat-co 93.7 0.49 1.1E-05 56.0 11.3 273 505-816 759-1074(1416)
310 KOG0280 Uncharacterized conser 93.4 4.4 9.5E-05 42.9 16.5 194 65-268 45-262 (339)
311 KOG0280 Uncharacterized conser 93.3 1.7 3.6E-05 45.9 13.2 167 64-239 93-278 (339)
312 PF12894 Apc4_WD40: Anaphase-p 93.0 0.24 5.2E-06 37.8 5.1 34 216-249 11-44 (47)
313 TIGR02604 Piru_Ver_Nterm putat 92.5 4.5 9.7E-05 45.4 16.9 144 88-237 14-204 (367)
314 KOG2066 Vacuolar assembly/sort 92.5 1 2.2E-05 53.3 11.7 132 190-326 48-199 (846)
315 PF06433 Me-amine-dh_H: Methyl 92.2 16 0.00034 40.2 19.5 241 37-324 40-330 (342)
316 KOG4547 WD40 repeat-containing 92.1 9.9 0.00021 43.8 18.4 112 101-227 73-195 (541)
317 PF10168 Nup88: Nuclear pore c 91.9 3.9 8.5E-05 49.8 16.2 77 30-116 82-179 (717)
318 KOG3621 WD40 repeat-containing 91.8 15 0.00033 43.4 19.7 279 33-333 34-366 (726)
319 KOG3617 WD40 and TPR repeat-co 91.5 7.1 0.00015 46.7 16.8 261 441-759 1097-1370(1416)
320 PF08553 VID27: VID27 cytoplas 91.5 1.3 2.8E-05 53.9 11.5 65 36-114 580-645 (794)
321 KOG0985 Vesicle coat protein c 91.5 35 0.00077 42.2 22.5 261 554-820 980-1263(1666)
322 PF14783 BBS2_Mid: Ciliary BBS 91.5 2.2 4.8E-05 38.8 10.2 88 187-279 10-105 (111)
323 PF10647 Gmad1: Lipoprotein Lp 91.4 22 0.00047 37.7 21.3 97 181-277 67-183 (253)
324 PRK11138 outer membrane biogen 91.1 31 0.00068 39.0 26.1 97 64-168 77-186 (394)
325 COG5170 CDC55 Serine/threonine 91.0 3.2 7E-05 44.0 12.2 62 186-248 228-311 (460)
326 PF14727 PHTB1_N: PTHB1 N-term 90.8 19 0.00042 40.9 19.4 201 17-243 116-357 (418)
327 PRK13616 lipoprotein LpqB; Pro 90.8 18 0.00038 43.4 20.0 188 36-242 353-564 (591)
328 PF12894 Apc4_WD40: Anaphase-p 90.5 0.6 1.3E-05 35.6 4.9 32 88-119 12-44 (47)
329 PF14870 PSII_BNR: Photosynthe 90.5 25 0.00054 38.3 19.1 166 66-241 115-299 (302)
330 PF03178 CPSF_A: CPSF A subuni 90.4 5.2 0.00011 43.9 14.3 167 66-246 2-202 (321)
331 KOG2314 Translation initiation 90.4 5.7 0.00012 45.4 14.2 131 137-278 215-365 (698)
332 KOG1334 WD40 repeat protein [G 90.4 3.4 7.3E-05 46.5 12.3 154 77-244 134-310 (559)
333 KOG1645 RING-finger-containing 89.9 11 0.00025 41.5 15.5 67 36-116 197-266 (463)
334 smart00320 WD40 WD40 repeats. 89.5 0.61 1.3E-05 31.4 4.1 30 215-244 11-40 (40)
335 smart00299 CLH Clathrin heavy 89.5 8.9 0.00019 36.3 13.4 86 721-807 40-126 (140)
336 KOG4547 WD40 repeat-containing 89.4 21 0.00046 41.2 17.9 111 64-182 78-192 (541)
337 PF00637 Clathrin: Region in C 89.2 0.13 2.7E-06 49.3 0.3 122 696-818 12-137 (143)
338 KOG1310 WD40 repeat protein [G 88.9 0.98 2.1E-05 51.2 6.9 66 181-246 52-125 (758)
339 PF11768 DUF3312: Protein of u 88.8 26 0.00056 40.7 18.2 116 437-566 408-531 (545)
340 KOG2079 Vacuolar assembly/sort 88.7 4.3 9.4E-05 49.9 12.4 179 88-276 90-285 (1206)
341 KOG2280 Vacuolar assembly/sort 88.7 16 0.00034 43.6 16.6 128 689-816 435-572 (829)
342 PF13934 ELYS: Nuclear pore co 88.3 11 0.00024 39.3 14.0 109 708-816 64-182 (226)
343 KOG1275 PAB-dependent poly(A) 87.6 11 0.00023 45.8 14.5 156 76-245 168-341 (1118)
344 KOG4532 WD40-like repeat conta 87.5 35 0.00077 35.9 16.5 134 100-244 130-280 (344)
345 PF14783 BBS2_Mid: Ciliary BBS 87.0 11 0.00024 34.3 11.3 50 63-116 22-71 (111)
346 PF14655 RAB3GAP2_N: Rab3 GTPa 86.8 5 0.00011 45.6 11.1 48 218-268 309-356 (415)
347 PF14649 Spatacsin_C: Spatacsi 86.8 51 0.0011 35.7 20.8 104 642-746 166-277 (296)
348 KOG1811 Predicted Zn2+-binding 86.5 39 0.00085 39.3 17.5 109 708-816 982-1121(1141)
349 COG3204 Uncharacterized protei 86.3 48 0.001 35.6 17.0 60 88-152 86-148 (316)
350 PRK02888 nitrous-oxide reducta 86.3 15 0.00033 43.5 14.9 98 134-236 322-451 (635)
351 PF04841 Vps16_N: Vps16, N-ter 86.2 8.7 0.00019 43.8 12.9 96 35-153 219-316 (410)
352 PF10647 Gmad1: Lipoprotein Lp 85.4 43 0.00093 35.4 16.9 102 33-149 24-128 (253)
353 KOG2079 Vacuolar assembly/sort 84.4 3.1 6.6E-05 51.1 8.2 111 32-157 87-202 (1206)
354 KOG1645 RING-finger-containing 84.2 21 0.00045 39.6 13.6 139 132-278 193-350 (463)
355 PRK13684 Ycf48-like protein; P 83.8 76 0.0016 35.1 24.5 224 88-323 46-296 (334)
356 PRK11138 outer membrane biogen 83.6 83 0.0018 35.5 23.7 177 64-256 168-363 (394)
357 PF07433 DUF1513: Protein of u 83.4 60 0.0013 35.2 16.7 63 37-108 55-119 (305)
358 KOG1064 RAVE (regulator of V-A 83.2 4.4 9.5E-05 52.5 9.1 208 64-326 2188-2410(2439)
359 KOG4714 Nucleoporin [Nuclear s 83.1 5.2 0.00011 41.7 8.1 159 77-246 81-254 (319)
360 KOG1409 Uncharacterized conser 83.1 8.5 0.00018 41.6 10.0 52 66-119 178-230 (404)
361 KOG1064 RAVE (regulator of V-A 83.0 4 8.7E-05 52.8 8.6 166 62-246 2226-2398(2439)
362 PRK13684 Ycf48-like protein; P 82.9 65 0.0014 35.6 17.7 66 88-155 215-283 (334)
363 PLN00033 photosystem II stabil 82.8 68 0.0015 36.4 17.9 62 88-153 281-348 (398)
364 KOG1354 Serine/threonine prote 82.5 12 0.00025 40.6 10.6 156 88-244 26-242 (433)
365 PF14870 PSII_BNR: Photosynthe 81.9 84 0.0018 34.3 21.9 252 74-337 4-286 (302)
366 PF11635 Med16: Mediator compl 81.8 1.4E+02 0.0031 36.9 23.1 80 217-309 260-345 (753)
367 KOG1409 Uncharacterized conser 81.6 86 0.0019 34.3 17.6 198 19-246 12-227 (404)
368 KOG2377 Uncharacterized conser 81.1 15 0.00033 41.2 11.3 68 36-116 70-140 (657)
369 PF02897 Peptidase_S9_N: Proly 80.7 1.1E+02 0.0023 34.7 19.4 58 37-105 128-188 (414)
370 PF05935 Arylsulfotrans: Aryls 80.7 25 0.00055 41.0 14.0 183 64-249 126-370 (477)
371 KOG3621 WD40 repeat-containing 80.5 31 0.00067 40.9 14.0 94 7-116 53-154 (726)
372 TIGR01063 gyrA DNA gyrase, A s 80.4 67 0.0015 40.0 18.1 86 228-319 700-792 (800)
373 PF08553 VID27: VID27 cytoplas 80.3 16 0.00035 44.8 12.3 86 64-153 550-639 (794)
374 KOG2395 Protein involved in va 80.3 3.9 8.5E-05 46.6 6.6 68 35-116 432-500 (644)
375 KOG1912 WD40 repeat protein [G 80.3 67 0.0015 38.7 16.5 174 64-246 87-304 (1062)
376 smart00036 CNH Domain found in 80.1 95 0.0021 33.8 24.1 109 217-325 152-281 (302)
377 KOG1912 WD40 repeat protein [G 80.0 8.8 0.00019 45.7 9.5 45 230-275 439-483 (1062)
378 smart00299 CLH Clathrin heavy 79.5 24 0.00052 33.3 11.2 123 437-566 7-133 (140)
379 KOG4640 Anaphase-promoting com 79.5 5.2 0.00011 46.5 7.4 81 188-268 29-114 (665)
380 KOG2377 Uncharacterized conser 79.3 13 0.00028 41.8 10.0 89 190-279 32-132 (657)
381 PRK05560 DNA gyrase subunit A; 79.1 65 0.0014 40.2 17.4 92 223-320 698-796 (805)
382 PF07995 GSDH: Glucose / Sorbo 78.3 44 0.00096 36.9 14.4 63 88-151 2-71 (331)
383 KOG3616 Selective LIM binding 78.3 1.6E+02 0.0035 35.4 20.6 59 503-561 530-589 (1636)
384 PF07569 Hira: TUP1-like enhan 77.7 12 0.00027 38.6 9.1 58 190-248 21-97 (219)
385 PRK13979 DNA topoisomerase IV 77.1 1.2E+02 0.0026 38.6 18.8 56 96-157 619-686 (957)
386 PF07202 Tcp10_C: T-complex pr 76.9 84 0.0018 31.4 15.2 22 98-119 8-29 (179)
387 KOG4714 Nucleoporin [Nuclear s 76.2 55 0.0012 34.4 12.9 105 203-308 161-285 (319)
388 PF07569 Hira: TUP1-like enhan 74.3 21 0.00045 37.0 9.7 75 78-156 6-91 (219)
389 KOG2695 WD40 repeat protein [G 74.2 15 0.00032 39.9 8.5 118 182-326 255-388 (425)
390 PF10395 Utp8: Utp8 family; I 74.1 67 0.0015 38.6 14.7 154 88-257 130-316 (670)
391 PF12657 TFIIIC_delta: Transcr 73.9 19 0.00041 35.7 9.0 28 89-116 87-121 (173)
392 PF14583 Pectate_lyase22: Olig 73.4 40 0.00087 37.7 12.1 62 202-269 169-241 (386)
393 PF00780 CNH: CNH domain; Int 73.2 1.3E+02 0.0028 31.8 24.0 61 40-116 3-64 (275)
394 KOG0309 Conserved WD40 repeat- 71.2 10 0.00022 44.8 7.0 83 63-152 177-267 (1081)
395 KOG4190 Uncharacterized conser 71.2 8 0.00017 44.0 6.0 68 47-120 741-817 (1034)
396 PF12234 Rav1p_C: RAVE protein 70.9 43 0.00092 40.1 12.3 105 37-158 34-154 (631)
397 COG3391 Uncharacterized conser 70.8 1.9E+02 0.004 32.6 22.1 174 65-253 95-290 (381)
398 PRK12634 flgD flagellar basal 68.4 15 0.00033 38.0 7.1 87 64-155 122-212 (221)
399 KOG1275 PAB-dependent poly(A) 68.3 28 0.0006 42.5 9.8 129 63-209 194-342 (1118)
400 PF10493 Rod_C: Rough deal pro 68.2 1.2E+02 0.0026 36.1 15.3 161 407-583 336-547 (551)
401 KOG2695 WD40 repeat protein [G 67.1 24 0.00051 38.4 8.2 143 102-257 228-387 (425)
402 PF00930 DPPIV_N: Dipeptidyl p 66.6 1.2E+02 0.0026 33.7 14.5 101 36-151 187-300 (353)
403 PRK12633 flgD flagellar basal 66.1 16 0.00034 38.2 6.7 85 64-153 129-217 (230)
404 PF08596 Lgl_C: Lethal giant l 65.6 83 0.0018 35.7 12.9 169 64-237 105-327 (395)
405 COG5167 VID27 Protein involved 65.6 13 0.00029 42.2 6.3 69 37-119 566-635 (776)
406 KOG2395 Protein involved in va 63.4 43 0.00094 38.5 9.7 107 35-150 378-489 (644)
407 PF03178 CPSF_A: CPSF A subuni 60.8 2.5E+02 0.0054 30.5 15.9 162 66-243 62-262 (321)
408 PF06977 SdiA-regulated: SdiA- 60.3 59 0.0013 34.4 9.8 66 37-113 175-247 (248)
409 COG5290 IkappaB kinase complex 60.1 4E+02 0.0087 32.7 19.4 83 728-815 954-1046(1243)
410 KOG1832 HIV-1 Vpr-binding prot 58.8 15 0.00033 44.4 5.4 174 32-235 1101-1285(1516)
411 PRK02888 nitrous-oxide reducta 58.6 83 0.0018 37.6 11.4 58 187-246 284-351 (635)
412 KOG1832 HIV-1 Vpr-binding prot 58.3 22 0.00047 43.2 6.6 212 77-345 1093-1320(1516)
413 COG3490 Uncharacterized protei 58.1 2.7E+02 0.0058 30.0 16.0 77 67-154 92-183 (366)
414 KOG4659 Uncharacterized conser 57.5 1.9E+02 0.0042 37.2 14.3 29 91-119 596-628 (1899)
415 PF00930 DPPIV_N: Dipeptidyl p 57.5 16 0.00035 40.6 5.4 71 41-116 1-71 (353)
416 PLN00033 photosystem II stabil 55.3 3.6E+02 0.0079 30.6 21.5 145 88-243 239-396 (398)
417 PF10313 DUF2415: Uncharacteri 54.7 29 0.00062 26.0 4.4 29 217-245 1-32 (43)
418 KOG1898 Splicing factor 3b, su 54.1 1.2E+02 0.0026 37.9 11.9 138 65-209 469-618 (1205)
419 PF14761 HPS3_N: Hermansky-Pud 53.3 63 0.0014 33.2 8.2 73 154-238 2-81 (215)
420 TIGR02917 PEP_TPR_lipo putativ 53.2 5.2E+02 0.011 31.8 29.4 100 701-800 577-692 (899)
421 PF07035 Mic1: Colon cancer-as 53.1 1E+02 0.0022 30.5 9.4 82 721-803 28-115 (167)
422 KOG4460 Nuclear pore complex, 52.9 27 0.00058 40.1 5.9 82 31-116 102-198 (741)
423 PF07676 PD40: WD40-like Beta 52.0 33 0.00072 24.4 4.5 21 217-237 9-29 (39)
424 PRK06655 flgD flagellar basal 51.9 40 0.00088 35.0 6.8 80 64-151 126-211 (225)
425 COG3391 Uncharacterized conser 51.2 4E+02 0.0087 29.9 19.3 76 34-121 117-195 (381)
426 KOG1334 WD40 repeat protein [G 51.0 1E+02 0.0022 35.3 9.8 158 89-246 283-466 (559)
427 PF13429 TPR_15: Tetratricopep 50.8 19 0.0004 38.5 4.4 57 720-776 108-171 (280)
428 KOG2063 Vacuolar assembly/sort 50.7 2.5E+02 0.0054 35.2 14.1 103 220-323 159-277 (877)
429 PRK14574 hmsH outer membrane p 50.3 6.2E+02 0.013 31.8 17.8 108 695-802 207-352 (822)
430 PRK10747 putative protoheme IX 49.2 4.4E+02 0.0095 29.8 21.1 101 698-799 270-383 (398)
431 PF02259 FAT: FAT domain; Int 48.0 81 0.0018 34.5 9.1 51 728-778 4-56 (352)
432 PF13449 Phytase-like: Esteras 47.7 1.7E+02 0.0038 32.1 11.5 44 65-108 111-168 (326)
433 COG3386 Gluconolactonase [Carb 47.4 4.1E+02 0.009 29.0 20.4 191 64-271 45-266 (307)
434 COG3386 Gluconolactonase [Carb 45.4 4.4E+02 0.0096 28.8 19.8 113 201-314 143-276 (307)
435 PF03088 Str_synth: Strictosid 45.2 1.5E+02 0.0033 26.0 8.3 76 37-114 2-83 (89)
436 COG5170 CDC55 Serine/threonine 45.1 1E+02 0.0022 33.2 8.3 149 88-246 27-201 (460)
437 PHA02248 hypothetical protein 44.9 28 0.00061 33.0 3.8 62 39-112 49-124 (204)
438 TIGR01063 gyrA DNA gyrase, A s 44.4 4.9E+02 0.011 32.6 15.6 147 94-244 491-666 (800)
439 TIGR01062 parC_Gneg DNA topois 44.2 4.6E+02 0.0099 32.4 15.0 118 190-314 535-671 (735)
440 PF07899 Frigida: Frigida-like 43.4 2.1E+02 0.0047 30.9 10.9 159 303-474 20-215 (290)
441 PF12569 NARP1: NMDA receptor- 43.0 6.3E+02 0.014 29.8 18.5 39 510-548 11-57 (517)
442 PRK12812 flgD flagellar basal 42.3 1E+02 0.0022 32.7 8.1 89 64-159 141-233 (259)
443 PF07202 Tcp10_C: T-complex pr 42.2 3.7E+02 0.008 26.9 12.8 18 226-243 44-61 (179)
444 KOG1070 rRNA processing protei 42.2 7.3E+02 0.016 32.8 16.1 205 573-816 1443-1660(1710)
445 KOG3717 Carnitine O-acyltransf 41.8 1.1E+02 0.0025 35.5 8.7 122 388-541 394-523 (612)
446 KOG4460 Nuclear pore complex, 41.6 2.3E+02 0.0049 33.0 10.8 22 219-240 106-127 (741)
447 TIGR03606 non_repeat_PQQ dehyd 41.4 6.2E+02 0.013 29.3 19.7 57 88-144 30-90 (454)
448 KOG2076 RNA polymerase III tra 41.3 6.6E+02 0.014 31.3 15.2 90 739-828 397-508 (895)
449 PRK00400 hisE phosphoribosyl-A 41.2 1.8E+02 0.0039 26.4 8.3 83 488-584 6-91 (105)
450 KOG4659 Uncharacterized conser 40.3 9.9E+02 0.021 31.4 18.8 68 89-160 366-437 (1899)
451 PRK12813 flgD flagellar basal 40.2 91 0.002 32.4 7.2 87 64-158 124-214 (223)
452 TIGR01643 YD_repeat_2x YD repe 39.5 73 0.0016 23.0 4.7 40 71-113 1-41 (42)
453 PF14517 Tachylectin: Tachylec 39.1 16 0.00034 37.9 1.4 71 36-114 37-107 (229)
454 PF02897 Peptidase_S9_N: Proly 38.8 43 0.00093 38.0 5.1 54 220-275 127-185 (414)
455 PF00637 Clathrin: Region in C 38.6 12 0.00026 35.4 0.5 80 488-571 59-138 (143)
456 PRK11788 tetratricopeptide rep 38.6 3.8E+02 0.0083 29.6 12.8 106 697-802 147-274 (389)
457 PF05096 Glu_cyclase_2: Glutam 38.6 5.2E+02 0.011 27.6 14.9 119 76-210 34-158 (264)
458 KOG2444 WD40 repeat protein [G 37.6 1.2E+02 0.0027 31.3 7.4 19 98-116 70-88 (238)
459 PF09958 DUF2192: Uncharacteri 36.8 4.8E+02 0.01 27.1 11.4 62 382-465 119-180 (231)
460 PF10168 Nup88: Nuclear pore c 36.3 9.2E+02 0.02 29.8 20.9 23 188-210 158-180 (717)
461 PRK13615 lipoprotein LpqB; Pro 36.1 7.9E+02 0.017 29.3 14.9 132 137-276 338-486 (557)
462 PF07995 GSDH: Glucose / Sorbo 36.1 2.3E+02 0.0049 31.3 10.1 57 36-106 5-71 (331)
463 PF11134 Phage_stabilise: Phag 35.2 7.4E+02 0.016 28.4 18.6 109 37-159 91-210 (469)
464 KOG0624 dsRNA-activated protei 35.1 6.7E+02 0.014 27.9 14.3 102 693-801 242-365 (504)
465 PF13860 FlgD_ig: FlgD Ig-like 34.8 51 0.0011 28.1 3.7 32 65-96 26-57 (81)
466 KOG1520 Predicted alkaloid syn 34.7 2.7E+02 0.0059 31.1 10.0 38 88-125 115-153 (376)
467 PRK11788 tetratricopeptide rep 34.2 6.7E+02 0.015 27.6 20.8 101 702-802 191-307 (389)
468 COG5184 ATS1 Alpha-tubulin sup 33.5 3.7E+02 0.0079 31.0 10.9 41 78-119 221-263 (476)
469 PF05593 RHS_repeat: RHS Repea 33.2 97 0.0021 22.2 4.4 30 71-103 1-30 (38)
470 PF13838 Clathrin_H_link: Clat 32.9 2E+02 0.0044 23.7 6.6 34 781-814 10-48 (66)
471 PF13929 mRNA_stabil: mRNA sta 32.2 1.3E+02 0.0028 32.4 6.9 67 710-776 189-263 (292)
472 KOG1916 Nuclear protein, conta 32.2 1E+02 0.0022 37.9 6.7 109 132-245 132-264 (1283)
473 PF14727 PHTB1_N: PTHB1 N-term 32.2 8.2E+02 0.018 28.0 18.7 141 99-243 38-201 (418)
474 PF14779 BBS1: Ciliary BBSome 31.7 74 0.0016 33.7 5.0 174 64-243 43-255 (257)
475 TIGR02171 Fb_sc_TIGR02171 Fibr 31.5 2.2E+02 0.0047 35.6 9.4 58 179-236 349-419 (912)
476 PF09295 ChAPs: ChAPs (Chs5p-A 31.3 2.4E+02 0.0052 32.0 9.3 107 694-800 171-291 (395)
477 KOG0882 Cyclophilin-related pe 31.2 1.5E+02 0.0032 33.7 7.2 121 190-315 19-175 (558)
478 KOG3616 Selective LIM binding 30.6 1.1E+03 0.023 28.9 27.7 109 698-815 1220-1330(1636)
479 PF10433 MMS1_N: Mono-function 29.9 8.3E+02 0.018 28.5 14.1 212 36-324 47-298 (504)
480 PF01436 NHL: NHL repeat; Int 29.4 96 0.0021 20.5 3.6 23 220-242 5-27 (28)
481 PF12234 Rav1p_C: RAVE protein 28.9 2.5E+02 0.0054 33.9 9.2 69 215-286 28-103 (631)
482 PF12341 DUF3639: Protein of u 28.5 1.1E+02 0.0024 20.5 3.5 25 218-244 3-27 (27)
483 PF08625 Utp13: Utp13 specific 28.4 92 0.002 29.9 4.6 53 782-834 2-59 (141)
484 PF08822 DUF1804: Protein of u 28.3 3.5E+02 0.0076 26.6 8.5 108 694-803 7-118 (165)
485 PRK10747 putative protoheme IX 28.3 3.9E+02 0.0084 30.2 10.6 18 759-776 161-178 (398)
486 PF09384 UTP15_C: UTP15 C term 28.1 62 0.0013 31.2 3.5 38 534-571 23-61 (148)
487 PF08801 Nucleoporin_N: Nup133 28.1 5.5E+02 0.012 29.1 11.9 30 218-247 191-220 (422)
488 KOG2034 Vacuolar sorting prote 28.1 1.2E+02 0.0027 37.2 6.5 65 749-813 502-566 (911)
489 PF10395 Utp8: Utp8 family; I 27.9 7.4E+02 0.016 30.1 12.8 150 39-210 136-306 (670)
490 PF10214 Rrn6: RNA polymerase 27.6 1.2E+03 0.026 29.1 15.4 111 33-158 146-274 (765)
491 PF01453 B_lectin: D-mannose b 27.4 4.8E+02 0.01 23.8 9.3 62 91-163 21-82 (114)
492 COG4590 ABC-type uncharacteriz 27.1 1.7E+02 0.0036 33.3 6.8 161 73-244 208-384 (733)
493 PRK15174 Vi polysaccharide exp 26.9 1.2E+03 0.026 28.3 24.1 101 700-800 221-341 (656)
494 PF03177 Nucleoporin_C: Non-re 26.9 1.9E+02 0.004 34.7 8.1 142 536-682 272-452 (586)
495 PRK13613 lipoprotein LpqB; Pro 26.8 1.2E+03 0.026 28.1 17.6 184 34-242 364-578 (599)
496 KOG3630 Nuclear pore complex, 26.7 2.6E+02 0.0056 35.6 8.8 61 217-277 199-261 (1405)
497 TIGR00990 3a0801s09 mitochondr 26.5 1.2E+03 0.025 28.0 19.2 22 755-776 546-567 (615)
498 KOG0309 Conserved WD40 repeat- 26.3 2.1E+02 0.0046 34.6 7.7 34 431-464 497-530 (1081)
499 PF13449 Phytase-like: Esteras 26.3 8.8E+02 0.019 26.5 15.2 23 87-109 19-42 (326)
500 PF12110 Nup96: Nuclear protei 26.2 2.3E+02 0.0049 30.7 7.8 48 779-827 1-48 (290)
No 1
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-186 Score=1525.27 Aligned_cols=804 Identities=41% Similarity=0.679 Sum_probs=760.0
Q ss_pred CCCCcccccccccccEEeeccccccccCCCCCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeE
Q 003205 1 MANVSVAAEWQLVYNRYYRKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISE 80 (839)
Q Consensus 1 m~~~~~~~~W~~Lg~~~yr~~e~y~m~w~~~~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~t 80 (839)
|++.+|+++|++|+|+|||++|+|.|+|+-.|+.+..+++||+|||||++|+|+|+++.. +..+.|+|||.+|+++++
T Consensus 1 ~a~~~p~~eWell~d~fYrk~eiy~~~W~l~dl~~~~fa~Ap~gGpIAV~r~p~~~~~~~--~a~~~I~If~~sG~lL~~ 78 (829)
T KOG2280|consen 1 MAMKYPTAEWELLLDVFYRKQEIYFMKWPLTDLYYVYFACAPFGGPIAVTRSPSKLVPLY--SARPYIRIFNISGQLLGR 78 (829)
T ss_pred CCCcCcccchhhhHhhhhhhhhhcccCCcccccceeEEEecccCCceEEEeccccccccc--ccceeEEEEeccccchHH
Confidence 788999999999999999999999999986689999999999999999999999999875 468999999999999999
Q ss_pred EEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCCCCcccc-CCCCCccccccCeEEEEEECCeEEEEecCCeEEEEec
Q 003205 81 TVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEP-NASMGKECFEENVVECVFWGNGVVCVTEANRYFCMAD 159 (839)
Q Consensus 81 i~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~~~~-~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~ 159 (839)
+.|+. +++++|+||.+|+|+||+.||+|++|++.|++.++ ++|. |++..+|.+|++|.+|++++|.+++++.+++
T Consensus 79 ~~w~~--~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~--e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~ 154 (829)
T KOG2280|consen 79 ILWKH--GELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGF--ESQMSDIVECRFFHNGVAVLTVSGQVILING 154 (829)
T ss_pred HHhcC--CCeeeecccCCceEEEEeccceEEEeecchhhhccccccc--ccccCceeEEEEecCceEEEecCCcEEEEcC
Confidence 99998 99999999999999999999999999999999654 5555 5568889999999999999999999999999
Q ss_pred CCCceEEEcCCCCCC-CCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----cccCCCceEEEECCCCcEEEEe
Q 003205 160 FATMKVCELARPEVE-ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACF 234 (839)
Q Consensus 160 ~~~~~~~~l~~~~~~-~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~ 234 (839)
++.|..+.+++.|.. .+++||++++|.++++.-..|..++.--++..+....+ ....+.|..|++|||+++||++
T Consensus 155 ~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLy 234 (829)
T KOG2280|consen 155 VEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALY 234 (829)
T ss_pred CCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEE
Confidence 999999999986643 45699999999665555444443333333444433333 1224779999999999999999
Q ss_pred ecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCCceEeccCCCeEEeecCCceEEEccC
Q 003205 235 THDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNS 314 (839)
Q Consensus 235 ~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~~~l~~E~DGvRIit~~ 314 (839)
|.+|.||+.+.|+++++|||++....+|.||+|||||+|+++|++.+.++||.|++|.|+||..+++++|+|||||||++
T Consensus 235 t~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~WcgndaVvl~~e~~l~lvgp~gd~V~f~yd~t~~l~~E~DGVRI~t~t 314 (829)
T KOG2280|consen 235 TETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGNDAVVLSWEVNLMLVGPPGDSVQFYYDETAILSAEVDGVRIITST 314 (829)
T ss_pred ecCCcEEEEecchhhhhhccCCCCCCchHhceeecCCceEEEEeeeEEEEcCCCCccccccCCCceeeeccCeeEEeccc
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeccchhhHhhhccCCCChhhhHHHHHHHHhccChhhHHHHHHhhhhHHHHHHHHHHHccccCCHHHHHHHHHHhc
Q 003205 315 SMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAAS 394 (839)
Q Consensus 315 ~~~~l~~Vp~~~~~vf~igS~~pga~L~~A~~~~~~~~~~a~e~lr~i~~~L~~AV~~CI~AA~~e~d~~~Qk~LL~AAs 394 (839)
++|||++||.++++||+|||++|||+|++|+++|+.++++|||+|+.++++|.+||++||+||++||.|++||.||+|||
T Consensus 315 ~~EFl~rvp~~~enIF~igS~ePgA~L~eA~q~~e~~S~kade~L~~~~e~L~~aV~~CI~aA~~ef~pe~QK~LL~AAs 394 (829)
T KOG2280|consen 315 SHEFLQRVPAETENIFKIGSTEPGALLYEAFQKMEQKSGKADEYLSEIREDLYKAVDDCIEAACDEFQPEEQKSLLRAAS 394 (829)
T ss_pred hHHHHHhCChhhhhHhhcCCCCchHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccChhHHHHHhhhhhhhhccCCCCCcccccHHHHHhCChHHHHHHHHHcCChHHHHHHHHHhCCCh---hhHH
Q 003205 395 YGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQ---EVVI 471 (839)
Q Consensus 395 fGk~f~~~~~~~~fv~~c~~LRvLn~lr~~~igi~lT~~Q~~~l~~~~li~rL~~r~~~~lA~~I~~~l~~~~---~~I~ 471 (839)
|||.|+.++|+++|+.+|+.|||||++|.+.+|||||++||.+|+.+++|+||+.|++|.+|++||++|+.|. ++||
T Consensus 395 fGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl 474 (829)
T KOG2280|consen 395 FGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVL 474 (829)
T ss_pred hcccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHhHhhhhhhcCCCChHHHHHHHHHHhcc--CCCCCHHHHHHHHHHhCcHHHHHHHHhcCCCCCCchhhhhccCchHHHH
Q 003205 472 MHWACSKITASLAIPDVTLLEILLDKLKL--CKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTAL 549 (839)
Q Consensus 472 ~~WA~~kI~~~~~~~D~~l~~~I~~kl~~--~~~is~~~IA~~A~~~gR~~LA~~Ll~~E~~~~~qV~lLl~~~~~~~AL 549 (839)
.|||+.|| ++++.+|+++++.|.+||+. .|+|||++||++|+++||++||++|+++||+...|||+||+|++++.||
T Consensus 475 ~~Wa~~kI-~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL 553 (829)
T KOG2280|consen 475 LEWARRKI-KQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLAL 553 (829)
T ss_pred HHHHHHHH-hccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHH
Confidence 99999999 55689999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCchHHHHHHHHHHhhCChhHHHHHHhcChhHHHHHHHHHHhcCHHHHHHHHHhcCChhHHHHHHHHHHHhcCC
Q 003205 550 VKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGK 629 (839)
Q Consensus 550 ~~Ai~S~D~dLI~~vll~l~~~l~~~~f~~~l~~~p~a~~~~~~y~~~~~~~~L~~~~~~~~~~~e~a~~~l~~~~~~~~ 629 (839)
.||++|||+|||++||+||++++..++|+++|+..|.|.++|..|+|+++...|+|||+|+|++.++|.++++..+..+.
T Consensus 554 ~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~ 633 (829)
T KOG2280|consen 554 KKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAET 633 (829)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887766
Q ss_pred CCCCCCCCCCcchHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHHHHHHHHcCCcch
Q 003205 630 NPMASNGSALHGPRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRA 709 (839)
Q Consensus 630 ~~~~~~~~~~~~~k~~~L~~a~~~~~~~~~~~f~~~~~~~~~~Ll~~Q~~Le~~~~~~~f~~~Sl~~ti~~l~~~~~~k~ 709 (839)
.+ +|...|+.|.+.|.++++..|++++++++++|+.+|..|+.+++. +|+|+||+|||.+|+..|+.+.
T Consensus 634 ~~----------~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~-~f~dlSl~dTv~~li~~g~~k~ 702 (829)
T KOG2280|consen 634 IE----------GRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGG-SFVDLSLHDTVTTLILIGQNKR 702 (829)
T ss_pred hc----------ccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc-ccccCcHHHHHHHHHHccchHH
Confidence 66 899999999999999999999999999999999999999999998 8999999999999999999999
Q ss_pred HHhHHhHcCCChHHHHHHHHHHHHhCCChhHHHHhhccCCCCCCchHHHHHHHhcCCHHHHHHhhccCCCHHHHHHHHHH
Q 003205 710 AMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYAR 789 (839)
Q Consensus 710 a~~l~k~fkvsdkr~~~~kl~ala~~~~w~~L~~f~~~KKspIgyepfv~~~~~~~~~~ea~~yI~~i~d~~~r~~~~~~ 789 (839)
|++|+++||||||||||+||.+|++.++|++|++|+++|||||||+|||++|+++||++||.|||+||++..+|+++|++
T Consensus 703 a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskksPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~ekv~ay~~ 782 (829)
T KOG2280|consen 703 AEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKSPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQEKVKAYLR 782 (829)
T ss_pred HHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCCCCCchhHHHHHHhcccHHHHhhhhhccCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred cCCHHHHHHHHHhcCCHHHHHHHHHHhcCChhH
Q 003205 790 IGMAKEAADAASQAKDGELLGRLKLTFAQNAAA 822 (839)
Q Consensus 790 ~~~~~~A~~~a~~~kd~~~L~~i~~~~~~~~~~ 822 (839)
+|++++|+++|.++||...|.+++.+++.+++.
T Consensus 783 ~~~~~eAad~A~~~rd~~~L~ev~~~~~~~~~~ 815 (829)
T KOG2280|consen 783 VGDVKEAADLAAEHRDGAELSEVLSKCTGAPDG 815 (829)
T ss_pred hccHHHHHHHHHHhcChHHHHHHHHhcCCCCcc
Confidence 999999999999999999999999999755543
No 2
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=100.00 E-value=2.1e-88 Score=761.60 Aligned_cols=398 Identities=43% Similarity=0.772 Sum_probs=361.6
Q ss_pred ccccccccccEEeeccccccccCC-CCCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCce-EEEEcCCCCceeEEEe
Q 003205 6 VAAEWQLVYNRYYRKPELYQMRWK-HIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRK-LRIFNSAGVLISETVW 83 (839)
Q Consensus 6 ~~~~W~~Lg~~~yr~~e~y~m~w~-~~~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~-I~iy~~~G~ll~ti~~ 83 (839)
||++|++|||+|||++++|+|+|+ +.+++++.||+||+|||||+.||++|++.. ++.+|. |+|||++|++|++|.|
T Consensus 1 ps~~W~~L~d~~Yrk~~ly~m~W~~~~~l~~~~va~a~~gGpIAi~~d~~k~~~~--~~~~p~~I~iys~sG~ll~~i~w 78 (410)
T PF04841_consen 1 PSANWEKLGDVYYRKRELYSMSWSLKDDLSDYIVAVAPYGGPIAIIRDESKLVPV--GSAKPNSIQIYSSSGKLLSSIPW 78 (410)
T ss_pred CCcCcEECCCEEEEEEEeccCCCCccccccceeEEEcCCCceEEEEecCcccccc--cCCCCcEEEEECCCCCEeEEEEE
Confidence 799999999999999999999998 678889999999999999999999999877 335665 9999999999999999
Q ss_pred cCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEE-----EEECCeEEEEecCCeEEEEe
Q 003205 84 KNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVEC-----VFWGNGVVCVTEANRYFCMA 158 (839)
Q Consensus 84 ~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~-----~~~~~G~v~~t~~~~~~~v~ 158 (839)
+. ++|++|+|+.+|+|++|++||+|++||++|++ +|++|.+++ +.+|.++ .+|++|++++|.+++||.++
T Consensus 79 ~~--~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~--~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~ 153 (410)
T PF04841_consen 79 DS--GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIE--EEKVLECRIFAIWFYKNGIVVLTGNNRFYVVN 153 (410)
T ss_pred CC--CCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhcc--ccCcccccccccccCCCCEEEECCCCeEEEEe
Confidence 99 99999999999999999999999999999999 999998665 7788877 55779999999999999999
Q ss_pred cCCCc-eEEEcCCCC-CCCCCceEEEeC--CCCCCCCcEEEEEEeCCeEEEEecCCcc-cccCCCceEEEECCCCcEEEE
Q 003205 159 DFATM-KVCELARPE-VEELPHCVAVIE--PKYTMTGSVEVLIGTDAGILMLDEDGVQ-KVDDTLSQKMAVSPNGNFVAC 233 (839)
Q Consensus 159 ~~~~~-~~~~l~~~~-~~~~~~~w~vi~--~~~S~~~~~~v~~s~d~tv~l~~~~~~~-~~~~~~i~~ia~Spng~~iA~ 233 (839)
|++++ ..+++++.+ .....+.|.... +.++.++..+++++.++++++++..... ....++|.+|++||||++||+
T Consensus 154 n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~i~~~~~i~~iavSpng~~iAl 233 (410)
T PF04841_consen 154 NIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQIDSDGPIIKIAVSPNGKFIAL 233 (410)
T ss_pred CccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccccccCCCCeEEEEECCCCCEEEE
Confidence 99876 334444322 212122222211 4577789999999999999988777653 334689999999999999999
Q ss_pred eecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCCceEeccCCCeEEeecCCceEEEcc
Q 003205 234 FTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSN 313 (839)
Q Consensus 234 ~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~~~l~~E~DGvRIit~ 313 (839)
++.+|++||+++||+++++|++++...+|.||.|||+|+|+++|++++.|+||++++++|+|++++++++|+||+||+|+
T Consensus 234 ~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~~~~l~lvg~~~~~~~~~~~~~~~l~~E~DG~riit~ 313 (410)
T PF04841_consen 234 FTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSWEDELLLVGPDGDSISFWYDGPVILVSEIDGVRIITS 313 (410)
T ss_pred EECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEeCCEEEEECCCCCceEEeccCceEEeccCCceEEEeC
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeccchhhHhhhccCCCChhhhHHHHHHHHhccChhhHHHHHHhhhhHHHHHHHHHHHccccCCHHHHHHHHHHh
Q 003205 314 SSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAA 393 (839)
Q Consensus 314 ~~~~~l~~Vp~~~~~vf~igS~~pga~L~~A~~~~~~~~~~a~e~lr~i~~~L~~AV~~CI~AA~~e~d~~~Qk~LL~AA 393 (839)
++|+||++||+++++||+|||++|||+|++|+++|++++|+|||+||.|+++|++||++||+||++||||++||+|||||
T Consensus 314 ~~~~~l~~Vp~~~~~if~igs~~p~a~L~~a~~~~~~~~~~a~e~lr~i~~~L~~Av~~Ci~AA~~e~d~~~Qk~LL~AA 393 (410)
T PF04841_consen 314 TSHEFLQRVPDSTENIFRIGSTSPGAILLDAYEEFEKRSPKADEYLRSIKDQLEEAVDDCIDAAGYEFDPDWQKRLLRAA 393 (410)
T ss_pred CceEEEEECCHHHHHHhcccCCCccHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhcccccccChhHHHH
Q 003205 394 SYGQAFCSNFQRDRIQE 410 (839)
Q Consensus 394 sfGk~f~~~~~~~~fv~ 410 (839)
||||+|++.+++|.||+
T Consensus 394 sfGk~fl~~~~~d~fv~ 410 (410)
T PF04841_consen 394 SFGKSFLDNYNPDEFVR 410 (410)
T ss_pred HhchhhhccCCchhccC
Confidence 99999999999999984
No 3
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=100.00 E-value=1.1e-77 Score=646.89 Aligned_cols=316 Identities=45% Similarity=0.710 Sum_probs=304.6
Q ss_pred CCHHHHHHHHHHhCcHHHHHHHHhcCCCCCCchhhhhccCchHHHHHHHHHcCCchHHHHHHHHHHhhCChhHHHHHHhc
Q 003205 504 ISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQT 583 (839)
Q Consensus 504 is~~~IA~~A~~~gR~~LA~~Ll~~E~~~~~qV~lLl~~~~~~~AL~~Ai~S~D~dLI~~vll~l~~~l~~~~f~~~l~~ 583 (839)
|||++||.+|+++||++||++||++||++++|||+||+||+++.||.+|++||||||||+||+||+++++.++|+++|.+
T Consensus 1 IS~a~IA~~A~~~GR~~LA~~LL~~Ep~~~~qVplLL~m~e~e~AL~kAi~SgD~DLi~~vLl~L~~~l~~s~f~~il~~ 80 (319)
T PF04840_consen 1 ISYAEIARKAYEEGRPKLATKLLELEPRASKQVPLLLKMGEDELALNKAIESGDTDLIYLVLLHLKRKLSLSQFFKILNQ 80 (319)
T ss_pred CCHHHHHHHHHHcChHHHHHHHHHcCCChHHHHHHHhcCCchHHHHHHHHHcCCccHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHhhhhhccccchH
Q 003205 584 RPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEKAHSLFSETKEHTFE 663 (839)
Q Consensus 584 ~p~a~~~~~~y~~~~~~~~L~~~~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~~~~~~~k~~~L~~a~~~~~~~~~~~f~ 663 (839)
+|.|.++|..|||+++++.|.+||+|+|++.++|.+.++++++..+.+ +|.+.|++|.+.|++.+++.|+
T Consensus 81 ~p~a~~l~~~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~~~~~~----------~~~~~L~~a~~~y~~~k~~~f~ 150 (319)
T PF04840_consen 81 NPVASNLYKKYCREQDRELLKDFYYQEDRFQELANLHLQEALSQKDVE----------EKISFLKQAQKLYSKSKNDAFE 150 (319)
T ss_pred CcchHHHHHHHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHhCCChH----------HHHHHHHHHHHHHHhcchhHHH
Confidence 999999999999999999999999999999999999999999887777 8999999999999999988999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccCCCHHHHHHHHHHcCCcchHHhHHhHcCCChHHHHHHHHHHHHhCCChhHHHH
Q 003205 664 SKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALER 743 (839)
Q Consensus 664 ~~~~~~~~~Ll~~Q~~Le~~~~~~~f~~~Sl~~ti~~l~~~~~~k~a~~l~k~fkvsdkr~~~~kl~ala~~~~w~~L~~ 743 (839)
++++++|++|+++|.+|+++++. +|+|+||++||++|+.+|+.+.|++|+++||||||||||+||++||++++|++|++
T Consensus 151 ~~~~e~q~~Ll~~Q~~Le~~~~~-~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~ 229 (319)
T PF04840_consen 151 AKLIEEQIKLLEYQKELEEKYNT-NFVGLSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEK 229 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-chhcCCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHH
Confidence 99999999999999999999986 79999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCchHHHHHHHhcCCHHHHHHhhccCCCHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHHhcCChh--
Q 003205 744 FSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIGMAKEAADAASQAKDGELLGRLKLTFAQNAA-- 821 (839)
Q Consensus 744 f~~~KKspIgyepfv~~~~~~~~~~ea~~yI~~i~d~~~r~~~~~~~~~~~~A~~~a~~~kd~~~L~~i~~~~~~~~~-- 821 (839)
|+++|||||||+|||++|+++|++.||.+||++|++ ++|++||++||+|.+|+++|++.||.+.|..|+++||++++
T Consensus 230 fa~skKsPIGyepFv~~~~~~~~~~eA~~yI~k~~~-~~rv~~y~~~~~~~~A~~~A~~~kd~~~L~~i~~~~~~~~~~~ 308 (319)
T PF04840_consen 230 FAKSKKSPIGYEPFVEACLKYGNKKEASKYIPKIPD-EERVEMYLKCGDYKEAAQEAFKEKDIDLLKQILKRCPGNNDQL 308 (319)
T ss_pred HHhCCCCCCChHHHHHHHHHCCCHHHHHHHHHhCCh-HHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHHHHCCCCChHH
Confidence 999999999999999999999999999999999996 99999999999999999999999999999999999987653
Q ss_pred HHHHHHHHHH
Q 003205 822 ASSIFDTLRD 831 (839)
Q Consensus 822 ~~~~i~~~~~ 831 (839)
..+.|++|++
T Consensus 309 ~~~~i~~~~~ 318 (319)
T PF04840_consen 309 IADKIEQMLA 318 (319)
T ss_pred HHHHHHHHHh
Confidence 3345666554
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=1.9e-21 Score=204.77 Aligned_cols=256 Identities=14% Similarity=0.120 Sum_probs=209.4
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCC---eEEEEEeCC
Q 003205 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQ---TLICVVQDG 108 (839)
Q Consensus 33 l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de---~Lv~v~~dG 108 (839)
-....+++|++|..||+.+ ..+++++|+ .+++++.++.+|. +++.++.|.|.. .+++++.||
T Consensus 176 rPis~~~fS~ds~~laT~s------------wsG~~kvW~~~~~~~~~~l~gH~--~~v~~~~fhP~~~~~~lat~s~Dg 241 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGS------------WSGLVKVWSVPQCNLLQTLRGHT--SRVGAAVFHPVDSDLNLATASADG 241 (459)
T ss_pred CcceeeEeecCCCeEEEee------------cCCceeEeecCCcceeEEEeccc--cceeeEEEccCCCccceeeeccCC
Confidence 3445889999999999986 789999999 6999999999999 999999999973 589999999
Q ss_pred eEEEEeCCC-CccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCceEEEcCCCCCCCCCceEEEeCCC
Q 003205 109 TVYRYNIHA-ELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAVIEPK 186 (839)
Q Consensus 109 tv~l~~~~G-~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~ 186 (839)
+|++|++.+ +.+...-|| ..+|..++|.|+|..+.|.+.+ -|.+|+++......+ ...|+-.|.+..
T Consensus 242 tvklw~~~~e~~l~~l~gH-----~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~------QEGHs~~v~~ia 310 (459)
T KOG0272|consen 242 TVKLWKLSQETPLQDLEGH-----LARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL------QEGHSKGVFSIA 310 (459)
T ss_pred ceeeeccCCCcchhhhhcc-----hhhheeeeecCCCceeeecccccchhhcccccchhhHh------hcccccccceeE
Confidence 999999887 457778899 6789999999999999999986 588998875432222 123333444456
Q ss_pred CCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCC---
Q 003205 187 YTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCES--- 258 (839)
Q Consensus 187 ~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~--- 258 (839)
|.+||.+.++.+.|..-.+||...-. .+|..+|..|+|||||.+||+++.|++.+||+--..+.+.....++
T Consensus 311 f~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlV 390 (459)
T KOG0272|consen 311 FQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLV 390 (459)
T ss_pred ecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchh
Confidence 77799999999999999999977432 5799999999999999999999999999999876666655444442
Q ss_pred ---CCCC---CceeeecCceEEEEecC-----EEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEcc
Q 003205 259 ---ALPP---EQIAWCGMDSVLLYWND-----MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSN 313 (839)
Q Consensus 259 ---~~~p---~~~~WcG~d~vv~~~~~-----~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit~ 313 (839)
...| .-++=||-|+++..|.. .-.|.||.+. ++.++||+..++++..|- +|+|+.
T Consensus 391 S~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 391 SQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP 459 (459)
T ss_pred hheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence 1112 35566789999999975 3579999997 888999999999999995 999864
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=3.3e-19 Score=185.50 Aligned_cols=255 Identities=15% Similarity=0.161 Sum_probs=185.2
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC-CceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCe
Q 003205 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-VLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGT 109 (839)
Q Consensus 32 ~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G-~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGt 109 (839)
.-....++|||+|..+|+.+ .|.|+|+|+.+- +++.+++.|. ..|.+++|||||+ +++++.||+
T Consensus 115 ~e~Vl~~~fsp~g~~l~tGs------------GD~TvR~WD~~TeTp~~t~KgH~--~WVlcvawsPDgk~iASG~~dg~ 180 (480)
T KOG0271|consen 115 GEAVLSVQFSPTGSRLVTGS------------GDTTVRLWDLDTETPLFTCKGHK--NWVLCVAWSPDGKKIASGSKDGS 180 (480)
T ss_pred CCcEEEEEecCCCceEEecC------------CCceEEeeccCCCCcceeecCCc--cEEEEEEECCCcchhhccccCCe
Confidence 33556899999999999875 699999999754 6899999999 9999999999998 689999999
Q ss_pred EEEEeC-CCCc-cccCCCCCccccccCeE-----------------------EEEEEC--CeEEEEecCCeE--------
Q 003205 110 VYRYNI-HAEL-IEPNASMGKECFEENVV-----------------------ECVFWG--NGVVCVTEANRY-------- 154 (839)
Q Consensus 110 v~l~~~-~G~~-~~~~~g~~~~~~~~~V~-----------------------~~~~~~--~G~v~~t~~~~~-------- 154 (839)
|++||. .|+. -..+.||. ..|. +++||+ .|..+++.++|-
T Consensus 181 I~lwdpktg~~~g~~l~gH~-----K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrw 255 (480)
T KOG0271|consen 181 IRLWDPKTGQQIGRALRGHK-----KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRW 255 (480)
T ss_pred EEEecCCCCCcccccccCcc-----cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEE
Confidence 999984 4544 55566663 1222 456665 444555544432
Q ss_pred --------------EEEecCCCce-EEEcCCCCCCCCCceEEE-e--C-------CCCCCCC------------------
Q 003205 155 --------------FCMADFATMK-VCELARPEVEELPHCVAV-I--E-------PKYTMTG------------------ 191 (839)
Q Consensus 155 --------------~~v~~~~~~~-~~~l~~~~~~~~~~~w~v-i--~-------~~~S~~~------------------ 191 (839)
+.||...... .+. + ....+|.- + + -.|.|.|
T Consensus 256 GG~gliySgS~DrtIkvw~a~dG~~~r~-----l-kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~ 329 (480)
T KOG0271|consen 256 GGEGLIYSGSQDRTIKVWRALDGKLCRE-----L-KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE 329 (480)
T ss_pred cCCceEEecCCCceEEEEEccchhHHHh-----h-cccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence 1222211110 111 1 12233410 1 1 1133333
Q ss_pred -------cEEEEEEeCCeEEEEecCCcc------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCC
Q 003205 192 -------SVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCES 258 (839)
Q Consensus 192 -------~~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~ 258 (839)
..+|..+.|.|+++|+..... .+|+.-|++++|||||++||+++-|..+++|+.+-++.+..|..+.
T Consensus 330 ~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv 409 (480)
T KOG0271|consen 330 AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHV 409 (480)
T ss_pred HhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcc
Confidence 358999999999999977543 5788999999999999999999999999999999899999998884
Q ss_pred CCCCCceeeec---------CceEEEEecC-----EEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEc
Q 003205 259 ALPPEQIAWCG---------MDSVLLYWND-----MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILS 312 (839)
Q Consensus 259 ~~~p~~~~WcG---------~d~vv~~~~~-----~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit 312 (839)
....|++|.. .|+++..|+- ..-|.|+..+ .+.|.+||..+..+..|- +|+|+
T Consensus 410 -~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 410 -AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 5789999974 4677777763 2347778777 788889999999988885 88875
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.75 E-value=3.6e-16 Score=155.03 Aligned_cols=254 Identities=14% Similarity=0.142 Sum_probs=188.3
Q ss_pred ccccccEEeeccccccccCCCCCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CC--CceeEEEecCC
Q 003205 10 WQLVYNRYYRKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AG--VLISETVWKNP 86 (839)
Q Consensus 10 W~~Lg~~~yr~~e~y~m~w~~~~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G--~ll~ti~~~~~ 86 (839)
|+.+..+.||...-. |.......+.|+++.+|.+. .+.||+|+. +| +++.++..|.
T Consensus 25 Wqa~tG~C~rTiqh~-------dsqVNrLeiTpdk~~LAaa~-------------~qhvRlyD~~S~np~Pv~t~e~h~- 83 (311)
T KOG0315|consen 25 WQALTGICSRTIQHP-------DSQVNRLEITPDKKDLAAAG-------------NQHVRLYDLNSNNPNPVATFEGHT- 83 (311)
T ss_pred eehhcCeEEEEEecC-------ccceeeEEEcCCcchhhhcc-------------CCeeEEEEccCCCCCceeEEeccC-
Confidence 777777777763322 56778999999999999986 588999994 44 3799999998
Q ss_pred CCCeEEEeecCCCeE-EEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEec--CCeEEEEecCCCc
Q 003205 87 GGRLIGMSWSEDQTL-ICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTE--ANRYFCMADFATM 163 (839)
Q Consensus 87 ~~~I~~~~fs~de~L-v~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~--~~~~~~v~~~~~~ 163 (839)
.+|..++|-.||+. .+.++|||+|||++..-..+-.+.+ ...|.++.+.|+---++++ +++++ ||++...
T Consensus 84 -kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~-----~spVn~vvlhpnQteLis~dqsg~ir-vWDl~~~ 156 (311)
T KOG0315|consen 84 -KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH-----NSPVNTVVLHPNQTELISGDQSGNIR-VWDLGEN 156 (311)
T ss_pred -CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC-----CCCcceEEecCCcceEEeecCCCcEE-EEEccCC
Confidence 99999999999995 7999999999999875334444545 5578899999965555555 45665 4444322
Q ss_pred --eEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----------cccCCCceEEEECCCCcE
Q 003205 164 --KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----------KVDDTLSQKMAVSPNGNF 230 (839)
Q Consensus 164 --~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----------~~~~~~i~~ia~Spng~~ 230 (839)
....+|+ .+......+|.+ ||++++-+..-|+.|+|+..+.+ +.+.+.+.+.-+||++++
T Consensus 157 ~c~~~liPe--~~~~i~sl~v~~-----dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~ 229 (311)
T KOG0315|consen 157 SCTHELIPE--DDTSIQSLTVMP-----DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKY 229 (311)
T ss_pred ccccccCCC--CCcceeeEEEcC-----CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcE
Confidence 2333443 112344454443 99999999999999999987643 357788999999999999
Q ss_pred EEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCC--ceEeccCCCeEEeecCCc-
Q 003205 231 VACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAE--PVQYFYDEPLVLIPECDG- 307 (839)
Q Consensus 231 iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~--~v~f~~~~~~~l~~E~DG- 307 (839)
||+.+.|.|++||++|-- .-.| +.+-|++.. -..|+-|+..++..+.|+
T Consensus 230 lat~ssdktv~iwn~~~~-~kle---------------------------~~l~gh~rWvWdc~FS~dg~YlvTassd~~ 281 (311)
T KOG0315|consen 230 LATCSSDKTVKIWNTDDF-FKLE---------------------------LVLTGHQRWVWDCAFSADGEYLVTASSDHT 281 (311)
T ss_pred EEeecCCceEEEEecCCc-eeeE---------------------------EEeecCCceEEeeeeccCccEEEecCCCCc
Confidence 999999999999997611 1112 233333332 355777888899999998
Q ss_pred eEEEccCcceeeeccchhh
Q 003205 308 VRILSNSSMEFLQRVPAST 326 (839)
Q Consensus 308 vRIit~~~~~~l~~Vp~~~ 326 (839)
+|+|+....+-++.-+++.
T Consensus 282 ~rlW~~~~~k~v~qy~gh~ 300 (311)
T KOG0315|consen 282 ARLWDLSAGKEVRQYQGHH 300 (311)
T ss_pred eeecccccCceeeecCCcc
Confidence 9999999888777766654
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.71 E-value=2.8e-16 Score=177.66 Aligned_cols=199 Identities=16% Similarity=0.138 Sum_probs=148.0
Q ss_pred ceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeCCCCc-cccCCCCCccccccCeEEEEEECCeEEEEecCCe-
Q 003205 77 LISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAEL-IEPNASMGKECFEENVVECVFWGNGVVCVTEANR- 153 (839)
Q Consensus 77 ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~G~~-~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~- 153 (839)
...++.+|+ |+|.+..|+|+.+ |++.++|++||+|++.-.- .....|| ...||+++|.|.|.-++|.+++
T Consensus 443 ~~~~L~GH~--GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH-----~~PVwdV~F~P~GyYFatas~D~ 515 (707)
T KOG0263|consen 443 TSRTLYGHS--GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGH-----LAPVWDVQFAPRGYYFATASHDQ 515 (707)
T ss_pred eeEEeecCC--CceeeeeecccccceeeccCCcceeeeecccceeEEEecCC-----CcceeeEEecCCceEEEecCCCc
Confidence 344578898 9999999999988 6899999999999875332 3334488 6789999999999999999875
Q ss_pred EEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecC-Ccc----cccCCCceEEEECCCC
Q 003205 154 YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED-GVQ----KVDDTLSQKMAVSPNG 228 (839)
Q Consensus 154 ~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~-~~~----~~~~~~i~~ia~Spng 228 (839)
...+|..+...+.++--..+ +...|- .|.|++..++..+.|.||.+||.. |.. .+|.+||..++|||+|
T Consensus 516 tArLWs~d~~~PlRifaghl-sDV~cv-----~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~G 589 (707)
T KOG0263|consen 516 TARLWSTDHNKPLRIFAGHL-SDVDCV-----SFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCG 589 (707)
T ss_pred eeeeeecccCCchhhhcccc-cccceE-----EECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCC
Confidence 34555544333333321112 344543 456699999999999999999966 443 6899999999999999
Q ss_pred cEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCCceEeccCCCeEEeecCCc-
Q 003205 229 NFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDG- 307 (839)
Q Consensus 229 ~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~~~l~~E~DG- 307 (839)
++||+++.+|.|.||+..-++.+.++..+ ..+.. +++|++|+.++++...|.
T Consensus 590 r~LaSg~ed~~I~iWDl~~~~~v~~l~~H-t~ti~--------------------------SlsFS~dg~vLasgg~Dns 642 (707)
T KOG0263|consen 590 RYLASGDEDGLIKIWDLANGSLVKQLKGH-TGTIY--------------------------SLSFSRDGNVLASGGADNS 642 (707)
T ss_pred ceEeecccCCcEEEEEcCCCcchhhhhcc-cCcee--------------------------EEEEecCCCEEEecCCCCe
Confidence 99999999999999987766666555544 22222 566667777777777775
Q ss_pred eEEEccCc
Q 003205 308 VRILSNSS 315 (839)
Q Consensus 308 vRIit~~~ 315 (839)
||+|+-..
T Consensus 643 V~lWD~~~ 650 (707)
T KOG0263|consen 643 VRLWDLTK 650 (707)
T ss_pred EEEEEchh
Confidence 77775543
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.71 E-value=1e-15 Score=154.24 Aligned_cols=235 Identities=12% Similarity=0.147 Sum_probs=181.4
Q ss_pred CCceEEEEc------CCCCceeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeEEEEeCC-CCccccCCCCCccccccCe
Q 003205 64 ALRKLRIFN------SAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNIH-AELIEPNASMGKECFEENV 135 (839)
Q Consensus 64 ~~~~I~iy~------~~G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv~l~~~~-G~~~~~~~g~~~~~~~~~V 135 (839)
.|.+|-+|. ..|.++..+.+|. ..|-++.-++||+. ++++.||++|+||+. |+-.+.+.|| ...|
T Consensus 36 rDk~ii~W~L~~dd~~~G~~~r~~~GHs--H~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH-----~~dV 108 (315)
T KOG0279|consen 36 RDKTIIVWKLTSDDIKYGVPVRRLTGHS--HFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGH-----TKDV 108 (315)
T ss_pred cceEEEEEEeccCccccCceeeeeeccc--eEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEec-----CCce
Confidence 577787885 4578899999998 89999999999997 799999999999975 4667778899 7789
Q ss_pred EEEEEECCeEEEEecCCe-EEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCC--CcEEEEEEeCCeEEEEecCCcc
Q 003205 136 VECVFWGNGVVCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMT--GSVEVLIGTDAGILMLDEDGVQ 212 (839)
Q Consensus 136 ~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~--~~~~v~~s~d~tv~l~~~~~~~ 212 (839)
..+.|+++.-.++|++.+ -..+||.-+.....+.+ ...+.| |....|||+ .-+++.++.|++|++||.++++
T Consensus 109 lsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~----~~~~~W-VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~ 183 (315)
T KOG0279|consen 109 LSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHE----DSHREW-VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ 183 (315)
T ss_pred EEEEecCCCceeecCCCcceeeeeeecccEEEEEec----CCCcCc-EEEEEEcCCCCCcEEEEccCCceEEEEccCCcc
Confidence 999999988899998875 56778776554444443 122567 333467777 5688888899999999999997
Q ss_pred -----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeee--------cCceEEEEecC
Q 003205 213 -----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC--------GMDSVLLYWND 279 (839)
Q Consensus 213 -----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~Wc--------G~d~vv~~~~~ 279 (839)
.+|.+.++.+++||||..+|+++.||++.+|+-+-++.+..++.. .+...+++. +-++-+..|+-
T Consensus 184 l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~--~~v~sl~fspnrywL~~at~~sIkIwdl 261 (315)
T KOG0279|consen 184 LRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF--DIVNSLCFSPNRYWLCAATATSIKIWDL 261 (315)
T ss_pred hhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC--CeEeeEEecCCceeEeeccCCceEEEec
Confidence 578899999999999999999999999999998767776444332 244455543 33334666763
Q ss_pred ---------EEEEEcC-----CCC--ceEeccCCCeEEeecCCc-eEEEc
Q 003205 280 ---------MLVMVAP-----QAE--PVQYFYDEPLVLIPECDG-VRILS 312 (839)
Q Consensus 280 ---------~l~lig~-----~~~--~v~f~~~~~~~l~~E~DG-vRIit 312 (839)
.+-++|| ... +..|+.||...+..-.|| ||+|-
T Consensus 262 ~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 262 ESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred cchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 3567777 222 677888899999999997 88874
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.68 E-value=2.6e-16 Score=166.20 Aligned_cols=196 Identities=13% Similarity=0.118 Sum_probs=161.3
Q ss_pred EEEEcCC--CCeEEEEecCchhhhhhcccCCceEEEEcCCC-CceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEE
Q 003205 37 KVACAPF--GGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-VLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYR 112 (839)
Q Consensus 37 ~va~sp~--Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G-~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l 112 (839)
.+.+.|. +-.||+.. .|+++++|..++ .+|..+.+|. .+|..+.|.|+|+ |++++-|-|-|+
T Consensus 222 ~~~fhP~~~~~~lat~s------------~Dgtvklw~~~~e~~l~~l~gH~--~RVs~VafHPsG~~L~TasfD~tWRl 287 (459)
T KOG0272|consen 222 AAVFHPVDSDLNLATAS------------ADGTVKLWKLSQETPLQDLEGHL--ARVSRVAFHPSGKFLGTASFDSTWRL 287 (459)
T ss_pred eEEEccCCCccceeeec------------cCCceeeeccCCCcchhhhhcch--hhheeeeecCCCceeeecccccchhh
Confidence 4555664 34555554 799999999999 8999999998 9999999999998 689999999999
Q ss_pred EeCC-CCccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCC
Q 003205 113 YNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMT 190 (839)
Q Consensus 113 ~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~ 190 (839)
||+. +...-..-|| ..+|.++.|.++|-+++|+..+ +-.||++.+.+...+-. + |.=.|....|||+
T Consensus 288 WD~~tk~ElL~QEGH-----s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~----g--H~k~I~~V~fsPN 356 (459)
T KOG0272|consen 288 WDLETKSELLLQEGH-----SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA----G--HIKEILSVAFSPN 356 (459)
T ss_pred cccccchhhHhhccc-----ccccceeEecCCCceeeccCccchhheeecccCcEEEEec----c--cccceeeEeECCC
Confidence 9974 4445567789 6789999999999999999876 56788887666655432 1 3334666689999
Q ss_pred CcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECC-CCcEEEEeecCCeEEEEecCCCCccccccCC
Q 003205 191 GSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSP-NGNFVACFTHDGRLVVNNTNFSSPVIDESCE 257 (839)
Q Consensus 191 ~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Sp-ng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~ 257 (839)
|..+++.+.|+++++||+.... +.|..-|+.|.||| .|.+|++.+.|++++||++.--+.+.....+
T Consensus 357 Gy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH 429 (459)
T KOG0272|consen 357 GYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH 429 (459)
T ss_pred ceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC
Confidence 9999999999999999999765 67888899999999 8899999999999999998766666555555
No 10
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=5.2e-15 Score=148.66 Aligned_cols=250 Identities=16% Similarity=0.146 Sum_probs=172.2
Q ss_pred CCCEEEEcCC-CCeEEEEecCchhhhhhcccCCceEEEEcCCC-CceeE---E-EecCCCCCeEEEeecCCCe-EEEEEe
Q 003205 34 SRNKVACAPF-GGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-VLISE---T-VWKNPGGRLIGMSWSEDQT-LICVVQ 106 (839)
Q Consensus 34 ~~~~va~sp~-Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G-~ll~t---i-~~~~~~~~I~~~~fs~de~-Lv~v~~ 106 (839)
+.+.+|..|- |-.+|+.+ .|+.|+||+..| .-... + ..|+ ..|.+++|+|.|+ |++++-
T Consensus 16 r~W~~awhp~~g~ilAscg------------~Dk~vriw~~~~~~s~~ck~vld~~hk--rsVRsvAwsp~g~~La~aSF 81 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCG------------TDKAVRIWSTSSGDSWTCKTVLDDGHK--RSVRSVAWSPHGRYLASASF 81 (312)
T ss_pred cEEEEEeccCCceEEEeec------------CCceEEEEecCCCCcEEEEEeccccch--heeeeeeecCCCcEEEEeec
Confidence 5679999998 77788876 689999999884 32221 1 1344 6799999999998 589999
Q ss_pred CCeEEEE-eCCCCc--cccCCCCCccccccCeEEEEEECCeEEEEecCCe--EEEEecCCC-ceEEEcCCCCCCCCCceE
Q 003205 107 DGTVYRY-NIHAEL--IEPNASMGKECFEENVVECVFWGNGVVCVTEANR--YFCMADFAT-MKVCELARPEVEELPHCV 180 (839)
Q Consensus 107 dGtv~l~-~~~G~~--~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~--~~~v~~~~~-~~~~~l~~~~~~~~~~~w 180 (839)
|+|+-+| +-+|+| ..+.-|| +..|-.+.++.+|-.++|-+.+ +|.+. +.+ ......+- + ++|.=
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGH-----EnEVK~Vaws~sG~~LATCSRDKSVWiWe-~deddEfec~aV--L--~~Htq 151 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGH-----ENEVKCVAWSASGNYLATCSRDKSVWIWE-IDEDDEFECIAV--L--QEHTQ 151 (312)
T ss_pred cceEEEeecCCCceeEEeeeecc-----ccceeEEEEcCCCCEEEEeeCCCeEEEEE-ecCCCcEEEEee--e--ccccc
Confidence 9999999 578887 6778899 6779999999999999997653 45443 221 11111110 1 11111
Q ss_pred EEeCCCCCCCCcEEEEEEeCCeEEEEecC-Ccc-------cccCCCceEEEECCCCcEEEEeecCCeEEEEe--cCCCCc
Q 003205 181 AVIEPKYTMTGSVEVLIGTDAGILMLDED-GVQ-------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN--TNFSSP 250 (839)
Q Consensus 181 ~vi~~~~S~~~~~~v~~s~d~tv~l~~~~-~~~-------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~s--sd~~~~ 250 (839)
.|-...+.|+..+++..++|+||++|... +.. .++.+.|..++|+|+|..+++.++|+++.||. .+....
T Consensus 152 DVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~ 231 (312)
T KOG0645|consen 152 DVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGM 231 (312)
T ss_pred cccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchh
Confidence 12111255688999999999999999766 331 56677899999999999999999999999996 442222
Q ss_pred cccccCCCCCCCCceeee--------cCceEEEEecC------EE----EEEcCCC-C--ceEeccC-CCeEEeecCCc-
Q 003205 251 VIDESCESALPPEQIAWC--------GMDSVLLYWND------ML----VMVAPQA-E--PVQYFYD-EPLVLIPECDG- 307 (839)
Q Consensus 251 l~e~~~~~~~~p~~~~Wc--------G~d~vv~~~~~------~l----~lig~~~-~--~v~f~~~-~~~~l~~E~DG- 307 (839)
+ +.....+.|| |++++++.-+. .. ..-|..+ + +|.|.+. ...+++..-||
T Consensus 232 ------~-sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~ 304 (312)
T KOG0645|consen 232 ------H-SRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGI 304 (312)
T ss_pred ------c-ccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCce
Confidence 1 3456678998 56666554332 11 1222222 2 7888875 44556666779
Q ss_pred eEEEccC
Q 003205 308 VRILSNS 314 (839)
Q Consensus 308 vRIit~~ 314 (839)
||+|...
T Consensus 305 v~~W~l~ 311 (312)
T KOG0645|consen 305 VNFWELE 311 (312)
T ss_pred EEEEEec
Confidence 9998653
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.65 E-value=2.7e-14 Score=160.12 Aligned_cols=286 Identities=14% Similarity=0.121 Sum_probs=190.3
Q ss_pred cccccccccccE------Eee-ccccccccCCCCCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCC
Q 003205 5 SVAAEWQLVYNR------YYR-KPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGV 76 (839)
Q Consensus 5 ~~~~~W~~Lg~~------~yr-~~e~y~m~w~~~~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ 76 (839)
|-+++|..+|-. .|. ..|.|=|.-..--.+...++.||+|+.||+.. .|+.|+||| .+|.
T Consensus 316 N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~------------eDgKVKvWn~~Sgf 383 (893)
T KOG0291|consen 316 NSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGA------------EDGKVKVWNTQSGF 383 (893)
T ss_pred cccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEecc------------CCCcEEEEeccCce
Confidence 557889877541 121 12344333211133556899999999999986 589999999 5889
Q ss_pred ceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeCC-C-CccccCCCCCccccccCeEEEEEECCeEEEEecCCe
Q 003205 77 LISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIH-A-ELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR 153 (839)
Q Consensus 77 ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~-G-~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~ 153 (839)
=+-|+.-|. ..|.++.|+..++ +++.+-|||||.||+. + +|.+|..+. ...-.++.+=+.|-++..++.+
T Consensus 384 C~vTFteHt--s~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~-----p~QfscvavD~sGelV~AG~~d 456 (893)
T KOG0291|consen 384 CFVTFTEHT--SGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE-----PIQFSCVAVDPSGELVCAGAQD 456 (893)
T ss_pred EEEEeccCC--CceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCC-----ceeeeEEEEcCCCCEEEeeccc
Confidence 999999888 9999999999998 6899999999999974 3 346665544 3334455556679999988776
Q ss_pred E--EEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECC
Q 003205 154 Y--FCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSP 226 (839)
Q Consensus 154 ~--~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Sp 226 (839)
. +.||+++..+...+-. +=.++.++. .|||+|+.++.++.|.||.+|+.-+.. .....-+..++|+|
T Consensus 457 ~F~IfvWS~qTGqllDiLs-GHEgPVs~l-----~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrP 530 (893)
T KOG0291|consen 457 SFEIFVWSVQTGQLLDILS-GHEGPVSGL-----SFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRP 530 (893)
T ss_pred eEEEEEEEeecCeeeehhc-CCCCcceee-----EEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcC
Confidence 3 4678876544322211 000222332 467799999999999999999977652 23456689999999
Q ss_pred CCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCCceEeccCCCeEEeecCC
Q 003205 227 NGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECD 306 (839)
Q Consensus 227 ng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~~~l~~E~D 306 (839)
+|+-||..|-||.|-+|++.-.-.....++..+..+--. .+|.+... +. -.|-.=.++.|++||..++....-
T Consensus 531 dG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~---~~D~~ta~-~s---a~~K~Ftti~ySaDG~~IlAgG~s 603 (893)
T KOG0291|consen 531 DGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRK---ETDRITAE-NS---AKGKTFTTICYSADGKCILAGGES 603 (893)
T ss_pred CCCeEEEEEecceEEEEEhhhceeeccccchhhcccccc---ccceeehh-hc---ccCCceEEEEEcCCCCEEEecCCc
Confidence 999999999999999998763333322222111000000 01111110 00 001111278899999988776655
Q ss_pred -ceEEEccCcceeeecc
Q 003205 307 -GVRILSNSSMEFLQRV 322 (839)
Q Consensus 307 -GvRIit~~~~~~l~~V 322 (839)
-|.|++-...-+|++.
T Consensus 604 n~iCiY~v~~~vllkkf 620 (893)
T KOG0291|consen 604 NSICIYDVPEGVLLKKF 620 (893)
T ss_pred ccEEEEECchhheeeeE
Confidence 5999988877777665
No 12
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=2e-15 Score=157.56 Aligned_cols=273 Identities=12% Similarity=0.087 Sum_probs=206.1
Q ss_pred CCceEEEEcCCCCc--------eeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeCCCCc-cccCCCCCcccccc
Q 003205 64 ALRKLRIFNSAGVL--------ISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAEL-IEPNASMGKECFEE 133 (839)
Q Consensus 64 ~~~~I~iy~~~G~l--------l~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~G~~-~~~~~g~~~~~~~~ 133 (839)
.+-...||.+.-.. -++|.+|. +.|+++.|+|++. |++++.|.|+|+||+.-+- ..+--|| ..
T Consensus 86 e~~l~lvyqpqavfrvrpvtrCssS~~GH~--e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH-----~~ 158 (480)
T KOG0271|consen 86 EDVLTLVYQPQAVFRVRPVTRCSSSIAGHG--EAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGH-----KN 158 (480)
T ss_pred hheeeEEeccchhhcccccceeccccCCCC--CcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCC-----cc
Confidence 45555677765532 24588898 9999999999986 8999999999999976443 5667788 78
Q ss_pred CeEEEEEECCeEEEEecCCe-EEEEecCC--CceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCC
Q 003205 134 NVVECVFWGNGVVCVTEANR-YFCMADFA--TMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDG 210 (839)
Q Consensus 134 ~V~~~~~~~~G~v~~t~~~~-~~~v~~~~--~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~ 210 (839)
.|..+..+|||..++++..+ -+.+||-+ ++..+.|+... ..+.+.+.-|-.-.|....++..+.||++.+||...
T Consensus 159 WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~--K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~ 236 (480)
T KOG0271|consen 159 WVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHK--KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL 236 (480)
T ss_pred EEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcc--cceeEEeecccccCCCccceecccCCCCEEEEEccC
Confidence 89999999999999998653 34556533 12233332110 112222222334455677888899999999999987
Q ss_pred cc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCC------------------------C--
Q 003205 211 VQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCES------------------------A-- 259 (839)
Q Consensus 211 ~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~------------------------~-- 259 (839)
.. .+|..+|+.|..--+| +|++++.|+||++|...-+....++..+. .
T Consensus 237 ~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~ 315 (480)
T KOG0271|consen 237 GTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPK 315 (480)
T ss_pred ceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCC
Confidence 43 6899999999998887 99999999999999865444443333221 0
Q ss_pred ------------------CCCCceeeecCceEEEEecC------EEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEc
Q 003205 260 ------------------LPPEQIAWCGMDSVLLYWND------MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILS 312 (839)
Q Consensus 260 ------------------~~p~~~~WcG~d~vv~~~~~------~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit 312 (839)
..|..|.=+.+|..+..|+. .-.|.||+.. .|.|++|+..+.+...|- ||+|.
T Consensus 316 ~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~ 395 (480)
T KOG0271|consen 316 SFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWD 395 (480)
T ss_pred ChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeee
Confidence 11234777789999999975 2379999886 899999999999999995 99999
Q ss_pred cCcceeeeccchhhHhhhccCCCChhhhHHHHHH
Q 003205 313 NSSMEFLQRVPASTEQIFAIGSTSPAALLYDALD 346 (839)
Q Consensus 313 ~~~~~~l~~Vp~~~~~vf~igS~~pga~L~~A~~ 346 (839)
...+.||..+-+|+..|+.+.=++++-+|+.+++
T Consensus 396 g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~Sk 429 (480)
T KOG0271|consen 396 GRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSK 429 (480)
T ss_pred CCCcchhhhhhhccceeEEEEeccCccEEEEcCC
Confidence 9999999999999999999998888888887764
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.62 E-value=3.1e-14 Score=152.46 Aligned_cols=214 Identities=15% Similarity=0.146 Sum_probs=153.0
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYR 112 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l 112 (839)
+...++.+.+|..+|+.. .++.++|||..|.+++++.-|. |+|.++.|+..|. +++.+-|||+.+
T Consensus 237 dVT~L~Wn~~G~~LatG~------------~~G~~riw~~~G~l~~tl~~Hk--gPI~slKWnk~G~yilS~~vD~ttil 302 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGS------------EDGEARIWNKDGNLISTLGQHK--GPIFSLKWNKKGTYILSGGVDGTTIL 302 (524)
T ss_pred CcceEEecCCCCeEEEee------------cCcEEEEEecCchhhhhhhccC--CceEEEEEcCCCCEEEeccCCccEEE
Confidence 345788999999999986 7999999999999999999999 9999999999986 789999999999
Q ss_pred Ee-CCCCcc-ccCCCCCcc---c---------------------------------cccCeEEEEEECCeEEEEecCCe-
Q 003205 113 YN-IHAELI-EPNASMGKE---C---------------------------------FEENVVECVFWGNGVVCVTEANR- 153 (839)
Q Consensus 113 ~~-~~G~~~-~~~~g~~~~---~---------------------------------~~~~V~~~~~~~~G~v~~t~~~~- 153 (839)
|| ..|+.. +|.+ |+.. + -+..|..+++.|.|.+++|.+.+
T Consensus 303 wd~~~g~~~q~f~~-~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~ 381 (524)
T KOG0273|consen 303 WDAHTGTVKQQFEF-HSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDG 381 (524)
T ss_pred EeccCceEEEeeee-ccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCC
Confidence 97 456542 2222 1111 0 04556667777789888887654
Q ss_pred EEEEecCCC-ceEEEcCCCCCCCCCc----eEEEeCC--CCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceE
Q 003205 154 YFCMADFAT-MKVCELARPEVEELPH----CVAVIEP--KYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQK 221 (839)
Q Consensus 154 ~~~v~~~~~-~~~~~l~~~~~~~~~~----~w~vi~~--~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ 221 (839)
-..+|+... .-...|-. +... .|.-..| ....++.+++.++.|+||.+||...-. ..|+.||.+
T Consensus 382 TlkiWs~~~~~~~~~l~~----Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVys 457 (524)
T KOG0273|consen 382 TLKIWSMGQSNSVHDLQA----HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYS 457 (524)
T ss_pred eeEeeecCCCcchhhhhh----hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEE
Confidence 244554321 11111110 0000 1211111 012255688889999999999977543 578999999
Q ss_pred EEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeee
Q 003205 222 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC 268 (839)
Q Consensus 222 ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~Wc 268 (839)
++|||||+++|+++.||.+.||+....+.+.++..+ .....+.|.
T Consensus 458 vafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~--~~Ifel~Wn 502 (524)
T KOG0273|consen 458 VAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT--GGIFELCWN 502 (524)
T ss_pred EEecCCCcEEEecCCCCeeEeccccchheeEeecCC--CeEEEEEEc
Confidence 999999999999999999999999888887766544 235677785
No 14
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.61 E-value=4.6e-14 Score=162.39 Aligned_cols=259 Identities=19% Similarity=0.206 Sum_probs=195.8
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCC--ceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCe
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGV--LISETVWKNPGGRLIGMSWSEDQT-LICVVQDGT 109 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~--ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGt 109 (839)
....+.+||+|..+|... .+++|++|+. .++ ++.++..|. ..|.++.|+||++ +++++.|++
T Consensus 161 sv~~~~fs~~g~~l~~~~------------~~~~i~~~~~~~~~~~~~~~l~~h~--~~v~~~~fs~d~~~l~s~s~D~t 226 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAAS------------SDGLIRIWKLEGIKSNLLRELSGHT--RGVSDVAFSPDGSYLLSGSDDKT 226 (456)
T ss_pred ceEEEEEcCCCCeEEEcc------------CCCcEEEeecccccchhhccccccc--cceeeeEECCCCcEEEEecCCce
Confidence 445689999999988875 6899999997 445 577777787 8899999999996 689999999
Q ss_pred EEEEeC-C-CCccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCce-EEEcCCCCCCCCCceEEEeCC
Q 003205 110 VYRYNI-H-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMK-VCELARPEVEELPHCVAVIEP 185 (839)
Q Consensus 110 v~l~~~-~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~-~~~l~~~~~~~~~~~w~vi~~ 185 (839)
+|+|+. . |...+...|| ...|.++.|.+.|..+++++.+ -..+|++.... ...|.. +... |..-
T Consensus 227 iriwd~~~~~~~~~~l~gH-----~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~----hs~~---is~~ 294 (456)
T KOG0266|consen 227 LRIWDLKDDGRNLKTLKGH-----STYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG----HSDG---ISGL 294 (456)
T ss_pred EEEeeccCCCeEEEEecCC-----CCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeec----cCCc---eEEE
Confidence 999987 3 4567788899 7889999999999888887664 46677776432 233321 1212 2222
Q ss_pred CCCCCCcEEEEEEeCCeEEEEecCCcc-------c-ccCC-CceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccC
Q 003205 186 KYTMTGSVEVLIGTDAGILMLDEDGVQ-------K-VDDT-LSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESC 256 (839)
Q Consensus 186 ~~S~~~~~~v~~s~d~tv~l~~~~~~~-------~-~~~~-~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~ 256 (839)
.|+++|+.++.++.|++|.+||..+.. . .... ++..+.|||||+++...+.|+++.+|+........++..
T Consensus 295 ~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~ 374 (456)
T KOG0266|consen 295 AFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG 374 (456)
T ss_pred EECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc
Confidence 677799999999999999999977432 1 1222 799999999999999999999999998776777767766
Q ss_pred CCCCCCCceeeecCceEEEEecCEEEEEcCCCCceEeccCCCeEEeecCCc-eEEEccCcceeeeccchh-hHhhhccCC
Q 003205 257 ESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPAS-TEQIFAIGS 334 (839)
Q Consensus 257 ~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~-~~~vf~igS 334 (839)
+... .+|....+ +...+..+++...|| |.+|...+...++++..+ ...+.....
T Consensus 375 ~~~~-----~~~~~~~~-------------------~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~ 430 (456)
T KOG0266|consen 375 HSNL-----VRCIFSPT-------------------LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSS 430 (456)
T ss_pred cCCc-----ceeEeccc-------------------ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceecccc
Confidence 5321 14433221 123567788889998 999999999999999999 666676665
Q ss_pred CChhhhHH
Q 003205 335 TSPAALLY 342 (839)
Q Consensus 335 ~~pga~L~ 342 (839)
.....++.
T Consensus 431 ~~~~~~~~ 438 (456)
T KOG0266|consen 431 HPTENLIA 438 (456)
T ss_pred CCCcCeee
Confidence 55554443
No 15
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.60 E-value=5.3e-13 Score=140.39 Aligned_cols=252 Identities=16% Similarity=0.186 Sum_probs=172.0
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC-CCceeEEEecCCCCCeEEEeecCCC-eEEEEEeCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISETVWKNPGGRLIGMSWSEDQ-TLICVVQDGTVY 111 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G~ll~ti~~~~~~~~I~~~~fs~de-~Lv~v~~dGtv~ 111 (839)
....++++|+|..+|+.. .++.|++|+.. |+.+..+..+. ..+..+.|+|++ .+++++.||+++
T Consensus 11 ~i~~~~~~~~~~~l~~~~------------~~g~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~~~~i~ 76 (289)
T cd00200 11 GVTCVAFSPDGKLLATGS------------GDGTIKVWDLETGELLRTLKGHT--GPVRDVAASADGTYLASGSSDKTIR 76 (289)
T ss_pred CEEEEEEcCCCCEEEEee------------cCcEEEEEEeeCCCcEEEEecCC--cceeEEEECCCCCEEEEEcCCCeEE
Confidence 455889999999999886 47999999974 55777787777 788899999998 478889999999
Q ss_pred EEeCCC-CccccCCCCCccccccCeEEEEEECCeEEEEecC-CeEEEEecCCCce-EEEcCCCCCCCCCceEEEeCCCCC
Q 003205 112 RYNIHA-ELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATMK-VCELARPEVEELPHCVAVIEPKYT 188 (839)
Q Consensus 112 l~~~~G-~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~-~~~~~v~~~~~~~-~~~l~~~~~~~~~~~w~vi~~~~S 188 (839)
+|++.+ +......+| ...|..+.+.++|..+++.. .....+++..... ...+.. ....+.+ + .++
T Consensus 77 i~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~i~~--~---~~~ 144 (289)
T cd00200 77 LWDLETGECVRTLTGH-----TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG--HTDWVNS--V---AFS 144 (289)
T ss_pred EEEcCcccceEEEecc-----CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc--CCCcEEE--E---EEc
Confidence 999765 344334445 45688888888776666654 3333455554322 222321 1011222 2 345
Q ss_pred CCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCC
Q 003205 189 MTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPE 263 (839)
Q Consensus 189 ~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~ 263 (839)
|++..++..+.++.|++|+..... ..+..++..++++|+|+.+++.+.+|.+.+|+....+.+.++..+ ...+.
T Consensus 145 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~ 223 (289)
T cd00200 145 PDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH-ENGVN 223 (289)
T ss_pred CcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc-CCceE
Confidence 577777776669999999987432 456678999999999999999999999999987756666555433 23566
Q ss_pred ceeeecC---------ceEEEEecC-----EEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEc
Q 003205 264 QIAWCGM---------DSVLLYWND-----MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILS 312 (839)
Q Consensus 264 ~~~WcG~---------d~vv~~~~~-----~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit 312 (839)
.+.|..+ |..+..|+- ...+.++.+. .+.|.+++..+++...|| ++||.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 224 SVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 6777643 444444432 1222333332 566777777788888887 87763
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.59 E-value=2.1e-13 Score=137.84 Aligned_cols=198 Identities=14% Similarity=0.094 Sum_probs=151.5
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCC-eEEEEEeCCeEEEE
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQ-TLICVVQDGTVYRY 113 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de-~Lv~v~~dGtv~l~ 113 (839)
..++++|+|...-..+ .|+++++|+. .|+....+.+|. ..|.+++|++|. ++++++.|.|+++|
T Consensus 67 ~dv~~s~dg~~alS~s------------wD~~lrlWDl~~g~~t~~f~GH~--~dVlsva~s~dn~qivSGSrDkTiklw 132 (315)
T KOG0279|consen 67 SDVVLSSDGNFALSAS------------WDGTLRLWDLATGESTRRFVGHT--KDVLSVAFSTDNRQIVSGSRDKTIKLW 132 (315)
T ss_pred cceEEccCCceEEecc------------ccceEEEEEecCCcEEEEEEecC--CceEEEEecCCCceeecCCCcceeeee
Confidence 4688999988766554 7999999996 558888899998 899999999976 58999999999999
Q ss_pred eCCCCccccCCCCCccccccCeEEEEEECC--eEEEEecCC-eEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCC
Q 003205 114 NIHAELIEPNASMGKECFEENVVECVFWGN--GVVCVTEAN-RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMT 190 (839)
Q Consensus 114 ~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~--G~v~~t~~~-~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~ 190 (839)
|.-|+..-+...+ .+ .+-|..++|+|+ -..+++.+. +...+||..+.+.. ..-.++... +..-.+|||
T Consensus 133 nt~g~ck~t~~~~-~~--~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~---~~~~gh~~~---v~t~~vSpD 203 (315)
T KOG0279|consen 133 NTLGVCKYTIHED-SH--REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR---TTFIGHSGY---VNTVTVSPD 203 (315)
T ss_pred eecccEEEEEecC-CC--cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh---hcccccccc---EEEEEECCC
Confidence 9988873322222 11 456889999996 667777665 46788887654322 211222222 222256779
Q ss_pred CcEEEEEEeCCeEEEEecCCcc----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCC
Q 003205 191 GSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCE 257 (839)
Q Consensus 191 ~~~~v~~s~d~tv~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~ 257 (839)
|...+..+.||.+++||.+... ..+..+|.+++||||--.||.++..+ |+||+.+-+.++.++..+
T Consensus 204 GslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 204 GSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKAVVEELKLD 273 (315)
T ss_pred CCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCc-eEEEeccchhhhhhcccc
Confidence 9999999999999999998654 67889999999999987788887654 999999988888777654
No 17
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.54 E-value=6.9e-14 Score=147.44 Aligned_cols=256 Identities=15% Similarity=0.172 Sum_probs=192.9
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEE-EecCCCCCeEEEeecCCCe-EEEEEeCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISET-VWKNPGGRLIGMSWSEDQT-LICVVQDGTVY 111 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti-~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~ 111 (839)
....|...|.|.-+.+.. .-+-..+||..+--..+| ..|. ..|.+|.||++|. ++++..+|.|+
T Consensus 98 ~V~~v~WtPeGRRLltgs------------~SGEFtLWNg~~fnFEtilQaHD--s~Vr~m~ws~~g~wmiSgD~gG~iK 163 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGS------------QSGEFTLWNGTSFNFETILQAHD--SPVRTMKWSHNGTWMISGDKGGMIK 163 (464)
T ss_pred ceeeEEEcCCCceeEeec------------ccccEEEecCceeeHHHHhhhhc--ccceeEEEccCCCEEEEcCCCceEE
Confidence 344666677777666664 467888998755444443 3355 7899999999998 68999999999
Q ss_pred EEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCC
Q 003205 112 RYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMT 190 (839)
Q Consensus 112 l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~ 190 (839)
+|...-+-.+.+..|. .+.|.+++|+++--.++|.+. ....||++..+...+. -..|.|.|-+.++.|.
T Consensus 164 yWqpnmnnVk~~~ahh----~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v------L~GHgwdVksvdWHP~ 233 (464)
T KOG0284|consen 164 YWQPNMNNVKIIQAHH----AEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV------LRGHGWDVKSVDWHPT 233 (464)
T ss_pred ecccchhhhHHhhHhh----hhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe------eccCCCCcceeccCCc
Confidence 9977655555566662 367999999997777777554 4678888875554332 1356688888888999
Q ss_pred CcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCce
Q 003205 191 GSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQI 265 (839)
Q Consensus 191 ~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~ 265 (839)
...++.++.|+.|++||..... ..|..-|.++.|+|||.+|++++.|..++++++..-+.+..|..+ ......+
T Consensus 234 kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H-kkdv~~~ 312 (464)
T KOG0284|consen 234 KGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH-KKDVTSL 312 (464)
T ss_pred cceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc-hhhheee
Confidence 9999999999999999987543 567888999999999999999999999999987633444455555 3356778
Q ss_pred eee----------cCceEEEEec----CEEEEEcCCCC----ceEeccCCCeEEeecCCc-eEEEccC
Q 003205 266 AWC----------GMDSVLLYWN----DMLVMVAPQAE----PVQYFYDEPLVLIPECDG-VRILSNS 314 (839)
Q Consensus 266 ~Wc----------G~d~vv~~~~----~~l~lig~~~~----~v~f~~~~~~~l~~E~DG-vRIit~~ 314 (839)
.|. |.|.-++.|. ..+-.+++.-+ +..|-+=|.++.....|- +|.|+..
T Consensus 313 ~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 313 TWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 886 7888888773 34556655444 566666688889999995 9999987
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.52 E-value=9.9e-13 Score=147.75 Aligned_cols=231 Identities=19% Similarity=0.219 Sum_probs=160.5
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC-CceeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeEEEE
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-VLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRY 113 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G-~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv~l~ 113 (839)
..+++..-|.+||+... .-+.+-||.-.- .-+-+-++|. .++.++++||||++ +++.+||+|++|
T Consensus 311 ~t~~~N~tGDWiA~g~~-----------klgQLlVweWqsEsYVlKQQgH~--~~i~~l~YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 311 LTVSFNSTGDWIAFGCS-----------KLGQLLVWEWQSESYVLKQQGHS--DRITSLAYSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred eEEEecccCCEEEEcCC-----------ccceEEEEEeeccceeeeccccc--cceeeEEECCCCcEEEeccCCCcEEEE
Confidence 45667777888888762 246788888443 3456667777 89999999999996 799999999999
Q ss_pred eCC-CCccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCC-ceEEEcCCCCCCCCCceEEEeCCCCCCC
Q 003205 114 NIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFAT-MKVCELARPEVEELPHCVAVIEPKYTMT 190 (839)
Q Consensus 114 ~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~-~~~~~l~~~~~~~~~~~w~vi~~~~S~~ 190 (839)
|.+ |-...++-.| ..+|..++|..+|.++++++.+ -+..|++.- -+-+++..|.- ..-+|.+| .| +
T Consensus 378 n~~SgfC~vTFteH-----ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p-~Qfscvav-D~----s 446 (893)
T KOG0291|consen 378 NTQSGFCFVTFTEH-----TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP-IQFSCVAV-DP----S 446 (893)
T ss_pred eccCceEEEEeccC-----CCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc-eeeeEEEE-cC----C
Confidence 854 5445555557 6789999999999999997643 123333331 23344433111 22344443 33 7
Q ss_pred CcEEEEEEeCC-eEEEEecC-Ccc----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCC--ccccccCCCCCCC
Q 003205 191 GSVEVLIGTDA-GILMLDED-GVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSS--PVIDESCESALPP 262 (839)
Q Consensus 191 ~~~~v~~s~d~-tv~l~~~~-~~~----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~--~l~e~~~~~~~~p 262 (839)
|.+++..+.|. .|++|+.+ |.. .+|.+||..++|||.|..||+++-|.|+++|+. |++ ...++...
T Consensus 447 GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~i-f~s~~~vEtl~i~----- 520 (893)
T KOG0291|consen 447 GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDI-FSSSGTVETLEIR----- 520 (893)
T ss_pred CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEe-eccCceeeeEeec-----
Confidence 88887777766 89999977 443 789999999999999999999999999999973 222 22111111
Q ss_pred CceeeecCceEEEEecCEEEEEcCCCCceEeccCCCeEEeecCCc-eEEEccCcceee
Q 003205 263 EQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDG-VRILSNSSMEFL 319 (839)
Q Consensus 263 ~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l 319 (839)
++.-.++|.|||.-+.++-.|| |-+|..+...-.
T Consensus 521 -----------------------sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 521 -----------------------SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred -----------------------cceeEEEEcCCCCeEEEEEecceEEEEEhhhceee
Confidence 1122567777888888888887 888887744433
No 19
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.52 E-value=2.8e-13 Score=137.54 Aligned_cols=199 Identities=15% Similarity=0.126 Sum_probs=153.7
Q ss_pred CCCEEEEcCCCCeEEEEecC-------------chhhhhh----------------------cccCCceEEEEc-CCCCc
Q 003205 34 SRNKVACAPFGGPIAVIRDD-------------SKIVQLY----------------------AESALRKLRIFN-SAGVL 77 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~-------------~k~~~~~----------------------~~~~~~~I~iy~-~~G~l 77 (839)
..+..|+||.|..||..+=+ ...+.+. +++.|.+.-+|+ ..|++
T Consensus 99 WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~ 178 (343)
T KOG0286|consen 99 WVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQ 178 (343)
T ss_pred eEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceE
Confidence 44688999999999986211 1111111 245689999999 69999
Q ss_pred eeEEEecCCCCCeEEEeecC-CCe-EEEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCCe-
Q 003205 78 ISETVWKNPGGRLIGMSWSE-DQT-LICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR- 153 (839)
Q Consensus 78 l~ti~~~~~~~~I~~~~fs~-de~-Lv~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~- 153 (839)
+..+.+|. |.|.++.++| ++. +|+++-|++.++||+ .|.-.+.+.|| +.+|..++|+|+|..++|++.+
T Consensus 179 ~~~f~GH~--gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh-----esDINsv~ffP~G~afatGSDD~ 251 (343)
T KOG0286|consen 179 TQVFHGHT--GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH-----ESDINSVRFFPSGDAFATGSDDA 251 (343)
T ss_pred EEEecCCc--ccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccc-----ccccceEEEccCCCeeeecCCCc
Confidence 99999999 9999999999 777 589999999999986 56568899999 7889999999999999998653
Q ss_pred EEEEecCC-CceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCC
Q 003205 154 YFCMADFA-TMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPN 227 (839)
Q Consensus 154 ~~~v~~~~-~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spn 227 (839)
.-.+-++. +..+..+.. .+..--|.+..||.+|..+.....|.++.+||.-... .+|.++|+.+.+|||
T Consensus 252 tcRlyDlRaD~~~a~ys~-----~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~D 326 (343)
T KOG0286|consen 252 TCRLYDLRADQELAVYSH-----DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPD 326 (343)
T ss_pred eeEEEeecCCcEEeeecc-----CcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCC
Confidence 22222332 223333322 1111124445799999999888889999999976443 689999999999999
Q ss_pred CcEEEEeecCCeEEEEe
Q 003205 228 GNFVACFTHDGRLVVNN 244 (839)
Q Consensus 228 g~~iA~~~~~g~i~i~s 244 (839)
|-.+|+++-|.+++||+
T Consensus 327 G~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 327 GMAVATGSWDSTLRIWA 343 (343)
T ss_pred CcEEEecchhHheeecC
Confidence 99999999999999994
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.50 E-value=1.6e-12 Score=149.62 Aligned_cols=201 Identities=15% Similarity=0.156 Sum_probs=160.1
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CC-CceeEEEecCCCCCeEEEeecCCCeE-EEEEeCC
Q 003205 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AG-VLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDG 108 (839)
Q Consensus 32 ~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G-~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dG 108 (839)
......+++||+|..++... .|.+|+||+. .+ ..+.+++.|. ..|.+++|+|++++ ++++.|+
T Consensus 203 ~~~v~~~~fs~d~~~l~s~s------------~D~tiriwd~~~~~~~~~~l~gH~--~~v~~~~f~p~g~~i~Sgs~D~ 268 (456)
T KOG0266|consen 203 TRGVSDVAFSPDGSYLLSGS------------DDKTLRIWDLKDDGRNLKTLKGHS--TYVTSVAFSPDGNLLVSGSDDG 268 (456)
T ss_pred ccceeeeEECCCCcEEEEec------------CCceEEEeeccCCCeEEEEecCCC--CceEEEEecCCCCEEEEecCCC
Confidence 45667999999999888886 5899999997 44 7899999999 99999999999975 7999999
Q ss_pred eEEEEeCC-CCccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCceE---EEcCCCCCCCCC-ceEEE
Q 003205 109 TVYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMKV---CELARPEVEELP-HCVAV 182 (839)
Q Consensus 109 tv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~~---~~l~~~~~~~~~-~~w~v 182 (839)
+||+|++. |+.....-+| ...|..+.|.++|-.+++++.+ +..+|+...... ..+.. ...+ ..+.+
T Consensus 269 tvriWd~~~~~~~~~l~~h-----s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~ 340 (456)
T KOG0266|consen 269 TVRIWDVRTGECVRKLKGH-----SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSG---AENSAPVTSV 340 (456)
T ss_pred cEEEEeccCCeEEEeeecc-----CCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccC---CCCCCceeEE
Confidence 99999975 6888888888 7889999999999999998754 677888775542 22222 1223 23444
Q ss_pred eCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCC---CceEEEECCCCcEEEEeecCCeEEEEecCCCCccccc
Q 003205 183 IEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDT---LSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDE 254 (839)
Q Consensus 183 i~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~---~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~ 254 (839)
.|||+|..++....|+++.+|+..... .++.. .+.+...+++|+++.+++.|+.|.+|+..-...++.+
T Consensus 341 ---~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l 417 (456)
T KOG0266|consen 341 ---QFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL 417 (456)
T ss_pred ---EECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh
Confidence 678899999999999999999988432 23222 4667777999999999999999999998766666555
Q ss_pred cCC
Q 003205 255 SCE 257 (839)
Q Consensus 255 ~~~ 257 (839)
..+
T Consensus 418 ~~h 420 (456)
T KOG0266|consen 418 EGH 420 (456)
T ss_pred cCC
Confidence 555
No 21
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.50 E-value=5.8e-13 Score=149.55 Aligned_cols=244 Identities=14% Similarity=0.180 Sum_probs=189.7
Q ss_pred CCceEEEEcCC-CCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEE
Q 003205 64 ALRKLRIFNSA-GVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVF 140 (839)
Q Consensus 64 ~~~~I~iy~~~-G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~ 140 (839)
..+.|+|||.+ ++-|.|+.. +-+.+..|-|.+. .+++..+|.+.+|++ .+.+.++...| +..||++..
T Consensus 392 a~~SikiWn~~t~kciRTi~~----~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AH-----dgaIWsi~~ 462 (888)
T KOG0306|consen 392 AGESIKIWNRDTLKCIRTITC----GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAH-----DGAIWSISL 462 (888)
T ss_pred CCCcEEEEEccCcceeEEecc----ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcc-----ccceeeeee
Confidence 46889999976 899999975 6789999999887 579999999999985 56777777778 788999999
Q ss_pred ECCeEEEEecCCe-EEEEecCC------CceEEEc--CCCC-CCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCC
Q 003205 141 WGNGVVCVTEANR-YFCMADFA------TMKVCEL--ARPE-VEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDG 210 (839)
Q Consensus 141 ~~~G~v~~t~~~~-~~~v~~~~------~~~~~~l--~~~~-~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~ 210 (839)
.|+|.-++|++.+ .+.+|++. +.+-+.| .... +.-+.. |+...+||||..++..=-|+||.++-.+.
T Consensus 463 ~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~dd---vL~v~~Spdgk~LaVsLLdnTVkVyflDt 539 (888)
T KOG0306|consen 463 SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDD---VLCVSVSPDGKLLAVSLLDNTVKVYFLDT 539 (888)
T ss_pred cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEecccc---EEEEEEcCCCcEEEEEeccCeEEEEEecc
Confidence 9988888887653 33344332 1111111 1000 101112 33336788999999888899999998887
Q ss_pred cc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEc
Q 003205 211 VQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVA 285 (839)
Q Consensus 211 ~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig 285 (839)
.. -+|.-||..|-+|||++.|++.+.|.+++||-.||+++...|-.| +|+|.
T Consensus 540 lKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH------------dDSvm----------- 596 (888)
T KOG0306|consen 540 LKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH------------DDSVM----------- 596 (888)
T ss_pred eeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc------------cCcee-----------
Confidence 65 589999999999999999999999999999999999998665444 22322
Q ss_pred CCCCceEeccCCCeEEeecCCc-eEEEccCcceeeeccchhhHhhhccCCCChhhhHHHHHH
Q 003205 286 PQAEPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALD 346 (839)
Q Consensus 286 ~~~~~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~~~~vf~igS~~pga~L~~A~~ 346 (839)
+|.|-+....++...-|| +|-|..++.+.+|+.+.|.+.|+...-.+.|.++++++-
T Consensus 597 ----~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh 654 (888)
T KOG0306|consen 597 ----SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH 654 (888)
T ss_pred ----EEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccC
Confidence 477777777888889999 999999999999999999999999888888888887764
No 22
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.50 E-value=3.9e-12 Score=156.83 Aligned_cols=219 Identities=16% Similarity=0.213 Sum_probs=146.1
Q ss_pred CCceEEEEcC-CCCceeEEEecCCCCCeEEEeecC-CCe-EEEEEeCCeEEEEeCC-CCccccCCCCCccccccCeEEEE
Q 003205 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSE-DQT-LICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECV 139 (839)
Q Consensus 64 ~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~-de~-Lv~v~~dGtv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~ 139 (839)
.+++|+||+. .|+.+.++..|. +.|.++.|+| ++. |++++.||+|++||+. |+...... + ...|..+.
T Consensus 553 ~Dg~v~lWd~~~~~~~~~~~~H~--~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-~-----~~~v~~v~ 624 (793)
T PLN00181 553 FEGVVQVWDVARSQLVTEMKEHE--KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-T-----KANICCVQ 624 (793)
T ss_pred CCCeEEEEECCCCeEEEEecCCC--CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-c-----CCCeEEEE
Confidence 6899999995 588899999998 9999999997 665 6899999999999975 44433222 2 23577778
Q ss_pred EEC-CeEEEEecCCe-EEEEecCCCce--EEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCc----
Q 003205 140 FWG-NGVVCVTEANR-YFCMADFATMK--VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGV---- 211 (839)
Q Consensus 140 ~~~-~G~v~~t~~~~-~~~v~~~~~~~--~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~---- 211 (839)
+++ +|..+++++.+ ...+|+...+. ...+.. +....+.+ .|+ ++..++.++.|++|.+||....
T Consensus 625 ~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~----h~~~V~~v---~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 625 FPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG----HSKTVSYV---RFV-DSSTLVSSSTDNTLKLWDLSMSISGI 696 (793)
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC----CCCCEEEE---EEe-CCCEEEEEECCCEEEEEeCCCCcccc
Confidence 754 78888876543 44566654332 112211 22222223 232 6788999999999999997621
Q ss_pred ---c----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEE
Q 003205 212 ---Q----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMV 284 (839)
Q Consensus 212 ---~----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~li 284 (839)
. .++...+..+++||+|++||+++.||++.+|+......+..+..........+...+....|
T Consensus 697 ~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V---------- 766 (793)
T PLN00181 697 NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFI---------- 766 (793)
T ss_pred CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEE----------
Confidence 1 45677788999999999999999999999998765544433332211111111111110000
Q ss_pred cCCCCceEeccCCCeEEeecCCc-eEEEc
Q 003205 285 APQAEPVQYFYDEPLVLIPECDG-VRILS 312 (839)
Q Consensus 285 g~~~~~v~f~~~~~~~l~~E~DG-vRIit 312 (839)
..+.|..++..++....|| |+||.
T Consensus 767 ----~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 767 ----SSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred ----EEEEEcCCCCeEEEecCCCcEEEEe
Confidence 1566777788888888898 99985
No 23
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.47 E-value=1.9e-11 Score=132.84 Aligned_cols=279 Identities=19% Similarity=0.196 Sum_probs=189.8
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEE---ecCCCCCeEEEeecCCCe-EEEEEeCCe
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETV---WKNPGGRLIGMSWSEDQT-LICVVQDGT 109 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~---~~~~~~~I~~~~fs~de~-Lv~v~~dGt 109 (839)
.+.|.+||+|...|+++ .|++|-||+. +|..+..|. .|+ |.|.++.|+||+. +++++.|.+
T Consensus 193 V~~VRysPDG~~Fat~g------------sDgki~iyDGktge~vg~l~~~~aHk--GsIfalsWsPDs~~~~T~SaDkt 258 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAG------------SDGKIYIYDGKTGEKVGELEDSDAHK--GSIFALSWSPDSTQFLTVSADKT 258 (603)
T ss_pred eeeEEECCCCCeEEEec------------CCccEEEEcCCCccEEEEecCCCCcc--ccEEEEEECCCCceEEEecCCce
Confidence 35899999999999997 6999999994 899999998 777 9999999999986 799999999
Q ss_pred EEEEeC-CCCc-cccCCCCCccccccCeEEEEEECCe-EEEEecCCeEEEEecCCCceE-EEcCCCCCCCCCceEEEeCC
Q 003205 110 VYRYNI-HAEL-IEPNASMGKECFEENVVECVFWGNG-VVCVTEANRYFCMADFATMKV-CELARPEVEELPHCVAVIEP 185 (839)
Q Consensus 110 v~l~~~-~G~~-~~~~~g~~~~~~~~~V~~~~~~~~G-~v~~t~~~~~~~v~~~~~~~~-~~l~~~~~~~~~~~w~vi~~ 185 (839)
+++|+. .+++ .++.+|..++ +.-. -.+|.++ ++-++.+|.+-+++- +.+.+ ..+.- -+..+++.++
T Consensus 259 ~KIWdVs~~slv~t~~~~~~v~---dqqv-G~lWqkd~lItVSl~G~in~ln~-~d~~~~~~i~G--HnK~ITaLtv--- 328 (603)
T KOG0318|consen 259 IKIWDVSTNSLVSTWPMGSTVE---DQQV-GCLWQKDHLITVSLSGTINYLNP-SDPSVLKVISG--HNKSITALTV--- 328 (603)
T ss_pred EEEEEeeccceEEEeecCCchh---ceEE-EEEEeCCeEEEEEcCcEEEEecc-cCCChhheecc--cccceeEEEE---
Confidence 999985 4566 4566665433 2222 2567744 444555666544442 22221 11211 0022444444
Q ss_pred CCCCCCcEEEEEEeCCeEEEEecCCcc------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcccc--ccCC
Q 003205 186 KYTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVID--ESCE 257 (839)
Q Consensus 186 ~~S~~~~~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e--~~~~ 257 (839)
|+||.++...+.||.|.-|+..... ..|..-|.+|+.+-+|.++ +.+.|.++++.+-.-+..-.. +++
T Consensus 329 --~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~-t~g~Dd~l~~~~~~~~~~t~~~~~~l- 404 (603)
T KOG0318|consen 329 --SPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELF-TIGWDDTLRVISLKDNGYTKSEVVKL- 404 (603)
T ss_pred --cCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEE-EEecCCeEEEEecccCcccccceeec-
Confidence 4499999999999999999877432 4578889999999987554 446778999986531111111 233
Q ss_pred CCCCCCceeeecCc-eEEEEecCEEEEEc-CCC----------CceEeccCCCeEEeecCCc-eEEEccCcceeeec--c
Q 003205 258 SALPPEQIAWCGMD-SVLLYWNDMLVMVA-PQA----------EPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQR--V 322 (839)
Q Consensus 258 ~~~~p~~~~WcG~d-~vv~~~~~~l~lig-~~~----------~~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~--V 322 (839)
...|..++=..++ +.++.+...+.+.- ..+ ..+-..+++..+++...|| |+|++.+..++... .
T Consensus 405 -g~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~ 483 (603)
T KOG0318|consen 405 -GSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL 483 (603)
T ss_pred -CCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee
Confidence 3478766655443 44555555444333 222 2344556678889999999 99999987665443 2
Q ss_pred chhhHhhhccCCCChhhhHH
Q 003205 323 PASTEQIFAIGSTSPAALLY 342 (839)
Q Consensus 323 p~~~~~vf~igS~~pga~L~ 342 (839)
-++...|-.+..++++++|.
T Consensus 484 ~~h~a~iT~vaySpd~~yla 503 (603)
T KOG0318|consen 484 LEHRAAITDVAYSPDGAYLA 503 (603)
T ss_pred ecccCCceEEEECCCCcEEE
Confidence 35667788888899998886
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.47 E-value=3.3e-12 Score=137.09 Aligned_cols=240 Identities=15% Similarity=0.161 Sum_probs=170.7
Q ss_pred CCeEEEeecCCCe-EEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEecC--CeEEEEecCCCce
Q 003205 88 GRLIGMSWSEDQT-LICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEA--NRYFCMADFATMK 164 (839)
Q Consensus 88 ~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~--~~~~~v~~~~~~~ 164 (839)
..|.+++|+.+|. |++++.||.+|+|+.+|.+..+.--| ...|..++....|--+++++ +.+..++...+..
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~H-----kgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQH-----KGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhcc-----CCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence 4699999999998 58999999999999999997655556 66799999888998888875 4455444433333
Q ss_pred EEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCe
Q 003205 165 VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGR 239 (839)
Q Consensus 165 ~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~ 239 (839)
-+.++-.......-.|. +.+..+.-+.|+.|++...++.. .+|.++|..|.+.|.|.++|+.++|+|
T Consensus 311 ~q~f~~~s~~~lDVdW~--------~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T 382 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQ--------SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT 382 (524)
T ss_pred EEeeeeccCCccceEEe--------cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCe
Confidence 33332111101123473 44567777889989888777553 579999999999999999999999999
Q ss_pred EEEEecC---CCCccccccC--------------CCCCCCCceeeecCceEEEEecC-----EEEEEcCCCC--ceEecc
Q 003205 240 LVVNNTN---FSSPVIDESC--------------ESALPPEQIAWCGMDSVLLYWND-----MLVMVAPQAE--PVQYFY 295 (839)
Q Consensus 240 i~i~ssd---~~~~l~e~~~--------------~~~~~p~~~~WcG~d~vv~~~~~-----~l~lig~~~~--~v~f~~ 295 (839)
++||+-. ....+..|.. .-.-.-.-+.||+.|.+|..|+- .-.|..+... ++.|++
T Consensus 383 lkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~ 462 (524)
T KOG0273|consen 383 LKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP 462 (524)
T ss_pred eEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC
Confidence 9999833 2222222220 00111237889999999999974 2344455543 899999
Q ss_pred CCCeEEeecCCc-eEEEccCcceeeeccchhhHhhhccCCCChhhhH
Q 003205 296 DEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIGSTSPAALL 341 (839)
Q Consensus 296 ~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~~~~vf~igS~~pga~L 341 (839)
++...+....|| |-||+....++.+.-.+.- -||.+--+..|.+|
T Consensus 463 ~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~-~Ifel~Wn~~G~kl 508 (524)
T KOG0273|consen 463 NGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG-GIFELCWNAAGDKL 508 (524)
T ss_pred CCcEEEecCCCCeeEeccccchheeEeecCCC-eEEEEEEcCCCCEE
Confidence 999999999998 9999999888887654433 36766555555444
No 25
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.46 E-value=5.3e-12 Score=128.88 Aligned_cols=249 Identities=15% Similarity=0.126 Sum_probs=178.8
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC--CceeEEEecCCCCCeEEEeecCCCe-EEEEEeCC
Q 003205 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG--VLISETVWKNPGGRLIGMSWSEDQT-LICVVQDG 108 (839)
Q Consensus 32 ~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G--~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dG 108 (839)
.-..+...|.|+|..+|+.+ .|..|-+||-.| +=..++++|+ +.|.++.|+.|+. +++++.|.
T Consensus 47 ~geI~~~~F~P~gs~~aSgG------------~Dr~I~LWnv~gdceN~~~lkgHs--gAVM~l~~~~d~s~i~S~gtDk 112 (338)
T KOG0265|consen 47 KGEIYTIKFHPDGSCFASGG------------SDRAIVLWNVYGDCENFWVLKGHS--GAVMELHGMRDGSHILSCGTDK 112 (338)
T ss_pred cceEEEEEECCCCCeEeecC------------CcceEEEEeccccccceeeecccc--ceeEeeeeccCCCEEEEecCCc
Confidence 34567899999999999986 799999999655 5677888999 9999999999986 78999999
Q ss_pred eEEEEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecC--CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCC
Q 003205 109 TVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEA--NRYFCMADFATMKVCELARPEVEELPHCVAVIEP 185 (839)
Q Consensus 109 tv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~--~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~ 185 (839)
+|+.||. .|+......+| ..-|..+....-|..++.+. -....+|++.........+ ..-..-+|
T Consensus 113 ~v~~wD~~tG~~~rk~k~h-----~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~----~kyqltAv--- 180 (338)
T KOG0265|consen 113 TVRGWDAETGKRIRKHKGH-----TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE----NKYQLTAV--- 180 (338)
T ss_pred eEEEEecccceeeehhccc-----cceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc----cceeEEEE---
Confidence 9999985 68877767777 44466566566777766642 2345666654222222111 11111222
Q ss_pred CCCCCCcEEEEEEeCCeEEEEecCCc---c--cccCCCceEEEECCCCcEEEEeecCCeEEEEecC-C---CCccccccC
Q 003205 186 KYTMTGSVEVLIGTDAGILMLDEDGV---Q--KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN-F---SSPVIDESC 256 (839)
Q Consensus 186 ~~S~~~~~~v~~s~d~tv~l~~~~~~---~--~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd-~---~~~l~e~~~ 256 (839)
.|..++...+.++.|+.|++||.... . .+|..+|+.|+.||+|.++-+-+.|.++.+|+-. | .+.+.-|..
T Consensus 181 ~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g 260 (338)
T KOG0265|consen 181 GFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQG 260 (338)
T ss_pred EecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeec
Confidence 44457788888899999999999533 2 7899999999999999999999999999999743 1 233434443
Q ss_pred CCCCCCCceeee------------cCceEEEEecC-----EEEEEcCCCC--ceEeccCCCeEEeecCC
Q 003205 257 ESALPPEQIAWC------------GMDSVLLYWND-----MLVMVAPQAE--PVQYFYDEPLVLIPECD 306 (839)
Q Consensus 257 ~~~~~p~~~~Wc------------G~d~vv~~~~~-----~l~lig~~~~--~v~f~~~~~~~l~~E~D 306 (839)
+.-.--+.+.|| ..|--+..|+. ..+|-|+.|. .+.|.+..++++....|
T Consensus 261 ~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sd 329 (338)
T KOG0265|consen 261 HIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSD 329 (338)
T ss_pred chhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccC
Confidence 322233456666 24555677864 4578888887 78888888888776666
No 26
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.46 E-value=3.4e-12 Score=130.30 Aligned_cols=255 Identities=16% Similarity=0.173 Sum_probs=181.1
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC------------------C-CceeEEEecCCCCCeEEEeecC
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA------------------G-VLISETVWKNPGGRLIGMSWSE 97 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~------------------G-~ll~ti~~~~~~~~I~~~~fs~ 97 (839)
.-++||+|.++|+.+ .|..|+|++-- + -.|.|+--|. +.|.++.|.|
T Consensus 117 ~aafs~DG~lvATGs------------aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~--devn~l~FHP 182 (430)
T KOG0640|consen 117 AAAFSPDGSLVATGS------------ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHV--DEVNDLDFHP 182 (430)
T ss_pred eeeeCCCCcEEEccC------------CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhcc--Ccccceeecc
Confidence 568999999999986 67888888743 2 2466676677 8999999999
Q ss_pred CCe-EEEEEeCCeEEEEeCCCCc----cccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCceEEEcCCC
Q 003205 98 DQT-LICVVQDGTVYRYNIHAEL----IEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMKVCELARP 171 (839)
Q Consensus 98 de~-Lv~v~~dGtv~l~~~~G~~----~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~ 171 (839)
.++ |++++.|+||++||+.-.- .+.+. + ...|..+.|.|.|-.++.+..| +..+.+++..+...=++|
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~q--d----~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanP 256 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQ--D----TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANP 256 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhh--c----cceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCc
Confidence 998 6899999999999875221 11111 1 4468999999999988887654 445555554333221221
Q ss_pred CCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc------ccc-CCCceEEEECCCCcEEEEeecCCeEEEEe
Q 003205 172 EVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------KVD-DTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (839)
Q Consensus 172 ~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~------~~~-~~~i~~ia~Spng~~iA~~~~~g~i~i~s 244 (839)
. ..+.=+|....||++|++-|+++.||.|++||--... ..| ...|.+..|+.||++|.+-+.|.++++|.
T Consensus 257 d---~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWE 333 (430)
T KOG0640|consen 257 D---DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWE 333 (430)
T ss_pred c---cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeee
Confidence 1 1222234445899999999999999999999855432 233 44599999999999999999999999999
Q ss_pred cCCCCccccccCC----CCCCCCceeeec-C---------ceEEEEecC------EEEEEcCCCC--ceEeccCCCeEEe
Q 003205 245 TNFSSPVIDESCE----SALPPEQIAWCG-M---------DSVLLYWND------MLVMVAPQAE--PVQYFYDEPLVLI 302 (839)
Q Consensus 245 sd~~~~l~e~~~~----~~~~p~~~~WcG-~---------d~vv~~~~~------~l~lig~~~~--~v~f~~~~~~~l~ 302 (839)
..-++.+.+|... .+.--.|-.+.. + ..-+|.|+. .+.=.|++|. |+..++.++.++.
T Consensus 334 i~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmT 413 (430)
T KOG0640|consen 334 ISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMT 413 (430)
T ss_pred ecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceee
Confidence 8888988888632 111112333331 1 123567864 3566788875 8888888898888
Q ss_pred ecCCc-eEEEccC
Q 003205 303 PECDG-VRILSNS 314 (839)
Q Consensus 303 ~E~DG-vRIit~~ 314 (839)
-..|- +|.|-..
T Consensus 414 csdD~raRFWyrr 426 (430)
T KOG0640|consen 414 CSDDFRARFWYRR 426 (430)
T ss_pred ecccceeeeeeec
Confidence 88885 9988654
No 27
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.46 E-value=1.2e-12 Score=133.87 Aligned_cols=252 Identities=15% Similarity=0.168 Sum_probs=173.4
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCC------CCCeEEEeecCCCe-EEEEEeCC
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNP------GGRLIGMSWSEDQT-LICVVQDG 108 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~------~~~I~~~~fs~de~-Lv~v~~dG 108 (839)
...|||+|+.++..+ .|+-|.+||. +|++-.-+++... .+.|.++.||.|.+ |++++.||
T Consensus 218 cA~FSPDgqyLvsgS------------vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 218 CARFSPDGQYLVSGS------------VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred heeeCCCCceEeecc------------ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence 567999999999876 7999999995 7887666655321 16899999999987 68999999
Q ss_pred eEEEEe-CCCCc-cccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCceEEEcCCCCCCCCCceEEEeCC
Q 003205 109 TVYRYN-IHAEL-IEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAVIEP 185 (839)
Q Consensus 109 tv~l~~-~~G~~-~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~ 185 (839)
.|++|. ..|.. ..|...| ..+|...+|+.+|--+++.+.+ ...+.++.+.+ .|.+ . ..|.-.|...
T Consensus 286 kIKvWri~tG~ClRrFdrAH-----tkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK--~LKE--f--rGHsSyvn~a 354 (508)
T KOG0275|consen 286 KIKVWRIETGQCLRRFDRAH-----TKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK--CLKE--F--RGHSSYVNEA 354 (508)
T ss_pred cEEEEEEecchHHHHhhhhh-----ccCeeEEEEccCcchhhcccccceEEEeccccch--hHHH--h--cCccccccce
Confidence 999997 46886 6677778 7789999999988888887765 56777766443 3332 1 2222336777
Q ss_pred CCCCCCcEEEEEEeCCeEEEEecCC--cc-----cccCCCceEEEECCCC-cEEEEeecCCeEEEEecCCCCccccccCC
Q 003205 186 KYTMTGSVEVLIGTDAGILMLDEDG--VQ-----KVDDTLSQKMAVSPNG-NFVACFTHDGRLVVNNTNFSSPVIDESCE 257 (839)
Q Consensus 186 ~~S~~~~~~v~~s~d~tv~l~~~~~--~~-----~~~~~~i~~ia~Spng-~~iA~~~~~g~i~i~ssd~~~~l~e~~~~ 257 (839)
.|++||..++.++.||||++|+... |. .+..-+|..|-+=|.. .++...+.+.++.|.+-. +++...|...
T Consensus 355 ~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSG 433 (508)
T KOG0275|consen 355 TFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSG 433 (508)
T ss_pred EEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccC
Confidence 8999999999999999999998764 32 3456678888777755 456666888899888765 6666666533
Q ss_pred CC---------CCC-Cceeee-cCceEEEEecC-----EEEEEcCCCCc--eEeccCCCeEEeecCCc-eEEEc
Q 003205 258 SA---------LPP-EQIAWC-GMDSVLLYWND-----MLVMVAPQAEP--VQYFYDEPLVLIPECDG-VRILS 312 (839)
Q Consensus 258 ~~---------~~p-~~~~Wc-G~d~vv~~~~~-----~l~lig~~~~~--v~f~~~~~~~l~~E~DG-vRIit 312 (839)
.. ..| -....| |+|.++.-|.- +-+|.-+..+. +..-+....+..=..|| +++|.
T Consensus 434 kREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 434 KREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 11 112 133334 88888776642 23333333332 22222233344445666 66664
No 28
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.45 E-value=4.1e-11 Score=122.04 Aligned_cols=252 Identities=13% Similarity=0.105 Sum_probs=190.6
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVY 111 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv~ 111 (839)
..+.+-.+|++..|..++ .|+.+-||+ ..++...-|+... .+|..-+|+|.+++ +|+.-|....
T Consensus 57 Ki~~~~ws~Dsr~ivSaS------------qDGklIvWDs~TtnK~haipl~s--~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSAS------------QDGKLIVWDSFTTNKVHAIPLPS--SWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred ceeeeEecCCcCeEEeec------------cCCeEEEEEcccccceeEEecCc--eeEEEEEECCCCCeEEecCcCceeE
Confidence 345667788888888876 588999999 4788999999988 99999999999997 5999999999
Q ss_pred EEeCC-----CCc--cccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCc-eEEEcCCCCCCCCCceEEE
Q 003205 112 RYNIH-----AEL--IEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATM-KVCELARPEVEELPHCVAV 182 (839)
Q Consensus 112 l~~~~-----G~~--~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~-~~~~l~~~~~~~~~~~w~v 182 (839)
||++. |.. .+...|| ..-+..|+|-+++. ++|++|+ --.+|+++.. +...|. ++.....++
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gH-----tgylScC~f~dD~~-ilT~SGD~TCalWDie~g~~~~~f~----GH~gDV~sl 192 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGH-----TGYLSCCRFLDDNH-ILTGSGDMTCALWDIETGQQTQVFH----GHTGDVMSL 192 (343)
T ss_pred EEecccccccccceeeeeecCc-----cceeEEEEEcCCCc-eEecCCCceEEEEEcccceEEEEec----CCcccEEEE
Confidence 99764 322 3346677 56688899998775 6677765 3567888754 333332 133333433
Q ss_pred eCCCCCC-CCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccC
Q 003205 183 IEPKYTM-TGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESC 256 (839)
Q Consensus 183 i~~~~S~-~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~ 256 (839)
.++| ++++.|..+.|++.++||..... .+|..-|+.|.|-|+|.-+|++++|++..+++.--++.+.-|..
T Consensus 193 ---sl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~ 269 (343)
T KOG0286|consen 193 ---SLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH 269 (343)
T ss_pred ---ecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc
Confidence 4455 89999999999999999987543 67888999999999999999999999999987655666655543
Q ss_pred CC-CCCCCceee--------e-cCceEEEEecC-----EEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEc
Q 003205 257 ES-ALPPEQIAW--------C-GMDSVLLYWND-----MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILS 312 (839)
Q Consensus 257 ~~-~~~p~~~~W--------c-G~d~vv~~~~~-----~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit 312 (839)
.. ......+++ + .+|-.+-.|+. .-.|.||.+. .+.-.+||..+....=|. +|||.
T Consensus 270 ~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 270 DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 22 122334444 3 47777778875 3578899986 677888999999999996 99984
No 29
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.45 E-value=1.6e-11 Score=129.15 Aligned_cols=208 Identities=16% Similarity=0.192 Sum_probs=151.0
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC-CceeEEEecCCCCCeEEEeecCCCeEEEEEe-CCeEEEE
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-VLISETVWKNPGGRLIGMSWSEDQTLICVVQ-DGTVYRY 113 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G-~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~-dGtv~l~ 113 (839)
..+.++|+|..+++.. .++.|++|+..+ +.+..+..+. +.|.++.|+++++++++.. ||.+++|
T Consensus 55 ~~~~~~~~~~~l~~~~------------~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~i~~~ 120 (289)
T cd00200 55 RDVAASADGTYLASGS------------SDKTIRLWDLETGECVRTLTGHT--SYVSSVAFSPDGRILSSSSRDKTIKVW 120 (289)
T ss_pred eEEEECCCCCEEEEEc------------CCCeEEEEEcCcccceEEEeccC--CcEEEEEEcCCCCEEEEecCCCeEEEE
Confidence 4778899988888875 489999999765 7888888877 8999999999988765555 9999999
Q ss_pred eCC-CCccccCCCCCccccccCeEEEEEECCeEEEEecC-CeEEEEecCCCce-EEEcCCCCCCCCCceEEEeCCCCCCC
Q 003205 114 NIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATMK-VCELARPEVEELPHCVAVIEPKYTMT 190 (839)
Q Consensus 114 ~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~-~~~~~v~~~~~~~-~~~l~~~~~~~~~~~w~vi~~~~S~~ 190 (839)
++. ++......+| ...|..+.+.++|..+++.. .....+++..... ...+.. ......+ ..++|+
T Consensus 121 ~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~----~~~~i~~---~~~~~~ 188 (289)
T cd00200 121 DVETGKCLTTLRGH-----TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG----HTGEVNS---VAFSPD 188 (289)
T ss_pred ECCCcEEEEEeccC-----CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec----Cccccce---EEECCC
Confidence 976 6654444455 56788899999777777764 3333455554222 222221 1111122 245668
Q ss_pred CcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCce
Q 003205 191 GSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQI 265 (839)
Q Consensus 191 ~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~ 265 (839)
+..+++.+.++.|.+|+..... ..+.+++..++++|++.+++..+.+|++.+|+.+-.+.+..+..+ ...+..+
T Consensus 189 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~i~~~ 267 (289)
T cd00200 189 GEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH-TNSVTSL 267 (289)
T ss_pred cCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc-CCcEEEE
Confidence 8889988889999999987433 356778999999999999999888999999987755665555544 3456788
Q ss_pred eeecC
Q 003205 266 AWCGM 270 (839)
Q Consensus 266 ~WcG~ 270 (839)
.|..+
T Consensus 268 ~~~~~ 272 (289)
T cd00200 268 AWSPD 272 (289)
T ss_pred EECCC
Confidence 88765
No 30
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.45 E-value=9.4e-12 Score=131.49 Aligned_cols=277 Identities=15% Similarity=0.157 Sum_probs=187.3
Q ss_pred cccEEeeccccccccCC---CCCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc--CCCC--ceeEEEecC
Q 003205 13 VYNRYYRKPELYQMRWK---HIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN--SAGV--LISETVWKN 85 (839)
Q Consensus 13 Lg~~~yr~~e~y~m~w~---~~~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~--~~G~--ll~ti~~~~ 85 (839)
|.|-+-.+.++-.-+|. +..-..+-+.||++|..+|+++ .|.+.-||. +++. +..|+.+|.
T Consensus 202 l~Dh~c~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaS------------kD~Taiiw~v~~d~~~kl~~tlvgh~ 269 (519)
T KOG0293|consen 202 LSDHFCGRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASAS------------KDSTAIIWIVVYDVHFKLKKTLVGHS 269 (519)
T ss_pred hhhcccCcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeecc------------CCceEEEEEEecCcceeeeeeeeccc
Confidence 34444444455444553 1123567899999999999997 356666665 4554 688899998
Q ss_pred CCCCeEEEeecCCCe-EEEEEeCCeEEEEeC-CCCc-cccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCC
Q 003205 86 PGGRLIGMSWSEDQT-LICVVQDGTVYRYNI-HAEL-IEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFA 161 (839)
Q Consensus 86 ~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~-~G~~-~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~ 161 (839)
.+|..+.||||+. |++..-|-.+++||. .|+. ..+.-++ ...+.+|...|+|+-++|++.+ -...|+.+
T Consensus 270 --~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~-----~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD 342 (519)
T KOG0293|consen 270 --QPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGL-----GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD 342 (519)
T ss_pred --CceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCc-----CCCcceeEEccCCceeEecCCCCcEEEecCC
Confidence 9999999999986 666666666999985 5776 3444443 4567888888999999998654 34456655
Q ss_pred CceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----cccCCCceEEEECCCCcEEEEeecC
Q 003205 162 TMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHD 237 (839)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~~~~ 237 (839)
+.. +....-...|..|++ +.|+||...+++..|..+.+++..... .....||+++++|-||+++-.--.+
T Consensus 343 gn~---~~~W~gvr~~~v~dl---ait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~ 416 (519)
T KOG0293|consen 343 GNI---LGNWEGVRDPKVHDL---AITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQD 416 (519)
T ss_pred cch---hhcccccccceeEEE---EEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEccc
Confidence 322 221111134666766 334499999999999999999877554 3467899999999999776665578
Q ss_pred CeEEEEecCCCCccccccCCCCCCC----------Cceeee-cCceEEEEecC-----EEEEEcCCCC--ceEeccCCCe
Q 003205 238 GRLVVNNTNFSSPVIDESCESALPP----------EQIAWC-GMDSVLLYWND-----MLVMVAPQAE--PVQYFYDEPL 299 (839)
Q Consensus 238 g~i~i~ssd~~~~l~e~~~~~~~~p----------~~~~Wc-G~d~vv~~~~~-----~l~lig~~~~--~v~f~~~~~~ 299 (839)
.++.+|+-.=......|..+.++.. ..+.=. ++|.-|..|.. ...|-||... .|.|++..+-
T Consensus 417 qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~ 496 (519)
T KOG0293|consen 417 QEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPE 496 (519)
T ss_pred CeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHH
Confidence 8899997552223344544432111 112222 36677778864 4578888775 7888876554
Q ss_pred -EEeecCCc-eEEEccC
Q 003205 300 -VLIPECDG-VRILSNS 314 (839)
Q Consensus 300 -~l~~E~DG-vRIit~~ 314 (839)
+.++.=|| ||||...
T Consensus 497 m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 497 MFASASDDGTIRIWGPS 513 (519)
T ss_pred HhhccCCCCeEEEecCC
Confidence 56666778 9999986
No 31
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.42 E-value=3.7e-12 Score=144.69 Aligned_cols=192 Identities=11% Similarity=0.027 Sum_probs=150.3
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCC-ceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV-LISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVY 111 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~-ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~ 111 (839)
..|.++|||+-..+...+ .|.++|+|+..-. -+-..++|. .+|.++.|+|-|. +++++.|+|.+
T Consensus 453 PVyg~sFsPd~rfLlScS------------ED~svRLWsl~t~s~~V~y~GH~--~PVwdV~F~P~GyYFatas~D~tAr 518 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCS------------EDSSVRLWSLDTWSCLVIYKGHL--APVWDVQFAPRGYYFATASHDQTAR 518 (707)
T ss_pred ceeeeeecccccceeecc------------CCcceeeeecccceeEEEecCCC--cceeeEEecCCceEEEecCCCceee
Confidence 456777888777666554 6899999997543 344456666 8999999999998 58999999999
Q ss_pred EEeCC-CCccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCC
Q 003205 112 RYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTM 189 (839)
Q Consensus 112 l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~ 189 (839)
+|+.. -...+...|| ..+|-.++|.||+-.++|++-+ -..+|++......++-. |+.-+ |..-.|||
T Consensus 519 LWs~d~~~PlRifagh-----lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~---GH~~~---V~al~~Sp 587 (707)
T KOG0263|consen 519 LWSTDHNKPLRIFAGH-----LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT---GHKGP---VTALAFSP 587 (707)
T ss_pred eeecccCCchhhhccc-----ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec---CCCCc---eEEEEEcC
Confidence 99643 3447788899 7778889999999999998664 56788877444344332 22222 33337888
Q ss_pred CCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccc
Q 003205 190 TGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVI 252 (839)
Q Consensus 190 ~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~ 252 (839)
+|.++++++.|+.|.+||..+.. .+|.+.|.+|+||++|..+|.++.|.++.+| |+.....
T Consensus 588 ~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lW--D~~~~~~ 653 (707)
T KOG0263|consen 588 CGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLW--DLTKVIE 653 (707)
T ss_pred CCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEE--Echhhcc
Confidence 99999999999999999988753 6789999999999999999999999999999 4555443
No 32
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.41 E-value=5.7e-11 Score=129.20 Aligned_cols=275 Identities=16% Similarity=0.139 Sum_probs=185.0
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCC---ceeEEEecCCCCCeEEEeecCCCeEEEEEeCCe-
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV---LISETVWKNPGGRLIGMSWSEDQTLICVVQDGT- 109 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~---ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGt- 109 (839)
.....-+||.|-.||... ..++||||+..++ |-.+++--. |+|-++.|+.|++-+++..+|.
T Consensus 61 ~vtVAkySPsG~yiASGD------------~sG~vRIWdtt~~~hiLKnef~v~a--G~I~Di~Wd~ds~RI~avGEGre 126 (603)
T KOG0318|consen 61 QVTVAKYSPSGFYIASGD------------VSGKVRIWDTTQKEHILKNEFQVLA--GPIKDISWDFDSKRIAAVGEGRE 126 (603)
T ss_pred eeEEEEeCCCceEEeecC------------CcCcEEEEeccCcceeeeeeeeecc--cccccceeCCCCcEEEEEecCcc
Confidence 344677999999999874 5799999998773 344477666 9999999999999877777765
Q ss_pred ----EEEEeCCCCccccCCCCCccccccCeEEEEEEC-CeEEEEecCCeEEEEecCCCceEEEcCCCCCCCCCceEEEeC
Q 003205 110 ----VYRYNIHAELIEPNASMGKECFEENVVECVFWG-NGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIE 184 (839)
Q Consensus 110 ----v~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~ 184 (839)
+.+||- |+-.=-..|| ...|..|.|=+ --+-++|.+.+.- |.=+++| +.+|... ...|.--|..
T Consensus 127 rfg~~F~~DS-G~SvGei~Gh-----Sr~ins~~~KpsRPfRi~T~sdDn~-v~ffeGP-PFKFk~s---~r~HskFV~~ 195 (603)
T KOG0318|consen 127 RFGHVFLWDS-GNSVGEITGH-----SRRINSVDFKPSRPFRIATGSDDNT-VAFFEGP-PFKFKSS---FREHSKFVNC 195 (603)
T ss_pred ceeEEEEecC-CCccceeecc-----ceeEeeeeccCCCceEEEeccCCCe-EEEeeCC-Ceeeeec---ccccccceee
Confidence 444542 2222223456 55678888876 4556777654321 2223344 3444421 2233334666
Q ss_pred CCCCCCCcEEEEEEeCCeEEEEecCCcc--------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccC
Q 003205 185 PKYTMTGSVEVLIGTDAGILMLDEDGVQ--------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESC 256 (839)
Q Consensus 185 ~~~S~~~~~~v~~s~d~tv~l~~~~~~~--------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~ 256 (839)
..|||||+..+.++.|++++++|-.... ..|.|.|.+++.|||++.+++.+.|.+++||+-.-.+...++..
T Consensus 196 VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~ 275 (603)
T KOG0318|consen 196 VRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPM 275 (603)
T ss_pred EEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeec
Confidence 6899999999999999999999866432 47889999999999999999999999999999877788888876
Q ss_pred CCC--CCCCceeeecCceEEEEecCEE------------EEEcCCCC--ceEeccCCCeEEeecCCc-eEEEccCcceee
Q 003205 257 ESA--LPPEQIAWCGMDSVLLYWNDML------------VMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSNSSMEFL 319 (839)
Q Consensus 257 ~~~--~~p~~~~WcG~d~vv~~~~~~l------------~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l 319 (839)
... ..-....|-++.-+.++....+ .+.||... ...-..|+..+++...|| |-=|...+++--
T Consensus 276 ~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 276 GSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred CCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 643 2223456774444444444333 44455443 344455677788889999 888877755544
Q ss_pred eccc-hhhHhhhccC
Q 003205 320 QRVP-ASTEQIFAIG 333 (839)
Q Consensus 320 ~~Vp-~~~~~vf~ig 333 (839)
+.++ .|+..|-++.
T Consensus 356 ~~~g~~h~nqI~~~~ 370 (603)
T KOG0318|consen 356 RLAGKGHTNQIKGMA 370 (603)
T ss_pred ccccccccceEEEEe
Confidence 4442 2333444443
No 33
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.40 E-value=6.4e-12 Score=141.35 Aligned_cols=268 Identities=13% Similarity=0.187 Sum_probs=198.5
Q ss_pred CCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCC--eEEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEE
Q 003205 64 ALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQ--TLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVF 140 (839)
Q Consensus 64 ~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de--~Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~ 140 (839)
.+..|.+|+ -.+++.+.|.+.. +.|.+|.|--+| .|++++..+.+|+|+.+|-.-+...|| .+.|.+...
T Consensus 301 aeQnl~l~d~~~l~i~k~ivG~n--dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH-----~e~vlSL~~ 373 (775)
T KOG0319|consen 301 AEQNLFLYDEDELTIVKQIVGYN--DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGH-----TEAVLSLDV 373 (775)
T ss_pred ccceEEEEEccccEEehhhcCCc--hhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCc-----hhheeeeee
Confidence 478999997 4788999999998 999999998533 489999999999999988887788899 788999999
Q ss_pred ECCeEEEEecCCe----EEEEecCCCceEEEcCCC-CCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc---
Q 003205 141 WGNGVVCVTEANR----YFCMADFATMKVCELARP-EVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--- 212 (839)
Q Consensus 141 ~~~G~v~~t~~~~----~~~v~~~~~~~~~~l~~~-~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~--- 212 (839)
|.+|..++|.+.+ +|.++|-. ...-.+... +..+...+-+. +. ..-...|++|.|.|+++|+..+..
T Consensus 374 ~~~g~llat~sKD~svilWr~~~~~-~~~~~~a~~~gH~~svgava~-~~---~~asffvsvS~D~tlK~W~l~~s~~~~ 448 (775)
T KOG0319|consen 374 WSSGDLLATGSKDKSVILWRLNNNC-SKSLCVAQANGHTNSVGAVAG-SK---LGASFFVSVSQDCTLKLWDLPKSKETA 448 (775)
T ss_pred cccCcEEEEecCCceEEEEEecCCc-chhhhhhhhcccccccceeee-cc---cCccEEEEecCCceEEEecCCCccccc
Confidence 9999889997653 44443211 111111110 01122232222 11 122567888899999999988721
Q ss_pred -----------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCC---------ceeeecCce
Q 003205 213 -----------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPE---------QIAWCGMDS 272 (839)
Q Consensus 213 -----------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~---------~~~WcG~d~ 272 (839)
..|...|+.++++||-++||+++.|.|.+||.-.-.+.+-.+..|.. ... -|+=|+.|+
T Consensus 449 ~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R-Gvw~V~Fs~~dq~laT~SgD~ 527 (775)
T KOG0319|consen 449 FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR-GVWCVSFSKNDQLLATCSGDK 527 (775)
T ss_pred ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCcc-ceEEEEeccccceeEeccCCc
Confidence 36788899999999999999999999999997663333333444421 122 344557889
Q ss_pred EEEEecC-----EEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEccCcceeeeccchhhHhhhccCCCChhhhHHHH
Q 003205 273 VLLYWND-----MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDA 344 (839)
Q Consensus 273 vv~~~~~-----~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~~~~vf~igS~~pga~L~~A 344 (839)
+|..|.- .-.+-||... .+.|.-++..+++..-|| +|||+-++.+=+..+-.|..+|+...-++.+.+.++|
T Consensus 528 TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tg 607 (775)
T KOG0319|consen 528 TVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTG 607 (775)
T ss_pred eEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEec
Confidence 9998863 4567788876 677887899999999999 9999999999999999999999988777666665533
No 34
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.40 E-value=2.6e-11 Score=120.82 Aligned_cols=246 Identities=15% Similarity=0.169 Sum_probs=176.1
Q ss_pred cCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCC-CCc--cccCCCCCccccccCeEEE
Q 003205 63 SALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIH-AEL--IEPNASMGKECFEENVVEC 138 (839)
Q Consensus 63 ~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~-G~~--~~~~~g~~~~~~~~~V~~~ 138 (839)
+.|.+||+|. .+|.=..||+... +.|..+.-|||...+.+..+..||+||+. ++. .-+.-|| ...|..+
T Consensus 17 ~YDhTIRfWqa~tG~C~rTiqh~d--sqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h-----~kNVtaV 89 (311)
T KOG0315|consen 17 GYDHTIRFWQALTGICSRTIQHPD--SQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGH-----TKNVTAV 89 (311)
T ss_pred cCcceeeeeehhcCeEEEEEecCc--cceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEecc-----CCceEEE
Confidence 4899999999 5899999999877 99999999999998888889999999874 332 3345566 6779999
Q ss_pred EEECCeEEEEecCCe-EEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEE-eCCeEEEEecCCcc----
Q 003205 139 VFWGNGVVCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIG-TDAGILMLDEDGVQ---- 212 (839)
Q Consensus 139 ~~~~~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s-~d~tv~l~~~~~~~---- 212 (839)
-|.-+|--+.|++.+ ...||++..+..++..+.+ ++..+- |+.| .+++++.+ .+|.|.+||.....
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~--spVn~v-vlhp-----nQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN--SPVNTV-VLHP-----NQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhccCC--CCcceE-EecC-----CcceEEeecCCCcEEEEEccCCccccc
Confidence 999999999998765 4566666555555543311 334443 4554 35555555 48999999988653
Q ss_pred --cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCC-
Q 003205 213 --KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAE- 289 (839)
Q Consensus 213 --~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~- 289 (839)
+....++.++++-|||..+|.++..|+.++|..--.+...++ .|. ..+-.+.+-
T Consensus 162 liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l------~P~-----------------~k~~ah~~~i 218 (311)
T KOG0315|consen 162 LIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASEL------EPV-----------------HKFQAHNGHI 218 (311)
T ss_pred cCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccc------eEh-----------------hheecccceE
Confidence 456688999999999999999999999999974322221111 121 012223332
Q ss_pred -ceEeccCCCeEEeecCCc-eEEEccCcceeeec-cchhhHhhhccCCCChhhhHHHHHH
Q 003205 290 -PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQR-VPASTEQIFAIGSTSPAALLYDALD 346 (839)
Q Consensus 290 -~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~-Vp~~~~~vf~igS~~pga~L~~A~~ 346 (839)
...|++|+..+.....|- ++||+.+...-+.+ +..+...++.-.++.+|.+|+.|+-
T Consensus 219 l~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTass 278 (311)
T KOG0315|consen 219 LRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASS 278 (311)
T ss_pred EEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCC
Confidence 566777777777788885 99999887733443 3445567888888888888888764
No 35
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.39 E-value=2e-11 Score=143.25 Aligned_cols=233 Identities=18% Similarity=0.219 Sum_probs=166.5
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC--------C-----------ceeEEEecCCCCCeEE
Q 003205 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG--------V-----------LISETVWKNPGGRLIG 92 (839)
Q Consensus 32 ~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G--------~-----------ll~ti~~~~~~~~I~~ 92 (839)
+-....|-+||+|..+|+.+| |..|.||..++ . -+.++..|. +.|.+
T Consensus 69 ~~sv~CVR~S~dG~~lAsGSD------------D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~--~DV~D 134 (942)
T KOG0973|consen 69 DGSVNCVRFSPDGSYLASGSD------------DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD--SDVLD 134 (942)
T ss_pred cCceeEEEECCCCCeEeeccC------------cceEEEeeecccCCcccccccccccccceeeEEEEEecCC--Cccce
Confidence 567789999999999999985 67888888772 1 345567787 99999
Q ss_pred EeecCCCe-EEEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCC-ceEEEc
Q 003205 93 MSWSEDQT-LICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFAT-MKVCEL 168 (839)
Q Consensus 93 ~~fs~de~-Lv~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~-~~~~~l 168 (839)
+.|+|++. |++++-|++|.+||. .++..+...|| +.-|..+.|=|-|..+++.+. +...||+..+ .-...+
T Consensus 135 v~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H-----~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~I 209 (942)
T KOG0973|consen 135 VNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH-----QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSI 209 (942)
T ss_pred eccCCCccEEEEecccceEEEEccccceeeeeeecc-----cccccceEECCccCeeeeecCCceEEEEEcccceeeEee
Confidence 99999998 589999999999973 45778888899 778888887789999999754 3455555332 122233
Q ss_pred CCCCCCCCCceEEEeCCCCCCCCcEEEEEEe-C---CeEEEEecCCcc-----cccCCCceEEEECCC--------C---
Q 003205 169 ARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-D---AGILMLDEDGVQ-----KVDDTLSQKMAVSPN--------G--- 228 (839)
Q Consensus 169 ~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~-d---~tv~l~~~~~~~-----~~~~~~i~~ia~Spn--------g--- 228 (839)
.. +..+-|..--+.-+.+||||+.++.... + .++-+++.++-. .+|.+|+.-+.|+|. |
T Consensus 210 t~-pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~ 288 (942)
T KOG0973|consen 210 TK-PFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTST 288 (942)
T ss_pred cc-chhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCcc
Confidence 32 2222233223566789999999987653 3 356666665332 589999999999982 1
Q ss_pred --c----EEEEeecCCeEEEEecCCCCcccc-ccCCCCCCCCceeee--cCceEEEEecCEEEEEc
Q 003205 229 --N----FVACFTHDGRLVVNNTNFSSPVID-ESCESALPPEQIAWC--GMDSVLLYWNDMLVMVA 285 (839)
Q Consensus 229 --~----~iA~~~~~g~i~i~ssd~~~~l~e-~~~~~~~~p~~~~Wc--G~d~vv~~~~~~l~lig 285 (839)
. .+|.++.|++|-||++..-+.+.- ++.. .....+|.|| |-.--+|+.+..|.+++
T Consensus 289 ~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 289 QPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIH 353 (942)
T ss_pred CCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEE
Confidence 1 689999999999999987776632 2222 3467899999 55455555555555554
No 36
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.38 E-value=1.8e-11 Score=127.92 Aligned_cols=198 Identities=16% Similarity=0.116 Sum_probs=143.4
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYR 112 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l 112 (839)
...|-+-|+=-.+|+++ .+.+|++|+ -+|++..++++|. +.+.++.|+..|. |++.++|=.+++
T Consensus 111 vt~v~~hp~~~~v~~as------------~d~tikv~D~~tg~~e~~LrGHt--~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 111 VTRVIFHPSEALVVSAS------------EDATIKVFDTETGELERSLRGHT--DSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred eeeeeeccCceEEEEec------------CCceEEEEEccchhhhhhhhccc--cceeEEEEecCccEEEecCCccchhh
Confidence 34555666655556554 589999999 5999999999999 7799999999998 589999999999
Q ss_pred EeCCCCc--cccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCc-eEEE-------------------cC
Q 003205 113 YNIHAEL--IEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATM-KVCE-------------------LA 169 (839)
Q Consensus 113 ~~~~G~~--~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~-~~~~-------------------l~ 169 (839)
|++.+.+ .+...|| +..|..+.|+|.|..+++.+.+ -+..|.++.. -... ++
T Consensus 177 Wd~~~~~~c~ks~~gh-----~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~A 251 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGH-----EHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIA 251 (406)
T ss_pred eeHHHHHHHHHHhcCc-----ccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEE
Confidence 9987655 6678888 7789999999999888886653 3444444321 1111 12
Q ss_pred CCCCCCCCceEEEeCC---------------------CC----------CCCCcEEEEEEeCCeEEEEecCCcc-----c
Q 003205 170 RPEVEELPHCVAVIEP---------------------KY----------TMTGSVEVLIGTDAGILMLDEDGVQ-----K 213 (839)
Q Consensus 170 ~~~~~~~~~~w~vi~~---------------------~~----------S~~~~~~v~~s~d~tv~l~~~~~~~-----~ 213 (839)
..+.+.+.+.|.+-.- .+ ...|+.++..+.|+||+.|+..... .
T Consensus 252 s~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ 331 (406)
T KOG0295|consen 252 SCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV 331 (406)
T ss_pred ecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe
Confidence 2122233455544221 11 1123577888889999999988553 6
Q ss_pred ccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcc
Q 003205 214 VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPV 251 (839)
Q Consensus 214 ~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l 251 (839)
+|..+|..++|||-|++|++..+|+++.||+-.-.++.
T Consensus 332 ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 332 GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCM 369 (406)
T ss_pred cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceee
Confidence 78899999999999999999999999999975434433
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.35 E-value=1.6e-10 Score=142.54 Aligned_cols=228 Identities=10% Similarity=0.109 Sum_probs=154.5
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC-----C----ceeEEEecCCCCCeEEEeecCC-C-eEEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-----V----LISETVWKNPGGRLIGMSWSED-Q-TLIC 103 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G-----~----ll~ti~~~~~~~~I~~~~fs~d-e-~Lv~ 103 (839)
...++++|+|..+|+++ .+++|+||+... . ++.++.. . +.|.++.|++. + .|++
T Consensus 486 V~~i~fs~dg~~latgg------------~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~--~~v~~l~~~~~~~~~las 550 (793)
T PLN00181 486 VCAIGFDRDGEFFATAG------------VNKKIKIFECESIIKDGRDIHYPVVELAS-R--SKLSGICWNSYIKSQVAS 550 (793)
T ss_pred EEEEEECCCCCEEEEEe------------CCCEEEEEECCcccccccccccceEEecc-c--CceeeEEeccCCCCEEEE
Confidence 45789999999999987 589999998643 2 2223332 2 67899999974 3 4789
Q ss_pred EEeCCeEEEEeCC-CCccccCCCCCccccccCeEEEEEEC-CeEEEEecCCe-EEEEecCCCceE-EEcCCCCCCCCCce
Q 003205 104 VVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWG-NGVVCVTEANR-YFCMADFATMKV-CELARPEVEELPHC 179 (839)
Q Consensus 104 v~~dGtv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~~~-~~~v~~~~~~~~-~~l~~~~~~~~~~~ 179 (839)
++.||+|++||+. |+......+| ...|..+.|++ +|-.++|++.+ .+.+|++..... ..+. .....
T Consensus 551 ~~~Dg~v~lWd~~~~~~~~~~~~H-----~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-----~~~~v 620 (793)
T PLN00181 551 SNFEGVVQVWDVARSQLVTEMKEH-----EKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-----TKANI 620 (793)
T ss_pred EeCCCeEEEEECCCCeEEEEecCC-----CCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-----cCCCe
Confidence 9999999999965 5566666678 67799999986 78778776543 566777764322 2221 11122
Q ss_pred EEEeCCCC-CCCCcEEEEEEeCCeEEEEecCCcc------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccc
Q 003205 180 VAVIEPKY-TMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVI 252 (839)
Q Consensus 180 w~vi~~~~-S~~~~~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~ 252 (839)
+++ .| +++|..++..+.|++|++||..... ..|..+|..+.|+ +|..+++++.||+|.+|+......
T Consensus 621 ~~v---~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~-- 694 (793)
T PLN00181 621 CCV---QFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSIS-- 694 (793)
T ss_pred EEE---EEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCcc--
Confidence 333 22 3478999999999999999986432 4677899999997 678999999999999997531100
Q ss_pred cccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEccC
Q 003205 253 DESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSNS 314 (839)
Q Consensus 253 e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit~~ 314 (839)
... +.....+-|+.+. .+.|.+++..+++...|| |+||...
T Consensus 695 ----~~~-----------------~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 695 ----GIN-----------------ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred ----ccC-----------------CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 000 0001122233332 455666666777777777 7887754
No 38
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.7e-10 Score=119.05 Aligned_cols=262 Identities=12% Similarity=0.081 Sum_probs=183.7
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEe--CCe
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQ--DGT 109 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~--dGt 109 (839)
....+.++++|..+.+.. .+.+++||+ .+|+.+.+|.-+. -.+-.+.|+.... ++..+. |-+
T Consensus 16 ~i~sl~fs~~G~~litss------------~dDsl~LYd~~~g~~~~ti~skk--yG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSS------------EDDSLRLYDSLSGKQVKTINSKK--YGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred ceeEEEecCCCCEEEEec------------CCCeEEEEEcCCCceeeEeeccc--ccccEEEEecCCceEEEccCCCCCc
Confidence 445889999999998865 578999999 5999999999876 6778888998665 455555 789
Q ss_pred EEEEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCceEEEcCCCCCCCCCceEEEeCCCC
Q 003205 110 VYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAVIEPKY 187 (839)
Q Consensus 110 v~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~ 187 (839)
||.-++ +.++++++.|| ...|.....+|-+-.+++++.+ -..+|++..++.+-+-. +.+.|- ++|
T Consensus 82 IryLsl~dNkylRYF~GH-----~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~--~~~~pi------~Af 148 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGH-----KKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN--LSGRPI------AAF 148 (311)
T ss_pred eEEEEeecCceEEEcCCC-----CceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe--cCCCcc------eeE
Confidence 997786 56779999999 7889999999977888888775 67778776444322211 111222 156
Q ss_pred CCCCcEEEEEEeCCeEEEEecCCcc----------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCC
Q 003205 188 TMTGSVEVLIGTDAGILMLDEDGVQ----------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCE 257 (839)
Q Consensus 188 S~~~~~~v~~s~d~tv~l~~~~~~~----------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~ 257 (839)
+|+|-..+++...+.|+++|...-. ......|..|.|||||+.|.+.|..+.+++.+.=-+..+..|...
T Consensus 149 Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~ 228 (311)
T KOG1446|consen 149 DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGY 228 (311)
T ss_pred CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeec
Confidence 6689888888887799999988542 134567999999999999999999999988865334454444333
Q ss_pred CCCCCCceeeecCceEEEEecCEEEEEcCCCCceEeccCCCeEEeecCCc-eEEEccCcceeeeccch-hhHhhhccCCC
Q 003205 258 SALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPA-STEQIFAIGST 335 (839)
Q Consensus 258 ~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~-~~~~vf~igS~ 335 (839)
... |+. .-...|.+|+..++.++-|| |-||..+...-..+.-+ +...+-.+-..
T Consensus 229 ~~~--------~~~----------------~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fn 284 (311)
T KOG1446|consen 229 PNA--------GNL----------------PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFN 284 (311)
T ss_pred cCC--------CCc----------------ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccC
Confidence 100 000 01466778888889999988 88888866555544433 33333333344
Q ss_pred ChhhhHHHHHH
Q 003205 336 SPAALLYDALD 346 (839)
Q Consensus 336 ~pga~L~~A~~ 346 (839)
+-.+|+..|..
T Consensus 285 P~~~mf~sa~s 295 (311)
T KOG1446|consen 285 PRYAMFVSASS 295 (311)
T ss_pred CceeeeeecCc
Confidence 44455555543
No 39
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.35 E-value=2.4e-11 Score=136.88 Aligned_cols=182 Identities=9% Similarity=0.060 Sum_probs=144.3
Q ss_pred CCceEEEE---cCCCC--ceeEEEecCCCCCeEEEeecCCCe--EEEEEeCCeEEEEeCCCCc----------cccCCCC
Q 003205 64 ALRKLRIF---NSAGV--LISETVWKNPGGRLIGMSWSEDQT--LICVVQDGTVYRYNIHAEL----------IEPNASM 126 (839)
Q Consensus 64 ~~~~I~iy---~~~G~--ll~ti~~~~~~~~I~~~~fs~de~--Lv~v~~dGtv~l~~~~G~~----------~~~~~g~ 126 (839)
-|+++++| +..++ .+....+|. +.|-+++++..+- +++|+.|+|+++|++.+.- ..+-..|
T Consensus 385 KD~svilWr~~~~~~~~~~~a~~~gH~--~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aH 462 (775)
T KOG0319|consen 385 KDKSVILWRLNNNCSKSLCVAQANGHT--NSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAH 462 (775)
T ss_pred CCceEEEEEecCCcchhhhhhhhcccc--cccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhh
Confidence 58999999 44444 455578888 8999999988764 7999999999999987611 1122234
Q ss_pred CccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEE
Q 003205 127 GKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILM 205 (839)
Q Consensus 127 ~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l 205 (839)
+.+|..+.+.|+-..++|++++ ...+|+++. ...+... -++.-..|+| .|||..+.+++.|.|.||++
T Consensus 463 -----dKdIN~Vaia~ndkLiAT~SqDktaKiW~le~--~~l~~vL-sGH~RGvw~V---~Fs~~dq~laT~SgD~TvKI 531 (775)
T KOG0319|consen 463 -----DKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ--LRLLGVL-SGHTRGVWCV---SFSKNDQLLATCSGDKTVKI 531 (775)
T ss_pred -----cccccceEecCCCceEEecccccceeeecccC--ceEEEEe-eCCccceEEE---EeccccceeEeccCCceEEE
Confidence 5668999999999999999885 567777752 2222110 1256778999 88889999999999999999
Q ss_pred EecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCC
Q 003205 206 LDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCES 258 (839)
Q Consensus 206 ~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~ 258 (839)
|+.+.-. .+|...|.+.+|=.||+++.+.+.||-+++|+..-.++++.+|.|.
T Consensus 532 W~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~ 589 (775)
T KOG0319|consen 532 WSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHN 589 (775)
T ss_pred EEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhcc
Confidence 9988543 6788999999999999999999999999999988888888888773
No 40
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.35 E-value=2.2e-11 Score=127.26 Aligned_cols=236 Identities=14% Similarity=0.143 Sum_probs=176.6
Q ss_pred CceeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeEEEEe-CCCCccccCCCCCccccccCeEEEEEECCeEEEEecCCe
Q 003205 76 VLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYN-IHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR 153 (839)
Q Consensus 76 ~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv~l~~-~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~ 153 (839)
.+...+..+. ..|..+-|-|++-+ +++++|+|+++|| ..|++.....|| ...|.++.|...|..++|-+.+
T Consensus 99 ~l~~~l~g~r--~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGH-----t~sv~di~~~a~Gk~l~tcSsD 171 (406)
T KOG0295|consen 99 NLVQKLAGHR--SSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGH-----TDSVFDISFDASGKYLATCSSD 171 (406)
T ss_pred Cchhhhhccc--cceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhcc-----ccceeEEEEecCccEEEecCCc
Confidence 3444455555 78899999999998 5777999999998 579998889999 6779999999999999998887
Q ss_pred E-EEEecCCCceEEEcCCCCCC--CCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEEC
Q 003205 154 Y-FCMADFATMKVCELARPEVE--ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVS 225 (839)
Q Consensus 154 ~-~~v~~~~~~~~~~l~~~~~~--~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~S 225 (839)
. ..+|++++. -+.+.. ..+ ...++-++. |.|..++..+.|++|+.|+.+..- .++...|..|.++
T Consensus 172 l~~~LWd~~~~-~~c~ks-~~gh~h~vS~V~f~-----P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~ 244 (406)
T KOG0295|consen 172 LSAKLWDFDTF-FRCIKS-LIGHEHGVSSVFFL-----PLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVN 244 (406)
T ss_pred cchhheeHHHH-HHHHHH-hcCcccceeeEEEE-----ecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEec
Confidence 6 677777642 111111 111 223333333 378999999999999999988542 6778889999999
Q ss_pred CCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCC---------------------ceeee---cCceEEEEecC--
Q 003205 226 PNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPE---------------------QIAWC---GMDSVLLYWND-- 279 (839)
Q Consensus 226 png~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~---------------------~~~Wc---G~d~vv~~~~~-- 279 (839)
-||.++|+.+.|.++.+|...-.+...++..+ +-+.. ++..| ..|.++..|+-
T Consensus 245 ~DGti~As~s~dqtl~vW~~~t~~~k~~lR~h-Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t 323 (406)
T KOG0295|consen 245 QDGTIIASCSNDQTLRVWVVATKQCKAELREH-EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST 323 (406)
T ss_pred CCeeEEEecCCCceEEEEEeccchhhhhhhcc-ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC
Confidence 99999999999999999987766444444332 11222 33334 36788888974
Q ss_pred ---EEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEccCcceeeeccchhh
Q 003205 280 ---MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPAST 326 (839)
Q Consensus 280 ---~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~~ 326 (839)
.+.|+|+++. .+.|.+.|..+++---|+ +|||+-....=+...|.+.
T Consensus 324 g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~ 376 (406)
T KOG0295|consen 324 GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHE 376 (406)
T ss_pred CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCc
Confidence 5789999886 788988888887777777 9999998777777776554
No 41
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.1e-10 Score=129.20 Aligned_cols=230 Identities=13% Similarity=0.113 Sum_probs=165.7
Q ss_pred CCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeCCCCc--cccCCCCCccccccCeEEEE
Q 003205 64 ALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAEL--IEPNASMGKECFEENVVECV 139 (839)
Q Consensus 64 ~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~G~~--~~~~~g~~~~~~~~~V~~~~ 139 (839)
.|..|+||| ..|..+.++..|+ +-|.++.-.|..- +++.++|-+|++|+++++. .+++-|| +.-|.++.
T Consensus 75 DD~~IrVfnynt~ekV~~FeAH~--DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH-----~HyVMqv~ 147 (794)
T KOG0276|consen 75 DDMQIRVFNYNTGEKVKTFEAHS--DYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGH-----EHYVMQVA 147 (794)
T ss_pred CCceEEEEecccceeeEEeeccc--cceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCc-----ceEEEEEE
Confidence 589999999 5789999999999 9999999999886 5799999999999999887 6788899 77899999
Q ss_pred EEC-CeEEEEecCCe-EEEEecCCCceEE-EcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----
Q 003205 140 FWG-NGVVCVTEANR-YFCMADFATMKVC-ELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---- 212 (839)
Q Consensus 140 ~~~-~G~v~~t~~~~-~~~v~~~~~~~~~-~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~---- 212 (839)
|.| |--.+++.+-+ .+.||++.+|.+. +|. +-.....|-+-.+- .|.-.+++.+.|.++++||-+..+
T Consensus 148 fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~--gHekGVN~Vdyy~~---gdkpylIsgaDD~tiKvWDyQtk~CV~T 222 (794)
T KOG0276|consen 148 FNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE--GHEKGVNCVDYYTG---GDKPYLISGADDLTIKVWDYQTKSCVQT 222 (794)
T ss_pred ecCCCccceeeeeccccEEEEEcCCCCCceeee--ccccCcceEEeccC---CCcceEEecCCCceEEEeecchHHHHHH
Confidence 998 66667776653 5678887765332 121 00123455444331 133488999999999999988654
Q ss_pred -cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeee-----cCceEEEEecCEEEEEcC
Q 003205 213 -KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC-----GMDSVLLYWNDMLVMVAP 286 (839)
Q Consensus 213 -~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~Wc-----G~d~vv~~~~~~l~lig~ 286 (839)
.+|...|+.+.|.|.=..|+++++|||++||.+..-+.-..++.. ..=.|| |+..|++-+++...++..
T Consensus 223 LeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g-----leRvW~I~~~k~~~~i~vG~Deg~i~v~l 297 (794)
T KOG0276|consen 223 LEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG-----LERVWCIAAHKGDGKIAVGFDEGSVTVKL 297 (794)
T ss_pred hhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC-----CceEEEEeecCCCCeEEEeccCCcEEEEc
Confidence 689999999999999999999999999999987622221122222 244699 677788888876555544
Q ss_pred CCC--ceEeccCCCeE--EeecCCceEE
Q 003205 287 QAE--PVQYFYDEPLV--LIPECDGVRI 310 (839)
Q Consensus 287 ~~~--~v~f~~~~~~~--l~~E~DGvRI 310 (839)
..+ .++....+.++ ..+|+-++.+
T Consensus 298 greeP~vsMd~~gKIiwa~~~ei~~~~~ 325 (794)
T KOG0276|consen 298 GREEPAVSMDSNGKIIWAVHSEIQAVNL 325 (794)
T ss_pred cCCCCceeecCCccEEEEcCceeeeeec
Confidence 333 45555445443 2344444333
No 42
>PTZ00421 coronin; Provisional
Probab=99.34 E-value=2.4e-10 Score=131.79 Aligned_cols=194 Identities=15% Similarity=0.242 Sum_probs=124.6
Q ss_pred EEEecCCCCCeEEEeecC-CCe-EEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEE
Q 003205 80 ETVWKNPGGRLIGMSWSE-DQT-LICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCM 157 (839)
Q Consensus 80 ti~~~~~~~~I~~~~fs~-de~-Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v 157 (839)
.+.+|. +.|.++.|+| +++ |++++.||+|++|++...-.. . ...
T Consensus 70 ~l~GH~--~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~----~-------~~~--------------------- 115 (493)
T PTZ00421 70 ILLGQE--GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLT----Q-------NIS--------------------- 115 (493)
T ss_pred eEeCCC--CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccc----c-------ccC---------------------
Confidence 367787 9999999999 665 789999999999996421100 0 000
Q ss_pred ecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCC-cEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEE
Q 003205 158 ADFATMKVCELARPEVEELPHCVAVIEPKYTMTG-SVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFV 231 (839)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~-~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~i 231 (839)
.+ ...|.. +....+++ .|+|++ +.++.++.|++|.+||..... ..+..+|..+++||+|..+
T Consensus 116 ----~~-l~~L~g----H~~~V~~l---~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lL 183 (493)
T PTZ00421 116 ----DP-IVHLQG----HTKKVGIV---SFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLL 183 (493)
T ss_pred ----cc-eEEecC----CCCcEEEE---EeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEE
Confidence 00 001110 11222333 445564 678888889999999987543 4577889999999999999
Q ss_pred EEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecC-------------ceEEEEecC-----EEEEEcCCCC----
Q 003205 232 ACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGM-------------DSVLLYWND-----MLVMVAPQAE---- 289 (839)
Q Consensus 232 A~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~-------------d~vv~~~~~-----~l~lig~~~~---- 289 (839)
|+++.||+|+||+..-++.+.++..+.........|+.+ |..+..|+- .+.....+..
T Consensus 184 atgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~ 263 (493)
T PTZ00421 184 CTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALF 263 (493)
T ss_pred EEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceE
Confidence 999999999999976566666665553333345566633 344555642 2223222221
Q ss_pred ceEeccCCCeEEeec-CCc-eEEEccCcceee
Q 003205 290 PVQYFYDEPLVLIPE-CDG-VRILSNSSMEFL 319 (839)
Q Consensus 290 ~v~f~~~~~~~l~~E-~DG-vRIit~~~~~~l 319 (839)
...|..++..++++. -|| ||+|.-...+++
T Consensus 264 ~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 264 IPFFDEDTNLLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred EEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence 223556666665554 588 999988765544
No 43
>PTZ00421 coronin; Provisional
Probab=99.33 E-value=2.7e-10 Score=131.40 Aligned_cols=210 Identities=10% Similarity=0.053 Sum_probs=142.0
Q ss_pred CCCEEEEcC-CCCeEEEEecCchhhhhhcccCCceEEEEcCC-C-------CceeEEEecCCCCCeEEEeecCCC--eEE
Q 003205 34 SRNKVACAP-FGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-G-------VLISETVWKNPGGRLIGMSWSEDQ--TLI 102 (839)
Q Consensus 34 ~~~~va~sp-~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G-------~ll~ti~~~~~~~~I~~~~fs~de--~Lv 102 (839)
....++++| +|..||+.+ .|++|+||+.. + .++.++..|. ..|.++.|+|++ .|+
T Consensus 77 ~V~~v~fsP~d~~~LaSgS------------~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~--~~V~~l~f~P~~~~iLa 142 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTAS------------EDGTIMGWGIPEEGLTQNISDPIVHLQGHT--KKVGIVSFHPSAMNVLA 142 (493)
T ss_pred CEEEEEEcCCCCCEEEEEe------------CCCEEEEEecCCCccccccCcceEEecCCC--CcEEEEEeCcCCCCEEE
Confidence 456889999 778888886 58999999953 2 3577888888 899999999975 478
Q ss_pred EEEeCCeEEEEeCC-CCccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCce-EEEcCCCCCCCCCce
Q 003205 103 CVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMK-VCELARPEVEELPHC 179 (839)
Q Consensus 103 ~v~~dGtv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~-~~~l~~~~~~~~~~~ 179 (839)
+++.||+|++||+. |+......+| ...|..+.++++|-.+++++.+ .+.+|+..+.. ...+... . +....
T Consensus 143 Sgs~DgtVrIWDl~tg~~~~~l~~h-----~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H-~-~~~~~ 215 (493)
T PTZ00421 143 SAGADMVVNVWDVERGKAVEVIKCH-----SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH-A-SAKSQ 215 (493)
T ss_pred EEeCCCEEEEEECCCCeEEEEEcCC-----CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecC-C-CCcce
Confidence 99999999999974 5555545566 6679999999999888887643 55677765433 2222210 0 11111
Q ss_pred EEEeCCCCCCCCcEEEEEEe----CCeEEEEecCCcc------ccc-CCCceEEEECCCCcEEEEee-cCCeEEEEecCC
Q 003205 180 VAVIEPKYTMTGSVEVLIGT----DAGILMLDEDGVQ------KVD-DTLSQKMAVSPNGNFVACFT-HDGRLVVNNTNF 247 (839)
Q Consensus 180 w~vi~~~~S~~~~~~v~~s~----d~tv~l~~~~~~~------~~~-~~~i~~ia~Spng~~iA~~~-~~g~i~i~ssd~ 247 (839)
-. .+++++..++.++. |++|.+||..... ..+ ...+....++|+|+.+++++ .||+|++|+..-
T Consensus 216 ~~----~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 216 RC----LWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred EE----EEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 11 23346777776653 7899999987432 112 23455668999999999887 499999998664
Q ss_pred CCccccccCCCCCCCCceeee
Q 003205 248 SSPVIDESCESALPPEQIAWC 268 (839)
Q Consensus 248 ~~~l~e~~~~~~~~p~~~~Wc 268 (839)
++.+......+..+...++|+
T Consensus 292 ~~~~~~~~~~s~~~~~g~~~~ 312 (493)
T PTZ00421 292 ERLTFCSSYSSVEPHKGLCMM 312 (493)
T ss_pred CceEEEeeccCCCCCcceEec
Confidence 444322222222234566665
No 44
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.31 E-value=1.1e-10 Score=130.89 Aligned_cols=234 Identities=15% Similarity=0.249 Sum_probs=165.5
Q ss_pred CCceEEEEcCCCCc-eeEEEecCCCCCeEE-EeecC--CCeEEEEEeCCeEEEEeCCC-CccccCCCCCccccccCeEEE
Q 003205 64 ALRKLRIFNSAGVL-ISETVWKNPGGRLIG-MSWSE--DQTLICVVQDGTVYRYNIHA-ELIEPNASMGKECFEENVVEC 138 (839)
Q Consensus 64 ~~~~I~iy~~~G~l-l~ti~~~~~~~~I~~-~~fs~--de~Lv~v~~dGtv~l~~~~G-~~~~~~~g~~~~~~~~~V~~~ 138 (839)
.|+++++|...|+. +.+-...++.+-|.. +++-+ .+.|++++.|+++-+|.+.+ +...+..|| +..|..+
T Consensus 33 Rd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH-----~snVC~l 107 (745)
T KOG0301|consen 33 RDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGH-----KSNVCSL 107 (745)
T ss_pred CCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhcc-----ccceeee
Confidence 47899999996664 443333322266665 66654 45699999999999998654 458889999 8889888
Q ss_pred EEECCeEEEEecCCe-EEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc---cc
Q 003205 139 VFWGNGVVCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---KV 214 (839)
Q Consensus 139 ~~~~~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~---~~ 214 (839)
.+..+|. +++++.+ -..||...+. ...+ .+++-..|+|..- ..++.++.+.|.+|++|.-..+. .+
T Consensus 108 s~~~~~~-~iSgSWD~TakvW~~~~l-~~~l----~gH~asVWAv~~l----~e~~~vTgsaDKtIklWk~~~~l~tf~g 177 (745)
T KOG0301|consen 108 SIGEDGT-LISGSWDSTAKVWRIGEL-VYSL----QGHTASVWAVASL----PENTYVTGSADKTIKLWKGGTLLKTFSG 177 (745)
T ss_pred ecCCcCc-eEecccccceEEecchhh-hccc----CCcchheeeeeec----CCCcEEeccCcceeeeccCCchhhhhcc
Confidence 8778887 8888875 2455543221 1111 1256678998543 23489999999999999886554 67
Q ss_pred cCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCC--------CCCCceeeecCceEEEEecCE---EEE
Q 003205 215 DDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESA--------LPPEQIAWCGMDSVLLYWNDM---LVM 283 (839)
Q Consensus 215 ~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~--------~~p~~~~WcG~d~vv~~~~~~---l~l 283 (839)
|..-|..+++=|++.|+-+ +.||.|..|+.+ ++.++|+..+.. ..-..+.=||+|..+..|... -.+
T Consensus 178 HtD~VRgL~vl~~~~flSc-sNDg~Ir~w~~~-ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I 255 (745)
T KOG0301|consen 178 HTDCVRGLAVLDDSHFLSC-SNDGSIRLWDLD-GEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVI 255 (745)
T ss_pred chhheeeeEEecCCCeEee-cCCceEEEEecc-CceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEE
Confidence 8888999999999856555 679999999987 888888776531 112355668999999999862 223
Q ss_pred EcCCC--CceEeccCCCeEEeecCCc-eEEEccCc
Q 003205 284 VAPQA--EPVQYFYDEPLVLIPECDG-VRILSNSS 315 (839)
Q Consensus 284 ig~~~--~~v~f~~~~~~~l~~E~DG-vRIit~~~ 315 (839)
.-|.. .++++..+++ +++...|| |||||.++
T Consensus 256 ~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 256 TLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred ecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 33332 3566665555 45788999 99999983
No 45
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.31 E-value=2.2e-11 Score=125.98 Aligned_cols=193 Identities=16% Similarity=0.157 Sum_probs=141.6
Q ss_pred CeEEEEecCchhhhhhcccCCceEEEEcCCC-CceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeC-CCCccc
Q 003205 45 GPIAVIRDDSKIVQLYAESALRKLRIFNSAG-VLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNI-HAELIE 121 (839)
Q Consensus 45 g~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G-~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~-~G~~~~ 121 (839)
|.-.+--|+.|+|+. ..|+||+||+.+. .-+.++.+|. |.|.++.|. +. ++++++|.||++||. .|+.+.
T Consensus 199 gVYClQYDD~kiVSG---lrDnTikiWD~n~~~c~~~L~GHt--GSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 199 GVYCLQYDDEKIVSG---LRDNTIKIWDKNSLECLKILTGHT--GSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred ceEEEEecchhhhcc---cccCceEEeccccHHHHHhhhcCC--CcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 344455566677742 4699999999765 4566688999 999999994 44 689999999999996 689999
Q ss_pred cCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCC
Q 003205 122 PNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDA 201 (839)
Q Consensus 122 ~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~ 201 (839)
+.++| -+.|..++|+ +|..+-.+..+-..||+..+|....+-..-. + |-=+|+..+| |...+|.++.|.
T Consensus 272 tlihH-----ceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLv-G--HrAaVNvVdf--d~kyIVsASgDR 340 (499)
T KOG0281|consen 272 TLIHH-----CEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLV-G--HRAAVNVVDF--DDKYIVSASGDR 340 (499)
T ss_pred HHhhh-----cceeEEEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHh-h--hhhheeeecc--ccceEEEecCCc
Confidence 99999 7789988877 7777777766777888887765333221101 1 1112333455 667999999999
Q ss_pred eEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCC
Q 003205 202 GILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCE 257 (839)
Q Consensus 202 tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~ 257 (839)
||++|+.+.+. .+|...|- +.-.+|+++.+++.|.||.+|+..-+..|.-...+
T Consensus 341 TikvW~~st~efvRtl~gHkRGIA--ClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGH 399 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRTLNGHKRGIA--CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH 399 (499)
T ss_pred eEEEEeccceeeehhhhcccccce--ehhccCeEEEecCCCceEEEEeccccHHHHHHhch
Confidence 99999999876 34444442 45578999999999999999998767666544444
No 46
>PTZ00420 coronin; Provisional
Probab=99.29 E-value=1.3e-09 Score=126.78 Aligned_cols=186 Identities=9% Similarity=0.090 Sum_probs=126.1
Q ss_pred EcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCC-Ce-EEEEEeCCeEEEEeCC
Q 003205 40 CAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSED-QT-LICVVQDGTVYRYNIH 116 (839)
Q Consensus 40 ~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~d-e~-Lv~v~~dGtv~l~~~~ 116 (839)
++.++..+|+.-+ ..++...++|++|+. ....+.++.+|. +.|.++.|+|+ +. |++++.||+|++|++.
T Consensus 34 ia~n~~~~A~~w~------~~gGG~~gvI~L~~~~r~~~v~~L~gH~--~~V~~lafsP~~~~lLASgS~DgtIrIWDi~ 105 (568)
T PTZ00420 34 IACSSGFVAVPWE------VEGGGLIGAIRLENQMRKPPVIKLKGHT--SSILDLQFNPCFSEILASGSEDLTIRVWEIP 105 (568)
T ss_pred EeeCCCeEEEEEE------cCCCCceeEEEeeecCCCceEEEEcCCC--CCEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Confidence 3334457777532 123346789999984 445778888898 99999999996 44 6899999999999874
Q ss_pred -CCc-c-------ccCCCCCccccccCeEEEEEECCeE-EEEecCC-eEEEEecCCCce-EEEcCCCCCCCCCceEEEeC
Q 003205 117 -AEL-I-------EPNASMGKECFEENVVECVFWGNGV-VCVTEAN-RYFCMADFATMK-VCELARPEVEELPHCVAVIE 184 (839)
Q Consensus 117 -G~~-~-------~~~~g~~~~~~~~~V~~~~~~~~G~-v~~t~~~-~~~~v~~~~~~~-~~~l~~~~~~~~~~~w~vi~ 184 (839)
+.. . ....+| ...|..+.|+|+|. ++++++. ..+.+|++.... ...+. .... |..
T Consensus 106 t~~~~~~~i~~p~~~L~gH-----~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-----~~~~---V~S 172 (568)
T PTZ00420 106 HNDESVKEIKDPQCILKGH-----KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-----MPKK---LSS 172 (568)
T ss_pred CCCccccccccceEEeecC-----CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-----cCCc---EEE
Confidence 221 1 123456 66799999999775 4455433 356678776443 22221 1111 222
Q ss_pred CCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCce-----EEEECCCCcEEEEeecCC----eEEEEecC
Q 003205 185 PKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQ-----KMAVSPNGNFVACFTHDG----RLVVNNTN 246 (839)
Q Consensus 185 ~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~-----~ia~Spng~~iA~~~~~g----~i~i~ssd 246 (839)
..|+|+|..++..+.|++|.+||..... ..|.+.+. ...|||++++|++.+.++ +|.||+..
T Consensus 173 lswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr 248 (568)
T PTZ00420 173 LKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK 248 (568)
T ss_pred EEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence 3577799999888889999999987543 35555533 234679999999877664 79999855
No 47
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=5.4e-11 Score=118.97 Aligned_cols=231 Identities=16% Similarity=0.186 Sum_probs=160.2
Q ss_pred eccccccccCCCCCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC--CCCceeEEEecCCCCCeEEEeec
Q 003205 19 RKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS--AGVLISETVWKNPGGRLIGMSWS 96 (839)
Q Consensus 19 r~~e~y~m~w~~~~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~--~G~ll~ti~~~~~~~~I~~~~fs 96 (839)
+.+|+.+++|.+ .-+-|+.|++-.-++++- +.|++++||+. ..++|..++-|. ..|.++.|+
T Consensus 50 gi~e~~s~d~~D---~LfdV~Wse~~e~~~~~a-----------~GDGSLrl~d~~~~s~Pi~~~kEH~--~EV~Svdwn 113 (311)
T KOG0277|consen 50 GIQECQSYDTED---GLFDVAWSENHENQVIAA-----------SGDGSLRLFDLTMPSKPIHKFKEHK--REVYSVDWN 113 (311)
T ss_pred CeEEEEeeeccc---ceeEeeecCCCcceEEEE-----------ecCceEEEeccCCCCcchhHHHhhh--hheEEeccc
Confidence 345677788852 446789999887777664 36999999992 345788788777 899999999
Q ss_pred CC--CeEEEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEEEC-CeEEEEecCCe-EEEEecCCCce-EEEcCC
Q 003205 97 ED--QTLICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWG-NGVVCVTEANR-YFCMADFATMK-VCELAR 170 (839)
Q Consensus 97 ~d--e~Lv~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~~~-~~~v~~~~~~~-~~~l~~ 170 (839)
+- +.+++.+-||||++|+. .++-.+++.|| ...|..++++| .+-++++.+++ .-.+|++..|- ...++-
T Consensus 114 ~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh-----~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a 188 (311)
T KOG0277|consen 114 TVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGH-----NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA 188 (311)
T ss_pred cccceeEEeeccCCceEeecCCCCcceEeecCC-----ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe
Confidence 83 34678899999999975 34557778888 78899999998 55566665554 33566665441 112221
Q ss_pred CCCCCCCce--EEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc------cccCCCceEEEECCCC-cEEEEeecCCeEE
Q 003205 171 PEVEELPHC--VAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNG-NFVACFTHDGRLV 241 (839)
Q Consensus 171 ~~~~~~~~~--w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~Spng-~~iA~~~~~g~i~ 241 (839)
+. ..+.| |+ .| +..++++.+.|+.|+.||..... .+|.-.|.+|++||.. ..||+.+.|-|..
T Consensus 189 h~--~Eil~cdw~----ky--~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~r 260 (311)
T KOG0277|consen 189 HN--SEILCCDWS----KY--NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVR 260 (311)
T ss_pred cc--ceeEeeccc----cc--CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEE
Confidence 11 12222 32 12 66889999999999999998654 4566679999999986 5799999999999
Q ss_pred EEecCCCC-cc------ccccCC---CCCCCCceeeecCceEEEEec
Q 003205 242 VNNTNFSS-PV------IDESCE---SALPPEQIAWCGMDSVLLYWN 278 (839)
Q Consensus 242 i~ssd~~~-~l------~e~~~~---~~~~p~~~~WcG~d~vv~~~~ 278 (839)
||+-.-.+ .+ .||-.+ +.-.|.+|+=||-|..+..|+
T Consensus 261 iw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 261 IWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred ecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 99754222 22 233221 123566777777777766665
No 48
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.27 E-value=1.6e-11 Score=130.07 Aligned_cols=245 Identities=18% Similarity=0.150 Sum_probs=175.5
Q ss_pred CCceEEEEcCCCC---ceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeCC-CCccccCCCCCccccccCeEEE
Q 003205 64 ALRKLRIFNSAGV---LISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVEC 138 (839)
Q Consensus 64 ~~~~I~iy~~~G~---ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~ 138 (839)
.|..|++|+-.|. +++++.+.. |.|.++.|.+++. .+..+.|+.+++|+.+ +....+..|| ++.|..+
T Consensus 195 ~Dr~Ik~W~v~~~k~~~~~tLaGs~--g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGH-----tdkVt~a 267 (459)
T KOG0288|consen 195 SDRIIKLWNVLGEKSELISTLAGSL--GNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGH-----TDKVTAA 267 (459)
T ss_pred hhhhhhhhhcccchhhhhhhhhccC--CCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhccc-----ccceeee
Confidence 6899999998776 577888776 9999999999887 6899999999999864 5667788889 8899999
Q ss_pred EEECCeEEEEecCCe-EEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----c
Q 003205 139 VFWGNGVVCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----K 213 (839)
Q Consensus 139 ~~~~~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----~ 213 (839)
+|.-+-..+++++.+ ....|++.... ...++ + ....|-.|.. .+..++..-.|++|..||..+.. .
T Consensus 268 k~~~~~~~vVsgs~DRtiK~WDl~k~~--C~kt~-l-~~S~cnDI~~-----~~~~~~SgH~DkkvRfwD~Rs~~~~~sv 338 (459)
T KOG0288|consen 268 KFKLSHSRVVSGSADRTIKLWDLQKAY--CSKTV-L-PGSQCNDIVC-----SISDVISGHFDKKVRFWDIRSADKTRSV 338 (459)
T ss_pred hhhccccceeeccccchhhhhhhhhhh--eeccc-c-ccccccceEe-----cceeeeecccccceEEEeccCCceeeEe
Confidence 998755557776653 55667664322 22221 1 1222333322 22334444459999999976543 3
Q ss_pred ccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCCceEe
Q 003205 214 VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQY 293 (839)
Q Consensus 214 ~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f 293 (839)
.-.+.|+++.+|++|..|-+.+.|.++.+.+..-.++...|... =..||+| | .-+.|
T Consensus 339 ~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~-------g~k~asD-----w-----------trvvf 395 (459)
T KOG0288|consen 339 PLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAE-------GFKCASD-----W-----------TRVVF 395 (459)
T ss_pred ecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecc-------ccccccc-----c-----------ceeEE
Confidence 45568999999999999988899999988864422222111111 1135554 2 24778
Q ss_pred ccCCCeEEeecCCc-eEEEccCcceeeeccchhhHh--hhccCCCChhhhHHHHHHH
Q 003205 294 FYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQ--IFAIGSTSPAALLYDALDH 347 (839)
Q Consensus 294 ~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~~~~--vf~igS~~pga~L~~A~~~ 347 (839)
++++..++.+..|| |.||+..+..+-.++..++++ |+.+..++.|..|+.|.+.
T Consensus 396 Spd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~ 452 (459)
T KOG0288|consen 396 SPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQ 452 (459)
T ss_pred CCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCC
Confidence 88999999999999 999998777666666666666 9999999999999988653
No 49
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.27 E-value=3.8e-10 Score=118.16 Aligned_cols=285 Identities=12% Similarity=0.089 Sum_probs=193.9
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeE
Q 003205 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTV 110 (839)
Q Consensus 33 l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv 110 (839)
-+.+.|+.+|+-.+.|+.+ .|..-.+|+ .+|..+..+..|. +.|.+.+||.||.| +++.=+|.|
T Consensus 65 ~svFavsl~P~~~l~aTGG------------gDD~AflW~~~~ge~~~eltgHK--DSVt~~~FshdgtlLATGdmsG~v 130 (399)
T KOG0296|consen 65 DSVFAVSLHPNNNLVATGG------------GDDLAFLWDISTGEFAGELTGHK--DSVTCCSFSHDGTLLATGDMSGKV 130 (399)
T ss_pred CceEEEEeCCCCceEEecC------------CCceEEEEEccCCcceeEecCCC--CceEEEEEccCceEEEecCCCccE
Confidence 4667889999777777664 688999999 6899999999999 99999999999995 799999999
Q ss_pred EEEeCC-CCc-cccCCCCCccccccCeEEEEEECCeEEEEecC--CeEEEEecCCC-ceEEEcCCCCCCCCCceEEEeCC
Q 003205 111 YRYNIH-AEL-IEPNASMGKECFEENVVECVFWGNGVVCVTEA--NRYFCMADFAT-MKVCELARPEVEELPHCVAVIEP 185 (839)
Q Consensus 111 ~l~~~~-G~~-~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~--~~~~~v~~~~~-~~~~~l~~~~~~~~~~~w~vi~~ 185 (839)
++|... |.. .++. .+ -.+|.=.+.+|.|-+++.++ +.+| +|++.+ ...+.++- +... +-.-
T Consensus 131 ~v~~~stg~~~~~~~--~e----~~dieWl~WHp~a~illAG~~DGsvW-mw~ip~~~~~kv~~G----h~~~---ct~G 196 (399)
T KOG0296|consen 131 LVFKVSTGGEQWKLD--QE----VEDIEWLKWHPRAHILLAGSTDGSVW-MWQIPSQALCKVMSG----HNSP---CTCG 196 (399)
T ss_pred EEEEcccCceEEEee--cc----cCceEEEEecccccEEEeecCCCcEE-EEECCCcceeeEecC----CCCC---cccc
Confidence 999653 332 3322 21 12233256667888888764 4565 455543 34444432 1222 1223
Q ss_pred CCCCCCcEEEEEEeCCeEEEEecCCcc------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccC-CC
Q 003205 186 KYTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESC-ES 258 (839)
Q Consensus 186 ~~S~~~~~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~-~~ 258 (839)
.|+|||+.++.+..||+|++|+...++ .....+-.-|+++-+|..+-..+.+|...+.+...++++.-++. ..
T Consensus 197 ~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~ 276 (399)
T KOG0296|consen 197 EFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP 276 (399)
T ss_pred cccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc
Confidence 566799999999999999999988765 12244566777777877777777777766665554544432221 11
Q ss_pred ---------CCCCCceeee---------cCceEEEEecC---EEEEEcCCCC---ceEeccCCCeEEeecCCc-eEEEcc
Q 003205 259 ---------ALPPEQIAWC---------GMDSVLLYWND---MLVMVAPQAE---PVQYFYDEPLVLIPECDG-VRILSN 313 (839)
Q Consensus 259 ---------~~~p~~~~Wc---------G~d~vv~~~~~---~l~lig~~~~---~v~f~~~~~~~l~~E~DG-vRIit~ 313 (839)
......+.|| +=|..+..|+. .++-+=+..+ .++|.. .+.++..-.|| ||+|..
T Consensus 277 ~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDa 355 (399)
T KOG0296|consen 277 ELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDA 355 (399)
T ss_pred cccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeec
Confidence 1123456666 35666777764 2333323332 455544 57788899999 999999
Q ss_pred CcceeeeccchhhHhhhccCCCChhhhHHHHHH
Q 003205 314 SSMEFLQRVPASTEQIFAIGSTSPAALLYDALD 346 (839)
Q Consensus 314 ~~~~~l~~Vp~~~~~vf~igS~~pga~L~~A~~ 346 (839)
-.+.++..-..|...|+.+.-++.+..++++++
T Consensus 356 RtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~ 388 (399)
T KOG0296|consen 356 RTGQLKFTYTGHQMGILDFALSPQKRLVVTVSD 388 (399)
T ss_pred cccceEEEEecCchheeEEEEcCCCcEEEEecC
Confidence 999999999999999988776666666555443
No 50
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=1.9e-09 Score=111.01 Aligned_cols=287 Identities=14% Similarity=0.188 Sum_probs=185.1
Q ss_pred cccccccccEEeeccccccccCCCCCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeE---EEe
Q 003205 7 AAEWQLVYNRYYRKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISE---TVW 83 (839)
Q Consensus 7 ~~~W~~Lg~~~yr~~e~y~m~w~~~~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~t---i~~ 83 (839)
...|.+=+..|-..-.+..|..++ -....++||.+|..+|+.. .|++|+||+...-+... +.-
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~--~~vt~~~FsSdGK~lat~~------------~Dr~Ir~w~~~DF~~~eHr~~R~ 128 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHK--KEVTDVAFSSDGKKLATIS------------GDRSIRLWDVRDFENKEHRCIRQ 128 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccC--CceeeeEEcCCCceeEEEe------------CCceEEEEecchhhhhhhhHhhc
Confidence 445777666777666666666652 2445899999999999997 58999999987754433 333
Q ss_pred cCCCCCeEEEeecCCCe-E-EEEEeCCeEEEEeC----CCCccccCCCC---Ccc-ccccCeEEEEEECCeEEEEecCCe
Q 003205 84 KNPGGRLIGMSWSEDQT-L-ICVVQDGTVYRYNI----HAELIEPNASM---GKE-CFEENVVECVFWGNGVVCVTEANR 153 (839)
Q Consensus 84 ~~~~~~I~~~~fs~de~-L-v~v~~dGtv~l~~~----~G~~~~~~~g~---~~~-~~~~~V~~~~~~~~G~v~~t~~~~ 153 (839)
+-+.+....+.|+||.. . +.+-...++++|.+ +|.+..++..- +.+ .-+..|+++-+-++|.++++.+.+
T Consensus 129 nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~d 208 (420)
T KOG2096|consen 129 NVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLD 208 (420)
T ss_pred cccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCC
Confidence 32236778899999987 3 45556667999943 46652222210 011 115567777888999999997653
Q ss_pred -EEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEec----CCcc---------cccCCCc
Q 003205 154 -YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDE----DGVQ---------KVDDTLS 219 (839)
Q Consensus 154 -~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~----~~~~---------~~~~~~i 219 (839)
-+.+|+..+..+..+.. +......+.++| +|..++..+.--.|++|.. +|.- ++|+..|
T Consensus 209 t~i~lw~lkGq~L~~idt---nq~~n~~aavSP----~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV 281 (420)
T KOG2096|consen 209 TKICLWDLKGQLLQSIDT---NQSSNYDAAVSP----DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAV 281 (420)
T ss_pred CcEEEEecCCceeeeecc---ccccccceeeCC----CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhe
Confidence 46678776544433321 122233344544 9999998888777888753 3331 5788999
Q ss_pred eEEEECCCCcEEEEeecCCeEEEEecCCCC-------cccccc---CCCCCCCCceeee-cCceEEEEecCEEEEEcC--
Q 003205 220 QKMAVSPNGNFVACFTHDGRLVVNNTNFSS-------PVIDES---CESALPPEQIAWC-GMDSVLLYWNDMLVMVAP-- 286 (839)
Q Consensus 220 ~~ia~Spng~~iA~~~~~g~i~i~ssd~~~-------~l~e~~---~~~~~~p~~~~Wc-G~d~vv~~~~~~l~lig~-- 286 (839)
+..+||||...+++.+.||+++||++|-.- .|.++. ...-+.|--++-| .-+..++++...+.++..
T Consensus 282 ~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~ 361 (420)
T KOG2096|consen 282 LAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASED 361 (420)
T ss_pred eeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEccc
Confidence 999999999999999999999999987321 222321 1123456677777 344566677766655542
Q ss_pred -----------CCC--ceEeccCCCeEEeecCCceEEEccC
Q 003205 287 -----------QAE--PVQYFYDEPLVLIPECDGVRILSNS 314 (839)
Q Consensus 287 -----------~~~--~v~f~~~~~~~l~~E~DGvRIit~~ 314 (839)
.+. +++|..++..++.-.---+|++.++
T Consensus 362 g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~nt 402 (420)
T KOG2096|consen 362 GKDYPELEDIHSTTISSISYSSDGKYIATCGDRYVRVIRNT 402 (420)
T ss_pred CccchhHHHhhcCceeeEEecCCCcEEeeecceeeeeecCC
Confidence 111 4566555554443333347776654
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=8.7e-11 Score=134.12 Aligned_cols=237 Identities=14% Similarity=0.126 Sum_probs=179.2
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVY 111 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv~ 111 (839)
+...++|.|---+|-+.. ..++|++|++ =|++|..+.-|. |+|.++.|.|.+-| |++.+|.+|+
T Consensus 11 RvKglsFHP~rPwILtsl------------HsG~IQlWDYRM~tli~rFdeHd--GpVRgv~FH~~qplFVSGGDDykIk 76 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSL------------HSGVIQLWDYRMGTLIDRFDEHD--GPVRGVDFHPTQPLFVSGGDDYKIK 76 (1202)
T ss_pred cccceecCCCCCEEEEee------------cCceeeeehhhhhhHHhhhhccC--CccceeeecCCCCeEEecCCccEEE
Confidence 445778888766666554 4799999996 689999999999 99999999999986 8999999999
Q ss_pred EEeCCCCc-cccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCC
Q 003205 112 RYNIHAEL-IEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTM 189 (839)
Q Consensus 112 l~~~~G~~-~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~ 189 (839)
+||+...- +-+..|| -+-|.++.|++.=--+++.+. +.+.|||..+.+..-.- +.|+-.|...+|.|
T Consensus 77 VWnYk~rrclftL~GH-----lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl------tGHnHYVMcAqFhp 145 (1202)
T KOG0292|consen 77 VWNYKTRRCLFTLLGH-----LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL------TGHNHYVMCAQFHP 145 (1202)
T ss_pred EEecccceehhhhccc-----cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE------ecCceEEEeeccCC
Confidence 99986554 6678899 778999999886666777654 45788988765544332 34444577789999
Q ss_pred CCcEEEEEEeCCeEEEEecCCcc----------------------------------cccCCCceEEEECCCCcEEEEee
Q 003205 190 TGSVEVLIGTDAGILMLDEDGVQ----------------------------------KVDDTLSQKMAVSPNGNFVACFT 235 (839)
Q Consensus 190 ~~~~~v~~s~d~tv~l~~~~~~~----------------------------------~~~~~~i~~ia~Spng~~iA~~~ 235 (839)
+...+|.+|-|.||.+||..|.. .+|...|+-++|.|.-..|.+++
T Consensus 146 tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~ 225 (1202)
T KOG0292|consen 146 TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA 225 (1202)
T ss_pred ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC
Confidence 99999999999999999998643 14555677888888888888888
Q ss_pred cCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEc
Q 003205 236 HDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILS 312 (839)
Q Consensus 236 ~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit 312 (839)
+|..+++|.-+ ..+--|.| ++.||.+. ++-|.+....+++...|+ +|||.
T Consensus 226 DDRqVKlWrmn-etKaWEvD--------------------------tcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 226 DDRQVKLWRMN-ETKAWEVD--------------------------TCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred CcceeeEEEec-cccceeeh--------------------------hhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence 88888888532 11111111 23456653 677777778889999998 99999
Q ss_pred cCcceeeecc
Q 003205 313 NSSMEFLQRV 322 (839)
Q Consensus 313 ~~~~~~l~~V 322 (839)
.++-.-++..
T Consensus 279 m~kRt~v~tf 288 (1202)
T KOG0292|consen 279 MTKRTSVQTF 288 (1202)
T ss_pred cccccceeee
Confidence 8766555555
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=7e-10 Score=112.16 Aligned_cols=187 Identities=13% Similarity=0.112 Sum_probs=141.0
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC---CceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCe
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG---VLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGT 109 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G---~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGt 109 (839)
....||.+|.|..+|.++ .|.++-||...+ +-+.+|.+|. ..|.+++||++|. |++.+.|..
T Consensus 63 sVRsvAwsp~g~~La~aS------------FD~t~~Iw~k~~~efecv~~lEGHE--nEVK~Vaws~sG~~LATCSRDKS 128 (312)
T KOG0645|consen 63 SVRSVAWSPHGRYLASAS------------FDATVVIWKKEDGEFECVATLEGHE--NEVKCVAWSASGNYLATCSRDKS 128 (312)
T ss_pred eeeeeeecCCCcEEEEee------------ccceEEEeecCCCceeEEeeeeccc--cceeEEEEcCCCCEEEEeeCCCe
Confidence 445899999999999997 799999998544 4688899999 9999999999998 689999999
Q ss_pred EEEEeCC--CCc--cccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCC-CceEEEcCCCCCC-CCCceEEE
Q 003205 110 VYRYNIH--AEL--IEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFA-TMKVCELARPEVE-ELPHCVAV 182 (839)
Q Consensus 110 v~l~~~~--G~~--~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~-~~~~~~l~~~~~~-~~~~~w~v 182 (839)
|-+|-.. ++| .....+| ..+|-.+.+.|+--++++.+++ -+.++... +..-..... ++ ...+.|++
T Consensus 129 VWiWe~deddEfec~aVL~~H-----tqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~t--l~g~~~TVW~~ 201 (312)
T KOG0645|consen 129 VWIWEIDEDDEFECIAVLQEH-----TQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQT--LDGHENTVWSL 201 (312)
T ss_pred EEEEEecCCCcEEEEeeeccc-----cccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEE--ecCccceEEEE
Confidence 9999654 666 4556677 6678878888877778887663 33333222 221111111 21 34577877
Q ss_pred eCCCCCCCCcEEEEEEeCCeEEEEecCCc-ccccCCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 183 IEPKYTMTGSVEVLIGTDAGILMLDEDGV-QKVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 183 i~~~~S~~~~~~v~~s~d~tv~l~~~~~~-~~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
.|++.|+.++..+.|+||.+|..-.. ...+.+++..++.- || .||+++.|+.|.++..+
T Consensus 202 ---~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 202 ---AFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWD-NG-VIASGGGDDAIRLFKES 261 (312)
T ss_pred ---EecCCCceEEEecCCcceEeeeeccCcchhcccceEeeeec-cc-ceEeccCCCEEEEEEec
Confidence 67779999999999999999975422 25566788888887 65 99999999999888644
No 53
>PTZ00420 coronin; Provisional
Probab=99.25 E-value=1.2e-09 Score=127.07 Aligned_cols=189 Identities=9% Similarity=-0.009 Sum_probs=130.8
Q ss_pred CCCEEEEcCC-CCeEEEEecCchhhhhhcccCCceEEEEcCC-C-C-------ceeEEEecCCCCCeEEEeecCCCe--E
Q 003205 34 SRNKVACAPF-GGPIAVIRDDSKIVQLYAESALRKLRIFNSA-G-V-------LISETVWKNPGGRLIGMSWSEDQT--L 101 (839)
Q Consensus 34 ~~~~va~sp~-Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G-~-------ll~ti~~~~~~~~I~~~~fs~de~--L 101 (839)
....++++|+ |..+|+.+ .|++|+||+.. | . ++.++..|. +.|.++.|+|++. |
T Consensus 76 ~V~~lafsP~~~~lLASgS------------~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~--~~V~sVaf~P~g~~iL 141 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGS------------EDLTIRVWEIPHNDESVKEIKDPQCILKGHK--KKISIIDWNPMNYYIM 141 (568)
T ss_pred CEEEEEEcCCCCCEEEEEe------------CCCeEEEEECCCCCccccccccceEEeecCC--CcEEEEEECCCCCeEE
Confidence 5568899997 77888886 68999999963 3 2 345677787 8999999999886 3
Q ss_pred EEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEecC-CeEEEEecCCCce-EEEcCCCCCCCCC--
Q 003205 102 ICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATMK-VCELARPEVEELP-- 177 (839)
Q Consensus 102 v~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~-~~~~~v~~~~~~~-~~~l~~~~~~~~~-- 177 (839)
++++.||+|++||+......+.+.+ ...|..+.++++|-.++++. .....+|+..+.. ...+.... +..
T Consensus 142 aSgS~DgtIrIWDl~tg~~~~~i~~-----~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~--g~~~s 214 (568)
T PTZ00420 142 CSSGFDSFVNIWDIENEKRAFQINM-----PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD--GGKNT 214 (568)
T ss_pred EEEeCCCeEEEEECCCCcEEEEEec-----CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc--CCcee
Confidence 5788999999999753322223333 44688889889998888764 3345666665432 23332110 111
Q ss_pred -ceEEEeCCCCCCCCcEEEEEEeCC----eEEEEecCCcc--------cccCCCceEEEECCCCcEEEEeecCCeEEEEe
Q 003205 178 -HCVAVIEPKYTMTGSVEVLIGTDA----GILMLDEDGVQ--------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (839)
Q Consensus 178 -~~w~vi~~~~S~~~~~~v~~s~d~----tv~l~~~~~~~--------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~s 244 (839)
..|.. .||++++.++..+.++ +|.+||..... ..+.+++.-...+++|.+++++..|++|++|.
T Consensus 215 ~~v~~~---~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e 291 (568)
T PTZ00420 215 KNIWID---GLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQ 291 (568)
T ss_pred EEEEee---eEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEE
Confidence 12432 4567999999888764 79999988432 12234444555678899999999999999998
Q ss_pred cC
Q 003205 245 TN 246 (839)
Q Consensus 245 sd 246 (839)
..
T Consensus 292 ~~ 293 (568)
T PTZ00420 292 HS 293 (568)
T ss_pred cc
Confidence 65
No 54
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.23 E-value=1.8e-09 Score=107.04 Aligned_cols=195 Identities=13% Similarity=0.088 Sum_probs=148.7
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCC-eEEEEEeCCeEEEE
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQ-TLICVVQDGTVYRY 113 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de-~Lv~v~~dGtv~l~ 113 (839)
..|-+.-+|....+.. .+.+|++||+ .|.+|.+-.+|. ..|.+.+-+.|. ++++...|..|.+|
T Consensus 21 ~avryN~dGnY~ltcG------------sdrtvrLWNp~rg~liktYsghG--~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 21 RAVRYNVDGNYCLTCG------------SDRTVRLWNPLRGALIKTYSGHG--HEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred EEEEEccCCCEEEEcC------------CCceEEeecccccceeeeecCCC--ceeeeccccccccccccCCCCceEEEE
Confidence 3555666666655554 5899999995 999999999998 889999988765 68999999999999
Q ss_pred eC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCC--CceEEEcCCCCCCCCCceEEEeCCCCCC
Q 003205 114 NI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFA--TMKVCELARPEVEELPHCVAVIEPKYTM 189 (839)
Q Consensus 114 ~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~--~~~~~~l~~~~~~~~~~~w~vi~~~~S~ 189 (839)
|. .|+....+.|| ...|.+++|..+.-++++++.+ -..+|+-. ++.|.++-+-.. ....+-.+
T Consensus 87 DV~TGkv~Rr~rgH-----~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~-D~V~Si~v------- 153 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGH-----LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK-DGVSSIDV------- 153 (307)
T ss_pred EcccCeeeeecccc-----cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc-CceeEEEe-------
Confidence 95 79998889999 6779999999999999998765 23444332 233333322111 12232222
Q ss_pred CCcEEEEEEeCCeEEEEecC-Ccc--cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCC
Q 003205 190 TGSVEVLIGTDAGILMLDED-GVQ--KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCE 257 (839)
Q Consensus 190 ~~~~~v~~s~d~tv~l~~~~-~~~--~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~ 257 (839)
.+.-++..+.||++..+|.. |.. .--..||+.++|||+|+.....+-++++.+.+.+.++.|.+|..+
T Consensus 154 ~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGh 224 (307)
T KOG0316|consen 154 AEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGH 224 (307)
T ss_pred cccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccc
Confidence 55677788889999999977 443 334689999999999999999899999999999888888887765
No 55
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.22 E-value=1.3e-10 Score=115.96 Aligned_cols=188 Identities=15% Similarity=0.141 Sum_probs=134.6
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC--CceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEE
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG--VLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRY 113 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G--~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~ 113 (839)
.+||+.+...+.+.+ .+..+|||+.+- .+...+..|. +.|..+-|-..++ +++.++|+|||+|
T Consensus 105 ~~af~~ds~~lltgg------------~ekllrvfdln~p~App~E~~ght--g~Ir~v~wc~eD~~iLSSadd~tVRLW 170 (334)
T KOG0278|consen 105 AVAFSQDSNYLLTGG------------QEKLLRVFDLNRPKAPPKEISGHT--GGIRTVLWCHEDKCILSSADDKTVRLW 170 (334)
T ss_pred eEEecccchhhhccc------------hHHHhhhhhccCCCCCchhhcCCC--CcceeEEEeccCceEEeeccCCceEEE
Confidence 566666655555544 467889998654 4677788888 9999999998776 6788999999999
Q ss_pred e-CCCCccccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCc
Q 003205 114 N-IHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGS 192 (839)
Q Consensus 114 ~-~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~ 192 (839)
| ..|+..+... . ...|.++.++++|-.+.+..+.-+..|+.++.. .|.+ . .-|- .|-+...+|+..
T Consensus 171 D~rTgt~v~sL~-~-----~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~--~lKs--~-k~P~--nV~SASL~P~k~ 237 (334)
T KOG0278|consen 171 DHRTGTEVQSLE-F-----NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFG--LLKS--Y-KMPC--NVESASLHPKKE 237 (334)
T ss_pred EeccCcEEEEEe-c-----CCCCcceeeccCCCEEEEecCceeEEecccccc--ceee--c-cCcc--ccccccccCCCc
Confidence 8 6787744322 1 345788999999998888877655555543321 1221 0 1111 233344555777
Q ss_pred EEEEEEeCCeEEEEecCC-cc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcc
Q 003205 193 VEVLIGTDAGILMLDEDG-VQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPV 251 (839)
Q Consensus 193 ~~v~~s~d~tv~l~~~~~-~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l 251 (839)
+.|-.+.|.-+|.+|-+. .. ++|.+||+.+.|||+|..-|++++||+|.+|...-.+..
T Consensus 238 ~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 238 FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 777777788888888652 22 688999999999999999999999999999987755554
No 56
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.21 E-value=5.5e-10 Score=120.99 Aligned_cols=187 Identities=11% Similarity=0.061 Sum_probs=143.8
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCcee-EEEecCCCCCeEEEeecC-CCe-EEEEEeCCe
Q 003205 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLIS-ETVWKNPGGRLIGMSWSE-DQT-LICVVQDGT 109 (839)
Q Consensus 33 l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~-ti~~~~~~~~I~~~~fs~-de~-Lv~v~~dGt 109 (839)
.....+-|+|+++.+++..+ .|.++++|+.++.-+. .+..|. +-|.+.+|+| +++ +++++.||+
T Consensus 111 apv~~~~f~~~d~t~l~s~s-----------Dd~v~k~~d~s~a~v~~~l~~ht--DYVR~g~~~~~~~hivvtGsYDg~ 177 (487)
T KOG0310|consen 111 APVHVTKFSPQDNTMLVSGS-----------DDKVVKYWDLSTAYVQAELSGHT--DYVRCGDISPANDHIVVTGSYDGK 177 (487)
T ss_pred CceeEEEecccCCeEEEecC-----------CCceEEEEEcCCcEEEEEecCCc--ceeEeeccccCCCeEEEecCCCce
Confidence 34457889999999998874 5899999998887664 688888 9999999999 455 479999999
Q ss_pred EEEEeCCCC-ccccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCceEEEcCCCC-CCCCCceEEEeCCCC
Q 003205 110 VYRYNIHAE-LIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPE-VEELPHCVAVIEPKY 187 (839)
Q Consensus 110 v~l~~~~G~-~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~-~~~~~~~w~vi~~~~ 187 (839)
||+||..-. -....+.| ...|-.+-+-|+|-.++|..|+.+.||+..+.. +.+.... -..+.+|.....
T Consensus 178 vrl~DtR~~~~~v~elnh-----g~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~-qll~~~~~H~KtVTcL~l~s--- 248 (487)
T KOG0310|consen 178 VRLWDTRSLTSRVVELNH-----GCPVESVLALPSGSLIASAGGNSVKVWDLTTGG-QLLTSMFNHNKTVTCLRLAS--- 248 (487)
T ss_pred EEEEEeccCCceeEEecC-----CCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc-eehhhhhcccceEEEEEeec---
Confidence 999985432 22334445 345677888999999999999999999986321 1222211 113466665543
Q ss_pred CCCCcEEEEEEeCCeEEEEecCCcc----cccCCCceEEEECCCCcEEEEeecCCeEEEE
Q 003205 188 TMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVN 243 (839)
Q Consensus 188 S~~~~~~v~~s~d~tv~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ 243 (839)
+++-++.++-|+.|++++.++-+ ..-.+||.+|++||+++.++.+..||.+.+.
T Consensus 249 --~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 249 --DSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred --CCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeee
Confidence 77888899999999999977654 3457899999999999999999999998776
No 57
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.21 E-value=1.8e-09 Score=112.74 Aligned_cols=184 Identities=17% Similarity=0.114 Sum_probs=143.7
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVY 111 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~ 111 (839)
....|++-|+....|+.+ .|++|+||+ .+|+|..++.+|. ..+.++.+|+--- |+++.+|+.|+
T Consensus 153 WVr~vavdP~n~wf~tgs------------~DrtikIwDlatg~LkltltGhi--~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATGS------------ADRTIKIWDLATGQLKLTLTGHI--ETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred eEEEEeeCCCceeEEecC------------CCceeEEEEcccCeEEEeecchh--heeeeeeecccCceEEEecCCCeeE
Confidence 345889999999999875 699999999 6999999999999 9999999998765 78999999999
Q ss_pred EEeCC-CCccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCC-ceEEEcCCCCCCCCCceEEEeCCCCC
Q 003205 112 RYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFAT-MKVCELARPEVEELPHCVAVIEPKYT 188 (839)
Q Consensus 112 l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~-~~~~~l~~~~~~~~~~~w~vi~~~~S 188 (839)
-||+. .+++....|| -.+|....++|+=-+++|++.+ ...||++.. ..+..|.- +....-.| .+.
T Consensus 219 CwDLe~nkvIR~YhGH-----lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G----H~~~V~~V---~~~ 286 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGH-----LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG----HTNPVASV---MCQ 286 (460)
T ss_pred EEechhhhhHHHhccc-----cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC----CCCcceeE---Eee
Confidence 99974 5667888899 7789999999988899998876 577888753 23334431 22111122 222
Q ss_pred CCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEe
Q 003205 189 MTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (839)
Q Consensus 189 ~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~s 244 (839)
|....++..+.|+||.+||+.... ..|...+..++..|.-...|+++.| +|+-|+
T Consensus 287 ~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~ 346 (460)
T KOG0285|consen 287 PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWK 346 (460)
T ss_pred cCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceecc
Confidence 245568899999999999987443 4677889999999998888988866 566665
No 58
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.19 E-value=5e-10 Score=118.64 Aligned_cols=249 Identities=14% Similarity=0.134 Sum_probs=171.3
Q ss_pred EEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEe--CCCCc--cccCCCCCccccccCeEEEEEECCeEEEEe-cCCeE
Q 003205 81 TVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYN--IHAEL--IEPNASMGKECFEENVVECVFWGNGVVCVT-EANRY 154 (839)
Q Consensus 81 i~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~--~~G~~--~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t-~~~~~ 154 (839)
+.-|. +.|+.+.||++|+ |++++.|.|.-+|. .++++ ..+..|| ...|.-+.++|+.--+++ +....
T Consensus 220 l~~ht--dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh-----~~~V~yi~wSPDdryLlaCg~~e~ 292 (519)
T KOG0293|consen 220 LQDHT--DEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGH-----SQPVSYIMWSPDDRYLLACGFDEV 292 (519)
T ss_pred HhhCC--CcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecc-----cCceEEEEECCCCCeEEecCchHh
Confidence 45566 8999999999998 79999999999994 45554 6678888 788999999996555555 44455
Q ss_pred EEEecCCCceEEEcCCCCCCCCC--ceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCC
Q 003205 155 FCMADFATMKVCELARPEVEELP--HCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPN 227 (839)
Q Consensus 155 ~~v~~~~~~~~~~l~~~~~~~~~--~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spn 227 (839)
..+|+........+...+.+..+ -+|+. ||.-.|..+.|++++.|+.+|.. ......|+.|+++||
T Consensus 293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-------Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~D 365 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-------DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYD 365 (519)
T ss_pred eeeccCCcchhhhhcccCcCCCcceeEEcc-------CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCC
Confidence 66777775544444332332222 23543 99999999999999999999986 233345999999999
Q ss_pred CcEEEEeecCCeEEEEecCCCCccccccC-CCCCCCCceeeecCceEEE---------EecCE-----EEEEcCCCC-ce
Q 003205 228 GNFVACFTHDGRLVVNNTNFSSPVIDESC-ESALPPEQIAWCGMDSVLL---------YWNDM-----LVMVAPQAE-PV 291 (839)
Q Consensus 228 g~~iA~~~~~g~i~i~ssd~~~~l~e~~~-~~~~~p~~~~WcG~d~vv~---------~~~~~-----l~lig~~~~-~v 291 (839)
|+.+.+.+.|..|.+++-- ... +... ..+.+...+.-.++.-.++ .|+-+ ....|+... .+
T Consensus 366 gk~vl~v~~d~~i~l~~~e--~~~-dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fi 442 (519)
T KOG0293|consen 366 GKYVLLVTVDKKIRLYNRE--ARV-DRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFI 442 (519)
T ss_pred CcEEEEEecccceeeechh--hhh-hhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceE
Confidence 9999999999999998632 111 1111 1122334444445443333 23311 133455443 11
Q ss_pred ---Eec-cCCCeEEeecCCc-eEEEccCcceeeeccchhhHhhhccCCCCh-hhhHHHHHH
Q 003205 292 ---QYF-YDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIGSTSP-AALLYDALD 346 (839)
Q Consensus 292 ---~f~-~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~~~~vf~igS~~p-ga~L~~A~~ 346 (839)
.|- ++..+++++..|+ |+||...+..++..+|+|+-.|--+...+. -.|+.+|++
T Consensus 443 IrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasD 503 (519)
T KOG0293|consen 443 IRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASD 503 (519)
T ss_pred EEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCC
Confidence 232 2457889999998 999999999999999999988877765533 467777765
No 59
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.18 E-value=2e-09 Score=124.59 Aligned_cols=241 Identities=14% Similarity=0.129 Sum_probs=178.1
Q ss_pred CCceEEEEc-CCCCceeE-EEecCCCCCeEEEeecC-CCeEEEEEeCCeEEEEe-CCCCccccCCCCCccccccCeEEEE
Q 003205 64 ALRKLRIFN-SAGVLISE-TVWKNPGGRLIGMSWSE-DQTLICVVQDGTVYRYN-IHAELIEPNASMGKECFEENVVECV 139 (839)
Q Consensus 64 ~~~~I~iy~-~~G~ll~t-i~~~~~~~~I~~~~fs~-de~Lv~v~~dGtv~l~~-~~G~~~~~~~g~~~~~~~~~V~~~~ 139 (839)
.+++|++|+ ..|..+.+ +.+|. +.|.++.|.. +..|++++.|.|+|+|| -.|+......|| +..|..
T Consensus 226 ~~~tl~~~~~~~~~~i~~~l~GH~--g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh-----~stv~~-- 296 (537)
T KOG0274|consen 226 DDSTLHLWDLNNGYLILTRLVGHF--GGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGH-----TSSVRC-- 296 (537)
T ss_pred CCceeEEeecccceEEEeeccCCC--CCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCC-----CceEEE--
Confidence 689999999 58899988 99999 9999999987 44589999999999998 478888778888 555553
Q ss_pred EECCeEEEEecCCe-EEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----c
Q 003205 140 FWGNGVVCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----K 213 (839)
Q Consensus 140 ~~~~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~ 213 (839)
+.-.+..+++++.+ ...||++..+....+-.. -.....|..+ ++..+|..+.|++|.+|+....+ .
T Consensus 297 ~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~-h~~~V~~v~~-------~~~~lvsgs~d~~v~VW~~~~~~cl~sl~ 368 (537)
T KOG0274|consen 297 LTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRG-HTGPVNCVQL-------DEPLLVSGSYDGTVKVWDPRTGKCLKSLS 368 (537)
T ss_pred EEccCceEeeccCCceEEEEeccCcceEEEecc-ccccEEEEEe-------cCCEEEEEecCceEEEEEhhhceeeeeec
Confidence 33455566665553 567888876654443220 1122343333 68899999999999999987433 6
Q ss_pred ccCCCceEEEECCCCcEEEEeecCCeEEEEecCCC-CccccccCCCC------CCCCceeeecCceEEEEecC-----EE
Q 003205 214 VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFS-SPVIDESCESA------LPPEQIAWCGMDSVLLYWND-----ML 281 (839)
Q Consensus 214 ~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~-~~l~e~~~~~~------~~p~~~~WcG~d~vv~~~~~-----~l 281 (839)
+|.++|..+.+.+. ..+..++.|++|++|+-.-. +.+..+..+.. .....+.+|+-|..+..|+. .-
T Consensus 369 gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~ 447 (537)
T KOG0274|consen 369 GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLR 447 (537)
T ss_pred CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceee
Confidence 79999999999887 79999999999999986644 55555544432 23457788899999999953 23
Q ss_pred EEEcCCCCceEeccCC-CeEEeecCCc-eEEEccCcceeeecc
Q 003205 282 VMVAPQAEPVQYFYDE-PLVLIPECDG-VRILSNSSMEFLQRV 322 (839)
Q Consensus 282 ~lig~~~~~v~f~~~~-~~~l~~E~DG-vRIit~~~~~~l~~V 322 (839)
.+-|+.-..+.+-..+ ..++.+--|| ++++.-..+.+.+++
T Consensus 448 ~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 448 TLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred eeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhhhh
Confidence 4555432355555444 7788888888 999999999999887
No 60
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=2.6e-09 Score=110.49 Aligned_cols=202 Identities=15% Similarity=0.167 Sum_probs=132.0
Q ss_pred EEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCC-eEEEEEeCCeEEEEeC
Q 003205 38 VACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQ-TLICVVQDGTVYRYNI 115 (839)
Q Consensus 38 va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de-~Lv~v~~dGtv~l~~~ 115 (839)
+..=+||--.|..-..+..+.....-.+.+||.-+. +-+-|.-+++|. ..|+++.-+|-| ..++++-|+|||+||+
T Consensus 52 i~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~--~~V~sL~~sP~~d~FlS~S~D~tvrLWDl 129 (311)
T KOG1446|consen 52 INSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHK--KRVNSLSVSPKDDTFLSSSLDKTVRLWDL 129 (311)
T ss_pred eecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCC--ceEEEEEecCCCCeEEecccCCeEEeeEe
Confidence 333334544444433333332222234788888885 456788899999 999999999955 5799999999999997
Q ss_pred CCCccccCCCCCccccccCeEEEEEECCeEEEEecCCe----EEEEecCC-CceEEEcCCCCCC-CCCceEEEeCCCCCC
Q 003205 116 HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR----YFCMADFA-TMKVCELARPEVE-ELPHCVAVIEPKYTM 189 (839)
Q Consensus 116 ~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~----~~~v~~~~-~~~~~~l~~~~~~-~~~~~w~vi~~~~S~ 189 (839)
.-+-.+-.+.. ....+ +++-|.|++++.+.+. +|-+..++ +|. ..+. ++ ....-|+.+ .|||
T Consensus 130 R~~~cqg~l~~-----~~~pi-~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF-~tf~---i~~~~~~ew~~l--~FS~ 197 (311)
T KOG1446|consen 130 RVKKCQGLLNL-----SGRPI-AAFDPEGLIFALANGSELIKLYDLRSFDKGPF-TTFS---ITDNDEAEWTDL--EFSP 197 (311)
T ss_pred cCCCCceEEec-----CCCcc-eeECCCCcEEEEecCCCeEEEEEecccCCCCc-eeEc---cCCCCccceeee--EEcC
Confidence 63222211111 11222 6788899999998664 45555554 332 2222 21 233448665 6999
Q ss_pred CCcEEEEEEeCCeEEEEec-CCcc----cccC--CCc-eEEEECCCCcEEEEeecCCeEEEEecCCCCcccc
Q 003205 190 TGSVEVLIGTDAGILMLDE-DGVQ----KVDD--TLS-QKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVID 253 (839)
Q Consensus 190 ~~~~~v~~s~d~tv~l~~~-~~~~----~~~~--~~i-~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e 253 (839)
||+.+++-...+.++++|. +|.. .... +.+ ..-+|+|||+||-.++.||+|.+|+-.-+.....
T Consensus 198 dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 198 DGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAV 269 (311)
T ss_pred CCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeE
Confidence 9999999999998899874 4543 1111 111 5678999999999999999999998754544433
No 61
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.18 E-value=1.9e-09 Score=115.07 Aligned_cols=237 Identities=11% Similarity=0.116 Sum_probs=160.3
Q ss_pred CCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeEEEEeCCC-CccccCCCCCccccccCeEEEEE
Q 003205 64 ALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNIHA-ELIEPNASMGKECFEENVVECVF 140 (839)
Q Consensus 64 ~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv~l~~~~G-~~~~~~~g~~~~~~~~~V~~~~~ 140 (839)
.|.++-+|+ .+++.+.++++|. -.|.++-|+++..+ ++++.|-.+|+|+..- .-.+.+..| +..|.....
T Consensus 239 ~d~~av~~d~~s~q~l~~~~Gh~--kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h-----~~~V~~ls~ 311 (506)
T KOG0289|consen 239 EDKTAVLFDKPSNQILATLKGHT--KKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPH-----EEPVTGLSL 311 (506)
T ss_pred CCCceEEEecchhhhhhhccCcc--eEEEEEEeccchhheeecCCcceEEeeccccccCccccccc-----cccceeeee
Confidence 566777888 6888999999999 99999999999886 6999999999996432 234456667 788999999
Q ss_pred ECCeEEEEecCCe-EEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cc
Q 003205 141 WGNGVVCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KV 214 (839)
Q Consensus 141 ~~~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~ 214 (839)
.++|-.++..+.+ -|...++.+........ . ..+.-.+-+..|.|||-...+...|+.|.+||..+.. ++
T Consensus 312 h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs--~--~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg 387 (506)
T KOG0289|consen 312 HPTGEYLLSASNDGTWAFSDISSGSQLTVVS--D--ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG 387 (506)
T ss_pred ccCCcEEEEecCCceEEEEEccCCcEEEEEe--e--ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC
Confidence 9999999988775 56666666433222111 1 1111112233566799999999999999999988664 68
Q ss_pred cCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCC---------ceeeecCceEEEEe-------c
Q 003205 215 DDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPE---------QIAWCGMDSVLLYW-------N 278 (839)
Q Consensus 215 ~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~---------~~~WcG~d~vv~~~-------~ 278 (839)
|.+||..|+||-||=++|+.++||.+++|+---...+..|......... -|.--|+|-.|..+ +
T Consensus 388 ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~ 467 (506)
T KOG0289|consen 388 HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWT 467 (506)
T ss_pred CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccce
Confidence 9999999999999999999999999999974322233233322211222 22223666555443 3
Q ss_pred CEEEEEcCCC--CceEeccCCCeEEeecCCc-eEEE
Q 003205 279 DMLVMVAPQA--EPVQYFYDEPLVLIPECDG-VRIL 311 (839)
Q Consensus 279 ~~l~lig~~~--~~v~f~~~~~~~l~~E~DG-vRIi 311 (839)
....+--+.| ..|.|.-....+..+.+|- +|++
T Consensus 468 ~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 468 EIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred eeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 2222222222 3566654455666666664 5554
No 62
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.17 E-value=4e-09 Score=106.23 Aligned_cols=191 Identities=16% Similarity=0.246 Sum_probs=134.4
Q ss_pred CCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEE
Q 003205 64 ALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFW 141 (839)
Q Consensus 64 ~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~ 141 (839)
.+.+|++|+ .+|+.+..+.-.. ++| .+.|+|+|+ .+++..|.-|...+..-.-...... +...|.++.+|
T Consensus 85 ~dk~ir~wd~r~~k~~~~i~~~~--eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-----~~~e~ne~~w~ 156 (313)
T KOG1407|consen 85 GDKTIRIWDIRSGKCTARIETKG--ENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-----FKFEVNEISWN 156 (313)
T ss_pred CCceEEEEEeccCcEEEEeeccC--cce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-----ccceeeeeeec
Confidence 688999999 6999999998765 554 577888776 5788888888877654221111111 13346667776
Q ss_pred C-CeEEEEecC-CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cc
Q 003205 142 G-NGVVCVTEA-NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KV 214 (839)
Q Consensus 142 ~-~G~v~~t~~-~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~ 214 (839)
. +-+.++|.. |.+-.+. + |.++++.++.. ++..|.+| .|+|+|...++.+.|.-+-|||.++.. .-
T Consensus 157 ~~nd~Fflt~GlG~v~ILs-y--psLkpv~si~A-H~snCicI---~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR 229 (313)
T KOG1407|consen 157 NSNDLFFLTNGLGCVEILS-Y--PSLKPVQSIKA-HPSNCICI---EFDPDGRYFATGSADALVSLWDVDELICERCISR 229 (313)
T ss_pred CCCCEEEEecCCceEEEEe-c--ccccccccccc-CCcceEEE---EECCCCceEeeccccceeeccChhHhhhheeecc
Confidence 5 555566654 4433322 1 33333333222 45667776 677799999999999999999999753 44
Q ss_pred cCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCc
Q 003205 215 DDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMD 271 (839)
Q Consensus 215 ~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d 271 (839)
..-||..++||.||++||++++|.-|-|-...-++.+.|.... ++-..++|--.-
T Consensus 230 ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~--~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 230 LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE--GPTFTVAWHPKR 284 (313)
T ss_pred ccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc--CCceeEEecCCC
Confidence 6789999999999999999999999999887778888776655 355688887543
No 63
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.16 E-value=4.4e-10 Score=117.48 Aligned_cols=261 Identities=15% Similarity=0.158 Sum_probs=180.1
Q ss_pred CeEEEEecCchhhhhhcccCCceEEEEcCCC-CceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCCCCccccC
Q 003205 45 GPIAVIRDDSKIVQLYAESALRKLRIFNSAG-VLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPN 123 (839)
Q Consensus 45 g~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G-~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~~~~~ 123 (839)
|.=+++++|.++..+..++.||.|+|||.+- ..+.++..|. |.|.+++++. +..+++++|.||+.|.+.|....+.
T Consensus 68 GV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~--G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~p~~ti 144 (433)
T KOG0268|consen 68 GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHE--GLVRGICVTQ-TSFFTVGDDKTVKQWKIDGPPLHTI 144 (433)
T ss_pred ccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeeccc--CceeeEEecc-cceEEecCCcceeeeeccCCcceee
Confidence 4456677888877777778999999999654 6789999999 9999999996 8899999999999999999776666
Q ss_pred CCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCC-cEEEEEEeCCe
Q 003205 124 ASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTG-SVEVLIGTDAG 202 (839)
Q Consensus 124 ~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~-~~~v~~s~d~t 202 (839)
+|. ..+.++.-...+-+++|...++ .+|+.. +..++.+... +.++.-++ .|+|-. +.++..+.|++
T Consensus 145 lg~------s~~~gIdh~~~~~~FaTcGe~i-~IWD~~--R~~Pv~smsw-G~Dti~sv---kfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 145 LGK------SVYLGIDHHRKNSVFATCGEQI-DIWDEQ--RDNPVSSMSW-GADSISSV---KFNPVETSILASCASDRS 211 (433)
T ss_pred ecc------ccccccccccccccccccCcee-eecccc--cCCccceeec-CCCceeEE---ecCCCcchheeeeccCCc
Confidence 654 2344444444455555655443 455532 1112222222 22321222 344444 35556667999
Q ss_pred EEEEecCCccc----ccCCCceEEEECCCCcEEEEeecCCeEEEEec-CCCCccccccCCCCCCCCceeee--cCceEEE
Q 003205 203 ILMLDEDGVQK----VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNT-NFSSPVIDESCESALPPEQIAWC--GMDSVLL 275 (839)
Q Consensus 203 v~l~~~~~~~~----~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ss-d~~~~l~e~~~~~~~~p~~~~Wc--G~d~vv~ 275 (839)
|+++|.....+ ...-.=+.|+++|++-....+++|.+++.++- .+.+.+.-|..+. +...++.+. |.+-|.-
T Consensus 212 IvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhv-sAV~dVdfsptG~Efvsg 290 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHV-SAVMDVDFSPTGQEFVSG 290 (433)
T ss_pred eEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccc-eeEEEeccCCCcchhccc
Confidence 99999886541 11223468999998877888899999888763 3455555454442 345666665 8888888
Q ss_pred EecCEEEEEcCCCC---------------ceEeccCCCeEEeecCCc-eEEEccCcceeeecc
Q 003205 276 YWNDMLVMVAPQAE---------------PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRV 322 (839)
Q Consensus 276 ~~~~~l~lig~~~~---------------~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~V 322 (839)
+|+..+.+++.... .|.|+-|+..++++.=|| ||+|-....|=|..+
T Consensus 291 syDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 291 SYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred cccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence 99999999885432 388988999999999998 999998865555433
No 64
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.16 E-value=2.1e-09 Score=108.49 Aligned_cols=255 Identities=13% Similarity=0.082 Sum_probs=176.7
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEe
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYN 114 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~ 114 (839)
-|-+..+|-++=... -|.++.+|-+ +|..|++..+|. |.|++++-+-+.. |++.+.|.++++||
T Consensus 15 qiKyN~eGDLlFsca------------KD~~~~vw~s~nGerlGty~GHt--GavW~~Did~~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 15 QIKYNREGDLLFSCA------------KDSTPTVWYSLNGERLGTYDGHT--GAVWCCDIDWDSKHLITGSADQTAKLWD 80 (327)
T ss_pred eEEecCCCcEEEEec------------CCCCceEEEecCCceeeeecCCC--ceEEEEEecCCcceeeeccccceeEEEE
Confidence 455666777766664 3677777776 999999999999 9999999887775 79999999999998
Q ss_pred C-CCCccccCCCCCccccccCeEEEEEECCeEEEEec-CC--------eEEEEecCC----Cce-EEEcCCCCCCCCCce
Q 003205 115 I-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTE-AN--------RYFCMADFA----TMK-VCELARPEVEELPHC 179 (839)
Q Consensus 115 ~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~-~~--------~~~~v~~~~----~~~-~~~l~~~~~~~~~~~ 179 (839)
. .|+.+-..- . ...|..+.|+.+|-.++.. +. .++.+.+-. +.. ...++.+. +.+
T Consensus 81 v~tGk~la~~k-~-----~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~--ski-- 150 (327)
T KOG0643|consen 81 VETGKQLATWK-T-----NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD--SKI-- 150 (327)
T ss_pred cCCCcEEEEee-c-----CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc--cce--
Confidence 4 688743222 1 3357888888866554442 21 233333211 101 11222110 111
Q ss_pred EEEeCCCCCCCCcEEEEEEeCCeEEEEecCCc-c-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcccc
Q 003205 180 VAVIEPKYTMTGSVEVLIGTDAGILMLDEDGV-Q-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVID 253 (839)
Q Consensus 180 w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~-~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e 253 (839)
...-++|-++.++....+|.|-.||.... + ..|...|+.|.+|||..+..+.+.|.+-++|+..--+++..
T Consensus 151 ---t~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kt 227 (327)
T KOG0643|consen 151 ---TSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKT 227 (327)
T ss_pred ---eeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEE
Confidence 11225568899999999999999997753 3 56778899999999999999999999999998775666666
Q ss_pred ccCCCC------CCCCceeee--cCceEEEEe-----------------cC-EEEEEcCCCC--ceEeccCCCeEEeecC
Q 003205 254 ESCESA------LPPEQIAWC--GMDSVLLYW-----------------ND-MLVMVAPQAE--PVQYFYDEPLVLIPEC 305 (839)
Q Consensus 254 ~~~~~~------~~p~~~~Wc--G~d~vv~~~-----------------~~-~l~lig~~~~--~v~f~~~~~~~l~~E~ 305 (839)
|.+... .+..+..-| |.+|--+.- ++ .-.+-||.|. +|-|.+++..+.+...
T Consensus 228 y~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGE 307 (327)
T KOG0643|consen 228 YTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGE 307 (327)
T ss_pred eeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCC
Confidence 655421 222344555 455544431 11 2368889886 8999999999999999
Q ss_pred Cc-eEEEccCccee
Q 003205 306 DG-VRILSNSSMEF 318 (839)
Q Consensus 306 DG-vRIit~~~~~~ 318 (839)
|| |||..=++.+|
T Consensus 308 DG~VR~h~Fd~~YF 321 (327)
T KOG0643|consen 308 DGYVRLHHFDSNYF 321 (327)
T ss_pred CceEEEEEeccchh
Confidence 99 99987665554
No 65
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.16 E-value=1.2e-09 Score=117.49 Aligned_cols=186 Identities=15% Similarity=0.107 Sum_probs=142.2
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCC-CeEEEEEeCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSED-QTLICVVQDGTVY 111 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~d-e~Lv~v~~dGtv~ 111 (839)
....+|+||+|..+|+.. .++.|+||+. +++.+..++.|. +.|.+++|-.. .+|.+++.|++|+
T Consensus 204 eil~~avS~Dgkylatgg------------~d~~v~Iw~~~t~ehv~~~~ghr--~~V~~L~fr~gt~~lys~s~Drsvk 269 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGG------------RDRHVQIWDCDTLEHVKVFKGHR--GAVSSLAFRKGTSELYSASADRSVK 269 (479)
T ss_pred eeEEEEEcCCCcEEEecC------------CCceEEEecCcccchhhcccccc--cceeeeeeecCccceeeeecCCceE
Confidence 345899999999999986 6899999996 789999999999 99999999975 4699999999999
Q ss_pred EEeCC-CCccccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCC
Q 003205 112 RYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTM 189 (839)
Q Consensus 112 l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~ 189 (839)
+|+.+ -.+.++.+|| +..|..+....-+-++..+.. +-..+|.+.+ ..+.+..++ .+.+.|-+.|+
T Consensus 270 vw~~~~~s~vetlyGH-----qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~-~~sidcv~~In----- 337 (479)
T KOG0299|consen 270 VWSIDQLSYVETLYGH-----QDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGG-EGSIDCVAFIN----- 337 (479)
T ss_pred EEehhHhHHHHHHhCC-----ccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCC-CCCeeeEEEec-----
Confidence 99864 4568899999 899998888776666655532 2344444421 122222222 24577777774
Q ss_pred CCcEEEEEEeCCeEEEEecCCcc---------cccC--------CCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 190 TGSVEVLIGTDAGILMLDEDGVQ---------KVDD--------TLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 190 ~~~~~v~~s~d~tv~l~~~~~~~---------~~~~--------~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
..-.|+.+.+|+|.||+..... .... -+|+++++.|....+|+++.+|.+++|...
T Consensus 338 -~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 338 -DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred -ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence 3567888999999999987543 1111 278999999999999999999998888643
No 66
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.14 E-value=2.5e-08 Score=107.34 Aligned_cols=244 Identities=15% Similarity=0.195 Sum_probs=148.8
Q ss_pred CCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCe-E-EEEEeCCeEEEEeCC-CCccccCCCCCccccccCeEEEE
Q 003205 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-L-ICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECV 139 (839)
Q Consensus 64 ~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~-L-v~v~~dGtv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~ 139 (839)
.++.|++|+. +|+.+.++..+ +.+.++.|+|++. + ++...++++++|+.. |+.......+ ..+..+.
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~---~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~------~~~~~~~ 79 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVG---QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG------PDPELFA 79 (300)
T ss_pred CCCEEEEEECCCCceEEEEECC---CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC------CCccEEE
Confidence 5789999996 67888888754 4467899999987 4 455678999999865 5553322212 2234567
Q ss_pred EECCeEEE-EecC-CeEEEEecCCCceE-EEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCC-eEEEEecCCcc---
Q 003205 140 FWGNGVVC-VTEA-NRYFCMADFATMKV-CELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDA-GILMLDEDGVQ--- 212 (839)
Q Consensus 140 ~~~~G~v~-~t~~-~~~~~v~~~~~~~~-~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~-tv~l~~~~~~~--- 212 (839)
++++|-.+ ++.. .....+++...... ..+. .+..+.+ + .++|+|..++..+.++ .++.|+..+..
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~---~~~~~~~--~---~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~ 151 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIP---VGVEPEG--M---AVSPDGKIVVNTSETTNMAHFIDTKTYEIVD 151 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee---CCCCcce--E---EECCCCCEEEEEecCCCeEEEEeCCCCeEEE
Confidence 78877544 4432 23444555554322 2222 1122332 2 4566999988877764 45666766433
Q ss_pred -cccCCCceEEEECCCCcEEEEee-cCCeEEEEecCCCCccccccCC------CCCCCCceeeecC----------ceEE
Q 003205 213 -KVDDTLSQKMAVSPNGNFVACFT-HDGRLVVNNTNFSSPVIDESCE------SALPPEQIAWCGM----------DSVL 274 (839)
Q Consensus 213 -~~~~~~i~~ia~Spng~~iA~~~-~~g~i~i~ssd~~~~l~e~~~~------~~~~p~~~~WcG~----------d~vv 274 (839)
.........++|||+|+.++..+ .+|++.+|+..-.+.+.+++.. ....|..+.|+.+ +..+
T Consensus 152 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 152 NVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred EEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeE
Confidence 11223457899999999886554 5889999987655544433321 0112344555422 2223
Q ss_pred EEecC----EEE--EEcCCCCceEeccCCCeEEee-cCCc-eEEEccCcceeeeccch
Q 003205 275 LYWND----MLV--MVAPQAEPVQYFYDEPLVLIP-ECDG-VRILSNSSMEFLQRVPA 324 (839)
Q Consensus 275 ~~~~~----~l~--lig~~~~~v~f~~~~~~~l~~-E~DG-vRIit~~~~~~l~~Vp~ 324 (839)
..|+- .+. ..|.....+.|.+++..++++ +.+| |+||..+..+.+.+++-
T Consensus 232 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 232 AVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred EEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 34432 122 233334478898888877665 5677 99999999999988863
No 67
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=5.7e-09 Score=119.60 Aligned_cols=201 Identities=11% Similarity=0.043 Sum_probs=155.7
Q ss_pred CCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC-CceeEEEecCCCCCeEEEeecCCCe-EEEEEeCC
Q 003205 31 IDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-VLISETVWKNPGGRLIGMSWSEDQT-LICVVQDG 108 (839)
Q Consensus 31 ~~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G-~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dG 108 (839)
-|-....|+|.|.+-.....+ .|-+|++||+.- +.+.++.+|- +-|..+.|.++-- ++++++|.
T Consensus 50 HdGpVRgv~FH~~qplFVSGG------------DDykIkVWnYk~rrclftL~GHl--DYVRt~~FHheyPWIlSASDDQ 115 (1202)
T KOG0292|consen 50 HDGPVRGVDFHPTQPLFVSGG------------DDYKIKVWNYKTRRCLFTLLGHL--DYVRTVFFHHEYPWILSASDDQ 115 (1202)
T ss_pred cCCccceeeecCCCCeEEecC------------CccEEEEEecccceehhhhcccc--ceeEEeeccCCCceEEEccCCC
Confidence 366777999999876666665 478999999865 5788899998 9999999998877 47999999
Q ss_pred eEEEEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCceEEEcCCCC-------------C
Q 003205 109 TVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMKVCELARPE-------------V 173 (839)
Q Consensus 109 tv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~-------------~ 173 (839)
|||+||+ .++..-...|| ..-|..++|.|+--.+++++-+ -+.||++.+-+....+..+ +
T Consensus 116 TIrIWNwqsr~~iavltGH-----nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dL 190 (1202)
T KOG0292|consen 116 TIRIWNWQSRKCIAVLTGH-----NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDL 190 (1202)
T ss_pred eEEEEeccCCceEEEEecC-----ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhh
Confidence 9999996 56778888999 7889999999976677777654 4677877654332222110 0
Q ss_pred -------------CCC-CceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-------cccCCCceEEEECCCCcEEE
Q 003205 174 -------------EEL-PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-------KVDDTLSQKMAVSPNGNFVA 232 (839)
Q Consensus 174 -------------~~~-~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-------~~~~~~i~~ia~Spng~~iA 232 (839)
+++ .-.|+...| +-..+|..+.|..|++|..+... ++|.++|+++-|.|+..+|.
T Consensus 191 fg~~DaVVK~VLEGHDRGVNwaAfhp----TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIl 266 (1202)
T KOG0292|consen 191 FGQTDAVVKHVLEGHDRGVNWAAFHP----TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLIL 266 (1202)
T ss_pred cCCcCeeeeeeecccccccceEEecC----CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeE
Confidence 111 223655444 77889999999999999888664 79999999999999999999
Q ss_pred EeecCCeEEEEecCCCCccccc
Q 003205 233 CFTHDGRLVVNNTNFSSPVIDE 254 (839)
Q Consensus 233 ~~~~~g~i~i~ssd~~~~l~e~ 254 (839)
+.++|++|.||+-+-.+.+..|
T Consensus 267 SnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 267 SNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred ecCCCccEEEEecccccceeee
Confidence 9999999999987655555444
No 68
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.14 E-value=4.8e-09 Score=110.54 Aligned_cols=239 Identities=14% Similarity=0.164 Sum_probs=164.9
Q ss_pred cCCceEEEEcCCCCceeEEEecCCCCCeEEEeec-CCCe---EEEEEeCCeEEEEeC-CCCc----cccCCCCCcccccc
Q 003205 63 SALRKLRIFNSAGVLISETVWKNPGGRLIGMSWS-EDQT---LICVVQDGTVYRYNI-HAEL----IEPNASMGKECFEE 133 (839)
Q Consensus 63 ~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs-~de~---Lv~v~~dGtv~l~~~-~G~~----~~~~~g~~~~~~~~ 133 (839)
++|++++||+..|+.+.++.+|. ++|.++.|- +|.. +++++.|.|+++|-+ .|+. .+...|| ..
T Consensus 122 sYDg~~riWd~~Gk~~~~~~Ght--~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GH-----k~ 194 (423)
T KOG0313|consen 122 SYDGTSRIWDLKGKSIKTIVGHT--GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGH-----KR 194 (423)
T ss_pred ecCCeeEEEecCCceEEEEecCC--cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccc-----cc
Confidence 38999999999999999999999 999988886 3443 799999999999954 2333 3334489 77
Q ss_pred CeEEEEEECCeEEEEecCCe-EEEEecCCC-ce--EEEc-----------CC----CC---C-CCCCceEEEeCCCCCCC
Q 003205 134 NVVECVFWGNGVVCVTEANR-YFCMADFAT-MK--VCEL-----------AR----PE---V-EELPHCVAVIEPKYTMT 190 (839)
Q Consensus 134 ~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~-~~--~~~l-----------~~----~~---~-~~~~~~w~vi~~~~S~~ 190 (839)
.|..+.+.++|..+++++.+ -..+|++.. +. .... ++ .| + ++....-+| .|+ +
T Consensus 195 ~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V---~w~-d 270 (423)
T KOG0313|consen 195 SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSV---VWS-D 270 (423)
T ss_pred ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeE---EEc-C
Confidence 89999999999999999875 345565321 10 0000 00 01 1 111122223 233 3
Q ss_pred CcEEEEEEeCCeEEEEecCCcc----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCC---ccccccCCCCCCCC
Q 003205 191 GSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSS---PVIDESCESALPPE 263 (839)
Q Consensus 191 ~~~~v~~s~d~tv~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~---~l~e~~~~~~~~p~ 263 (839)
..++..++-|+||+.||..... .....++..|+.+|..++||+++.|..|.+|+..-++ +-..|-.| +....
T Consensus 271 ~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH-~nwVs 349 (423)
T KOG0313|consen 271 ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH-KNWVS 349 (423)
T ss_pred CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecc-hhhhh
Confidence 6778888889999999977332 4567789999999999999999999999999854221 12234445 34667
Q ss_pred ceeee----------cCceEEEEecC-----EE-EEEcCCCC--ceEeccCCCeEEeecCCc-eEEEccC
Q 003205 264 QIAWC----------GMDSVLLYWND-----ML-VMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSNS 314 (839)
Q Consensus 264 ~~~Wc----------G~d~vv~~~~~-----~l-~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit~~ 314 (839)
.+.|| .-|.++..|+- .+ .+-|+... .+.|+ ++..++.+..|. +||+...
T Consensus 350 svkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 350 SVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred heecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 78887 46778888863 33 34455443 44443 455778888997 9988765
No 69
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.13 E-value=3.4e-09 Score=124.77 Aligned_cols=243 Identities=16% Similarity=0.234 Sum_probs=164.1
Q ss_pred cCC-CCCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCC-------------ceeEEEecCCCCCeEE
Q 003205 27 RWK-HIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV-------------LISETVWKNPGGRLIG 92 (839)
Q Consensus 27 ~w~-~~~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~-------------ll~ti~~~~~~~~I~~ 92 (839)
.|- ..+.+.+.|+++|+|-.+|+.++ ..|+.+.||+..-- ++.+..-|. +.|.+
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq----------~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~--~sv~C 74 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFATGGQ----------VLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHD--GSVNC 74 (942)
T ss_pred cccccCCeeEEEEEecCCceeEecCCc----------cccccceeeccccccchhhhhhcccchhheeecccc--CceeE
Confidence 463 33667889999999999998863 35788889986532 345555566 89999
Q ss_pred EeecCCCe-EEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCceEEEcCCC
Q 003205 93 MSWSEDQT-LICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARP 171 (839)
Q Consensus 93 ~~fs~de~-Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~~~~l~~~ 171 (839)
+.|||||+ |+++++|+.|-+|...+ . ..+. .|+.+|-.--..+.+.+. .|.
T Consensus 75 VR~S~dG~~lAsGSDD~~v~iW~~~~-~---~~~~------------~fgs~g~~~~vE~wk~~~----------~l~-- 126 (942)
T KOG0973|consen 75 VRFSPDGSYLASGSDDRLVMIWERAE-I---GSGT------------VFGSTGGAKNVESWKVVS----------ILR-- 126 (942)
T ss_pred EEECCCCCeEeeccCcceEEEeeecc-c---CCcc------------cccccccccccceeeEEE----------EEe--
Confidence 99999998 68999999999997653 1 1100 122222222222222111 111
Q ss_pred CCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEe-c
Q 003205 172 EVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN-T 245 (839)
Q Consensus 172 ~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~s-s 245 (839)
+ |.-.|....+||++..+|+.+.|++|.+|+...-. .+|.+.|..+++-|-|+++|+-++|++|+||. +
T Consensus 127 ---~--H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~ 201 (942)
T KOG0973|consen 127 ---G--HDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTS 201 (942)
T ss_pred ---c--CCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcc
Confidence 0 11234444677899999999999999999987443 78999999999999999999999999999998 4
Q ss_pred CCCC--ccccccCCC--CCCCCceeee--c------------CceEEEE----ecCEEEEEcCCCC--ceEeccC-----
Q 003205 246 NFSS--PVIDESCES--ALPPEQIAWC--G------------MDSVLLY----WNDMLVMVAPQAE--PVQYFYD----- 296 (839)
Q Consensus 246 d~~~--~l~e~~~~~--~~~p~~~~Wc--G------------~d~vv~~----~~~~l~lig~~~~--~v~f~~~----- 296 (839)
||+- .+.+.-.+. ..-..-+.|. | -.++.+. |.....|+||.+- -++|.+-
T Consensus 202 dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~ 281 (942)
T KOG0973|consen 202 DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERN 281 (942)
T ss_pred cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccc
Confidence 4332 222211111 1123467786 2 2223222 6668999999985 6788651
Q ss_pred CC------------eEEeecCCc-eEEEccC
Q 003205 297 EP------------LVLIPECDG-VRILSNS 314 (839)
Q Consensus 297 ~~------------~~l~~E~DG-vRIit~~ 314 (839)
.. ++.++.-|+ +-||++-
T Consensus 282 ~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~ 312 (942)
T KOG0973|consen 282 NKNGTSTQPNCYYCIAAVGSQDRSLSVWNTA 312 (942)
T ss_pred cccCCccCCCcceEEEEEecCCccEEEEecC
Confidence 11 567889998 9999986
No 70
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.12 E-value=9.9e-10 Score=116.67 Aligned_cols=187 Identities=11% Similarity=0.136 Sum_probs=124.0
Q ss_pred cCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeCCCCc-cccCCCCCccccccCeEEEE
Q 003205 63 SALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAEL-IEPNASMGKECFEENVVECV 139 (839)
Q Consensus 63 ~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~G~~-~~~~~g~~~~~~~~~V~~~~ 139 (839)
+.++..++|| .++++..|+.+|+ ++|.++.|...+. .|+++.|.|+++|+++-.. .++.++-+ .+.++.
T Consensus 238 s~d~~~r~Wnvd~~r~~~TLsGHt--dkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S------~cnDI~ 309 (459)
T KOG0288|consen 238 SNDKNLRLWNVDSLRLRHTLSGHT--DKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS------QCNDIV 309 (459)
T ss_pred cCCCceeeeeccchhhhhhhcccc--cceeeehhhccccceeeccccchhhhhhhhhhheeccccccc------cccceE
Confidence 3689999999 6889999999999 9999999998776 7899999999999986544 44333221 122222
Q ss_pred EECCeEEEEec--CCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----
Q 003205 140 FWGNGVVCVTE--ANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----- 212 (839)
Q Consensus 140 ~~~~G~v~~t~--~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----- 212 (839)
.. +..++++ +.+ ...|++.++.... +.++++..++.. .|++|.-+...+.|+++.++|..+..
T Consensus 310 ~~--~~~~~SgH~Dkk-vRfwD~Rs~~~~~--sv~~gg~vtSl~-----ls~~g~~lLsssRDdtl~viDlRt~eI~~~~ 379 (459)
T KOG0288|consen 310 CS--ISDVISGHFDKK-VRFWDIRSADKTR--SVPLGGRVTSLD-----LSMDGLELLSSSRDDTLKVIDLRTKEIRQTF 379 (459)
T ss_pred ec--ceeeeecccccc-eEEEeccCCceee--EeecCcceeeEe-----eccCCeEEeeecCCCceeeeecccccEEEEe
Confidence 22 3334443 222 3445544443322 222333344333 34478777777889999999988764
Q ss_pred ----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCC---CCCceeeec
Q 003205 213 ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESAL---PPEQIAWCG 269 (839)
Q Consensus 213 ----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~---~p~~~~WcG 269 (839)
.-....|+++.|||+|.++|.++.||.++||+.+ +.++ |+....+. ....++||+
T Consensus 380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~-tgKl-E~~l~~s~s~~aI~s~~W~~ 441 (459)
T KOG0288|consen 380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVF-TGKL-EKVLSLSTSNAAITSLSWNP 441 (459)
T ss_pred eccccccccccceeEECCCCceeeeccCCCcEEEEEcc-CceE-EEEeccCCCCcceEEEEEcC
Confidence 0112339999999999999999999999999876 4443 34332111 245666664
No 71
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.11 E-value=9.4e-10 Score=109.85 Aligned_cols=225 Identities=12% Similarity=0.083 Sum_probs=157.3
Q ss_pred CCCceeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeEEEEe-CCCCccccCCCCCccccccCeEEEEEECCeEEEEecC
Q 003205 74 AGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYN-IHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEA 151 (839)
Q Consensus 74 ~G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv~l~~-~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~ 151 (839)
.|-.|+|+.+|. |.|++-....|-.. ++++.|=|-++|| +.|..+. ++.| ..-|..|.|+.+---++|+.
T Consensus 48 tgdwigtfeghk--gavw~~~l~~na~~aasaaadftakvw~a~tgdelh-sf~h-----khivk~~af~~ds~~lltgg 119 (334)
T KOG0278|consen 48 TGDWIGTFEGHK--GAVWSATLNKNATRAASAAADFTAKVWDAVTGDELH-SFEH-----KHIVKAVAFSQDSNYLLTGG 119 (334)
T ss_pred CCCcEEeeeccC--cceeeeecCchhhhhhhhcccchhhhhhhhhhhhhh-hhhh-----hheeeeEEecccchhhhccc
Confidence 688999999999 99998888877776 6999999999997 7787643 2333 33577899999999999987
Q ss_pred Ce-EEEEecCCCce--EEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----cccCCCceEEEE
Q 003205 152 NR-YFCMADFATMK--VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAV 224 (839)
Q Consensus 152 ~~-~~~v~~~~~~~--~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----~~~~~~i~~ia~ 224 (839)
+. +..|-+.+.|. +..+...+-+-..-.|+- ..+.++..+.|+||.+||...-. .....|+.++-+
T Consensus 120 ~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-------eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEv 192 (334)
T KOG0278|consen 120 QEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-------EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEV 192 (334)
T ss_pred hHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-------cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceee
Confidence 63 44454444332 222221110001123543 55677777889999999977433 345788999999
Q ss_pred CCCCcEEEEeecCCeEEEEecCCCCccccccC-----CCCCCCC-ceeee-cCceEEEEec----CEEE--EEcCCCC--
Q 003205 225 SPNGNFVACFTHDGRLVVNNTNFSSPVIDESC-----ESALPPE-QIAWC-GMDSVLLYWN----DMLV--MVAPQAE-- 289 (839)
Q Consensus 225 Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~-----~~~~~p~-~~~Wc-G~d~vv~~~~----~~l~--lig~~~~-- 289 (839)
|++|++|-+.- -+.|..|+.+--..+.+++. ..+..|. .+-=| |+|.-+..|+ .++- ..|+.|.
T Consensus 193 s~dG~ilTia~-gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVh 271 (334)
T KOG0278|consen 193 SQDGRILTIAY-GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVH 271 (334)
T ss_pred ccCCCEEEEec-CceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceE
Confidence 99998877753 45788998775555555542 1233454 44446 5666666554 2443 3677776
Q ss_pred ceEeccCCCeEEeecCCc-eEEEccC
Q 003205 290 PVQYFYDEPLVLIPECDG-VRILSNS 314 (839)
Q Consensus 290 ~v~f~~~~~~~l~~E~DG-vRIit~~ 314 (839)
.|+|++|+..+.+...|| ||||-.+
T Consensus 272 cVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 272 CVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred EEEECCCCceeeccCCCceEEEEEec
Confidence 899999999999999999 9999776
No 72
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.11 E-value=1.1e-09 Score=118.51 Aligned_cols=236 Identities=14% Similarity=0.206 Sum_probs=170.1
Q ss_pred ceeEEEecCCCCCeEEEeecC-CCeE-EEEEeCCeEEEEeC--CCCccccCCCCCccccccCeEEEEEECCeEEEEecCC
Q 003205 77 LISETVWKNPGGRLIGMSWSE-DQTL-ICVVQDGTVYRYNI--HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN 152 (839)
Q Consensus 77 ll~ti~~~~~~~~I~~~~fs~-de~L-v~v~~dGtv~l~~~--~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~ 152 (839)
++-++.+|. ..|-++.|.| .++| ++.+-||.|+||++ .|+.+++.+|| ...|.+++++..|.-+++.+.
T Consensus 206 ~~~~~~gH~--kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH-----~k~Vrd~~~s~~g~~fLS~sf 278 (503)
T KOG0282|consen 206 LSHNLSGHT--KGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH-----RKPVRDASFNNCGTSFLSASF 278 (503)
T ss_pred heeeccCCc--cccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcc-----hhhhhhhhccccCCeeeeeec
Confidence 444555666 7899999999 8887 69999999999984 47889999999 778999999999999999998
Q ss_pred e-EEEEecCCCce-EEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe-CCeEEEEecCCcc-----cccCCCceEEEE
Q 003205 153 R-YFCMADFATMK-VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDEDGVQ-----KVDDTLSQKMAV 224 (839)
Q Consensus 153 ~-~~~v~~~~~~~-~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~-d~tv~l~~~~~~~-----~~~~~~i~~ia~ 224 (839)
+ +..+|+.+..+ ..++. ++..|.| | .|-||++-+++++. |+.|.+||..... .-|-++|..|.|
T Consensus 279 D~~lKlwDtETG~~~~~f~---~~~~~~c--v---kf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F 350 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRFH---LDKVPTC--V---KFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITF 350 (503)
T ss_pred ceeeeeeccccceEEEEEe---cCCCcee--e---ecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEE
Confidence 7 46788888544 33333 2234554 3 45568866666665 9999999988654 567899999999
Q ss_pred CCCCcEEEEeecCCeEEEEecCCCCcc---ccccCCC----CCCCCceeee---cCceEEEEe-------cCEEEEEcC-
Q 003205 225 SPNGNFVACFTHDGRLVVNNTNFSSPV---IDESCES----ALPPEQIAWC---GMDSVLLYW-------NDMLVMVAP- 286 (839)
Q Consensus 225 Spng~~iA~~~~~g~i~i~ssd~~~~l---~e~~~~~----~~~p~~~~Wc---G~d~vv~~~-------~~~l~lig~- 286 (839)
=|+|+..++.++++++.||.-+-.-.+ .+...++ ...|.+=..| -++.+++.- +..=.+-|+
T Consensus 351 ~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~ 430 (503)
T KOG0282|consen 351 VDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS 430 (503)
T ss_pred ccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee
Confidence 999999999999999999975422111 1111111 1123222222 233444421 111233343
Q ss_pred ---CCCceEeccCCCeEEeecCCc-eEEEccCcceeeeccchhhH
Q 003205 287 ---QAEPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTE 327 (839)
Q Consensus 287 ---~~~~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~~~ 327 (839)
++-.+.|++|+..++++.-|| +-+|+-+.+.++.+.+.+.+
T Consensus 431 vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~ 475 (503)
T KOG0282|consen 431 VAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ 475 (503)
T ss_pred ccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc
Confidence 334799999999999999999 99999999999999988743
No 73
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=3.3e-09 Score=122.53 Aligned_cols=195 Identities=13% Similarity=0.102 Sum_probs=140.5
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeE
Q 003205 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTV 110 (839)
Q Consensus 33 l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv 110 (839)
......+++-+++..++.. .+++|+.|+ .+|+.-..|.=.. -++.++.|+.+|.. +.+++|-.|
T Consensus 55 ~g~~v~~ia~~s~~f~~~s------------~~~tv~~y~fps~~~~~iL~Rft--lp~r~~~v~g~g~~iaagsdD~~v 120 (933)
T KOG1274|consen 55 SGELVSSIACYSNHFLTGS------------EQNTVLRYKFPSGEEDTILARFT--LPIRDLAVSGSGKMIAAGSDDTAV 120 (933)
T ss_pred cCceeEEEeecccceEEee------------ccceEEEeeCCCCCccceeeeee--ccceEEEEecCCcEEEeecCceeE
Confidence 4555666777777666654 689999999 5665443333333 57789999999985 688888889
Q ss_pred EEEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCce-EEEcCCCCCC-CCCceEEEeCCC
Q 003205 111 YRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMK-VCELARPEVE-ELPHCVAVIEPK 186 (839)
Q Consensus 111 ~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~-~~~l~~~~~~-~~~~~w~vi~~~ 186 (839)
++-++ ++.......|| ...|..+.+.|+|..++..+.+ ...+|++++.. ...+....-. .....-.+..+.
T Consensus 121 K~~~~~D~s~~~~lrgh-----~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~a 195 (933)
T KOG1274|consen 121 KLLNLDDSSQEKVLRGH-----DAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLA 195 (933)
T ss_pred EEEeccccchheeeccc-----CCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeee
Confidence 99974 56667778889 7789999999988877776433 33456565332 2222221111 122122345668
Q ss_pred CCCCCcEEEEEEeCCeEEEEecCCcc-------cccCCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 187 YTMTGSVEVLIGTDAGILMLDEDGVQ-------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 187 ~S~~~~~~v~~s~d~tv~l~~~~~~~-------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
++|+|...+..+.|++|++++..|-. ..+...+..+++||||++||..+-+|.|-||+.+
T Consensus 196 W~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 196 WHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred ecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 99999999999999999999988653 2233349999999999999999999999999988
No 74
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=1.8e-09 Score=111.11 Aligned_cols=211 Identities=16% Similarity=0.168 Sum_probs=127.0
Q ss_pred ceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeCCC---CccccCCCCCccccccCeEEEEEEC--CeEEEEec
Q 003205 77 LISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHA---ELIEPNASMGKECFEENVVECVFWG--NGVVCVTE 150 (839)
Q Consensus 77 ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~G---~~~~~~~g~~~~~~~~~V~~~~~~~--~G~v~~t~ 150 (839)
.++++++|. +.|.+|+||.||+ |++++.||+||+|++.- +-.+ .+...+| -+.-.-++|.| ..+++...
T Consensus 78 ~~~~LKgH~--~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr-~~R~nve--~dhpT~V~FapDc~s~vv~~~ 152 (420)
T KOG2096|consen 78 NVSVLKGHK--KEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHR-CIRQNVE--YDHPTRVVFAPDCKSVVVSVK 152 (420)
T ss_pred hhhhhhccC--CceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhh-Hhhcccc--CCCceEEEECCCcceEEEEEc
Confidence 356788998 9999999999997 89999999999997531 1111 1111111 11223467777 34444445
Q ss_pred CCeEEEEecC---CCceEEEcCCCCCC----CCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----cccCCCc
Q 003205 151 ANRYFCMADF---ATMKVCELARPEVE----ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLS 219 (839)
Q Consensus 151 ~~~~~~v~~~---~~~~~~~l~~~~~~----~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----~~~~~~i 219 (839)
+++-.+|... .+.. -.++....+ ...+.-.+++...-.++.++..++.|.+|.+|+..|+. ...+..-
T Consensus 153 ~g~~l~vyk~~K~~dG~-~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n 231 (420)
T KOG2096|consen 153 RGNKLCVYKLVKKTDGS-GSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSN 231 (420)
T ss_pred cCCEEEEEEeeecccCC-CCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccc
Confidence 5543222221 1110 011111111 11122223332223356788888889999999999876 2234445
Q ss_pred eEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCC--ceEeccCC
Q 003205 220 QKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAE--PVQYFYDE 297 (839)
Q Consensus 220 ~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~--~v~f~~~~ 297 (839)
..-++||||+|||..+-+--++||..=|++.= +| +...+- ..|-|+... +.-|+.++
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG-~f----qev~rv----------------f~LkGH~saV~~~aFsn~S 290 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG-TF----QEVKRV----------------FSLKGHQSAVLAAAFSNSS 290 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEEEeccCc-ch----hhhhhh----------------heeccchhheeeeeeCCCc
Confidence 67899999999999776666777754333221 11 111111 234455543 67777788
Q ss_pred CeEEeecCCc-eEEEccC
Q 003205 298 PLVLIPECDG-VRILSNS 314 (839)
Q Consensus 298 ~~~l~~E~DG-vRIit~~ 314 (839)
...+...-|| .|||..+
T Consensus 291 ~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 291 TRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred ceeEEEecCCcEEEeecc
Confidence 8889999999 9999998
No 75
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.09 E-value=1.2e-09 Score=112.28 Aligned_cols=188 Identities=16% Similarity=0.201 Sum_probs=140.2
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYR 112 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l 112 (839)
...+.||.++..|-.++ .|.+++|-. -+|+.+..+++|+ +-|...-||+||+ ++++++||||++
T Consensus 309 vt~l~FSrD~SqiLS~s------------fD~tvRiHGlKSGK~LKEfrGHs--Syvn~a~ft~dG~~iisaSsDgtvkv 374 (508)
T KOG0275|consen 309 VTCLSFSRDNSQILSAS------------FDQTVRIHGLKSGKCLKEFRGHS--SYVNEATFTDDGHHIISASSDGTVKV 374 (508)
T ss_pred eeEEEEccCcchhhccc------------ccceEEEeccccchhHHHhcCcc--ccccceEEcCCCCeEEEecCCccEEE
Confidence 34666777766666554 689999998 5999999999999 9999999999997 689999999999
Q ss_pred EeC-CCCccccCCCCCccccccCeEEEEEEC---CeEEEEecCCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCC
Q 003205 113 YNI-HAELIEPNASMGKECFEENVVECVFWG---NGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYT 188 (839)
Q Consensus 113 ~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~---~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S 188 (839)
|+. .++...++.+... +..|..+-+.| .-+++...++.+|.++ +.+.-.+.+.+..-.+..-.-++++
T Consensus 375 W~~KtteC~~Tfk~~~~---d~~vnsv~~~PKnpeh~iVCNrsntv~imn-~qGQvVrsfsSGkREgGdFi~~~lS---- 446 (508)
T KOG0275|consen 375 WHGKTTECLSTFKPLGT---DYPVNSVILLPKNPEHFIVCNRSNTVYIMN-MQGQVVRSFSSGKREGGDFINAILS---- 446 (508)
T ss_pred ecCcchhhhhhccCCCC---cccceeEEEcCCCCceEEEEcCCCeEEEEe-ccceEEeeeccCCccCCceEEEEec----
Confidence 974 5666544433221 55677777755 6677777777777655 5566666676522111111123344
Q ss_pred CCCcEEEEEEeCCeEEEEecC-Ccc----cccCCCceEEEECCCCcEEEEeecCCeEEEEe
Q 003205 189 MTGSVEVLIGTDAGILMLDED-GVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (839)
Q Consensus 189 ~~~~~~v~~s~d~tv~l~~~~-~~~----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~s 244 (839)
|.|..+--++.|+.+|+++.. |.. ..|..-+..++-.|..+.||++++||.+++|.
T Consensus 447 pkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 447 PKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 499999999999999999865 433 56777788999999999999999999999995
No 76
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.09 E-value=2.2e-09 Score=120.55 Aligned_cols=250 Identities=12% Similarity=0.112 Sum_probs=165.5
Q ss_pred eeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCCCCc-cc--cCCCCCccccccCeEE-EEE--ECCeEEEEecC
Q 003205 78 ISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAEL-IE--PNASMGKECFEENVVE-CVF--WGNGVVCVTEA 151 (839)
Q Consensus 78 l~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~-~~--~~~g~~~~~~~~~V~~-~~~--~~~G~v~~t~~ 151 (839)
-..+.+|. ..|..+.+++++.++.++.|||+++|...|+. +. +..++ ..-|.. +.+ ++.|..+.-+.
T Consensus 7 s~~l~gH~--~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~-----~g~i~~~i~y~e~~~~~l~~g~~ 79 (745)
T KOG0301|consen 7 SHELEGHK--SDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGP-----KGFIANSICYAESDKGRLVVGGM 79 (745)
T ss_pred EEEeccCc--cchheeEecCCeEEeecCCCCceeeeeccCcccccceecccC-----cceeeccceeccccCcceEeecc
Confidence 34577787 88999999999989999999999999876664 32 33433 122221 222 33453333333
Q ss_pred CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc---cccCCCceEEEECCCC
Q 003205 152 NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---KVDDTLSQKMAVSPNG 228 (839)
Q Consensus 152 ~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~---~~~~~~i~~ia~Spng 228 (839)
-....+++..++.+ +.. +.+....-|.++.. ...+++..|.|.|+++|....+. .+|+.+|+++++=|.+
T Consensus 80 D~~i~v~~~~~~~P--~~~--LkgH~snVC~ls~~---~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~ 152 (745)
T KOG0301|consen 80 DTTIIVFKLSQAEP--LYT--LKGHKSNVCSLSIG---EDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN 152 (745)
T ss_pred cceEEEEecCCCCc--hhh--hhccccceeeeecC---CcCceEecccccceEEecchhhhcccCCcchheeeeeecCCC
Confidence 33444555543322 111 11222222333321 22347888889999999988775 7899999999999998
Q ss_pred cEEEEeecCCeEEEEecCCCCccccccCCCCC------CCC-ceeeecCceEEEEecC----EEEEEcCCCC--ceEecc
Q 003205 229 NFVACFTHDGRLVVNNTNFSSPVIDESCESAL------PPE-QIAWCGMDSVLLYWND----MLVMVAPQAE--PVQYFY 295 (839)
Q Consensus 229 ~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~------~p~-~~~WcG~d~vv~~~~~----~l~lig~~~~--~v~f~~ 295 (839)
.+.+++.|.+|++|.. ++.+..|..|.+. -|. .+.=||||+++..|+- .+.+.||.+- ++++..
T Consensus 153 -~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~ 229 (745)
T KOG0301|consen 153 -TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMAL 229 (745)
T ss_pred -cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecC
Confidence 8888999999999976 5666667666421 122 5666999999999974 5678888775 566566
Q ss_pred CCCeEEeecCCc-eEEEccCcceeeeccchhhHhhhccCCCChhhhHHHHHH
Q 003205 296 DEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALD 346 (839)
Q Consensus 296 ~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~~~~vf~igS~~pga~L~~A~~ 346 (839)
++..+++...|| +|||..+ +..|.+.-++.+|+....-..|.+..-++|
T Consensus 230 ~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SD 279 (745)
T KOG0301|consen 230 SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSD 279 (745)
T ss_pred CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccC
Confidence 788899999998 9999999 555555555556665555555544444444
No 77
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.07 E-value=1.3e-09 Score=115.52 Aligned_cols=213 Identities=11% Similarity=0.072 Sum_probs=159.1
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCC-eEEEEEeCCeE
Q 003205 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQ-TLICVVQDGTV 110 (839)
Q Consensus 32 ~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de-~Lv~v~~dGtv 110 (839)
|.....+..|++|..+.... .++.|++|.++=+-+..+..|. ...|.+++|||++ ++++.++||++
T Consensus 138 Ds~Vr~m~ws~~g~wmiSgD------------~gG~iKyWqpnmnnVk~~~ahh-~eaIRdlafSpnDskF~t~SdDg~i 204 (464)
T KOG0284|consen 138 DSPVRTMKWSHNGTWMISGD------------KGGMIKYWQPNMNNVKIIQAHH-AEAIRDLAFSPNDSKFLTCSDDGTI 204 (464)
T ss_pred cccceeEEEccCCCEEEEcC------------CCceEEecccchhhhHHhhHhh-hhhhheeccCCCCceeEEecCCCeE
Confidence 44556778888888876654 5899999999999999988876 2689999999965 58999999999
Q ss_pred EEEeC-CCCccccCCCCCccccccCeEEEEEEC-CeEEEEecCCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCC
Q 003205 111 YRYNI-HAELIEPNASMGKECFEENVVECVFWG-NGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYT 188 (839)
Q Consensus 111 ~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S 188 (839)
+|||. .++......|| ...|.++...| -|+++.-+..+.+.+|+=.+ ...|++ + ..|.=+|....|+
T Consensus 205 kiWdf~~~kee~vL~GH-----gwdVksvdWHP~kgLiasgskDnlVKlWDprS--g~cl~t--l--h~HKntVl~~~f~ 273 (464)
T KOG0284|consen 205 KIWDFRMPKEERVLRGH-----GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS--GSCLAT--L--HGHKNTVLAVKFN 273 (464)
T ss_pred EEEeccCCchhheeccC-----CCCcceeccCCccceeEEccCCceeEeecCCC--cchhhh--h--hhccceEEEEEEc
Confidence 99984 56665667888 55678777777 66555555555777887332 223433 1 2233346666888
Q ss_pred CCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCC-cEEEEeecCCeEEEEecCCCCccccccCCCCCCC
Q 003205 189 MTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNG-NFVACFTHDGRLVVNNTNFSSPVIDESCESALPP 262 (839)
Q Consensus 189 ~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng-~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p 262 (839)
++++.+++++.|..+.++|..... ++|..-+..++.+|=. .++++++.||.+..|.-+....+.+..-......
T Consensus 274 ~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~i 353 (464)
T KOG0284|consen 274 PNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEI 353 (464)
T ss_pred CCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccce
Confidence 999999999999999999988433 6788899999999965 4788889999999998886666655543334456
Q ss_pred Cceeee
Q 003205 263 EQIAWC 268 (839)
Q Consensus 263 ~~~~Wc 268 (839)
.+|+|-
T Consensus 354 wsl~~h 359 (464)
T KOG0284|consen 354 WSLAYH 359 (464)
T ss_pred eeeecc
Confidence 677764
No 78
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=1.6e-09 Score=116.63 Aligned_cols=186 Identities=15% Similarity=0.187 Sum_probs=135.7
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYR 112 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l 112 (839)
.-...+||+|..||+.+ ..+.|++-. .+|++|.+++-+ |.|.++.||.|++ |+++..+|.|.+
T Consensus 306 ~e~FeVShd~~fia~~G------------~~G~I~lLhakT~eli~s~Kie---G~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 306 MERFEVSHDSNFIAIAG------------NNGHIHLLHAKTKELITSFKIE---GVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred hheeEecCCCCeEEEcc------------cCceEEeehhhhhhhhheeeec---cEEeeEEEecCCcEEEEEcCCceEEE
Confidence 34788999999999997 468899988 488999999874 8999999999987 678889999999
Q ss_pred EeCCCCc-cccCCCCCccccccCeEEE--EEECCeEEEEecCCe-EEEEecCC----CceEEEcCCCCCCCCCceEEEeC
Q 003205 113 YNIHAEL-IEPNASMGKECFEENVVEC--VFWGNGVVCVTEANR-YFCMADFA----TMKVCELARPEVEELPHCVAVIE 184 (839)
Q Consensus 113 ~~~~G~~-~~~~~g~~~~~~~~~V~~~--~~~~~G~v~~t~~~~-~~~v~~~~----~~~~~~l~~~~~~~~~~~w~vi~ 184 (839)
||+.-.. ..... . +..|..- +++.+|-.++|++.. |+-+.+.+ +..++++.. +.+ -.-+|-+
T Consensus 371 ~nl~~~~~~~rf~-D-----~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~--~dN--Ltt~Its 440 (514)
T KOG2055|consen 371 WNLRQNSCLHRFV-D-----DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKT--VDN--LTTAITS 440 (514)
T ss_pred EecCCcceEEEEe-e-----cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhh--hhh--hheeeee
Confidence 9986543 22222 2 4555544 445799999998763 44443322 222333322 101 1122344
Q ss_pred CCCCCCCcEEEEEEe--CCeEEEEecCCcc-----c---ccCCCceEEEECCCCcEEEEeecCCeEEEEec
Q 003205 185 PKYTMTGSVEVLIGT--DAGILMLDEDGVQ-----K---VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNT 245 (839)
Q Consensus 185 ~~~S~~~~~~v~~s~--d~tv~l~~~~~~~-----~---~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ss 245 (839)
-+|++|++.++++|. .+.+.|...-++. + ...+.++.|+|||+|-++|.++..|.+.+|..
T Consensus 441 l~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 441 LQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred eeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 478889999999986 7788998888775 2 33466899999999999999999999999863
No 79
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.07 E-value=2.4e-09 Score=116.36 Aligned_cols=215 Identities=13% Similarity=0.186 Sum_probs=138.2
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEE-Ee------------cCCCCCeEEEeecCC--
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISET-VW------------KNPGGRLIGMSWSED-- 98 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti-~~------------~~~~~~I~~~~fs~d-- 98 (839)
....+++||.|+.|.++. ..-.++||+.+|..+..+ ++ |. ..+.+-+|.|+
T Consensus 216 ~i~sl~ys~Tg~~iLvvs------------g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHi--a~lt~g~whP~~k 281 (641)
T KOG0772|consen 216 QINSLQYSVTGDQILVVS------------GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHI--AELTCGCWHPDNK 281 (641)
T ss_pred ccceeeecCCCCeEEEEe------------cCcceeEEccCCceeeeeeccchhhhhhhccCCce--eeeeccccccCcc
Confidence 345889999999999987 457799999999987763 33 33 46788899996
Q ss_pred CeEEEEEeCCeEEEEeCCCCc--cccCCCCCccccccCeEEEEEECCeEEEEec--CCeE--EEEecCCCceEEEcCCCC
Q 003205 99 QTLICVVQDGTVYRYNIHAEL--IEPNASMGKECFEENVVECVFWGNGVVCVTE--ANRY--FCMADFATMKVCELARPE 172 (839)
Q Consensus 99 e~Lv~v~~dGtv~l~~~~G~~--~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~--~~~~--~~v~~~~~~~~~~l~~~~ 172 (839)
+++++.+.|||+|+|+..-.. .+.............|..|.+.++|..++++ +|.+ |...+........+.+.-
T Consensus 282 ~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH 361 (641)
T KOG0772|consen 282 EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAH 361 (641)
T ss_pred cceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeecc
Confidence 458999999999999764322 1111111111114457789999999998886 4433 332221100011222211
Q ss_pred CC-CCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc--------cccCCCceEEEECCCCcEEEEeec------C
Q 003205 173 VE-ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--------KVDDTLSQKMAVSPNGNFVACFTH------D 237 (839)
Q Consensus 173 ~~-~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~--------~~~~~~i~~ia~Spng~~iA~~~~------~ 237 (839)
.+ ..++| | .||+||+.++.=+.|+++++||+.... ....-+-...+|||+-++|.+++. .
T Consensus 362 ~~g~~Its--i---~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~ 436 (641)
T KOG0772|consen 362 LPGQDITS--I---SFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTA 436 (641)
T ss_pred CCCCceeE--E---EeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCC
Confidence 11 12232 2 688899999999999999999998653 123445678999999999998874 3
Q ss_pred CeEEEEecC-CCCccccccCCCCCCCCceeeecCceEEEEecC
Q 003205 238 GRLVVNNTN-FSSPVIDESCESALPPEQIAWCGMDSVLLYWND 279 (839)
Q Consensus 238 g~i~i~ssd-~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~ 279 (839)
|++.+++.- |..+ ..+...+...|.++|.-
T Consensus 437 g~L~f~d~~t~d~v------------~ki~i~~aSvv~~~Whp 467 (641)
T KOG0772|consen 437 GTLFFFDRMTLDTV------------YKIDISTASVVRCLWHP 467 (641)
T ss_pred ceEEEEeccceeeE------------EEecCCCceEEEEeecc
Confidence 457666533 2222 22223355667788864
No 80
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=3.4e-08 Score=101.73 Aligned_cols=246 Identities=15% Similarity=0.275 Sum_probs=151.3
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc---CCCCceeEEEecCCCCCeEEEeecCCC--e-EEEEEeCCe
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN---SAGVLISETVWKNPGGRLIGMSWSEDQ--T-LICVVQDGT 109 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~---~~G~ll~ti~~~~~~~~I~~~~fs~de--~-Lv~v~~dGt 109 (839)
..|++-+||.-+|+.+ .|.+++||+ .+|+-=-|-.|....|.|+.+.|-+-| + +++++.|+|
T Consensus 17 hdVs~D~~GRRmAtCS------------sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 17 HDVSFDFYGRRMATCS------------SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred eeeeecccCceeeecc------------CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 4688999999999986 799999999 456554444443322899999999865 5 579999999
Q ss_pred EEEEeC-------CCC-c-cccCCCCCccccccCeEEEEEEC--CeEEEEecCC----eEEEEecCCCce-------EEE
Q 003205 110 VYRYNI-------HAE-L-IEPNASMGKECFEENVVECVFWG--NGVVCVTEAN----RYFCMADFATMK-------VCE 167 (839)
Q Consensus 110 v~l~~~-------~G~-~-~~~~~g~~~~~~~~~V~~~~~~~--~G~v~~t~~~----~~~~v~~~~~~~-------~~~ 167 (839)
+++|-= +|. . ..+.+.+. ...|.+++|.| -|+.+++.+. ++|..-+..+-. ...
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~Ds----rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDS----RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN 160 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecC----CcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence 999931 121 1 12233221 56799999988 8888887543 344332221111 111
Q ss_pred cCCCCCCCCCceEEE--eCCCCCCCCcEEEEEEeC-----CeEEEEe--cCCcc-------cccCCCceEEEECCC----
Q 003205 168 LARPEVEELPHCVAV--IEPKYTMTGSVEVLIGTD-----AGILMLD--EDGVQ-------KVDDTLSQKMAVSPN---- 227 (839)
Q Consensus 168 l~~~~~~~~~~~w~v--i~~~~S~~~~~~v~~s~d-----~tv~l~~--~~~~~-------~~~~~~i~~ia~Spn---- 227 (839)
+++++-...-.|-|| .+..+ ....++..+.+ +.+++|. ..+.. ..+..||..|+|+||
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~--~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~ 238 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRM--HEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRS 238 (361)
T ss_pred ccCCcccccCcceEEeeccccc--cCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCc
Confidence 222221111222222 12222 22344544443 2566664 44432 578899999999998
Q ss_pred CcEEEEeecCCeEEEEecCC-CCccccccCCCCCCCCceeeecCceEEEEecCEEE----EEcCCCC--ceEeccCCCeE
Q 003205 228 GNFVACFTHDGRLVVNNTNF-SSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLV----MVAPQAE--PVQYFYDEPLV 300 (839)
Q Consensus 228 g~~iA~~~~~g~i~i~ssd~-~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~----lig~~~~--~v~f~~~~~~~ 300 (839)
+..||.++.|| |.||...- .+.+. .+....|.+|. +-.|. +-+|+++ .++|...|.++
T Consensus 239 y~~lAvA~kDg-v~I~~v~~~~s~i~---~ee~~~~~~~~-----------~l~v~~vs~~~~H~~~VWrv~wNmtGtiL 303 (361)
T KOG2445|consen 239 YHLLAVATKDG-VRIFKVKVARSAIE---EEEVLAPDLMT-----------DLPVEKVSELDDHNGEVWRVRWNMTGTIL 303 (361)
T ss_pred eeeEEEeecCc-EEEEEEeeccchhh---hhcccCCCCcc-----------ccceEEeeeccCCCCceEEEEEeeeeeEE
Confidence 36899999999 88887541 22221 11122344442 12233 3346655 68898889999
Q ss_pred EeecCCc-eEEEccC
Q 003205 301 LIPECDG-VRILSNS 314 (839)
Q Consensus 301 l~~E~DG-vRIit~~ 314 (839)
.++.-|| ||+|-.+
T Consensus 304 sStGdDG~VRLWkan 318 (361)
T KOG2445|consen 304 SSTGDDGCVRLWKAN 318 (361)
T ss_pred eecCCCceeeehhhh
Confidence 9999999 9999876
No 81
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.06 E-value=5.1e-09 Score=116.40 Aligned_cols=198 Identities=18% Similarity=0.304 Sum_probs=135.7
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVY 111 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv~ 111 (839)
..+.+|+.|+|..+.++- +..+-||+ ++|.++.++++|. +.|.+++||.||++ ++++.|..|.
T Consensus 14 ci~d~afkPDGsqL~lAA-------------g~rlliyD~ndG~llqtLKgHK--DtVycVAys~dGkrFASG~aDK~VI 78 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-------------GSRLLVYDTSDGTLLQPLKGHK--DTVYCVAYAKDGKRFASGSADKSVI 78 (1081)
T ss_pred chheeEECCCCceEEEec-------------CCEEEEEeCCCccccccccccc--ceEEEEEEccCCceeccCCCceeEE
Confidence 556899999999988874 57788998 6899999999999 99999999999986 7999999999
Q ss_pred EEeC--CCCccccCCCCCcccc--------------------------------ccCeEEEEEECCeEEEEec--CCeEE
Q 003205 112 RYNI--HAELIEPNASMGKECF--------------------------------EENVVECVFWGNGVVCVTE--ANRYF 155 (839)
Q Consensus 112 l~~~--~G~~~~~~~g~~~~~~--------------------------------~~~V~~~~~~~~G~v~~t~--~~~~~ 155 (839)
+|+. .|. ++++-++...|+ ..+|..|....+|..++.+ +|.+
T Consensus 79 ~W~~klEG~-LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTI- 156 (1081)
T KOG1538|consen 79 IWTSKLEGI-LKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTI- 156 (1081)
T ss_pred Eecccccce-eeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceE-
Confidence 9974 343 344443332221 3334455555689888775 4444
Q ss_pred EEecCC-CceEEEcCCCCCCCCCceEEE-eCCC------------------------------------------CCCCC
Q 003205 156 CMADFA-TMKVCELARPEVEELPHCVAV-IEPK------------------------------------------YTMTG 191 (839)
Q Consensus 156 ~v~~~~-~~~~~~l~~~~~~~~~~~w~v-i~~~------------------------------------------~S~~~ 191 (839)
.+.|-. ++.. .+..|+- .....|.| -+|. |-++|
T Consensus 157 siRNk~gEek~-~I~Rpgg-~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NG 234 (1081)
T KOG1538|consen 157 SIRNKNGEEKV-KIERPGG-SNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNG 234 (1081)
T ss_pred EeecCCCCcce-EEeCCCC-CCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCC
Confidence 344433 3332 2222211 11222433 2221 44566
Q ss_pred cEEEEEEeCCeEEEEecCCcc----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCc
Q 003205 192 SVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSP 250 (839)
Q Consensus 192 ~~~v~~s~d~tv~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~ 250 (839)
..+.+.+.|+.+.++..+|.. .....+|+.+++-||||.++.+..||||--++.-|+.+
T Consensus 235 Ey~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTV 297 (1081)
T KOG1538|consen 235 EYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTV 297 (1081)
T ss_pred cEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHh
Confidence 666777778888888888765 23466799999999999999999999987666544443
No 82
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.05 E-value=4.3e-09 Score=104.44 Aligned_cols=210 Identities=14% Similarity=0.142 Sum_probs=154.7
Q ss_pred ceeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeEEEEe-CCCCccccCCCCCccccccCeEEEEEECCeEEEEecCC-e
Q 003205 77 LISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYN-IHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-R 153 (839)
Q Consensus 77 ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv~l~~-~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~ 153 (839)
.+..+..++ |.|..+.|+-||.. ++..+|.|||+|| +.|.++++.-|| -..|.++..+.+.--+++..+ +
T Consensus 9 r~~~l~~~q--gaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh-----G~EVlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 9 RLSILDCAQ--GAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH-----GHEVLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred hceeecccc--cceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCC-----CceeeeccccccccccccCCCCc
Confidence 456677888 99999999999996 6999999999997 679998888888 556898888665555555544 5
Q ss_pred EEEEecCCCce-EEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-------cccCCCceEEEEC
Q 003205 154 YFCMADFATMK-VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-------KVDDTLSQKMAVS 225 (839)
Q Consensus 154 ~~~v~~~~~~~-~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-------~~~~~~i~~ia~S 225 (839)
+..+|+++..+ .+++.. +.. .|+...|..+..+++..+.|.++.+||-.... ......|.+|.++
T Consensus 82 ~v~vwDV~TGkv~Rr~rg----H~a---qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~ 154 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFRG----HLA---QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA 154 (307)
T ss_pred eEEEEEcccCeeeeeccc----ccc---eeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec
Confidence 78889988544 445432 112 23444566678889999999999999987654 2334567777776
Q ss_pred CCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCCceEeccCCCeEEeecC
Q 003205 226 PNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPEC 305 (839)
Q Consensus 226 png~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~~~l~~E~ 305 (839)
+.-|..++.||++..++.-.++....| +|+.=.+++|+.|+...|.+..
T Consensus 155 --~heIvaGS~DGtvRtydiR~G~l~sDy-----------------------------~g~pit~vs~s~d~nc~La~~l 203 (307)
T KOG0316|consen 155 --EHEIVAGSVDGTVRTYDIRKGTLSSDY-----------------------------FGHPITSVSFSKDGNCSLASSL 203 (307)
T ss_pred --ccEEEeeccCCcEEEEEeecceeehhh-----------------------------cCCcceeEEecCCCCEEEEeec
Confidence 457888899999988865433333222 1233347889999999999999
Q ss_pred Cc-eEEEccCcceeeeccchhhHhhhc
Q 003205 306 DG-VRILSNSSMEFLQRVPASTEQIFA 331 (839)
Q Consensus 306 DG-vRIit~~~~~~l~~Vp~~~~~vf~ 331 (839)
|+ +|++..+.+++|+.-..+...=|+
T Consensus 204 ~stlrLlDk~tGklL~sYkGhkn~eyk 230 (307)
T KOG0316|consen 204 DSTLRLLDKETGKLLKSYKGHKNMEYK 230 (307)
T ss_pred cceeeecccchhHHHHHhcccccceee
Confidence 98 999999999999877666544443
No 83
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.05 E-value=7.9e-09 Score=106.01 Aligned_cols=254 Identities=11% Similarity=0.082 Sum_probs=180.1
Q ss_pred ceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeCCCCccc--cCCCCCccccccCeEEEEEECCeEEEEecCC-
Q 003205 77 LISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAELIE--PNASMGKECFEENVVECVFWGNGVVCVTEAN- 152 (839)
Q Consensus 77 ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~G~~~~--~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~- 152 (839)
++..+++|. |.|..+.|+|+|. ++++..|..|.+|+..|.... ..-|| ...|.++.+..+|-++++.+-
T Consensus 39 p~m~l~gh~--geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgH-----sgAVM~l~~~~d~s~i~S~gtD 111 (338)
T KOG0265|consen 39 PIMLLPGHK--GEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGH-----SGAVMELHGMRDGSHILSCGTD 111 (338)
T ss_pred hhhhcCCCc--ceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccc-----cceeEeeeeccCCCEEEEecCC
Confidence 455677888 9999999999987 689999999999998887633 35578 678999999999988888643
Q ss_pred eEEEEecCCC-ceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----cccCCCceEEEECCC
Q 003205 153 RYFCMADFAT-MKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPN 227 (839)
Q Consensus 153 ~~~~v~~~~~-~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----~~~~~~i~~ia~Spn 227 (839)
+-+..|+.+. ...+++. ....|..+++|. --.-+++...+.|+|+++||..... ....-+++++.|.-.
T Consensus 112 k~v~~wD~~tG~~~rk~k-----~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~ 185 (338)
T KOG0265|consen 112 KTVRGWDAETGKRIRKHK-----GHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDT 185 (338)
T ss_pred ceEEEEecccceeeehhc-----cccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccc
Confidence 3345666663 4444443 234555555542 0012456677779999999988554 344677899999999
Q ss_pred CcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeee---------cCceEEEEecC---------EEEEEcCCCC
Q 003205 228 GNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC---------GMDSVLLYWND---------MLVMVAPQAE 289 (839)
Q Consensus 228 g~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~Wc---------G~d~vv~~~~~---------~l~lig~~~~ 289 (839)
+..+-++.-|+.|++|+.--.+.+.....+ ..+...|.=. +-|+++..|+- ...+.|+.-.
T Consensus 186 s~qv~sggIdn~ikvWd~r~~d~~~~lsGh-~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hn 264 (338)
T KOG0265|consen 186 SDQVISGGIDNDIKVWDLRKNDGLYTLSGH-ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHN 264 (338)
T ss_pred ccceeeccccCceeeeccccCcceEEeecc-cCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhh
Confidence 999999999999999986323333222222 2233333332 45678888852 2344453321
Q ss_pred ------ceEeccCCCeEEeecCCc-eEEEccCcceeeeccchhhHhhhccCCCChhhhHHHH
Q 003205 290 ------PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDA 344 (839)
Q Consensus 290 ------~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~~~~vf~igS~~pga~L~~A 344 (839)
+..|++++..+-....|- +-||+.+.-.++.+.|++...|-.+.+-+.-.+|+.+
T Consensus 265 feknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~ 326 (338)
T KOG0265|consen 265 FEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSC 326 (338)
T ss_pred hhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEe
Confidence 678888888888888885 9999999999999999999998877766655555443
No 84
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.05 E-value=7.3e-09 Score=112.41 Aligned_cols=222 Identities=15% Similarity=0.105 Sum_probs=156.0
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC-CceeEEEecCCCCCeEEEeecCCCe--EEEEEeCCe
Q 003205 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-VLISETVWKNPGGRLIGMSWSEDQT--LICVVQDGT 109 (839)
Q Consensus 33 l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G-~ll~ti~~~~~~~~I~~~~fs~de~--Lv~v~~dGt 109 (839)
-..+.+.|..+|.+.|... ..|.|+||+..- ..+.++..|+ .++....|+|++. |+++++|++
T Consensus 69 ~~v~s~~fR~DG~LlaaGD------------~sG~V~vfD~k~r~iLR~~~ah~--apv~~~~f~~~d~t~l~s~sDd~v 134 (487)
T KOG0310|consen 69 DVVYSVDFRSDGRLLAAGD------------ESGHVKVFDMKSRVILRQLYAHQ--APVHVTKFSPQDNTMLVSGSDDKV 134 (487)
T ss_pred cceeEEEeecCCeEEEccC------------CcCcEEEeccccHHHHHHHhhcc--CceeEEEecccCCeEEEecCCCce
Confidence 3456888888999888764 469999999544 3678899999 9999999999765 579999999
Q ss_pred EEEEeCCCCccc-cCCCCCccccccCeEEEEEEC-CeEEEEecCCe-EEEEecCCC--ceEEEcCCCCCCCCCceEEEeC
Q 003205 110 VYRYNIHAELIE-PNASMGKECFEENVVECVFWG-NGVVCVTEANR-YFCMADFAT--MKVCELARPEVEELPHCVAVIE 184 (839)
Q Consensus 110 v~l~~~~G~~~~-~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~~~-~~~v~~~~~--~~~~~l~~~~~~~~~~~w~vi~ 184 (839)
+++|++.+...+ ...|| ++-|.+..+.| ++-.++|++++ .+.+|+... +....|. -+.+......+|
T Consensus 135 ~k~~d~s~a~v~~~l~~h-----tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln---hg~pVe~vl~lp 206 (487)
T KOG0310|consen 135 VKYWDLSTAYVQAELSGH-----TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN---HGCPVESVLALP 206 (487)
T ss_pred EEEEEcCCcEEEEEecCC-----cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec---CCCceeeEEEcC
Confidence 999999887754 56778 78899999988 89899999875 667776542 2333332 112334433344
Q ss_pred CCCCCCCcEEEEEEeCCeEEEEecC-Ccc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCC
Q 003205 185 PKYTMTGSVEVLIGTDAGILMLDED-GVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCES 258 (839)
Q Consensus 185 ~~~S~~~~~~v~~s~d~tv~l~~~~-~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~ 258 (839)
+|+.+++++ ++.|++||.. |++ ..|...|+.+.+..+|..+-+++-||.++|++.+--+....+ .-
T Consensus 207 -----sgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~--~~ 278 (487)
T KOG0310|consen 207 -----SGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW--KY 278 (487)
T ss_pred -----CCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee--ec
Confidence 677777665 4568999988 665 348899999999999999999999999999983312222222 21
Q ss_pred CCCCCceeee-cCceEEEEecCEEEEE
Q 003205 259 ALPPEQIAWC-GMDSVLLYWNDMLVMV 284 (839)
Q Consensus 259 ~~~p~~~~Wc-G~d~vv~~~~~~l~li 284 (839)
..+..+|+-. |++++++--.+.+.++
T Consensus 279 ~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 279 PGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ccceeeEEecCCCceEEEecccceeee
Confidence 2344455444 3444444444444433
No 85
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=4.3e-09 Score=116.71 Aligned_cols=238 Identities=11% Similarity=0.090 Sum_probs=165.1
Q ss_pred CCceEEEEcCCCC-ceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEE
Q 003205 64 ALRKLRIFNSAGV-LISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVF 140 (839)
Q Consensus 64 ~~~~I~iy~~~G~-ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~ 140 (839)
..+.++|||..-+ ++.+|.-.. -+|.+-.|-+.-+ ++++++|+.||+||+ .|+-.+.+-.| .+-|..+.+
T Consensus 33 ynG~V~IWnyetqtmVksfeV~~--~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH-----~DyIR~iav 105 (794)
T KOG0276|consen 33 YNGDVQIWNYETQTMVKSFEVSE--VPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAH-----SDYIRSIAV 105 (794)
T ss_pred ecCeeEEEecccceeeeeeeecc--cchhhheeeeccceEEEecCCceEEEEecccceeeEEeecc-----ccceeeeee
Confidence 5799999998664 677888776 7888888988777 589999999999986 45555555567 677899999
Q ss_pred ECCeEEEEecCCe-EEEEecCCCceEEEcCCCCCCCCCceEEE-eCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----c
Q 003205 141 WGNGVVCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAV-IEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----K 213 (839)
Q Consensus 141 ~~~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~~w~v-i~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~ 213 (839)
+|+--.++|++.+ ...+|+.+..- .......++..=.++| +.|. |.++.+.++-|+||++|+..... .
T Consensus 106 HPt~P~vLtsSDDm~iKlW~we~~w--a~~qtfeGH~HyVMqv~fnPk---D~ntFaS~sLDrTVKVWslgs~~~nfTl~ 180 (794)
T KOG0276|consen 106 HPTLPYVLTSSDDMTIKLWDWENEW--ACEQTFEGHEHYVMQVAFNPK---DPNTFASASLDRTVKVWSLGSPHPNFTLE 180 (794)
T ss_pred cCCCCeEEecCCccEEEEeeccCce--eeeeEEcCcceEEEEEEecCC---CccceeeeeccccEEEEEcCCCCCceeee
Confidence 9977777887655 57788876431 1111112233444555 5553 88899999999999999988654 6
Q ss_pred ccCCCceEEEECCCC--cEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCCce
Q 003205 214 VDDTLSQKMAVSPNG--NFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPV 291 (839)
Q Consensus 214 ~~~~~i~~ia~Spng--~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v 291 (839)
+|...|+.|.+=|-| .++.++++|.+++||+=.-.+++.....|.. +-..+
T Consensus 181 gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~---------------------------Nvs~v 233 (794)
T KOG0276|consen 181 GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN---------------------------NVSFV 233 (794)
T ss_pred ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc---------------------------cceEE
Confidence 788889999998877 4899999999999996333334434433321 00123
Q ss_pred EeccCCCeEEeecCCc-eEEEccCcceeeeccchhhHhhhccCCCChhhh
Q 003205 292 QYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIGSTSPAAL 340 (839)
Q Consensus 292 ~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~~~~vf~igS~~pga~ 340 (839)
.|-+.-|++++...|| +|||.+....+-..+.-..++|+.|++...+..
T Consensus 234 ~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~ 283 (794)
T KOG0276|consen 234 FFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGK 283 (794)
T ss_pred EecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCe
Confidence 3444456777777787 888877766555555555566666654443333
No 86
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.03 E-value=4.8e-09 Score=118.59 Aligned_cols=191 Identities=15% Similarity=0.118 Sum_probs=141.8
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC------CCceeEEEecC-----CCCCeEEEeecCCCeE
Q 003205 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA------GVLISETVWKN-----PGGRLIGMSWSEDQTL 101 (839)
Q Consensus 33 l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~------G~ll~ti~~~~-----~~~~I~~~~fs~de~L 101 (839)
-.-+.++.+|+|.-.++++ .|.+|++|+.. |..-.-+..++ ..+.|.++.+|||+.+
T Consensus 455 gaIWsi~~~pD~~g~vT~s------------aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 455 GAIWSISLSPDNKGFVTGS------------ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred cceeeeeecCCCCceEEec------------CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 3445677777777666665 69999999842 33322122222 1268999999999995
Q ss_pred -EEEEeCCeEEEEeCC-CCccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCceEEEcCCCCCCCCCc
Q 003205 102 -ICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMKVCELARPEVEELPH 178 (839)
Q Consensus 102 -v~v~~dGtv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~ 178 (839)
++..-|.||++|-++ -+|.-..+|| .-.|.+.-+++++..++|++-+ -+.+|+.+-..+.+ + -..++.+
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLYGH-----kLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHK--S-~fAHdDS 594 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLYGH-----KLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHK--S-FFAHDDS 594 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeeccc-----ccceeEEeccCCcCeEEeccCCCceEEeccccchhhh--h-hhcccCc
Confidence 688899999999653 4666668999 6679999999999999998653 56788776333322 1 0114455
Q ss_pred eEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 179 CVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 179 ~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
.++| .|-|........+.|+.|+.||-..-. .+|...|+.++++|||.++.+.+.|.+|.+|..+
T Consensus 595 vm~V---~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 595 VMSV---QFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred eeEE---EEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 5555 555577888889999999999877543 6788999999999999999999999999999865
No 87
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.9e-08 Score=112.94 Aligned_cols=253 Identities=15% Similarity=0.167 Sum_probs=169.4
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCe
Q 003205 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGT 109 (839)
Q Consensus 32 ~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGt 109 (839)
|+....+..+ .++.+|++. ...|-+|+. +|....-...+. +.|.++.|+++|. |+++..+|+
T Consensus 177 DfY~nlldWs-s~n~laVal-------------g~~vylW~~~s~~v~~l~~~~~--~~vtSv~ws~~G~~LavG~~~g~ 240 (484)
T KOG0305|consen 177 DFYLNLLDWS-SANVLAVAL-------------GQSVYLWSASSGSVTELCSFGE--ELVTSVKWSPDGSHLAVGTSDGT 240 (484)
T ss_pred cHhhhHhhcc-cCCeEEEEe-------------cceEEEEecCCCceEEeEecCC--CceEEEEECCCCCEEEEeecCCe
Confidence 4444455556 566788874 578999995 565444455555 8899999999997 789999999
Q ss_pred EEEEeCCCC-ccccCCC-CCccccccCeEEEEEECCeEEEEecCCeE-EEEecCCCceEEEcCCCCCCCCCceEEEeCCC
Q 003205 110 VYRYNIHAE-LIEPNAS-MGKECFEENVVECVFWGNGVVCVTEANRY-FCMADFATMKVCELARPEVEELPHCVAVIEPK 186 (839)
Q Consensus 110 v~l~~~~G~-~~~~~~g-~~~~~~~~~V~~~~~~~~G~v~~t~~~~~-~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~ 186 (839)
|.+||..-. -.....+ | ...|- +.-|. +.++.++++.. +...++..+. .+... + ..|.=.|=--.
T Consensus 241 v~iwD~~~~k~~~~~~~~h-----~~rvg-~laW~-~~~lssGsr~~~I~~~dvR~~~--~~~~~-~--~~H~qeVCgLk 308 (484)
T KOG0305|consen 241 VQIWDVKEQKKTRTLRGSH-----ASRVG-SLAWN-SSVLSSGSRDGKILNHDVRISQ--HVVST-L--QGHRQEVCGLK 308 (484)
T ss_pred EEEEehhhccccccccCCc-----CceeE-EEecc-CceEEEecCCCcEEEEEEecch--hhhhh-h--hcccceeeeeE
Confidence 999986433 2444444 5 34444 44465 55556654432 2222221111 11110 1 11111111124
Q ss_pred CCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCC-cEEEEee--cCCeEEEEecCCCCccccccCCC
Q 003205 187 YTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNG-NFVACFT--HDGRLVVNNTNFSSPVIDESCES 258 (839)
Q Consensus 187 ~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng-~~iA~~~--~~g~i~i~ssd~~~~l~e~~~~~ 258 (839)
+++|+...+..+.|+.+.+||..... ..|.+.|.+|+++|-- ..||+++ .|++|++|+...+..+...++.+
T Consensus 309 ws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs 388 (484)
T KOG0305|consen 309 WSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS 388 (484)
T ss_pred ECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC
Confidence 56699999999999999999996554 5788999999999964 4788865 57899999999888888887775
Q ss_pred CCCCCceeee------------c-CceEEEEecC---EEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEccC
Q 003205 259 ALPPEQIAWC------------G-MDSVLLYWND---MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSNS 314 (839)
Q Consensus 259 ~~~p~~~~Wc------------G-~d~vv~~~~~---~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit~~ 314 (839)
.+-.|.|. + ++..+..|+. ...|.||... +...++|+..+++.--|. +|+|.--
T Consensus 389 --QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 389 --QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred --ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence 67899997 1 3334444443 5667778776 666778888888888887 8888764
No 88
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.03 E-value=8.9e-09 Score=112.03 Aligned_cols=181 Identities=12% Similarity=0.114 Sum_probs=123.0
Q ss_pred ccCCceEEEEcCCCCc--eeEE----EecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeCCCCc-cccCC---------
Q 003205 62 ESALRKLRIFNSAGVL--ISET----VWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAEL-IEPNA--------- 124 (839)
Q Consensus 62 ~~~~~~I~iy~~~G~l--l~ti----~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~G~~-~~~~~--------- 124 (839)
++.|.+|++|+.+|-= ...+ +.+. ..|.++.||+.+. +++++.....+|+|.+|.. .++..
T Consensus 185 Gs~Dy~v~~wDf~gMdas~~~fr~l~P~E~--h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~ 262 (641)
T KOG0772|consen 185 GSLDYTVKFWDFQGMDASMRSFRQLQPCET--HQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMY 262 (641)
T ss_pred ccccceEEEEecccccccchhhhccCcccc--cccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhh
Confidence 3589999999999942 1122 1222 5699999999875 7899999999999988864 44433
Q ss_pred ---CCCccccccCeEEEEEEC-CeEEEEecCC----eEEEEecCCCceEEEcCCCCCC-C-CCceEEEeCCCCCCCCcEE
Q 003205 125 ---SMGKECFEENVVECVFWG-NGVVCVTEAN----RYFCMADFATMKVCELARPEVE-E-LPHCVAVIEPKYTMTGSVE 194 (839)
Q Consensus 125 ---g~~~~~~~~~V~~~~~~~-~G~v~~t~~~----~~~~v~~~~~~~~~~l~~~~~~-~-~~~~w~vi~~~~S~~~~~~ 194 (839)
|| ...+.+..+.| +--.++|.+. ++|.|+|..+. ..-+...+.+ . .|..-| .|++||..+
T Consensus 263 nTKGH-----ia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q-~qVik~k~~~g~Rv~~tsC----~~nrdg~~i 332 (641)
T KOG0772|consen 263 NTKGH-----IAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ-LQVIKTKPAGGKRVPVTSC----AWNRDGKLI 332 (641)
T ss_pred ccCCc-----eeeeeccccccCcccceEEecCCCcEEEEecCCchhh-eeEEeeccCCCcccCceee----ecCCCcchh
Confidence 44 33455555555 4445555433 56777765533 2223221211 1 111111 477799998
Q ss_pred EEEEeCCeEEEEecCCcc--------cccCC--CceEEEECCCCcEEEEeecCCeEEEEecC-CCCccccc
Q 003205 195 VLIGTDAGILMLDEDGVQ--------KVDDT--LSQKMAVSPNGNFVACFTHDGRLVVNNTN-FSSPVIDE 254 (839)
Q Consensus 195 v~~s~d~tv~l~~~~~~~--------~~~~~--~i~~ia~Spng~~iA~~~~~g~i~i~ssd-~~~~l~e~ 254 (839)
+.+-.||.|-.|+..+.. ..|.. .|+.|+||++|++|++=+.|+++++|+.. |.+.|.++
T Consensus 333 Aagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~ 403 (641)
T KOG0772|consen 333 AAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVR 403 (641)
T ss_pred hhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhh
Confidence 888889999999975432 23444 79999999999999999999999999854 77777554
No 89
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.01 E-value=2.6e-08 Score=102.93 Aligned_cols=187 Identities=12% Similarity=0.167 Sum_probs=131.9
Q ss_pred cCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCC---eEEEEEeCCeEEEEeCC-CCccccCCCCCccccccCeEE
Q 003205 63 SALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQ---TLICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVE 137 (839)
Q Consensus 63 ~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de---~Lv~v~~dGtv~l~~~~-G~~~~~~~g~~~~~~~~~V~~ 137 (839)
+.|.+|+||+. .-..++++--|. |.|.++.|+++- +|+++++||.|-+|+.. -++.....+| ...|.+
T Consensus 60 ssDetI~IYDm~k~~qlg~ll~Ha--gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H-----~~~Vt~ 132 (362)
T KOG0294|consen 60 SSDETIHIYDMRKRKQLGILLSHA--GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAH-----KGQVTD 132 (362)
T ss_pred CCCCcEEEEeccchhhhcceeccc--cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccc-----ccccce
Confidence 37999999995 456788888888 999999999987 89999999999999742 2446667777 566999
Q ss_pred EEEECCeEEEEecCCe-EEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc--c-
Q 003205 138 CVFWGNGVVCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--K- 213 (839)
Q Consensus 138 ~~~~~~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~--~- 213 (839)
+.+.|+|...++-.++ +...||+...+.--.. ++...++. | .|+|.|...++...++ |-+|..+... .
T Consensus 133 lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~--~L~~~at~--v---~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~ 204 (362)
T KOG0294|consen 133 LSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL--NLKNKATL--V---SWSPQGDHFVVSGRNK-IDIYQLDNASVFRE 204 (362)
T ss_pred eEecCCCceEEEEcCCceeeeehhhcCccceee--ccCCccee--e---EEcCCCCEEEEEeccE-EEEEecccHhHhhh
Confidence 9999999998886654 6777877643321111 12223332 2 5666888766666554 5666666543 1
Q ss_pred -ccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCcee
Q 003205 214 -VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIA 266 (839)
Q Consensus 214 -~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~ 266 (839)
..+..+..+.|- ++..++.+.++++|.+|+.|-...+++|..+ ..+.++|.
T Consensus 205 i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH-~~RVK~i~ 256 (362)
T KOG0294|consen 205 IENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH-ENRVKDIA 256 (362)
T ss_pred hhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc-hhheeeeE
Confidence 122334444443 4458888889999999998878888888887 34566654
No 90
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.01 E-value=6e-09 Score=119.19 Aligned_cols=211 Identities=16% Similarity=0.210 Sum_probs=141.0
Q ss_pred cccccccccEEeeccccccccCC---------------CCCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEE
Q 003205 7 AAEWQLVYNRYYRKPELYQMRWK---------------HIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIF 71 (839)
Q Consensus 7 ~~~W~~Lg~~~yr~~e~y~m~w~---------------~~~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy 71 (839)
-.+|...--+...+.+.|.++|. +.|.....|+++++|...-+.. ..++|.+|
T Consensus 408 E~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~------------S~G~Id~f 475 (910)
T KOG1539|consen 408 EKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY------------SKGTIDRF 475 (910)
T ss_pred hhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEec------------cCCeEEEE
Confidence 45677766666677777766652 1334556889999988766553 68999999
Q ss_pred cC-CCCceeEE---EecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeCCCCccc--cCCCCCccccccCeEEEEEECCe
Q 003205 72 NS-AGVLISET---VWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAELIE--PNASMGKECFEENVVECVFWGNG 144 (839)
Q Consensus 72 ~~-~G~ll~ti---~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~G~~~~--~~~g~~~~~~~~~V~~~~~~~~G 144 (839)
|. +|-.-.++ +.|. +.|.+++-..-.+ +|++..+|.+++|++.++... ..+|++ ...+..-+ ..|
T Consensus 476 NmQSGi~r~sf~~~~ah~--~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~----~~~iv~hr--~s~ 547 (910)
T KOG1539|consen 476 NMQSGIHRKSFGDSPAHK--GEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSS----ITGIVYHR--VSD 547 (910)
T ss_pred EcccCeeecccccCcccc--CceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCC----cceeeeee--hhh
Confidence 95 66666777 5677 8999998876555 689999999999998776533 333432 11222111 134
Q ss_pred EEEEe-cCCeEEEEecCCCce-EEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCC-cc---cccCCC
Q 003205 145 VVCVT-EANRYFCMADFATMK-VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDG-VQ---KVDDTL 218 (839)
Q Consensus 145 ~v~~t-~~~~~~~v~~~~~~~-~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~-~~---~~~~~~ 218 (839)
++++. .+..+..++- ...+ .+.|. +++.. +..-.|||||..+++++.|++|.+||.-. +. ..-..|
T Consensus 548 l~a~~~ddf~I~vvD~-~t~kvvR~f~----gh~nr---itd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~ 619 (910)
T KOG1539|consen 548 LLAIALDDFSIRVVDV-VTRKVVREFW----GHGNR---ITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSP 619 (910)
T ss_pred hhhhhcCceeEEEEEc-hhhhhhHHhh----ccccc---eeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCc
Confidence 33322 3344444443 2222 12221 12222 23336889999999999999999999664 43 345678
Q ss_pred ceEEEECCCCcEEEEeecCCe-EEEEec
Q 003205 219 SQKMAVSPNGNFVACFTHDGR-LVVNNT 245 (839)
Q Consensus 219 i~~ia~Spng~~iA~~~~~g~-i~i~ss 245 (839)
...|+|||||+++|+...|+. |++|+.
T Consensus 620 ~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 620 CTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred ceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 899999999999999999866 888863
No 91
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=2.5e-07 Score=91.21 Aligned_cols=206 Identities=17% Similarity=0.167 Sum_probs=130.8
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC---C----ceeEEEecCCCCCeEEEeecCCCeE-EEE
Q 003205 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG---V----LISETVWKNPGGRLIGMSWSEDQTL-ICV 104 (839)
Q Consensus 33 l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G---~----ll~ti~~~~~~~~I~~~~fs~de~L-v~v 104 (839)
.....|+|-|.||+-|+.++. |...+-. ....|++-...- + +-..-+.|. |.|.+.+|||+|+| +++
T Consensus 33 qairav~fhp~g~lyavgsns-kt~ric~--yp~l~~~r~~hea~~~pp~v~~kr~khhk--gsiyc~~ws~~geliatg 107 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNS-KTFRICA--YPALIDLRHAHEAAKQPPSVLCKRNKHHK--GSIYCTAWSPCGELIATG 107 (350)
T ss_pred hheeeEEecCCCceEEeccCC-ceEEEEc--cccccCcccccccccCCCeEEeeeccccC--ccEEEEEecCccCeEEec
Confidence 345689999999999998752 2221100 111111111100 1 112233455 89999999999997 699
Q ss_pred EeCCeEEEEeCC-------CCccccCCCCCccccccCeEEEEEEC---CeEEEEecC--C--eEEEEecCCCceEEEcCC
Q 003205 105 VQDGTVYRYNIH-------AELIEPNASMGKECFEENVVECVFWG---NGVVCVTEA--N--RYFCMADFATMKVCELAR 170 (839)
Q Consensus 105 ~~dGtv~l~~~~-------G~~~~~~~g~~~~~~~~~V~~~~~~~---~G~v~~t~~--~--~~~~v~~~~~~~~~~l~~ 170 (839)
+.|.+|++-.++ |.-+++++ | +..|.+..|-+ +|-.++.+. + ++|.-+--.+.-..-+.
T Consensus 108 sndk~ik~l~fn~dt~~~~g~dle~nm-h-----dgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s- 180 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATGHDLEFNM-H-----DGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS- 180 (350)
T ss_pred CCCceEEEEecccccccccCcceeeee-c-----CCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec-
Confidence 999999987543 33345555 3 56789999964 444444432 3 56654432222122221
Q ss_pred CCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc------------cccCCCceEEEECCCCcEEEEeecCC
Q 003205 171 PEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------------KVDDTLSQKMAVSPNGNFVACFTHDG 238 (839)
Q Consensus 171 ~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~------------~~~~~~i~~ia~Spng~~iA~~~~~g 238 (839)
+++.+..+ .||=+|-+.+..+.|.||..||..-.. ......|.++++.|.|+++|++..|.
T Consensus 181 ---ghtghila----lyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds 253 (350)
T KOG0641|consen 181 ---GHTGHILA----LYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS 253 (350)
T ss_pred ---CCcccEEE----EEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC
Confidence 13344332 344588899999999999999977321 23445699999999999999999998
Q ss_pred eEEEEecCCCCccccccCC
Q 003205 239 RLVVNNTNFSSPVIDESCE 257 (839)
Q Consensus 239 ~i~i~ssd~~~~l~e~~~~ 257 (839)
.-.+++..-++.+..|..+
T Consensus 254 sc~lydirg~r~iq~f~ph 272 (350)
T KOG0641|consen 254 SCMLYDIRGGRMIQRFHPH 272 (350)
T ss_pred ceEEEEeeCCceeeeeCCC
Confidence 8777776667777777655
No 92
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.00 E-value=9.2e-09 Score=111.48 Aligned_cols=206 Identities=12% Similarity=0.152 Sum_probs=142.5
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCC-e-EEEEEeCCeEEE
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQ-T-LICVVQDGTVYR 112 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de-~-Lv~v~~dGtv~l 112 (839)
..++++++|.-+-+++ .|++|++|+ -.|+-+.++... ..+.++.|.||+ + ++++..||.|+.
T Consensus 262 rd~~~s~~g~~fLS~s------------fD~~lKlwDtETG~~~~~f~~~---~~~~cvkf~pd~~n~fl~G~sd~ki~~ 326 (503)
T KOG0282|consen 262 RDASFNNCGTSFLSAS------------FDRFLKLWDTETGQVLSRFHLD---KVPTCVKFHPDNQNIFLVGGSDKKIRQ 326 (503)
T ss_pred hhhhccccCCeeeeee------------cceeeeeeccccceEEEEEecC---CCceeeecCCCCCcEEEEecCCCcEEE
Confidence 3566777777776664 799999999 589999988753 478999999998 4 579999999999
Q ss_pred EeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCceEEEc-CCCCCCCCCceEEEeCCCCCC
Q 003205 113 YNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKVCEL-ARPEVEELPHCVAVIEPKYTM 189 (839)
Q Consensus 113 ~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~~~~l-~~~~~~~~~~~w~vi~~~~S~ 189 (839)
||+ .|++.+..-.| -..|.++.|.++|--+++++- .-+.+|.+..|-+..+ .++ ...++=++ .-+|
T Consensus 327 wDiRs~kvvqeYd~h-----Lg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~---~~hsmP~~---~~~P 395 (503)
T KOG0282|consen 327 WDIRSGKVVQEYDRH-----LGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADP---EMHTMPCL---TLHP 395 (503)
T ss_pred EeccchHHHHHHHhh-----hhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcch---hhccCcce---ecCC
Confidence 985 68875533333 456899999998888777644 3345555544433332 221 12222223 1233
Q ss_pred CCcEEEEEEeCCeEEEEecCCcc--------ccc--CCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCC
Q 003205 190 TGSVEVLIGTDAGILMLDEDGVQ--------KVD--DTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESA 259 (839)
Q Consensus 190 ~~~~~v~~s~d~tv~l~~~~~~~--------~~~--~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~ 259 (839)
++...+-=+.|+-+++++....- .+| .|--.++.|||||.+|++++.+|.+++|+-.....++.+.++ .
T Consensus 396 ~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah-~ 474 (503)
T KOG0282|consen 396 NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH-D 474 (503)
T ss_pred CCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC-C
Confidence 78888877889988888765331 233 233579999999999999999999999987766666666555 2
Q ss_pred CCCCceeee
Q 003205 260 LPPEQIAWC 268 (839)
Q Consensus 260 ~~p~~~~Wc 268 (839)
.+..++.|-
T Consensus 475 ~~ci~v~wH 483 (503)
T KOG0282|consen 475 QPCIGVDWH 483 (503)
T ss_pred cceEEEEec
Confidence 344444443
No 93
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=5.4e-08 Score=97.33 Aligned_cols=186 Identities=15% Similarity=0.181 Sum_probs=127.1
Q ss_pred CCCCeEEEEecCchhhhhhcccCCceEEEEc--CCC--CceeEEEecCCCCCeEEEeecC--CCe-EEEEEeCCeEEEEe
Q 003205 42 PFGGPIAVIRDDSKIVQLYAESALRKLRIFN--SAG--VLISETVWKNPGGRLIGMSWSE--DQT-LICVVQDGTVYRYN 114 (839)
Q Consensus 42 p~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~--~~G--~ll~ti~~~~~~~~I~~~~fs~--de~-Lv~v~~dGtv~l~~ 114 (839)
-||.-||+.+ .|++|+||. ++| +++.++.+|+ |++..++|-+ -|. |++.+-||.|.+|.
T Consensus 21 yygkrlATcs------------SD~tVkIf~v~~n~~s~ll~~L~Gh~--GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 21 YYGKRLATCS------------SDGTVKIFEVRNNGQSKLLAELTGHS--GPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhcceeeeec------------CCccEEEEEEcCCCCceeeeEecCCC--CCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 3788888886 799999998 455 6899999999 9999999998 566 68999999999996
Q ss_pred -CCCCcccc--CCCCCccccccCeEEEEEEC--CeEEEEe--cCCeEEEEecCCC-c-eEEEcCC-CCCCCCCceEEEe-
Q 003205 115 -IHAELIEP--NASMGKECFEENVVECVFWG--NGVVCVT--EANRYFCMADFAT-M-KVCELAR-PEVEELPHCVAVI- 183 (839)
Q Consensus 115 -~~G~~~~~--~~g~~~~~~~~~V~~~~~~~--~G~v~~t--~~~~~~~v~~~~~-~-~~~~l~~-~~~~~~~~~w~vi- 183 (839)
-.|.+.+. .-.| +..|.++.+-| .|+.++. ++|++-.+.--.+ . ...++.. ...+-..-||+--
T Consensus 87 e~~g~w~k~~e~~~h-----~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~ 161 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAH-----SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPAS 161 (299)
T ss_pred cCCCchhhhhhhhhh-----cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcC
Confidence 45655332 2234 55677777754 7777665 4666654431111 1 1111111 1122223345431
Q ss_pred -C-CCCCCCC----cEEEEEEeCCeEEEEecCCcc-------cccCCCceEEEECCCC----cEEEEeecCCeEEEEecC
Q 003205 184 -E-PKYTMTG----SVEVLIGTDAGILMLDEDGVQ-------KVDDTLSQKMAVSPNG----NFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 184 -~-~~~S~~~----~~~v~~s~d~tv~l~~~~~~~-------~~~~~~i~~ia~Spng----~~iA~~~~~g~i~i~ssd 246 (839)
| +.++... ...|..+.|+.|++|..+.-. ..|.+.|..+|..|+- -.||+.++||++.||+.+
T Consensus 162 ~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 162 APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred CCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence 1 1111111 357888889999999988633 5788899999999985 379999999999999877
No 94
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=3.5e-08 Score=101.80 Aligned_cols=256 Identities=15% Similarity=0.230 Sum_probs=167.4
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeE-EEecCCCCCeEEEeecCCCe-EEEEEeCCeEEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISE-TVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYR 112 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~t-i~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l 112 (839)
-....|+|+|-.+|+.- .+|.|-||+..-.-++. +..|. -+|-+++||+||+ |++.+.|..+.+
T Consensus 26 a~~~~Fs~~G~~lAvGc------------~nG~vvI~D~~T~~iar~lsaH~--~pi~sl~WS~dgr~LltsS~D~si~l 91 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGC------------ANGRVVIYDFDTFRIARMLSAHV--RPITSLCWSRDGRKLLTSSRDWSIKL 91 (405)
T ss_pred cceEEeccCcceeeeec------------cCCcEEEEEccccchhhhhhccc--cceeEEEecCCCCEeeeecCCceeEE
Confidence 45888999999999986 68999999977655555 66787 8999999999998 689999999999
Q ss_pred Ee-CCCCccccCCCCCccccccCeEEEEEEC--CeEEEEe-cCCeEEEEecCCCceEEEcCCCCCCCCCceEEEeC--CC
Q 003205 113 YN-IHAELIEPNASMGKECFEENVVECVFWG--NGVVCVT-EANRYFCMADFATMKVCELARPEVEELPHCVAVIE--PK 186 (839)
Q Consensus 113 ~~-~~G~~~~~~~g~~~~~~~~~V~~~~~~~--~G~v~~t-~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~--~~ 186 (839)
|| +.|...+-.. +...|+.|.+.| ...++++ .+.. -.+-.+..|....|+.- ++..-...+ -.
T Consensus 92 wDl~~gs~l~rir------f~spv~~~q~hp~k~n~~va~~~~~s-p~vi~~s~~~h~~Lp~d----~d~dln~sas~~~ 160 (405)
T KOG1273|consen 92 WDLLKGSPLKRIR------FDSPVWGAQWHPRKRNKCVATIMEES-PVVIDFSDPKHSVLPKD----DDGDLNSSASHGV 160 (405)
T ss_pred EeccCCCceeEEE------ccCccceeeeccccCCeEEEEEecCC-cEEEEecCCceeeccCC----Ccccccccccccc
Confidence 98 5787633211 145689999887 4444444 2322 12222333555556531 111111111 13
Q ss_pred CCCCCcEEEEEEeCCeEEEEecCCcc-----ccc-CCCceEEEECCCCcEEEEeecCCeEEEEecC-CCCc------ccc
Q 003205 187 YTMTGSVEVLIGTDAGILMLDEDGVQ-----KVD-DTLSQKMAVSPNGNFVACFTHDGRLVVNNTN-FSSP------VID 253 (839)
Q Consensus 187 ~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~-~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd-~~~~------l~e 253 (839)
|.+.|+.++....-|.+.+++..... +.. ...|.+|-||.+|+++++=+.|.+|+.++.. .... -.+
T Consensus 161 fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~ 240 (405)
T KOG1273|consen 161 FDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPE 240 (405)
T ss_pred ccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChh
Confidence 66788888888888888888877543 333 3778999999999999999999999999743 1111 001
Q ss_pred ccCCCCCCCCceee--e---cC---------ceEEE-EecC----EE-EEEcCCCC---ceEeccCCCeEEeecCCceEE
Q 003205 254 ESCESALPPEQIAW--C---GM---------DSVLL-YWND----ML-VMVAPQAE---PVQYFYDEPLVLIPECDGVRI 310 (839)
Q Consensus 254 ~~~~~~~~p~~~~W--c---G~---------d~vv~-~~~~----~l-~lig~~~~---~v~f~~~~~~~l~~E~DGvRI 310 (839)
+.. +.......| | |+ .+-++ .|+. .+ .|-|+.|+ -|.|-+-.+++++-+.+-++|
T Consensus 241 ~K~--qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~i 318 (405)
T KOG1273|consen 241 HKL--QDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYI 318 (405)
T ss_pred HHH--HHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEE
Confidence 111 112345666 2 21 12222 4664 23 46678876 445666566776666666999
Q ss_pred EccCcce
Q 003205 311 LSNSSME 317 (839)
Q Consensus 311 it~~~~~ 317 (839)
|+....+
T Consensus 319 w~~~~~e 325 (405)
T KOG1273|consen 319 WAVVQVE 325 (405)
T ss_pred EEeeccc
Confidence 9987433
No 95
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=2.5e-08 Score=107.53 Aligned_cols=227 Identities=17% Similarity=0.177 Sum_probs=152.5
Q ss_pred CCCeEEEeecCCCeE-EEEEeCCeEEEEeCCCCcccc--CCCCCccccccCeEEEEEECCeE-EEEecCCe-EEEEecCC
Q 003205 87 GGRLIGMSWSEDQTL-ICVVQDGTVYRYNIHAELIEP--NASMGKECFEENVVECVFWGNGV-VCVTEANR-YFCMADFA 161 (839)
Q Consensus 87 ~~~I~~~~fs~de~L-v~v~~dGtv~l~~~~G~~~~~--~~g~~~~~~~~~V~~~~~~~~G~-v~~t~~~~-~~~v~~~~ 161 (839)
.+.|.+|.|.|.-.| +++.-||++++|.++|+-..+ ++.. + ...|..+.|.++|. ++++++.+ +++.+++.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l--~--~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL--E--KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee--c--cCccceeeecCCCceEEEecccceEEEEeecc
Confidence 478999999999985 799999999999999986332 3222 1 45688999999999 88887764 77788887
Q ss_pred CceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----cccCCCceEEEECCCCcEEEEeecC
Q 003205 162 TMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHD 237 (839)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~~~~ 237 (839)
.-+..++..+. +.....+.- -..|++++++++.+..|-|.++...... .--.|.+..++||.+|+.|-..+.+
T Consensus 289 ~ak~~k~~~~~-g~e~~~~e~--FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~ 365 (514)
T KOG2055|consen 289 TAKVTKLKPPY-GVEEKSMER--FEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT 365 (514)
T ss_pred ccccccccCCC-Ccccchhhe--eEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC
Confidence 76666665422 111111111 1235699999999999999999877654 2346789999999999999998999
Q ss_pred CeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCCceEeccCCCeEEeecCCc-eEEEccCcc
Q 003205 238 GRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDG-VRILSNSSM 316 (839)
Q Consensus 238 g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~~~l~~E~DG-vRIit~~~~ 316 (839)
|.+|+|+.....++..|. .+++| .|.++.-+.++..+.++.--| |-|++.+ .
T Consensus 366 GeV~v~nl~~~~~~~rf~-------------D~G~v-------------~gts~~~S~ng~ylA~GS~~GiVNIYd~~-s 418 (514)
T KOG2055|consen 366 GEVYVWNLRQNSCLHRFV-------------DDGSV-------------HGTSLCISLNGSYLATGSDSGIVNIYDGN-S 418 (514)
T ss_pred ceEEEEecCCcceEEEEe-------------ecCcc-------------ceeeeeecCCCceEEeccCcceEEEeccc-h
Confidence 999999866444443332 22222 222333333444333333335 5666654 3
Q ss_pred eeeeccchh-------hHhhhccCCCChhhhHHHHHHH
Q 003205 317 EFLQRVPAS-------TEQIFAIGSTSPAALLYDALDH 347 (839)
Q Consensus 317 ~~l~~Vp~~-------~~~vf~igS~~pga~L~~A~~~ 347 (839)
.|-..-|.. +..|-.+.+.+++.+|.=|+..
T Consensus 419 ~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~ 456 (514)
T KOG2055|consen 419 CFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRV 456 (514)
T ss_pred hhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhc
Confidence 344444444 3445566678889999888775
No 96
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=98.96 E-value=6e-09 Score=108.87 Aligned_cols=162 Identities=14% Similarity=0.076 Sum_probs=121.4
Q ss_pred EEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEEEC-CeEEEEecCCeEEE
Q 003205 80 ETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWG-NGVVCVTEANRYFC 156 (839)
Q Consensus 80 ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~~~~~~ 156 (839)
-|.+|- |+|.++++.|-.+ +++.+.|+|+++||+ .|++..+..|| -..|..+++++ .-.++..+....+.
T Consensus 146 Vi~gHl--gWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGh-----i~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 146 VISGHL--GWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGH-----IETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred hhhhcc--ceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecch-----hheeeeeeecccCceEEEecCCCeeE
Confidence 345555 9999999999766 689999999999996 68887778888 67788999988 55555556666777
Q ss_pred EecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEE
Q 003205 157 MADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFV 231 (839)
Q Consensus 157 v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~i 231 (839)
.|+++..+..+-.-.-+ +..-|.. +.| +-.++++.+.|.++.+||..... .+|..+|.++.+-|-.-.|
T Consensus 219 CwDLe~nkvIR~YhGHl-S~V~~L~-lhP----Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqv 292 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHL-SGVYCLD-LHP----TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQV 292 (460)
T ss_pred EEechhhhhHHHhcccc-ceeEEEe-ccc----cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCce
Confidence 78776544433221001 1222222 333 77889999999999999988653 6899999999999877788
Q ss_pred EEeecCCeEEEEecCCCCccccc
Q 003205 232 ACFTHDGRLVVNNTNFSSPVIDE 254 (839)
Q Consensus 232 A~~~~~g~i~i~ssd~~~~l~e~ 254 (839)
.+.+.|++|.+|+--.++..+..
T Consensus 293 it~S~D~tvrlWDl~agkt~~tl 315 (460)
T KOG0285|consen 293 ITGSHDSTVRLWDLRAGKTMITL 315 (460)
T ss_pred EEecCCceEEEeeeccCceeEee
Confidence 99999999999987666666544
No 97
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=6.3e-08 Score=112.18 Aligned_cols=222 Identities=18% Similarity=0.222 Sum_probs=139.2
Q ss_pred CCeEEEeecCCCe-EEEEEeCCeEEEEeCCC--CccccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCce
Q 003205 88 GRLIGMSWSEDQT-LICVVQDGTVYRYNIHA--ELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMK 164 (839)
Q Consensus 88 ~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~G--~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~ 164 (839)
+....+.|+|+|+ ++++.+||-||+|+-.- +...+.-.+ ...|..+....+ ..+.++..+-+.+..+.++.
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~-----g~~v~~ia~~s~-~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDIS-----GELVSSIACYSN-HFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhcc-----CceeEEEeeccc-ceEEeeccceEEEeeCCCCC
Confidence 5578899999998 57999999999995321 222222212 334555554444 33333334333444444332
Q ss_pred EEE-cCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCC
Q 003205 165 VCE-LARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDG 238 (839)
Q Consensus 165 ~~~-l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g 238 (839)
... |.. +.-+.++-++. -+|+.++.++.|-.|++++.+... +++.+||.++.++|+|.++|..+-||
T Consensus 88 ~~~iL~R--ftlp~r~~~v~-----g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG 160 (933)
T KOG1274|consen 88 EDTILAR--FTLPIRDLAVS-----GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDG 160 (933)
T ss_pred ccceeee--eeccceEEEEe-----cCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCc
Confidence 221 111 11234444443 389999999999999999877543 78999999999999999999999999
Q ss_pred eEEEEecCCCCcccc-------ccCCCCCCCCceeeec----------CceEEEE----ecCEEEEEcCCCC----ceEe
Q 003205 239 RLVVNNTNFSSPVID-------ESCESALPPEQIAWCG----------MDSVLLY----WNDMLVMVAPQAE----PVQY 293 (839)
Q Consensus 239 ~i~i~ssd~~~~l~e-------~~~~~~~~p~~~~WcG----------~d~vv~~----~~~~l~lig~~~~----~v~f 293 (839)
++.||+.+-+...-. ++........+.+|.- +++|.++ |...-.|-+.... .+.|
T Consensus 161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~w 240 (933)
T KOG1274|consen 161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQW 240 (933)
T ss_pred eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEE
Confidence 999998652222111 1111123345777762 3344433 2233333333222 4678
Q ss_pred ccCCCeEEeecCCc-eEEEccCc---ceeeecc
Q 003205 294 FYDEPLVLIPECDG-VRILSNSS---MEFLQRV 322 (839)
Q Consensus 294 ~~~~~~~l~~E~DG-vRIit~~~---~~~l~~V 322 (839)
++.|..+..+..|| |-||..++ |++.++|
T Consensus 241 sPnG~YiAAs~~~g~I~vWnv~t~~~~~~~~~V 273 (933)
T KOG1274|consen 241 SPNGKYIAASTLDGQILVWNVDTHERHEFKRAV 273 (933)
T ss_pred cCCCcEEeeeccCCcEEEEecccchhcccccee
Confidence 88888999999998 99999884 4465555
No 98
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.95 E-value=1.5e-07 Score=99.01 Aligned_cols=252 Identities=15% Similarity=0.168 Sum_probs=164.6
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVY 111 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~ 111 (839)
+...++||-+|+++|+.. .++.|+||. ..|....++-... +.|.=|.|.|-.+ |+.++.||.+-
T Consensus 108 SVt~~~FshdgtlLATGd------------msG~v~v~~~stg~~~~~~~~e~--~dieWl~WHp~a~illAG~~DGsvW 173 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLATGD------------MSGKVLVFKVSTGGEQWKLDQEV--EDIEWLKWHPRAHILLAGSTDGSVW 173 (399)
T ss_pred ceEEEEEccCceEEEecC------------CCccEEEEEcccCceEEEeeccc--CceEEEEecccccEEEeecCCCcEE
Confidence 556889999999999985 689999999 5777888777555 8899999999988 57999999999
Q ss_pred EEeCCC-CccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCC-ceEEEcCCCCCCCCCceEEEeCCCCC
Q 003205 112 RYNIHA-ELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFAT-MKVCELARPEVEELPHCVAVIEPKYT 188 (839)
Q Consensus 112 l~~~~G-~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~-~~~~~l~~~~~~~~~~~w~vi~~~~S 188 (839)
.|.+.. ...+...|| +..+..-+|.|+|.-++|..-+ ...+||... .....+.... +.+..|. .++
T Consensus 174 mw~ip~~~~~kv~~Gh-----~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e--~~~~~~~----~~~ 242 (399)
T KOG0296|consen 174 MWQIPSQALCKVMSGH-----NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE--GLELPCI----SLN 242 (399)
T ss_pred EEECCCcceeeEecCC-----CCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc--cCcCCcc----ccc
Confidence 998654 567778889 6678888999999999997432 345566553 3333333110 1111111 111
Q ss_pred CCCcEEEEEEeCCeEEEEecC-----------Ccc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccc
Q 003205 189 MTGSVEVLIGTDAGILMLDED-----------GVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVI 252 (839)
Q Consensus 189 ~~~~~~v~~s~d~tv~l~~~~-----------~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~ 252 (839)
..+.+.+..+.++.++..+.. +.. ......|-.+.+|..=.+.|+++-||+|-||+..-. .+
T Consensus 243 ~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-~~- 320 (399)
T KOG0296|consen 243 LAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS-TL- 320 (399)
T ss_pred cccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc-hh-
Confidence 133333333333333322221 111 112233556666666678999999999999986522 22
Q ss_pred cccCCCCCCCCceeeec--------CceEEEEecC-----EEEEEcCCCCceEec--cCCCeEEeecCCc-eEEEc
Q 003205 253 DESCESALPPEQIAWCG--------MDSVLLYWND-----MLVMVAPQAEPVQYF--YDEPLVLIPECDG-VRILS 312 (839)
Q Consensus 253 e~~~~~~~~p~~~~WcG--------~d~vv~~~~~-----~l~lig~~~~~v~f~--~~~~~~l~~E~DG-vRIit 312 (839)
++...-+....++.|.+ -|++|-.|+- .....||+-.-..|. ++...++....|+ .||+-
T Consensus 321 R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 321 RHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred heeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 22222245688999987 4466667864 356778877655554 4567788888887 77764
No 99
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=9.3e-09 Score=110.08 Aligned_cols=213 Identities=15% Similarity=0.195 Sum_probs=144.1
Q ss_pred ccccccccEEeeccccccccCC--CCCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEec
Q 003205 8 AEWQLVYNRYYRKPELYQMRWK--HIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWK 84 (839)
Q Consensus 8 ~~W~~Lg~~~yr~~e~y~m~w~--~~~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~ 84 (839)
..|+.+..+-++..+.-...-. .++ .+..||++++|+.+|+.. .|+++|||+ ++=+.+....-|
T Consensus 119 ~~~e~~~~~d~~~~~~a~v~~~l~~~g-~~k~vaf~~~gs~latgg------------~dg~lRv~~~Ps~~t~l~e~~~ 185 (398)
T KOG0771|consen 119 FHFEFVASSDFNAETAANVYQKLVDFG-QQKVVAFNGDGSKLATGG------------TDGTLRVWEWPSMLTILEEIAH 185 (398)
T ss_pred cccccccccccchhhhhhHhHHHhhcC-cceEEEEcCCCCEeeecc------------ccceEEEEecCcchhhhhhHhh
Confidence 4566666544444332211101 122 236999999999999986 699999999 999999888888
Q ss_pred CCCCCeEEEeecCCCe-EEEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEEECCe----EEEEecCC--e---
Q 003205 85 NPGGRLIGMSWSEDQT-LICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNG----VVCVTEAN--R--- 153 (839)
Q Consensus 85 ~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G----~v~~t~~~--~--- 153 (839)
. +.|-+++||||++ |++++.| ..+||+. .|-.....-+.+. ......|+|..++ +.+++... .
T Consensus 186 ~--~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k---~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~ 259 (398)
T KOG0771|consen 186 H--AEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSK---DEMFSSCRFSVDNAQETLRLAASQFPGGGVR 259 (398)
T ss_pred c--CccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCccc---chhhhhceecccCCCceEEEEEecCCCCcee
Confidence 8 9999999999997 5899999 7999974 5644332221111 3445678887643 44444322 1
Q ss_pred EEE--EecCCCceEEEcCCC-CCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc------cccCCCceEEEE
Q 003205 154 YFC--MADFATMKVCELARP-EVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAV 224 (839)
Q Consensus 154 ~~~--v~~~~~~~~~~l~~~-~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~ 224 (839)
.+. +|..+ ..-++... ......++++| |+||+.+++.+.+|.|-+++....+ ..|.+-|+.+.|
T Consensus 260 ~~~~~~w~~~--~~l~~~~~~~~~~siSsl~V-----S~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF 332 (398)
T KOG0771|consen 260 LCDISLWSGS--NFLRLRKKIKRFKSISSLAV-----SDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTF 332 (398)
T ss_pred EEEeeeeccc--cccchhhhhhccCcceeEEE-----cCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEE
Confidence 111 22211 11111110 11145777766 4599999999999999999888775 567888999999
Q ss_pred CCCCcEEEEeecCCeEEEEecC
Q 003205 225 SPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 225 Spng~~iA~~~~~g~i~i~ssd 246 (839)
||+-+.++..+.+.+..|.+..
T Consensus 333 ~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 333 SPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred cCCcCcccccccCCceeEEEEe
Confidence 9999999998888887776544
No 100
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.94 E-value=5.3e-08 Score=104.30 Aligned_cols=217 Identities=12% Similarity=0.109 Sum_probs=150.5
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVY 111 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~ 111 (839)
....|.+.|+--.++.. +.+..|+||+. .......+.-|. ++|.++.-.|.|+ |+.++.||+.-
T Consensus 263 ki~~v~~~~~~~~v~~a------------Sad~~i~vws~~~~s~~~~~~~h~--~~V~~ls~h~tgeYllsAs~d~~w~ 328 (506)
T KOG0289|consen 263 KITSVKFHKDLDTVITA------------SADEIIRVWSVPLSSEPTSSRPHE--EPVTGLSLHPTGEYLLSASNDGTWA 328 (506)
T ss_pred EEEEEEeccchhheeec------------CCcceEEeeccccccCcccccccc--ccceeeeeccCCcEEEEecCCceEE
Confidence 33455566654444443 36899999994 333444455677 8999999999887 78999999988
Q ss_pred EEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCce-EEEcCCCCCCCCCceEEEeCCCCC
Q 003205 112 RYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMK-VCELARPEVEELPHCVAVIEPKYT 188 (839)
Q Consensus 112 l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~-~~~l~~~~~~~~~~~w~vi~~~~S 188 (839)
+.++ .|.....-. ++.. +-.+.++.|+|||..+.|+..+ +..+|+..++. .-.|+ +|.=.|-...||
T Consensus 329 Fsd~~~g~~lt~vs-~~~s--~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp-------ght~~vk~i~Fs 398 (506)
T KOG0289|consen 329 FSDISSGSQLTVVS-DETS--DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-------GHTGPVKAISFS 398 (506)
T ss_pred EEEccCCcEEEEEe-eccc--cceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC-------CCCCceeEEEec
Confidence 7775 565533221 1111 4458899999999999998765 67788877653 22222 122223344789
Q ss_pred CCCcEEEEEEeCCeEEEEecCCcc------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCC--CccccccCCCCC
Q 003205 189 MTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFS--SPVIDESCESAL 260 (839)
Q Consensus 189 ~~~~~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~--~~l~e~~~~~~~ 260 (839)
-+|-.++..+.|+.|++||+.... .....++..++|-+.|+++++++.+-+|+++.+.-. +.+.++..++
T Consensus 399 ENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s-- 476 (506)
T KOG0289|consen 399 ENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHS-- 476 (506)
T ss_pred cCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcc--
Confidence 999999999999999999988543 233447999999999999999988888888864422 2333343332
Q ss_pred CCCceeeecCceEEEE
Q 003205 261 PPEQIAWCGMDSVLLY 276 (839)
Q Consensus 261 ~p~~~~WcG~d~vv~~ 276 (839)
.+..-+|-|+++..+.
T Consensus 477 g~st~v~Fg~~aq~l~ 492 (506)
T KOG0289|consen 477 GLSTGVRFGEHAQYLA 492 (506)
T ss_pred cccceeeecccceEEe
Confidence 4678889898888764
No 101
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.93 E-value=1.1e-08 Score=106.45 Aligned_cols=181 Identities=14% Similarity=0.176 Sum_probs=130.5
Q ss_pred EcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCCCC
Q 003205 40 CAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAE 118 (839)
Q Consensus 40 ~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~ 118 (839)
....|..+.+--|++-++ .++.|.||+||+ ..|+++.++-.|. ..|..+-|+ +|-.|+.+.|.++++|++...
T Consensus 234 ~GHtGSVLCLqyd~rvii---sGSSDsTvrvWDv~tge~l~tlihHc--eaVLhlrf~-ng~mvtcSkDrsiaVWdm~sp 307 (499)
T KOG0281|consen 234 TGHTGSVLCLQYDERVIV---SGSSDSTVRVWDVNTGEPLNTLIHHC--EAVLHLRFS-NGYMVTCSKDRSIAVWDMASP 307 (499)
T ss_pred hcCCCcEEeeeccceEEE---ecCCCceEEEEeccCCchhhHHhhhc--ceeEEEEEe-CCEEEEecCCceeEEEeccCc
Confidence 344455555555554233 236899999999 7999999999999 999999999 889999999999999987543
Q ss_pred ----ccccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCceE-EEcCCCCCCCCCceEEEeCCCCCCCCc
Q 003205 119 ----LIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKV-CELARPEVEELPHCVAVIEPKYTMTGS 192 (839)
Q Consensus 119 ----~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~~-~~l~~~~~~~~~~~w~vi~~~~S~~~~ 192 (839)
+.....|| ...|..+.|.+- .+++.++ +...+|+...... +.|. +....-++..- .|.
T Consensus 308 s~it~rrVLvGH-----rAaVNvVdfd~k--yIVsASgDRTikvW~~st~efvRtl~-----gHkRGIAClQY----r~r 371 (499)
T KOG0281|consen 308 TDITLRRVLVGH-----RAAVNVVDFDDK--YIVSASGDRTIKVWSTSTCEFVRTLN-----GHKRGIACLQY----RDR 371 (499)
T ss_pred hHHHHHHHHhhh-----hhheeeeccccc--eEEEecCCceEEEEeccceeeehhhh-----cccccceehhc----cCe
Confidence 35567888 455666665544 5555554 4567887764332 2222 22233333332 788
Q ss_pred EEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEe
Q 003205 193 VEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (839)
Q Consensus 193 ~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~s 244 (839)
.+|..+.|+||.+|+...-. .+|..-|..|.| |.+.|.++..||+|+||+
T Consensus 372 lvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWd 426 (499)
T KOG0281|consen 372 LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWD 426 (499)
T ss_pred EEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEe
Confidence 99999999999999987432 566666877776 467999999999999996
No 102
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.92 E-value=1.1e-07 Score=97.83 Aligned_cols=200 Identities=12% Similarity=0.053 Sum_probs=144.7
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCC---eEEEEEeCC
Q 003205 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQ---TLICVVQDG 108 (839)
Q Consensus 32 ~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de---~Lv~v~~dG 108 (839)
+-....++.+.+|..+++.. .|+.+++|+.....+.++..|. +.|..+.|-+.. .|++++-|.
T Consensus 72 ~~PvL~v~WsddgskVf~g~------------~Dk~~k~wDL~S~Q~~~v~~Hd--~pvkt~~wv~~~~~~cl~TGSWDK 137 (347)
T KOG0647|consen 72 DGPVLDVCWSDDGSKVFSGG------------CDKQAKLWDLASGQVSQVAAHD--APVKTCHWVPGMNYQCLVTGSWDK 137 (347)
T ss_pred CCCeEEEEEccCCceEEeec------------cCCceEEEEccCCCeeeeeecc--cceeEEEEecCCCcceeEeccccc
Confidence 34556888999998888875 6999999998777899999999 999999999754 379999999
Q ss_pred eEEEEeCCCCc--cccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCC
Q 003205 109 TVYRYNIHAEL--IEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPK 186 (839)
Q Consensus 109 tv~l~~~~G~~--~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~ 186 (839)
|++.||+.... .+..+ .++|..+-+-..=.|+.|++.++..++--+.|....-...++.-..+|-++..
T Consensus 138 TlKfWD~R~~~pv~t~~L-------PeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~-- 208 (347)
T KOG0647|consen 138 TLKFWDTRSSNPVATLQL-------PERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ-- 208 (347)
T ss_pred ceeecccCCCCeeeeeec-------cceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe--
Confidence 99999875333 23333 45677666655667788888887544422233322222223444566665544
Q ss_pred CCCCCcEEEEEEeCCeEEEEecCCc--c-----ccc---------CCCceEEEECCCCcEEEEeecCCeEEEEecCCCCc
Q 003205 187 YTMTGSVEVLIGTDAGILMLDEDGV--Q-----KVD---------DTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSP 250 (839)
Q Consensus 187 ~S~~~~~~v~~s~d~tv~l~~~~~~--~-----~~~---------~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~ 250 (839)
|++..++.+.+|.+-+-..+.. . +-| .-.|+.|+|.|....+|+++.||+.-.|+.|-...
T Consensus 209 ---d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~k 285 (347)
T KOG0647|consen 209 ---DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTK 285 (347)
T ss_pred ---cCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhh
Confidence 6677799999998877655532 1 111 23488999999999999999999999999998888
Q ss_pred cccccCC
Q 003205 251 VIDESCE 257 (839)
Q Consensus 251 l~e~~~~ 257 (839)
|.+..++
T Consensus 286 Lk~s~~~ 292 (347)
T KOG0647|consen 286 LKTSETH 292 (347)
T ss_pred hhccCcC
Confidence 8766555
No 103
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=98.92 E-value=3.3e-08 Score=114.92 Aligned_cols=246 Identities=16% Similarity=0.119 Sum_probs=189.5
Q ss_pred hccCchHHHHHHHHHcCCchHHHHHHHHHHhhCChhHHHHHHhcChhHHHHHHHHHH-hcCHHHHHHHHHhcCChhHHHH
Q 003205 540 LSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYAR-CYKHEFLKDFFLSTGQLQEVAF 618 (839)
Q Consensus 540 l~~~~~~~AL~~Ai~S~D~dLI~~vll~l~~~l~~~~f~~~l~~~p~a~~~~~~y~~-~~~~~~L~~~~~~~~~~~e~a~ 618 (839)
-.|.+--..|+.|+..+|++.|..++.|+++++....|+..|..+|.|..+|+.|.+ .++.+.+.+.+...++..++++
T Consensus 158 ~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e~~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el 237 (511)
T PF09787_consen 158 RSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKEIERQELEERPKALRHYIEYLRESGELQEQLELLKAEGESEEAEL 237 (511)
T ss_pred hhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 445555567899999999999999999999999999999999999999999999996 5788999999999999999999
Q ss_pred HHHH--HHHhcCCCCCCCCCCCCcchHHHHHHH-HHh-hhhh------ccccchHHHHHHHHHHHHHHHH---HHHh---
Q 003205 619 LLWK--ESWELGKNPMASNGSALHGPRIKRIEK-AHS-LFSE------TKEHTFESKAAEEHAKLLRIQH---ELEV--- 682 (839)
Q Consensus 619 ~~l~--~~~~~~~~~~~~~~~~~~~~k~~~L~~-a~~-~~~~------~~~~~f~~~~~~~~~~Ll~~Q~---~Le~--- 682 (839)
..++ ......+.+ .++..|+. +.. .+.. -.....+...+++++.+++.|. ..+.
T Consensus 238 ~~Yk~kA~~iLq~kE----------klI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~ 307 (511)
T PF09787_consen 238 QQYKQKAQRILQSKE----------KLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDL 307 (511)
T ss_pred HHHHHHHHHHhcCHH----------HHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888 333333443 56677777 333 2322 1222357788999999999988 2222
Q ss_pred --hhcc-----------ccccCCCHHHH-----HHHHHHc------CCcchHHhHHhHcCCChHHHHHHHHHHHHhCCCh
Q 003205 683 --STKQ-----------AIFVDSSISDT-----IRTCIVL------GNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDW 738 (839)
Q Consensus 683 --~~~~-----------~~f~~~Sl~~t-----i~~l~~~------~~~k~a~~l~k~fkvsdkr~~~~kl~ala~~~~w 738 (839)
.... ....+.+...| +++|... +..+.+..++..||.+|+++-|..+.+.++...|
T Consensus 308 e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~ 387 (511)
T PF09787_consen 308 EAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARASSSSW 387 (511)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 1110 01334555666 5555442 2345688899999999999999999999999999
Q ss_pred hHHHHhhcc------------------C-CCCCCchHHHHHHH---hcCCHHH-HHHhhccCCCHHHHHHHHHHcCCHHH
Q 003205 739 DALERFSKE------------------K-RPPIGYRPFVEACV---DADEKGE-ALKYIPKLVDPRERAEAYARIGMAKE 795 (839)
Q Consensus 739 ~~L~~f~~~------------------K-KspIgyepfv~~~~---~~~~~~e-a~~yI~~i~d~~~r~~~~~~~~~~~~ 795 (839)
.++|+..++ | ..||++|-....+. .+.++.. ...|+.-.+|.+.|+..+.+.+++.-
T Consensus 388 ~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~~~~~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~d~ 467 (511)
T PF09787_consen 388 NELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLKEEASNNRPSSILMKYSNSEDDAESRVPLLMKDSPHDI 467 (511)
T ss_pred HhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHhhccCCCCchhhHhhccCCCchhhhhhhhccCCCccc
Confidence 999988743 2 36999999999998 6666666 47899999999999999999998866
No 104
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.90 E-value=3.6e-08 Score=113.60 Aligned_cols=169 Identities=14% Similarity=0.093 Sum_probs=109.0
Q ss_pred EEeeccccccccCC--CCCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC------------------
Q 003205 16 RYYRKPELYQMRWK--HIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG------------------ 75 (839)
Q Consensus 16 ~~yr~~e~y~m~w~--~~~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G------------------ 75 (839)
.+|....++-++|. ..+-..+..-|||+|..+|+++ .|+.||||.--+
T Consensus 249 ~~kelsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaG------------eD~virVWkVie~e~~~~~~~~~~~~~~~~ 316 (712)
T KOG0283|consen 249 SPKELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAG------------EDGVIRVWKVIESERMRVAEGDSSCMYFEY 316 (712)
T ss_pred CcccceeeEEeeccccccCCcEEEEEeCCCCceeeecC------------CCceEEEEEEeccchhcccccccchhhhhh
Confidence 34444455555553 2345678899999999999997 578888885333
Q ss_pred -------------------------------------------CceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEE
Q 003205 76 -------------------------------------------VLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYR 112 (839)
Q Consensus 76 -------------------------------------------~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l 112 (839)
+++..+.+|. +.|.++.||.++-|++.+-|.||||
T Consensus 317 ~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt--~DILDlSWSKn~fLLSSSMDKTVRL 394 (712)
T KOG0283|consen 317 NANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHT--ADILDLSWSKNNFLLSSSMDKTVRL 394 (712)
T ss_pred hhccccCccccccccccccccccccccCCccccCCCccccccccchhhhhccc--hhheecccccCCeeEeccccccEEe
Confidence 3444566777 8999999999999999999999999
Q ss_pred EeCCCCc-cccCCCCCccccccCeEEEEEEC-CeEEEEecCCe-EEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCC
Q 003205 113 YNIHAEL-IEPNASMGKECFEENVVECVFWG-NGVVCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTM 189 (839)
Q Consensus 113 ~~~~G~~-~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~ 189 (839)
|++.-+. +..+ .| .+=|.++.|.| |--.+++++-+ -..+|++.+.++.--.+ +..-++ ...|+|
T Consensus 395 Wh~~~~~CL~~F-~H-----ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D--l~~lIT-----Avcy~P 461 (712)
T KOG0283|consen 395 WHPGRKECLKVF-SH-----NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND--LRDLIT-----AVCYSP 461 (712)
T ss_pred ecCCCcceeeEE-ec-----CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh--hhhhhe-----eEEecc
Confidence 9876443 3333 35 56688899998 66677777543 23556654333222111 000011 113566
Q ss_pred CCcEEEEEEeCCeEEEEecCCc
Q 003205 190 TGSVEVLIGTDAGILMLDEDGV 211 (839)
Q Consensus 190 ~~~~~v~~s~d~tv~l~~~~~~ 211 (839)
||+..|+.+.+|..+.++..|+
T Consensus 462 dGk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 462 DGKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred CCceEEEEEeccEEEEEEccCC
Confidence 7776666666666555555544
No 105
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.89 E-value=1.8e-07 Score=100.63 Aligned_cols=209 Identities=13% Similarity=0.129 Sum_probs=127.3
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC-CCceeEEEecCCCCCeEEEeecCCCeEE-EEEeCC-eEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISETVWKNPGGRLIGMSWSEDQTLI-CVVQDG-TVY 111 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G~ll~ti~~~~~~~~I~~~~fs~de~Lv-~v~~dG-tv~ 111 (839)
...++++|+|+.+++.. ..++.|++|+.. ++.+.++... ..+.++.|+|++.++ +...++ .+.
T Consensus 75 ~~~~~~~~~g~~l~~~~-----------~~~~~l~~~d~~~~~~~~~~~~~---~~~~~~~~~~dg~~l~~~~~~~~~~~ 140 (300)
T TIGR03866 75 PELFALHPNGKILYIAN-----------EDDNLVTVIDIETRKVLAEIPVG---VEPEGMAVSPDGKIVVNTSETTNMAH 140 (300)
T ss_pred ccEEEECCCCCEEEEEc-----------CCCCeEEEEECCCCeEEeEeeCC---CCcceEEECCCCCEEEEEecCCCeEE
Confidence 34678899998777664 146899999975 4667767532 356889999999864 555444 466
Q ss_pred EEeCC-CCccccCCCCCccccccCeEEEEEECCeEEE-Eec--CCeEEEEecCCCce-EEEcCCCCCCCCCceEEEeCCC
Q 003205 112 RYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVC-VTE--ANRYFCMADFATMK-VCELARPEVEELPHCVAVIEPK 186 (839)
Q Consensus 112 l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~-~t~--~~~~~~v~~~~~~~-~~~l~~~~~~~~~~~w~vi~~~ 186 (839)
.|+.. ++...... . ...+..+.++++|..+ ++. ++.+ .+++..+.. ...+.....+..+.........
T Consensus 141 ~~d~~~~~~~~~~~-~-----~~~~~~~~~s~dg~~l~~~~~~~~~v-~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 213 (300)
T TIGR03866 141 FIDTKTYEIVDNVL-V-----DQRPRFAEFTADGKELWVSSEIGGTV-SVIDVATRKVIKKITFEIPGVHPEAVQPVGIK 213 (300)
T ss_pred EEeCCCCeEEEEEE-c-----CCCccEEEECCCCCEEEEEcCCCCEE-EEEEcCcceeeeeeeecccccccccCCccceE
Confidence 67764 33322111 1 1234557788888655 443 3444 445554332 2222110000011111111224
Q ss_pred CCCCCcEEEEE-EeCCeEEEEecCCcc----cccCCCceEEEECCCCcEEEEee-cCCeEEEEecCCCCccccccCCCCC
Q 003205 187 YTMTGSVEVLI-GTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFT-HDGRLVVNNTNFSSPVIDESCESAL 260 (839)
Q Consensus 187 ~S~~~~~~v~~-s~d~tv~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~~-~~g~i~i~ssd~~~~l~e~~~~~~~ 260 (839)
|||+|...+.+ +.++++.+||..+.. ....+.+..++|||+|++|++.+ .+|+|.||+.+-.+.+.++..+ .
T Consensus 214 ~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~--~ 291 (300)
T TIGR03866 214 LTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG--R 291 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc--c
Confidence 67799976544 447789999987543 22345788999999999998764 5899999998867777666554 3
Q ss_pred CCCcee
Q 003205 261 PPEQIA 266 (839)
Q Consensus 261 ~p~~~~ 266 (839)
.|.+++
T Consensus 292 ~~~~~~ 297 (300)
T TIGR03866 292 LPWGVV 297 (300)
T ss_pred ccceeE
Confidence 565554
No 106
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.89 E-value=5.2e-08 Score=112.29 Aligned_cols=222 Identities=14% Similarity=0.128 Sum_probs=147.3
Q ss_pred EE-ecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeCCC--------------------------------Ccc-c----
Q 003205 81 TV-WKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHA--------------------------------ELI-E---- 121 (839)
Q Consensus 81 i~-~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~G--------------------------------~~~-~---- 121 (839)
|. .|. |.|++|.||+||+ |+++.+||.||||...+ +.. .
T Consensus 262 ~~~ah~--gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 262 ISNAHK--GAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred cccccC--CcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 45 566 9999999999999 58999999999996543 000 0
Q ss_pred ------------------------cCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCce-EEEcCCCCCCC
Q 003205 122 ------------------------PNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMK-VCELARPEVEE 175 (839)
Q Consensus 122 ------------------------~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~-~~~l~~~~~~~ 175 (839)
-..|| ..+|+++..+.+++. +++++ +-+.+|+..... +..|..+ .
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GH-----t~DILDlSWSKn~fL-LSSSMDKTVRLWh~~~~~CL~~F~Hn---d 410 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGH-----TADILDLSWSKNNFL-LSSSMDKTVRLWHPGRKECLKVFSHN---D 410 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhcc-----chhheecccccCCee-EeccccccEEeecCCCcceeeEEecC---C
Confidence 01123 566778876667754 55544 467788776332 2333321 1
Q ss_pred CCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcc
Q 003205 176 LPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPV 251 (839)
Q Consensus 176 ~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l 251 (839)
-.+|-+..|. |....+..+-|+.+.+|+..+++ ..-..-|++++++|||+....++-+|...++++.--+..
T Consensus 411 fVTcVaFnPv----DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 411 FVTCVAFNPV----DDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred eeEEEEeccc----CCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEE
Confidence 2556555555 78889999999999999999886 222366999999999999999999999999986522222
Q ss_pred ccccCCC-------CCCCCceeee-cCc-eEEEEecC-E------------EEEEcCCCC----ceEeccCCCeEEeecC
Q 003205 252 IDESCES-------ALPPEQIAWC-GMD-SVLLYWND-M------------LVMVAPQAE----PVQYFYDEPLVLIPEC 305 (839)
Q Consensus 252 ~e~~~~~-------~~~p~~~~Wc-G~d-~vv~~~~~-~------------l~lig~~~~----~v~f~~~~~~~l~~E~ 305 (839)
..+..+. -.....++.+ |+- -|++.-+| . .++-|..+. .-+|.-|+..++++..
T Consensus 487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se 566 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE 566 (712)
T ss_pred EeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec
Confidence 2222110 1134566666 322 24444444 2 245555443 5778888888888887
Q ss_pred C-ceEEEccCcce
Q 003205 306 D-GVRILSNSSME 317 (839)
Q Consensus 306 D-GvRIit~~~~~ 317 (839)
| +|-||..++..
T Consensus 567 Ds~VYiW~~~~~~ 579 (712)
T KOG0283|consen 567 DSWVYIWKNDSFN 579 (712)
T ss_pred CceEEEEeCCCCc
Confidence 7 59999975444
No 107
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=1.4e-07 Score=108.15 Aligned_cols=204 Identities=16% Similarity=0.125 Sum_probs=124.2
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEE-EeCCeEEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICV-VQDGTVYR 112 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v-~~dGtv~l 112 (839)
....++||+|..||..+.. ..++.|.+|+..+.....+.... +......|||||+ |+++ ..+|...+
T Consensus 206 v~~p~wSPDG~~la~~s~~---------~~~~~i~i~dl~tg~~~~l~~~~--g~~~~~~wSPDG~~La~~~~~~g~~~I 274 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFE---------NKKSQLVVHDLRSGARKVVASFR--GHNGAPAFSPDGSRLAFASSKDGVLNI 274 (429)
T ss_pred cccceEcCCCCEEEEEEec---------CCCcEEEEEeCCCCceEEEecCC--CccCceeECCCCCEEEEEEecCCcEEE
Confidence 4578999999999998742 24678999997654433333222 4455789999997 5554 46888777
Q ss_pred E--eCCCCccccCCCCCccccccCeEEEEEECCeEEE-EecC--C--eEEEEecCCCceEEEcCCCCCCCCCceEEEeCC
Q 003205 113 Y--NIHAELIEPNASMGKECFEENVVECVFWGNGVVC-VTEA--N--RYFCMADFATMKVCELARPEVEELPHCVAVIEP 185 (839)
Q Consensus 113 ~--~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~-~t~~--~--~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~ 185 (839)
| ++.|...+...++ ...+....++++|..+ .+++ + ++|.++. .+.....+. ... ..+
T Consensus 275 y~~d~~~~~~~~lt~~-----~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~-~~~~~~~l~-------~~~---~~~ 338 (429)
T PRK01742 275 YVMGANGGTPSQLTSG-----AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA-SGGGASLVG-------GRG---YSA 338 (429)
T ss_pred EEEECCCCCeEeeccC-----CCCcCCEEECCCCCEEEEEECCCCCceEEEEEC-CCCCeEEec-------CCC---CCc
Confidence 7 6654432222223 2345667888988643 3332 2 4565543 222222321 111 235
Q ss_pred CCCCCCcEEEEEEeCCeEEEEecCCcc--cc-cCCCceEEEECCCCcEEEEeecCCeEEEE---ecCCCCccccccCCCC
Q 003205 186 KYTMTGSVEVLIGTDAGILMLDEDGVQ--KV-DDTLSQKMAVSPNGNFVACFTHDGRLVVN---NTNFSSPVIDESCESA 259 (839)
Q Consensus 186 ~~S~~~~~~v~~s~d~tv~l~~~~~~~--~~-~~~~i~~ia~Spng~~iA~~~~~g~i~i~---ssd~~~~l~e~~~~~~ 259 (839)
.+||||+.+++.+.++ ++.||..+.. .. ........+|||||++|+..+.+|...+| +.+ ++...++..+ .
T Consensus 339 ~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~-G~~~~~l~~~-~ 415 (429)
T PRK01742 339 QISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSAD-GRFKARLPGS-D 415 (429)
T ss_pred cCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCceEEccCC-C
Confidence 7899999998887755 6678876432 11 12234578899999999999988865444 334 4444445433 2
Q ss_pred CCCCceeee
Q 003205 260 LPPEQIAWC 268 (839)
Q Consensus 260 ~~p~~~~Wc 268 (839)
......+|.
T Consensus 416 g~~~~p~ws 424 (429)
T PRK01742 416 GQVKFPAWS 424 (429)
T ss_pred CCCCCcccC
Confidence 344556665
No 108
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=5.6e-07 Score=101.42 Aligned_cols=199 Identities=14% Similarity=0.148 Sum_probs=142.4
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeE--EEecCCCCCeEEEeecCCCeEEEEEeCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISE--TVWKNPGGRLIGMSWSEDQTLICVVQDGTVY 111 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~t--i~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~ 111 (839)
..-.+|+|...+.+|+.| .+|+|.|||..-..... |.++. .+.|-+++|++.++|.++.-+|+|-
T Consensus 27 ~I~slA~s~kS~~lAvsR------------t~g~IEiwN~~~~w~~~~vi~g~~-drsIE~L~W~e~~RLFS~g~sg~i~ 93 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSR------------TDGNIEIWNLSNNWFLEPVIHGPE-DRSIESLAWAEGGRLFSSGLSGSIT 93 (691)
T ss_pred ceEEEEEeccCCceeeec------------cCCcEEEEccCCCceeeEEEecCC-CCceeeEEEccCCeEEeecCCceEE
Confidence 344789999999999998 68999999987765554 55544 4689999999999999999999999
Q ss_pred EEeCC-CCccccCCCCCccccccCeEEEEEECCeEEEEec--CCeEEEEecCCCceEEEcCCCCCC-CCCceEEEeCCCC
Q 003205 112 RYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTE--ANRYFCMADFATMKVCELARPEVE-ELPHCVAVIEPKY 187 (839)
Q Consensus 112 l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~--~~~~~~v~~~~~~~~~~l~~~~~~-~~~~~w~vi~~~~ 187 (839)
-||++ |+... .+.. .-..||.+.+.|.+-.++-+ +|.++.+.. +|....+.. .++ .+.+ +++-.|
T Consensus 94 EwDl~~lk~~~-~~d~----~gg~IWsiai~p~~~~l~IgcddGvl~~~s~--~p~~I~~~r-~l~rq~sR---vLslsw 162 (691)
T KOG2048|consen 94 EWDLHTLKQKY-NIDS----NGGAIWSIAINPENTILAIGCDDGVLYDFSI--GPDKITYKR-SLMRQKSR---VLSLSW 162 (691)
T ss_pred EEecccCceeE-EecC----CCcceeEEEeCCccceEEeecCCceEEEEec--CCceEEEEe-ecccccce---EEEEEe
Confidence 99964 55422 1111 14568999999866666554 565444432 344444332 222 2234 344477
Q ss_pred CCCCcEEEEEEeCCeEEEEecCCccc----------c---cCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccc
Q 003205 188 TMTGSVEVLIGTDAGILMLDEDGVQK----------V---DDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDE 254 (839)
Q Consensus 188 S~~~~~~v~~s~d~tv~l~~~~~~~~----------~---~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~ 254 (839)
+|++..++..+.||.|.+||...++. . ...-|+++.|=.+| .||++...|++.+|+++|+..+..|
T Consensus 163 ~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~ 241 (691)
T KOG2048|consen 163 NPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSH 241 (691)
T ss_pred cCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhh
Confidence 88999999999999999999886641 1 12226677666665 8899999999999999999888666
Q ss_pred cCC
Q 003205 255 SCE 257 (839)
Q Consensus 255 ~~~ 257 (839)
..+
T Consensus 242 ~~h 244 (691)
T KOG2048|consen 242 SCH 244 (691)
T ss_pred hhh
Confidence 554
No 109
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=1.9e-07 Score=101.16 Aligned_cols=193 Identities=15% Similarity=0.148 Sum_probs=132.2
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEe
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYN 114 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~ 114 (839)
.++.+|+|-.++.. +..+.|.+|. ++|.+|..+..|. -.|.++-||.||. +++++.||-|++|.
T Consensus 86 al~s~n~G~~l~ag------------~i~g~lYlWelssG~LL~v~~aHY--Q~ITcL~fs~dgs~iiTgskDg~V~vW~ 151 (476)
T KOG0646|consen 86 ALASSNLGYFLLAG------------TISGNLYLWELSSGILLNVLSAHY--QSITCLKFSDDGSHIITGSKDGAVLVWL 151 (476)
T ss_pred eeecCCCceEEEee------------cccCcEEEEEeccccHHHHHHhhc--cceeEEEEeCCCcEEEecCCCccEEEEE
Confidence 45555555555443 2689999999 7999999999999 8999999999987 68999999999995
Q ss_pred CC---CC-------ccccCCCCCccccccCeEEEEEECCe--EEEEecC-CeEEEEecCCCceEEEcCCCCCCCCCceEE
Q 003205 115 IH---AE-------LIEPNASMGKECFEENVVECVFWGNG--VVCVTEA-NRYFCMADFATMKVCELARPEVEELPHCVA 181 (839)
Q Consensus 115 ~~---G~-------~~~~~~g~~~~~~~~~V~~~~~~~~G--~v~~t~~-~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~ 181 (839)
+. -. ....+-+| .-.|.+..+...| -.+.|.+ -+...+|++.... .|........+++.+
T Consensus 152 l~~lv~a~~~~~~~p~~~f~~H-----tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~--LLlti~fp~si~av~ 224 (476)
T KOG0646|consen 152 LTDLVSADNDHSVKPLHIFSDH-----TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV--LLLTITFPSSIKAVA 224 (476)
T ss_pred EEeecccccCCCccceeeeccC-----cceeEEEEecCCCccceEEEecCCceEEEEEeccce--eeEEEecCCcceeEE
Confidence 32 11 12223345 4457777775533 2344444 4577788876432 232222224556553
Q ss_pred EeCCCCCCCCcEEEEEEeCCeEEEEecCCcc---------------------cccCC--CceEEEECCCCcEEEEeecCC
Q 003205 182 VIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---------------------KVDDT--LSQKMAVSPNGNFVACFTHDG 238 (839)
Q Consensus 182 vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~---------------------~~~~~--~i~~ia~Spng~~iA~~~~~g 238 (839)
++| -+......+.+|.|++.+..+.. .++.+ +|+.+++|.||..++++..||
T Consensus 225 -lDp----ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg 299 (476)
T KOG0646|consen 225 -LDP----AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDG 299 (476)
T ss_pred -Ecc----cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCC
Confidence 454 44444445558888776544211 25555 899999999999999999999
Q ss_pred eEEEEecCCCCcccccc
Q 003205 239 RLVVNNTNFSSPVIDES 255 (839)
Q Consensus 239 ~i~i~ssd~~~~l~e~~ 255 (839)
++.||+..-.++++...
T Consensus 300 ~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 300 KVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred CEEEEecchHHHHHHHh
Confidence 99999987777776654
No 110
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.86 E-value=1.4e-07 Score=97.54 Aligned_cols=193 Identities=11% Similarity=0.056 Sum_probs=141.3
Q ss_pred cCCceEEEEcCCCCceeEEEecCCCCCeEEEeecC-CCeEEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEE
Q 003205 63 SALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSE-DQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFW 141 (839)
Q Consensus 63 ~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~-de~Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~ 141 (839)
..|+.|+.|+.++..-.+|.-|. +.|.+|.+++ .+.+++++-|++|++||..++........ ...|.+..+.
T Consensus 72 ~~dg~vr~~Dln~~~~~~igth~--~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-----~kkVy~~~v~ 144 (323)
T KOG1036|consen 72 GLDGQVRRYDLNTGNEDQIGTHD--EGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-----GKKVYCMDVS 144 (323)
T ss_pred ccCceEEEEEecCCcceeeccCC--CceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-----CceEEEEecc
Confidence 47999999999999999998888 9999999998 45689999999999999887654434333 4478888888
Q ss_pred CCeEEEEecCCeE--EEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEE--EecCCc-c----
Q 003205 142 GNGVVCVTEANRY--FCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILM--LDEDGV-Q---- 212 (839)
Q Consensus 142 ~~G~v~~t~~~~~--~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l--~~~~~~-~---- 212 (839)
++-+++.|.+.++ |-+.+.+.+. +.-+.++.-..+|-+.+| ++.--|..+.||.|.+ +|.+.. +
T Consensus 145 g~~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~p-----n~eGy~~sSieGRVavE~~d~s~~~~skky 217 (323)
T KOG1036|consen 145 GNRLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVP-----NGEGYVVSSIEGRVAVEYFDDSEEAQSKKY 217 (323)
T ss_pred CCEEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEec-----CCCceEEEeecceEEEEccCCchHHhhhce
Confidence 8999888887764 5555655443 111223434566666655 6666777888998877 343311 1
Q ss_pred -----------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecC
Q 003205 213 -----------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGM 270 (839)
Q Consensus 213 -----------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~ 270 (839)
....-||++|+|+|-.+.+|+++.||.+-+|+..-++.|+++... +.....+++|-+
T Consensus 218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~-~~SI~slsfs~d 285 (323)
T KOG1036|consen 218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY-ETSISSLSFSMD 285 (323)
T ss_pred eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC-CCceEEEEeccC
Confidence 122357999999999999999999999999998777888887554 233556666643
No 111
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=8e-08 Score=96.15 Aligned_cols=194 Identities=18% Similarity=0.163 Sum_probs=132.8
Q ss_pred CCCCEEEEcC--CCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeE---EEecCCCCCeEEEeecCCCe---EEEE
Q 003205 33 LSRNKVACAP--FGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISE---TVWKNPGGRLIGMSWSEDQT---LICV 104 (839)
Q Consensus 33 l~~~~va~sp--~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~t---i~~~~~~~~I~~~~fs~de~---Lv~v 104 (839)
-..+.|+.+. +|+.+|..+ .|+.|-||...|..-++ ...|+ +.|.+++|-|.|. |+|+
T Consensus 57 GPVwqv~wahPk~G~iLAScs------------YDgkVIiWke~~g~w~k~~e~~~h~--~SVNsV~wapheygl~Laca 122 (299)
T KOG1332|consen 57 GPVWKVAWAHPKFGTILASCS------------YDGKVIIWKEENGRWTKAYEHAAHS--ASVNSVAWAPHEYGLLLACA 122 (299)
T ss_pred CCeeEEeecccccCcEeeEee------------cCceEEEEecCCCchhhhhhhhhhc--ccceeecccccccceEEEEe
Confidence 3556888887 999999986 89999999976654333 44466 7899999999874 6899
Q ss_pred EeCCeEEEEeCCCC--cc--ccCCCCCccccccCeEEEEEECC---e-----------EEEEecCC-eEEEEecCCCceE
Q 003205 105 VQDGTVYRYNIHAE--LI--EPNASMGKECFEENVVECVFWGN---G-----------VVCVTEAN-RYFCMADFATMKV 165 (839)
Q Consensus 105 ~~dGtv~l~~~~G~--~~--~~~~g~~~~~~~~~V~~~~~~~~---G-----------~v~~t~~~-~~~~v~~~~~~~~ 165 (839)
++||+|.+.+..++ .. +...-| +.+|..+.-.|. | .-++++.. +.+.||.+++..
T Consensus 123 sSDG~vsvl~~~~~g~w~t~ki~~aH-----~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~- 196 (299)
T KOG1332|consen 123 SSDGKVSVLTYDSSGGWTTSKIVFAH-----EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS- 196 (299)
T ss_pred eCCCcEEEEEEcCCCCccchhhhhcc-----ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc-
Confidence 99999999976544 32 223345 667887776653 5 22445443 356666665421
Q ss_pred EEcCCCCCCCCCceE--EE-eCCCCCCCCcEEEEEEeCCeEEEEecCCcc--------cccCCCceEEEECCCCcEEEEe
Q 003205 166 CELARPEVEELPHCV--AV-IEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--------KVDDTLSQKMAVSPNGNFVACF 234 (839)
Q Consensus 166 ~~l~~~~~~~~~~~w--~v-i~~~~S~~~~~~v~~s~d~tv~l~~~~~~~--------~~~~~~i~~ia~Spng~~iA~~ 234 (839)
..+.. .+ .....| .| -.|....-..+++..+.|++|++|..+... ...+.++.++++|+.|.+||..
T Consensus 197 w~~e~-~l-~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs 274 (299)
T KOG1332|consen 197 WKLER-TL-EGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVS 274 (299)
T ss_pred hhhhh-hh-hhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEe
Confidence 11111 01 233344 11 123333445789999999999999877432 2346779999999999999999
Q ss_pred ecCCeEEEEecCCC
Q 003205 235 THDGRLVVNNTNFS 248 (839)
Q Consensus 235 ~~~g~i~i~ssd~~ 248 (839)
..|..+.+|.-+.+
T Consensus 275 ~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 275 GGDNKVTLWKENVD 288 (299)
T ss_pred cCCcEEEEEEeCCC
Confidence 99999999976644
No 112
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.85 E-value=1.6e-07 Score=107.62 Aligned_cols=207 Identities=14% Similarity=0.141 Sum_probs=127.1
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEE-EeCCe--E
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICV-VQDGT--V 110 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v-~~dGt--v 110 (839)
....++||+|..||..+.+ ..++.|.+|+..|.....+.-.. +......|||||+ |+.+ ..+|. +
T Consensus 201 ~~~p~wSPDG~~la~~s~~---------~g~~~i~i~dl~~G~~~~l~~~~--~~~~~~~~SPDG~~La~~~~~~g~~~I 269 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFE---------SGRSALVIQTLANGAVRQVASFP--RHNGAPAFSPDGSKLAFALSKTGSLNL 269 (429)
T ss_pred eeeeEEcCCCCEEEEEEec---------CCCcEEEEEECCCCCeEEccCCC--CCcCCeEECCCCCEEEEEEcCCCCcEE
Confidence 3478999999999988632 24678999997765444444333 5556789999997 5444 44664 7
Q ss_pred EEEeCCC-CccccCCCCCccccccCeEEEEEECCeEEE-EecC----CeEEEEecCCCceEEEcCCCCCCCCCceEEEeC
Q 003205 111 YRYNIHA-ELIEPNASMGKECFEENVVECVFWGNGVVC-VTEA----NRYFCMADFATMKVCELARPEVEELPHCVAVIE 184 (839)
Q Consensus 111 ~l~~~~G-~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~-~t~~----~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~ 184 (839)
++|++.+ +..+..-+ ...+....++|+|..+ .+++ .++|.++ .++....++... ... ...
T Consensus 270 ~~~d~~tg~~~~lt~~------~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d-~~~g~~~~lt~~----~~~---~~~ 335 (429)
T PRK03629 270 YVMDLASGQIRQVTDG------RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVN-INGGAPQRITWE----GSQ---NQD 335 (429)
T ss_pred EEEECCCCCEEEccCC------CCCcCceEECCCCCEEEEEeCCCCCceEEEEE-CCCCCeEEeecC----CCC---ccC
Confidence 7778764 44333222 2245667888888644 3332 2566554 343344444321 111 123
Q ss_pred CCCCCCCcEEEEEEeC---CeEEEEecCCcc--ccc-CCCceEEEECCCCcEEEEeecCCe---EEEEecCCCCcccccc
Q 003205 185 PKYTMTGSVEVLIGTD---AGILMLDEDGVQ--KVD-DTLSQKMAVSPNGNFVACFTHDGR---LVVNNTNFSSPVIDES 255 (839)
Q Consensus 185 ~~~S~~~~~~v~~s~d---~tv~l~~~~~~~--~~~-~~~i~~ia~Spng~~iA~~~~~g~---i~i~ssd~~~~l~e~~ 255 (839)
+.+||||+.+++.+.+ ..|++|+..+.. ... .......++||||+.|+..+.+|. +++++.| ++...++.
T Consensus 336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~ 414 (429)
T PRK03629 336 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLP 414 (429)
T ss_pred EEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECc
Confidence 5678899999988764 358889876543 222 222456889999999999998764 7788766 33333333
Q ss_pred CCCCCCCCceeee
Q 003205 256 CESALPPEQIAWC 268 (839)
Q Consensus 256 ~~~~~~p~~~~Wc 268 (839)
.+ .......+|.
T Consensus 415 ~~-~~~~~~p~Ws 426 (429)
T PRK03629 415 AT-DGQVKFPAWS 426 (429)
T ss_pred cC-CCCcCCcccC
Confidence 32 2344556664
No 113
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.84 E-value=1.6e-08 Score=105.99 Aligned_cols=171 Identities=14% Similarity=0.200 Sum_probs=127.1
Q ss_pred CceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCe--EEEEEeCCeEEEEeC-CCCcc-ccCCCCCccccccCeEEEE
Q 003205 65 LRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT--LICVVQDGTVYRYNI-HAELI-EPNASMGKECFEENVVECV 139 (839)
Q Consensus 65 ~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~--Lv~v~~dGtv~l~~~-~G~~~-~~~~g~~~~~~~~~V~~~~ 139 (839)
...|.||+. .-++++++.|-. +.|.++.|+|.|. |++..+|+.+.+||+ .+..+ +..++. .-..++
T Consensus 166 Ge~i~IWD~~R~~Pv~smswG~--Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m-------RTN~Is 236 (433)
T KOG0268|consen 166 GEQIDIWDEQRDNPVSSMSWGA--DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM-------RTNTIC 236 (433)
T ss_pred CceeeecccccCCccceeecCC--CceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec-------ccccee
Confidence 456999995 567999999988 9999999999987 568889999999986 45543 223322 223456
Q ss_pred EECCeEEEEecCC--eEEEEecCCCceEEEcCCCCCC-CCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----
Q 003205 140 FWGNGVVCVTEAN--RYFCMADFATMKVCELARPEVE-ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---- 212 (839)
Q Consensus 140 ~~~~G~v~~t~~~--~~~~v~~~~~~~~~~l~~~~~~-~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~---- 212 (839)
+.|+++.+.+++. ++|..+ .+.|.. +++ ...+.-+|++.+|||.|+-.|.++.|.+|.++..++..
T Consensus 237 wnPeafnF~~a~ED~nlY~~D------mR~l~~-p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdi 309 (433)
T KOG0268|consen 237 WNPEAFNFVAANEDHNLYTYD------MRNLSR-PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI 309 (433)
T ss_pred cCccccceeeccccccceehh------hhhhcc-cchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhh
Confidence 6778888777654 455432 112222 122 33455578888999999999999999999999877543
Q ss_pred --cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcc
Q 003205 213 --KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPV 251 (839)
Q Consensus 213 --~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l 251 (839)
.--...|..+.+|-|.++|.++++||++.+|...-++.+
T Consensus 310 YhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 310 YHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred hhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 223467999999999999999999999999987655554
No 114
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.84 E-value=1.1e-07 Score=103.04 Aligned_cols=242 Identities=14% Similarity=0.091 Sum_probs=161.1
Q ss_pred cCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEE-eCCeEEEEeC-CCCccccCCCCCccccccCeEEEEE
Q 003205 63 SALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVV-QDGTVYRYNI-HAELIEPNASMGKECFEENVVECVF 140 (839)
Q Consensus 63 ~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~-~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~ 140 (839)
..+|.|++|.-.=+..-. ...-.+|+|.++.=+|+|.+++++ ..|.+++|.+ .|+++.+..+| =..|...+|
T Consensus 58 ~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH-----YQ~ITcL~f 131 (476)
T KOG0646|consen 58 LKRPLLHVWEILKKDQVV-QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAH-----YQSITCLKF 131 (476)
T ss_pred ccCccccccccCchhhhh-hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhh-----ccceeEEEE
Confidence 468899999854332221 111124899999999999987777 9999999985 79998888888 667899999
Q ss_pred ECCeEEEEecCCe----EEEEecCCCceEEEcCCCCCC-CCCceEEE--eCCCCCCCCcEEEEEEeCCeEEEEecCCcc-
Q 003205 141 WGNGVVCVTEANR----YFCMADFATMKVCELARPEVE-ELPHCVAV--IEPKYTMTGSVEVLIGTDAGILMLDEDGVQ- 212 (839)
Q Consensus 141 ~~~G~v~~t~~~~----~~~v~~~~~~~~~~l~~~~~~-~~~~~w~v--i~~~~S~~~~~~v~~s~d~tv~l~~~~~~~- 212 (839)
++||-.++|++.+ +|.+.++-++.... ...++- -..|...| +...+.+....+.+++.|+|+++||...-.
T Consensus 132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~-~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L 210 (476)
T KOG0646|consen 132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDH-SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL 210 (476)
T ss_pred eCCCcEEEecCCCccEEEEEEEeecccccCC-CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee
Confidence 9999999998764 34443332221110 000000 00111222 222344455678889999999999988543
Q ss_pred ---cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCC
Q 003205 213 ---KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAE 289 (839)
Q Consensus 213 ---~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~ 289 (839)
...+.++.+|+++|-+..+=.++.+|.|++..-- .. .+.+. ...+=... ..-...-.++|+.+.
T Consensus 211 Llti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~--~~----~~~~~-~v~~k~~~------~~~t~~~~~~Gh~~~ 277 (476)
T KOG0646|consen 211 LLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLF--KL----SGQSA-GVNQKGRH------EENTQINVLVGHENE 277 (476)
T ss_pred eEEEecCCcceeEEEcccccEEEecCCcceEEeeehh--cC----Ccccc-cccccccc------cccceeeeeccccCC
Confidence 4567889999999999999999999999886411 00 00000 00000000 000113467888772
Q ss_pred ----ceEeccCCCeEEeecCCc-eEEEccCcceeeeccch
Q 003205 290 ----PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPA 324 (839)
Q Consensus 290 ----~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~ 324 (839)
...++.|+...++++.|| |+||...+.+.|+++..
T Consensus 278 ~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~ 317 (476)
T KOG0646|consen 278 SAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT 317 (476)
T ss_pred cceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh
Confidence 566778999999999999 99999999999988764
No 115
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=5.9e-06 Score=98.52 Aligned_cols=210 Identities=10% Similarity=0.167 Sum_probs=142.6
Q ss_pred CCceEEEEcCCC-------CceeEEEecCCCCCeEEEeecCCCe--EEEEEeCCeEEEEeCCCCccccCCCCCccccccC
Q 003205 64 ALRKLRIFNSAG-------VLISETVWKNPGGRLIGMSWSEDQT--LICVVQDGTVYRYNIHAELIEPNASMGKECFEEN 134 (839)
Q Consensus 64 ~~~~I~iy~~~G-------~ll~ti~~~~~~~~I~~~~fs~de~--Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~ 134 (839)
.||.|-+||.+- .+|.+..-|. |.|.++.|++... |+++.+||.|.|||+.---..+..|... ....
T Consensus 88 edG~I~ly~p~~~~~~~~~~~la~~~~h~--G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~--~~~e 163 (1049)
T KOG0307|consen 88 EDGNIVLYDPASIIANASEEVLATKSKHT--GPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQA--PPSE 163 (1049)
T ss_pred cCCceEEecchhhccCcchHHHhhhcccC--CceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCC--Cccc
Confidence 589999999754 2577777788 9999999999654 6899999999999987422445554311 1455
Q ss_pred eEEEEEECCe--EEEEecCCe-EEEEecCCCc-eEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeC----CeEEEE
Q 003205 135 VVECVFWGNG--VVCVTEANR-YFCMADFATM-KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTD----AGILML 206 (839)
Q Consensus 135 V~~~~~~~~G--~v~~t~~~~-~~~v~~~~~~-~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d----~tv~l~ 206 (839)
|..+ -|+.. -++++.+.. ...||++... ....|.+.+ .-..|.++ .+.|++.+-++++.+ -.|.+|
T Consensus 164 I~~l-sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~---~~~~~S~l--~WhP~~aTql~~As~dd~~PviqlW 237 (1049)
T KOG0307|consen 164 IKCL-SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP---GRMHCSVL--AWHPDHATQLLVASGDDSAPVIQLW 237 (1049)
T ss_pred ceEe-ccchhhhHHhhccCCCCCceeccccCCCcccccccCC---Cccceeee--eeCCCCceeeeeecCCCCCceeEee
Confidence 5533 36533 234443332 4556776532 233344311 11235554 466688777766652 378999
Q ss_pred ecCCcc------cccCCCceEEEECCCC-cEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEE---EE
Q 003205 207 DEDGVQ------KVDDTLSQKMAVSPNG-NFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVL---LY 276 (839)
Q Consensus 207 ~~~~~~------~~~~~~i~~ia~Spng-~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv---~~ 276 (839)
|..... .+|...|.+|+.+|.+ .++++-+.|+++..|+..-++++.++.+. .....++.||..+--+ .+
T Consensus 238 DlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~-~nW~fdv~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 238 DLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ-GNWCFDVQWCPRNPSVMAAAS 316 (1049)
T ss_pred cccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC-CcceeeeeecCCCcchhhhhe
Confidence 976442 5788899999999988 67777788999999999989999999875 4578899999877622 25
Q ss_pred ecCEEEEE
Q 003205 277 WNDMLVMV 284 (839)
Q Consensus 277 ~~~~l~li 284 (839)
++..|-+.
T Consensus 317 fdgkI~I~ 324 (1049)
T KOG0307|consen 317 FDGKISIY 324 (1049)
T ss_pred eccceeee
Confidence 66654433
No 116
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.79 E-value=3.2e-07 Score=92.72 Aligned_cols=237 Identities=12% Similarity=0.136 Sum_probs=152.8
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCC-ceeEEEecCCCCCeEEEeecCC--CeEEEEEeCCeEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV-LISETVWKNPGGRLIGMSWSED--QTLICVVQDGTVY 111 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~-ll~ti~~~~~~~~I~~~~fs~d--e~Lv~v~~dGtv~ 111 (839)
.-.|+..-+|.-+|... .++++.+||..+- +..........+.|..+.|.|- ..+++++.|.+|+
T Consensus 23 v~Sv~wn~~g~~lasgs------------~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 23 VHSVAWNCDGTKLASGS------------FDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR 90 (313)
T ss_pred ceEEEEcccCceeeecc------------cCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence 34888999999888875 7899999998764 3333333321168999999984 4578999999999
Q ss_pred EEe-CCCCccccCCCCCccccccCeEEEEEECCeEEEEecCC--eEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCC
Q 003205 112 RYN-IHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN--RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYT 188 (839)
Q Consensus 112 l~~-~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~--~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S 188 (839)
+|+ ..|+.....-.. -+.+ .+..||+|..++.++. .+-.+...+......... +.-....+|.
T Consensus 91 ~wd~r~~k~~~~i~~~-----~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~------- 156 (313)
T KOG1407|consen 91 IWDIRSGKCTARIETK-----GENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWN------- 156 (313)
T ss_pred EEEeccCcEEEEeecc-----Ccce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeec-------
Confidence 997 567763221111 1223 3566787766666544 344443221111111000 0001223454
Q ss_pred CCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCC
Q 003205 189 MTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPE 263 (839)
Q Consensus 189 ~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~ 263 (839)
.++++.++-.-.|+|-+++--... ..|...-..|.|+|+|+++|+++.|-.+-+|+ .++.+|+-- ..
T Consensus 157 ~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD--~~ELiC~R~------is 228 (313)
T KOG1407|consen 157 NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWD--VDELICERC------IS 228 (313)
T ss_pred CCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccC--hhHhhhhee------ec
Confidence 266776666666888777654432 45666677899999999999999999999995 456666532 12
Q ss_pred ceeeecCceEEEEecCEEEEEcCCCCceEeccCCCeEEeecCCc-eEEEccCcceeeeccch
Q 003205 264 QIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPA 324 (839)
Q Consensus 264 ~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~ 324 (839)
.|.|= -..++|+||+..+.+...|- |-|=..+.++-+..||-
T Consensus 229 Rldwp-------------------VRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~ 271 (313)
T KOG1407|consen 229 RLDWP-------------------VRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC 271 (313)
T ss_pred cccCc-------------------eEEEEeccCcceeeccCccceEEeEecccCCeEEEeec
Confidence 23331 12688999999999888886 88877777887877763
No 117
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.77 E-value=4.8e-07 Score=104.02 Aligned_cols=188 Identities=12% Similarity=0.121 Sum_probs=121.6
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EE-EEEeCCe--E
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LI-CVVQDGT--V 110 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv-~v~~dGt--v 110 (839)
....++||+|..||..+.+ ..++.|.+|+..+.....+.... +.+....|||||+ |+ +.+.+|. +
T Consensus 204 v~~p~wSpDG~~lay~s~~---------~g~~~i~~~dl~~g~~~~l~~~~--g~~~~~~~SPDG~~la~~~~~~g~~~I 272 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYA---------NGRPRVYLLDLETGQRELVGNFP--GMTFAPRFSPDGRKVVMSLSQGGNTDI 272 (435)
T ss_pred eEeeEECCCCCEEEEEEec---------CCCCEEEEEECCCCcEEEeecCC--CcccCcEECCCCCEEEEEEecCCCceE
Confidence 3567889999999998743 24689999998776666666555 7788999999996 54 5556666 5
Q ss_pred EEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEE-ecC----CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCC
Q 003205 111 YRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCV-TEA----NRYFCMADFATMKVCELARPEVEELPHCVAVIEP 185 (839)
Q Consensus 111 ~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~-t~~----~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~ 185 (839)
++|++.+...+....+ ...+....++++|--++ +++ .++|.++ .++...+++.. . .. .+..|
T Consensus 273 y~~d~~~~~~~~Lt~~-----~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d-~~g~~~~~lt~----~-~~--~~~~~ 339 (435)
T PRK05137 273 YTMDLRSGTTTRLTDS-----PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMN-ADGSNPRRISF----G-GG--RYSTP 339 (435)
T ss_pred EEEECCCCceEEccCC-----CCccCceeEcCCCCEEEEEECCCCCCeEEEEE-CCCCCeEEeec----C-CC--cccCe
Confidence 5557765443222222 22234577888885433 322 2466554 45444555532 1 11 12345
Q ss_pred CCCCCCcEEEEEEeC---CeEEEEecCCcc---cccCCCceEEEECCCCcEEEEeecCC------eEEEEecC
Q 003205 186 KYTMTGSVEVLIGTD---AGILMLDEDGVQ---KVDDTLSQKMAVSPNGNFVACFTHDG------RLVVNNTN 246 (839)
Q Consensus 186 ~~S~~~~~~v~~s~d---~tv~l~~~~~~~---~~~~~~i~~ia~Spng~~iA~~~~~g------~i~i~ssd 246 (839)
.+||||+.+++.+.+ ..|++++.++.. ......+...++||||+.|++.+.++ .|++++.+
T Consensus 340 ~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 340 VWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred EECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 688899999988764 368888876543 11223467899999999999877542 47777654
No 118
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.77 E-value=3.7e-07 Score=104.86 Aligned_cols=206 Identities=16% Similarity=0.124 Sum_probs=126.0
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EE-EEEeCCe--EE
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LI-CVVQDGT--VY 111 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv-~v~~dGt--v~ 111 (839)
...++||+|..||..+.+ ...+.|.+|+.++.....+.-.. +......|||||+ ++ +.+.+|. ++
T Consensus 207 ~~p~wSpDg~~la~~s~~---------~~~~~l~~~dl~~g~~~~l~~~~--g~~~~~~~SpDG~~l~~~~s~~g~~~Iy 275 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFE---------RGRSAIYVQDLATGQRELVASFR--GINGAPSFSPDGRRLALTLSRDGNPEIY 275 (433)
T ss_pred ccccCCCCCCEEEEEecC---------CCCcEEEEEECCCCCEEEeccCC--CCccCceECCCCCEEEEEEeCCCCceEE
Confidence 466889999999998743 24678999998776555554333 5666889999997 43 4456664 77
Q ss_pred EEeCCCCccccCCCCCccccccCeEEEEEECCeEEEE-ecC----CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCC
Q 003205 112 RYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCV-TEA----NRYFCMADFATMKVCELARPEVEELPHCVAVIEPK 186 (839)
Q Consensus 112 l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~-t~~----~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~ 186 (839)
+|++.+...+....+ ........++++|..++ +++ .++|.++ ..+....++.. .. . + ...|.
T Consensus 276 ~~d~~~g~~~~lt~~-----~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~d-l~~g~~~~lt~----~g-~-~-~~~~~ 342 (433)
T PRK04922 276 VMDLGSRQLTRLTNH-----FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVA-ASGGSAERLTF----QG-N-Y-NARAS 342 (433)
T ss_pred EEECCCCCeEECccC-----CCCccceEECCCCCEEEEEECCCCCceEEEEE-CCCCCeEEeec----CC-C-C-ccCEE
Confidence 788754432222222 12234578888886443 332 2466554 44444444432 11 1 1 12457
Q ss_pred CCCCCcEEEEEEeCC---eEEEEecCCcc--ccc-CCCceEEEECCCCcEEEEeecC---CeEEEEecCCCCccccccCC
Q 003205 187 YTMTGSVEVLIGTDA---GILMLDEDGVQ--KVD-DTLSQKMAVSPNGNFVACFTHD---GRLVVNNTNFSSPVIDESCE 257 (839)
Q Consensus 187 ~S~~~~~~v~~s~d~---tv~l~~~~~~~--~~~-~~~i~~ia~Spng~~iA~~~~~---g~i~i~ssd~~~~l~e~~~~ 257 (839)
+||||+.+++.+.++ .|++|+..+.. ... .......++||||++|+..+.+ +.|++++.+ +.........
T Consensus 343 ~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~ 421 (433)
T PRK04922 343 VSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSA 421 (433)
T ss_pred ECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccC
Confidence 888999999887543 68999976543 222 2234567999999999988764 248888776 3333333322
Q ss_pred CCCCCCceee
Q 003205 258 SALPPEQIAW 267 (839)
Q Consensus 258 ~~~~p~~~~W 267 (839)
.......+|
T Consensus 422 -~g~~~~p~w 430 (433)
T PRK04922 422 -DGEVREPAW 430 (433)
T ss_pred -CCCCCCCcc
Confidence 223345556
No 119
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.77 E-value=4.8e-07 Score=103.71 Aligned_cols=187 Identities=18% Similarity=0.166 Sum_probs=118.6
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EE-EEEeCCeEEEE
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LI-CVVQDGTVYRY 113 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv-~v~~dGtv~l~ 113 (839)
...++||+|..||..+++ ...+.|.+|+..+.....+.-.. +.+....|||||. ++ +...+|...+|
T Consensus 199 ~~p~wSPDG~~la~~s~~---------~~~~~I~~~dl~~g~~~~l~~~~--g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 199 ISPAWSPDGTKLAYVSFE---------SKKPVVYVHDLATGRRRVVANFK--GSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred ccceEcCCCCEEEEEEcc---------CCCcEEEEEECCCCCEEEeecCC--CCccceEECCCCCEEEEEEccCCCceEE
Confidence 467899999999998743 24578999998765555554333 6677899999996 54 45778887777
Q ss_pred --eCCCCccccCCCCCccccccCeEEEEEECCeEEEE-ecC----CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCC
Q 003205 114 --NIHAELIEPNASMGKECFEENVVECVFWGNGVVCV-TEA----NRYFCMADFATMKVCELARPEVEELPHCVAVIEPK 186 (839)
Q Consensus 114 --~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~-t~~----~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~ 186 (839)
+..|...+....+ ...+....++++|..++ +++ .++|.++ ..+....++.. ... + ...|.
T Consensus 268 ~~d~~~~~~~~lt~~-----~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~-~~~g~~~~lt~----~g~--~-~~~~~ 334 (427)
T PRK02889 268 TVNADGSGLRRLTQS-----SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMP-ASGGAAQRVTF----TGS--Y-NTSPR 334 (427)
T ss_pred EEECCCCCcEECCCC-----CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEE-CCCCceEEEec----CCC--C-cCceE
Confidence 5554432222222 22234567888886443 332 2466554 23333333321 111 1 12467
Q ss_pred CCCCCcEEEEEEeCC---eEEEEecCCcc--c-ccCCCceEEEECCCCcEEEEeecCC---eEEEEecC
Q 003205 187 YTMTGSVEVLIGTDA---GILMLDEDGVQ--K-VDDTLSQKMAVSPNGNFVACFTHDG---RLVVNNTN 246 (839)
Q Consensus 187 ~S~~~~~~v~~s~d~---tv~l~~~~~~~--~-~~~~~i~~ia~Spng~~iA~~~~~g---~i~i~ssd 246 (839)
+||||+.+++.+.++ .|++|+..+.. . .........++||||+.|++.+.++ .+++.+.+
T Consensus 335 ~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 335 ISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred ECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 889999999888754 69999977543 1 1222346789999999999988655 36666554
No 120
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.76 E-value=7e-07 Score=102.44 Aligned_cols=236 Identities=14% Similarity=0.130 Sum_probs=135.4
Q ss_pred CCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeC---CeEEEEeCCC-C
Q 003205 44 GGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQD---GTVYRYNIHA-E 118 (839)
Q Consensus 44 Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~d---Gtv~l~~~~G-~ 118 (839)
|.-||.+..+. ....+..|.+|+.+|.-...+..+. +.+.+..|||||+ |+.++.+ .++++|++.+ +
T Consensus 168 ~~ria~v~~~~------~~~~~~~i~i~d~dg~~~~~lt~~~--~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~ 239 (429)
T PRK01742 168 RTRIAYVVQKN------GGSQPYEVRVADYDGFNQFIVNRSS--QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA 239 (429)
T ss_pred CCEEEEEEEEc------CCCceEEEEEECCCCCCceEeccCC--CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc
Confidence 55666665321 0123579999999998777776665 7899999999997 5666543 3699999754 3
Q ss_pred c--cccCCCCCccccccCeEEEEEECCeEEEEe-c--CC--eEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCC
Q 003205 119 L--IEPNASMGKECFEENVVECVFWGNGVVCVT-E--AN--RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTG 191 (839)
Q Consensus 119 ~--~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t-~--~~--~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~ 191 (839)
. .....++ ....+++|+|..++. . ++ ++|.++ .++....++.. + . ..+..|.|||||
T Consensus 240 ~~~l~~~~g~--------~~~~~wSPDG~~La~~~~~~g~~~Iy~~d-~~~~~~~~lt~----~-~--~~~~~~~wSpDG 303 (429)
T PRK01742 240 RKVVASFRGH--------NGAPAFSPDGSRLAFASSKDGVLNIYVMG-ANGGTPSQLTS----G-A--GNNTEPSWSPDG 303 (429)
T ss_pred eEEEecCCCc--------cCceeECCCCCEEEEEEecCCcEEEEEEE-CCCCCeEeecc----C-C--CCcCCEEECCCC
Confidence 2 2222222 235788899864433 2 33 355443 44444455432 1 1 123456789999
Q ss_pred cEEEEEEe-CCeE--EEEecCCcc--cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCcee
Q 003205 192 SVEVLIGT-DAGI--LMLDEDGVQ--KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIA 266 (839)
Q Consensus 192 ~~~v~~s~-d~tv--~l~~~~~~~--~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~ 266 (839)
+.+++.+. ++.. |.++..+.. ...... ...++||||+.||+.+.++ +++|+..-++.. .. +.
T Consensus 304 ~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~-~l-t~--------- 370 (429)
T PRK01742 304 QSILFTSDRSGSPQVYRMSASGGGASLVGGRG-YSAQISADGKTLVMINGDN-VVKQDLTSGSTE-VL-SS--------- 370 (429)
T ss_pred CEEEEEECCCCCceEEEEECCCCCeEEecCCC-CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE-Ee-cC---------
Confidence 99888775 5544 444554432 221112 4578999999999887654 444543211110 00 00
Q ss_pred eecCceEEEEecCEEEEEcCCCCceEeccCCCeEEeecCCc-eEEEcc--CcceeeeccchhhHhhhccCC
Q 003205 267 WCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDG-VRILSN--SSMEFLQRVPASTEQIFAIGS 334 (839)
Q Consensus 267 WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~~~l~~E~DG-vRIit~--~~~~~l~~Vp~~~~~vf~igS 334 (839)
+.....+.|.+|+..++.+..|| .++|.. .....+++++.+...+..+.-
T Consensus 371 ------------------~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~w 423 (429)
T PRK01742 371 ------------------TFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAW 423 (429)
T ss_pred ------------------CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCccc
Confidence 00112456777777666655554 555442 236678888766555554433
No 121
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.75 E-value=2.5e-07 Score=93.70 Aligned_cols=196 Identities=14% Similarity=0.151 Sum_probs=130.5
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC-------CC-ceeEEEecCCCCCeEEEeecCCCe-EE
Q 003205 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-------GV-LISETVWKNPGGRLIGMSWSEDQT-LI 102 (839)
Q Consensus 32 ~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-------G~-ll~ti~~~~~~~~I~~~~fs~de~-Lv 102 (839)
......+.|+++|..|+...|... ...+.|.+|+-. ++ ++-.|+-+. +.|..+.|.|-++ ++
T Consensus 93 ~~~Vk~~~F~~~gn~~l~~tD~~m-------g~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~--skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 93 NSPVKRVDFSFGGNLILASTDKQM-------GYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD--SKITSALWGPLGETII 163 (327)
T ss_pred CCeeEEEeeccCCcEEEEEehhhc-------CcceEEEEEEccCChhhhcccCceEEecCCc--cceeeeeecccCCEEE
Confidence 345568889999888888876431 246788888754 44 488888887 8999999999766 78
Q ss_pred EEEeCCeEEEEeC-CCCc-cccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCce-EEEcCCCCCCCCCc
Q 003205 103 CVVQDGTVYRYNI-HAEL-IEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMK-VCELARPEVEELPH 178 (839)
Q Consensus 103 ~v~~dGtv~l~~~-~G~~-~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~-~~~l~~~~~~~~~~ 178 (839)
.+.+||.|..||. .|+. ...-.-| ...|.+.++++++..++|++.+ --.+.++.+.. .+.+.. ..|-
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h-----~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t----e~Pv 234 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEH-----SSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT----ERPV 234 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhh-----ccccccccccCCcceEEecccCccceeeeccceeeEEEeee----cccc
Confidence 9999999999985 5654 3333334 5579999999999999998764 23334433221 122211 1222
Q ss_pred eEEEeCCCCCCCCcEEEEEEeCCeEEEEecC---C----------------cccccCCCceEEEECCCCcEEEEeecCCe
Q 003205 179 CVAVIEPKYTMTGSVEVLIGTDAGILMLDED---G----------------VQKVDDTLSQKMAVSPNGNFVACFTHDGR 239 (839)
Q Consensus 179 ~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~---~----------------~~~~~~~~i~~ia~Spng~~iA~~~~~g~ 239 (839)
+...+||....+|+.+-..--=+-... | ..++|-|||+.++|+|+|+--|++++||.
T Consensus 235 ----N~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~ 310 (327)
T KOG0643|consen 235 ----NTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGY 310 (327)
T ss_pred ----cceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCce
Confidence 222344455666655432211111111 1 11589999999999999999999999999
Q ss_pred EEEEecCCCCcc
Q 003205 240 LVVNNTNFSSPV 251 (839)
Q Consensus 240 i~i~ssd~~~~l 251 (839)
+.+-. |.+.+
T Consensus 311 VR~h~--Fd~~Y 320 (327)
T KOG0643|consen 311 VRLHH--FDSNY 320 (327)
T ss_pred EEEEE--eccch
Confidence 88863 44444
No 122
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.74 E-value=5.8e-07 Score=92.60 Aligned_cols=264 Identities=13% Similarity=0.150 Sum_probs=160.4
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc--CCCCceeEEEecCCCCCeEEEeecCCCeE-EEEEeCC
Q 003205 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN--SAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDG 108 (839)
Q Consensus 32 ~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~--~~G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dG 108 (839)
+-+...++|||.-..+..++ +.|++||+|. .+|.++.+-.-.. .++|.++.|+.||.. .++..||
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~-----------SWD~tVR~wevq~~g~~~~ka~~~~-~~PvL~v~WsddgskVf~g~~Dk 94 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAG-----------SWDGTVRIWEVQNSGQLVPKAQQSH-DGPVLDVCWSDDGSKVFSGGCDK 94 (347)
T ss_pred ccchheeEeccccCceEEec-----------ccCCceEEEEEecCCcccchhhhcc-CCCeEEEEEccCCceEEeeccCC
Confidence 33566899999433333333 4899999998 5688888744332 289999999999986 5999999
Q ss_pred eEEEEeCCCCccccCCCCCccccccCeEEEEEECCeE--EEEecCCe-EEEEecCCCceEEEcCCCCCCCCCceEEE--e
Q 003205 109 TVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGV--VCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAV--I 183 (839)
Q Consensus 109 tv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~--v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~~w~v--i 183 (839)
.+++||+........-.| ...|..|++-+.+. .++|++.+ -...|+-..+.+ +....+ +.+|.+. +
T Consensus 95 ~~k~wDL~S~Q~~~v~~H-----d~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p--v~t~~L--PeRvYa~Dv~ 165 (347)
T KOG0647|consen 95 QAKLWDLASGQVSQVAAH-----DAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP--VATLQL--PERVYAADVL 165 (347)
T ss_pred ceEEEEccCCCeeeeeec-----ccceeEEEEecCCCcceeEecccccceeecccCCCCe--eeeeec--cceeeehhcc
Confidence 999999764454434447 67789998877555 78999875 345565443332 222112 3344433 3
Q ss_pred CCCCCCCCcEEEEEEeCCeEEEEecCCcc---ccc----CCCceEEEECCCCcEEEEeecCCeEEEEecCCC--Cccccc
Q 003205 184 EPKYTMTGSVEVLIGTDAGILMLDEDGVQ---KVD----DTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFS--SPVIDE 254 (839)
Q Consensus 184 ~~~~S~~~~~~v~~s~d~tv~l~~~~~~~---~~~----~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~--~~l~e~ 254 (839)
. .+.|.+..+..|.++++.+.. +.. .--+..|+.-+|++.-|+++-.|.+-|-..|-. ..--.|
T Consensus 166 ~-------pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtF 238 (347)
T KOG0647|consen 166 Y-------PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTF 238 (347)
T ss_pred C-------ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeE
Confidence 2 356666668889999986543 222 223678898899888899999999888766532 111134
Q ss_pred cCCCCCCCCceeeecCceEEEEecCEEEEEcCCCCceEeccCCCeEEeecCCc-eEEEccCcceeeeccchhhHhhhccC
Q 003205 255 SCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIG 333 (839)
Q Consensus 255 ~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~~~~vf~ig 333 (839)
.+|....+ .+| .|+-| .+|.|-+....++....|| .-.|..+...-|..-|.+..-|-.=.
T Consensus 239 kCHR~~~~------~~~--------~VYaV----Nsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~ 300 (347)
T KOG0647|consen 239 KCHRSTNS------VND--------DVYAV----NSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCS 300 (347)
T ss_pred EEeccCCC------CCC--------ceEEe----cceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeE
Confidence 44422111 111 11211 1355555555556666666 55566655444444444444444334
Q ss_pred CCChhhhH
Q 003205 334 STSPAALL 341 (839)
Q Consensus 334 S~~pga~L 341 (839)
+...|+++
T Consensus 301 fn~~G~if 308 (347)
T KOG0647|consen 301 FNRNGSIF 308 (347)
T ss_pred ecCCCCEE
Confidence 44444443
No 123
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.74 E-value=2e-07 Score=104.02 Aligned_cols=229 Identities=13% Similarity=0.207 Sum_probs=156.9
Q ss_pred CeEEEeecCCCeEEEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCC-CceE
Q 003205 89 RLIGMSWSEDQTLICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFA-TMKV 165 (839)
Q Consensus 89 ~I~~~~fs~de~Lv~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~-~~~~ 165 (839)
-|.+++|-|||.-+++..+..+.+||. +|.+.++..|| .+.|..+..+.||..+++++-+ .+.+|+-. +..+
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgH-----KDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGH-----KDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL 88 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccc-----cceEEEEEEccCCceeccCCCceeEEEeccccccee
Confidence 589999999997555555566999985 79999999999 7889988888899999998654 56667622 1111
Q ss_pred EEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc---cccCCCceEEEECCCCcEEEEeecCCeEEE
Q 003205 166 CELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---KVDDTLSQKMAVSPNGNFVACFTHDGRLVV 242 (839)
Q Consensus 166 ~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~---~~~~~~i~~ia~Spng~~iA~~~~~g~i~i 242 (839)
+.+. +..+.|+...| =.+.++..+-+. .=+|+.+... .-...++...+...||+++|++-.+|||.|
T Consensus 89 -kYSH---~D~IQCMsFNP-----~~h~LasCsLsd-FglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsi 158 (1081)
T KOG1538|consen 89 -KYSH---NDAIQCMSFNP-----ITHQLASCSLSD-FGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISI 158 (1081)
T ss_pred -eecc---CCeeeEeecCc-----hHHHhhhcchhh-ccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEe
Confidence 1111 13466775544 333344333322 3467766443 233456788899999999999999999999
Q ss_pred EecCCCCcc-ccccCCCCCCCCceeee-----c-CceEE-EEecCEEEEEcCCCC-------------ceEeccCCCeEE
Q 003205 243 NNTNFSSPV-IDESCESALPPEQIAWC-----G-MDSVL-LYWNDMLVMVAPQAE-------------PVQYFYDEPLVL 301 (839)
Q Consensus 243 ~ssd~~~~l-~e~~~~~~~~p~~~~Wc-----G-~d~vv-~~~~~~l~lig~~~~-------------~v~f~~~~~~~l 301 (839)
.+..-.... -+-...+.++...++|| | +|.+. +-|+.++.+..-.|. .++|..+|..++
T Consensus 159 RNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~L 238 (1081)
T KOG1538|consen 159 RNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYIL 238 (1081)
T ss_pred ecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEE
Confidence 865533332 23334456677899999 3 33443 468887654433322 578888999999
Q ss_pred eecCCc-eEEEccCcceeeeccchhhHhhhccC
Q 003205 302 IPECDG-VRILSNSSMEFLQRVPASTEQIFAIG 333 (839)
Q Consensus 302 ~~E~DG-vRIit~~~~~~l~~Vp~~~~~vf~ig 333 (839)
++..|| +.++|.+ +-.|..|.+--..|+.+.
T Consensus 239 iGGsdk~L~~fTR~-GvrLGTvg~~D~WIWtV~ 270 (1081)
T KOG1538|consen 239 LGGSDKQLSLFTRD-GVRLGTVGEQDSWIWTVQ 270 (1081)
T ss_pred EccCCCceEEEeec-CeEEeeccccceeEEEEE
Confidence 999996 9999999 667777777666666543
No 124
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.73 E-value=1.3e-06 Score=100.03 Aligned_cols=165 Identities=15% Similarity=0.206 Sum_probs=105.2
Q ss_pred CceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEe---CCeEEEEeCCC-CccccCCCCCccccccCeEEEE
Q 003205 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQ---DGTVYRYNIHA-ELIEPNASMGKECFEENVVECV 139 (839)
Q Consensus 65 ~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~---dGtv~l~~~~G-~~~~~~~g~~~~~~~~~V~~~~ 139 (839)
...|.+++.+|.-...+..+. +.+.+..|||||+ |+.++. +..+++|++.+ +...... . ...+....
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~~--~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-~-----~~~~~~~~ 249 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRSP--QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-F-----PRHNGAPA 249 (429)
T ss_pred ceeEEEEcCCCCCCEEeecCC--CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-C-----CCCcCCeE
Confidence 457999999998777776555 7899999999997 554442 34577888754 3322111 1 11234578
Q ss_pred EECCeEEEE-ec--CC--eEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCC---eEEEEecCCc
Q 003205 140 FWGNGVVCV-TE--AN--RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDA---GILMLDEDGV 211 (839)
Q Consensus 140 ~~~~G~v~~-t~--~~--~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~---tv~l~~~~~~ 211 (839)
++|+|..++ +. ++ ++|.+ +.++....++.. .. ..+..|.|||||+.+++.+..+ .||.++.++.
T Consensus 250 ~SPDG~~La~~~~~~g~~~I~~~-d~~tg~~~~lt~----~~---~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g 321 (429)
T PRK03629 250 FSPDGSKLAFALSKTGSLNLYVM-DLASGQIRQVTD----GR---SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG 321 (429)
T ss_pred ECCCCCEEEEEEcCCCCcEEEEE-ECCCCCEEEccC----CC---CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC
Confidence 889986544 32 22 45544 455555555543 11 1235568899999999888743 6788887754
Q ss_pred c--c--ccCCCceEEEECCCCcEEEEeecCC---eEEEEec
Q 003205 212 Q--K--VDDTLSQKMAVSPNGNFVACFTHDG---RLVVNNT 245 (839)
Q Consensus 212 ~--~--~~~~~i~~ia~Spng~~iA~~~~~g---~i~i~ss 245 (839)
. . ...+.....++||||+.||+.+.++ .|++++.
T Consensus 322 ~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl 362 (429)
T PRK03629 322 APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 362 (429)
T ss_pred CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEEC
Confidence 3 2 2233456789999999999877543 3666654
No 125
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.73 E-value=2.5e-07 Score=95.69 Aligned_cols=175 Identities=15% Similarity=0.227 Sum_probs=122.1
Q ss_pred cCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeEEEEe-CCCCc-cccCCCCCccccccCeEEE
Q 003205 63 SALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYN-IHAEL-IEPNASMGKECFEENVVEC 138 (839)
Q Consensus 63 ~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv~l~~-~~G~~-~~~~~g~~~~~~~~~V~~~ 138 (839)
+.|+.|-+|+- +=.++.+++.|. +.|.+++--|.|+| ++|+.|+++|+|| +.|+- ....+++.+ .. +
T Consensus 104 sdDG~i~iw~~~~W~~~~slK~H~--~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~a-----t~--v 174 (362)
T KOG0294|consen 104 SDDGHIIIWRVGSWELLKSLKAHK--GQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKA-----TL--V 174 (362)
T ss_pred cCCCcEEEEEcCCeEEeeeecccc--cccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcc-----ee--e
Confidence 46899999994 336889999999 99999999999999 6999999999999 47765 334555532 22 6
Q ss_pred EEECCeE--EEEecCC-eEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc---
Q 003205 139 VFWGNGV--VCVTEAN-RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--- 212 (839)
Q Consensus 139 ~~~~~G~--v~~t~~~-~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~--- 212 (839)
++.+.|- ++...+. .+|.+.+.. ....+..+ ..+.|-... +++.++....|+.|.+||.++..
T Consensus 175 ~w~~~Gd~F~v~~~~~i~i~q~d~A~--v~~~i~~~---~r~l~~~~l------~~~~L~vG~d~~~i~~~D~ds~~~~~ 243 (362)
T KOG0294|consen 175 SWSPQGDHFVVSGRNKIDIYQLDNAS--VFREIENP---KRILCATFL------DGSELLVGGDNEWISLKDTDSDTPLT 243 (362)
T ss_pred EEcCCCCEEEEEeccEEEEEecccHh--Hhhhhhcc---ccceeeeec------CCceEEEecCCceEEEeccCCCccce
Confidence 7777665 3332222 345544421 11111110 123432222 66777888889999999998543
Q ss_pred --cccCCCceEEE--ECCCCcEEEEeecCCeEEEEecCCC-----CccccccCC
Q 003205 213 --KVDDTLSQKMA--VSPNGNFVACFTHDGRLVVNNTNFS-----SPVIDESCE 257 (839)
Q Consensus 213 --~~~~~~i~~ia--~Spng~~iA~~~~~g~i~i~ssd~~-----~~l~e~~~~ 257 (839)
..|..+|..|+ -.|.+.+|++++.||.|.||+.|.. ..++|++++
T Consensus 244 ~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~ 297 (362)
T KOG0294|consen 244 EFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTN 297 (362)
T ss_pred eeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeecC
Confidence 56888899887 4577889999999999999998866 456666664
No 126
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.72 E-value=4.4e-07 Score=97.77 Aligned_cols=177 Identities=11% Similarity=0.121 Sum_probs=116.3
Q ss_pred CCeEEEEecCchhhhhhcccCCceEEEEcCCCC----c---ee----E-----------EEecCCCCCeEEEeecCCC--
Q 003205 44 GGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV----L---IS----E-----------TVWKNPGGRLIGMSWSEDQ-- 99 (839)
Q Consensus 44 Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~----l---l~----t-----------i~~~~~~~~I~~~~fs~de-- 99 (839)
|..+|+.. -++.|.||+.+-. + |+ + -.+|. +.|.++.|.-+=
T Consensus 192 gNyvAiGt------------mdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHT--davl~Ls~n~~~~n 257 (463)
T KOG0270|consen 192 GNYVAIGT------------MDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHT--DAVLALSWNRNFRN 257 (463)
T ss_pred cceEEEec------------cCceeEEeccccccccccceeechhhhhhhhhhcccccccccch--HHHHHHHhccccce
Confidence 34777764 6899999998642 1 11 1 11344 567889998753
Q ss_pred eEEEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEEEC-CeEEEEecCCeE-EEEecCCCceEEEcCCCCCCCC
Q 003205 100 TLICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWG-NGVVCVTEANRY-FCMADFATMKVCELARPEVEEL 176 (839)
Q Consensus 100 ~Lv~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~~~~-~~v~~~~~~~~~~l~~~~~~~~ 176 (839)
-|++++.|.||++||+ .|+..++.-.| ...|.+..+++ .+.++++++.+- ..+.+... ++ ..
T Consensus 258 VLaSgsaD~TV~lWD~~~g~p~~s~~~~-----~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~------~~----~s 322 (463)
T KOG0270|consen 258 VLASGSADKTVKLWDVDTGKPKSSITHH-----GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD------PS----NS 322 (463)
T ss_pred eEEecCCCceEEEEEcCCCCcceehhhc-----CCceeEEEecCCCceEEEeccccceEEeeeccC------cc----cc
Confidence 3789999999999997 57775544445 56799989888 999999998653 23333211 11 22
Q ss_pred CceEEEeCC----CCCCCCcEEEEE-EeCCeEEEEecCCcc------cccCCCceEEEECCCC-cEEEEeecCCeEEEEe
Q 003205 177 PHCVAVIEP----KYTMTGSVEVLI-GTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNG-NFVACFTHDGRLVVNN 244 (839)
Q Consensus 177 ~~~w~vi~~----~~S~~~~~~v~~-s~d~tv~l~~~~~~~------~~~~~~i~~ia~Spng-~~iA~~~~~g~i~i~s 244 (839)
+.-|.+-.. .+.|.....+++ ..||+||-+|..... ..|.++|+.|++++.- .++++.+.++++++|+
T Consensus 323 ~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~ 402 (463)
T KOG0270|consen 323 GKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWK 402 (463)
T ss_pred CceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEe
Confidence 333443000 001111122333 358999999987542 6789999999999875 3799999999999998
Q ss_pred cCCCC
Q 003205 245 TNFSS 249 (839)
Q Consensus 245 sd~~~ 249 (839)
-+-.+
T Consensus 403 ~~~~~ 407 (463)
T KOG0270|consen 403 FDVDS 407 (463)
T ss_pred ecCCC
Confidence 65333
No 127
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.71 E-value=3.9e-06 Score=91.72 Aligned_cols=238 Identities=15% Similarity=0.156 Sum_probs=144.2
Q ss_pred ccccccEEeeccccccccCCCCCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeE-EEecCCCC
Q 003205 10 WQLVYNRYYRKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISE-TVWKNPGG 88 (839)
Q Consensus 10 W~~Lg~~~yr~~e~y~m~w~~~~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~t-i~~~~~~~ 88 (839)
|..=|+.+.+++.+..-. + .--...++|.++|..|- .| ++++|.||+..|..+.. +..|. |
T Consensus 227 w~~~~~~l~k~~~~fek~--e-kk~Vl~v~F~engdviT--gD-----------S~G~i~Iw~~~~~~~~k~~~aH~--g 288 (626)
T KOG2106|consen 227 WTLRGGSLVKRQGIFEKR--E-KKFVLCVTFLENGDVIT--GD-----------SGGNILIWSKGTNRISKQVHAHD--G 288 (626)
T ss_pred EEccCCceEEEeeccccc--c-ceEEEEEEEcCCCCEEe--ec-----------CCceEEEEeCCCceEEeEeeecC--C
Confidence 555555666665555311 0 11335889999998653 32 68999999999987766 55666 9
Q ss_pred CeEEEeecCCCeEEEEEeCCeEEEEeCC-CCccccCCCCCccccccCeEEEEEECCeEEEEecCCeEE--EEecC-----
Q 003205 89 RLIGMSWSEDQTLICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYF--CMADF----- 160 (839)
Q Consensus 89 ~I~~~~fs~de~Lv~v~~dGtv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~--~v~~~----- 160 (839)
.|.++.--.+|.|+++..|..|..|+-. -++..+-++.. -..|..+.--..++.+-|..+.+. .+++-
T Consensus 289 gv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~----~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v 364 (626)
T KOG2106|consen 289 GVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQ----FGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTV 364 (626)
T ss_pred ceEEEEEecCccEeecCccceEEeccccccccccccCchh----cCCeeEEecCCCcEEEeeccceEEEeeecCCceEEE
Confidence 9999999999999999999999999721 12344444441 122443322223344444333211 11110
Q ss_pred --CCceEEEcCC---------CCCCCCCc-------eEEE--e----CCCCCCCCcEEEEEEeCCeEEEEecCCcc----
Q 003205 161 --ATMKVCELAR---------PEVEELPH-------CVAV--I----EPKYTMTGSVEVLIGTDAGILMLDEDGVQ---- 212 (839)
Q Consensus 161 --~~~~~~~l~~---------~~~~~~~~-------~w~v--i----~~~~S~~~~~~v~~s~d~tv~l~~~~~~~---- 212 (839)
++-..+-|+. .+.+.... -|.. . ...|.|+| ++++....|.-+++|.+...
T Consensus 365 ~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~ 443 (626)
T KOG2106|consen 365 QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTI 443 (626)
T ss_pred EecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEE
Confidence 0000111111 01001111 2332 1 12378888 77777778888888877654
Q ss_pred cccCCCceEEEECCCCcEEEEeecCCeEEEEecC-CCCccccccCCCCCCCCceeeecC
Q 003205 213 KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN-FSSPVIDESCESALPPEQIAWCGM 270 (839)
Q Consensus 213 ~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd-~~~~l~e~~~~~~~~p~~~~WcG~ 270 (839)
.....|++.|++||+|.++|.++.|+.|+|+..| -++.+.......-++..-+.|..+
T Consensus 444 ~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~D 502 (626)
T KOG2106|consen 444 HTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSD 502 (626)
T ss_pred EecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCC
Confidence 3458899999999999999999999998887644 355665554332345567777643
No 128
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=2.5e-07 Score=93.18 Aligned_cols=171 Identities=15% Similarity=0.132 Sum_probs=123.7
Q ss_pred cCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCC-Ce-EEEEEeCCeEEEEeC--CCCccccCCCCCccccccCeEE
Q 003205 63 SALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSED-QT-LICVVQDGTVYRYNI--HAELIEPNASMGKECFEENVVE 137 (839)
Q Consensus 63 ~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~d-e~-Lv~v~~dGtv~l~~~--~G~~~~~~~g~~~~~~~~~V~~ 137 (839)
+-|++||+|++ .++-+.|+++|. ..|....|+|- .. +++++.||+.++||+ .|+... ...| +..|.+
T Consensus 124 SWD~TiKLW~~~r~~Sv~Tf~gh~--~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah-----~~Eil~ 195 (311)
T KOG0277|consen 124 SWDGTIKLWDPNRPNSVQTFNGHN--SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAH-----NSEILC 195 (311)
T ss_pred ccCCceEeecCCCCcceEeecCCc--cEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEec-----cceeEe
Confidence 47999999995 678899999998 99999999994 34 579999999999974 688765 3345 456787
Q ss_pred EEEEC-CeEEEEecCC-eEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCC-cEEEEEEeCCeEEEEecCCcc--
Q 003205 138 CVFWG-NGVVCVTEAN-RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTG-SVEVLIGTDAGILMLDEDGVQ-- 212 (839)
Q Consensus 138 ~~~~~-~G~v~~t~~~-~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~-~~~v~~s~d~tv~l~~~~~~~-- 212 (839)
|-++. +--+++|++. +....|++...+. ++.. -..|..+|-...|||.. .+++.++.|=|+.+|+.....
T Consensus 196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-pl~e----L~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~ 270 (311)
T KOG0277|consen 196 CDWSKYNHNVLATGGVDNLVRGWDIRNLRT-PLFE----LNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA 270 (311)
T ss_pred ecccccCCcEEEecCCCceEEEEehhhccc-ccee----ecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh
Confidence 77655 7778888754 3555665543221 1211 12445677666788876 477888899999999977332
Q ss_pred ----cccCCCceEEEECC-CCcEEEEeecCCeEEEEecC
Q 003205 213 ----KVDDTLSQKMAVSP-NGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 213 ----~~~~~~i~~ia~Sp-ng~~iA~~~~~g~i~i~ssd 246 (839)
..|..-+..+-+|+ ++..+|..+-|+.++||+.-
T Consensus 271 ~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p~ 309 (311)
T KOG0277|consen 271 IETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNPG 309 (311)
T ss_pred hhhhhccceEEeccccccccCceeeecccccceeeeccc
Confidence 34555566777776 45689999999999999753
No 129
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.69 E-value=2.2e-06 Score=98.53 Aligned_cols=167 Identities=15% Similarity=0.243 Sum_probs=112.6
Q ss_pred CceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEe---CCeEEEEeCCCCccccCCCCCccccccCeEEEEE
Q 003205 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQ---DGTVYRYNIHAELIEPNASMGKECFEENVVECVF 140 (839)
Q Consensus 65 ~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~---dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~ 140 (839)
...|.+++.+|.....+..+. +.+....|||||+ |+.++. ++.+++|++.+...+..... ...+....+
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~--~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~-----~g~~~~~~~ 253 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGS--SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF-----PGMTFAPRF 253 (435)
T ss_pred ceEEEEECCCCCCcEEEecCC--CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC-----CCcccCcEE
Confidence 468999999999988888776 8899999999997 566553 46799999764332211112 234556788
Q ss_pred ECCeEEE-EecC----CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeC---CeEEEEecCCcc
Q 003205 141 WGNGVVC-VTEA----NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTD---AGILMLDEDGVQ 212 (839)
Q Consensus 141 ~~~G~v~-~t~~----~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d---~tv~l~~~~~~~ 212 (839)
+++|-.+ ++.+ .++|.++ ..+....+|.. .+. ....|.|||||+.+++.+.. ..||+++.++..
T Consensus 254 SPDG~~la~~~~~~g~~~Iy~~d-~~~~~~~~Lt~-----~~~--~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~ 325 (435)
T PRK05137 254 SPDGRKVVMSLSQGGNTDIYTMD-LRSGTTTRLTD-----SPA--IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN 325 (435)
T ss_pred CCCCCEEEEEEecCCCceEEEEE-CCCCceEEccC-----CCC--ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence 8888543 3432 3466554 44445555543 111 13456889999999988753 369999987653
Q ss_pred --cc--cCCCceEEEECCCCcEEEEeecCC---eEEEEecC
Q 003205 213 --KV--DDTLSQKMAVSPNGNFVACFTHDG---RLVVNNTN 246 (839)
Q Consensus 213 --~~--~~~~i~~ia~Spng~~iA~~~~~g---~i~i~ssd 246 (839)
.. ..+.+...++||||+.||+.+.++ .|++++.+
T Consensus 326 ~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~ 366 (435)
T PRK05137 326 PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD 366 (435)
T ss_pred eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECC
Confidence 22 234567789999999999877542 47777654
No 130
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=98.69 E-value=7.3e-07 Score=96.48 Aligned_cols=173 Identities=14% Similarity=0.149 Sum_probs=113.5
Q ss_pred cCCceEEEEcCCC---Cce--------eEEEecCCCCCeEEEeecC--CCeEEEEEeCCeEEEEeCCCCc--------cc
Q 003205 63 SALRKLRIFNSAG---VLI--------SETVWKNPGGRLIGMSWSE--DQTLICVVQDGTVYRYNIHAEL--------IE 121 (839)
Q Consensus 63 ~~~~~I~iy~~~G---~ll--------~ti~~~~~~~~I~~~~fs~--de~Lv~v~~dGtv~l~~~~G~~--------~~ 121 (839)
+..+.|.||+..- ... -++.+|+ +.=.++.|++ .+.|++.++|++|.+|++.+.- ..
T Consensus 144 t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~--~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~ 221 (422)
T KOG0264|consen 144 TSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHE--KEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKT 221 (422)
T ss_pred CCCCCEEEEEeccCCCcccccccCCCceEEEeec--ccccccccccccceeEeeccCCCcEEEEeccccccCCccccceE
Confidence 4567788887532 222 2788888 5667889998 4679999999999999876443 22
Q ss_pred cCCCCCccccccCeEEEEEEC--CeEEEEecCCeEEEEecCCCceEEEcCCCCCCCCCceEEE-eCCCCCCCCcEEEEEE
Q 003205 122 PNASMGKECFEENVVECVFWG--NGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAV-IEPKYTMTGSVEVLIG 198 (839)
Q Consensus 122 ~~~g~~~~~~~~~V~~~~~~~--~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~v-i~~~~S~~~~~~v~~s 198 (839)
..-+| +..|-++++.+ ..+....++.....+++.... ..........++-..|++ ++|. ++..+++++
T Consensus 222 ~~~~h-----~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~---~~~ilAT~S 292 (422)
T KOG0264|consen 222 IFSGH-----EDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPF---NEFILATGS 292 (422)
T ss_pred EeecC-----CcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCC---CCceEEecc
Confidence 34456 56677888866 333333333333334443321 111111011123334555 3332 567788888
Q ss_pred eCCeEEEEecCCcc------cccCCCceEEEECCCCc-EEEEeecCCeEEEEecC
Q 003205 199 TDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGN-FVACFTHDGRLVVNNTN 246 (839)
Q Consensus 199 ~d~tv~l~~~~~~~------~~~~~~i~~ia~Spng~-~iA~~~~~g~i~i~ssd 246 (839)
.|+||.|||..... ..|...|.+|.+||+.. .+|+.+.||++.||+.+
T Consensus 293 ~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 293 ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 89999999998754 57888899999999985 68888899999999744
No 131
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.68 E-value=9.4e-08 Score=108.87 Aligned_cols=196 Identities=15% Similarity=0.137 Sum_probs=135.0
Q ss_pred CCceEEEEcCCC----CceeEEEecCCCCCeEEEeecCCCe--EEEEEeCCeEEEEeCCCCc-cccCCCCCccccccCeE
Q 003205 64 ALRKLRIFNSAG----VLISETVWKNPGGRLIGMSWSEDQT--LICVVQDGTVYRYNIHAEL-IEPNASMGKECFEENVV 136 (839)
Q Consensus 64 ~~~~I~iy~~~G----~ll~ti~~~~~~~~I~~~~fs~de~--Lv~v~~dGtv~l~~~~G~~-~~~~~g~~~~~~~~~V~ 136 (839)
..+.|-+||.+- +++..+.-|. -.+.++.|++-+- |+++++||+|++||+.-+- ..+..+. .+.|.
T Consensus 108 ~nG~i~vWdlnk~~rnk~l~~f~EH~--Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~n-----SESiR 180 (839)
T KOG0269|consen 108 TNGVISVWDLNKSIRNKLLTVFNEHE--RSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSN-----SESIR 180 (839)
T ss_pred CCCcEEEEecCccccchhhhHhhhhc--cceeeeeeccCCccEEEecCCCceEEEEeeeccccccccccc-----chhhh
Confidence 468888898654 4566677777 7899999999773 6899999999999987654 4445554 56799
Q ss_pred EEEEEC-CeEEEEec-CCeEEEEecCCCceEEEcCCCCCC-CCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-
Q 003205 137 ECVFWG-NGVVCVTE-ANRYFCMADFATMKVCELARPEVE-ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ- 212 (839)
Q Consensus 137 ~~~~~~-~G~v~~t~-~~~~~~v~~~~~~~~~~l~~~~~~-~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~- 212 (839)
+++|++ .|..+++. ++-....|++..|+...+. +. +.....++ .++|++..+++.+.|++|++|+.++..
T Consensus 181 DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k---~~AH~GpV~c~---nwhPnr~~lATGGRDK~vkiWd~t~~~~ 254 (839)
T KOG0269|consen 181 DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKK---LTAHNGPVLCL---NWHPNREWLATGGRDKMVKIWDMTDSRA 254 (839)
T ss_pred ceeeccCCCceEEEecCCceEEEeeccCchhHHHH---hhcccCceEEE---eecCCCceeeecCCCccEEEEeccCCCc
Confidence 999998 55555554 4455667877655422111 11 22222333 567799999999999999999999654
Q ss_pred -----cccCCCceEEEECCCCc-EEEEee--cCCeEEEEecCCCCcc---ccccCCCCCCCCceeeecCceEEE
Q 003205 213 -----KVDDTLSQKMAVSPNGN-FVACFT--HDGRLVVNNTNFSSPV---IDESCESALPPEQIAWCGMDSVLL 275 (839)
Q Consensus 213 -----~~~~~~i~~ia~Spng~-~iA~~~--~~g~i~i~ssd~~~~l---~e~~~~~~~~p~~~~WcG~d~vv~ 275 (839)
.....|+.+|++=|..+ +||+-+ .|-.|.||+. .+.+ ..|+.+. .....|.|-+.|..++
T Consensus 255 ~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDv--rRPYIP~~t~~eH~-~~vt~i~W~~~d~~~l 325 (839)
T KOG0269|consen 255 KPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDV--RRPYIPYATFLEHT-DSVTGIAWDSGDRINL 325 (839)
T ss_pred cceeEEeecceeeeeeeccCccchhhhhhccccceEEEEee--ccccccceeeeccC-ccccceeccCCCceee
Confidence 34567899999999986 365544 4556999964 4443 2344442 2456888877665544
No 132
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.68 E-value=1.6e-06 Score=89.79 Aligned_cols=265 Identities=16% Similarity=0.197 Sum_probs=173.8
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEe
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYN 114 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~ 114 (839)
...+.++|.++-+.+.+ .|+++++|+-.+..+.----++ ++|.+-+|.++-+.+++.-||+||+||
T Consensus 16 IS~v~f~~~~~~LLvss------------WDgslrlYdv~~~~l~~~~~~~--~plL~c~F~d~~~~~~G~~dg~vr~~D 81 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSS------------WDGSLRLYDVPANSLKLKFKHG--APLLDCAFADESTIVTGGLDGQVRRYD 81 (323)
T ss_pred eeeEEEcCcCCcEEEEe------------ccCcEEEEeccchhhhhheecC--CceeeeeccCCceEEEeccCceEEEEE
Confidence 34788889999888875 8999999998887554433355 899999999988999999999999999
Q ss_pred CCCCccccCCCCCccccccCeEEEEEEC-CeEEEEecCCeEEEEecCCCceEEEcCCCCCC--CCCceEEEeCCCCCCCC
Q 003205 115 IHAELIEPNASMGKECFEENVVECVFWG-NGVVCVTEANRYFCMADFATMKVCELARPEVE--ELPHCVAVIEPKYTMTG 191 (839)
Q Consensus 115 ~~G~~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~--~~~~~w~vi~~~~S~~~ 191 (839)
+.+.-..+...| ...|..+...+ .|.++..+=.+-+.+|+ |+...... ..+ ...-|+.+ .|
T Consensus 82 ln~~~~~~igth-----~~~i~ci~~~~~~~~vIsgsWD~~ik~wD---~R~~~~~~-~~d~~kkVy~~~v-------~g 145 (323)
T KOG1036|consen 82 LNTGNEDQIGTH-----DEGIRCIEYSYEVGCVISGSWDKTIKFWD---PRNKVVVG-TFDQGKKVYCMDV-------SG 145 (323)
T ss_pred ecCCcceeeccC-----CCceEEEEeeccCCeEEEcccCccEEEEe---cccccccc-ccccCceEEEEec-------cC
Confidence 876655555556 66788777665 67666555334455665 22111110 111 22333443 77
Q ss_pred cEEEEEEeCCeEEEEecCCcc-----c--ccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCC----ccccccCCCCC
Q 003205 192 SVEVLIGTDAGILMLDEDGVQ-----K--VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSS----PVIDESCESAL 260 (839)
Q Consensus 192 ~~~v~~s~d~tv~l~~~~~~~-----~--~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~----~l~e~~~~~~~ 260 (839)
+.+|....|..|..||+..+. . .-.-.+..|++=||+.=-|+.+-+|.+.+=.-|.++ .-.-|.+|...
T Consensus 146 ~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~ 225 (323)
T KOG1036|consen 146 NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLS 225 (323)
T ss_pred CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecc
Confidence 888888889999999998764 1 112346789999998878888889998774333221 11123333110
Q ss_pred CCCceeeecCceEEEEecCEEEEEcCCCCceEeccCCCeEEeecCCc-eEEEccCcceeeeccchhhHhhhccCCCChhh
Q 003205 261 PPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIGSTSPAA 339 (839)
Q Consensus 261 ~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~~~~vf~igS~~pga 339 (839)
.+|.-+. + | -..+.|.+=...+.+...|| |-+|....=.-|..++..-.+|=.+.++..|.
T Consensus 226 --------~~~~~~~-y--------P-VNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~ 287 (323)
T KOG1036|consen 226 --------EKDTEII-Y--------P-VNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGS 287 (323)
T ss_pred --------cCCceEE-E--------E-eceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCC
Confidence 0111111 0 1 11355554455677888888 88888877777777777765677777788888
Q ss_pred hHHHHHHH
Q 003205 340 LLYDALDH 347 (839)
Q Consensus 340 ~L~~A~~~ 347 (839)
+|.-|..-
T Consensus 288 ~LAia~sy 295 (323)
T KOG1036|consen 288 LLAIASSY 295 (323)
T ss_pred eEEEEech
Confidence 77766543
No 133
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.68 E-value=1.8e-06 Score=93.49 Aligned_cols=214 Identities=14% Similarity=0.128 Sum_probs=135.9
Q ss_pred cCCceEEEEcCCCC--ceeEE---EecCCCCCeEEEeecCCC--eEEEEEeCCeEEEEeCCCCccccCCCCCccccccCe
Q 003205 63 SALRKLRIFNSAGV--LISET---VWKNPGGRLIGMSWSEDQ--TLICVVQDGTVYRYNIHAELIEPNASMGKECFEENV 135 (839)
Q Consensus 63 ~~~~~I~iy~~~G~--ll~ti---~~~~~~~~I~~~~fs~de--~Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V 135 (839)
+..|+|=+||..|+ -...+ .-|+ +.|-+|.|+|.. ++++.+.|||+|+-|+.|......+....+ ....
T Consensus 207 dK~G~VG~Wn~~~~~~d~d~v~~f~~hs--~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d--~~~f 282 (498)
T KOG4328|consen 207 DKGGQVGLWNFGTQEKDKDGVYLFTPHS--GPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTD--NIWF 282 (498)
T ss_pred cCCCcEEEEecCCCCCccCceEEeccCC--ccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCcc--ceee
Confidence 36799999998633 33332 2344 789999999965 578999999999889987764333322111 2334
Q ss_pred EEEEEEC-CeEEEEecCCeEEEEecCCCc----eEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCC
Q 003205 136 VECVFWG-NGVVCVTEANRYFCMADFATM----KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDG 210 (839)
Q Consensus 136 ~~~~~~~-~G~v~~t~~~~~~~v~~~~~~----~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~ 210 (839)
..+.|.. ++.|+...+..++.+.+...+ ...++.. ..+...++.|. ....+++++.|+|.++||...
T Consensus 283 s~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~----kKI~sv~~NP~----~p~~laT~s~D~T~kIWD~R~ 354 (498)
T KOG4328|consen 283 SSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK----KKITSVALNPV----CPWFLATASLDQTAKIWDLRQ 354 (498)
T ss_pred eeccccCCCccEEEeecccceEEEEeecCCccchhhhhhh----cccceeecCCC----CchheeecccCcceeeeehhh
Confidence 4455544 666666655444444433211 1122221 23455555554 567889999999999999885
Q ss_pred cc---------cccCCCceEEEECCCCcEEEEeecCCeEEEEecC-CCC---cccc--cc--CCCCCCCCceeeecCceE
Q 003205 211 VQ---------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN-FSS---PVID--ES--CESALPPEQIAWCGMDSV 273 (839)
Q Consensus 211 ~~---------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd-~~~---~l~e--~~--~~~~~~p~~~~WcG~d~v 273 (839)
.. ..|..+|.+.+|||+|-.|++-+.|.+|.||++. ++. .+++ ++ +..=.+|.+-+|-=++.+
T Consensus 355 l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~l 434 (498)
T KOG4328|consen 355 LRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNL 434 (498)
T ss_pred hcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccE
Confidence 43 2567889999999999999999999999999983 332 2222 22 222346778888776665
Q ss_pred EEE--ecCEEEEEcCCC
Q 003205 274 LLY--WNDMLVMVAPQA 288 (839)
Q Consensus 274 v~~--~~~~l~lig~~~ 288 (839)
+.. +...|-++.+.+
T Consensus 435 i~vg~~~r~IDv~~~~~ 451 (498)
T KOG4328|consen 435 IVVGRYPRPIDVFDGNG 451 (498)
T ss_pred EEEeccCcceeEEcCCC
Confidence 543 334444444333
No 134
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.66 E-value=1.6e-06 Score=99.80 Aligned_cols=215 Identities=13% Similarity=0.110 Sum_probs=148.5
Q ss_pred CCceEEEEcCCCCceeEEEecCC-----CCCeEEEeecCCCeE-EEEEeCCeEEEEeCCCCccccCCCCCccccccCeEE
Q 003205 64 ALRKLRIFNSAGVLISETVWKNP-----GGRLIGMSWSEDQTL-ICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVE 137 (839)
Q Consensus 64 ~~~~I~iy~~~G~ll~ti~~~~~-----~~~I~~~~fs~de~L-v~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~ 137 (839)
.+..+..|+..-+-++....+.. ...+.+++-|+-|.. +++++.|+|-+||++..+...++|.... -...|..
T Consensus 420 ~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a-h~~~V~g 498 (910)
T KOG1539|consen 420 GKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA-HKGEVTG 498 (910)
T ss_pred CcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcc-ccCceeE
Confidence 36678888887777766555441 157899999999998 5889999999999987776666642110 0566888
Q ss_pred EEEECCeEEEEecCC-eEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----
Q 003205 138 CVFWGNGVVCVTEAN-RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---- 212 (839)
Q Consensus 138 ~~~~~~G~v~~t~~~-~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~---- 212 (839)
+..=+.+..+++... -+..+|++++.. .+.+..++..+.+. + ++-.....+++..|-.|.++|.....
T Consensus 499 la~D~~n~~~vsa~~~Gilkfw~f~~k~--l~~~l~l~~~~~~i-v----~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~ 571 (910)
T KOG1539|consen 499 LAVDGTNRLLVSAGADGILKFWDFKKKV--LKKSLRLGSSITGI-V----YHRVSDLLAIALDDFSIRVVDVVTRKVVRE 571 (910)
T ss_pred EEecCCCceEEEccCcceEEEEecCCcc--eeeeeccCCCccee-e----eeehhhhhhhhcCceeEEEEEchhhhhhHH
Confidence 887776655666543 355677776432 23332333333332 1 12244566666677788888877543
Q ss_pred -cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCCce
Q 003205 213 -KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPV 291 (839)
Q Consensus 213 -~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v 291 (839)
.+|.+.|+.++|||||+.|++++.|++|++|+.-.+..+--+ ++.....++
T Consensus 572 f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~----------------------------~vd~~~~sl 623 (910)
T KOG1539|consen 572 FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL----------------------------LVDSPCTSL 623 (910)
T ss_pred hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE----------------------------ecCCcceee
Confidence 579999999999999999999999999999975433332111 111112378
Q ss_pred EeccCCCeEEeecCC--ceEEEccC
Q 003205 292 QYFYDEPLVLIPECD--GVRILSNS 314 (839)
Q Consensus 292 ~f~~~~~~~l~~E~D--GvRIit~~ 314 (839)
+|+++++..+++-+| ||-+|++.
T Consensus 624 s~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 624 SFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred EECCCCCEEEEEEecCceEEEEEch
Confidence 999999999999999 79999997
No 135
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=98.64 E-value=7.4e-07 Score=103.52 Aligned_cols=248 Identities=11% Similarity=0.058 Sum_probs=169.2
Q ss_pred eEEEEcCCCCceeE-EEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEe-CCCCcccc-CCCCCccccccCeEEEEEECC
Q 003205 67 KLRIFNSAGVLISE-TVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYN-IHAELIEP-NASMGKECFEENVVECVFWGN 143 (839)
Q Consensus 67 ~I~iy~~~G~ll~t-i~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~-~~G~~~~~-~~g~~~~~~~~~V~~~~~~~~ 143 (839)
....|+........ ...+. ...+++..|. ++.+++.+.|+++++|+ ..|..... ..|| ..+|+.+.+-..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~-~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH-----~g~V~~l~~~~~ 260 (537)
T KOG0274|consen 188 LSKNWRKLFRRGYKVLLGTD-DHVVLCLQLH-DGFFKSGSDDSTLHLWDLNNGYLILTRLVGH-----FGGVWGLAFPSG 260 (537)
T ss_pred ccccccccccccceeecccC-cchhhhheee-cCeEEecCCCceeEEeecccceEEEeeccCC-----CCCceeEEEecC
Confidence 34456555444322 22222 2678888888 88999999999999997 67887665 8999 889999998866
Q ss_pred eEEEEecCCe-EEEEecCCCceEEE-cCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccC
Q 003205 144 GVVCVTEANR-YFCMADFATMKVCE-LARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDD 216 (839)
Q Consensus 144 G~v~~t~~~~-~~~v~~~~~~~~~~-l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~ 216 (839)
|-.+++++.+ -..||+..+..... |.- -.+...|... .+...+..+.|++|++|+.++.. .+|.
T Consensus 261 ~~~lvsgS~D~t~rvWd~~sg~C~~~l~g--h~stv~~~~~-------~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~ 331 (537)
T KOG0274|consen 261 GDKLVSGSTDKTERVWDCSTGECTHSLQG--HTSSVRCLTI-------DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHT 331 (537)
T ss_pred CCEEEEEecCCcEEeEecCCCcEEEEecC--CCceEEEEEc-------cCceEeeccCCceEEEEeccCcceEEEecccc
Confidence 6667776643 35677766443332 221 1122333332 44556666789999999988543 4589
Q ss_pred CCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeee--------cCceEEEEecCE------EE
Q 003205 217 TLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC--------GMDSVLLYWNDM------LV 282 (839)
Q Consensus 217 ~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~Wc--------G~d~vv~~~~~~------l~ 282 (839)
++|..|..+ +..+.+++.||+|.||+....+.+..+..|. .....+.-- +-|..+..|+-. ..
T Consensus 332 ~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~-~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 332 GPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT-GRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred ccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCc-ceEEEEEecCcceEEeeeeccceEeecCCchhhhhhh
Confidence 999999998 7799999999999999988777776666552 233333222 345667777642 23
Q ss_pred EEcCCCCceEeccCCCeEEeecCCc-eEEEccCcceeeeccch-hhHhhhccC
Q 003205 283 MVAPQAEPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPA-STEQIFAIG 333 (839)
Q Consensus 283 lig~~~~~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~-~~~~vf~ig 333 (839)
+-||.+-.-.....+..++.++.|| ||+|..+..+.++.+.. +...|+..+
T Consensus 409 l~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~ 461 (537)
T KOG0274|consen 409 LQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALA 461 (537)
T ss_pred hcCCcccccccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEee
Confidence 5555544333344577889999999 99999999999999988 445544443
No 136
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.63 E-value=9.8e-07 Score=90.97 Aligned_cols=189 Identities=14% Similarity=0.174 Sum_probs=133.6
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCC--ceeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeEEE
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV--LISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYR 112 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~--ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv~l 112 (839)
..++|-|.|..+++.. ..|++++|+-+-. .++..+-++.-+.|.++.+|+.+.| ++++.||.|++
T Consensus 220 rsiSfHPsGefllvgT------------dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~Ikl 287 (430)
T KOG0640|consen 220 RSISFHPSGEFLLVGT------------DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKL 287 (430)
T ss_pred eeEeecCCCceEEEec------------CCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEe
Confidence 3788999999999886 4799999995432 2333343332278999999999997 89999999999
Q ss_pred Ee-CCCCccc-cCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCceEE-EcCCCCCCC--CCceEEEeCCC
Q 003205 113 YN-IHAELIE-PNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMKVC-ELARPEVEE--LPHCVAVIEPK 186 (839)
Q Consensus 113 ~~-~~G~~~~-~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~~~-~l~~~~~~~--~~~~w~vi~~~ 186 (839)
|| ..+...+ +--.|. ...|.++.|..||..++++..+ +.++|-+...+.. .....+..+ ....-++
T Consensus 288 wDGVS~rCv~t~~~AH~----gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAv---- 359 (430)
T KOG0640|consen 288 WDGVSNRCVRTIGNAHG----GSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAV---- 359 (430)
T ss_pred eccccHHHHHHHHhhcC----CceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhh----
Confidence 96 7777743 333442 4468999999999999998775 5677777654432 222222111 1111222
Q ss_pred CCCCCcEEEEEEe-CCeEEEEecCCcc------cccCCCceEEEECCCCcEEEEeecCCeEEEEe
Q 003205 187 YTMTGSVEVLIGT-DAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (839)
Q Consensus 187 ~S~~~~~~v~~s~-d~tv~l~~~~~~~------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~s 244 (839)
|..+...+++.+. .+.+..||..... .+|++++.-|.=||++.-..+.+.|.....|-
T Consensus 360 FNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 360 FNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred hcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 3335555555554 6678889876442 57999999999999999888889999998885
No 137
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.63 E-value=2.6e-07 Score=103.52 Aligned_cols=184 Identities=13% Similarity=0.130 Sum_probs=132.1
Q ss_pred CCceEEEEcC---CC---Cc-eeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeCC--CCc-cccCCCCCccccc
Q 003205 64 ALRKLRIFNS---AG---VL-ISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIH--AEL-IEPNASMGKECFE 132 (839)
Q Consensus 64 ~~~~I~iy~~---~G---~l-l~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~--G~~-~~~~~g~~~~~~~ 132 (839)
.|++|++|+. ++ ++ +.++.-|. +++.++.-..+++ |++++.|-||++|+.+ +.+ ..+...| .
T Consensus 45 RDg~i~~W~~~~d~~~~s~~~~asme~Hs--DWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H-----~ 117 (735)
T KOG0308|consen 45 RDGIIRLWSVTQDSNEPSTPYIASMEHHS--DWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTH-----K 117 (735)
T ss_pred CCceEEEeccccccCCcccchhhhhhhhH--hHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcc-----c
Confidence 6899999984 33 23 77888888 9999999999885 8999999999999754 324 4555556 4
Q ss_pred cCeEEEEE-ECCeEEEEecCC-eEEEEecCCCceEEE------cCCCCCCCC--CceEEEeCCCCCCCCcEEEEEEeCCe
Q 003205 133 ENVVECVF-WGNGVVCVTEAN-RYFCMADFATMKVCE------LARPEVEEL--PHCVAVIEPKYTMTGSVEVLIGTDAG 202 (839)
Q Consensus 133 ~~V~~~~~-~~~G~v~~t~~~-~~~~v~~~~~~~~~~------l~~~~~~~~--~~~w~vi~~~~S~~~~~~v~~s~d~t 202 (839)
+-|..+.. ..+..+++++.- +-+.+|+++....+. ++..++++. .+.... +-.++|..+|..+.++.
T Consensus 118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL---A~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL---AMNQTGTIIVSGGTEKD 194 (735)
T ss_pred chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee---ecCCcceEEEecCcccc
Confidence 55666665 567778888754 234567676331111 111122212 222332 22337778888888999
Q ss_pred EEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCC
Q 003205 203 ILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCE 257 (839)
Q Consensus 203 v~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~ 257 (839)
+.+||...+. ++|...|..+-+++||..+.+++.||||++|+-.-++++..|..+
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH 254 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVH 254 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEec
Confidence 9999998775 689999999999999999999999999999987767777666555
No 138
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=98.63 E-value=1.1e-06 Score=93.12 Aligned_cols=239 Identities=10% Similarity=0.092 Sum_probs=157.6
Q ss_pred CCeEEEeecCCCeEEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEE---C-CeEEEEecCC-eEEEEecCCC
Q 003205 88 GRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFW---G-NGVVCVTEAN-RYFCMADFAT 162 (839)
Q Consensus 88 ~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~---~-~G~v~~t~~~-~~~~v~~~~~ 162 (839)
+.|-++.-+ .+.+++.+.||++|+|+..|+...+..|| ...|..|... + .+ .+++++. +...+|-++.
T Consensus 106 DWVSsv~~~-~~~IltgsYDg~~riWd~~Gk~~~~~~Gh-----t~~ik~v~~v~~n~~~~-~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 106 DWVSSVKGA-SKWILTGSYDGTSRIWDLKGKSIKTIVGH-----TGPIKSVAWVIKNSSSC-LFVSASMDQTLRLWKWNV 178 (423)
T ss_pred hhhhhhccc-CceEEEeecCCeeEEEecCCceEEEEecC-----CcceeeeEEEecCCccc-eEEEecCCceEEEEEecC
Confidence 455555555 55689999999999999999998889999 5556644331 1 33 3444433 2223333321
Q ss_pred ce--EEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecC-Cc--------------c-------------
Q 003205 163 MK--VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED-GV--------------Q------------- 212 (839)
Q Consensus 163 ~~--~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~-~~--------------~------------- 212 (839)
+. ...+.- -.|+.-..=+| ...++|...+..+.|.++.+|+.. .. +
T Consensus 179 ~~~~~~~~~~-~~GHk~~V~sV---sv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 179 GENKVKALKV-CRGHKRSVDSV---SVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred chhhhhHHhH-hcccccceeEE---EecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 21 111100 01222221122 223499999999999999999911 00 0
Q ss_pred --cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCC------CCCCCceeeec-CceEEEEecC----
Q 003205 213 --KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCES------ALPPEQIAWCG-MDSVLLYWND---- 279 (839)
Q Consensus 213 --~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~------~~~p~~~~WcG-~d~vv~~~~~---- 279 (839)
.+|.++|.+|.+++. ..+.+.+.|.||+.|+-..+....+..++. ..+-..+.=|| .|..+-.|+-
T Consensus 255 tl~GHt~~Vs~V~w~d~-~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~ 333 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSDA-TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD 333 (423)
T ss_pred EecccccceeeEEEcCC-CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCC
Confidence 278899999999996 589999999999999876666555443331 22233555564 6777778852
Q ss_pred ----EEEEEcCCCC--ceEeccCCCe-EEeecCCc-eEEEccCcce-eeeccchhhHhhhccCCCChh
Q 003205 280 ----MLVMVAPQAE--PVQYFYDEPL-VLIPECDG-VRILSNSSME-FLQRVPASTEQIFAIGSTSPA 338 (839)
Q Consensus 280 ----~l~lig~~~~--~v~f~~~~~~-~l~~E~DG-vRIit~~~~~-~l~~Vp~~~~~vf~igS~~pg 338 (839)
...++||.+. .+++.+.+.. +++...|| +|+|.-.+.. -|..+..|-..||.+.=..++
T Consensus 334 gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~ 401 (423)
T KOG0313|consen 334 GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGG 401 (423)
T ss_pred CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCc
Confidence 4679999995 7889887665 57778999 9999987776 777777888888877655553
No 139
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=5.5e-07 Score=101.34 Aligned_cols=239 Identities=16% Similarity=0.192 Sum_probs=158.0
Q ss_pred EEEeecCCCeEEEEEeCCeEEEEe-CCCCccc-cCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCceEEE
Q 003205 91 IGMSWSEDQTLICVVQDGTVYRYN-IHAELIE-PNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKVCE 167 (839)
Q Consensus 91 ~~~~fs~de~Lv~v~~dGtv~l~~-~~G~~~~-~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~~~~ 167 (839)
.-+.|+..+.|++++... |++|+ ..|+... ...+ ++.|..++..++|..++.+.. ..+.+||..+.+ .
T Consensus 181 nlldWss~n~laValg~~-vylW~~~s~~v~~l~~~~------~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k--~ 251 (484)
T KOG0305|consen 181 NLLDWSSANVLAVALGQS-VYLWSASSGSVTELCSFG------EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK--K 251 (484)
T ss_pred hHhhcccCCeEEEEecce-EEEEecCCCceEEeEecC------CCceEEEEECCCCCEEEEeecCCeEEEEehhhcc--c
Confidence 446899666777777665 88996 6777532 2221 457888888888888777643 345667665432 1
Q ss_pred cCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc------cccCCCceEEEECCCCcEEEEeecCCeEE
Q 003205 168 LARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLV 241 (839)
Q Consensus 168 l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~Spng~~iA~~~~~g~i~ 241 (839)
...... +....+.++.= .+..+...+.++.|.++|..-.+ .+|...|..++.|+||+++|.++.|+.+.
T Consensus 252 ~~~~~~-~h~~rvg~laW----~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~ 326 (484)
T KOG0305|consen 252 TRTLRG-SHASRVGSLAW----NSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVF 326 (484)
T ss_pred cccccC-CcCceeEEEec----cCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceE
Confidence 222111 12223444432 45666667779999999877443 56888999999999999999999999999
Q ss_pred EEecCCCCccccccCCCCCCCCceeee------------cCceEEEEecC----EEEEEcCCCC--ceEeccCCCeEEee
Q 003205 242 VNNTNFSSPVIDESCESALPPEQIAWC------------GMDSVLLYWND----MLVMVAPQAE--PVQYFYDEPLVLIP 303 (839)
Q Consensus 242 i~ssd~~~~l~e~~~~~~~~p~~~~Wc------------G~d~vv~~~~~----~l~lig~~~~--~v~f~~~~~~~l~~ 303 (839)
||+..-.+.+..+..+ ....+.|+|| ..|-++..|+. .+--+--.++ ++.|.....-++++
T Consensus 327 Iwd~~~~~p~~~~~~H-~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~st 405 (484)
T KOG0305|consen 327 IWDGLSPEPKFTFTEH-TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLST 405 (484)
T ss_pred eccCCCccccEEEecc-ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEe
Confidence 9998555566566666 5688999999 36677777864 2222222223 56666655434333
Q ss_pred c--CCc-eEEEccCcceeeeccchhhHhhhccCCCChhhhHHHH
Q 003205 304 E--CDG-VRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDA 344 (839)
Q Consensus 304 E--~DG-vRIit~~~~~~l~~Vp~~~~~vf~igS~~pga~L~~A 344 (839)
- .++ |+||.=.+...+..+..|+..|.-..=++.|..++.|
T Consensus 406 hG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~ 449 (484)
T KOG0305|consen 406 HGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTG 449 (484)
T ss_pred cCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEe
Confidence 3 233 8888888788888888888887776666665554443
No 140
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.61 E-value=6.8e-05 Score=85.41 Aligned_cols=159 Identities=15% Similarity=0.116 Sum_probs=84.4
Q ss_pred CeEEEeecCCCeEEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEEC-CeEEEEecCCeEEEEecCCCceEEE
Q 003205 89 RLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWG-NGVVCVTEANRYFCMADFATMKVCE 167 (839)
Q Consensus 89 ~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~~~~~~v~~~~~~~~~~ 167 (839)
.+..+.++|+|+.|+|..||.+.+|+..+--. ...|.. .++.+.+ +-++++..+..+-...|+++.....
T Consensus 34 ~p~~ls~npngr~v~V~g~geY~iyt~~~~r~-k~~G~g--------~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEYEIYTALAWRN-KAFGSG--------LSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEEEEEETTTTEE-EEEEE---------SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT--
T ss_pred CCeeEEECCCCCEEEEEcCCEEEEEEccCCcc-cccCce--------eEEEEecCccEEEEECCCeEEEEEcCccccceE
Confidence 46889999999999999999999998332221 122221 2344444 5556666656555447765333222
Q ss_pred cCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc---cccCCCceEEEECCCCcEEEEeecCCeEEEEe
Q 003205 168 LARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (839)
Q Consensus 168 l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~---~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~s 244 (839)
+.. +.++=.+.. |. ++.+..++.|.++|..... ..+..+|..|..|++|.++|+.+.+ ++.|++
T Consensus 105 i~~-----~~~~~~If~------G~-LL~~~~~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 105 IKL-----PFSVEKIFG------GN-LLGVKSSDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp --------SS-EEEEE-------SS-SEEEEETTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred EcC-----CcccceEEc------Cc-EEEEECCCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 221 111222321 44 4444555679999988654 5555669999999999999999855 777887
Q ss_pred cCCC-----------CccccccCCCCCCCCceeeecC
Q 003205 245 TNFS-----------SPVIDESCESALPPEQIAWCGM 270 (839)
Q Consensus 245 sd~~-----------~~l~e~~~~~~~~p~~~~WcG~ 270 (839)
-++. +.++.. ......+++..|.|+
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~-~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELI-HEISERIKSGCWVED 207 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEE-EEE-S--SEEEEETT
T ss_pred ecchhcccccccCchhceEEE-EEecceeEEEEEEcC
Confidence 6655 111111 111347889999998
No 141
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.59 E-value=9.6e-06 Score=92.37 Aligned_cols=199 Identities=11% Similarity=0.061 Sum_probs=121.3
Q ss_pred cccccccCCCCCC-------CCCEEEEcCCCCe-EEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEE
Q 003205 21 PELYQMRWKHIDL-------SRNKVACAPFGGP-IAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIG 92 (839)
Q Consensus 21 ~e~y~m~w~~~~l-------~~~~va~sp~Gg~-IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~ 92 (839)
.+++-|+++..+. ....-++||+|.- ++..+.+ ..++.|.+++..+.....+.-.. +....
T Consensus 169 ~~l~~~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~---------~~~~~Iyv~dl~tg~~~~lt~~~--g~~~~ 237 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYG---------ERKPTLYKYNLYTGKKEKIASSQ--GMLVV 237 (419)
T ss_pred ceEEEECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEcc---------CCCCEEEEEECCCCcEEEEecCC--CcEEe
Confidence 4777777641110 2235678999985 7766532 13678999998776666665333 66777
Q ss_pred EeecCCCe-EE-EEEeCCe--EEEEeCCCCc-cccCCCCCccccccCeEEEEEECCeE-EEEecCC----eEEEEecCCC
Q 003205 93 MSWSEDQT-LI-CVVQDGT--VYRYNIHAEL-IEPNASMGKECFEENVVECVFWGNGV-VCVTEAN----RYFCMADFAT 162 (839)
Q Consensus 93 ~~fs~de~-Lv-~v~~dGt--v~l~~~~G~~-~~~~~g~~~~~~~~~V~~~~~~~~G~-v~~t~~~----~~~~v~~~~~ 162 (839)
..|||||. ++ +...+|. +.++++.|.- .+..-+. .......++|||. ++++++. ++|.++ +++
T Consensus 238 ~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~------~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~d-l~~ 310 (419)
T PRK04043 238 SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYP------GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKK-LNS 310 (419)
T ss_pred eEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCC------CccCccEECCCCCEEEEEECCCCCceEEEEE-CCC
Confidence 88999996 54 4444544 5555765543 3322211 1123457888883 4445433 566654 444
Q ss_pred ceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeC---------CeEEEEecCCcc--ccc-CCCceEEEECCCCcE
Q 003205 163 MKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTD---------AGILMLDEDGVQ--KVD-DTLSQKMAVSPNGNF 230 (839)
Q Consensus 163 ~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d---------~tv~l~~~~~~~--~~~-~~~i~~ia~Spng~~ 230 (839)
...+++... . . + .+.+||||+.+++.+.. ..|++.+.++.. .+. .+.....++||||+.
T Consensus 311 g~~~rlt~~----g-~-~---~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~ 381 (419)
T PRK04043 311 GSVEQVVFH----G-K-N---NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGS 381 (419)
T ss_pred CCeEeCccC----C-C-c---CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCE
Confidence 555555321 1 1 2 13678899999988863 368888876543 222 223446899999999
Q ss_pred EEEeecCC---eEEEEecC
Q 003205 231 VACFTHDG---RLVVNNTN 246 (839)
Q Consensus 231 iA~~~~~g---~i~i~ssd 246 (839)
|+..+..+ .|++++.|
T Consensus 382 I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 382 IMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred EEEEEccCCcEEEEEEecC
Confidence 99988654 27777766
No 142
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.57 E-value=1e-06 Score=99.42 Aligned_cols=200 Identities=16% Similarity=0.150 Sum_probs=130.0
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC-CceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCe
Q 003205 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-VLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGT 109 (839)
Q Consensus 32 ~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G-~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGt 109 (839)
-+..+.++++|.|..||+.-. +.. ..--.|++|+..- ..+..|+.|+ =.|..|.|||||+ |++|+.|.|
T Consensus 525 GyEv~~l~~s~~gnliASaCK-S~~------~ehAvI~lw~t~~W~~~~~L~~Hs--LTVT~l~FSpdg~~LLsvsRDRt 595 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACK-SSL------KEHAVIRLWNTANWLQVQELEGHS--LTVTRLAFSPDGRYLLSVSRDRT 595 (764)
T ss_pred ceeEEEEEecCCCCEEeehhh-hCC------ccceEEEEEeccchhhhheecccc--eEEEEEEECCCCcEEEEeecCce
Confidence 456789999999999999852 111 1356899999654 4556699998 8999999999998 689999999
Q ss_pred EEEEeCCCCc-ccc----CCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCceEEEcCC---CCCCCCCceE
Q 003205 110 VYRYNIHAEL-IEP----NASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMKVCELAR---PEVEELPHCV 180 (839)
Q Consensus 110 v~l~~~~G~~-~~~----~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~~~~l~~---~~~~~~~~~w 180 (839)
+.+|+..-.. ..+ .-.| ..-|++|.+.|++.-++|.+.+ .+.||.....+...++. +..+...+.-
T Consensus 596 ~sl~~~~~~~~~e~~fa~~k~H-----tRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv 670 (764)
T KOG1063|consen 596 VSLYEVQEDIKDEFRFACLKAH-----TRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAV 670 (764)
T ss_pred EEeeeeecccchhhhhcccccc-----ceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeE
Confidence 9999643221 222 2233 4458899999999989998875 56666654332233332 1222222222
Q ss_pred EEeCCCCCCCCc-EEEEEEeCCeEEEEecC--------Ccc---------cccCCCceEEEECCC----------CcEEE
Q 003205 181 AVIEPKYTMTGS-VEVLIGTDAGILMLDED--------GVQ---------KVDDTLSQKMAVSPN----------GNFVA 232 (839)
Q Consensus 181 ~vi~~~~S~~~~-~~v~~s~d~tv~l~~~~--------~~~---------~~~~~~i~~ia~Spn----------g~~iA 232 (839)
++.+ .+-++.. .++..-..|.|++|... +.- ..+...|.++.++|. +.++|
T Consensus 671 ~~~~-~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la 749 (764)
T KOG1063|consen 671 AYLP-VDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLA 749 (764)
T ss_pred Eeec-cccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEe
Confidence 2222 2222333 44444458899999844 100 244556889999976 23678
Q ss_pred EeecCCeEEEEecC
Q 003205 233 CFTHDGRLVVNNTN 246 (839)
Q Consensus 233 ~~~~~g~i~i~ssd 246 (839)
++++|..++|.+-+
T Consensus 750 ~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 750 VGGDDESVRIFNVD 763 (764)
T ss_pred eecccceeEEeecc
Confidence 88888888887643
No 143
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.55 E-value=5.8e-06 Score=95.02 Aligned_cols=167 Identities=19% Similarity=0.249 Sum_probs=106.2
Q ss_pred CceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEe---CCeEEEEeCCCCccccCCCCCccccccCeEEEEE
Q 003205 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQ---DGTVYRYNIHAELIEPNASMGKECFEENVVECVF 140 (839)
Q Consensus 65 ~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~---dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~ 140 (839)
...|.+|+.+|.-...+.-+. +.+.+..||||++ ++.++. +..+++|++.+...+..... .......++
T Consensus 183 ~~~l~i~D~~g~~~~~lt~~~--~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~-----~g~~~~~~~ 255 (433)
T PRK04922 183 RYALQVADSDGYNPQTILRSA--EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF-----RGINGAPSF 255 (433)
T ss_pred eEEEEEECCCCCCceEeecCC--CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC-----CCCccCceE
Confidence 457999999998777777665 7899999999997 566653 33688889764332211111 112335688
Q ss_pred ECCeEEE-Eec--CC--eEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe-CC--eEEEEecCCcc
Q 003205 141 WGNGVVC-VTE--AN--RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-DA--GILMLDEDGVQ 212 (839)
Q Consensus 141 ~~~G~v~-~t~--~~--~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~-d~--tv~l~~~~~~~ 212 (839)
+++|--+ ++. ++ ++|.+ +..+....++.. ... ...+|.|||||+.++..+. ++ .||.++..+..
T Consensus 256 SpDG~~l~~~~s~~g~~~Iy~~-d~~~g~~~~lt~-----~~~--~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~ 327 (433)
T PRK04922 256 SPDGRRLALTLSRDGNPEIYVM-DLGSRQLTRLTN-----HFG--IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS 327 (433)
T ss_pred CCCCCEEEEEEeCCCCceEEEE-ECCCCCeEECcc-----CCC--CccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 8888533 332 33 45554 455444555432 111 1234678899999988875 33 48888876543
Q ss_pred --c--ccCCCceEEEECCCCcEEEEeecCC---eEEEEecC
Q 003205 213 --K--VDDTLSQKMAVSPNGNFVACFTHDG---RLVVNNTN 246 (839)
Q Consensus 213 --~--~~~~~i~~ia~Spng~~iA~~~~~g---~i~i~ssd 246 (839)
. .........++||||+.||..+.++ .|++|+.+
T Consensus 328 ~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~ 368 (433)
T PRK04922 328 AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS 368 (433)
T ss_pred eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECC
Confidence 2 1223345789999999999987543 48888754
No 144
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.55 E-value=1.3e-05 Score=91.85 Aligned_cols=166 Identities=16% Similarity=0.224 Sum_probs=103.9
Q ss_pred CceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEe-C--CeEEEEeCC-CCccccCCCCCccccccCeEEEE
Q 003205 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQ-D--GTVYRYNIH-AELIEPNASMGKECFEENVVECV 139 (839)
Q Consensus 65 ~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~-d--Gtv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~ 139 (839)
...|.+++.+|.....+..+. +.+.+..|||||+ |+.++. + ..+.+|++. |+..... .. ...+....
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~--~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~-~~-----~g~~~~~~ 246 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSP--EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA-NF-----KGSNSAPA 246 (427)
T ss_pred ccEEEEECCCCCCceEeccCC--CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee-cC-----CCCccceE
Confidence 467999999998877777666 7899999999997 555543 2 358888976 4432211 11 22345678
Q ss_pred EECCeEEE-Eec--CC--eEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeC-C--eEEEEecCCc
Q 003205 140 FWGNGVVC-VTE--AN--RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTD-A--GILMLDEDGV 211 (839)
Q Consensus 140 ~~~~G~v~-~t~--~~--~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d-~--tv~l~~~~~~ 211 (839)
++++|-.+ ++. ++ ++|.++ ..+...+++.. ... ....|.|||||+.+++.+.. + .||.++..+.
T Consensus 247 ~SPDG~~la~~~~~~g~~~Iy~~d-~~~~~~~~lt~-----~~~--~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g 318 (427)
T PRK02889 247 WSPDGRTLAVALSRDGNSQIYTVN-ADGSGLRRLTQ-----SSG--IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG 318 (427)
T ss_pred ECCCCCEEEEEEccCCCceEEEEE-CCCCCcEECCC-----CCC--CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC
Confidence 88888544 333 22 466654 33333444432 111 12346789999999887752 3 5666665543
Q ss_pred c--c--ccCCCceEEEECCCCcEEEEeecCC---eEEEEecC
Q 003205 212 Q--K--VDDTLSQKMAVSPNGNFVACFTHDG---RLVVNNTN 246 (839)
Q Consensus 212 ~--~--~~~~~i~~ia~Spng~~iA~~~~~g---~i~i~ssd 246 (839)
. . .........++||||+.||..+.++ +|++|+.+
T Consensus 319 ~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~ 360 (427)
T PRK02889 319 AAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLA 360 (427)
T ss_pred ceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECC
Confidence 2 1 1222345689999999999887654 47888644
No 145
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.55 E-value=1.8e-05 Score=89.62 Aligned_cols=192 Identities=13% Similarity=0.060 Sum_probs=139.8
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCe
Q 003205 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGT 109 (839)
Q Consensus 32 ~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGt 109 (839)
|-+.-.++.|+.|.+.-+. ..++|.-|| .+|+++-.+.-.. +.|++|+-+|.+. +.+..+||.
T Consensus 69 drsIE~L~W~e~~RLFS~g-------------~sg~i~EwDl~~lk~~~~~d~~g--g~IWsiai~p~~~~l~IgcddGv 133 (691)
T KOG2048|consen 69 DRSIESLAWAEGGRLFSSG-------------LSGSITEWDLHTLKQKYNIDSNG--GAIWSIAINPENTILAIGCDDGV 133 (691)
T ss_pred CCceeeEEEccCCeEEeec-------------CCceEEEEecccCceeEEecCCC--cceeEEEeCCccceEEeecCCce
Confidence 5556678888777766654 479999999 4888888888777 9999999999887 567779994
Q ss_pred EEEEeC-CCCc-cccCCCCCccccccCeEEEEEECCeEEEEecCCeE-EEEecCCCceEEEcCCCC---CC--CCCceEE
Q 003205 110 VYRYNI-HAEL-IEPNASMGKECFEENVVECVFWGNGVVCVTEANRY-FCMADFATMKVCELARPE---VE--ELPHCVA 181 (839)
Q Consensus 110 v~l~~~-~G~~-~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~-~~v~~~~~~~~~~l~~~~---~~--~~~~~w~ 181 (839)
+..++. .|++ ...+++. ...+|.++.+.++|.-+++++-+. +.+|+...+....+.+.. ++ ...-.|.
T Consensus 134 l~~~s~~p~~I~~~r~l~r----q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWS 209 (691)
T KOG2048|consen 134 LYDFSIGPDKITYKRSLMR----QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWS 209 (691)
T ss_pred EEEEecCCceEEEEeeccc----ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEE
Confidence 444443 3333 2334443 157899999999999788876654 678887755433222211 22 2344699
Q ss_pred EeCCCCCCCCcEEEEEEeCCeEEEEecCCc-c----cccCCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 182 VIEPKYTMTGSVEVLIGTDAGILMLDEDGV-Q----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 182 vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~-~----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
|+.- ..++++..+.-|+|..||.... . ..+.+.|..|++++|+..+-+++.|+++.-++..
T Consensus 210 v~~L----rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 210 VLFL----RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLT 275 (691)
T ss_pred EEEe----ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEec
Confidence 8543 4578888999999999997743 3 6788999999999999999999999987766543
No 146
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.55 E-value=6.3e-07 Score=93.29 Aligned_cols=91 Identities=13% Similarity=0.204 Sum_probs=72.8
Q ss_pred CCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCC-e-EEEEEeCCeEEEEeCCCCc-ccc---CCCCCccccccCeE
Q 003205 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQ-T-LICVVQDGTVYRYNIHAEL-IEP---NASMGKECFEENVV 136 (839)
Q Consensus 64 ~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de-~-Lv~v~~dGtv~l~~~~G~~-~~~---~~g~~~~~~~~~V~ 136 (839)
..+.|+|.|. +|+..+.+.+|+ +.|..+.|-|+. + ++++++|-+||+||++... .-. ..|| .+.|+
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG--~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egH-----rdeVL 185 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHG--GSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGH-----RDEVL 185 (385)
T ss_pred ceeEEEEEecchhhhccceeccC--ccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccc-----cCcEE
Confidence 6899999995 788888999999 999999999976 4 4799999999999976443 322 3456 67799
Q ss_pred EEEEECCeEEEEecCCe-EEEEecCC
Q 003205 137 ECVFWGNGVVCVTEANR-YFCMADFA 161 (839)
Q Consensus 137 ~~~~~~~G~v~~t~~~~-~~~v~~~~ 161 (839)
++-|+.+|--+++...+ -..+|.++
T Consensus 186 SvD~~~~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 186 SVDFSLDGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred EEEEcCCCCeeeccCCcceEEEEecC
Confidence 99999999999987663 34455554
No 147
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.55 E-value=5.8e-06 Score=95.28 Aligned_cols=207 Identities=17% Similarity=0.142 Sum_probs=121.0
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EE-EEEeCCe--EE
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LI-CVVQDGT--VY 111 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv-~v~~dGt--v~ 111 (839)
...++||+|..||..+++ ...+.|.+|+..|.....+.... +......|||||+ |+ +...+|. ++
T Consensus 221 ~~p~wSPDG~~La~~s~~---------~g~~~L~~~dl~tg~~~~lt~~~--g~~~~~~wSPDG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 221 MSPAWSPDGRKLAYVSFE---------NRKAEIFVQDIYTQVREKVTSFP--GINGAPRFSPDGKKLALVLSKDGQPEIY 289 (448)
T ss_pred cCceECCCCCEEEEEEec---------CCCcEEEEEECCCCCeEEecCCC--CCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence 357999999999998743 13567999997765544444323 4455789999997 54 4566776 55
Q ss_pred EEeCCCCccccCCCCCccccccCeEEEEEECCeEEE-EecC----CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCC
Q 003205 112 RYNIHAELIEPNASMGKECFEENVVECVFWGNGVVC-VTEA----NRYFCMADFATMKVCELARPEVEELPHCVAVIEPK 186 (839)
Q Consensus 112 l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~-~t~~----~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~ 186 (839)
+|++.+...+....+ ...+....++++|..+ .+++ .++|.++ .++....++.. .. .+ ...+.
T Consensus 290 ~~dl~tg~~~~lt~~-----~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~d-l~~g~~~~Lt~----~g--~~-~~~~~ 356 (448)
T PRK04792 290 VVDIATKALTRITRH-----RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVN-LASGKVSRLTF----EG--EQ-NLGGS 356 (448)
T ss_pred EEECCCCCeEECccC-----CCCccceEECCCCCEEEEEECCCCCceEEEEE-CCCCCEEEEec----CC--CC-CcCee
Confidence 557755432222222 2223456778887544 3332 2455544 34344444431 11 12 23457
Q ss_pred CCCCCcEEEEEEeCC---eEEEEecCCcc--cccCC-CceEEEECCCCcEEEEeecCC---eEEEEecCCCCccccccCC
Q 003205 187 YTMTGSVEVLIGTDA---GILMLDEDGVQ--KVDDT-LSQKMAVSPNGNFVACFTHDG---RLVVNNTNFSSPVIDESCE 257 (839)
Q Consensus 187 ~S~~~~~~v~~s~d~---tv~l~~~~~~~--~~~~~-~i~~ia~Spng~~iA~~~~~g---~i~i~ssd~~~~l~e~~~~ 257 (839)
+||||+.+++.+.++ .|++++.++.. ..... .....++||||+.|++.+.++ .+++++.+ ++........
T Consensus 357 ~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~ 435 (448)
T PRK04792 357 ITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAG 435 (448)
T ss_pred ECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCC
Confidence 888999998887643 56777876543 21211 223458999999998877543 37777765 3333333222
Q ss_pred CCCCCCceeee
Q 003205 258 SALPPEQIAWC 268 (839)
Q Consensus 258 ~~~~p~~~~Wc 268 (839)
...+....|.
T Consensus 436 -~g~~~~p~Ws 445 (448)
T PRK04792 436 -QGEVKSPAWS 445 (448)
T ss_pred -CCCcCCCccC
Confidence 2234455664
No 148
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.53 E-value=1.9e-06 Score=93.85 Aligned_cols=230 Identities=12% Similarity=0.117 Sum_probs=157.5
Q ss_pred CCeEEEeecCCCeEEEEEeCCeEEEEeCCCCccccCCCCCcccc--ccCeEEEEEECCeEEEEecCC-eEEEEecCCCce
Q 003205 88 GRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECF--EENVVECVFWGNGVVCVTEAN-RYFCMADFATMK 164 (839)
Q Consensus 88 ~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~--~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~ 164 (839)
+-|-++..|..-+-|--..-|.|+|||+.+.-.++...+ ..|+ +.-|.+|++.+||-.++++.. .-..||++..|.
T Consensus 420 EvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~Pvsq-Ldcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapT 498 (705)
T KOG0639|consen 420 EVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQ-LDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPT 498 (705)
T ss_pred cEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCcccc-ccccCcccceeeeEecCCCceEEeccccceeeeeeccCCC
Confidence 345556666555556555677899999876544433322 1232 445889999999999999865 346778887665
Q ss_pred EEEcCCCCCC-CCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCC
Q 003205 165 VCELARPEVE-ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDG 238 (839)
Q Consensus 165 ~~~l~~~~~~-~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g 238 (839)
++.=.+ +. ..|.|.+. +.|||.++.+..-.||.|.+||+.+.. .++......|-+|++|-.|=+++-|.
T Consensus 499 prikae--ltssapaCyAL---a~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 499 PRIKAE--LTSSAPACYAL---AISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred cchhhh--cCCcchhhhhh---hcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 432122 22 45788876 344588888888889999999999775 68888999999999999999999999
Q ss_pred eEEEEecCCCCccccccCCCCCCCCceeee-cCceEEEEecC-----------EEEEEcCCCC---ceEeccCCCeEEee
Q 003205 239 RLVVNNTNFSSPVIDESCESALPPEQIAWC-GMDSVLLYWND-----------MLVMVAPQAE---PVQYFYDEPLVLIP 303 (839)
Q Consensus 239 ~i~i~ssd~~~~l~e~~~~~~~~p~~~~Wc-G~d~vv~~~~~-----------~l~lig~~~~---~v~f~~~~~~~l~~ 303 (839)
+++-|+-.-.+.+.+|+..+ ....+..| ..|=+++-.++ +-+.++-... +++|.|-+.-++++
T Consensus 574 tvRcWDlregrqlqqhdF~S--QIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvSt 651 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQHDFSS--QIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVST 651 (705)
T ss_pred ceeehhhhhhhhhhhhhhhh--hheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeec
Confidence 99999876677788887664 55666666 22333332221 2234443333 78898888888888
Q ss_pred cCCc-eEEEccCcceeeeccchh
Q 003205 304 ECDG-VRILSNSSMEFLQRVPAS 325 (839)
Q Consensus 304 E~DG-vRIit~~~~~~l~~Vp~~ 325 (839)
..|. +-.|..--+--+-.+++.
T Consensus 652 GkDnlLnawrtPyGasiFqskE~ 674 (705)
T KOG0639|consen 652 GKDNLLNAWRTPYGASIFQSKES 674 (705)
T ss_pred CchhhhhhccCccccceeecccc
Confidence 8886 666665444444444443
No 149
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.52 E-value=2.5e-06 Score=95.07 Aligned_cols=143 Identities=20% Similarity=0.319 Sum_probs=91.9
Q ss_pred CCeEEEeecC--CCeEEEEEeCCeEEEEeCC-CCccccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCc
Q 003205 88 GRLIGMSWSE--DQTLICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATM 163 (839)
Q Consensus 88 ~~I~~~~fs~--de~Lv~v~~dGtv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~ 163 (839)
..|.+++|.| +++|+++.+||.|++|.+. |.+.+..+. .++|++ .-+ +|+.+.
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~t------Pe~~lt------------~h~eKI~slR----- 684 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMT------PEKILT------------IHGEKITSLR----- 684 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCC------cceeee------------cccceEEEEE-----
Confidence 4677777776 6679999999999999753 222221211 122332 111 222211
Q ss_pred eEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCC
Q 003205 164 KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDG 238 (839)
Q Consensus 164 ~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g 238 (839)
...|+ .++++.+++|.||.+||..... .+|.+.|..++.||+|+.+|+.+.||
T Consensus 685 -fHPLA---------------------advLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg 742 (1012)
T KOG1445|consen 685 -FHPLA---------------------ADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDG 742 (1012)
T ss_pred -ecchh---------------------hhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCc
Confidence 11111 1446667789999999988553 68899999999999999999999999
Q ss_pred eEEEEecCC-CCccccccCCCCCCCCceee-ecCceEEE
Q 003205 239 RLVVNNTNF-SSPVIDESCESALPPEQIAW-CGMDSVLL 275 (839)
Q Consensus 239 ~i~i~ssd~-~~~l~e~~~~~~~~p~~~~W-cG~d~vv~ 275 (839)
+|.|+...- .+.+.|=++-....---+.| |....+++
T Consensus 743 ~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv 781 (1012)
T KOG1445|consen 743 TLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIV 781 (1012)
T ss_pred eEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEE
Confidence 999998542 33454544332334457888 55555554
No 150
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.52 E-value=6.6e-06 Score=93.95 Aligned_cols=188 Identities=18% Similarity=0.194 Sum_probs=115.5
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EE-EEEeCC--eE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LI-CVVQDG--TV 110 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv-~v~~dG--tv 110 (839)
....++||+|..||..... ...+.|.+|+..+.....+.-.. +.+.++.|+||++ ++ +...+| .+
T Consensus 192 ~~~p~~Spdg~~la~~~~~---------~~~~~i~v~d~~~g~~~~~~~~~--~~~~~~~~spDg~~l~~~~~~~~~~~i 260 (417)
T TIGR02800 192 ILSPAWSPDGQKLAYVSFE---------SGKPEIYVQDLATGQREKVASFP--GMNGAPAFSPDGSKLAVSLSKDGNPDI 260 (417)
T ss_pred eecccCCCCCCEEEEEEcC---------CCCcEEEEEECCCCCEEEeecCC--CCccceEECCCCCEEEEEECCCCCccE
Confidence 3456899999999988632 13478999997765444554444 6677899999997 54 334444 47
Q ss_pred EEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEE-ecC----CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCC
Q 003205 111 YRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCV-TEA----NRYFCMADFATMKVCELARPEVEELPHCVAVIEP 185 (839)
Q Consensus 111 ~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~-t~~----~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~ 185 (839)
++|++.+...+....+ ...+....++++|..++ +++ .++|.++ ..+....++.. ... + ...+
T Consensus 261 ~~~d~~~~~~~~l~~~-----~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d-~~~~~~~~l~~----~~~--~-~~~~ 327 (417)
T TIGR02800 261 YVMDLDGKQLTRLTNG-----PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMD-ADGGEVRRLTF----RGG--Y-NASP 327 (417)
T ss_pred EEEECCCCCEEECCCC-----CCCCCCEEECCCCCEEEEEECCCCCceEEEEE-CCCCCEEEeec----CCC--C-ccCe
Confidence 7778765432222222 11223456778875443 332 2566554 44444444432 111 1 2344
Q ss_pred CCCCCCcEEEEEEeCC---eEEEEecCCcc--c-ccCCCceEEEECCCCcEEEEeecCC---eEEEEecC
Q 003205 186 KYTMTGSVEVLIGTDA---GILMLDEDGVQ--K-VDDTLSQKMAVSPNGNFVACFTHDG---RLVVNNTN 246 (839)
Q Consensus 186 ~~S~~~~~~v~~s~d~---tv~l~~~~~~~--~-~~~~~i~~ia~Spng~~iA~~~~~g---~i~i~ssd 246 (839)
.+||+|..+++.+.++ .|++++..+.. . .........++||||++|++.+.++ .+++.+.+
T Consensus 328 ~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 328 SWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred EECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 6788999999988866 78999877543 1 1122345678999999998887755 36666655
No 151
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.51 E-value=7.1e-06 Score=89.76 Aligned_cols=185 Identities=16% Similarity=0.183 Sum_probs=121.5
Q ss_pred CceEEEEcCCCCceeEEEecCCCCCeEEEeecCCC-eEEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEECC
Q 003205 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQ-TLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGN 143 (839)
Q Consensus 65 ~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de-~Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~ 143 (839)
.+.|--=+..+..--+...|. +.+.+++-.|+. ++++...|+++++|+ +.-...+.-- ++.+..+-|.|.
T Consensus 348 rN~iL~Gt~~~~f~~~v~gh~--delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~-----~d~~~~~~fhps 418 (626)
T KOG2106|consen 348 RNFILQGTLENGFTLTVQGHG--DELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII-----EDPAECADFHPS 418 (626)
T ss_pred cceEEEeeecCCceEEEEecc--cceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe-----cCceeEeeccCc
Confidence 455544343333344456777 789999999965 579999999999998 2222222211 345677899999
Q ss_pred eEEEEec-CCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecC--Ccc-----ccc
Q 003205 144 GVVCVTE-ANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED--GVQ-----KVD 215 (839)
Q Consensus 144 G~v~~t~-~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~--~~~-----~~~ 215 (839)
|.+++-. .++ |.|-|.+......+-. .+.+.++ | .|||+|.+++..+.|+.||++..+ |.. +.+
T Consensus 419 g~va~Gt~~G~-w~V~d~e~~~lv~~~~--d~~~ls~--v---~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~ 490 (626)
T KOG2106|consen 419 GVVAVGTATGR-WFVLDTETQDLVTIHT--DNEQLSV--V---RYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCS 490 (626)
T ss_pred ceEEEeeccce-EEEEecccceeEEEEe--cCCceEE--E---EEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeec
Confidence 9443332 444 4454555444444322 1123332 2 688899999999999998887544 543 345
Q ss_pred CCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEE
Q 003205 216 DTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVL 274 (839)
Q Consensus 216 ~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv 274 (839)
..||+++-+|+|++++..-+.|-.|..|... +.... ...++|.|-.+.|++
T Consensus 491 gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~------~~~~~--ts~kDvkW~t~~c~l 541 (626)
T KOG2106|consen 491 GSPITHLDWSSDSQFLVSNSGDYEILYWKPS------ECKQI--TSVKDVKWATYTCTL 541 (626)
T ss_pred CceeEEeeecCCCceEEeccCceEEEEEccc------cCccc--ceecceeeeeeEEEE
Confidence 5899999999999999999988889899433 11111 137899998665543
No 152
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.51 E-value=4.5e-06 Score=86.30 Aligned_cols=163 Identities=13% Similarity=0.173 Sum_probs=121.6
Q ss_pred ceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCCe-
Q 003205 77 LISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR- 153 (839)
Q Consensus 77 ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~- 153 (839)
++..+.+|. +.|++-.|-..|+ .|+++-|.|..+||. .|+......|| +.....|.-.|+--.++|++.+
T Consensus 264 Pl~~ltgH~--~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGH-----d~ELtHcstHptQrLVvTsSrDt 336 (481)
T KOG0300|consen 264 PLMRLTGHR--AVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGH-----DSELTHCSTHPTQRLVVTSSRDT 336 (481)
T ss_pred eeeeeeccc--cceEehhhhcCcceeeeeeccccceeeeeccCceeccccCc-----chhccccccCCcceEEEEeccCc
Confidence 566788888 9999999999886 689999999999996 68888889999 5567788889988888888776
Q ss_pred EEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCC
Q 003205 154 YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNG 228 (839)
Q Consensus 154 ~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng 228 (839)
-+.+|+|.+ ...... ...+++...-.+ .|. .+..+|..+.|.||++|++.+.. .-...|++++++|--+
T Consensus 337 TFRLWDFRe-aI~sV~-VFQGHtdtVTS~---vF~-~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~ 410 (481)
T KOG0300|consen 337 TFRLWDFRE-AIQSVA-VFQGHTDTVTSV---VFN-TDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGH 410 (481)
T ss_pred eeEeccchh-hcceee-eecccccceeEE---EEe-cCCceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCC
Confidence 578888752 111111 011222222212 222 45668888999999999998765 2356789999999999
Q ss_pred cEEEEeecCCeEEEEecCCCCcccc
Q 003205 229 NFVACFTHDGRLVVNNTNFSSPVID 253 (839)
Q Consensus 229 ~~iA~~~~~g~i~i~ssd~~~~l~e 253 (839)
..||+-.++..+.+++-+ +.-+..
T Consensus 411 ~iIAiPhDNRqvRlfDln-G~RlaR 434 (481)
T KOG0300|consen 411 PIIAIPHDNRQVRLFDLN-GNRLAR 434 (481)
T ss_pred ceEEeccCCceEEEEecC-CCcccc
Confidence 999999988889999766 333433
No 153
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.51 E-value=1.3e-06 Score=95.86 Aligned_cols=160 Identities=15% Similarity=0.167 Sum_probs=117.3
Q ss_pred cCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEE
Q 003205 63 SALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFW 141 (839)
Q Consensus 63 ~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~ 141 (839)
+.|+.+.|-|.+|+.=.++..|. +.+.+=.|+|||. |+++.+||.|++|+..|-+..+..-. ++.|.+++.-
T Consensus 82 s~DGkf~il~k~~rVE~sv~AH~--~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~-----~~~v~c~~W~ 154 (737)
T KOG1524|consen 82 SNDGRFVILNKSARVERSISAHA--AAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQN-----EESIRCARWA 154 (737)
T ss_pred cCCceEEEecccchhhhhhhhhh--hhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhc-----CceeEEEEEC
Confidence 46899999999999999999999 9999999999998 99999999999999999886655544 5567766643
Q ss_pred C-CeEEEEecCCeEEEEecCCCceEEEcCCCCCCCCCceEE-----EeCCCCCCCCcEEEEEEeCCeEEEEecCCcc---
Q 003205 142 G-NGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVA-----VIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--- 212 (839)
Q Consensus 142 ~-~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~-----vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~--- 212 (839)
| ..-++.+..++++. ..+. ++ ..+.-|- |+.-++|+..+.++..+.|-..++||..|..
T Consensus 155 p~S~~vl~c~g~h~~I-KpL~-~n----------~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~ 222 (737)
T KOG1524|consen 155 PNSNSIVFCQGGHISI-KPLA-AN----------SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFT 222 (737)
T ss_pred CCCCceEEecCCeEEE-eecc-cc----------cceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccccc
Confidence 4 55566677777653 2111 10 1222231 3444677788888888888888888888753
Q ss_pred -c-----------------------------ccCCCceEEEECCCCcEEEEeecCCeEE
Q 003205 213 -K-----------------------------VDDTLSQKMAVSPNGNFVACFTHDGRLV 241 (839)
Q Consensus 213 -~-----------------------------~~~~~i~~ia~Spng~~iA~~~~~g~i~ 241 (839)
. ...|.|..++.||||..+|.++.+|.+.
T Consensus 223 S~~~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 223 SAAEEYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred CChhccceeeeeeccccceeeeeeeeeeecCCCccceEEEEEcCCCceeeccccCceEE
Confidence 1 2345677788888888888888888643
No 154
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.50 E-value=4.4e-05 Score=79.69 Aligned_cols=158 Identities=18% Similarity=0.285 Sum_probs=99.1
Q ss_pred CceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEECC
Q 003205 65 LRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGN 143 (839)
Q Consensus 65 ~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~ 143 (839)
.+.+-||+ .....+.++... ++|.++.++ -+++|+|.++ ++++|++.-++.+ ..+.+.+-.|.
T Consensus 74 pNkviIWDD~k~~~i~el~f~---~~I~~V~l~-r~riVvvl~~-~I~VytF~~n~k~-----------l~~~et~~NPk 137 (346)
T KOG2111|consen 74 PNKVIIWDDLKERCIIELSFN---SEIKAVKLR-RDRIVVVLEN-KIYVYTFPDNPKL-----------LHVIETRSNPK 137 (346)
T ss_pred CceEEEEecccCcEEEEEEec---cceeeEEEc-CCeEEEEecC-eEEEEEcCCChhh-----------eeeeecccCCC
Confidence 67888998 567788888875 689999998 4467777766 5889986644311 11222233344
Q ss_pred eEEEEecCC--eEEEEecCCCceE-------------EEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEE-EEe
Q 003205 144 GVVCVTEAN--RYFCMADFATMKV-------------CELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGIL-MLD 207 (839)
Q Consensus 144 G~v~~t~~~--~~~~v~~~~~~~~-------------~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~-l~~ 207 (839)
|+..+.-.. .+....+.....+ ..++. =++.+.|.+..- +|..++++|..||+. +||
T Consensus 138 GlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A--H~s~Iacv~Ln~-----~Gt~vATaStkGTLIRIFd 210 (346)
T KOG2111|consen 138 GLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINA--HDSDIACVALNL-----QGTLVATASTKGTLIRIFD 210 (346)
T ss_pred ceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEc--ccCceeEEEEcC-----CccEEEEeccCcEEEEEEE
Confidence 433333211 1111122211111 11111 014456665433 899999999999875 567
Q ss_pred cC-Ccc------cccCCCceEEEECCCCcEEEEeecCCeEEEEec
Q 003205 208 ED-GVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNT 245 (839)
Q Consensus 208 ~~-~~~------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ss 245 (839)
.. |.. ......|..|+||||+.++|..++.||++|.+.
T Consensus 211 t~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 211 TEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred cCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence 55 332 345667999999999999999999999999874
No 155
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.49 E-value=9.8e-06 Score=93.09 Aligned_cols=187 Identities=16% Similarity=0.173 Sum_probs=114.3
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EE-EEEeCCe--EE
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LI-CVVQDGT--VY 111 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv-~v~~dGt--v~ 111 (839)
...++||+|..||..+++ ...+.|.+|+..+.....+.... +.+....|||||+ |+ +...+|. ++
T Consensus 202 ~~p~wSpDG~~la~~s~~---------~~~~~l~~~~l~~g~~~~l~~~~--g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFE---------QKRPRIFVQNLDTGRREQITNFE--GLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred eeeeECCCCCEEEEEEcC---------CCCCEEEEEECCCCCEEEccCCC--CCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 456899999999998743 13578999998766555554333 5566789999997 44 4555664 66
Q ss_pred EEeCCCCccccCCCCCccccccCeEEEEEECCeEE-EEecC----CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCC
Q 003205 112 RYNIHAELIEPNASMGKECFEENVVECVFWGNGVV-CVTEA----NRYFCMADFATMKVCELARPEVEELPHCVAVIEPK 186 (839)
Q Consensus 112 l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v-~~t~~----~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~ 186 (839)
+|++.+.-.+....+ ...+....++++|-- +.+++ .++|.++ ..+....++.. ..... ..|.
T Consensus 271 ~~d~~~~~~~~lt~~-----~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d-~~~g~~~~lt~----~~~~~---~~~~ 337 (430)
T PRK00178 271 VMDLASRQLSRVTNH-----PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVN-VNGGRAERVTF----VGNYN---ARPR 337 (430)
T ss_pred EEECCCCCeEEcccC-----CCCcCCeEECCCCCEEEEEECCCCCceEEEEE-CCCCCEEEeec----CCCCc---cceE
Confidence 668765442222222 222345677777753 33332 2466544 44444444432 11111 2356
Q ss_pred CCCCCcEEEEEEeCC---eEEEEecCCcc--cc-cCCCceEEEECCCCcEEEEeecCC---eEEEEecC
Q 003205 187 YTMTGSVEVLIGTDA---GILMLDEDGVQ--KV-DDTLSQKMAVSPNGNFVACFTHDG---RLVVNNTN 246 (839)
Q Consensus 187 ~S~~~~~~v~~s~d~---tv~l~~~~~~~--~~-~~~~i~~ia~Spng~~iA~~~~~g---~i~i~ssd 246 (839)
+||||+.+++.+.++ .|++++..+.. .. +.......++||||+.|+..+.++ .|++++.+
T Consensus 338 ~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 338 LSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred ECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 788999999887643 57888877543 11 112234568999999999887643 47777665
No 156
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.47 E-value=2.7e-07 Score=104.42 Aligned_cols=170 Identities=12% Similarity=0.120 Sum_probs=129.8
Q ss_pred CCceEEEEcCC-CCceeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEE
Q 003205 64 ALRKLRIFNSA-GVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVF 140 (839)
Q Consensus 64 ~~~~I~iy~~~-G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~ 140 (839)
.+..+-+|+.. =..+.++.+|. +.|-++.|.++|.| +.++.+|||++||+ .++...+..|| ...+..+.|
T Consensus 48 ~~~k~~L~~i~kp~~i~S~~~he--spIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh-----~~~~~sv~f 120 (825)
T KOG0267|consen 48 EDEKVNLWAIGKPNAITSLTGHE--SPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGH-----LLNITSVDF 120 (825)
T ss_pred CceeeccccccCCchhheeeccC--CcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhcc-----ccCcceeee
Confidence 35556677632 23455678888 99999999999986 68899999999997 57778889999 566788889
Q ss_pred ECCeEEEEecCCeE-EEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cc
Q 003205 141 WGNGVVCVTEANRY-FCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KV 214 (839)
Q Consensus 141 ~~~G~v~~t~~~~~-~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~ 214 (839)
.|.|...+.++.+- +.+|++...-+... . .. +.|.|....|||+|...+..+.|+++.+||..... ..
T Consensus 121 ~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~----~-~s-~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~ 194 (825)
T KOG0267|consen 121 HPYGEFFASGSTDTDLKIWDIRKKGCSHT----Y-KS-HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS 194 (825)
T ss_pred ccceEEeccccccccceehhhhccCceee----e-cC-CcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc
Confidence 99999987765442 45665531111111 1 12 66777667899999999999999999999986332 45
Q ss_pred cCCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 215 DDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 215 ~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
|.+++..+-|.|..=++|.++.|+++.+|+-.
T Consensus 195 ~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 195 HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred ccccccccccCchhhhhccCCCCceeeeeccc
Confidence 77899999999998899999999999999643
No 157
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.46 E-value=9.3e-07 Score=95.71 Aligned_cols=222 Identities=13% Similarity=0.123 Sum_probs=153.9
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeE
Q 003205 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTV 110 (839)
Q Consensus 32 ~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv 110 (839)
++.-|.+-.+.+|..+++.. .++-+--|| -+++|+..|... ..|.++.|-++++++.|.+..-+
T Consensus 129 eFGPY~~~ytrnGrhlllgG------------rKGHlAa~Dw~t~~L~~Ei~v~---Etv~Dv~~LHneq~~AVAQK~y~ 193 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGG------------RKGHLAAFDWVTKKLHFEINVM---ETVRDVTFLHNEQFFAVAQKKYV 193 (545)
T ss_pred ccCCeeeeecCCccEEEecC------------Cccceeeeecccceeeeeeehh---hhhhhhhhhcchHHHHhhhhceE
Confidence 56678999999999999876 578888888 688999988764 68999999999998666666668
Q ss_pred EEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCceEEEcCCCCCC-CCCceEEEeCCCCC
Q 003205 111 YRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMKVCELARPEVE-ELPHCVAVIEPKYT 188 (839)
Q Consensus 111 ~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~-~~~~~w~vi~~~~S 188 (839)
++||-.|..+.-... ..+|....|-|.-+.+++.+.. +....++.... ..++...+ +....+..+|
T Consensus 194 yvYD~~GtElHClk~------~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk--lVa~~~t~~G~~~vm~qNP---- 261 (545)
T KOG1272|consen 194 YVYDNNGTELHCLKR------HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK--LVASIRTGAGRTDVMKQNP---- 261 (545)
T ss_pred EEecCCCcEEeehhh------cCchhhhcccchhheeeecccCCceEEEeechhh--hhHHHHccCCccchhhcCC----
Confidence 899988876543332 3456777888888888887654 33445554222 22222222 2233343333
Q ss_pred CCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecC-CCCccccccCCCCCCC
Q 003205 189 MTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN-FSSPVIDESCESALPP 262 (839)
Q Consensus 189 ~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd-~~~~l~e~~~~~~~~p 262 (839)
-+.++.+...+|+|-+|+.+... .-|.+||.+|++.|+|+++|+.+.|..++||+.- |.+.. .+.+ ....
T Consensus 262 -~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~-t~~t--p~~a 337 (545)
T KOG1272|consen 262 -YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH-TYRT--PHPA 337 (545)
T ss_pred -ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccc-eeec--CCCc
Confidence 55677778889999999999875 4689999999999999999999999999999843 44332 2222 1233
Q ss_pred CceeeecCceEEEEecCEEEEE
Q 003205 263 EQIAWCGMDSVLLYWNDMLVMV 284 (839)
Q Consensus 263 ~~~~WcG~d~vv~~~~~~l~li 284 (839)
..+..+.-.-+++.|.+-+.+.
T Consensus 338 ~~ls~SqkglLA~~~G~~v~iw 359 (545)
T KOG1272|consen 338 SNLSLSQKGLLALSYGDHVQIW 359 (545)
T ss_pred cccccccccceeeecCCeeeee
Confidence 3444544444555555544433
No 158
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.43 E-value=6.9e-06 Score=84.92 Aligned_cols=194 Identities=20% Similarity=0.229 Sum_probs=126.5
Q ss_pred cCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeEEEEeC--CCCccc------cCCCCCccc--
Q 003205 63 SALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNI--HAELIE------PNASMGKEC-- 130 (839)
Q Consensus 63 ~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv~l~~~--~G~~~~------~~~g~~~~~-- 130 (839)
+.|.+.+||+ -+|.-|.+..+|. |.|.++.|.+.|.| ++++.|+|..+|.. +-+..+ .+-..+.|+
T Consensus 167 SADhTA~iWs~Esg~CL~~Y~GH~--GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sD 244 (481)
T KOG0300|consen 167 SADHTARIWSLESGACLATYTGHT--GSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSD 244 (481)
T ss_pred ccccceeEEeeccccceeeecccc--cceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccc
Confidence 4799999999 5899999999999 99999999999997 69999999999952 111100 000000000
Q ss_pred ----------c---------------ccCeEEEEEE-CCeEEEEecCCe-EEEEecCCCceEE-EcCCCCCCCCCceEEE
Q 003205 131 ----------F---------------EENVVECVFW-GNGVVCVTEANR-YFCMADFATMKVC-ELARPEVEELPHCVAV 182 (839)
Q Consensus 131 ----------~---------------~~~V~~~~~~-~~G~v~~t~~~~-~~~v~~~~~~~~~-~l~~~~~~~~~~~w~v 182 (839)
. ...|..|.=| ..|..++|.+.+ -..+|+++...+. .|... .....|| .
T Consensus 245 e~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGH-d~ELtHc--s 321 (481)
T KOG0300|consen 245 EHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGH-DSELTHC--S 321 (481)
T ss_pred ccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCc-chhcccc--c
Confidence 0 1111122223 367777777664 3455666543322 22210 0011232 2
Q ss_pred eCCCCCCCCcEEEEEEeCCeEEEEecCCcc------cccCCCceEEEECCCCcEEEEeecCCeEEEEec-CCCCcccccc
Q 003205 183 IEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNT-NFSSPVIDES 255 (839)
Q Consensus 183 i~~~~S~~~~~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ss-d~~~~l~e~~ 255 (839)
-.| +....|..+.|.|..+||....- .+|...|+++.|.-+. .+.++++|.|++||+- ++...|....
T Consensus 322 tHp----tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR 396 (481)
T KOG0300|consen 322 THP----TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR 396 (481)
T ss_pred cCC----cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee
Confidence 223 66788888899999999988542 6888999999999885 7889999999999983 4667776665
Q ss_pred CCCCCCCCceeee
Q 003205 256 CESALPPEQIAWC 268 (839)
Q Consensus 256 ~~~~~~p~~~~Wc 268 (839)
+++ +..-++-|
T Consensus 397 tdS--~~NRvavs 407 (481)
T KOG0300|consen 397 TDS--PANRVAVS 407 (481)
T ss_pred cCC--ccceeEee
Confidence 553 44444444
No 159
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.42 E-value=7.7e-06 Score=97.79 Aligned_cols=187 Identities=17% Similarity=0.250 Sum_probs=122.2
Q ss_pred EcCCCCceeEEEecCCCCCeEEEeecCCC-e-EEEEEeCCeEEEEeC---CCCc------cccCCCCCccccccCeEEE-
Q 003205 71 FNSAGVLISETVWKNPGGRLIGMSWSEDQ-T-LICVVQDGTVYRYNI---HAEL------IEPNASMGKECFEENVVEC- 138 (839)
Q Consensus 71 y~~~G~ll~ti~~~~~~~~I~~~~fs~de-~-Lv~v~~dGtv~l~~~---~G~~------~~~~~g~~~~~~~~~V~~~- 138 (839)
|+..|.++.++--|. +.+..++-++++ . ++++++|||||+|+. .|+. .+++. . ...|..+
T Consensus 1034 W~p~G~lVAhL~Ehs--~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~-----~sr~~~vt 1105 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHS--SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-E-----GSRVEKVT 1105 (1431)
T ss_pred CCccceEeehhhhcc--ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-c-----CCceEEEE
Confidence 999999999999888 888899999876 4 589999999999974 3442 22221 1 3334444
Q ss_pred -EEECCeEEEEecCCeE--EEEecCCCce----EEEcCCCCCCCCCceEEEeCCCCCCCCc-EEEEEEeCCeEEEEecCC
Q 003205 139 -VFWGNGVVCVTEANRY--FCMADFATMK----VCELARPEVEELPHCVAVIEPKYTMTGS-VEVLIGTDAGILMLDEDG 210 (839)
Q Consensus 139 -~~~~~G~v~~t~~~~~--~~v~~~~~~~----~~~l~~~~~~~~~~~w~vi~~~~S~~~~-~~v~~s~d~tv~l~~~~~ 210 (839)
..|++-+++.|.+|.+ ..++..+.+. ..+.+ ++...+..-....+. .-+++ +++.+...+.|..||...
T Consensus 1106 ~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~--n~~~~g~vv~m~a~~-~~~~S~~lvy~T~~~~iv~~D~r~ 1182 (1431)
T KOG1240|consen 1106 MCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIP--NLKKDGVVVSMHAFT-AIVQSHVLVYATDLSRIVSWDTRM 1182 (1431)
T ss_pred eccCCCeEEEEcCCCeEEEEEccccccccceeeeeecc--cccCCCceEEeeccc-ccccceeEEEEEeccceEEecchh
Confidence 4456777777777754 3344322221 11122 121111111111111 11334 667777788899999875
Q ss_pred cc-------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeee
Q 003205 211 VQ-------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC 268 (839)
Q Consensus 211 ~~-------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~Wc 268 (839)
.. ....|-|++++++|-|..++++|..|.+-+|+--|+..++++.-....++..|.=|
T Consensus 1183 ~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~ 1247 (1431)
T KOG1240|consen 1183 RHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLC 1247 (1431)
T ss_pred hhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEee
Confidence 43 45678899999999999999999999999999999999988765434344444333
No 160
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=98.41 E-value=6.8e-06 Score=88.47 Aligned_cols=271 Identities=18% Similarity=0.223 Sum_probs=183.3
Q ss_pred hhhccCchHHHHHHHHHcCCchHHHHHHHHHHhhCChh-HHHHHHhcChhHHHHHHHHHHh-cCHHHHHHHHHhcCChhH
Q 003205 538 LLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPAL-EFFGMIQTRPLACDLFTVYARC-YKHEFLKDFFLSTGQLQE 615 (839)
Q Consensus 538 lLl~~~~~~~AL~~Ai~S~D~dLI~~vll~l~~~l~~~-~f~~~l~~~p~a~~~~~~y~~~-~~~~~L~~~~~~~~~~~e 615 (839)
-|..+.+-=..+++|+.-.|...|-.|++|+++.++.+ +|...+....+|..+|..+.++ .+.+.+.+.|+-.++..+
T Consensus 207 al~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~kee 286 (554)
T KOG4677|consen 207 ALRSLQDKLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEE 286 (554)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 45555555566788889999999999999999999987 4444787888999999999976 677888899998888889
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHH-HHh------------
Q 003205 616 VAFLLWKESWELGKNPMASNGSALHGPRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHE-LEV------------ 682 (839)
Q Consensus 616 ~a~~~l~~~~~~~~~~~~~~~~~~~~~k~~~L~~a~~~~~~~~~~~f~~~~~~~~~~Ll~~Q~~-Le~------------ 682 (839)
++..+.++..-..+.+ .-...+.++.+.....--. ++ +..-++.|.-+|+-|.. +|.
T Consensus 287 L~~s~~~e~~i~qs~~------kstas~~E~ee~rve~~~s-~e---d~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q 356 (554)
T KOG4677|consen 287 LALSHYREHLIIQSPD------KSTASRKEFEETRVELPFS-AE---DSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQ 356 (554)
T ss_pred HHHHHHHHhhccCCCC------cchhHHHHHHHHHhccccc-HH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHH
Confidence 9888877655433322 0001233333333221100 00 11122233333322222 111
Q ss_pred ---hhcc-ccccCCCH-HHHHHHHHHc-----CCcchHHhHHhHcCCChHHHHHHHHHHHHhCCChhH-HHHhhcc----
Q 003205 683 ---STKQ-AIFVDSSI-SDTIRTCIVL-----GNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDA-LERFSKE---- 747 (839)
Q Consensus 683 ---~~~~-~~f~~~Sl-~~ti~~l~~~-----~~~k~a~~l~k~fkvsdkr~~~~kl~ala~~~~w~~-L~~f~~~---- 747 (839)
.+.. ..+..+.. -++-+.|.+. |..-...++++.+||+||++-..|+.+-.+.+.|++ -......
T Consensus 357 ~~~~h~~ka~~~~~~~~l~~~~ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~r~~~~s~~~l~~~~~qL 436 (554)
T KOG4677|consen 357 IFRKHPRKASILNMPLVLTLFYECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLKLRAWNDSVDALFTTKNQL 436 (554)
T ss_pred HHHhhhHhhhhhhchHHHHHHHHHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHHHHhhhhhHHHHhchhHHH
Confidence 1111 13444544 5666677764 233456778999999999999999999999999988 3333321
Q ss_pred ----CCCCCCchHHHHHHHhcCCHHH-HHHhhccCCCHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 003205 748 ----KRPPIGYRPFVEACVDADEKGE-ALKYIPKLVDPRERAEAYARIGMAKEAADAASQAKDGELLGRLKLTFAQ 818 (839)
Q Consensus 748 ----KKspIgyepfv~~~~~~~~~~e-a~~yI~~i~d~~~r~~~~~~~~~~~~A~~~a~~~kd~~~L~~i~~~~~~ 818 (839)
+.-+||.+.+++...+.+.+-| ..+|++.+.+..-++...-+-.+..-.+......+|...+...+.++-.
T Consensus 437 t~tl~qkq~~le~v~~~~~~ln~~lerLq~~~N~~~~v~~~~~~n~~~~~~~~v~~l~~d~~~~~q~r~a~s~VD~ 512 (554)
T KOG4677|consen 437 TYTLKQKQIGLERVVEILHKLNAPLERLQEYVNLVEDVDTKLNLNTKFKCHDVVIDLYRDLKDRQQLRAARSKVDK 512 (554)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhccccccceeeccCCCcccccccchHhhhhhhhHHHHHHHhhcch
Confidence 4579999999999999999977 7899998887777777777777777777777777776555555555543
No 161
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.40 E-value=3.4e-05 Score=81.94 Aligned_cols=211 Identities=14% Similarity=0.179 Sum_probs=135.2
Q ss_pred ceEEEEcCCCCce-eEEEecCCCCCeEEEeecCCCeEEEEEeCCe--EEEEeCC-CC-ccccCCCCCccccccCeEEEEE
Q 003205 66 RKLRIFNSAGVLI-SETVWKNPGGRLIGMSWSEDQTLICVVQDGT--VYRYNIH-AE-LIEPNASMGKECFEENVVECVF 140 (839)
Q Consensus 66 ~~I~iy~~~G~ll-~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGt--v~l~~~~-G~-~~~~~~g~~~~~~~~~V~~~~~ 140 (839)
.--++|+.+-... .+..-.+ ..|+.|=|| ..-+++|+.+.. .+++++. +. +-...+++ .|.++++
T Consensus 26 ~Gyk~~~~~~~~k~~~~~~~~--~~IvEmLFS-SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt-------~IL~Vrm 95 (391)
T KOG2110|consen 26 DGYKIFSCSPFEKCFSKDTEG--VSIVEMLFS-SSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPT-------SILAVRM 95 (391)
T ss_pred CceeEEecCchHHhhcccCCC--eEEEEeecc-cceeEEEecCCCceEEEEEcccCceEEEEecCC-------ceEEEEE
Confidence 4467887654333 2222222 479999998 444555555544 7778754 22 24445544 5899999
Q ss_pred ECCeEEEEecCCeEEEEecCCCceEEEcCCCCCC-CCCceEEEeCCCCCCCCcEEEEEEe--CCeEEEEecCCcc-----
Q 003205 141 WGNGVVCVTEANRYFCMADFATMKVCELARPEVE-ELPHCVAVIEPKYTMTGSVEVLIGT--DAGILMLDEDGVQ----- 212 (839)
Q Consensus 141 ~~~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~-~~~~~w~vi~~~~S~~~~~~v~~s~--d~tv~l~~~~~~~----- 212 (839)
...-++++.... + +|.|+...+ .|-.+... ..|...+.++| ++.+..+++-+. .|.|++||....+
T Consensus 96 Nr~RLvV~Lee~-I-yIydI~~Mk--lLhTI~t~~~n~~gl~AlS~--n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I 169 (391)
T KOG2110|consen 96 NRKRLVVCLEES-I-YIYDIKDMK--LLHTIETTPPNPKGLCALSP--NNANCYLAYPGSTTSGDVVLFDTINLQPVNTI 169 (391)
T ss_pred ccceEEEEEccc-E-EEEecccce--eehhhhccCCCccceEeecc--CCCCceEEecCCCCCceEEEEEcccceeeeEE
Confidence 888888888766 3 355555443 22221110 12333333333 334456666553 7899999998775
Q ss_pred cccCCCceEEEECCCCcEEEEeecCCe-EEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCCce
Q 003205 213 KVDDTLSQKMAVSPNGNFVACFTHDGR-LVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPV 291 (839)
Q Consensus 213 ~~~~~~i~~ia~Spng~~iA~~~~~g~-i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v 291 (839)
..|.+++-.++|||+|..||++++.|| |+|++..-++.+.||.-+. .|-++. ++
T Consensus 170 ~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~--~~~~Iy-----------------------SL 224 (391)
T KOG2110|consen 170 NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT--YPVSIY-----------------------SL 224 (391)
T ss_pred EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc--eeeEEE-----------------------EE
Confidence 578999999999999999999999999 7888876688887875442 122221 57
Q ss_pred EeccCCCeE-EeecCCceEEEccCcce
Q 003205 292 QYFYDEPLV-LIPECDGVRILSNSSME 317 (839)
Q Consensus 292 ~f~~~~~~~-l~~E~DGvRIit~~~~~ 317 (839)
.|..|++.+ .+++-+-|.|+-.+...
T Consensus 225 ~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 225 SFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EECCCCCeEEEecCCCeEEEEEecccc
Confidence 788887766 45555669999887555
No 162
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.40 E-value=6.4e-05 Score=74.57 Aligned_cols=192 Identities=14% Similarity=0.159 Sum_probs=126.9
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC---Cce---eEEEecCCCCCeEEEeecCCC----eEE
Q 003205 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG---VLI---SETVWKNPGGRLIGMSWSEDQ----TLI 102 (839)
Q Consensus 33 l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G---~ll---~ti~~~~~~~~I~~~~fs~de----~Lv 102 (839)
-+.|.++.||+|++||+.++ |.+|++.-.+. +.. -.+.-|. |.|.+|+|-++- .++
T Consensus 90 gsiyc~~ws~~geliatgsn------------dk~ik~l~fn~dt~~~~g~dle~nmhd--gtirdl~fld~~~s~~~il 155 (350)
T KOG0641|consen 90 GSIYCTAWSPCGELIATGSN------------DKTIKVLPFNADTCNATGHDLEFNMHD--GTIRDLAFLDDPESGGAIL 155 (350)
T ss_pred ccEEEEEecCccCeEEecCC------------CceEEEEecccccccccCcceeeeecC--CceeeeEEecCCCcCceEE
Confidence 35689999999999999874 66777643221 222 2366677 999999998753 344
Q ss_pred EEEeCCeEEEE--e-CCCCccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCc-eEEEcCCCCCCCCC
Q 003205 103 CVVQDGTVYRY--N-IHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATM-KVCELARPEVEELP 177 (839)
Q Consensus 103 ~v~~dGtv~l~--~-~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~-~~~~l~~~~~~~~~ 177 (839)
.-..-|-.++| + -.|+-.+-..|| ..-|...--| +|-.+++++++ .+..|++.-+ -+..+.+..-+..-
T Consensus 156 ~s~gagdc~iy~tdc~~g~~~~a~sgh-----tghilalysw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gl 229 (350)
T KOG0641|consen 156 ASAGAGDCKIYITDCGRGQGFHALSGH-----TGHILALYSW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGL 229 (350)
T ss_pred EecCCCcceEEEeecCCCCcceeecCC-----cccEEEEEEe-cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCc
Confidence 44455667777 3 356666667778 6678876667 77788887764 3445554322 23333221111111
Q ss_pred ceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEe
Q 003205 178 HCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (839)
Q Consensus 178 ~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~s 244 (839)
.+-+|-.....|+|..++..-.|..-.++|..|.. -.|...|..+.|||..-++.+.+.|..|++-+
T Consensus 230 essavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltd 301 (350)
T KOG0641|consen 230 ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTD 301 (350)
T ss_pred ccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEee
Confidence 11112111223489999988889988999999875 35677899999999999999999998888754
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.39 E-value=7.5e-06 Score=89.29 Aligned_cols=197 Identities=13% Similarity=0.131 Sum_probs=128.5
Q ss_pred CCceEEEEcCCCCceeE-EEecCCCCCeEEEeecC-CCeEEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEE
Q 003205 64 ALRKLRIFNSAGVLISE-TVWKNPGGRLIGMSWSE-DQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFW 141 (839)
Q Consensus 64 ~~~~I~iy~~~G~ll~t-i~~~~~~~~I~~~~fs~-de~Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~ 141 (839)
..++|+||+..-+++.. ++.|+ +.|.+|.++- ||.+++|+..|-+.+.+..-+...+.+++.. ..-|.-.+++
T Consensus 99 ~~~~Vkiwdl~~kl~hr~lkdh~--stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s---gqsvRll~ys 173 (673)
T KOG4378|consen 99 QSGCVKIWDLRAKLIHRFLKDHQ--STVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS---GQSVRLLRYS 173 (673)
T ss_pred cCceeeehhhHHHHHhhhccCCc--ceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC---CCeEEEeecc
Confidence 57899999999887665 67777 9999999987 5668999999999988876666555555521 2234456777
Q ss_pred CCeEE-EEe-cCCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCC-cEEEEEEeCCeEEEEecCCcc----cc
Q 003205 142 GNGVV-CVT-EANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTG-SVEVLIGTDAGILMLDEDGVQ----KV 214 (839)
Q Consensus 142 ~~G~v-~~t-~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~-~~~v~~s~d~tv~l~~~~~~~----~~ 214 (839)
+.--. +.+ ++.-.+.+|+..+..+.--.. ..+...|-.| -|||.. ..+|.++.|..|+++|..... ..
T Consensus 174 ~skr~lL~~asd~G~VtlwDv~g~sp~~~~~--~~HsAP~~gi---cfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~ 248 (673)
T KOG4378|consen 174 PSKRFLLSIASDKGAVTLWDVQGMSPIFHAS--EAHSAPCRGI---CFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT 248 (673)
T ss_pred cccceeeEeeccCCeEEEEeccCCCcccchh--hhccCCcCcc---eecCCccceEEEecccceEEEeecccccccceee
Confidence 63333 333 233356677776543322111 0011111111 244444 577889999999999988654 34
Q ss_pred cCCCceEEEECCCCcEEEEeecCCeEEEEecC-CCCccccccCCCCCCCCceeeecCc
Q 003205 215 DDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN-FSSPVIDESCESALPPEQIAWCGMD 271 (839)
Q Consensus 215 ~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd-~~~~l~e~~~~~~~~p~~~~WcG~d 271 (839)
-..|+..++|+|+|-++|.++..|.|..++-- ....+.....+ +..+..++|--.-
T Consensus 249 y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah-~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 249 YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH-DASVTRVAFQPSP 305 (673)
T ss_pred ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec-ccceeEEEeeecc
Confidence 56899999999999999999999999888633 22333222233 2235666776554
No 164
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.39 E-value=2.7e-06 Score=94.31 Aligned_cols=207 Identities=14% Similarity=0.129 Sum_probs=128.9
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc------C-C----CCceeEEEecCCCCCeEEEeecCCC-
Q 003205 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN------S-A----GVLISETVWKNPGGRLIGMSWSEDQ- 99 (839)
Q Consensus 32 ~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~------~-~----G~ll~ti~~~~~~~~I~~~~fs~de- 99 (839)
......|+++++|.-+=..+ .|++|+.|| + + -.+..++.+|. +.++.+.+|+.-
T Consensus 344 ~gPVl~v~v~~n~~~~ysgg------------~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ght--davw~l~~s~~~~ 409 (577)
T KOG0642|consen 344 EGPVLCVVVPSNGEHCYSGG------------IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHT--DAVWLLALSSTKD 409 (577)
T ss_pred cCceEEEEecCCceEEEeec------------cCceeeeeccCCCCCcccccCcchhccceeccc--cceeeeeeccccc
Confidence 45566777888777766654 799999993 1 1 14566788898 999999999864
Q ss_pred eEEEEEeCCeEEEEeCCCCcc-ccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCC-CceEEEcCCCCCCCC-
Q 003205 100 TLICVVQDGTVYRYNIHAELI-EPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFA-TMKVCELARPEVEEL- 176 (839)
Q Consensus 100 ~Lv~v~~dGtv~l~~~~G~~~-~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~-~~~~~~l~~~~~~~~- 176 (839)
+|++.+.|||||+|...++.. +|..+.+-. .....+..-|.--..+......++.+.+++ ..+...+.+......
T Consensus 410 ~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g--~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~ 487 (577)
T KOG0642|consen 410 RLLSCSSDGTVRLWEPTEESPCTFGEPKEHG--YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPR 487 (577)
T ss_pred ceeeecCCceEEeeccCCcCccccCCccccC--CcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCccc
Confidence 589999999999998765543 222221100 111122221222222333333344445444 233334433222111
Q ss_pred --CceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCC
Q 003205 177 --PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSS 249 (839)
Q Consensus 177 --~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~ 249 (839)
+..--|++ .|.+...+.+-.|.+|..++..... ..+...++++++-|||-++++++.||.+.+|+.|-..
T Consensus 488 ~~~~in~vVs---~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 488 RYPQINKVVS---HPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred ccCccceEEe---cCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 22112222 2256666666678888888766433 4567789999999999999999999999999987666
Q ss_pred ccccccCC
Q 003205 250 PVIDESCE 257 (839)
Q Consensus 250 ~l~e~~~~ 257 (839)
+..|...+
T Consensus 565 ~~~es~~~ 572 (577)
T KOG0642|consen 565 CVLESTAH 572 (577)
T ss_pred eeeccccc
Confidence 66665444
No 165
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.38 E-value=9.3e-06 Score=84.53 Aligned_cols=264 Identities=16% Similarity=0.214 Sum_probs=155.8
Q ss_pred eEEEeecCCCe-EEEEEeCCeEEEEeCCCCccc--------cCCCCCcccc-ccCeEEEEEE-------C-CeEEEEecC
Q 003205 90 LIGMSWSEDQT-LICVVQDGTVYRYNIHAELIE--------PNASMGKECF-EENVVECVFW-------G-NGVVCVTEA 151 (839)
Q Consensus 90 I~~~~fs~de~-Lv~v~~dGtv~l~~~~G~~~~--------~~~g~~~~~~-~~~V~~~~~~-------~-~G~v~~t~~ 151 (839)
..+..|||||. +++.+.|.+.++|++.-.... +++-.+.... ...|.+...+ | +-.+++++.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 56677999997 789999999999987533311 1110000000 2334444433 2 333333333
Q ss_pred CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecC--Ccc-----------cccCCC
Q 003205 152 NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED--GVQ-----------KVDDTL 218 (839)
Q Consensus 152 ~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~--~~~-----------~~~~~~ 218 (839)
.+=+.+|+.-....+-=. ...+......+.++-.|||||..+ +++...+|.++|.. |+. .+..+-
T Consensus 132 ~~PIh~wdaftG~lraSy-~~ydh~de~taAhsL~Fs~DGeql-faGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASY-RAYDHQDEYTAAHSLQFSPDGEQL-FAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred cCceeeeeccccccccch-hhhhhHHhhhhheeEEecCCCCeE-eecccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 222333333222211100 011122222334555799999865 57888999999874 432 123556
Q ss_pred ceEEEECCCCc-EEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeee--cC--------ceEEEEecC-----E-E
Q 003205 219 SQKMAVSPNGN-FVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC--GM--------DSVLLYWND-----M-L 281 (839)
Q Consensus 219 i~~ia~Spng~-~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~Wc--G~--------d~vv~~~~~-----~-l 281 (839)
+..++|||-.- .+|.++...++=|+..+-.+.+.-.-.+ ...+..+.|| || |.-++.|+- . .
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh-~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH-GGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeeccc-CCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence 88999999764 8999888778888887766655433344 5678899999 32 455667752 1 2
Q ss_pred EEEcC---CCCceEeccC--CCeEEeecCCc-eEEEccCc-ceeeeccchhhHhhhccCCCChhhhHHHHHHHHhccChh
Q 003205 282 VMVAP---QAEPVQYFYD--EPLVLIPECDG-VRILSNSS-MEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAK 354 (839)
Q Consensus 282 ~lig~---~~~~v~f~~~--~~~~l~~E~DG-vRIit~~~-~~~l~~Vp~~~~~vf~igS~~pga~L~~A~~~~~~~~~~ 354 (839)
.|.++ .++.|-|..+ +.......-|| ||+|..+. ++-.+..|.+..-+-.+...+-=-||..++-.+--..|+
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~f~~~~ 368 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIFKYPK 368 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCceeecCCC
Confidence 34444 4457778665 55667777999 99999987 665555555554444444333345677777666555565
Q ss_pred hH
Q 003205 355 AD 356 (839)
Q Consensus 355 a~ 356 (839)
+|
T Consensus 369 dD 370 (406)
T KOG2919|consen 369 DD 370 (406)
T ss_pred cc
Confidence 53
No 166
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.38 E-value=1.2e-05 Score=85.62 Aligned_cols=188 Identities=13% Similarity=0.200 Sum_probs=116.3
Q ss_pred eEEEecCCCCCeEEEeecC--CCeEEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEecCC-eEE
Q 003205 79 SETVWKNPGGRLIGMSWSE--DQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYF 155 (839)
Q Consensus 79 ~ti~~~~~~~~I~~~~fs~--de~Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~ 155 (839)
..+.+|. +++.++.|.| |..++++++|.||.+|.+.-..+...+.+ .|.+ +++-. ++-
T Consensus 75 P~v~GHt--~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte-------pvv~----------L~gH~rrVg 135 (472)
T KOG0303|consen 75 PLVCGHT--APVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE-------PVVE----------LYGHQRRVG 135 (472)
T ss_pred CCccCcc--ccccccccCccCCceeecCCCCceEEEEECCCcccccCccc-------ceEE----------EeecceeEE
Confidence 3456788 9999999999 34478999999999998654443323222 2222 11111 110
Q ss_pred EEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----cccCCCceEEEECCCCcEE
Q 003205 156 CMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFV 231 (839)
Q Consensus 156 ~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----~~~~~~i~~ia~Spng~~i 231 (839)
.| .|.-. -.++++.++.|++|.+|+..... ..|..-|.+|+|+.||..+
T Consensus 136 ~V---------------------~wHPt------A~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l 188 (472)
T KOG0303|consen 136 LV---------------------QWHPT------APNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLL 188 (472)
T ss_pred EE---------------------eeccc------chhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCcee
Confidence 00 12111 12445666778888888866433 3367778899999999999
Q ss_pred EEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceE------------EEEecC-----EEEEEcCCCC-ceEe
Q 003205 232 ACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSV------------LLYWND-----MLVMVAPQAE-PVQY 293 (839)
Q Consensus 232 A~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~v------------v~~~~~-----~l~lig~~~~-~v~f 293 (839)
|+.+.|..|.||+.--+..+.|-..+.-..|....|.|+--+ +..|+- .+.+..-++. -|-|
T Consensus 189 ~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~ 268 (472)
T KOG0303|consen 189 CTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLL 268 (472)
T ss_pred eeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEE
Confidence 999889889999887777777766666667778888865432 223421 2333333322 2333
Q ss_pred c-cC---CCeEEeecCCc-eEEEc
Q 003205 294 F-YD---EPLVLIPECDG-VRILS 312 (839)
Q Consensus 294 ~-~~---~~~~l~~E~DG-vRIit 312 (839)
+ || +.++|+.--|| ||-+-
T Consensus 269 PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 269 PFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred eeecCCCCEEEEEecCCcceEEEE
Confidence 2 33 33568888887 87753
No 167
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=98.35 E-value=7.4e-06 Score=88.84 Aligned_cols=169 Identities=12% Similarity=0.144 Sum_probs=117.7
Q ss_pred cCCceEEEEcCCCCc--------eeEEEecCCCCCeEEEeecC-CCe-EEEEEeCCeEEEEeCCC---CccccCCCCCcc
Q 003205 63 SALRKLRIFNSAGVL--------ISETVWKNPGGRLIGMSWSE-DQT-LICVVQDGTVYRYNIHA---ELIEPNASMGKE 129 (839)
Q Consensus 63 ~~~~~I~iy~~~G~l--------l~ti~~~~~~~~I~~~~fs~-de~-Lv~v~~dGtv~l~~~~G---~~~~~~~g~~~~ 129 (839)
+.+.+|++|+-++.. ...+..|. +.|-++.|.+ ++. +.+|.+||.+.|||..- +....--+|
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~--~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah--- 271 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKTIFSGHE--DVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH--- 271 (422)
T ss_pred cCCCcEEEEeccccccCCccccceEEeecCC--cceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccccc---
Confidence 468889999866543 34467777 8899999998 344 47999999999998652 223333445
Q ss_pred ccccCeEEEEEEC-CeEEEEecCCe-EEEEecCCCc--eEEEcCCCCCCCCCceEEEeCCCCCCCCcEE-EEEEeCCeEE
Q 003205 130 CFEENVVECVFWG-NGVVCVTEANR-YFCMADFATM--KVCELARPEVEELPHCVAVIEPKYTMTGSVE-VLIGTDAGIL 204 (839)
Q Consensus 130 ~~~~~V~~~~~~~-~G~v~~t~~~~-~~~v~~~~~~--~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~-v~~s~d~tv~ 204 (839)
...|..++|.+ ++.+++|++-+ -..+++.... .+..+.. .... |....+||...++ ++.+.|+.+.
T Consensus 272 --~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~----H~de---v~~V~WSPh~etvLASSg~D~rl~ 342 (422)
T KOG0264|consen 272 --SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG----HEDE---VFQVEWSPHNETVLASSGTDRRLN 342 (422)
T ss_pred --CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC----CCcc---eEEEEeCCCCCceeEecccCCcEE
Confidence 66799999988 99999998642 2344443221 1222221 2333 4444778887655 5555699999
Q ss_pred EEecCCc---c----------------cccCCCceEEEECCCCc-EEEEeecCCeEEEEec
Q 003205 205 MLDEDGV---Q----------------KVDDTLSQKMAVSPNGN-FVACFTHDGRLVVNNT 245 (839)
Q Consensus 205 l~~~~~~---~----------------~~~~~~i~~ia~Spng~-~iA~~~~~g~i~i~ss 245 (839)
+||.... + .+|...|..++..|+-. .||++++|+.++||.-
T Consensus 343 vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 343 VWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred EEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 9998722 1 36777799999999985 6999999999999974
No 168
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.35 E-value=0.00024 Score=78.56 Aligned_cols=187 Identities=8% Similarity=0.056 Sum_probs=110.0
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC--CCc--eeEEEecCCCCCeEEEeecCCCeEE-EEE-eCCe
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA--GVL--ISETVWKNPGGRLIGMSWSEDQTLI-CVV-QDGT 109 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~--G~l--l~ti~~~~~~~~I~~~~fs~de~Lv-~v~-~dGt 109 (839)
..++++|+|..+++... .++.|.+|+.+ |++ +.++. .. +....+.|+|+++.+ ++. .+|.
T Consensus 38 ~~l~~spd~~~lyv~~~-----------~~~~i~~~~~~~~g~l~~~~~~~-~~--~~p~~i~~~~~g~~l~v~~~~~~~ 103 (330)
T PRK11028 38 QPMVISPDKRHLYVGVR-----------PEFRVLSYRIADDGALTFAAESP-LP--GSPTHISTDHQGRFLFSASYNANC 103 (330)
T ss_pred ccEEECCCCCEEEEEEC-----------CCCcEEEEEECCCCceEEeeeec-CC--CCceEEEECCCCCEEEEEEcCCCe
Confidence 36789999998877642 35778888754 443 33343 22 567899999999854 333 4899
Q ss_pred EEEEeCC--CCcccc--CCCCCccccccCeEEEEEECCeEEEEecC-C-eEEEEecCCC-ceEEEc----CCCCCCCCCc
Q 003205 110 VYRYNIH--AELIEP--NASMGKECFEENVVECVFWGNGVVCVTEA-N-RYFCMADFAT-MKVCEL----ARPEVEELPH 178 (839)
Q Consensus 110 v~l~~~~--G~~~~~--~~g~~~~~~~~~V~~~~~~~~G~v~~t~~-~-~~~~v~~~~~-~~~~~l----~~~~~~~~~~ 178 (839)
+.+|++. |...+. .... ......+.+.++|..+++.+ + +...+++++. ..+... ...+.+..|+
T Consensus 104 v~v~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~ 178 (330)
T PRK11028 104 VSVSPLDKDGIPVAPIQIIEG-----LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPR 178 (330)
T ss_pred EEEEEECCCCCCCCceeeccC-----CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCc
Confidence 9999764 433211 1111 12356678888886554432 2 3333444432 111100 0111224455
Q ss_pred eEEEeCCCCCCCCcEEEEEEe-CCeEEEEecCC---cc----cc----c----CCCceEEEECCCCcEEEEeec-CCeEE
Q 003205 179 CVAVIEPKYTMTGSVEVLIGT-DAGILMLDEDG---VQ----KV----D----DTLSQKMAVSPNGNFVACFTH-DGRLV 241 (839)
Q Consensus 179 ~w~vi~~~~S~~~~~~v~~s~-d~tv~l~~~~~---~~----~~----~----~~~i~~ia~Spng~~iA~~~~-~g~i~ 241 (839)
+. .|+|+|+....+.. +++|.+|+.+. .. .. . ......|.+||||+++...+. +++|.
T Consensus 179 ~~-----~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~ 253 (330)
T PRK11028 179 HM-----VFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLIS 253 (330)
T ss_pred eE-----EECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEE
Confidence 32 34559998877776 89999998762 11 10 0 111236999999999888765 56788
Q ss_pred EEecC
Q 003205 242 VNNTN 246 (839)
Q Consensus 242 i~ssd 246 (839)
+|+.+
T Consensus 254 v~~i~ 258 (330)
T PRK11028 254 VFSVS 258 (330)
T ss_pred EEEEe
Confidence 88654
No 169
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.35 E-value=4.4e-05 Score=87.42 Aligned_cols=188 Identities=9% Similarity=0.028 Sum_probs=111.4
Q ss_pred CEEEEcCCCCeEEE--EecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEe-CCe--
Q 003205 36 NKVACAPFGGPIAV--IRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQ-DGT-- 109 (839)
Q Consensus 36 ~~va~sp~Gg~IA~--~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~-dGt-- 109 (839)
..=++||+|.-+|+ ++.+ ...+.|.+.+.+|..-..+.-.. +......|||||+ |+.+++ +|.
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~---------~g~~~I~~~~l~~g~~~~lt~~~--g~~~~p~wSPDG~~Laf~s~~~g~~d 256 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYK---------LGVPKIFLGSLENPAGKKILALQ--GNQLMPTFSPRKKLLAFISDRYGNPD 256 (428)
T ss_pred ccceEccCCCceEEEEEEcc---------CCCceEEEEECCCCCceEeecCC--CCccceEECCCCCEEEEEECCCCCcc
Confidence 34589999987554 5532 24688999998877666665444 6667789999996 554442 332
Q ss_pred --EEEEeCC----CCccccCCCCCccccccCeEEEEEECCeEEEE-ec--CC--eEEEEec-CCCceEEEcCCCCCCCCC
Q 003205 110 --VYRYNIH----AELIEPNASMGKECFEENVVECVFWGNGVVCV-TE--AN--RYFCMAD-FATMKVCELARPEVEELP 177 (839)
Q Consensus 110 --v~l~~~~----G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~-t~--~~--~~~~v~~-~~~~~~~~l~~~~~~~~~ 177 (839)
+..|++. |+..+..-+. ...+....+++||..++ ++ ++ ++|.++- -.+...+.+.. ...
T Consensus 257 i~~~~~~~~~g~~g~~~~lt~~~-----~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~----~~~ 327 (428)
T PRK01029 257 LFIQSFSLETGAIGKPRRLLNEA-----FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK----KYR 327 (428)
T ss_pred eeEEEeecccCCCCcceEeecCC-----CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc----CCC
Confidence 3335543 2322222111 11224567888886433 33 22 4665531 11222334432 111
Q ss_pred ceEEEeCCCCCCCCcEEEEEEeC---CeEEEEecCCcc--cc--cCCCceEEEECCCCcEEEEeecC---CeEEEEecC
Q 003205 178 HCVAVIEPKYTMTGSVEVLIGTD---AGILMLDEDGVQ--KV--DDTLSQKMAVSPNGNFVACFTHD---GRLVVNNTN 246 (839)
Q Consensus 178 ~~w~vi~~~~S~~~~~~v~~s~d---~tv~l~~~~~~~--~~--~~~~i~~ia~Spng~~iA~~~~~---g~i~i~ssd 246 (839)
.+..|.+||||+.+++.+.+ ..|++|+..+.. .. ....+...++||||+.|++.+.+ +.|++++.+
T Consensus 328 ---~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 328 ---NSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred ---CccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 12356789999999988763 368999987654 22 23356789999999999876543 347777765
No 170
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.34 E-value=6.2e-05 Score=85.93 Aligned_cols=167 Identities=17% Similarity=0.263 Sum_probs=106.9
Q ss_pred CCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeE-EEEEeC---CeEEEEeCC-CCccccCCCCCccccccCeEEE
Q 003205 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQD---GTVYRYNIH-AELIEPNASMGKECFEENVVEC 138 (839)
Q Consensus 64 ~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~d---Gtv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~ 138 (839)
....|.+++.+|.....+..+. +.+....|||||+. +.+..+ .++++|++. |+..... .+ ...+..+
T Consensus 168 ~~~~l~~~d~~g~~~~~l~~~~--~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~-----~~~~~~~ 239 (417)
T TIGR02800 168 RRYELQVADYDGANPQTITRSR--EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-SF-----PGMNGAP 239 (417)
T ss_pred CcceEEEEcCCCCCCEEeecCC--CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cC-----CCCccce
Confidence 3567889999988877777655 67899999999984 444433 478889875 4332221 11 2234557
Q ss_pred EEECCeEEE-EecC----CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeC---CeEEEEecCC
Q 003205 139 VFWGNGVVC-VTEA----NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTD---AGILMLDEDG 210 (839)
Q Consensus 139 ~~~~~G~v~-~t~~----~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d---~tv~l~~~~~ 210 (839)
.++++|..+ ++.+ .++|.++ ..+.....+... .. ....|.|||||+.+++.+.. ..||+++..+
T Consensus 240 ~~spDg~~l~~~~~~~~~~~i~~~d-~~~~~~~~l~~~-----~~--~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 240 AFSPDGSKLAVSLSKDGNPDIYVMD-LDGKQLTRLTNG-----PG--IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG 311 (417)
T ss_pred EECCCCCEEEEEECCCCCccEEEEE-CCCCCEEECCCC-----CC--CCCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 888888533 3322 2455443 444444444321 11 12345678899999887753 2689998876
Q ss_pred cc----cccCCCceEEEECCCCcEEEEeecCC---eEEEEecC
Q 003205 211 VQ----KVDDTLSQKMAVSPNGNFVACFTHDG---RLVVNNTN 246 (839)
Q Consensus 211 ~~----~~~~~~i~~ia~Spng~~iA~~~~~g---~i~i~ssd 246 (839)
.. ..+.......++||+|++|+..+.++ .|++++.+
T Consensus 312 ~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~ 354 (417)
T TIGR02800 312 GEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD 354 (417)
T ss_pred CCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence 53 22344567889999999999988765 57777644
No 171
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.33 E-value=0.00013 Score=80.48 Aligned_cols=256 Identities=18% Similarity=0.235 Sum_probs=158.0
Q ss_pred cCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC--CceeEEEecCCCCCeEEEeecCCCe-EEEEEe-CCeEEEEeCC
Q 003205 41 APFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG--VLISETVWKNPGGRLIGMSWSEDQT-LICVVQ-DGTVYRYNIH 116 (839)
Q Consensus 41 sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G--~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~-dGtv~l~~~~ 116 (839)
+++|..++... +..++.+++|+..+ ..+..+..|. +.|.++.|+|++. +++... ||++++|+..
T Consensus 119 ~~~~~~~~~~~----------~~~d~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (466)
T COG2319 119 SPDGNSILLAS----------SSLDGTVKLWDLSTPGKLIRTLEGHS--ESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186 (466)
T ss_pred CCCcceEEecc----------CCCCccEEEEEecCCCeEEEEEecCc--ccEEEEEECCCCCEEEecCCCCCceEEEEcC
Confidence 67777444432 12488999999885 8888899998 9999999999997 456654 9999999865
Q ss_pred -CCccccCCCCCccccccCeEEEEEECCeE-EEEe-c-CCeEEEEecCCCce-EE-EcCCCCCCCCCceEEEeCCCCCCC
Q 003205 117 -AELIEPNASMGKECFEENVVECVFWGNGV-VCVT-E-ANRYFCMADFATMK-VC-ELARPEVEELPHCVAVIEPKYTMT 190 (839)
Q Consensus 117 -G~~~~~~~g~~~~~~~~~V~~~~~~~~G~-v~~t-~-~~~~~~v~~~~~~~-~~-~l~~~~~~~~~~~w~vi~~~~S~~ 190 (839)
++......+| ...|..+.+.++|- .+++ . ++.+. +|+..... .. .+. ...... +. .|+++
T Consensus 187 ~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~d~~i~-~wd~~~~~~~~~~~~-----~~~~~~-~~--~~~~~ 252 (466)
T COG2319 187 TGKPLSTLAGH-----TDPVSSLAFSPDGGLLIASGSSDGTIR-LWDLSTGKLLRSTLS-----GHSDSV-VS--SFSPD 252 (466)
T ss_pred CCceEEeeccC-----CCceEEEEEcCCcceEEEEecCCCcEE-EEECCCCcEEeeecC-----CCCcce-eE--eECCC
Confidence 4555556666 56788888888885 5555 2 33444 55443222 21 121 111111 11 67778
Q ss_pred CcEEEEEEeCCeEEEEecCCcc------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcccccc--CCCCCCC
Q 003205 191 GSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDES--CESALPP 262 (839)
Q Consensus 191 ~~~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~--~~~~~~p 262 (839)
+...+..+.++++.+|+..... ..+..++..+.++|++..++..+.++.+.+|+........... .+ ....
T Consensus 253 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~ 331 (466)
T COG2319 253 GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGH-EGPV 331 (466)
T ss_pred CCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeeccc-CCce
Confidence 8777778889999999987543 2557889999999988888888888888899544333333322 22 1123
Q ss_pred Cceee---------e-cCceEEEEecC----EEEEEcCCC--CceEeccCCCeEEe--ecCCc-eEEEccCcceeeeccc
Q 003205 263 EQIAW---------C-GMDSVLLYWND----MLVMVAPQA--EPVQYFYDEPLVLI--PECDG-VRILSNSSMEFLQRVP 323 (839)
Q Consensus 263 ~~~~W---------c-G~d~vv~~~~~----~l~lig~~~--~~v~f~~~~~~~l~--~E~DG-vRIit~~~~~~l~~Vp 323 (839)
..+.| + +.|..+..|+. ......... ..+.+.. . .... .+.|| +++|...........+
T Consensus 332 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (466)
T COG2319 332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLD 409 (466)
T ss_pred EEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeecc
Confidence 44444 2 13333333432 112222221 1344433 3 2222 35555 8888887777666655
Q ss_pred hh
Q 003205 324 AS 325 (839)
Q Consensus 324 ~~ 325 (839)
..
T Consensus 410 ~~ 411 (466)
T COG2319 410 GH 411 (466)
T ss_pred CC
Confidence 44
No 172
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.32 E-value=1.8e-05 Score=89.58 Aligned_cols=187 Identities=15% Similarity=0.175 Sum_probs=134.8
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC-CCceeEEEecCCCCCeEEEeecCCC---e-EEEEEeCCe
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISETVWKNPGGRLIGMSWSEDQ---T-LICVVQDGT 109 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G~ll~ti~~~~~~~~I~~~~fs~de---~-Lv~v~~dGt 109 (839)
...+++||+|+-+|... .-++|+||+.. -..+.++..|. ..|.++.||... + |++++.|.-
T Consensus 462 ~R~~~vSp~gqhLAsGD------------r~GnlrVy~Lq~l~~~~~~eAHe--sEilcLeyS~p~~~~kLLASasrdRl 527 (1080)
T KOG1408|consen 462 FRALAVSPDGQHLASGD------------RGGNLRVYDLQELEYTCFMEAHE--SEILCLEYSFPVLTNKLLASASRDRL 527 (1080)
T ss_pred eEEEEECCCcceecccC------------ccCceEEEEehhhhhhhheeccc--ceeEEEeecCchhhhHhhhhccCCce
Confidence 34899999999999863 47999999964 45677789998 999999999632 3 589999999
Q ss_pred EEEEeCCCCc--cccCCCCCccccccCeEEEEEECCe--EEEEec-C-CeEEEEecCCCceEEEcCCCCCC-CCCceEEE
Q 003205 110 VYRYNIHAEL--IEPNASMGKECFEENVVECVFWGNG--VVCVTE-A-NRYFCMADFATMKVCELARPEVE-ELPHCVAV 182 (839)
Q Consensus 110 v~l~~~~G~~--~~~~~g~~~~~~~~~V~~~~~~~~G--~v~~t~-~-~~~~~v~~~~~~~~~~l~~~~~~-~~~~~w~v 182 (839)
|.+||..-++ .++.-+| ...|..++|-.+| .-+++- . ..++.=.+......+.++..--. ...+.+.+
T Consensus 528 IHV~Dv~rny~l~qtld~H-----SssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm 602 (1080)
T KOG1408|consen 528 IHVYDVKRNYDLVQTLDGH-----SSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDM 602 (1080)
T ss_pred EEEEecccccchhhhhccc-----ccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEe
Confidence 9999987666 6667777 5679999998877 334442 2 22332223223334455432111 22233333
Q ss_pred -eCCCCCCCCcEEEEEEeCCeEEEEecCCc-c-------cccCCCceEEEECCCCcEEEEeecCCeEEEEe
Q 003205 183 -IEPKYTMTGSVEVLIGTDAGILMLDEDGV-Q-------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (839)
Q Consensus 183 -i~~~~S~~~~~~v~~s~d~tv~l~~~~~~-~-------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~s 244 (839)
+.| +-+.++++..|..|.+++.... + ..+.|....+..-|.|-+||+-..|.||-+++
T Consensus 603 ~Vdp----~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~D 669 (1080)
T KOG1408|consen 603 AVDP----TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVD 669 (1080)
T ss_pred eeCC----CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEE
Confidence 344 7788999999999999997743 3 34567788999999999999999999988874
No 173
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.31 E-value=2.3e-05 Score=81.72 Aligned_cols=219 Identities=14% Similarity=0.160 Sum_probs=143.1
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCc----eeEEEecCCCCCeEEEeecCCC-eEEEEEeCCe
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVL----ISETVWKNPGGRLIGMSWSEDQ-TLICVVQDGT 109 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~l----l~ti~~~~~~~~I~~~~fs~de-~Lv~v~~dGt 109 (839)
.+.-|.++++..||+.++ ...|+||...|.- ..+++-|. ..|.+++|+|.. .+++++.|..
T Consensus 13 itchAwn~drt~iAv~~~------------~~evhiy~~~~~~~w~~~htls~Hd--~~vtgvdWap~snrIvtcs~drn 78 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPN------------NHEVHIYSMLGADLWEPAHTLSEHD--KIVTGVDWAPKSNRIVTCSHDRN 78 (361)
T ss_pred eeeeeecCCCceEEeccC------------CceEEEEEecCCCCceeceehhhhC--cceeEEeecCCCCceeEccCCCC
Confidence 456788999999999873 5689999988865 55677676 889999999988 6899999999
Q ss_pred EEEEeC--CCCcccc--CCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCceEEEcCCCCCCCCCceEEEeC
Q 003205 110 VYRYNI--HAELIEP--NASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKVCELARPEVEELPHCVAVIE 184 (839)
Q Consensus 110 v~l~~~--~G~~~~~--~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~ 184 (839)
-++|.. .|+...+ .+.+ +.....++.+|++--++++++ +++.|.-+++.+.+-.... + ..|.-=+|.+
T Consensus 79 ayVw~~~~~~~WkptlvLlRi-----NrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKh-i-kkPirStv~s 151 (361)
T KOG1523|consen 79 AYVWTQPSGGTWKPTLVLLRI-----NRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKH-I-KKPIRSTVTS 151 (361)
T ss_pred ccccccCCCCeeccceeEEEe-----ccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhh-h-CCccccceee
Confidence 999975 4555332 2222 455677787887777777655 6666666654433322110 0 1121112222
Q ss_pred CCCCCCCcEEEEEEeCCeEEEEec-----CCc--------c----------cccCCCceEEEECCCCcEEEEeecCCeEE
Q 003205 185 PKYTMTGSVEVLIGTDAGILMLDE-----DGV--------Q----------KVDDTLSQKMAVSPNGNFVACFTHDGRLV 241 (839)
Q Consensus 185 ~~~S~~~~~~v~~s~d~tv~l~~~-----~~~--------~----------~~~~~~i~~ia~Spng~~iA~~~~~g~i~ 241 (839)
-++.|++-+++..+.|+..++++. +.. . ....+.++++.|||+|..||..+.|.++.
T Consensus 152 ldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~ 231 (361)
T KOG1523|consen 152 LDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVS 231 (361)
T ss_pred eeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceE
Confidence 234446666666666776555542 211 1 14567799999999999999999999999
Q ss_pred EEecCCCC-ccccccCCCCCCCCceeeecCceEEE
Q 003205 242 VNNTNFSS-PVIDESCESALPPEQIAWCGMDSVLL 275 (839)
Q Consensus 242 i~ssd~~~-~l~e~~~~~~~~p~~~~WcG~d~vv~ 275 (839)
+.+..-.. ......+. +.+...+.|..+..+|.
T Consensus 232 ~~da~~p~~~v~~~~~~-~lP~ls~~~ise~~vv~ 265 (361)
T KOG1523|consen 232 FVDAAGPSERVQSVATA-QLPLLSVSWISENSVVA 265 (361)
T ss_pred EeecCCCchhccchhhc-cCCceeeEeecCCceee
Confidence 88755322 22223333 34556888877766654
No 174
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.30 E-value=0.0033 Score=76.24 Aligned_cols=322 Identities=15% Similarity=0.090 Sum_probs=179.3
Q ss_pred HHHHHHHcCChHHHHHHHHHhCCChhhHHHHhHhhhhhh-----------------------------------------
Q 003205 443 LIGRLINANCHLLALRISEYLGMNQEVVIMHWACSKITA----------------------------------------- 481 (839)
Q Consensus 443 li~rL~~r~~~~lA~~I~~~l~~~~~~I~~~WA~~kI~~----------------------------------------- 481 (839)
-+.-++.+.+|.-|+.+|+-.++.-+.|+.|=...-++.
T Consensus 683 ~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s~k~~ 762 (1265)
T KOG1920|consen 683 KVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTSGSGKQV 762 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhcccccccccee
Confidence 356789999999999999988887655554443222210
Q ss_pred --cCCCCh---HHHHHHHHHHhccCCCCCHHHHHHHHHHh-CcHHH--HHHHHhc------CCCCCCchhhhhccCchHH
Q 003205 482 --SLAIPD---VTLLEILLDKLKLCKGISYAAVAAHADKS-GRRKL--AAMLVEH------EPRSSKQVPLLLSIGEEDT 547 (839)
Q Consensus 482 --~~~~~D---~~l~~~I~~kl~~~~~is~~~IA~~A~~~-gR~~L--A~~Ll~~------E~~~~~qV~lLl~~~~~~~ 547 (839)
+.+..| +.++++|.+-|...++=.|-.---.++-+ +=+.+ |...+.. -+.+..-+.-|+.+-+-+.
T Consensus 763 ~~~r~~~d~kv~~vc~~vr~~l~~~~~~~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvdvn~ 842 (1265)
T KOG1920|consen 763 YMSRDPYDNKVNSVCDAVRNALERRAPDKFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFLVDVNE 842 (1265)
T ss_pred EEeccchhhHHHHHHHHHHHHHhhcCcchhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhccHHH
Confidence 001222 23566666665433322333333333322 21122 2111111 2344556778888888888
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhhCChhHHHHHHhcChhHHHHHHHHHHhcCHHHHHHHHHhcCChhHHHHHHHHHHHhc
Q 003205 548 ALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWEL 627 (839)
Q Consensus 548 AL~~Ai~S~D~dLI~~vll~l~~~l~~~~f~~~l~~~p~a~~~~~~y~~~~~~~~L~~~~~~~~~~~e~a~~~l~~~~~~ 627 (839)
..+-|+-..|-+|+..|.. +....+.+|.-.|+.-.....++.+| ..|.|.+ + .+.|.-+|...- .
T Consensus 843 lfn~ALgtYDl~Lal~VAq--~SqkDPkEyLP~L~el~~m~~~~rkF--------~ID~~L~--r-y~~AL~hLs~~~-~ 908 (1265)
T KOG1920|consen 843 LFNSALGTYDLDLALLVAQ--KSQKDPKEYLPFLNELKKMETLLRKF--------KIDDYLK--R-YEDALSHLSECG-E 908 (1265)
T ss_pred HHHhhhcccchHHHHHHHH--HhccChHHHHHHHHHHhhchhhhhhe--------eHHHHHH--H-HHHHHHHHHHcC-c
Confidence 8999999999999988765 34456788887776533222222222 1122221 1 233433333211 0
Q ss_pred CCCCCCCCCCCCcchHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHHHHHHHHcCCc
Q 003205 628 GKNPMASNGSALHGPRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNH 707 (839)
Q Consensus 628 ~~~~~~~~~~~~~~~k~~~L~~a~~~~~~~~~~~f~~~~~~~~~~Ll~~Q~~Le~~~~~~~f~~~Sl~~ti~~l~~~~~~ 707 (839)
+-.+ -......|..+.+.|..+|..+. .++....+-+.+.|..-.. +.+ .-+++. +.|+.
T Consensus 909 ~~~~----e~~n~I~kh~Ly~~aL~ly~~~~--e~~k~i~~~ya~hL~~~~~---------~~~---Aal~Ye--~~Gkl 968 (1265)
T KOG1920|consen 909 TYFP----ECKNYIKKHGLYDEALALYKPDS--EKQKVIYEAYADHLREELM---------SDE---AALMYE--RCGKL 968 (1265)
T ss_pred cccH----HHHHHHHhcccchhhhheeccCH--HHHHHHHHHHHHHHHHhcc---------ccH---HHHHHH--HhccH
Confidence 0000 00000022334555555664322 2344445555444432110 111 111222 22444
Q ss_pred chHHhHHhHcCCChHHHHHHHHHHHHhCCChhHHHHhhccCCCC-----CCchHHHHHHHhcCCHHHH-HHhhccCCCHH
Q 003205 708 RAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPP-----IGYRPFVEACVDADEKGEA-LKYIPKLVDPR 781 (839)
Q Consensus 708 k~a~~l~k~fkvsdkr~~~~kl~ala~~~~w~~L~~f~~~KKsp-----Igyepfv~~~~~~~~~~ea-~~yI~~i~d~~ 781 (839)
+.| ++++-..++|++.-..++..+.+ +--+--+..|.+.+.+.|| .-....++|++
T Consensus 969 ekA------------------l~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~ 1030 (1265)
T KOG1920|consen 969 EKA------------------LKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPE 1030 (1265)
T ss_pred HHH------------------HHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHH
Confidence 433 55788889999988888643322 2223456778889988885 45666899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHHh
Q 003205 782 ERAEAYARIGMAKEAADAASQAKDGELLGRLKLTF 816 (839)
Q Consensus 782 ~r~~~~~~~~~~~~A~~~a~~~kd~~~L~~i~~~~ 816 (839)
+-+.+|++...|.+|+-+|...++-+.++...+..
T Consensus 1031 ~av~ll~ka~~~~eAlrva~~~~~~d~iee~l~~a 1065 (1265)
T KOG1920|consen 1031 EAVALLCKAKEWEEALRVASKAKRDDIIEEVLKPA 1065 (1265)
T ss_pred HHHHHHhhHhHHHHHHHHHHhcccchHHHHHHhHH
Confidence 99999999999999999999999777777666554
No 175
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=4.2e-05 Score=79.41 Aligned_cols=200 Identities=15% Similarity=0.151 Sum_probs=117.9
Q ss_pred CCCCCEEEEcC--CCCeEEEEecCchhhhhhcccCCceEEEEcC-------CC---CceeEEEecCCCCCeEEEeecCCC
Q 003205 32 DLSRNKVACAP--FGGPIAVIRDDSKIVQLYAESALRKLRIFNS-------AG---VLISETVWKNPGGRLIGMSWSEDQ 99 (839)
Q Consensus 32 ~l~~~~va~sp--~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-------~G---~ll~ti~~~~~~~~I~~~~fs~de 99 (839)
+-+.++|+.++ +|+.+|+.+ .|+++.||-- .| ....++.-.. +.|.++.|.|--
T Consensus 59 ~~Si~rV~WAhPEfGqvvA~cS------------~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsr--ssV~DV~FaP~h 124 (361)
T KOG2445|consen 59 DGSIWRVVWAHPEFGQVVATCS------------YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSR--SSVTDVKFAPKH 124 (361)
T ss_pred CCcEEEEEecCccccceEEEEe------------cCCceeeeeecccccccccceeEEEEEeecCC--cceeEEEecchh
Confidence 44555565554 999999997 7999999975 33 1344454444 889999999953
Q ss_pred ---eEEEEEeCCeEEEEeC--CCCccccCCCCCcccc------ccCeEEEEEEC-----CeEEEEecCC------eEEEE
Q 003205 100 ---TLICVVQDGTVYRYNI--HAELIEPNASMGKECF------EENVVECVFWG-----NGVVCVTEAN------RYFCM 157 (839)
Q Consensus 100 ---~Lv~v~~dGtv~l~~~--~G~~~~~~~g~~~~~~------~~~V~~~~~~~-----~G~v~~t~~~------~~~~v 157 (839)
.|++++.||++|||.. .+++.+-.+-|+...+ ...-..|.-|. .-..++..+. +.+..
T Consensus 125 lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iy 204 (361)
T KOG2445|consen 125 LGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIY 204 (361)
T ss_pred cceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEE
Confidence 4799999999999953 2444443333321100 11112233343 2222222222 33333
Q ss_pred ecCCCc-eEEEcCCCC-CCCCCc--eEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc---------------------
Q 003205 158 ADFATM-KVCELARPE-VEELPH--CVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--------------------- 212 (839)
Q Consensus 158 ~~~~~~-~~~~l~~~~-~~~~~~--~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~--------------------- 212 (839)
...+.. +.....+.+ .+.+++ +|+- ..=-+-.+++.+..|| |++|......
T Consensus 205 e~~e~~rKw~kva~L~d~~dpI~di~wAP---n~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~ 280 (361)
T KOG2445|consen 205 EYNENGRKWLKVAELPDHTDPIRDISWAP---NIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEK 280 (361)
T ss_pred EecCCcceeeeehhcCCCCCcceeeeecc---ccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEE
Confidence 333322 333333322 111222 3322 1101123566667787 8888766310
Q ss_pred ----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCC
Q 003205 213 ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSS 249 (839)
Q Consensus 213 ----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~ 249 (839)
..|+++|.++.+.-.|-.|++.+.||.+++|.+.|.+
T Consensus 281 vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 281 VSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred eeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhh
Confidence 2678899999999999999999999999999887554
No 176
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.29 E-value=3.8e-06 Score=87.47 Aligned_cols=211 Identities=15% Similarity=0.227 Sum_probs=127.6
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe--EEEEEeCCeEEEEe
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT--LICVVQDGTVYRYN 114 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~--Lv~v~~dGtv~l~~ 114 (839)
-..+||+|..||+..+. .+-|=|..--.+-.+-.- .++|+.+.|..|.. |.++..||.|.+|+
T Consensus 13 ~c~fSp~g~yiAs~~~y-------------rlviRd~~tlq~~qlf~c--ldki~yieW~ads~~ilC~~yk~~~vqvws 77 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-------------RLVIRDSETLQLHQLFLC--LDKIVYIEWKADSCHILCVAYKDPKVQVWS 77 (447)
T ss_pred ceeECCCCCeeeeeeee-------------EEEEeccchhhHHHHHHH--HHHhhheeeeccceeeeeeeeccceEEEEE
Confidence 56899999999998742 222322221111111000 26889999998875 35778899999998
Q ss_pred CC-CCc-cccCCCCCccccccCeEEEEEECCe-EEEEecCCeE-EEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCC
Q 003205 115 IH-AEL-IEPNASMGKECFEENVVECVFWGNG-VVCVTEANRY-FCMADFATMKVCELARPEVEELPHCVAVIEPKYTMT 190 (839)
Q Consensus 115 ~~-G~~-~~~~~g~~~~~~~~~V~~~~~~~~G-~v~~t~~~~~-~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~ 190 (839)
+. -+. -+..-| +.++..++.+|+| -.+.|+..+. ..||.+.......+
T Consensus 78 l~Qpew~ckIdeg------~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~---------------------- 129 (447)
T KOG4497|consen 78 LVQPEWYCKIDEG------QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL---------------------- 129 (447)
T ss_pred eecceeEEEeccC------CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe----------------------
Confidence 63 233 121111 5667777777777 4444444432 22332211111110
Q ss_pred CcEEEEEEeCCeEEEEecCCcccccCCCceEEEECCCCcEEEEeecCCe---EEEEecCCCCccccccCCCCCCCCceee
Q 003205 191 GSVEVLIGTDAGILMLDEDGVQKVDDTLSQKMAVSPNGNFVACFTHDGR---LVVNNTNFSSPVIDESCESALPPEQIAW 267 (839)
Q Consensus 191 ~~~~v~~s~d~tv~l~~~~~~~~~~~~~i~~ia~Spng~~iA~~~~~g~---i~i~ssd~~~~l~e~~~~~~~~p~~~~W 267 (839)
+-....+..++|.|||++.|+.++-.- +.|.+-.-=..+.+|++++ ..-..+.|
T Consensus 130 ----------------------~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT-~DltgieW 186 (447)
T KOG4497|consen 130 ----------------------PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDT-IDLTGIEW 186 (447)
T ss_pred ----------------------cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCc-ccccCceE
Confidence 111234578999999999999986431 2222111123456777663 24568999
Q ss_pred ecCceEEEEecCE----EEEE--cCCCCceEeccCCCeEEeecCCc-eEEEcc
Q 003205 268 CGMDSVLLYWNDM----LVMV--APQAEPVQYFYDEPLVLIPECDG-VRILSN 313 (839)
Q Consensus 268 cG~d~vv~~~~~~----l~li--g~~~~~v~f~~~~~~~l~~E~DG-vRIit~ 313 (839)
.-|++.+..|++- ++.+ |-+=..+.|++-+..+.++..|| +||+..
T Consensus 187 sPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 187 SPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNH 239 (447)
T ss_pred CCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhce
Confidence 9999999999872 2222 22224788888899999999999 999865
No 177
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.28 E-value=3e-05 Score=78.85 Aligned_cols=151 Identities=14% Similarity=0.167 Sum_probs=91.2
Q ss_pred eEEEeecCCCe-E-EEEEe---------CCeEEEE--eCCCCc-cccCCCCCccccccCeEEEEEECCeEE--EEecCC-
Q 003205 90 LIGMSWSEDQT-L-ICVVQ---------DGTVYRY--NIHAEL-IEPNASMGKECFEENVVECVFWGNGVV--CVTEAN- 152 (839)
Q Consensus 90 I~~~~fs~de~-L-v~v~~---------dGtv~l~--~~~G~~-~~~~~g~~~~~~~~~V~~~~~~~~G~v--~~t~~~- 152 (839)
=+.|.|+++|+ | +.+.. -|...+| +..+.. ....+.. +..|.++..+|+|-- ++++..
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~-----~~~I~~~~WsP~g~~favi~g~~~ 82 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKK-----EGPIHDVAWSPNGNEFAVIYGSMP 82 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccC-----CCceEEEEECcCCCEEEEEEccCC
Confidence 37888999987 3 33331 1223344 222222 2222222 345999999987754 444432
Q ss_pred eEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeC---CeEEEEecCCcc---cccCCCceEEEECC
Q 003205 153 RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTD---AGILMLDEDGVQ---KVDDTLSQKMAVSP 226 (839)
Q Consensus 153 ~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d---~tv~l~~~~~~~---~~~~~~i~~ia~Sp 226 (839)
....+.+.+......+.. ... ....|||+|+.+++++.+ |.+.+||..... ..+......+++||
T Consensus 83 ~~v~lyd~~~~~i~~~~~----~~~-----n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsP 153 (194)
T PF08662_consen 83 AKVTLYDVKGKKIFSFGT----QPR-----NTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSP 153 (194)
T ss_pred cccEEEcCcccEeEeecC----CCc-----eEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcC
Confidence 244555554333333322 111 122588899999999864 579999998654 33344578999999
Q ss_pred CCcEEEEeec------CCeEEEEecCCCCcccccc
Q 003205 227 NGNFVACFTH------DGRLVVNNTNFSSPVIDES 255 (839)
Q Consensus 227 ng~~iA~~~~------~g~i~i~ssd~~~~l~e~~ 255 (839)
||+++|+.+. |..++||+-. ++.+.+.+
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 9999999885 4558888765 55655543
No 178
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.25 E-value=6.3e-06 Score=91.96 Aligned_cols=181 Identities=22% Similarity=0.324 Sum_probs=110.1
Q ss_pred eeccccccccCCCCCCCCCEEEEcCCCCeEEEEecCch-----------hhh------------------hhcccCCceE
Q 003205 18 YRKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSK-----------IVQ------------------LYAESALRKL 68 (839)
Q Consensus 18 yr~~e~y~m~w~~~~l~~~~va~sp~Gg~IA~~~d~~k-----------~~~------------------~~~~~~~~~I 68 (839)
++..-+-++.|+. ++....|++.+.|.|-+.|-+.. +.. +...+++-+|
T Consensus 625 ~Ngt~vtDl~WdP--FD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti 702 (1012)
T KOG1445|consen 625 FNGTLVTDLHWDP--FDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTI 702 (1012)
T ss_pred ccCceeeecccCC--CChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhcccee
Confidence 3444455677874 44567888888888887643221 111 1124579999
Q ss_pred EEEc-CCCCceeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEE-E--C
Q 003205 69 RIFN-SAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVF-W--G 142 (839)
Q Consensus 69 ~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~-~--~ 142 (839)
++|+ .+|++-.++.+|+ +.|.+++|||||++ ++|..||++|+|+. .++..- .-|... -+-..+++ | +
T Consensus 703 ~lWDl~~~~~~~~l~gHt--dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv-~Eg~gp----vgtRgARi~wacd 775 (1012)
T KOG1445|consen 703 ELWDLANAKLYSRLVGHT--DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV-YEGKGP----VGTRGARILWACD 775 (1012)
T ss_pred eeeehhhhhhhheeccCc--CceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc-ccCCCC----ccCcceeEEEEec
Confidence 9999 5889999999999 99999999999985 79999999999975 344321 111111 11123333 3 3
Q ss_pred CeEEEEec----CCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe-CCeEEEEecCC
Q 003205 143 NGVVCVTE----ANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDEDG 210 (839)
Q Consensus 143 ~G~v~~t~----~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~-d~tv~l~~~~~ 210 (839)
+-++++++ +.+...+.+.+.-....|....++..|+ .+-|.|.+|.+++++.+. |.+|+++....
T Consensus 776 gr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps---~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 776 GRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPS---PLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred CcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCc---cccccccCCCceEEEecCCCceEEEEEecC
Confidence 44444443 2233333332221222232222333343 345678889998888887 77888876553
No 179
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.24 E-value=7.1e-05 Score=77.55 Aligned_cols=182 Identities=15% Similarity=0.158 Sum_probs=103.1
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCC-----CCCeEEEeecCC-------CeEEE
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNP-----GGRLIGMSWSED-------QTLIC 103 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~-----~~~I~~~~fs~d-------e~Lv~ 103 (839)
.+++.||+|..+|.++ ..|+|++|+.-|..+-.|+-... ...|.+|.|.+- .+|++
T Consensus 47 Rkl~WSpD~tlLa~a~------------S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlv 114 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAE------------STGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLV 114 (282)
T ss_pred eEEEECCCCcEEEEEc------------CCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEE
Confidence 3899999999999997 57999999999999888765331 135888888863 26888
Q ss_pred EEeCCeEEEEeC-CC---Cc---cccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCceEEEcCCCCCCCC
Q 003205 104 VVQDGTVYRYNI-HA---EL---IEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVEEL 176 (839)
Q Consensus 104 v~~dGtv~l~~~-~G---~~---~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~ 176 (839)
+.-+|.++-|-+ .| ++ ..|+++.- ...+|..+...+ ..++..|-+-+... .-.+......
T Consensus 115 i~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~---yp~Gi~~~vy~p--------~h~LLlVgG~~~~~--~~~s~a~~~G 181 (282)
T PF15492_consen 115 INYRGQLRSYLVSVGTNQGYQENHSFSFSSH---YPHGINSAVYHP--------KHRLLLVGGCEQNQ--DGMSKASSCG 181 (282)
T ss_pred EeccceeeeEEEEcccCCcceeeEEEEeccc---CCCceeEEEEcC--------CCCEEEEeccCCCC--CccccccccC
Confidence 989988887743 22 12 12222110 023444433333 22333333221111 0000001134
Q ss_pred CceEEEeCCCCCCCCcEEEEEEeCCe------EEEEecCCc-----ccccCCCceEEEECCCCcEEEEeecCCeEEEEec
Q 003205 177 PHCVAVIEPKYTMTGSVEVLIGTDAG------ILMLDEDGV-----QKVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNT 245 (839)
Q Consensus 177 ~~~w~vi~~~~S~~~~~~v~~s~d~t------v~l~~~~~~-----~~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ss 245 (839)
..+|-+++- +|.-.. |....|+. --++..-.. +......|..|++||||+++|+..-+|.|.+|.-
T Consensus 182 LtaWRiL~~--~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 182 LTAWRILSD--SPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI 258 (282)
T ss_pred ceEEEEcCC--CCcEEE-ccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence 567777542 111111 11111110 011111110 0223556899999999999999999999999974
No 180
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=98.24 E-value=3.4e-05 Score=81.94 Aligned_cols=160 Identities=13% Similarity=0.145 Sum_probs=104.3
Q ss_pred CceeEEEecCCCCCeEEEeecC--CCeEEEEEeCCeEEEEe-CCCCc---cccCCCCCccccccCeEEEEEEC--CeEEE
Q 003205 76 VLISETVWKNPGGRLIGMSWSE--DQTLICVVQDGTVYRYN-IHAEL---IEPNASMGKECFEENVVECVFWG--NGVVC 147 (839)
Q Consensus 76 ~ll~ti~~~~~~~~I~~~~fs~--de~Lv~v~~dGtv~l~~-~~G~~---~~~~~g~~~~~~~~~V~~~~~~~--~G~v~ 147 (839)
.+|-++..|. +.=.+++||| .|.|+++.--+.|++|. -.|.. ...+.|| ...|-+.+.+| +|+..
T Consensus 202 ~Pl~t~~ghk--~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH-----~~SVEDLqWSptE~~vfa 274 (440)
T KOG0302|consen 202 RPLFTFNGHK--GEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGH-----TKSVEDLQWSPTEDGVFA 274 (440)
T ss_pred CceEEecccC--ccceeeecccccccccccCccccceEeeeeccCceeecCcccccc-----ccchhhhccCCccCceEE
Confidence 4677888888 8889999999 67788777777799995 35665 3446678 55677777666 56443
Q ss_pred EecCCeEEEEecCC-CceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc--------cccCCC
Q 003205 148 VTEANRYFCMADFA-TMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--------KVDDTL 218 (839)
Q Consensus 148 ~t~~~~~~~v~~~~-~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~--------~~~~~~ 218 (839)
-.+--.-+.+|++. +|+.-.+.. +...+.-+|| .++-.-.+++..+.||++.+||+...+ +-|..|
T Consensus 275 ScS~DgsIrIWDiRs~~~~~~~~~---kAh~sDVNVI--SWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p 349 (440)
T KOG0302|consen 275 SCSCDGSIRIWDIRSGPKKAAVST---KAHNSDVNVI--SWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAP 349 (440)
T ss_pred eeecCceEEEEEecCCCccceeEe---eccCCceeeE--EccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCC
Confidence 33322233455544 222111211 0112222233 343344567888889999999988543 468999
Q ss_pred ceEEEECCCCc-EEEEeecCCeEEEEecCC
Q 003205 219 SQKMAVSPNGN-FVACFTHDGRLVVNNTNF 247 (839)
Q Consensus 219 i~~ia~Spng~-~iA~~~~~g~i~i~ssd~ 247 (839)
|+.|.++|.-. .||..+.|.+|.||+-..
T Consensus 350 ItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 350 ITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 99999999753 677778889999997553
No 181
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.24 E-value=0.00013 Score=81.25 Aligned_cols=211 Identities=10% Similarity=0.093 Sum_probs=135.0
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCC--eEEEEEeCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQ--TLICVVQDGTVY 111 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de--~Lv~v~~dGtv~ 111 (839)
.-..+.+||+|..+-..+ .++|.|++|+.+---| .+.=|- ...++.|.--.|+ +.|.+..|.+|-
T Consensus 53 ast~ik~s~DGqY~lAtG-----------~YKP~ikvydlanLSL-KFERhl-Dae~V~feiLsDD~SK~v~L~~DR~Ie 119 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLATG-----------TYKPQIKVYDLANLSL-KFERHL-DAEVVDFEILSDDYSKSVFLQNDRTIE 119 (703)
T ss_pred ccceeEecCCCcEEEEec-----------ccCCceEEEEccccee-eeeecc-cccceeEEEeccchhhheEeecCceee
Confidence 345889999999987765 4899999999764333 333333 1466666555454 478999999998
Q ss_pred EEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCceEEEcCCCCCCCCCceEEE-eCCCCCCC
Q 003205 112 RYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAV-IEPKYTMT 190 (839)
Q Consensus 112 l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~v-i~~~~S~~ 190 (839)
+-...|....+-++. ...-....-|.--+.++-++..+|.++--.+..+.+|.. ..+..|+| +++ -
T Consensus 120 fHak~G~hy~~RIP~-----~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~----~~~~lN~v~in~----~ 186 (703)
T KOG2321|consen 120 FHAKYGRHYRTRIPK-----FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET----DSGELNVVSINE----E 186 (703)
T ss_pred ehhhcCeeeeeecCc-----CCccccccCCCccEEEeecCcceEEEEcccccccccccc----ccccceeeeecC----c
Confidence 777777654333322 111111111234444445556788777422333333321 23455766 554 5
Q ss_pred CcEEEEEEeCCeEEEEecCCcc-----------cccCC-----CceEEEECCCCcEEEEeecCCeEEEEecCCCCccccc
Q 003205 191 GSVEVLIGTDAGILMLDEDGVQ-----------KVDDT-----LSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDE 254 (839)
Q Consensus 191 ~~~~v~~s~d~tv~l~~~~~~~-----------~~~~~-----~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~ 254 (839)
.++++..+.+|.|-.||..... ..+.+ .|++++|+-||-.+|.++.+|.+.|++.--++.+..-
T Consensus 187 hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k 266 (703)
T KOG2321|consen 187 HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK 266 (703)
T ss_pred cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec
Confidence 6777777779999999988543 11222 2899999999999999999999999986656666443
Q ss_pred cCCCCCCCCceeeecC
Q 003205 255 SCESALPPEQIAWCGM 270 (839)
Q Consensus 255 ~~~~~~~p~~~~WcG~ 270 (839)
+-.-..+...+.|-..
T Consensus 267 dh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 267 DHGYELPIKKLDWQDT 282 (703)
T ss_pred ccCCccceeeeccccc
Confidence 3333556778999643
No 182
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=7.4e-06 Score=97.71 Aligned_cols=261 Identities=15% Similarity=0.167 Sum_probs=163.3
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhc-ccCCceEEEEcC---CC----CceeEEEecCCCCCeEEEeecCCC-----eEE
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYA-ESALRKLRIFNS---AG----VLISETVWKNPGGRLIGMSWSEDQ-----TLI 102 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~-~~~~~~I~iy~~---~G----~ll~ti~~~~~~~~I~~~~fs~de-----~Lv 102 (839)
-.+|.||.|-+.-.+..-.+. ++. -+.+.++.||.. ++ +++.++.-. .+-..+.|++.+ -++
T Consensus 10 a~~awSp~~~~~laagt~aq~--~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~---~rF~kL~W~~~g~~~~GlIa 84 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQ--FDASFSTSASLEIFELDFSDESSDLKPVGSLQSS---NRFNKLAWGSYGSHSHGLIA 84 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhc--cccccccccccceeeecccCcccccccccccccc---ccceeeeecccCCCccceee
Confidence 367889988422222211111 111 134667777753 33 366666643 577888999854 257
Q ss_pred EEEeCCeEEEEeCC-----CCc--cccCCCCCccccccCeEEEEEEC-CeEEEEecCC--eEEEEecCCCce-EEEcCCC
Q 003205 103 CVVQDGTVYRYNIH-----AEL--IEPNASMGKECFEENVVECVFWG-NGVVCVTEAN--RYFCMADFATMK-VCELARP 171 (839)
Q Consensus 103 ~v~~dGtv~l~~~~-----G~~--~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~~--~~~~v~~~~~~~-~~~l~~~ 171 (839)
-+.+||+|-+||.. +++ +...-.| ...|....|.+ .|.+++++++ +| .+||++.+. +......
T Consensus 85 GG~edG~I~ly~p~~~~~~~~~~~la~~~~h-----~G~V~gLDfN~~q~nlLASGa~~geI-~iWDlnn~~tP~~~~~~ 158 (1049)
T KOG0307|consen 85 GGLEDGNIVLYDPASIIANASEEVLATKSKH-----TGPVLGLDFNPFQGNLLASGADDGEI-LIWDLNKPETPFTPGSQ 158 (1049)
T ss_pred ccccCCceEEecchhhccCcchHHHhhhccc-----CCceeeeeccccCCceeeccCCCCcE-EEeccCCcCCCCCCCCC
Confidence 89999999999743 222 2223334 66799999988 6667777644 44 355555332 1111111
Q ss_pred CCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-------cccCCCceEEEECCCCc-EEEEeecCC---eE
Q 003205 172 EVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-------KVDDTLSQKMAVSPNGN-FVACFTHDG---RL 240 (839)
Q Consensus 172 ~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-------~~~~~~i~~ia~Spng~-~iA~~~~~g---~i 240 (839)
+..+.++|..-+.. ....++.++.+|.+.+||..... ......++.++..||+- .|++.++|. .|
T Consensus 159 ~~~~eI~~lsWNrk----vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pvi 234 (1049)
T KOG0307|consen 159 APPSEIKCLSWNRK----VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVI 234 (1049)
T ss_pred CCcccceEeccchh----hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCcee
Confidence 11133444222111 11244555568889999999774 12234588999999984 466666654 48
Q ss_pred EEEecCC-CCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCCceEeccCCCeEEeecCCc-eEEEccCccee
Q 003205 241 VVNNTNF-SSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDG-VRILSNSSMEF 318 (839)
Q Consensus 241 ~i~ssd~-~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~~~l~~E~DG-vRIit~~~~~~ 318 (839)
.+|+.-| ...+.++..| +..+..|.||+.|. ...+++..|| +-+|..+..|.
T Consensus 235 qlWDlR~assP~k~~~~H-~~GilslsWc~~D~-------------------------~lllSsgkD~~ii~wN~~tgEv 288 (1049)
T KOG0307|consen 235 QLWDLRFASSPLKILEGH-QRGILSLSWCPQDP-------------------------RLLLSSGKDNRIICWNPNTGEV 288 (1049)
T ss_pred EeecccccCCchhhhccc-ccceeeeccCCCCc-------------------------hhhhcccCCCCeeEecCCCceE
Confidence 8998555 3345566556 45788999999854 3456677888 88999999999
Q ss_pred eeccchhhHhhhccCCCCh
Q 003205 319 LQRVPASTEQIFAIGSTSP 337 (839)
Q Consensus 319 l~~Vp~~~~~vf~igS~~p 337 (839)
|..+|.....+|.+..++-
T Consensus 289 l~~~p~~~nW~fdv~w~pr 307 (1049)
T KOG0307|consen 289 LGELPAQGNWCFDVQWCPR 307 (1049)
T ss_pred eeecCCCCcceeeeeecCC
Confidence 9999998888999877643
No 183
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.23 E-value=0.00012 Score=77.80 Aligned_cols=167 Identities=10% Similarity=0.218 Sum_probs=104.6
Q ss_pred CceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCC-CCccccCCCCCccccccCeEEEEEEC
Q 003205 65 LRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWG 142 (839)
Q Consensus 65 ~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~ 142 (839)
...+++++. .+..|-.+.+. ..|+++.++. .+|+++.++. +++||+. -+++.+...-+.. ..++....++.
T Consensus 67 pr~Lkv~~~Kk~~~ICe~~fp---t~IL~VrmNr-~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n--~~gl~AlS~n~ 139 (391)
T KOG2110|consen 67 PRKLKVVHFKKKTTICEIFFP---TSILAVRMNR-KRLVVCLEES-IYIYDIKDMKLLHTIETTPPN--PKGLCALSPNN 139 (391)
T ss_pred CceEEEEEcccCceEEEEecC---CceEEEEEcc-ceEEEEEccc-EEEEecccceeehhhhccCCC--ccceEeeccCC
Confidence 367888884 67788888763 6899999984 4566666655 8899864 4444433211111 45666666665
Q ss_pred CeEEEEe----cCCeEEEEecCCCceE-EEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEE-EecC-Ccc---
Q 003205 143 NGVVCVT----EANRYFCMADFATMKV-CELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILM-LDED-GVQ--- 212 (839)
Q Consensus 143 ~G~v~~t----~~~~~~~v~~~~~~~~-~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l-~~~~-~~~--- 212 (839)
++..++- ..|+++..+-. .-++ ..+. . +... .+++ +||++|.++++++..|||.. ++.. |..
T Consensus 140 ~n~ylAyp~s~t~GdV~l~d~~-nl~~v~~I~---a-H~~~-lAal--afs~~G~llATASeKGTVIRVf~v~~G~kl~e 211 (391)
T KOG2110|consen 140 ANCYLAYPGSTTSGDVVLFDTI-NLQPVNTIN---A-HKGP-LAAL--AFSPDGTLLATASEKGTVIRVFSVPEGQKLYE 211 (391)
T ss_pred CCceEEecCCCCCceEEEEEcc-cceeeeEEE---e-cCCc-eeEE--EECCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence 5544443 23455433322 1111 1111 0 1111 2222 57779999999999998754 5544 433
Q ss_pred --c-ccCCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 213 --K-VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 213 --~-~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
+ .....|.+++|||++++||..+.++||+|+.-+
T Consensus 212 FRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 212 FRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred eeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 2 224458899999999999999999999999755
No 184
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=0.00018 Score=80.61 Aligned_cols=254 Identities=15% Similarity=0.231 Sum_probs=147.1
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCeE--EEEEeCCeEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQTL--ICVVQDGTVY 111 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~L--v~v~~dGtv~ 111 (839)
.-.+++.|.|..+|..+ .+++++||- ..|.-+.++..+ +.|.+++|+|...+ +.|.-.+++.
T Consensus 403 Vr~iSvdp~G~wlasGs------------dDGtvriWEi~TgRcvr~~~~d---~~I~~vaw~P~~~~~vLAvA~~~~~~ 467 (733)
T KOG0650|consen 403 VRSISVDPSGEWLASGS------------DDGTVRIWEIATGRCVRTVQFD---SEIRSVAWNPLSDLCVLAVAVGECVL 467 (733)
T ss_pred EEEEEecCCcceeeecC------------CCCcEEEEEeecceEEEEEeec---ceeEEEEecCCCCceeEEEEecCceE
Confidence 34788899999999987 489999999 688999999875 68999999998864 4555555566
Q ss_pred EEe-CCCCccc-------c-CCCCCccc--------------cccC----------eEEEEEECCeEEEEecC----CeE
Q 003205 112 RYN-IHAELIE-------P-NASMGKEC--------------FEEN----------VVECVFWGNGVVCVTEA----NRY 154 (839)
Q Consensus 112 l~~-~~G~~~~-------~-~~g~~~~~--------------~~~~----------V~~~~~~~~G~v~~t~~----~~~ 154 (839)
+-| ..|.-+. + ..+.+.+. ++.+ |.++..+..|--++|.. .+-
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS 547 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence 665 5773211 1 11111110 1111 11222233444443321 122
Q ss_pred EEEecCCCceEEEcCCCCCC-CCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCC
Q 003205 155 FCMADFATMKVCELARPEVE-ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNG 228 (839)
Q Consensus 155 ~~v~~~~~~~~~~l~~~~~~-~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng 228 (839)
++|..+.... ...++. ......++ .|.|..... +++....|.+.|...+. ......+..|+++|+|
T Consensus 548 VliHQLSK~~----sQ~PF~kskG~vq~v---~FHPs~p~l-fVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~G 619 (733)
T KOG0650|consen 548 VLIHQLSKRK----SQSPFRKSKGLVQRV---KFHPSKPYL-FVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNG 619 (733)
T ss_pred EEEEeccccc----ccCchhhcCCceeEE---EecCCCceE-EEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCC
Confidence 3333332111 111221 11221223 333344444 45566668888877654 3345678999999999
Q ss_pred cEEEEeecCCeEEEEecCCCCc-cccccCCCCCCCC---------ceeeecCceEEEEe-----cCE-----E----EEE
Q 003205 229 NFVACFTHDGRLVVNNTNFSSP-VIDESCESALPPE---------QIAWCGMDSVLLYW-----NDM-----L----VMV 284 (839)
Q Consensus 229 ~~iA~~~~~g~i~i~ssd~~~~-l~e~~~~~~~~p~---------~~~WcG~d~vv~~~-----~~~-----l----~li 284 (839)
..|.+++.++.+..++-|++.+ +.....+. .... =|+=|.+|+.+..| +|. | .|-
T Consensus 620 Dnli~gs~d~k~~WfDldlsskPyk~lr~H~-~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~ 698 (733)
T KOG0650|consen 620 DNLILGSYDKKMCWFDLDLSSKPYKTLRLHE-KAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR 698 (733)
T ss_pred CeEEEecCCCeeEEEEcccCcchhHHhhhhh-hhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc
Confidence 9999999999987777777643 21111121 1112 23333555665544 332 2 355
Q ss_pred cCCCC------ceEeccCCCeEEeecCCc-eEEEc
Q 003205 285 APQAE------PVQYFYDEPLVLIPECDG-VRILS 312 (839)
Q Consensus 285 g~~~~------~v~f~~~~~~~l~~E~DG-vRIit 312 (839)
|+... .+.|-+..+-++++.-|| ||+||
T Consensus 699 gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 699 GHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred CceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 55432 455777788889999998 99987
No 185
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=1.1e-05 Score=86.94 Aligned_cols=146 Identities=14% Similarity=0.159 Sum_probs=90.8
Q ss_pred EEEeecCCCe-EEEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCce-EEE
Q 003205 91 IGMSWSEDQT-LICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMK-VCE 167 (839)
Q Consensus 91 ~~~~fs~de~-Lv~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~-~~~ 167 (839)
..|+|++||. |.++..||++|+|++ .-+..-+...| ...|-+..|++||.++++-+.+.-.||+.+... ..+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~-----~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAH-----HAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhh-----cCccccceeCCCCcEEEEecCCceEEEEeccCchhhh
Confidence 6788999864 689999999999994 33333334444 556899999999999998776666666655331 111
Q ss_pred cCCCCCCCCCceEEEeCCCCCCCC---cEEEEEEe--CCeEEE-----EecCCc----cc-ccCCCceEEEECCCCcEEE
Q 003205 168 LARPEVEELPHCVAVIEPKYTMTG---SVEVLIGT--DAGILM-----LDEDGV----QK-VDDTLSQKMAVSPNGNFVA 232 (839)
Q Consensus 168 l~~~~~~~~~~~w~vi~~~~S~~~---~~~v~~s~--d~tv~l-----~~~~~~----~~-~~~~~i~~ia~Spng~~iA 232 (839)
..+ ....|..-.-.|+.|+ .+.+.+.. .+.|.+ |+-+.. +. .....|+.|++|+||+++|
T Consensus 223 ~t~-----~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~A 297 (398)
T KOG0771|consen 223 KTP-----FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLA 297 (398)
T ss_pred cCC-----cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEE
Confidence 110 1112222222455555 22222222 333333 333211 12 2345799999999999999
Q ss_pred EeecCCeEEEEecC
Q 003205 233 CFTHDGRLVVNNTN 246 (839)
Q Consensus 233 ~~~~~g~i~i~ssd 246 (839)
++|.+|-+-|+...
T Consensus 298 lGT~dGsVai~~~~ 311 (398)
T KOG0771|consen 298 LGTMDGSVAIYDAK 311 (398)
T ss_pred EeccCCcEEEEEec
Confidence 99999998888643
No 186
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.20 E-value=5.3e-05 Score=85.99 Aligned_cols=285 Identities=13% Similarity=0.142 Sum_probs=170.8
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC-CCceeEEEecCCCCCeEEEeecCCCeE-EEEE--eCCeEE
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISETVWKNPGGRLIGMSWSEDQTL-ICVV--QDGTVY 111 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~--~dGtv~ 111 (839)
..|||||+|..+|+.- ....|.+++|+.. -..+..+.-|. -.+.+++|+|.++. ++|. -|=.|.
T Consensus 82 t~vAfS~~GryvatGE----------cG~~pa~kVw~la~h~vVAEfvdHK--Y~vtcvaFsp~~kyvvSVGsQHDMIVn 149 (1080)
T KOG1408|consen 82 TCVAFSQNGRYVATGE----------CGRTPASKVWSLAFHGVVAEFVDHK--YNVTCVAFSPGNKYVVSVGSQHDMIVN 149 (1080)
T ss_pred eEEEEcCCCcEEEecc----------cCCCccceeeeeccccchhhhhhcc--ccceeeeecCCCcEEEeeccccceEEE
Confidence 4899999999999863 1247899999953 33677787777 89999999999985 5444 355688
Q ss_pred EEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCce----EEEcCC-CC-CC-----------
Q 003205 112 RYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMK----VCELAR-PE-VE----------- 174 (839)
Q Consensus 112 l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~----~~~l~~-~~-~~----------- 174 (839)
+|++.-+..--+ + -+...|..+.|+.+|-.++|..++=+.+|+++..+ +.+|+. .. ++
T Consensus 150 v~dWr~N~~~as---n--kiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~ava 224 (1080)
T KOG1408|consen 150 VNDWRVNSSGAS---N--KISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVA 224 (1080)
T ss_pred hhhhhhcccccc---c--ccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhh
Confidence 887653331111 0 01445778899999988888765433333333221 122211 00 00
Q ss_pred -----CCCceEEEeCC----CCCC--------------------CCcEEEEEEeCCeEEEEecCCcc------c------
Q 003205 175 -----ELPHCVAVIEP----KYTM--------------------TGSVEVLIGTDAGILMLDEDGVQ------K------ 213 (839)
Q Consensus 175 -----~~~~~w~vi~~----~~S~--------------------~~~~~v~~s~d~tv~l~~~~~~~------~------ 213 (839)
-..++.++-.+ .||. +...++-.-.+|+|.+++..... +
T Consensus 225 Cg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~ 304 (1080)
T KOG1408|consen 225 CGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGS 304 (1080)
T ss_pred hcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhcccccccccccc
Confidence 01122322110 0221 22344444458888888766321 0
Q ss_pred --------------ccCCC---ceEEEECCCCcEEEEeecCCeEEEEecC-CCC---cc-------cccc-------CC-
Q 003205 214 --------------VDDTL---SQKMAVSPNGNFVACFTHDGRLVVNNTN-FSS---PV-------IDES-------CE- 257 (839)
Q Consensus 214 --------------~~~~~---i~~ia~Spng~~iA~~~~~g~i~i~ssd-~~~---~l-------~e~~-------~~- 257 (839)
..++. -.++.|+|..+.+.+.-.|..|+||+-+ ..+ .. |-++ .+
T Consensus 305 d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~ 384 (1080)
T KOG1408|consen 305 DTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHS 384 (1080)
T ss_pred chhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccC
Confidence 01111 2478899888888887788899999742 111 10 1111 11
Q ss_pred ---CCCCCCceeeecCceEEEEecCE------E-----------EEE-------------------------cCC-C-Cc
Q 003205 258 ---SALPPEQIAWCGMDSVLLYWNDM------L-----------VMV-------------------------APQ-A-EP 290 (839)
Q Consensus 258 ---~~~~p~~~~WcG~d~vv~~~~~~------l-----------~li-------------------------g~~-~-~~ 290 (839)
.-.+|.-+.=|.+|.++-.|+-. + .++ ++. | ..
T Consensus 385 ~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~ 464 (1080)
T KOG1408|consen 385 PTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRA 464 (1080)
T ss_pred cccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEE
Confidence 12334567889988888888531 1 110 000 1 02
Q ss_pred eEeccCCCeEEeecCCc-eEEEccCcceeeeccchhhHhhhccCCCCh
Q 003205 291 VQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIGSTSP 337 (839)
Q Consensus 291 v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~~~~vf~igS~~p 337 (839)
+.-++++.-....+.-| +||++..+.+++-.+..|-..|.....+.|
T Consensus 465 ~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p 512 (1080)
T KOG1408|consen 465 LAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFP 512 (1080)
T ss_pred EEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCc
Confidence 34444555556666667 999999999999999999999998887777
No 187
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.18 E-value=8.7e-05 Score=80.80 Aligned_cols=248 Identities=10% Similarity=0.095 Sum_probs=157.6
Q ss_pred eeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEe-CCCCcccc-----------------CC-CCCccccccCeEE
Q 003205 78 ISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYN-IHAELIEP-----------------NA-SMGKECFEENVVE 137 (839)
Q Consensus 78 l~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~-~~G~~~~~-----------------~~-g~~~~~~~~~V~~ 137 (839)
+..+.-|. -.+++|.+|||.. .++++.||+|.=|+ ..|+-.++ .. +| ...|+.
T Consensus 135 ~~~~~~H~--~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h-----~keil~ 207 (479)
T KOG0299|consen 135 FRVIGKHQ--LSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGH-----VKEILT 207 (479)
T ss_pred ceeecccc--CcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccc-----cceeEE
Confidence 45566677 7899999999987 58999999999996 45652211 11 23 345788
Q ss_pred EEEECCeEEEEecCCe-EEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----
Q 003205 138 CVFWGNGVVCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---- 212 (839)
Q Consensus 138 ~~~~~~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~---- 212 (839)
+.++++|..++|+..+ .+.||+..+.....- + ..|+=.|..-.|=..-.-...++.|.+|.+|+.+...
T Consensus 208 ~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~----~--~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet 281 (479)
T KOG0299|consen 208 LAVSSDGKYLATGGRDRHVQIWDCDTLEHVKV----F--KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET 281 (479)
T ss_pred EEEcCCCcEEEecCCCceEEEecCcccchhhc----c--cccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHH
Confidence 9999999999998764 456787664332221 0 1122222222222233456677889999999988654
Q ss_pred -cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeee--------cCceEEEEecC----
Q 003205 213 -KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC--------GMDSVLLYWND---- 279 (839)
Q Consensus 213 -~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~Wc--------G~d~vv~~~~~---- 279 (839)
-+|+..|..|..+.-++.+..+..|.|+.+|..- .+.-.-|..+ .+.+.-+++. ++|..++.|.-
T Consensus 282 lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~-~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKk 359 (479)
T KOG0299|consen 282 LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGG-EGSIDCVAFINDEHFVSGSDNGSIALWSLLKKK 359 (479)
T ss_pred HhCCccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCC-CCCeeeEEEecccceeeccCCceEEEeeecccC
Confidence 5899999999999998888888899999999853 2222235444 3345545444 46677777853
Q ss_pred EEEEE------cCCCC--ceEec-------cCCCeEEeecCCc-eEEEccCc----ceeeeccchhhHhhhccCCCChhh
Q 003205 280 MLVMV------APQAE--PVQYF-------YDEPLVLIPECDG-VRILSNSS----MEFLQRVPASTEQIFAIGSTSPAA 339 (839)
Q Consensus 280 ~l~li------g~~~~--~v~f~-------~~~~~~l~~E~DG-vRIit~~~----~~~l~~Vp~~~~~vf~igS~~pga 339 (839)
.|+.. .|..+ ...|| +.+..++++..|| ||+|-.+. +++|..+| ...-|..+.+...|.
T Consensus 360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGK 438 (479)
T ss_pred ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCC
Confidence 22211 11111 11122 2356778888998 99997653 57777776 444455555555554
Q ss_pred hH
Q 003205 340 LL 341 (839)
Q Consensus 340 ~L 341 (839)
.|
T Consensus 439 ~i 440 (479)
T KOG0299|consen 439 RI 440 (479)
T ss_pred EE
Confidence 33
No 188
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.18 E-value=8.8e-05 Score=81.97 Aligned_cols=191 Identities=9% Similarity=0.051 Sum_probs=112.1
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC--CCce---eEEEecCCCCCeEEEeecCCCeE--EEEEeC
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA--GVLI---SETVWKNPGGRLIGMSWSEDQTL--ICVVQD 107 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~--G~ll---~ti~~~~~~~~I~~~~fs~de~L--v~v~~d 107 (839)
...++++|+|..+.+... .++.|.+|+.+ |.+. ..+.+. .....+.|+|+++. ++-..+
T Consensus 82 p~~i~~~~~g~~l~v~~~-----------~~~~v~v~~~~~~g~~~~~~~~~~~~---~~~~~~~~~p~g~~l~v~~~~~ 147 (330)
T PRK11028 82 PTHISTDHQGRFLFSASY-----------NANCVSVSPLDKDGIPVAPIQIIEGL---EGCHSANIDPDNRTLWVPCLKE 147 (330)
T ss_pred ceEEEECCCCCEEEEEEc-----------CCCeEEEEEECCCCCCCCceeeccCC---CcccEeEeCCCCCEEEEeeCCC
Confidence 357888999998888752 47889999653 6443 333221 34678889999974 344557
Q ss_pred CeEEEEeCC--CCcccc-----CCCCCccccccCeEEEEEECCeEEEEecC--CeEEEEecCCC--ce---EEEcCCCCC
Q 003205 108 GTVYRYNIH--AELIEP-----NASMGKECFEENVVECVFWGNGVVCVTEA--NRYFCMADFAT--MK---VCELARPEV 173 (839)
Q Consensus 108 Gtv~l~~~~--G~~~~~-----~~g~~~~~~~~~V~~~~~~~~G~v~~t~~--~~~~~v~~~~~--~~---~~~l~~~~~ 173 (839)
++|.+|++. |.+... .... ..+...+.|+++|..+...+ .+-..+++++. .. ...+...+.
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~~-----g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~ 222 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTVE-----GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPA 222 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecCC-----CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCC
Confidence 999999864 443211 1111 23346788999877664442 22222333321 11 122221111
Q ss_pred CCCCceEEEeCCCCCCCCcEEEEEEe-CCeEEEEecC--Ccc-------cccCCCceEEEECCCCcEEEEeec-CCeEEE
Q 003205 174 EELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDED--GVQ-------KVDDTLSQKMAVSPNGNFVACFTH-DGRLVV 242 (839)
Q Consensus 174 ~~~~~~w~vi~~~~S~~~~~~v~~s~-d~tv~l~~~~--~~~-------~~~~~~i~~ia~Spng~~iA~~~~-~g~i~i 242 (839)
+.....|.. .-.+||+|..+..... +++|.+|+.+ +.. ... .....+++||||++|...+. +++|.+
T Consensus 223 ~~~~~~~~~-~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v 300 (330)
T PRK11028 223 DFSDTRWAA-DIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISV 300 (330)
T ss_pred cCCCCccce-eEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEE
Confidence 111122421 1235669988777654 6788888764 221 111 23458999999999998886 789999
Q ss_pred EecC
Q 003205 243 NNTN 246 (839)
Q Consensus 243 ~ssd 246 (839)
|+.|
T Consensus 301 ~~~~ 304 (330)
T PRK11028 301 YEID 304 (330)
T ss_pred EEEc
Confidence 9765
No 189
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.17 E-value=0.00026 Score=81.29 Aligned_cols=165 Identities=13% Similarity=0.212 Sum_probs=101.5
Q ss_pred ceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeC-C--eEEEEeCC-CCccccCCCCCccccccCeEEEEE
Q 003205 66 RKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQD-G--TVYRYNIH-AELIEPNASMGKECFEENVVECVF 140 (839)
Q Consensus 66 ~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~d-G--tv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~ 140 (839)
..|.+++.+|.-...+.-+. +.+....|||||+ |+.++.+ | .+.+|++. |+...... . ...+....+
T Consensus 179 ~~l~~~d~~g~~~~~l~~~~--~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-~-----~g~~~~~~~ 250 (430)
T PRK00178 179 YTLQRSDYDGARAVTLLQSR--EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-F-----EGLNGAPAW 250 (430)
T ss_pred eEEEEECCCCCCceEEecCC--CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-C-----CCCcCCeEE
Confidence 36888999998777776555 7889999999997 5555533 3 47777876 43322111 1 112335678
Q ss_pred ECCeEEEE-ec--CC--eEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeC---CeEEEEecCCcc
Q 003205 141 WGNGVVCV-TE--AN--RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTD---AGILMLDEDGVQ 212 (839)
Q Consensus 141 ~~~G~v~~-t~--~~--~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d---~tv~l~~~~~~~ 212 (839)
+++|.-++ +. ++ ++|.+ +.++....++... +. ....|.|||||+.+++.+.. ..||.++..+..
T Consensus 251 SpDG~~la~~~~~~g~~~Iy~~-d~~~~~~~~lt~~-----~~--~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 251 SPDGSKLAFVLSKDGNPEIYVM-DLASRQLSRVTNH-----PA--IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred CCCCCEEEEEEccCCCceEEEE-ECCCCCeEEcccC-----CC--CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 88885443 32 23 46654 4444445555431 11 12346788899998888752 368888876443
Q ss_pred --cc--cCCCceEEEECCCCcEEEEeecC-C--eEEEEecC
Q 003205 213 --KV--DDTLSQKMAVSPNGNFVACFTHD-G--RLVVNNTN 246 (839)
Q Consensus 213 --~~--~~~~i~~ia~Spng~~iA~~~~~-g--~i~i~ssd 246 (839)
.. ........++||||+.||+.+.. | .|++++.+
T Consensus 323 ~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~ 363 (430)
T PRK00178 323 AERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQ 363 (430)
T ss_pred EEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECC
Confidence 11 12223467899999999998754 3 36666543
No 190
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.17 E-value=3.1e-05 Score=84.61 Aligned_cols=169 Identities=13% Similarity=0.131 Sum_probs=113.0
Q ss_pred cCCceEEEEcCCCCceeEEEecCCC-C----CeEEEeecCCCeEEEEEeCCeEEEEeCCCCc-cccCCCCCccccccCeE
Q 003205 63 SALRKLRIFNSAGVLISETVWKNPG-G----RLIGMSWSEDQTLICVVQDGTVYRYNIHAEL-IEPNASMGKECFEENVV 136 (839)
Q Consensus 63 ~~~~~I~iy~~~G~ll~ti~~~~~~-~----~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~-~~~~~g~~~~~~~~~V~ 136 (839)
..+..|++|--+|+ +.+++--... | =|.+..|| -.++++..+|+|+|||+.-++ .++.-+| +..|.
T Consensus 54 ~gdk~~~~~~K~g~-~~~Vp~~~k~~gd~~~Cv~~~s~S--~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh-----~stvt 125 (673)
T KOG4378|consen 54 AGDKVMRIKEKDGK-TPEVPRVRKLTGDNAFCVACASQS--LYEISGGQSGCVKIWDLRAKLIHRFLKDH-----QSTVT 125 (673)
T ss_pred CCceeEEEecccCC-CCccceeeccccchHHHHhhhhcc--eeeeccCcCceeeehhhHHHHHhhhccCC-----cceeE
Confidence 46899999999998 4444331100 1 24444555 457899999999999999887 6778888 77777
Q ss_pred EEEEECCeEEEEe--cCCeEEEEecCC-CceEEEcCCCCCCCCCceEEEeCCCCCCCCc-EEEEEEeCCeEEEEecCCcc
Q 003205 137 ECVFWGNGVVCVT--EANRYFCMADFA-TMKVCELARPEVEELPHCVAVIEPKYTMTGS-VEVLIGTDAGILMLDEDGVQ 212 (839)
Q Consensus 137 ~~~~~~~G~v~~t--~~~~~~~v~~~~-~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~-~~v~~s~d~tv~l~~~~~~~ 212 (839)
.+....+-.-+++ ..|+++. .+.. +.+...|.. ++.-.|---.||+... .+++++.+|+|-+||.+|..
T Consensus 126 ~v~YN~~DeyiAsvs~gGdiii-h~~~t~~~tt~f~~------~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s 198 (673)
T KOG4378|consen 126 YVDYNNTDEYIASVSDGGDIII-HGTKTKQKTTTFTI------DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS 198 (673)
T ss_pred EEEecCCcceeEEeccCCcEEE-EecccCccccceec------CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC
Confidence 6555333333333 3566653 3332 222223322 1111122235666654 66788889999999999986
Q ss_pred ------cccCCCceEEEECCCC-cEEEEeecCCeEEEEecC
Q 003205 213 ------KVDDTLSQKMAVSPNG-NFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 213 ------~~~~~~i~~ia~Spng-~~iA~~~~~g~i~i~ssd 246 (839)
..|..|-..|+|||.. .++|+.+.|..|.++++.
T Consensus 199 p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 199 PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred cccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 5688899999999987 478999999999999876
No 191
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.16 E-value=3.8e-05 Score=78.11 Aligned_cols=115 Identities=23% Similarity=0.349 Sum_probs=82.2
Q ss_pred EEeeccccccccCC-----CCCC----CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCC
Q 003205 16 RYYRKPELYQMRWK-----HIDL----SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNP 86 (839)
Q Consensus 16 ~~yr~~e~y~m~w~-----~~~l----~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~ 86 (839)
.||-..++|.|.-. .+.+ ....++.+|+|.-+|++.. ..+..|.||+..|+++.++. .
T Consensus 34 s~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g----------~~~~~v~lyd~~~~~i~~~~--~- 100 (194)
T PF08662_consen 34 SYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYG----------SMPAKVTLYDVKGKKIFSFG--T- 100 (194)
T ss_pred eEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEc----------cCCcccEEEcCcccEeEeec--C-
Confidence 47777788877421 1122 2568899999999998852 24679999999999999885 3
Q ss_pred CCCeEEEeecCCCeEEEEEe----CCeEEEEeCCC-CccccCCCCCccccccCeEEEEEECCeEEEEecC
Q 003205 87 GGRLIGMSWSEDQTLICVVQ----DGTVYRYNIHA-ELIEPNASMGKECFEENVVECVFWGNGVVCVTEA 151 (839)
Q Consensus 87 ~~~I~~~~fs~de~Lv~v~~----dGtv~l~~~~G-~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~ 151 (839)
+.+..+.|||+|+++++.. +|.+.+||... +... ... ...+..+.++|+|-.++|..
T Consensus 101 -~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~-~~~------~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 101 -QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS-TFE------HSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred -CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee-ccc------cCcEEEEEEcCCCCEEEEEE
Confidence 5667899999999654432 57899998762 2222 111 33467888899999998864
No 192
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.14 E-value=0.00011 Score=81.46 Aligned_cols=215 Identities=13% Similarity=0.076 Sum_probs=126.3
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhh--h----cc----cCCceEEEEcCCC-----CceeEEEecCCCCCeEEEee----
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQL--Y----AE----SALRKLRIFNSAG-----VLISETVWKNPGGRLIGMSW---- 95 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~--~----~~----~~~~~I~iy~~~G-----~ll~ti~~~~~~~~I~~~~f---- 95 (839)
.+..+.+|-|+-++-..+.+-.... + ++ .....+.+|+..| ++|....+.. ....+=+|
T Consensus 103 ~~~~~~~~~g~~~~~~s~~~sg~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~g--t~P~cHdfn~~~ 180 (636)
T KOG2394|consen 103 PNNRALAPVGSNGAPHSNANSGIVTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKG--TSPTCHDFNSFT 180 (636)
T ss_pred CCcceeccccCCCcccccccccceeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccC--CCCceecccccc
Confidence 3456777777666655443211000 0 00 1245577777775 2333333333 34445555
Q ss_pred -cCCC-eEEEEEeCCeEEEEeCCCCccccCCCCC--ccccccCeEEEEEEC--CeEEEE-ecCCeEEEEe-----cCCCc
Q 003205 96 -SEDQ-TLICVVQDGTVYRYNIHAELIEPNASMG--KECFEENVVECVFWG--NGVVCV-TEANRYFCMA-----DFATM 163 (839)
Q Consensus 96 -s~de-~Lv~v~~dGtv~l~~~~G~~~~~~~g~~--~~~~~~~V~~~~~~~--~G~v~~-t~~~~~~~v~-----~~~~~ 163 (839)
++.+ +|++...-|.|.+++..-+-....++.+ .+ ...|..++.-+ ++++++ -.+++.|..+ +...|
T Consensus 181 a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~--ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p 258 (636)
T KOG2394|consen 181 ATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLIN--KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAP 258 (636)
T ss_pred cCCCCcceEEeeccCceEEecchhhHHHHhhhhccccc--ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCC
Confidence 2445 4899999999998875432111111110 11 34566555433 455444 4678876552 11112
Q ss_pred eEEEcCCCC----------C-CCCCceEEE-----eCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEE
Q 003205 164 KVCELARPE----------V-EELPHCVAV-----IEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKM 222 (839)
Q Consensus 164 ~~~~l~~~~----------~-~~~~~~w~v-----i~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~i 222 (839)
.-..++++. . .++..+|.+ +.-.|||||+.++.++.||.+.+++-+... +.=-+....+
T Consensus 259 ~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCv 338 (636)
T KOG2394|consen 259 SYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCV 338 (636)
T ss_pred cccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEE
Confidence 211122111 0 034456765 333599999999999999999999988765 2334678999
Q ss_pred EECCCCcEEEEeecCCeEEEEecCCCCcccc
Q 003205 223 AVSPNGNFVACFTHDGRLVVNNTNFSSPVID 253 (839)
Q Consensus 223 a~Spng~~iA~~~~~g~i~i~ssd~~~~l~e 253 (839)
+.||||++||++++|--+.|||---.++++.
T Consensus 339 cWSPDGKyIvtGGEDDLVtVwSf~erRVVAR 369 (636)
T KOG2394|consen 339 CWSPDGKYIVTGGEDDLVTVWSFEERRVVAR 369 (636)
T ss_pred EEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence 9999999999999999999998554556555
No 193
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.14 E-value=0.0003 Score=81.13 Aligned_cols=164 Identities=14% Similarity=0.196 Sum_probs=98.6
Q ss_pred ceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEE-eCCe--EEEEeCCC-CccccCCCCCccccccCeEEEEE
Q 003205 66 RKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVV-QDGT--VYRYNIHA-ELIEPNASMGKECFEENVVECVF 140 (839)
Q Consensus 66 ~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~-~dGt--v~l~~~~G-~~~~~~~g~~~~~~~~~V~~~~~ 140 (839)
..|.+++.+|.-...+.... +.+.+..|||||+ |+.++ .+|. +++|++.+ +.....-. ........+
T Consensus 198 ~~l~i~d~dG~~~~~l~~~~--~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~------~g~~~~~~w 269 (448)
T PRK04792 198 YQLMIADYDGYNEQMLLRSP--EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF------PGINGAPRF 269 (448)
T ss_pred eEEEEEeCCCCCceEeecCC--CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC------CCCcCCeeE
Confidence 46788888887666666555 7888999999997 55444 3444 55667654 43221110 111235677
Q ss_pred ECCeEEEE-e--cCC--eEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe---CCeEEEEecCCcc
Q 003205 141 WGNGVVCV-T--EAN--RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT---DAGILMLDEDGVQ 212 (839)
Q Consensus 141 ~~~G~v~~-t--~~~--~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~---d~tv~l~~~~~~~ 212 (839)
+++|..++ + .++ ++|.+ +.++....++... . .....|.|||||+.+++.+. ...||+++..+..
T Consensus 270 SPDG~~La~~~~~~g~~~Iy~~-dl~tg~~~~lt~~-----~--~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 270 SPDGKKLALVLSKDGQPEIYVV-DIATKALTRITRH-----R--AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK 341 (448)
T ss_pred CCCCCEEEEEEeCCCCeEEEEE-ECCCCCeEECccC-----C--CCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 88886443 2 233 35554 4555555555431 1 11245678889999888775 2368888876443
Q ss_pred --cc--cCCCceEEEECCCCcEEEEeecC-C--eEEEEec
Q 003205 213 --KV--DDTLSQKMAVSPNGNFVACFTHD-G--RLVVNNT 245 (839)
Q Consensus 213 --~~--~~~~i~~ia~Spng~~iA~~~~~-g--~i~i~ss 245 (839)
.. ........++||||++|++.+.+ + .|++++.
T Consensus 342 ~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl 381 (448)
T PRK04792 342 VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDL 381 (448)
T ss_pred EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEEC
Confidence 22 22223457999999999998764 3 3555543
No 194
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.13 E-value=6.1e-05 Score=81.67 Aligned_cols=170 Identities=15% Similarity=0.102 Sum_probs=114.3
Q ss_pred ccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCC--eEEEEEeCCeEEEEeCC--CCc-cccCCCCCccccccCe
Q 003205 62 ESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQ--TLICVVQDGTVYRYNIH--AEL-IEPNASMGKECFEENV 135 (839)
Q Consensus 62 ~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de--~Lv~v~~dGtv~l~~~~--G~~-~~~~~g~~~~~~~~~V 135 (839)
++.|.||++|+ ..|++-.++..|. ++|-++.|.|.+ -|++++.||+|+++|.. ++. ..... ..+|
T Consensus 262 gsaD~TV~lWD~~~g~p~~s~~~~~--k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~-------~g~V 332 (463)
T KOG0270|consen 262 GSADKTVKLWDVDTGKPKSSITHHG--KKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF-------DGEV 332 (463)
T ss_pred cCCCceEEEEEcCCCCcceehhhcC--CceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe-------ccce
Confidence 45799999999 6899999999888 999999999976 37899999999999864 111 11111 2223
Q ss_pred EEEEE---ECCeEEEEecCCeEEEEecCCC-ceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCc
Q 003205 136 VECVF---WGNGVVCVTEANRYFCMADFAT-MKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGV 211 (839)
Q Consensus 136 ~~~~~---~~~G~v~~t~~~~~~~v~~~~~-~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~ 211 (839)
-.+.. +++-+++-|.+|.++...-.+. ...+.+... +.++++.++... .-++.++++.+++|++|+..+.
T Consensus 333 Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AH--d~~ISgl~~n~~----~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAH--DDEISGLSVNIQ----TPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred EEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEec--cCCcceEEecCC----CCcceeeccccceEEEEeecCC
Confidence 32222 2366677777888877653321 223333321 145666666443 4578899999999999998876
Q ss_pred cc-------ccCCCceEEEECCCCc-EEEEeecCCeEEEEecC
Q 003205 212 QK-------VDDTLSQKMAVSPNGN-FVACFTHDGRLVVNNTN 246 (839)
Q Consensus 212 ~~-------~~~~~i~~ia~Spng~-~iA~~~~~g~i~i~ssd 246 (839)
.. ...+.-+.+++-|+=. ++|+++.++.+.||+.-
T Consensus 407 ~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 407 SPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred CCcccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence 51 1223345556666643 57888888889999753
No 195
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.13 E-value=8.7e-05 Score=85.33 Aligned_cols=179 Identities=12% Similarity=0.186 Sum_probs=115.2
Q ss_pred eEEEeecC-CCe-EEEEEeCCeEEEEeCCC----CccccCCCCCccccccCeEEEEEEC-CeEEEEecCCe-EEEEecCC
Q 003205 90 LIGMSWSE-DQT-LICVVQDGTVYRYNIHA----ELIEPNASMGKECFEENVVECVFWG-NGVVCVTEANR-YFCMADFA 161 (839)
Q Consensus 90 I~~~~fs~-de~-Lv~v~~dGtv~l~~~~G----~~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~~~-~~~v~~~~ 161 (839)
..++.|.. +++ +++.+.+|.|.+||+.- ++++.+-.| +..|..+.|+. .--++++++++ ++..|++.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH-----~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR 164 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEH-----ERSANKLDFHSTEPNILISGSQDGTVKCWDLR 164 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhh-----ccceeeeeeccCCccEEEecCCCceEEEEeee
Confidence 34555664 445 47999999999998642 233334445 56688888876 66678888776 56677665
Q ss_pred CceEEEcCCCCCCCCCceEEEeCCCCCCCC-cEEEEEEeCCeEEEEecCCcc------cccCCCceEEEECCCCcEEEEe
Q 003205 162 TMKVCELARPEVEELPHCVAVIEPKYTMTG-SVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACF 234 (839)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~-~~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~Spng~~iA~~ 234 (839)
..+...... + .+=.|-...|||.- ...+.+..+|.+.+||..--. ..|.|||..+..+||+.+||++
T Consensus 165 ~~~S~~t~~----~--nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATG 238 (839)
T KOG0269|consen 165 SKKSKSTFR----S--NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATG 238 (839)
T ss_pred ccccccccc----c--cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeec
Confidence 322111110 0 11122223455544 455566668888999988542 5799999999999999999999
Q ss_pred ecCCeEEEEecCCCCccccccCCCCCCCCceee----------e--cCceEEEEecC
Q 003205 235 THDGRLVVNNTNFSSPVIDESCESALPPEQIAW----------C--GMDSVLLYWND 279 (839)
Q Consensus 235 ~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~W----------c--G~d~vv~~~~~ 279 (839)
+.|++++||..+-.+.-..+..+.-.+..-+.| | +.|+-|-.|+-
T Consensus 239 GRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDv 295 (839)
T KOG0269|consen 239 GRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDV 295 (839)
T ss_pred CCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEee
Confidence 999999999866344333333333334445555 4 56777777753
No 196
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.06 E-value=3.7e-05 Score=84.07 Aligned_cols=190 Identities=12% Similarity=0.117 Sum_probs=137.8
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEe--cCCCCCeEEEeecCCCeE-EEEEeCCeEEEE
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVW--KNPGGRLIGMSWSEDQTL-ICVVQDGTVYRY 113 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~--~~~~~~I~~~~fs~de~L-v~v~~dGtv~l~ 113 (839)
.+-..|+|..+-+.+ .-.++.||+..--. ..|+. ....-.-.+++-|||.++ +...+||.|+||
T Consensus 470 SckL~pdgrtLivGG------------eastlsiWDLAapT-prikaeltssapaCyALa~spDakvcFsccsdGnI~vw 536 (705)
T KOG0639|consen 470 SCKLLPDGRTLIVGG------------EASTLSIWDLAAPT-PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVW 536 (705)
T ss_pred eeEecCCCceEEecc------------ccceeeeeeccCCC-cchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEE
Confidence 445678888777765 46789999976422 22222 221124577889999997 688999999999
Q ss_pred eCCCCc-cccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCC
Q 003205 114 NIHAEL-IEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTG 191 (839)
Q Consensus 114 ~~~G~~-~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~ 191 (839)
|++.+- ...+.|| ++++..+-++++|.-+-|+.-+ ....|++.+. +++.. .... -.|.+-.++|++
T Consensus 537 DLhnq~~VrqfqGh-----tDGascIdis~dGtklWTGGlDntvRcWDlreg--rqlqq----hdF~-SQIfSLg~cP~~ 604 (705)
T KOG0639|consen 537 DLHNQTLVRQFQGH-----TDGASCIDISKDGTKLWTGGLDNTVRCWDLREG--RQLQQ----HDFS-SQIFSLGYCPTG 604 (705)
T ss_pred EcccceeeecccCC-----CCCceeEEecCCCceeecCCCccceeehhhhhh--hhhhh----hhhh-hhheecccCCCc
Confidence 998765 6778899 8899999999999888887653 3445554321 12211 1111 124555788899
Q ss_pred cEEEEEEeCCeEEEEecCCcc----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcc
Q 003205 192 SVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPV 251 (839)
Q Consensus 192 ~~~v~~s~d~tv~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l 251 (839)
..+++.-.++.+.+...++.. ..|..-|.++.|++.|++.++.+.|.-+-.|.+-++..+
T Consensus 605 dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasi 668 (705)
T KOG0639|consen 605 DWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 668 (705)
T ss_pred cceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccce
Confidence 988888888888888888765 345566999999999999999999999999988888777
No 197
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.06 E-value=9.6e-05 Score=84.02 Aligned_cols=237 Identities=13% Similarity=0.127 Sum_probs=137.8
Q ss_pred CCceEEEEcCCCC-ceeEEEecCCCCCeEEEeecCCCe----EEEEEeCCeEEEEeCCCCc---cccCCCCCccccccCe
Q 003205 64 ALRKLRIFNSAGV-LISETVWKNPGGRLIGMSWSEDQT----LICVVQDGTVYRYNIHAEL---IEPNASMGKECFEENV 135 (839)
Q Consensus 64 ~~~~I~iy~~~G~-ll~ti~~~~~~~~I~~~~fs~de~----Lv~v~~dGtv~l~~~~G~~---~~~~~g~~~~~~~~~V 135 (839)
..+.|-+|++.-. ...++++|. ++|.++.|-|..+ +|++..||+|.+|-+.-++ ..+..||.. .+
T Consensus 32 a~~~Iav~dp~k~~i~t~l~GH~--a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~-----~~ 104 (764)
T KOG1063|consen 32 AGPAIAVADPEKILIVTTLDGHV--ARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCK-----EC 104 (764)
T ss_pred CCceEEEeCcccceeEEeccCCc--cceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcce-----eE
Confidence 3677888887665 556689999 9999999999877 8999999999999765332 233334422 22
Q ss_pred EEEEEECCeEEEEec--CCeEEEEecCCCceEEEcCCCCCC---CCCceEEEeCCCCCCCCcEEEEEEe-CCeEEEEecC
Q 003205 136 VECVFWGNGVVCVTE--ANRYFCMADFATMKVCELARPEVE---ELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDED 209 (839)
Q Consensus 136 ~~~~~~~~G~v~~t~--~~~~~~v~~~~~~~~~~l~~~~~~---~~~~~w~vi~~~~S~~~~~~v~~s~-d~tv~l~~~~ 209 (839)
..+.. +.++++. +-....+|+.+.+....+.....+ --|-|.+.++. .+..+...+. +..|.+....
T Consensus 105 --~cv~a-~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~----~~~~lla~Ggs~~~v~~~s~~ 177 (764)
T KOG1063|consen 105 --VCVVA-RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKN----NKTFLLACGGSKFVVDLYSSS 177 (764)
T ss_pred --EEEEe-eeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhcc----CCcEEEEecCcceEEEEeccC
Confidence 23332 2233332 344556676644442222211111 12444444331 2222222222 2233333322
Q ss_pred C--cc-----cccCCCceEEEECCCCc---EEEEeecCCeEEEEecCC----CCccccccCCCCCCCCceeeecCceEEE
Q 003205 210 G--VQ-----KVDDTLSQKMAVSPNGN---FVACFTHDGRLVVNNTNF----SSPVIDESCESALPPEQIAWCGMDSVLL 275 (839)
Q Consensus 210 ~--~~-----~~~~~~i~~ia~Spng~---~iA~~~~~g~i~i~ssd~----~~~l~e~~~~~~~~p~~~~WcG~d~vv~ 275 (839)
. .. .+|...|..++|+--|. ++|+.++|.+|+||..-. ++...|..... .+.+-.+--.+.+.+
T Consensus 178 ~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~--~~~~~~f~~l~~i~~ 255 (764)
T KOG1063|consen 178 ADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTT--LSNLPVFMILEEIQY 255 (764)
T ss_pred CcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccccccc--ccCCceeeeeeeEEE
Confidence 1 11 68999999999998776 899999999999997422 22333333221 222222222223334
Q ss_pred EecCEEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEccCcc
Q 003205 276 YWNDMLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSNSSM 316 (839)
Q Consensus 276 ~~~~~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit~~~~ 316 (839)
...-+-+|.||... ++.|.+++-.+|++..|- +-||-.++.
T Consensus 256 ~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~ 299 (764)
T KOG1063|consen 256 RISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDEN 299 (764)
T ss_pred EEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCc
Confidence 45556778899886 677777777788888885 777776633
No 198
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.05 E-value=0.00014 Score=81.95 Aligned_cols=193 Identities=10% Similarity=0.120 Sum_probs=113.9
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeE--EEecCCCCCeEEEeecCCCe--EEEEEeCCe
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISE--TVWKNPGGRLIGMSWSEDQT--LICVVQDGT 109 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~t--i~~~~~~~~I~~~~fs~de~--Lv~v~~dGt 109 (839)
.+-++.+| |...-+.- +.|.+|++|+- .+++++. ..+|. +.|.+++|.|.+. +++++.||.
T Consensus 103 ifDl~wap-ge~~lVsa-----------sGDsT~r~Wdvk~s~l~G~~~~~GH~--~SvkS~cf~~~n~~vF~tGgRDg~ 168 (720)
T KOG0321|consen 103 IFDLKWAP-GESLLVSA-----------SGDSTIRPWDVKTSRLVGGRLNLGHT--GSVKSECFMPTNPAVFCTGGRDGE 168 (720)
T ss_pred eEeeccCC-CceeEEEc-----------cCCceeeeeeeccceeecceeecccc--cccchhhhccCCCcceeeccCCCc
Confidence 34556777 54433321 36999999995 4566776 78898 9999999999887 479999999
Q ss_pred EEEEeCCCCc--------cccCCCCCc-----ccc----------ccCeE---EEEEECCeEEEEecCC--eEEEEecCC
Q 003205 110 VYRYNIHAEL--------IEPNASMGK-----ECF----------EENVV---ECVFWGNGVVCVTEAN--RYFCMADFA 161 (839)
Q Consensus 110 v~l~~~~G~~--------~~~~~g~~~-----~~~----------~~~V~---~~~~~~~G~v~~t~~~--~~~~v~~~~ 161 (839)
|.|||+.-+. ..+..+|.. .++ ...|. ++.++.|-..+++.+. ....||++.
T Consensus 169 illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLR 248 (720)
T KOG0321|consen 169 ILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLR 248 (720)
T ss_pred EEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeec
Confidence 9999864211 111112211 000 11111 2445555556666543 356778775
Q ss_pred Cce-EEEcCCCCCC----C-----CCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----c---c--cCCCceEE
Q 003205 162 TMK-VCELARPEVE----E-----LPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----K---V--DDTLSQKM 222 (839)
Q Consensus 162 ~~~-~~~l~~~~~~----~-----~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----~---~--~~~~i~~i 222 (839)
.+. ..+....+.. . ...+.+ ++. .|..+..--.|++||.|+..+.. . + ...-+..=
T Consensus 249 k~~~~~r~ep~~~~~~~t~skrs~G~~nL~-lDs----sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks 323 (720)
T KOG0321|consen 249 KNYTAYRQEPRGSDKYPTHSKRSVGQVNLI-LDS----SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKS 323 (720)
T ss_pred ccccccccCCCcccCccCcccceeeeEEEE-ecC----CCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeee
Confidence 432 1111100100 0 111121 121 45555544459999999988653 1 1 11124566
Q ss_pred EECCCCcEEEEeecCCeEEEEecC
Q 003205 223 AVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 223 a~Spng~~iA~~~~~g~i~i~ssd 246 (839)
..||+|.+++.++.++..+||..+
T Consensus 324 ~lSpd~~~l~SgSsd~~ayiw~vs 347 (720)
T KOG0321|consen 324 ELSPDDCSLLSGSSDEQAYIWVVS 347 (720)
T ss_pred ecCCCCceEeccCCCcceeeeeec
Confidence 889999999999999987777654
No 199
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=0.0002 Score=75.84 Aligned_cols=194 Identities=16% Similarity=0.137 Sum_probs=125.4
Q ss_pred CCCCCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCC--eEEEEE
Q 003205 28 WKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQ--TLICVV 105 (839)
Q Consensus 28 w~~~~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de--~Lv~v~ 105 (839)
|.++|+. .+|..++--.+|++ ..|.+|+||+.+-+.-..++-.. ..+|.+|+|-|.+ +|+++-
T Consensus 96 ws~~dlr--~~aWhqH~~~fava------------~nddvVriy~ksst~pt~Lks~s-QrnvtclawRPlsaselavgC 160 (445)
T KOG2139|consen 96 WSEIDLR--GVAWHQHIIAFAVA------------TNDDVVRIYDKSSTCPTKLKSVS-QRNVTCLAWRPLSASELAVGC 160 (445)
T ss_pred hhhccee--eEeechhhhhhhhh------------ccCcEEEEeccCCCCCceecchh-hcceeEEEeccCCcceeeeee
Confidence 5555555 67777753333333 26899999998888777787665 3789999999976 477888
Q ss_pred eCCeEEEEe--CCCCcccc-CCCCC--ccc----cccCeEEEEEECCeEEEEecCCe--EEEEecCCCceEEEcCCCCCC
Q 003205 106 QDGTVYRYN--IHAELIEP-NASMG--KEC----FEENVVECVFWGNGVVCVTEANR--YFCMADFATMKVCELARPEVE 174 (839)
Q Consensus 106 ~dGtv~l~~--~~G~~~~~-~~g~~--~~~----~~~~V~~~~~~~~G~v~~t~~~~--~~~v~~~~~~~~~~l~~~~~~ 174 (839)
..| |-+|. ..+..... .++.. .++ -...|...+-.++|..++|++.. -+.+|+.+.....+|..-++
T Consensus 161 r~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~gl- 238 (445)
T KOG2139|consen 161 RAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGL- 238 (445)
T ss_pred cce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCC-
Confidence 877 66894 44444221 11100 000 13446666656699999998652 34567766544444542111
Q ss_pred CCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEe
Q 003205 175 ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (839)
Q Consensus 175 ~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~s 244 (839)
+..+ . -.+||||..+.-+..|++..+|+++..- ....+.+..-..||+|.+|-+.. .|.=.+++
T Consensus 239 gg~s---l--LkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~-sgsp~lys 307 (445)
T KOG2139|consen 239 GGFS---L--LKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC-SGSPRLYS 307 (445)
T ss_pred Ccee---e--EEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE-cCCceEEE
Confidence 1111 1 1578899999999999999999777542 45667999999999999887654 34333444
No 200
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=1.5e-05 Score=90.74 Aligned_cols=195 Identities=15% Similarity=0.173 Sum_probs=133.0
Q ss_pred EEEEEeCCeEEEEeCCCCc--cccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCce-EEEcCCCCCCCC
Q 003205 101 LICVVQDGTVYRYNIHAEL--IEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMK-VCELARPEVEEL 176 (839)
Q Consensus 101 Lv~v~~dGtv~l~~~~G~~--~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~-~~~l~~~~~~~~ 176 (839)
++++..|-.+-+|... +. ..-..+| +..|-.++|...-..+.++... .+.+|+++... .+.|. ++.
T Consensus 43 ~~~Gg~~~k~~L~~i~-kp~~i~S~~~h-----espIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt----gh~ 112 (825)
T KOG0267|consen 43 LVTGGEDEKVNLWAIG-KPNAITSLTGH-----ESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT----GHL 112 (825)
T ss_pred eccCCCceeecccccc-CCchhheeecc-----CCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhh----ccc
Confidence 5677778778788643 33 2224678 6788888998766666665544 77888887533 22221 111
Q ss_pred CceEEEeCCCCCCCCcEEEEEEeCCeEEEEecC--Ccc---cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcc
Q 003205 177 PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED--GVQ---KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPV 251 (839)
Q Consensus 177 ~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~--~~~---~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l 251 (839)
-.| ..-.|+|-|...+..+.|..+.+||.. ||. .+|.+-+..+.|||+|+.+|.+++|.+++||+.--++.+
T Consensus 113 ~~~---~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~ 189 (825)
T KOG0267|consen 113 LNI---TSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS 189 (825)
T ss_pred cCc---ceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccc
Confidence 222 222477788888778889999999976 775 567777889999999999999999999999997667788
Q ss_pred ccccCCCCCCCCceeee---------cCceEEEEecCE-EEEEcCCCC------ceEeccCCCeEEeecCCceE
Q 003205 252 IDESCESALPPEQIAWC---------GMDSVLLYWNDM-LVMVAPQAE------PVQYFYDEPLVLIPECDGVR 309 (839)
Q Consensus 252 ~e~~~~~~~~p~~~~Wc---------G~d~vv~~~~~~-l~lig~~~~------~v~f~~~~~~~l~~E~DGvR 309 (839)
.||.+++ .....+.+- |.|.++-.|+-+ ..+||..+. ...|..++..++..|-+.++
T Consensus 190 ~ef~~~e-~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 190 KEFKSHE-GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred ccccccc-ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhh
Confidence 8888662 333333332 789999999876 777775543 44555555555554444444
No 201
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.03 E-value=0.0012 Score=77.31 Aligned_cols=258 Identities=16% Similarity=0.170 Sum_probs=158.9
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC-----CceeEEEecCCCCCeEEEeecCCCe-EEEEEeCC
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-----VLISETVWKNPGGRLIGMSWSEDQT-LICVVQDG 108 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G-----~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dG 108 (839)
...+++||+|..+|.+. .+|.|.+|+..| .-...+.||. ..|.++.|++||. |.++...|
T Consensus 208 ~t~~~~spn~~~~Aa~d------------~dGrI~vw~d~~~~~~~~t~t~lHWH~--~~V~~L~fS~~G~~LlSGG~E~ 273 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGD------------SDGRILVWRDFGSSDDSETCTLLHWHH--DEVNSLSFSSDGAYLLSGGREG 273 (792)
T ss_pred ceeEEeccccceEEEec------------cCCcEEEEeccccccccccceEEEecc--cccceeEEecCCceEeecccce
Confidence 35799999999999986 578899999988 3466799999 9999999999997 68999999
Q ss_pred eEEEEeC-CCCccccCCCCCccccccCeEEEEEECCeE--EEEecCCeEEEEecC--CCce-EEEc--CCCCCCCCCceE
Q 003205 109 TVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGV--VCVTEANRYFCMADF--ATMK-VCEL--ARPEVEELPHCV 180 (839)
Q Consensus 109 tv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~--v~~t~~~~~~~v~~~--~~~~-~~~l--~~~~~~~~~~~w 180 (839)
...+|.+ .|+ .+|...- ...|..+.++++|- .+..+++.|..+..- .... ..-+ +.+.....+.+.
T Consensus 274 VLv~Wq~~T~~-kqfLPRL-----gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l 347 (792)
T KOG1963|consen 274 VLVLWQLETGK-KQFLPRL-----GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSL 347 (792)
T ss_pred EEEEEeecCCC-ccccccc-----CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccc
Confidence 9999975 344 4444333 55688999998554 455678887776532 1110 0001 000000112221
Q ss_pred E--E-eCCCCCCCCcEEEEEEeCCeEEEEecCCcc----------------cccCCCceEEEECCCCcEEEEeec-----
Q 003205 181 A--V-IEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----------------KVDDTLSQKMAVSPNGNFVACFTH----- 236 (839)
Q Consensus 181 ~--v-i~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----------------~~~~~~i~~ia~Spng~~iA~~~~----- 236 (839)
. + ++| .-+..++-+..++|-.+|..... ...+-++.+++.|-+|.++|++-.
T Consensus 348 ~t~~~idp----r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~ 423 (792)
T KOG1963|consen 348 TTGVSIDP----RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKF 423 (792)
T ss_pred ceeEEEcC----CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhh
Confidence 1 1 232 34556666666666665544221 123456889999999999998753
Q ss_pred ---CCe--EEEEecCCCCccccccCCC-------------CCCCCc--eeeecCceEEEEecC-------------EEEE
Q 003205 237 ---DGR--LVVNNTNFSSPVIDESCES-------------ALPPEQ--IAWCGMDSVLLYWND-------------MLVM 283 (839)
Q Consensus 237 ---~g~--i~i~ssd~~~~l~e~~~~~-------------~~~p~~--~~WcG~d~vv~~~~~-------------~l~l 283 (839)
+|+ ++.|..+-..+--...+.. ..++.. ..--|.|+++..|.- .-..
T Consensus 424 ~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~ 503 (792)
T KOG1963|consen 424 NFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKA 503 (792)
T ss_pred hccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEee
Confidence 333 6667544222111111110 001111 122377888877731 3566
Q ss_pred EcCCCC----ceEeccCCCeEEeecCCceEEEccCcc
Q 003205 284 VAPQAE----PVQYFYDEPLVLIPECDGVRILSNSSM 316 (839)
Q Consensus 284 ig~~~~----~v~f~~~~~~~l~~E~DGvRIit~~~~ 316 (839)
+|.+.. ...|+-||..+.++=-|-|-||..++.
T Consensus 504 i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 504 IGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred eeccccCcccchhhcCCCcEEEEecCCEEEEecCCCh
Confidence 664422 566777787777766667999999875
No 202
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.02 E-value=0.00018 Score=75.12 Aligned_cols=218 Identities=16% Similarity=0.140 Sum_probs=136.4
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC--CCC--ceeEEEec-C--CCCCeEEEeecCC-C-eEEEEEeC
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS--AGV--LISETVWK-N--PGGRLIGMSWSED-Q-TLICVVQD 107 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~--~G~--ll~ti~~~-~--~~~~I~~~~fs~d-e-~Lv~v~~d 107 (839)
.++|+|+|..|-.. .+..||+|+. -|. ..-+...+ . ..|-|-+++|+|- . .+++.+--
T Consensus 163 sL~Fs~DGeqlfaG-------------ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~ 229 (406)
T KOG2919|consen 163 SLQFSPDGEQLFAG-------------YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYG 229 (406)
T ss_pred eEEecCCCCeEeec-------------ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeeccc
Confidence 56666666665443 4789999996 343 22222223 1 1267899999994 3 47899999
Q ss_pred CeEEEEeCCCC-ccccCCCCCccccccCeEEEEEECCeEEEEecCCe--EEEEecCCCce--EEEcCCCCCCCC-CceEE
Q 003205 108 GTVYRYNIHAE-LIEPNASMGKECFEENVVECVFWGNGVVCVTEANR--YFCMADFATMK--VCELARPEVEEL-PHCVA 181 (839)
Q Consensus 108 Gtv~l~~~~G~-~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~--~~~v~~~~~~~--~~~l~~~~~~~~-~~~w~ 181 (839)
.++-||+-+|. .....-|| +.+|...++.++|--+.++... -+.+|++...+ +..|... .+.+ .+..-
T Consensus 230 q~~giy~~~~~~pl~llggh-----~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rh-v~~TNQRI~F 303 (406)
T KOG2919|consen 230 QRVGIYNDDGRRPLQLLGGH-----GGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERH-VGDTNQRILF 303 (406)
T ss_pred ceeeeEecCCCCceeeeccc-----CCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhh-ccCccceEEE
Confidence 99999976544 46667788 8999999999999988887653 34556654211 1111110 1111 22221
Q ss_pred EeCCCCCCCCcEEEEEEeCCeEEEEecCCcc------cccCCCceEEEECCCCcEEEEeecCCeEEEEecC-CCCccccc
Q 003205 182 VIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN-FSSPVIDE 254 (839)
Q Consensus 182 vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd-~~~~l~e~ 254 (839)
-+.| +|+.++..+.+|.|.+||..+-- ..+..-++.+++.|-=.++|+.+.. .+.-..+| -.+...|.
T Consensus 304 Dld~----~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq-r~f~~~~dD~ge~~~el 378 (406)
T KOG2919|consen 304 DLDP----KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ-RIFKYPKDDNGELETEL 378 (406)
T ss_pred ecCC----CCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc-eeecCCCcccccccccc
Confidence 2444 88999999999999999988631 4456668999999998888876543 23323333 12222222
Q ss_pred cCCCCCCCCceeeecCceEEEEec
Q 003205 255 SCESALPPEQIAWCGMDSVLLYWN 278 (839)
Q Consensus 255 ~~~~~~~p~~~~WcG~d~vv~~~~ 278 (839)
.......-.|+-||+-.++.+-|+
T Consensus 379 ~~~ad~n~~qlw~~y~~a~~~w~d 402 (406)
T KOG2919|consen 379 EEEADENEKQLWTGYVSALQVWMD 402 (406)
T ss_pred cchhhhhhhheeeeecccceeeec
Confidence 222233456888888777766554
No 203
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.01 E-value=0.00013 Score=82.38 Aligned_cols=166 Identities=12% Similarity=0.160 Sum_probs=119.4
Q ss_pred CCceEEEEcCCCC---ceeEEEecCCCCCeEEEee-cCCCeE-EEEEeCCeEEEEeCC-CC------c---cccCC--CC
Q 003205 64 ALRKLRIFNSAGV---LISETVWKNPGGRLIGMSW-SEDQTL-ICVVQDGTVYRYNIH-AE------L---IEPNA--SM 126 (839)
Q Consensus 64 ~~~~I~iy~~~G~---ll~ti~~~~~~~~I~~~~f-s~de~L-v~v~~dGtv~l~~~~-G~------~---~~~~~--g~ 126 (839)
.|-+|++|+..-. -+++|.-|. +-|.+++. -++..| ++++-|+.|.+|++. |. + ..-++ |+
T Consensus 93 sDtTVK~W~~~~~~~~c~stir~H~--DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~ 170 (735)
T KOG0308|consen 93 SDTTVKVWNAHKDNTFCMSTIRTHK--DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP 170 (735)
T ss_pred CCceEEEeecccCcchhHhhhhccc--chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC
Confidence 5899999996433 467788888 99999999 666665 799999999999875 31 1 11122 34
Q ss_pred CccccccCeEEEEEECCeEEEEecCC-eEEEEecCC-CceEEEcCCCCCCCCCceEEE-eCCCCCCCCcEEEEEEeCCeE
Q 003205 127 GKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFA-TMKVCELARPEVEELPHCVAV-IEPKYTMTGSVEVLIGTDAGI 203 (839)
Q Consensus 127 ~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~-~~~~~~l~~~~~~~~~~~w~v-i~~~~S~~~~~~v~~s~d~tv 203 (839)
...|.+..-.++|..++.++- +...+|+=. ..+..+|. +++...-++ +.. ||..++.++.||||
T Consensus 171 -----k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr----GHTdNVr~ll~~d----DGt~~ls~sSDgtI 237 (735)
T KOG0308|consen 171 -----KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR----GHTDNVRVLLVND----DGTRLLSASSDGTI 237 (735)
T ss_pred -----ccceeeeecCCcceEEEecCcccceEEeccccccceeeee----ccccceEEEEEcC----CCCeEeecCCCceE
Confidence 567888888899988888754 344555422 22333332 233333333 333 99999999999999
Q ss_pred EEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEe
Q 003205 204 LMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (839)
Q Consensus 204 ~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~s 244 (839)
.+||+.-+. ..|...++++..||+=+++-+++.||.|..-+
T Consensus 238 rlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 238 RLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred EeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecc
Confidence 999987543 57777899999999999999999999886643
No 204
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.01 E-value=0.0002 Score=75.45 Aligned_cols=170 Identities=12% Similarity=0.112 Sum_probs=110.9
Q ss_pred CCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCC--Ce-EEEEEeCCeEEEEeC--CCCccccCCCCCccccccCeEE
Q 003205 64 ALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSED--QT-LICVVQDGTVYRYNI--HAELIEPNASMGKECFEENVVE 137 (839)
Q Consensus 64 ~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~d--e~-Lv~v~~dGtv~l~~~--~G~~~~~~~g~~~~~~~~~V~~ 137 (839)
..+.|++|+ ..|+.+..++++. +.+..|.|..+ .+ +.+++.||+||+||+ +++..++..+. +.+-..
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~--~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~-----~~~~~f 120 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPP--ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQ-----QSGTPF 120 (376)
T ss_pred cCCeEEEEeccchhhhheecCCC--CcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccC-----CCCCcc
Confidence 479999999 4799999999998 89999999974 34 469999999999975 55554444332 111011
Q ss_pred EEEEC--CeEEEEec-----CCeEEEEecCCC-ce-EEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEec
Q 003205 138 CVFWG--NGVVCVTE-----ANRYFCMADFAT-MK-VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDE 208 (839)
Q Consensus 138 ~~~~~--~G~v~~t~-----~~~~~~v~~~~~-~~-~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~ 208 (839)
..|-. ++-++.++ +.-+.++|++.. .+ ...+.+.-- ...++....|. +.++++..+.||=|-++|.
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~-DDVT~lrFHP~----~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHN-DDVTQLRFHPS----DPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhcc-CcceeEEecCC----CCCeEEeecccceEEeeec
Confidence 22211 34444443 233455565542 12 222322111 23455544444 6789999999999999998
Q ss_pred CCcc--------cccCCCceEEEECCCC-cEEEEeecCCeEEEEec
Q 003205 209 DGVQ--------KVDDTLSQKMAVSPNG-NFVACFTHDGRLVVNNT 245 (839)
Q Consensus 209 ~~~~--------~~~~~~i~~ia~Spng-~~iA~~~~~g~i~i~ss 245 (839)
.+-. ..+...|..+.++.+| +.|-++|..++..+|.-
T Consensus 196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYEL 241 (376)
T ss_pred CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence 7543 2455669999998887 55777788888888864
No 205
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.01 E-value=0.00061 Score=84.63 Aligned_cols=215 Identities=17% Similarity=0.194 Sum_probs=131.2
Q ss_pred CCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEec--CCCCCeEEEeecCCCeE-EEEEeC
Q 003205 31 IDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWK--NPGGRLIGMSWSEDQTL-ICVVQD 107 (839)
Q Consensus 31 ~~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~--~~~~~I~~~~fs~de~L-v~v~~d 107 (839)
++.-.-.++.-|.|.+||.... ...+..|-+|-.+|-.-+.+... .....|..+.|+.|+++ ++...|
T Consensus 255 v~gLe~~l~WrPsG~lIA~~q~---------~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~ 325 (928)
T PF04762_consen 255 VDGLEGALSWRPSGNLIASSQR---------LPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED 325 (928)
T ss_pred CCCccCCccCCCCCCEEEEEEE---------cCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC
Confidence 3444558899999999999862 12578999999999999997664 21257999999999995 566655
Q ss_pred CeEEEEeCCCCc---cccCCCCCccccccCeEEEEEEC---CeEEEEecCCeEEEEecCCCceEEEcCCCCCCCCCceEE
Q 003205 108 GTVYRYNIHAEL---IEPNASMGKECFEENVVECVFWG---NGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVA 181 (839)
Q Consensus 108 Gtv~l~~~~G~~---~~~~~g~~~~~~~~~V~~~~~~~---~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~ 181 (839)
. |.+|... ++ ++..+.... ...+..+++.+ .-+.++|.++++..++ + .|.
T Consensus 326 ~-vqLWt~~-NYHWYLKqei~~~~---~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~-~------------------~~~ 381 (928)
T PF04762_consen 326 R-VQLWTRS-NYHWYLKQEIRFSS---SESVNFVKWDPEKPLRLHVLTSNGQYEIYD-F------------------AWD 381 (928)
T ss_pred C-ceEEEee-CCEEEEEEEEEccC---CCCCCceEECCCCCCEEEEEecCCcEEEEE-E------------------EEE
Confidence 5 9999532 22 111111100 22222233332 4455666655543221 0 133
Q ss_pred E-eCCCCCCCCcEEEEEEeCCeEEEEecCCcc---------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcc
Q 003205 182 V-IEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPV 251 (839)
Q Consensus 182 v-i~~~~S~~~~~~v~~s~d~tv~l~~~~~~~---------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l 251 (839)
+ ..+..+|+..-.|.+-.+.++.+-...... ..-..+|..++|||++..+|.++.||++.++..++....
T Consensus 382 v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~ 461 (928)
T PF04762_consen 382 VSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMW 461 (928)
T ss_pred EEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcc
Confidence 3 222233334444444455566554444332 124578999999999998999999999888875543211
Q ss_pred --------ccccC---------CCCCCCCceeeecCceEEEEec
Q 003205 252 --------IDESC---------ESALPPEQIAWCGMDSVLLYWN 278 (839)
Q Consensus 252 --------~e~~~---------~~~~~p~~~~WcG~d~vv~~~~ 278 (839)
.++.. .....+.++.|++++.+++.+.
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (928)
T PF04762_consen 462 SVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSD 505 (928)
T ss_pred cccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEe
Confidence 11211 1134568999999998776554
No 206
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=97.96 E-value=0.00015 Score=77.17 Aligned_cols=127 Identities=18% Similarity=0.275 Sum_probs=94.8
Q ss_pred CCCCCC-cEEEEEEeCCeEEEEecCCcc-------cccCCCceEEEECCCCcEEEEeecCCeEEEEecC---CCCccccc
Q 003205 186 KYTMTG-SVEVLIGTDAGILMLDEDGVQ-------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN---FSSPVIDE 254 (839)
Q Consensus 186 ~~S~~~-~~~v~~s~d~tv~l~~~~~~~-------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd---~~~~l~e~ 254 (839)
++||+. ++.+..+.||+|.+||..... +.|.+-|+.|+++-+..+||++.++|++.||+.. +++.+.+|
T Consensus 264 qWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f 343 (440)
T KOG0302|consen 264 QWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF 343 (440)
T ss_pred ccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeE
Confidence 456665 467788889999999988552 5678889999999999999999999999999742 45667788
Q ss_pred cCCCCCCCCceeee----------cCceEEEEecC---------------E------EEEEcCCCC----ceEeccC-CC
Q 003205 255 SCESALPPEQIAWC----------GMDSVLLYWND---------------M------LVMVAPQAE----PVQYFYD-EP 298 (839)
Q Consensus 255 ~~~~~~~p~~~~Wc----------G~d~vv~~~~~---------------~------l~lig~~~~----~v~f~~~-~~ 298 (839)
+-+ ..+...+.|. |.|..+..|+- . -+|+-|.|+ -+.|-.. ..
T Consensus 344 k~H-k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG 422 (440)
T KOG0302|consen 344 KYH-KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPG 422 (440)
T ss_pred Eec-cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCC
Confidence 877 5677899998 77888888841 1 133335454 4555554 34
Q ss_pred eEEeecCCceEEEcc
Q 003205 299 LVLIPECDGVRILSN 313 (839)
Q Consensus 299 ~~l~~E~DGvRIit~ 313 (839)
.++++-+||+-||-+
T Consensus 423 ~lvsTa~dGfnVfkt 437 (440)
T KOG0302|consen 423 LLVSTAIDGFNVFKT 437 (440)
T ss_pred eEEEecccceeEEEe
Confidence 678888999888754
No 207
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=97.95 E-value=0.00082 Score=78.71 Aligned_cols=255 Identities=16% Similarity=0.185 Sum_probs=139.7
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCe----EEEEEeCCeEE
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQT----LICVVQDGTVY 111 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~----Lv~v~~dGtv~ 111 (839)
.-++|+++..+-+. ....|+||+ ..|..+.++..|. ..+.++.+.|..+ +++.+.||+|+
T Consensus 21 ~avfSnD~k~l~~~-------------~~~~V~VyS~~Tg~~i~~l~~~~--a~l~s~~~~~~~~~~~~~~~~sl~G~I~ 85 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLC-------------TGNFVKVYSTATGECITSLEDHT--APLTSVIVLPSSENANYLIVCSLDGTIR 85 (792)
T ss_pred ccccccCCcEEEEe-------------eCCEEEEEecchHhhhhhccccc--CccceeeecCCCccceEEEEEecCccEE
Confidence 34566666666554 368899999 6899999999888 8999999998654 46999999999
Q ss_pred EEeC-CCCccccCCCCCccccccCeEEEEE-------------EC-CeEEEEecCCeE------EEEecCCCceEEEcCC
Q 003205 112 RYNI-HAELIEPNASMGKECFEENVVECVF-------------WG-NGVVCVTEANRY------FCMADFATMKVCELAR 170 (839)
Q Consensus 112 l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~-------------~~-~G~v~~t~~~~~------~~v~~~~~~~~~~l~~ 170 (839)
+|+. .|++.++.-- ...|....+ |. +-..+.+.+.+. +.+.-+.+.....+..
T Consensus 86 vwd~~~~~Llkt~~~------~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~ 159 (792)
T KOG1963|consen 86 VWDWSDGELLKTFDN------NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKE 159 (792)
T ss_pred EecCCCcEEEEEEec------CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhh
Confidence 9985 5666443221 122232222 11 111111111110 0000000000000000
Q ss_pred CCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCC--cc-------cccCCCceEEEECCCCcEEEEeecCCeEE
Q 003205 171 PEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDG--VQ-------KVDDTLSQKMAVSPNGNFVACFTHDGRLV 241 (839)
Q Consensus 171 ~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~--~~-------~~~~~~i~~ia~Spng~~iA~~~~~g~i~ 241 (839)
...|.+- + +++.|+...++ .+..++.|.... .. ..|.-+++..++||||+.+|.+-.||.|.
T Consensus 160 ---~~~~~~I-~----~~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~ 230 (792)
T KOG1963|consen 160 ---HQEPKSI-V----DNNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRIL 230 (792)
T ss_pred ---hcCCccE-E----EcCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEE
Confidence 0113322 1 23355544433 344456665443 11 35666689999999999999999999999
Q ss_pred EEecCCCC-----ccccccCCCCCCCCceeee---------cCceEEEEecCE----EEEEcCCC--CceEeccCCCeEE
Q 003205 242 VNNTNFSS-----PVIDESCESALPPEQIAWC---------GMDSVLLYWNDM----LVMVAPQA--EPVQYFYDEPLVL 301 (839)
Q Consensus 242 i~ssd~~~-----~l~e~~~~~~~~p~~~~Wc---------G~d~vv~~~~~~----l~lig~~~--~~v~f~~~~~~~l 301 (839)
+|. ||+. ....+.=| ......+.|. |.++|++.|..+ -+|-=-.+ .++.+++|+..+.
T Consensus 231 vw~-d~~~~~~~~t~t~lHWH-~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~s 308 (792)
T KOG1963|consen 231 VWR-DFGSSDDSETCTLLHWH-HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYS 308 (792)
T ss_pred EEe-ccccccccccceEEEec-ccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEE
Confidence 995 4442 11111112 1234455555 788888888642 11111111 1455566666654
Q ss_pred eecCCc-eEEEccCcceeeeccc
Q 003205 302 IPECDG-VRILSNSSMEFLQRVP 323 (839)
Q Consensus 302 ~~E~DG-vRIit~~~~~~l~~Vp 323 (839)
+.-.|. +-++....++..+.|.
T Consensus 309 l~~~DNqI~li~~~dl~~k~tIs 331 (792)
T KOG1963|consen 309 LVLEDNQIHLIKASDLEIKSTIS 331 (792)
T ss_pred EEecCceEEEEeccchhhhhhcc
Confidence 333464 7777775566666553
No 208
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=97.94 E-value=0.00017 Score=74.39 Aligned_cols=178 Identities=12% Similarity=0.088 Sum_probs=112.2
Q ss_pred CCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCe--EEEEEeCCeEEEEeCC---CCccccCCCC-----Ccc---
Q 003205 64 ALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQT--LICVVQDGTVYRYNIH---AELIEPNASM-----GKE--- 129 (839)
Q Consensus 64 ~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~--Lv~v~~dGtv~l~~~~---G~~~~~~~g~-----~~~--- 129 (839)
.++.|++-+ .+|.--.++.+|. +.|.++.|+|..+ |++++.||+||+||+. |-|....... ..+
T Consensus 166 r~~~VrLCDi~SGs~sH~LsGHr--~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ 243 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHTLSGHR--DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNT 243 (397)
T ss_pred CCCcEEEEeccCCcceeeecccc--CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccc
Confidence 578999999 6888888999999 9999999999776 5799999999999853 5442211111 000
Q ss_pred ccccCeEEEEEECCeEEEEecC-CeEEEEecCCCce--EEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEE
Q 003205 130 CFEENVVECVFWGNGVVCVTEA-NRYFCMADFATMK--VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILML 206 (839)
Q Consensus 130 ~~~~~V~~~~~~~~G~v~~t~~-~~~~~v~~~~~~~--~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~ 206 (839)
.-...|..+.+..+|.-+++-. .+-..+||.++.. .+.+....- +......+.. . +.+....+++..+++++++
T Consensus 244 ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~-n~~~~~~~~~-~-~~~s~vfv~~p~~~~lall 320 (397)
T KOG4283|consen 244 AHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIH-NQTTSFAVHI-Q-SMDSDVFVLFPNDGSLALL 320 (397)
T ss_pred cccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccc-cccccceEEE-e-ecccceEEEEecCCeEEEE
Confidence 0034455666666666655532 2223455544322 222221111 1111222321 1 4466788888889999998
Q ss_pred ecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 207 DEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 207 ~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
+.-+-. ..|...+..-++-||=+..-++..|++|..|...
T Consensus 321 ~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 321 NLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred EccCceEEEeeecccceeeEEeecCchhhhhccccCCcccccccc
Confidence 866432 4566667777788887777777788888888653
No 209
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.92 E-value=0.0036 Score=69.04 Aligned_cols=246 Identities=11% Similarity=0.017 Sum_probs=139.1
Q ss_pred EEcCCCCeEEEEecC-chhhhhhcccCCceEEEEc-CCCCceeEEEecCC-----CCCeEEEeecCCCeEEEEE--e-CC
Q 003205 39 ACAPFGGPIAVIRDD-SKIVQLYAESALRKLRIFN-SAGVLISETVWKNP-----GGRLIGMSWSEDQTLICVV--Q-DG 108 (839)
Q Consensus 39 a~sp~Gg~IA~~~d~-~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~-----~~~I~~~~fs~de~Lv~v~--~-dG 108 (839)
.+||+|+.+.++.-- ++. ..+.....|.+|+ .+++++.+|..-.. ......+++||||+.+-|+ + ++
T Consensus 52 ~~spDg~~lyva~~~~~R~---~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~ 128 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRI---ARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSP 128 (352)
T ss_pred eECCCCCEEEEEecccccc---ccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCC
Confidence 499999999988520 000 0122478999999 58899999986331 1235689999999865443 3 78
Q ss_pred eEEEEeCC-CCcc-ccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCC
Q 003205 109 TVYRYNIH-AELI-EPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPK 186 (839)
Q Consensus 109 tv~l~~~~-G~~~-~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~ 186 (839)
.|-++|+. ++.. +...+. ...-....+++..+...++....+.+-.+.... ..+.+.-.....-....|.
T Consensus 129 ~V~VvD~~~~kvv~ei~vp~-------~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~-~~~~~vf~~~~~~v~~rP~ 200 (352)
T TIGR02658 129 AVGVVDLEGKAFVRMMDVPD-------CYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPK-IKPTEVFHPEDEYLINHPA 200 (352)
T ss_pred EEEEEECCCCcEEEEEeCCC-------CcEEEEecCCccEEEeecCceEEEEecCCCceE-EeeeeeecCCccccccCCc
Confidence 99999864 5553 223322 111112233555555555554443322222111 1110100000011123345
Q ss_pred CCCCCcEEEEEEeCCeEEEEecCCcc-------c----------ccCCCceEEEECCCCcEEEEeec----------CCe
Q 003205 187 YTMTGSVEVLIGTDAGILMLDEDGVQ-------K----------VDDTLSQKMAVSPNGNFVACFTH----------DGR 239 (839)
Q Consensus 187 ~S~~~~~~v~~s~d~tv~l~~~~~~~-------~----------~~~~~i~~ia~Spng~~iA~~~~----------~g~ 239 (839)
|++.++..++++.+|+|+++|..+.. . -..+.+.-++++|+|+.+=.+.. .++
T Consensus 201 ~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~ 280 (352)
T TIGR02658 201 YSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF 280 (352)
T ss_pred eEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE
Confidence 67755678888888999999965432 0 01233556899988876554321 124
Q ss_pred EEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCCceEeccCCC-eE-EeecCCc-eEEEccCcc
Q 003205 240 LVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEP-LV-LIPECDG-VRILSNSSM 316 (839)
Q Consensus 240 i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~-~~-l~~E~DG-vRIit~~~~ 316 (839)
+|+++..-.+.+.+. .+|.....+.++.|+. .+ ...+.+| |-||...++
T Consensus 281 V~ViD~~t~kvi~~i----------------------------~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 281 LFVVDAKTGKRLRKI----------------------------ELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEEEECCCCeEEEEE----------------------------eCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 666655433333322 2344445667777766 33 4555677 999999989
Q ss_pred eeeeccc
Q 003205 317 EFLQRVP 323 (839)
Q Consensus 317 ~~l~~Vp 323 (839)
+.+.+|+
T Consensus 333 k~i~~i~ 339 (352)
T TIGR02658 333 KELSSVN 339 (352)
T ss_pred eEEeeec
Confidence 8888873
No 210
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=97.89 E-value=0.001 Score=73.20 Aligned_cols=189 Identities=17% Similarity=0.216 Sum_probs=123.1
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCC--ceeEEEecCCCCCeEEEee-cCCCe-E-EEEEe-C
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV--LISETVWKNPGGRLIGMSW-SEDQT-L-ICVVQ-D 107 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~--ll~ti~~~~~~~~I~~~~f-s~de~-L-v~v~~-d 107 (839)
....+.+.+.|..++..+ .++.+.+|+..+. .+..+..... ..+..+.+ ++++. . ++.+. |
T Consensus 67 ~i~~~~~~~~~~~~~~~~------------~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d 133 (466)
T COG2319 67 SITSIAFSPDGELLLSGS------------SDGTIKLWDLDNGEKLIKSLEGLHD-SSVSKLALSSPDGNSILLASSSLD 133 (466)
T ss_pred eEEEEEECCCCcEEEEec------------CCCcEEEEEcCCCceeEEEEeccCC-CceeeEEEECCCcceEEeccCCCC
Confidence 345677777777777765 5799999998877 5777777551 36777777 78776 4 44445 9
Q ss_pred CeEEEEeCCC--CccccCCCCCccccccCeEEEEEECCeEEEEecC--CeEEEEecCCC-ceEEEcCCCCCCCCCceEEE
Q 003205 108 GTVYRYNIHA--ELIEPNASMGKECFEENVVECVFWGNGVVCVTEA--NRYFCMADFAT-MKVCELARPEVEELPHCVAV 182 (839)
Q Consensus 108 Gtv~l~~~~G--~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~--~~~~~v~~~~~-~~~~~l~~~~~~~~~~~w~v 182 (839)
+++++|+..+ .......+| ...|..+.+.++|..++... .....+++... .....+.. -.....++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~-- 204 (466)
T COG2319 134 GTVKLWDLSTPGKLIRTLEGH-----SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG--HTDPVSSL-- 204 (466)
T ss_pred ccEEEEEecCCCeEEEEEecC-----cccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc--CCCceEEE--
Confidence 9999999875 555666667 66788899999886555543 33445555543 22223221 00122333
Q ss_pred eCCCCCCCCc-EEEEEEeCCeEEEEecCCcc--c----ccCCCceEEEECCCCcEEEEeecCCeEEEEecCCC
Q 003205 183 IEPKYTMTGS-VEVLIGTDAGILMLDEDGVQ--K----VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFS 248 (839)
Q Consensus 183 i~~~~S~~~~-~~v~~s~d~tv~l~~~~~~~--~----~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~ 248 (839)
.++|++. .++..+.|+++.+|+..... . .+.... -..|+|+|.+++..+.++.+.+|+....
T Consensus 205 ---~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 273 (466)
T COG2319 205 ---AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSS 273 (466)
T ss_pred ---EEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCC
Confidence 3335777 44444789999999765222 1 222222 2289999999999999999999986633
No 211
>KOG4328 consensus WD40 protein [Function unknown]
Probab=97.89 E-value=0.00038 Score=75.88 Aligned_cols=214 Identities=12% Similarity=0.119 Sum_probs=134.1
Q ss_pred ceeEEEecCCCCCeEEEeecCCCe--E-EEEEeCCeEEEEeCCCCc---cc--cCCCCCccccccCeEEEEEEC--CeEE
Q 003205 77 LISETVWKNPGGRLIGMSWSEDQT--L-ICVVQDGTVYRYNIHAEL---IE--PNASMGKECFEENVVECVFWG--NGVV 146 (839)
Q Consensus 77 ll~ti~~~~~~~~I~~~~fs~de~--L-v~v~~dGtv~l~~~~G~~---~~--~~~g~~~~~~~~~V~~~~~~~--~G~v 146 (839)
..+.++.+. ++|.++.|.|.+. + +++..-|+|=+||+.++. .. ...+| ...|....|+| +..+
T Consensus 178 ~~~v~kv~~--~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~h-----s~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 178 ILNVAKVTD--RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPH-----SGPVSGLKFSPANTSQI 250 (498)
T ss_pred ecceeEecc--cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccC-----CccccceEecCCChhhe
Confidence 455577777 9999999999775 4 588889999999986443 22 23345 45688889988 3334
Q ss_pred EEec-CCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecC--Ccc----cccCCCc
Q 003205 147 CVTE-ANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED--GVQ----KVDDTLS 219 (839)
Q Consensus 147 ~~t~-~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~--~~~----~~~~~~i 219 (839)
+.++ +|.+ ...+++......+.+ + .+...|- -.-+||.+....++++.=|..-+||.. +.. ..|...|
T Consensus 251 ~ssSyDGti-R~~D~~~~i~e~v~s--~-~~d~~~f-s~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 251 YSSSYDGTI-RLQDFEGNISEEVLS--L-DTDNIWF-SSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred eeeccCcee-eeeeecchhhHHHhh--c-Cccceee-eeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccc
Confidence 4333 4443 334444332222222 1 1233331 223677777777777776666667655 332 5677799
Q ss_pred eEEEECCCC-cEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCCceEeccCCC
Q 003205 220 QKMAVSPNG-NFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEP 298 (839)
Q Consensus 220 ~~ia~Spng-~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~ 298 (839)
..|++.|-. .++|+.+.|+|.+||+.- +. ... ..| ++-..++...+ .+..|++++-
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R--~l----~~K--~sp----------~lst~~HrrsV-----~sAyFSPs~g 382 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLR--QL----RGK--ASP----------FLSTLPHRRSV-----NSAYFSPSGG 382 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehh--hh----cCC--CCc----------ceeccccccee-----eeeEEcCCCC
Confidence 999999987 579999999999999632 11 111 112 11111111110 2677888877
Q ss_pred eEEeecCCc-eEEEcc----Ccceeeeccchh
Q 003205 299 LVLIPECDG-VRILSN----SSMEFLQRVPAS 325 (839)
Q Consensus 299 ~~l~~E~DG-vRIit~----~~~~~l~~Vp~~ 325 (839)
.++.+.-|. ||||+. ...+.+..+|-.
T Consensus 383 tl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn 414 (498)
T KOG4328|consen 383 TLLTTCQDNEIRVFDSSCISAKDEPLGTIPHN 414 (498)
T ss_pred ceEeeccCCceEEeecccccccCCccceeecc
Confidence 799999997 999999 455555555543
No 212
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=97.88 E-value=0.00026 Score=74.25 Aligned_cols=138 Identities=12% Similarity=0.129 Sum_probs=99.4
Q ss_pred CCceEEEEcCCCCc----eeEEEecCCCCCeEEEeecCC---Ce--EEEEEeCCeEEEEeC-CCCccccCCCCCcccccc
Q 003205 64 ALRKLRIFNSAGVL----ISETVWKNPGGRLIGMSWSED---QT--LICVVQDGTVYRYNI-HAELIEPNASMGKECFEE 133 (839)
Q Consensus 64 ~~~~I~iy~~~G~l----l~ti~~~~~~~~I~~~~fs~d---e~--Lv~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~ 133 (839)
..+.+.+|...|.. +.+..-..........+|+-| +. |+++..-|.||+.|+ .|++.....|| -.
T Consensus 62 G~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~gh-----G~ 136 (385)
T KOG1034|consen 62 GGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGH-----GG 136 (385)
T ss_pred CCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceecc-----Cc
Confidence 47889999976654 555443322356888889864 23 578889999999985 67888888999 66
Q ss_pred CeEEEEEECCe-EEEEec-CCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecC
Q 003205 134 NVVECVFWGNG-VVCVTE-ANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED 209 (839)
Q Consensus 134 ~V~~~~~~~~G-~v~~t~-~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~ 209 (839)
.|.++++.|+- ..+++. .-+-..+||+.+.....+-- + -..|--.|++.+||++|..++..+.|+++++|+..
T Consensus 137 sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG-G--~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 137 SINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG-G--VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred cchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec-c--cccccCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence 79999999944 445554 44567889988665544321 1 22333457777899999999999999999999887
No 213
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.11 Score=61.08 Aligned_cols=180 Identities=16% Similarity=0.237 Sum_probs=106.2
Q ss_pred CCeEEEeecCCCeEEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEecCCe--EEEEecCCCceE
Q 003205 88 GRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR--YFCMADFATMKV 165 (839)
Q Consensus 88 ~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~--~~~v~~~~~~~~ 165 (839)
+.+.+..++ +..++.++-+|.|++++.+|+. .+...|.... ..+=.-+.=+.||.|++++-+. -...-++.
T Consensus 40 D~is~~av~-~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~~-~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~---- 112 (846)
T KOG2066|consen 40 DAISCCAVH-DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSSI-LEGEYVASCSDDGKVVIGSLFTDDEITQYDFK---- 112 (846)
T ss_pred hHHHHHHhh-cceeeeccccceEEEEecCCcc-cccccccccc-cCCceEEEecCCCcEEEeeccCCccceeEecC----
Confidence 445666665 6678999999999999999997 3333331110 1111223335677666664321 11111111
Q ss_pred EEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecC--Ccc-----cccCCCceEEEECCCCcEEEEeecCC
Q 003205 166 CELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED--GVQ-----KVDDTLSQKMAVSPNGNFVACFTHDG 238 (839)
Q Consensus 166 ~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~--~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g 238 (839)
-++.. ..+.|.||.....-+..+...++++.... |.. ....|+|.+| +..|.+||.++++|
T Consensus 113 ---------rpiks-ial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i--~W~g~lIAWand~G 180 (846)
T KOG2066|consen 113 ---------RPIKS-IALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSI--KWRGNLIAWANDDG 180 (846)
T ss_pred ---------Cccee-EEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEE--EecCcEEEEecCCC
Confidence 12222 13677766555544444443335554333 222 2345778655 46788999999887
Q ss_pred eEEEEecCCCCccccccC-----CCCCCCCceeeecCceEEEEecCEEEEEcCC
Q 003205 239 RLVVNNTNFSSPVIDESC-----ESALPPEQIAWCGMDSVLLYWNDMLVMVAPQ 287 (839)
Q Consensus 239 ~i~i~ssd~~~~l~e~~~-----~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~ 287 (839)
+ .|++..+++.+....- ..+.-|-++.|-.++.+|+-|.+.|.+..-.
T Consensus 181 v-~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 181 V-KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred c-EEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence 5 4787777777644331 1233456999999999999999987766533
No 214
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=97.87 E-value=0.00021 Score=76.80 Aligned_cols=166 Identities=12% Similarity=0.109 Sum_probs=111.1
Q ss_pred eeEEEecCCCCCeEEEeecCCCe--EEEEEeCCeEEEEe----CCCC------ccccCCCCCccccccCeEEEEEECCeE
Q 003205 78 ISETVWKNPGGRLIGMSWSEDQT--LICVVQDGTVYRYN----IHAE------LIEPNASMGKECFEENVVECVFWGNGV 145 (839)
Q Consensus 78 l~ti~~~~~~~~I~~~~fs~de~--Lv~v~~dGtv~l~~----~~G~------~~~~~~g~~~~~~~~~V~~~~~~~~G~ 145 (839)
.-+|.||. ..++..+.|-++.. |+++..|..||+|- ..|+ +....-+| +..|..++|.++|-
T Consensus 5 ~~ei~wH~-~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H-----~~aVN~vRf~p~ge 78 (434)
T KOG1009|consen 5 PIEISWHD-HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRH-----TRAVNVVRFSPDGE 78 (434)
T ss_pred eeEEEecC-CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCC-----cceeEEEEEcCCcC
Confidence 34688987 47899999998764 78999999999993 2222 23344456 66799999999999
Q ss_pred EEEecC-CeEEEEecCCCceEEEcCCCCCCCCCceEEEe-----------CCCCCCCCcEEEEEEeCCeEEEEecC-Ccc
Q 003205 146 VCVTEA-NRYFCMADFATMKVCELARPEVEELPHCVAVI-----------EPKYTMTGSVEVLIGTDAGILMLDED-GVQ 212 (839)
Q Consensus 146 v~~t~~-~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi-----------~~~~S~~~~~~v~~s~d~tv~l~~~~-~~~ 212 (839)
.++++. +....+|-...-++. -.+......+..|.|. .-.++|++..++..+.|+++++||.. |..
T Consensus 79 lLASg~D~g~v~lWk~~~~~~~-~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l 157 (434)
T KOG1009|consen 79 LLASGGDGGEVFLWKQGDVRIF-DADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL 157 (434)
T ss_pred eeeecCCCceEEEEEecCcCCc-cccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee
Confidence 999964 322223322110000 0111111224446542 23378899999999999999999977 443
Q ss_pred ----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCc
Q 003205 213 ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSP 250 (839)
Q Consensus 213 ----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~ 250 (839)
..|..-+..++.-|-+++||..+.|...++.+....+.
T Consensus 158 ~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 158 LAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV 199 (434)
T ss_pred EeeccccccccceeecchhhhhhhhhccCcccceeeeeeeee
Confidence 45666789999999999999999887555544443433
No 215
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.13 Score=60.90 Aligned_cols=248 Identities=11% Similarity=0.125 Sum_probs=142.6
Q ss_pred cccccccEEeeccccccccCCCCCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCC
Q 003205 9 EWQLVYNRYYRKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGG 88 (839)
Q Consensus 9 ~W~~Lg~~~yr~~e~y~m~w~~~~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~ 88 (839)
+|.+. .+|..+++-+.+ ++.- .-.-.+++.||.||+.. .++.|-++|.+=+++..++.++ .
T Consensus 5 qWrrF--~lFq~~~i~~~~--~~~G-~~isc~~s~~~~vvigt------------~~G~V~~Ln~s~~~~~~fqa~~--~ 65 (933)
T KOG2114|consen 5 QWRRF--SLFQWKEIPSLE--NFVG-NAISCCSSSTGSVVIGT------------ADGRVVILNSSFQLIRGFQAYE--Q 65 (933)
T ss_pred hccee--eeeeeeecCCcc--cCCC-CceeEEcCCCceEEEee------------ccccEEEecccceeeehheecc--h
Confidence 46533 455555554311 1111 15678899999999986 6899999999989999999988 4
Q ss_pred CeEEEeecCCCe--EEEEEeCCe-----EEEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCC
Q 003205 89 RLIGMSWSEDQT--LICVVQDGT-----VYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFA 161 (839)
Q Consensus 89 ~I~~~~fs~de~--Lv~v~~dGt-----v~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~ 161 (839)
.|+.+=|..+++ |+++.+|++ +++|++.- ......++ -+...+++
T Consensus 66 siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek-~~~n~sP~-------c~~~~ri~-------------------- 117 (933)
T KOG2114|consen 66 SIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK-VDKNNSPQ-------CLYEHRIF-------------------- 117 (933)
T ss_pred hhhhHhhcccCceEEEEEeecCCCCceEEEEecccc-cCCCCCcc-------eeeeeeee--------------------
Confidence 477777887773 677777764 77786531 10000011 01111111
Q ss_pred CceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecC-----Ccc----cccCCCceEEEECCCCcEEE
Q 003205 162 TMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED-----GVQ----KVDDTLSQKMAVSPNGNFVA 232 (839)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~-----~~~----~~~~~~i~~ia~Spng~~iA 232 (839)
.++.| .+..|.+--+++. +-+++|..-.||.|++..-+ |.. ....+||+++++--+|+.+.
T Consensus 118 -----~~~np-~~~~p~s~l~Vs~----~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 118 -----TIKNP-TNPSPASSLAVSE----DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred -----ccCCC-CCCCcceEEEEEc----cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 11111 1122333222333 56777777778888887544 221 34568999999999998865
Q ss_pred EeecCCeEEEEecCCCCc--cccccCCCCCCCCceeee---cCceEEEEecCEEEEEcCCCCceEeccC-CCeE--Eeec
Q 003205 233 CFTHDGRLVVNNTNFSSP--VIDESCESALPPEQIAWC---GMDSVLLYWNDMLVMVAPQAEPVQYFYD-EPLV--LIPE 304 (839)
Q Consensus 233 ~~~~~g~i~i~ssd~~~~--l~e~~~~~~~~p~~~~Wc---G~d~vv~~~~~~l~lig~~~~~v~f~~~-~~~~--l~~E 304 (839)
++..+..+.+++.. ++. +...+.+ ...--+|. |....+|.-.+.+.++.+++....|.|+ |.-. ++..
T Consensus 188 Fv~Tt~~V~~y~l~-gr~p~~~~ld~~---G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~ 263 (933)
T KOG2114|consen 188 FVATTEQVMLYSLS-GRTPSLKVLDNN---GISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLVFS 263 (933)
T ss_pred EEEecceeEEEEec-CCCcceeeeccC---CccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecCCCeEEEEEEe
Confidence 55545556666654 333 2223322 11122222 1222455556678888888887777777 5443 3333
Q ss_pred CCceEEEccCcce
Q 003205 305 CDGVRILSNSSME 317 (839)
Q Consensus 305 ~DGvRIit~~~~~ 317 (839)
.+-+-+++.+.+-
T Consensus 264 ~g~~L~v~~~~~~ 276 (933)
T KOG2114|consen 264 FGLLLCVTTDKGT 276 (933)
T ss_pred cCEEEEEEccCCC
Confidence 3447777776443
No 216
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=97.84 E-value=0.00043 Score=74.47 Aligned_cols=193 Identities=17% Similarity=0.218 Sum_probs=121.3
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC--------C-----C----ceeEEEecCCCCCeEEEe
Q 003205 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA--------G-----V----LISETVWKNPGGRLIGMS 94 (839)
Q Consensus 32 ~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~--------G-----~----ll~ti~~~~~~~~I~~~~ 94 (839)
+-..+.|.++|+|..+|...| ++.|.+|-.. + + ....+..|. ..|.+++
T Consensus 65 ~~aVN~vRf~p~gelLASg~D------------~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~--~diydL~ 130 (434)
T KOG1009|consen 65 TRAVNVVRFSPDGELLASGGD------------GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHR--DDIYDLA 130 (434)
T ss_pred cceeEEEEEcCCcCeeeecCC------------CceEEEEEecCcCCccccchhhhCccceEEEEEecccc--cchhhhh
Confidence 345679999999999999986 4556666543 4 2 122345565 7899999
Q ss_pred ecCCCe-EEEEEeCCeEEEEeC-CCCccccCCCCCccc------------------------------------------
Q 003205 95 WSEDQT-LICVVQDGTVYRYNI-HAELIEPNASMGKEC------------------------------------------ 130 (839)
Q Consensus 95 fs~de~-Lv~v~~dGtv~l~~~-~G~~~~~~~g~~~~~------------------------------------------ 130 (839)
|+||+. +++.+-|.++++||. .|.+....-+|+--+
T Consensus 131 Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~ 210 (434)
T KOG1009|consen 131 WSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPA 210 (434)
T ss_pred ccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeee
Confidence 999998 579999999999986 455544333332000
Q ss_pred -----cccCeE-------------EEEEECCeEEEEecCCeEEE----------EecCC---CceEEEcCCCCCCCCCce
Q 003205 131 -----FEENVV-------------ECVFWGNGVVCVTEANRYFC----------MADFA---TMKVCELARPEVEELPHC 179 (839)
Q Consensus 131 -----~~~~V~-------------~~~~~~~G~v~~t~~~~~~~----------v~~~~---~~~~~~l~~~~~~~~~~~ 179 (839)
.+..+. ..+|+|+|..++|.++-+-. +-.-. -| .-.|+.+ ..|.
T Consensus 211 ~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP-~~~lp~~---~k~~- 285 (434)
T KOG1009|consen 211 KAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRP-AARLPSP---KKPA- 285 (434)
T ss_pred cccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCc-eeecCCC---Ccce-
Confidence 000000 45667899999887653211 11100 01 1112211 1111
Q ss_pred EEE--------eCCCCCCC-------CcEEEEEEeCCeEEEEecCCcc------cccCCCceEEEECCCCcEEEEeecCC
Q 003205 180 VAV--------IEPKYTMT-------GSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDG 238 (839)
Q Consensus 180 w~v--------i~~~~S~~-------~~~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~Spng~~iA~~~~~g 238 (839)
..| +.| +|.. -.+.+.++..+.||++|.+.+. .+|..+++.+++|+||..++.-+.||
T Consensus 286 lavr~~pVy~elrp-~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DG 364 (434)
T KOG1009|consen 286 LAVRFSPVYYELRP-LSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDG 364 (434)
T ss_pred EEEEeeeeEEEecc-ccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCC
Confidence 111 111 1111 1456777888889999988754 57889999999999999999999999
Q ss_pred eEEEEe
Q 003205 239 RLVVNN 244 (839)
Q Consensus 239 ~i~i~s 244 (839)
..-+.+
T Consensus 365 yCS~vt 370 (434)
T KOG1009|consen 365 FCSLVT 370 (434)
T ss_pred ceEEEE
Confidence 765554
No 217
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.83 E-value=0.0021 Score=77.77 Aligned_cols=248 Identities=12% Similarity=0.083 Sum_probs=141.3
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC------CCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCC
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA------GVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDG 108 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~------G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dG 108 (839)
...+.+|+|-..++.+ .|++||+|+.. |.-=+.+.|+...+++..+.+-++++ +++++.||
T Consensus 1053 k~a~s~~~~s~FvsgS------------~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1053 KLAVSSEHTSLFVSGS------------DDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred ceeecCCCCceEEEec------------CCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence 3555566667777765 59999999964 22334477774346787777777775 78999999
Q ss_pred eEEEEeCCC---Ccccc---CCCCCccccccCeEEEEEE----CC-eEEEEecCCeEEEEecCCCceEEEcCCCCCCCC-
Q 003205 109 TVYRYNIHA---ELIEP---NASMGKECFEENVVECVFW----GN-GVVCVTEANRYFCMADFATMKVCELARPEVEEL- 176 (839)
Q Consensus 109 tv~l~~~~G---~~~~~---~~g~~~~~~~~~V~~~~~~----~~-G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~- 176 (839)
.|++.+++- +...- -.....+ .+.|.++.-+ .+ +++++|..+.+..++-......+++... +.++
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~--~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~-~~hG~ 1197 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKK--DGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ-LRHGL 1197 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccC--CCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC-ccccc
Confidence 999886542 22111 1111111 3334443322 24 7777887777665432222233444321 1111
Q ss_pred CceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc------cccCCCceEEEECCCCc---EEEEee--cCCeEEEEec
Q 003205 177 PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGN---FVACFT--HDGRLVVNNT 245 (839)
Q Consensus 177 ~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~Spng~---~iA~~~--~~g~i~i~ss 245 (839)
.++- +++| .++..++....|.+.+||..=.. ..+..++.+|..-|-.+ .+..++ ..+.+-+|+-
T Consensus 1198 vTSi-~idp----~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1198 VTSI-VIDP----WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred eeEE-EecC----CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 2322 3444 78888888899999999988443 45668889998887765 222222 3455777752
Q ss_pred CCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCC--ceE---eccCCCeEEeecCCc-eEEEccCcc
Q 003205 246 NFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAE--PVQ---YFYDEPLVLIPECDG-VRILSNSSM 316 (839)
Q Consensus 246 d~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~--~v~---f~~~~~~~l~~E~DG-vRIit~~~~ 316 (839)
. .+.-....|-++++..+.|--..- ..+... ... +.-.+.+.+.+.-|+ ||-|....-
T Consensus 1273 ~------------~g~~~~vl~~s~~~p~ls~~~Ps~-~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1273 E------------TGLRQTVLWASDGAPILSYALPSN-DARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred c------------cCcceEEEEcCCCCcchhhhcccc-cCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 2 112345667777777666632111 111111 111 111245667777775 998887633
No 218
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=97.81 E-value=0.0033 Score=73.19 Aligned_cols=241 Identities=14% Similarity=0.136 Sum_probs=144.4
Q ss_pred ceEEEEcCCCCceeEEEecCCCCCeEEEeecCC-Ce-EEEEEeCCeEEEEeCCCCcc--cc-----CCCCCccccccCeE
Q 003205 66 RKLRIFNSAGVLISETVWKNPGGRLIGMSWSED-QT-LICVVQDGTVYRYNIHAELI--EP-----NASMGKECFEENVV 136 (839)
Q Consensus 66 ~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~d-e~-Lv~v~~dGtv~l~~~~G~~~--~~-----~~g~~~~~~~~~V~ 136 (839)
..+-||+..-..--....+. ...|.++.|.|. .. ++.+..+|.|-+||+.+... .. .-.| ...|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~-~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh-----~~~v~ 295 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLES-PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSH-----SEPVT 295 (555)
T ss_pred ceEEEEecCCCCCceEEEec-CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccC-----CcCeE
Confidence 37899997655444444444 378999999995 44 57999999999998654332 11 1122 33344
Q ss_pred EEEEEC---Ce--EEEEecCCeE--EEEecCCCceEEEcCCCCCCCCCceE---EEeCCCCCCCCcEEEEEEe-CCeEEE
Q 003205 137 ECVFWG---NG--VVCVTEANRY--FCMADFATMKVCELARPEVEELPHCV---AVIEPKYTMTGSVEVLIGT-DAGILM 205 (839)
Q Consensus 137 ~~~~~~---~G--~v~~t~~~~~--~~v~~~~~~~~~~l~~~~~~~~~~~w---~vi~~~~S~~~~~~v~~s~-d~tv~l 205 (839)
+.+|- .+ ++-...+|.+ |.+..+..|....+.++........| .+..-.|.+......+++. +|.|+.
T Consensus 296 -~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~ 374 (555)
T KOG1587|consen 296 -AVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK 374 (555)
T ss_pred -EEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence 33442 33 6666667875 55556555543333222110011111 1122234445555555555 777777
Q ss_pred EecCCcc-------------cccCCCceEEEECCCCcEEEEeecCCeEEEEecC-CCCccccccCCCCCCCCceeee---
Q 003205 206 LDEDGVQ-------------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN-FSSPVIDESCESALPPEQIAWC--- 268 (839)
Q Consensus 206 ~~~~~~~-------------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd-~~~~l~e~~~~~~~~p~~~~Wc--- 268 (839)
-+..|.. ..|.++|..|.+||=+..+-+.+.|.+++||+-+ -...+..++.+. .....++||
T Consensus 375 ~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~-~~v~~vaWSptr 453 (555)
T KOG1587|consen 375 GCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSP-DYVTDVAWSPTR 453 (555)
T ss_pred EeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhcc-ceeeeeEEcCcC
Confidence 5555432 3678999999999998766666669999999877 455666665552 236788998
Q ss_pred -------cCceEEEEecCEEEEEc---------CCCCceEeccCCCeEEeecCCc-eEEEccC
Q 003205 269 -------GMDSVLLYWNDMLVMVA---------PQAEPVQYFYDEPLVLIPECDG-VRILSNS 314 (839)
Q Consensus 269 -------G~d~vv~~~~~~l~lig---------~~~~~v~f~~~~~~~l~~E~DG-vRIit~~ 314 (839)
..|+.+-.|+-..---| +--..+.++.++..+.++.--| +.++.-.
T Consensus 454 pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 454 PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred ceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 34666777763222222 2222455555577777777777 7777654
No 219
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=97.80 E-value=0.0012 Score=66.66 Aligned_cols=167 Identities=14% Similarity=0.150 Sum_probs=104.5
Q ss_pred eEEEeecCCCe-EEEEEeCCeEEEEeCC----------CCc-cccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEE
Q 003205 90 LIGMSWSEDQT-LICVVQDGTVYRYNIH----------AEL-IEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCM 157 (839)
Q Consensus 90 I~~~~fs~de~-Lv~v~~dGtv~l~~~~----------G~~-~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v 157 (839)
|..=+|+|-.+ |+.+..+|++.+.++. |+. .....+| +..|.+.+|. +-+.+..++|.++-+
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqah-----dgpiy~~~f~-d~~Lls~gdG~V~gw 86 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAH-----DGPIYYLAFH-DDFLLSGGDGLVYGW 86 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeecccc-----CCCeeeeeee-hhheeeccCceEEEe
Confidence 44557899888 5799999999999654 333 2223455 6678888888 444555667776533
Q ss_pred -ec-CCCc-e---EEEcCCCC-CC----CCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceE
Q 003205 158 -AD-FATM-K---VCELARPE-VE----ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQK 221 (839)
Q Consensus 158 -~~-~~~~-~---~~~l~~~~-~~----~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ 221 (839)
|+ ..+. - .+.+..|- .+ ..+..+-+. |..+.+++++-|+.+|.||...-. ++|..-++.
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ld-----P~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~ 161 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLD-----PSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHS 161 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEec-----cCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeee
Confidence 32 2221 1 11111100 00 112333232 266778889999999999977443 788889999
Q ss_pred EEE-CCCCcEEEEeecCCeEEEEecCCCCcc---ccccCCCCCCCCceeee
Q 003205 222 MAV-SPNGNFVACFTHDGRLVVNNTNFSSPV---IDESCESALPPEQIAWC 268 (839)
Q Consensus 222 ia~-Spng~~iA~~~~~g~i~i~ssd~~~~l---~e~~~~~~~~p~~~~Wc 268 (839)
++- +.+| .|-++++||+++||+....+.. .-++...-.+|.-=.|.
T Consensus 162 vv~R~~~~-qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi 211 (325)
T KOG0649|consen 162 VVGRNANG-QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI 211 (325)
T ss_pred eeecccCc-ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee
Confidence 988 7776 6778899999999997755433 23333334566555554
No 220
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.79 E-value=0.0012 Score=78.63 Aligned_cols=195 Identities=14% Similarity=0.165 Sum_probs=132.2
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCC-CCeEEEeecCCC--e-EEEEEeCC
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPG-GRLIGMSWSEDQ--T-LICVVQDG 108 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~-~~I~~~~fs~de--~-Lv~v~~dG 108 (839)
....+-++|+--.||++. .+..|+||+ -.|+.+..+.-..++ .+|.+|.+-.+. . |++++.||
T Consensus 1066 ~pk~~~~hpf~p~i~~ad------------~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dG 1133 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAAD------------DRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDG 1133 (1387)
T ss_pred CCceeeecCCCceeEEcC------------CcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCc
Confidence 345788999988888875 367899999 588888888765533 579999998643 2 58999999
Q ss_pred eEEEE-eC-CC--Cc--cccCCC---CCccccccCeEEEEEEC--CeEEEEecCCeEEEEecCCCceEEEcCCCCCCCCC
Q 003205 109 TVYRY-NI-HA--EL--IEPNAS---MGKECFEENVVECVFWG--NGVVCVTEANRYFCMADFATMKVCELARPEVEELP 177 (839)
Q Consensus 109 tv~l~-~~-~G--~~--~~~~~g---~~~~~~~~~V~~~~~~~--~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~ 177 (839)
.||+| +. .+ +. .+-+.+ +..-....+ .+.=|. +|..+.|++-+++.+|+.+.. ....+.+. +..
T Consensus 1134 vIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~--~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E--~~~~diP~-~s~ 1208 (1387)
T KOG1517|consen 1134 VIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTG--LVVDWQQQSGHLLVTGDVRSIRIWDAHKE--QVVADIPY-GSS 1208 (1387)
T ss_pred eEEEecccccccCCceeEEeeccccccCccCCCCC--eeeehhhhCCeEEecCCeeEEEEEecccc--eeEeeccc-CCC
Confidence 99999 43 32 22 221111 100001222 123365 999999999999999998632 22334444 334
Q ss_pred ceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc--------cccCCC--ceEEEECCCCc-EEEEeecCCeEEEEecC
Q 003205 178 HCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--------KVDDTL--SQKMAVSPNGN-FVACFTHDGRLVVNNTN 246 (839)
Q Consensus 178 ~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~--------~~~~~~--i~~ia~Spng~-~iA~~~~~g~i~i~ssd 246 (839)
.|-+.+++ ..+.|++++..-.||.|.++|..-.. +.|+.+ |.++++-++|- .|.+++.+|.|.+|+.-
T Consensus 1209 t~vTaLS~-~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1209 TLVTALSA-DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred ccceeecc-cccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecc
Confidence 44444543 33357777777779999999876321 455555 99999999884 49999999999999754
No 221
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.79 E-value=0.0043 Score=70.84 Aligned_cols=156 Identities=14% Similarity=0.165 Sum_probs=95.4
Q ss_pred CceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EE-EEEeC---CeEEEEeCC-CCccccCCCCCccccccCeEEE
Q 003205 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LI-CVVQD---GTVYRYNIH-AELIEPNASMGKECFEENVVEC 138 (839)
Q Consensus 65 ~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv-~v~~d---Gtv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~ 138 (839)
...|.+-+.+|.-...+. .. +.+..-.|||||+ ++ ..+.+ ..|.++|+. |+...... . ...+...
T Consensus 168 ~~~l~~~d~dg~~~~~~~-~~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~-----~g~~~~~ 238 (419)
T PRK04043 168 KSNIVLADYTLTYQKVIV-KG--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-S-----QGMLVVS 238 (419)
T ss_pred cceEEEECCCCCceeEEc-cC--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-C-----CCcEEee
Confidence 456778888888655544 33 5778999999997 44 33333 346666875 44332221 1 2234456
Q ss_pred EEECCeE-EEEecC----CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeC---CeEEEEecCC
Q 003205 139 VFWGNGV-VCVTEA----NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTD---AGILMLDEDG 210 (839)
Q Consensus 139 ~~~~~G~-v~~t~~----~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d---~tv~l~~~~~ 210 (839)
.+++||. ++++.+ .++|.++ ..+...++|.. .+. ....|.|||||+.+++.+.. ..||+++.++
T Consensus 239 ~~SPDG~~la~~~~~~g~~~Iy~~d-l~~g~~~~LT~-----~~~--~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 239 DVSKDGSKLLLTMAPKGQPDIYLYD-TNTKTLTQITN-----YPG--IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred EECCCCCEEEEEEccCCCcEEEEEE-CCCCcEEEccc-----CCC--ccCccEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 7788883 444432 4677665 34444556543 111 13456789999999998862 2789999876
Q ss_pred cc--cccCCCceEEEECCCCcEEEEeecC
Q 003205 211 VQ--KVDDTLSQKMAVSPNGNFVACFTHD 237 (839)
Q Consensus 211 ~~--~~~~~~i~~ia~Spng~~iA~~~~~ 237 (839)
.. ...........+||||+.||..+..
T Consensus 311 g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 311 GSVEQVVFHGKNNSSVSTYKNYIVYSSRE 339 (419)
T ss_pred CCeEeCccCCCcCceECCCCCEEEEEEcC
Confidence 43 2221111235899999999988754
No 222
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.76 E-value=0.0014 Score=75.17 Aligned_cols=171 Identities=15% Similarity=0.117 Sum_probs=100.1
Q ss_pred CceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-E-E--EEEeCCe--EEEEeCCCCccccCCCCCccccccCeEEE
Q 003205 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-L-I--CVVQDGT--VYRYNIHAELIEPNASMGKECFEENVVEC 138 (839)
Q Consensus 65 ~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-L-v--~v~~dGt--v~l~~~~G~~~~~~~g~~~~~~~~~V~~~ 138 (839)
...|.+.+.+|.-...+.-.. +....=.|||||+ + + +...+|. |.+.++.|.-.+..... .......
T Consensus 164 ~~~l~~~d~dG~~~~~lt~~~--~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~-----~g~~~~p 236 (428)
T PRK01029 164 QGELWSVDYDGQNLRPLTQEH--SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL-----QGNQLMP 236 (428)
T ss_pred cceEEEEcCCCCCceEcccCC--CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC-----CCCccce
Confidence 457889999998776666554 6677789999985 3 2 4444555 55557765432111111 2223456
Q ss_pred EEECCeEEE-EecC--C--eEEEE-ecCCC---ceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe-CC--eEEEE
Q 003205 139 VFWGNGVVC-VTEA--N--RYFCM-ADFAT---MKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-DA--GILML 206 (839)
Q Consensus 139 ~~~~~G~v~-~t~~--~--~~~~v-~~~~~---~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~-d~--tv~l~ 206 (839)
+++|||.-+ .+.+ + ++|.. .+... ...+++.. .... . .-.|.|||||+.+++.+. ++ .+|++
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~----~~~~-~-~~~p~wSPDG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLN----EAFG-T-QGNPSFSPDGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeec----CCCC-C-cCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 888999444 4432 2 45543 23321 12233322 1110 0 134678999999998875 44 47777
Q ss_pred ecCC--c-c---cccCCCceEEEECCCCcEEEEeecC---CeEEEEecCCC
Q 003205 207 DEDG--V-Q---KVDDTLSQKMAVSPNGNFVACFTHD---GRLVVNNTNFS 248 (839)
Q Consensus 207 ~~~~--~-~---~~~~~~i~~ia~Spng~~iA~~~~~---g~i~i~ssd~~ 248 (839)
+.++ . . ....+.+...++||||+.||..+.+ ..|++|+.+-+
T Consensus 311 ~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g 361 (428)
T PRK01029 311 QIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG 361 (428)
T ss_pred ECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 6542 1 1 1233456788999999999987654 25888876533
No 223
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=97.76 E-value=0.0007 Score=76.59 Aligned_cols=243 Identities=15% Similarity=0.214 Sum_probs=142.6
Q ss_pred CCceEEEEcCCCCcee-------EEEecCCCCCeEEEeecCCC-eEEEEEeCCeEEEEeCCC-Ccc--ccCCCCCccccc
Q 003205 64 ALRKLRIFNSAGVLIS-------ETVWKNPGGRLIGMSWSEDQ-TLICVVQDGTVYRYNIHA-ELI--EPNASMGKECFE 132 (839)
Q Consensus 64 ~~~~I~iy~~~G~ll~-------ti~~~~~~~~I~~~~fs~de-~Lv~v~~dGtv~l~~~~G-~~~--~~~~g~~~~~~~ 132 (839)
.++.|.+|+..-.... ....|. +.|.++.|-|.+ +||+++.|.|+++|++.+ ++. ...+|| +
T Consensus 72 E~G~i~l~dt~~~~fr~ee~~lk~~~aH~--nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH-----~ 144 (720)
T KOG0321|consen 72 EDGGIILFDTKSIVFRLEERQLKKPLAHK--NAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH-----T 144 (720)
T ss_pred CCCceeeecchhhhcchhhhhhccccccc--ceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc-----c
Confidence 4788888887654333 344565 789999999944 379999999999998753 443 347889 7
Q ss_pred cCeEEEEEEC-CeEEEEecCCeE-EEEecCCCce-------EEEc---------CCCCCCCCCceEEE--------eCCC
Q 003205 133 ENVVECVFWG-NGVVCVTEANRY-FCMADFATMK-------VCEL---------ARPEVEELPHCVAV--------IEPK 186 (839)
Q Consensus 133 ~~V~~~~~~~-~G~v~~t~~~~~-~~v~~~~~~~-------~~~l---------~~~~~~~~~~~w~v--------i~~~ 186 (839)
..|-.+.|.+ |-.|++|+..+. +.+|+..... ...+ +..++....+.|-. +...
T Consensus 145 ~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv 224 (720)
T KOG0321|consen 145 GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVV 224 (720)
T ss_pred cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEE
Confidence 7788889988 777778875542 3444432100 0000 00011111222321 1112
Q ss_pred CCCCCcEEEEEEe-CCeEEEEecCCcc--------c-----cc---CCCceEEEECCCCcEEEEeecCCeEEEEecC-C-
Q 003205 187 YTMTGSVEVLIGT-DAGILMLDEDGVQ--------K-----VD---DTLSQKMAVSPNGNFVACFTHDGRLVVNNTN-F- 247 (839)
Q Consensus 187 ~S~~~~~~v~~s~-d~tv~l~~~~~~~--------~-----~~---~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd-~- 247 (839)
+..|..+++.++. |++|++||+.... . -+ .-.+..+..-..|.++-.-..|++|+.|+-- +
T Consensus 225 ~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s 304 (720)
T KOG0321|consen 225 LFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS 304 (720)
T ss_pred EEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC
Confidence 4558889999888 9999999998543 0 11 1235677777777665444559999999732 1
Q ss_pred CCccccccC--------CCCCCCCceeee--cCceEEEEec------CEEEEEcCCCC--ceEeccC--CCeEEeecCC-
Q 003205 248 SSPVIDESC--------ESALPPEQIAWC--GMDSVLLYWN------DMLVMVAPQAE--PVQYFYD--EPLVLIPECD- 306 (839)
Q Consensus 248 ~~~l~e~~~--------~~~~~p~~~~Wc--G~d~vv~~~~------~~l~lig~~~~--~v~f~~~--~~~~l~~E~D- 306 (839)
.....+|.. .+...|.++.-. ..|.-++.|. ..+.+.|+.-+ +|.|-+. .+++-. .-|
T Consensus 305 ~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~Tc-SdD~ 383 (720)
T KOG0321|consen 305 ISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATC-SDDF 383 (720)
T ss_pred cCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceee-ccCc
Confidence 112223321 112233333221 2455556664 25677777765 6777654 333333 344
Q ss_pred ceEEEccC
Q 003205 307 GVRILSNS 314 (839)
Q Consensus 307 GvRIit~~ 314 (839)
+++||...
T Consensus 384 ~~kiW~l~ 391 (720)
T KOG0321|consen 384 RVKIWRLS 391 (720)
T ss_pred ceEEEecc
Confidence 79999873
No 224
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=97.76 E-value=0.0021 Score=66.62 Aligned_cols=158 Identities=14% Similarity=0.125 Sum_probs=102.2
Q ss_pred ccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCC---CeE-EEEEeCCeEEEEeC-CCCccccCCCCCccccccCeE
Q 003205 62 ESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSED---QTL-ICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVV 136 (839)
Q Consensus 62 ~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~d---e~L-v~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~ 136 (839)
++.|.++++|+.+- +..-..++- .+.|.+=+|||= -.| +++..|-.|++.|+ .|.+..+..|| ..+|.
T Consensus 120 sSFDhtlKVWDtnT-lQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGH-----r~~vl 192 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNT-LQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGH-----RDGVL 192 (397)
T ss_pred ccccceEEEeeccc-ceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccc-----cCceE
Confidence 35799999999653 222233332 289999999993 346 57778888999996 68998889999 78899
Q ss_pred EEEEEC-CeEEEEecCCe-EEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcccc
Q 003205 137 ECVFWG-NGVVCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQKV 214 (839)
Q Consensus 137 ~~~~~~-~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~~~ 214 (839)
.+..+| +-.|++|++-+ -..+|++. + ...|..++.. -++.+.=.. .....
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiR-----r--------asgcf~~lD~--------------hn~k~~p~~-~~n~a 244 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIR-----R--------ASGCFRVLDQ--------------HNTKRPPIL-KTNTA 244 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEee-----c--------ccceeEEeec--------------ccCccCccc-ccccc
Confidence 888877 77777776532 12333321 1 0112222211 011000000 01145
Q ss_pred cCCCceEEEECCCCcEEEEeecCCeEEEEecCCCC-ccccc
Q 003205 215 DDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSS-PVIDE 254 (839)
Q Consensus 215 ~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~-~l~e~ 254 (839)
+.+.|..++++.+|.++++.+.|..+.+|++.-++ .+.+|
T Consensus 245 h~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~ 285 (397)
T KOG4283|consen 245 HYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREF 285 (397)
T ss_pred ccceeeeeeecccchhhhhccCccceEEeecccCccccccc
Confidence 67889999999999999999999999999875433 44444
No 225
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=97.74 E-value=0.0002 Score=79.96 Aligned_cols=117 Identities=14% Similarity=0.156 Sum_probs=79.5
Q ss_pred CCeEEEeecCC-CeEEEEEeCCeEEEEeCC-------CCc--cccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEE
Q 003205 88 GRLIGMSWSED-QTLICVVQDGTVYRYNIH-------AEL--IEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFC 156 (839)
Q Consensus 88 ~~I~~~~fs~d-e~Lv~v~~dGtv~l~~~~-------G~~--~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~ 156 (839)
+-|..+.|-|- ..|++++.||++++|+++ +.+ +-++.+| +..|+++.+..+|..+.+++-+ .+.
T Consensus 295 d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH-----~gPVl~v~v~~n~~~~ysgg~Dg~I~ 369 (577)
T KOG0642|consen 295 DCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAH-----EGPVLCVVVPSNGEHCYSGGIDGTIR 369 (577)
T ss_pred hhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecc-----cCceEEEEecCCceEEEeeccCceee
Confidence 55777777774 469999999999999982 122 3456777 7789988888999999998543 233
Q ss_pred EecCC-------CceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc
Q 003205 157 MADFA-------TMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ 212 (839)
Q Consensus 157 v~~~~-------~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~ 212 (839)
.||+- +.++..+..+-.|.+...|-+ .+|+..+.++..+.|||+++|...+..
T Consensus 370 ~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l---~~s~~~~~Llscs~DgTvr~w~~~~~~ 429 (577)
T KOG0642|consen 370 CWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLL---ALSSTKDRLLSCSSDGTVRLWEPTEES 429 (577)
T ss_pred eeccCCCCCcccccCcchhccceeccccceeee---eecccccceeeecCCceEEeeccCCcC
Confidence 44332 111222332223345566766 566677888888889999999877644
No 226
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.52 E-value=0.00018 Score=52.28 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=35.0
Q ss_pred CCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEe
Q 003205 75 GVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYN 114 (839)
Q Consensus 75 G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~ 114 (839)
|+++.++..|. +.|.+|.|+|++. +++++.||+|++||
T Consensus 1 g~~~~~~~~h~--~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHS--SSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSS--SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCC--CcEEEEEEecccccceeeCCCCEEEEEC
Confidence 67899999999 9999999999976 68999999999996
No 227
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.52 E-value=0.024 Score=70.79 Aligned_cols=171 Identities=12% Similarity=0.180 Sum_probs=98.7
Q ss_pred CceEEEE----cCCCCceeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeEEEEeCC-----------------------
Q 003205 65 LRKLRIF----NSAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNIH----------------------- 116 (839)
Q Consensus 65 ~~~I~iy----~~~G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv~l~~~~----------------------- 116 (839)
.|.|-++ +.....+..+ +.- .+.|.+++||||+++ ++++.+|++.+-+-+
T Consensus 96 ~Gdi~~~~~~~~~~~~~~E~V-G~v-d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVG 173 (928)
T PF04762_consen 96 SGDIILVREDPDPDEDEIEIV-GSV-DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVG 173 (928)
T ss_pred CceEEEEEccCCCCCceeEEE-EEE-cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeec
Confidence 4555555 4333333333 332 278999999999986 789999998876432
Q ss_pred -CCccccCCCCCccc-----cc-------cCe-----EEEEE-E-CCeEEEEec-----CC--eEEEEecCCCceEEEcC
Q 003205 117 -AELIEPNASMGKEC-----FE-------ENV-----VECVF-W-GNGVVCVTE-----AN--RYFCMADFATMKVCELA 169 (839)
Q Consensus 117 -G~~~~~~~g~~~~~-----~~-------~~V-----~~~~~-~-~~G~v~~t~-----~~--~~~~v~~~~~~~~~~l~ 169 (839)
|+-.+.+.|.+.+. .+ .+. ..++| | +||..++.+ .+ +...|++-++ .+....
T Consensus 174 WGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG-~L~stS 252 (928)
T PF04762_consen 174 WGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG-ELQSTS 252 (928)
T ss_pred cCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc-eEEecc
Confidence 22211122221110 00 111 12333 4 377555543 22 5566666542 233323
Q ss_pred CCCCC-CCCceEEEeCCCCCCCCcEEEEEEe---CCeEEEEecCCcc------c--ccCCCceEEEECCCCcEEEEeecC
Q 003205 170 RPEVE-ELPHCVAVIEPKYTMTGSVEVLIGT---DAGILMLDEDGVQ------K--VDDTLSQKMAVSPNGNFVACFTHD 237 (839)
Q Consensus 170 ~~~~~-~~~~~w~vi~~~~S~~~~~~v~~s~---d~tv~l~~~~~~~------~--~~~~~i~~ia~Spng~~iA~~~~~ 237 (839)
++..+ ..+-+| -|+|+.++..-. ...|..|-.+|.. + .....+..|+.|+|+..+|....+
T Consensus 253 E~v~gLe~~l~W-------rPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~ 325 (928)
T PF04762_consen 253 EPVDGLEGALSW-------RPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED 325 (928)
T ss_pred ccCCCccCCccC-------CCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC
Confidence 31111 233345 459998887775 4567778888765 1 345679999999999999998865
Q ss_pred CeEEEEecC
Q 003205 238 GRLVVNNTN 246 (839)
Q Consensus 238 g~i~i~ssd 246 (839)
. |.+|+..
T Consensus 326 ~-vqLWt~~ 333 (928)
T PF04762_consen 326 R-VQLWTRS 333 (928)
T ss_pred C-ceEEEee
Confidence 4 8899754
No 228
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.50 E-value=0.0067 Score=64.97 Aligned_cols=175 Identities=13% Similarity=0.088 Sum_probs=101.1
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeE------EEecCCCCCeEEEeecCCCe-EEEEEeCC
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISE------TVWKNPGGRLIGMSWSEDQT-LICVVQDG 108 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~t------i~~~~~~~~I~~~~fs~de~-Lv~v~~dG 108 (839)
..+-||.+|..+|..+| |..+++|+-.--.... +..|...++|.++.|..... +.++..+|
T Consensus 60 NAlqFS~N~~~L~SGGD------------D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 60 NALQFSHNDRFLASGGD------------DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred ceeeeccCCeEEeecCC------------cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 46779999999999875 6778999876433332 22333127899999997665 67999999
Q ss_pred eEEEEeCCCCccccCCCCCccccccCeEEEEEEC--CeEEEEecCCeEEEEecCCCceEE-EcCCCCCCCCCceEEEeCC
Q 003205 109 TVYRYNIHAELIEPNASMGKECFEENVVECVFWG--NGVVCVTEANRYFCMADFATMKVC-ELARPEVEELPHCVAVIEP 185 (839)
Q Consensus 109 tv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~--~G~v~~t~~~~~~~v~~~~~~~~~-~l~~~~~~~~~~~w~vi~~ 185 (839)
+|.+-++..+..-+...|+.. ...|.....+| +-+++.|.++.+..+.+.+.|.+. ++...+ .+..-.++
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~--~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN--~~~~F~t~--- 200 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNN--RGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN--SGKNFYTA--- 200 (609)
T ss_pred eeEeeecccceeeeeecccCc--ccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC--CCccceee---
Confidence 999888765543333334221 34577766766 455555556666555555544322 111111 11111222
Q ss_pred CCCCCC-cEEEEEEeCCeEEEEecCCcc------------cccCCCceEEEECCCCc
Q 003205 186 KYTMTG-SVEVLIGTDAGILMLDEDGVQ------------KVDDTLSQKMAVSPNGN 229 (839)
Q Consensus 186 ~~S~~~-~~~v~~s~d~tv~l~~~~~~~------------~~~~~~i~~ia~Spng~ 229 (839)
.|.|-. .+++..+.-+++-+||..-.+ ......|..+-+||+|.
T Consensus 201 ~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~ 257 (609)
T KOG4227|consen 201 EFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGN 257 (609)
T ss_pred eecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCC
Confidence 122232 334444445566777766332 11234567778888874
No 229
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=97.50 E-value=0.00032 Score=81.31 Aligned_cols=171 Identities=16% Similarity=0.177 Sum_probs=99.2
Q ss_pred cCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCCCCccccCCCC-CccccccCeEEEEE
Q 003205 63 SALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASM-GKECFEENVVECVF 140 (839)
Q Consensus 63 ~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~~~~~~g~-~~~~~~~~V~~~~~ 140 (839)
+.|..|++|- .+|.+++-+.+|. |.|.+++|+|-- +-+.|||+++|+..-+...|.... ... -...|....|
T Consensus 251 S~D~vIrvWrl~~~~pvsvLrght--gavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~-~~~~~~s~~~ 324 (1113)
T KOG0644|consen 251 SNDKVIRVWRLPDGAPVSVLRGHT--GAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFT-EKDLVDSILF 324 (1113)
T ss_pred ccCceEEEEecCCCchHHHHhccc--cceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcc-cccceeeeec
Confidence 4799999999 6999999999999 999999999965 778899999998763333322111 000 0111222222
Q ss_pred EC--------------------------CeEEEEecCCe------------EEEEecCCCceEEEcCCCCCC-CCCceEE
Q 003205 141 WG--------------------------NGVVCVTEANR------------YFCMADFATMKVCELARPEVE-ELPHCVA 181 (839)
Q Consensus 141 ~~--------------------------~G~v~~t~~~~------------~~~v~~~~~~~~~~l~~~~~~-~~~~~w~ 181 (839)
-. +++.++|.+.+ ...+||....... ..+. .......
T Consensus 325 ~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~----H~l~ghsd~~yv 400 (1113)
T KOG0644|consen 325 ENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL----HNLMGHSDEVYV 400 (1113)
T ss_pred cccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhh----hhhcccccceee
Confidence 22 33333333311 0112221111000 0000 0111111
Q ss_pred E-eCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 182 V-IEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 182 v-i~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
. +.| | +-.+-..++.||...+||..... ....+....-+||++|+.+|+--.-|.++|....
T Consensus 401 Ld~Hp-f--n~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 401 LDVHP-F--NPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred eeecC-C--CcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccC
Confidence 1 111 1 22334456779999999987443 2335566788999999999998777889888643
No 230
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.50 E-value=0.0051 Score=65.55 Aligned_cols=188 Identities=14% Similarity=0.125 Sum_probs=118.0
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYR 112 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l 112 (839)
........++|+..+.++ -.+..|.||+.+-..-.-++|.. .|.+.-+-||||++ |.+++-|++.++
T Consensus 197 pVtsmqwn~dgt~l~tAS-----------~gsssi~iWdpdtg~~~pL~~~g-lgg~slLkwSPdgd~lfaAt~davfrl 264 (445)
T KOG2139|consen 197 PVTSMQWNEDGTILVTAS-----------FGSSSIMIWDPDTGQKIPLIPKG-LGGFSLLKWSPDGDVLFAATCDAVFRL 264 (445)
T ss_pred eeeEEEEcCCCCEEeecc-----------cCcceEEEEcCCCCCcccccccC-CCceeeEEEcCCCCEEEEecccceeee
Confidence 344677888888888876 25789999998766555566776 47888999999998 689999999999
Q ss_pred EeCCCCc--cccCCCCCccccccCeEEEEEECCeEEEEe-c--CCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCC
Q 003205 113 YNIHAEL--IEPNASMGKECFEENVVECVFWGNGVVCVT-E--ANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKY 187 (839)
Q Consensus 113 ~~~~G~~--~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t-~--~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~ 187 (839)
|+.+... ..-.+|. ..|.++..+|.|-.++- . +-.+|.+.--..+ . .+ . .....|.+..+
T Consensus 265 w~e~q~wt~erw~lgs------grvqtacWspcGsfLLf~~sgsp~lysl~f~~~~-~-~~----~-~~~~~k~~lli-- 329 (445)
T KOG2139|consen 265 WQENQSWTKERWILGS------GRVQTACWSPCGSFLLFACSGSPRLYSLTFDGED-S-VF----L-RPQSIKRVLLI-- 329 (445)
T ss_pred ehhcccceecceeccC------CceeeeeecCCCCEEEEEEcCCceEEEEeecCCC-c-cc----c-Ccccceeeeee--
Confidence 9654333 2334443 46777666677755433 2 3356655421111 0 00 0 12233544221
Q ss_pred CCCCcEEEEEEeCCeEEEEecCCc-----ccccCCCceEEEECCCCcEEEEeecCCe-EEEEecCCCCccccccCCCCCC
Q 003205 188 TMTGSVEVLIGTDAGILMLDEDGV-----QKVDDTLSQKMAVSPNGNFVACFTHDGR-LVVNNTNFSSPVIDESCESALP 261 (839)
Q Consensus 188 S~~~~~~v~~s~d~tv~l~~~~~~-----~~~~~~~i~~ia~Spng~~iA~~~~~g~-i~i~ssd~~~~l~e~~~~~~~~ 261 (839)
.|...+ +..--++...|+..|.|.++|..-.-+. +. ++.-.+..|++. .++
T Consensus 330 ------------------aDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~----~~k~~i~~fdtr-~sp 386 (445)
T KOG2139|consen 330 ------------------ADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVL----LCKLHISRFDTR-KSP 386 (445)
T ss_pred ------------------ccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhh----hhhhhhhhhccc-ccC
Confidence 111111 1233477899999999999998653322 22 245556677777 567
Q ss_pred CCceeeecCc
Q 003205 262 PEQIAWCGMD 271 (839)
Q Consensus 262 p~~~~WcG~d 271 (839)
|..+.-||-+
T Consensus 387 ~vels~cg~i 396 (445)
T KOG2139|consen 387 PVELSYCGMI 396 (445)
T ss_pred ceEEEecccc
Confidence 8888888853
No 231
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.49 E-value=0.0012 Score=70.86 Aligned_cols=135 Identities=17% Similarity=0.258 Sum_probs=92.0
Q ss_pred ccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEE
Q 003205 62 ESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVEC 138 (839)
Q Consensus 62 ~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~ 138 (839)
.+.|++|.||| ..|.-+-++. |. +-|.+|.|+.||. |++...|..||+||. .|+...--.+|+ -.+-.-+
T Consensus 150 ag~Dn~v~iWnv~tgeali~l~-hp--d~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he----G~k~~Ra 222 (472)
T KOG0303|consen 150 AGSDNTVSIWNVGTGEALITLD-HP--DMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE----GAKPARA 222 (472)
T ss_pred ccCCceEEEEeccCCceeeecC-CC--CeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc----CCCccee
Confidence 35799999999 5888888887 77 9999999999997 579999999999985 677755446663 2222345
Q ss_pred EEECCeEEEEec----CCeEEEEec---CCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe-CCeEEEEecCC
Q 003205 139 VFWGNGVVCVTE----ANRYFCMAD---FATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDEDG 210 (839)
Q Consensus 139 ~~~~~G~v~~t~----~~~~~~v~~---~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~-d~tv~l~~~~~ 210 (839)
.|-.+|.++.|+ +.+.+-+|+ +++|- -+.+ + ..+-.|+=|.|.+|.+++-+++. |+.|.-+..+.
T Consensus 223 ifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~--~~~e--l---DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 223 IFLASGKIFTTGFSRMSERQIALWDPNNLEEPI--ALQE--L---DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred EEeccCceeeeccccccccceeccCcccccCcc--eeEE--e---ccCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 666789855554 335555654 33331 1111 1 12223666788889898888887 77776665443
No 232
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.48 E-value=0.0043 Score=67.83 Aligned_cols=226 Identities=18% Similarity=0.226 Sum_probs=147.4
Q ss_pred hhhccCCCCh-hhhHHHHHHHHhccChhhHHHHHHhhhhHHHHHHHHHHHccccCCHHHHHHHHHHhc--hhcccccccC
Q 003205 328 QIFAIGSTSP-AALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAAS--YGQAFCSNFQ 404 (839)
Q Consensus 328 ~vf~igS~~p-ga~L~~A~~~~~~~~~~a~e~lr~i~~~L~~AV~~CI~AA~~e~d~~~Qk~LL~AAs--fGk~f~~~~~ 404 (839)
..|++-...| +.-|+..+-. .+++..-..+-.-.++..++-.-.+.-|..+-++..-...|+.|+ |+++-...|.
T Consensus 73 ~f~~il~~~p~a~~l~~~~~r--~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~~~~~~~~~~~L~~a~~~y~~~k~~~f~ 150 (319)
T PF04840_consen 73 QFFKILNQNPVASNLYKKYCR--EQDRELLKDFYYQEDRFQELANLHLQEALSQKDVEEKISFLKQAQKLYSKSKNDAFE 150 (319)
T ss_pred HHHHHHHhCcchHHHHHHHHH--hccHHHHHHHHHhcchHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcchhHHH
Confidence 4455433344 3445544432 133333222222234555555566666655556655555555553 3333222333
Q ss_pred hhHHHHHhhhhhhhhccCCCCCcccccHHHHHhCChHHHHHHHHHcCChHHHHHHHHHhCCChhhHHHHhHhhhhhhcCC
Q 003205 405 RDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACSKITASLA 484 (839)
Q Consensus 405 ~~~fv~~c~~LRvLn~lr~~~igi~lT~~Q~~~l~~~~li~rL~~r~~~~lA~~I~~~l~~~~~~I~~~WA~~kI~~~~~ 484 (839)
....-+-.+.|+.-..|.. ..+ ..|..++....|.+|+.+|++..|-+|.+-+++|..+-. |..-+. ....
T Consensus 151 ~~~~e~q~~Ll~~Q~~Le~-~~~-----~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw--~lki~a-La~~ 221 (319)
T PF04840_consen 151 AKLIEEQIKLLEYQKELEE-KYN-----TNFVGLSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFW--WLKIKA-LAEN 221 (319)
T ss_pred HHHHHHHHHHHHHHHHHHH-Hhc-----cchhcCCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHH--HHHHHH-HHhc
Confidence 3333334445555555543 222 236677888899999999999999999999999866654 554443 2222
Q ss_pred CChHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHHHHhcCCCCCCchhhhhccCchHHHHHHHHHcCCchHHHHH
Q 003205 485 IPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLV 564 (839)
Q Consensus 485 ~~D~~l~~~I~~kl~~~~~is~~~IA~~A~~~gR~~LA~~Ll~~E~~~~~qV~lLl~~~~~~~AL~~Ai~S~D~dLI~~v 564 (839)
-+=++|.+.-.+| .+.|.|.-++.+..+.|++..|.+.+..=+. .++|.++++.|++..|.+.|.+.+|+++...+
T Consensus 222 ~~w~eL~~fa~sk---KsPIGyepFv~~~~~~~~~~eA~~yI~k~~~-~~rv~~y~~~~~~~~A~~~A~~~kd~~~L~~i 297 (319)
T PF04840_consen 222 KDWDELEKFAKSK---KSPIGYEPFVEACLKYGNKKEASKYIPKIPD-EERVEMYLKCGDYKEAAQEAFKEKDIDLLKQI 297 (319)
T ss_pred CCHHHHHHHHhCC---CCCCChHHHHHHHHHCCCHHHHHHHHHhCCh-HHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHH
Confidence 2346666654432 3569999999999999999999999999776 99999999999999999999999999988776
Q ss_pred HHHH
Q 003205 565 IFHI 568 (839)
Q Consensus 565 ll~l 568 (839)
.-+.
T Consensus 298 ~~~~ 301 (319)
T PF04840_consen 298 LKRC 301 (319)
T ss_pred HHHC
Confidence 5443
No 233
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=97.46 E-value=0.0028 Score=65.73 Aligned_cols=243 Identities=18% Similarity=0.275 Sum_probs=130.8
Q ss_pred CceEEEEc---CCCCceeEEEecCCCCCeEEEeecCCCe-E---EEEEeCCeEEEEeCC---CCc-cccCCCCCccc-cc
Q 003205 65 LRKLRIFN---SAGVLISETVWKNPGGRLIGMSWSEDQT-L---ICVVQDGTVYRYNIH---AEL-IEPNASMGKEC-FE 132 (839)
Q Consensus 65 ~~~I~iy~---~~G~ll~ti~~~~~~~~I~~~~fs~de~-L---v~v~~dGtv~l~~~~---G~~-~~~~~g~~~~~-~~ 132 (839)
.+.|+|-. -+|+++..-..+. +-++..+.|.|+.. . +.++.+-..|+|... ++. .+-.+...... ..
T Consensus 72 ~Nkvqiv~ld~~s~e~~~~a~fd~-~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~ 150 (364)
T KOG0290|consen 72 NNKVQIVQLDEDSGELVEDANFDH-PYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFC 150 (364)
T ss_pred CCeeEEEEEccCCCceeccCCCCC-CCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccC
Confidence 34454443 4566665544443 26789999999873 1 455666679999653 222 11111110000 00
Q ss_pred cCeEEEEE-EC--CeEEEEecCCe-EEEEecCCCc-----eEEEcCCCCCCCCCceEEEeCCCCCCC-CcEEEEEEeCCe
Q 003205 133 ENVVECVF-WG--NGVVCVTEANR-YFCMADFATM-----KVCELARPEVEELPHCVAVIEPKYTMT-GSVEVLIGTDAG 202 (839)
Q Consensus 133 ~~V~~~~~-~~--~G~v~~t~~~~-~~~v~~~~~~-----~~~~l~~~~~~~~~~~w~vi~~~~S~~-~~~~v~~s~d~t 202 (839)
..+. .| |. +--.+.|++-+ .-.||+++.. +.+.++ +... |....|+.. .++.+.++.||.
T Consensus 151 aPlT--SFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA-----HDKE---V~DIaf~~~s~~~FASvgaDGS 220 (364)
T KOG0290|consen 151 APLT--SFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA-----HDKE---VYDIAFLKGSRDVFASVGADGS 220 (364)
T ss_pred Cccc--ccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe-----cCcc---eeEEEeccCccceEEEecCCCc
Confidence 0111 11 22 22333343332 1223444321 222222 2222 222245442 245566677999
Q ss_pred EEEEecCCcc--------cccCCCceEEEECCCC-cEEEEeecCCe-EEEEecC-CCCccccccCCCCCCCCceee----
Q 003205 203 ILMLDEDGVQ--------KVDDTLSQKMAVSPNG-NFVACFTHDGR-LVVNNTN-FSSPVIDESCESALPPEQIAW---- 267 (839)
Q Consensus 203 v~l~~~~~~~--------~~~~~~i~~ia~Spng-~~iA~~~~~g~-i~i~ssd-~~~~l~e~~~~~~~~p~~~~W---- 267 (839)
|.++|+.... .....|..+++.+++- +++|++..|.. +.|.+.- -...+++...| ......++|
T Consensus 221 vRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H-~a~VNgIaWaPhS 299 (364)
T KOG0290|consen 221 VRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNH-QASVNGIAWAPHS 299 (364)
T ss_pred EEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcC-cccccceEecCCC
Confidence 9999988653 1225667777776643 58999988765 7777643 34566677666 556778888
Q ss_pred ------ecCceEEEEecCEEEEEcCCCC--ceEeccCC---CeEEe-ecCCceEEEccCcceeee
Q 003205 268 ------CGMDSVLLYWNDMLVMVAPQAE--PVQYFYDE---PLVLI-PECDGVRILSNSSMEFLQ 320 (839)
Q Consensus 268 ------cG~d~vv~~~~~~l~lig~~~~--~v~f~~~~---~~~l~-~E~DGvRIit~~~~~~l~ 320 (839)
||+|+.++.|+-.- +.++.+. -..|.-.+ .+.-. +-.|++-|...+++|.|+
T Consensus 300 ~~hictaGDD~qaliWDl~q-~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kkleiLR 363 (364)
T KOG0290|consen 300 SSHICTAGDDCQALIWDLQQ-MPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLEILR 363 (364)
T ss_pred CceeeecCCcceEEEEeccc-ccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCeeeEEe
Confidence 59999999997421 1111221 22222111 12223 557889999999999885
No 234
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.46 E-value=0.015 Score=64.67 Aligned_cols=191 Identities=15% Similarity=0.158 Sum_probs=107.4
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC--CCceeEEE-e----------cCCCCCeEEEeecCCCeEE
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA--GVLISETV-W----------KNPGGRLIGMSWSEDQTLI 102 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~--G~ll~ti~-~----------~~~~~~I~~~~fs~de~Lv 102 (839)
+.++++|+|..+.++.- ..++|.+|+.+ |.+-.... + .+......++.|+||++.+
T Consensus 90 ~~i~~~~~g~~l~vany-----------~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v 158 (345)
T PF10282_consen 90 CHIAVDPDGRFLYVANY-----------GGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFV 158 (345)
T ss_dssp EEEEECTTSSEEEEEET-----------TTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEE
T ss_pred EEEEEecCCCEEEEEEc-----------cCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEE
Confidence 57888888888888751 47889998853 66555422 1 1212578999999999865
Q ss_pred EEEeC--CeEEEEeCCC---Cccc---cCCCCCccccccCeEEEEEECCeEEE-Eec--CCeEE--EEecCCCceE---E
Q 003205 103 CVVQD--GTVYRYNIHA---ELIE---PNASMGKECFEENVVECVFWGNGVVC-VTE--ANRYF--CMADFATMKV---C 166 (839)
Q Consensus 103 ~v~~d--Gtv~l~~~~G---~~~~---~~~g~~~~~~~~~V~~~~~~~~G~v~-~t~--~~~~~--~v~~~~~~~~---~ 166 (839)
.+.+- ..|++|++.. ++.. ...+. ..+-..+.|+++|..+ ++. ++.+. .+..- .... .
T Consensus 159 ~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~-----G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~-~g~~~~~~ 232 (345)
T PF10282_consen 159 YVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP-----GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS-DGSLTEIQ 232 (345)
T ss_dssp EEEETTTTEEEEEEE-TTS-TEEEEEEEECST-----TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT-TTEEEEEE
T ss_pred EEEecCCCEEEEEEEeCCCceEEEeecccccc-----CCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc-CCceeEEE
Confidence 55543 3588887642 2311 12222 4456788999987544 332 34443 33311 1122 1
Q ss_pred EcCCCCCC--CCCceEEEeCCCCCCCCcEEEEEEe-CCeEEEEecCCc---c------cccCCCceEEEECCCCcEEEEe
Q 003205 167 ELARPEVE--ELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDEDGV---Q------KVDDTLSQKMAVSPNGNFVACF 234 (839)
Q Consensus 167 ~l~~~~~~--~~~~~w~vi~~~~S~~~~~~v~~s~-d~tv~l~~~~~~---~------~~~~~~i~~ia~Spng~~iA~~ 234 (839)
.++..+.+ .......+ .+||||+.+..... .++|.+++.++. . ......-..|++||+|++|+..
T Consensus 233 ~~~~~~~~~~~~~~~~~i---~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va 309 (345)
T PF10282_consen 233 TISTLPEGFTGENAPAEI---AISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVA 309 (345)
T ss_dssp EEESCETTSCSSSSEEEE---EE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEE
T ss_pred EeeeccccccccCCceeE---EEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEE
Confidence 22221111 11122333 24559987665554 667888877432 2 1222224799999999999988
Q ss_pred ec-CCeEEEEecC
Q 003205 235 TH-DGRLVVNNTN 246 (839)
Q Consensus 235 ~~-~g~i~i~ssd 246 (839)
+. +++|.++..|
T Consensus 310 ~~~s~~v~vf~~d 322 (345)
T PF10282_consen 310 NQDSNTVSVFDID 322 (345)
T ss_dssp ETTTTEEEEEEEE
T ss_pred ecCCCeEEEEEEe
Confidence 85 5578888765
No 235
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.43 E-value=0.0019 Score=71.78 Aligned_cols=184 Identities=13% Similarity=0.128 Sum_probs=117.3
Q ss_pred CCeEEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCceEEEcCCCCCCCC
Q 003205 98 DQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMKVCELARPEVEEL 176 (839)
Q Consensus 98 de~Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~ 176 (839)
++.+++.++||.+.+.+-.|+.....-.| ...|...+.+++|..++|...+ ++.+|.-.++.--.+.. ..
T Consensus 75 ~d~~~i~s~DGkf~il~k~~rVE~sv~AH-----~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q----~~ 145 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSARVERSISAH-----AAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQ----NE 145 (737)
T ss_pred cceEEEEcCCceEEEecccchhhhhhhhh-----hhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhh----cC
Confidence 45688999999999999888875544455 5567888888899999997654 67788765543222322 12
Q ss_pred CceEEEeCCCCCCCCcEEEEEEeCCeEEEEecC--Ccc---cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcc
Q 003205 177 PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED--GVQ---KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPV 251 (839)
Q Consensus 177 ~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~--~~~---~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l 251 (839)
....|+ .+-|+.+.+++...++ +++-... ... +.|.|-|..+..||....||++++|-..+||++ +++.|
T Consensus 146 ~~v~c~---~W~p~S~~vl~c~g~h-~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~L 220 (737)
T KOG1524|consen 146 ESIRCA---RWAPNSNSIVFCQGGH-ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANL 220 (737)
T ss_pred ceeEEE---EECCCCCceEEecCCe-EEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCccc
Confidence 222233 2223555555544433 3333322 221 678899999999999999999999999999975 57777
Q ss_pred ccccCC-CCCCCCceeeecCceEEEEec-CEEEEEcCCCC---ceEeccCCC
Q 003205 252 IDESCE-SALPPEQIAWCGMDSVLLYWN-DMLVMVAPQAE---PVQYFYDEP 298 (839)
Q Consensus 252 ~e~~~~-~~~~p~~~~WcG~d~vv~~~~-~~l~lig~~~~---~v~f~~~~~ 298 (839)
|+.. .+.+..+++|.-+ ...+.|. +.+.|-.|..- .++|+.||.
T Consensus 221 --f~S~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p~~GSifnlsWS~DGT 269 (737)
T KOG1524|consen 221 --FTSAAEEYAITSVAFNPE-KDYLLWSYNTARFSSPRVGSIFNLSWSADGT 269 (737)
T ss_pred --ccCChhccceeeeeeccc-cceeeeeeeeeeecCCCccceEEEEEcCCCc
Confidence 4432 2456678888765 4444443 24455544432 344444443
No 236
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.42 E-value=0.0055 Score=64.90 Aligned_cols=193 Identities=12% Similarity=0.201 Sum_probs=105.9
Q ss_pred CCeEEEeecCCCe---EEEEEeCCeEEEEeCCCCcccc---CCCCC--------------------cccc---------c
Q 003205 88 GRLIGMSWSEDQT---LICVVQDGTVYRYNIHAELIEP---NASMG--------------------KECF---------E 132 (839)
Q Consensus 88 ~~I~~~~fs~de~---Lv~v~~dGtv~l~~~~G~~~~~---~~g~~--------------------~~~~---------~ 132 (839)
.+|..+.|-+++. .++.+.|.|+++|-...+-.+. .++.. ++.. .
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 4688889998875 4688999999999653222111 11000 0000 1
Q ss_pred cCeEEEEEECCeEEEEecCCeEEEEecCCCc----eEEEcCCCCCCCCCceEEEe-CCCCCCCC-cEEEEEEeCCeEEEE
Q 003205 133 ENVVECVFWGNGVVCVTEANRYFCMADFATM----KVCELARPEVEELPHCVAVI-EPKYTMTG-SVEVLIGTDAGILML 206 (839)
Q Consensus 133 ~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~----~~~~l~~~~~~~~~~~w~vi-~~~~S~~~-~~~v~~s~d~tv~l~ 206 (839)
--|.++.+..++..+++++.--+-+|+++-. ...-+...+. .....|| ...|+|.. ++.++-+..|+|.+.
T Consensus 165 yhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nm---EeLteVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 165 YHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANM---EELTEVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred eEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCH---HHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 1123455556677777665533344444311 1111111000 0001122 22366665 466777789999999
Q ss_pred ecCCc-----c------c----------ccCCCceEEEECCCCcEEEEeecC-CeEEEEecCCCC-ccccccCCCC----
Q 003205 207 DEDGV-----Q------K----------VDDTLSQKMAVSPNGNFVACFTHD-GRLVVNNTNFSS-PVIDESCESA---- 259 (839)
Q Consensus 207 ~~~~~-----~------~----------~~~~~i~~ia~Spng~~iA~~~~~-g~i~i~ssd~~~-~l~e~~~~~~---- 259 (839)
|.... . + .-...|+.+.||++|++|.+ .| .++++|+.+... .+..+..+..
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryils--RDyltvk~wD~nme~~pv~t~~vh~~lr~k 319 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILS--RDYLTVKLWDLNMEAKPVETYPVHEYLRSK 319 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEE--eccceeEEEeccccCCcceEEeehHhHHHH
Confidence 98722 1 1 12345889999999999987 44 589999875433 2222222211
Q ss_pred ----------CCCCceeeecCceEEE--EecCEEEEEc
Q 003205 260 ----------LPPEQIAWCGMDSVLL--YWNDMLVMVA 285 (839)
Q Consensus 260 ----------~~p~~~~WcG~d~vv~--~~~~~l~lig 285 (839)
..-....|.|+|..++ .|++...+++
T Consensus 320 Lc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 320 LCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred HHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence 1123678888888877 4666666665
No 237
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=97.38 E-value=0.007 Score=62.81 Aligned_cols=171 Identities=12% Similarity=0.200 Sum_probs=107.1
Q ss_pred cccCCceEEEEcC----CCCceeEEEecCCCCCeEEEeecCCCe--EEEEEeCCeEEEEeCCCCccccCCCCCccccccC
Q 003205 61 AESALRKLRIFNS----AGVLISETVWKNPGGRLIGMSWSEDQT--LICVVQDGTVYRYNIHAELIEPNASMGKECFEEN 134 (839)
Q Consensus 61 ~~~~~~~I~iy~~----~G~ll~ti~~~~~~~~I~~~~fs~de~--Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~ 134 (839)
.++.|.|-.||+. +|..-.++-.|. ..|.+++|...+. +++|+.||.||+||+. ++.|. .
T Consensus 168 tSSiDTTCTiWdie~~~~~~vkTQLIAHD--KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR------~leHS------T 233 (364)
T KOG0290|consen 168 TSSIDTTCTIWDIETGVSGTVKTQLIAHD--KEVYDIAFLKGSRDVFASVGADGSVRMFDLR------SLEHS------T 233 (364)
T ss_pred eecccCeEEEEEEeeccccceeeEEEecC--cceeEEEeccCccceEEEecCCCcEEEEEec------ccccc------e
Confidence 3457899999994 445566677788 8999999999654 6899999999999975 23331 1
Q ss_pred eEEEEEECCeEEEEecCCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe-CCeEEEEecCCc-c
Q 003205 135 VVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDEDGV-Q 212 (839)
Q Consensus 135 V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~-d~tv~l~~~~~~-~ 212 (839)
| ++.++.- ..|. .+| +|+-- |-+..++++. .+.|.++|..-- .
T Consensus 234 I----IYE~p~~--------------~~pL-lRL----------swnkq------DpnymATf~~dS~~V~iLDiR~P~t 278 (364)
T KOG0290|consen 234 I----IYEDPSP--------------STPL-LRL----------SWNKQ------DPNYMATFAMDSNKVVILDIRVPCT 278 (364)
T ss_pred E----EecCCCC--------------CCcc-eee----------ccCcC------CchHHhhhhcCCceEEEEEecCCCc
Confidence 1 1111100 1121 122 12111 2233333333 334555555421 1
Q ss_pred -----cccCCCceEEEECCCC-cEEEEeecCCeEEEEecC--CC----CccccccCCCCCCCCceeee--cCceEEEEec
Q 003205 213 -----KVDDTLSQKMAVSPNG-NFVACFTHDGRLVVNNTN--FS----SPVIDESCESALPPEQIAWC--GMDSVLLYWN 278 (839)
Q Consensus 213 -----~~~~~~i~~ia~Spng-~~iA~~~~~g~i~i~ssd--~~----~~l~e~~~~~~~~p~~~~Wc--G~d~vv~~~~ 278 (839)
..|.+.|+.|+.-|.. .+||+.++|-...||+.+ +. +.+.-|. ......|+.|. -.|-+++.++
T Consensus 279 pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 279 PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEec
Confidence 6799999999999975 689999999998899743 22 2223333 23467899997 4677888777
Q ss_pred CEEE
Q 003205 279 DMLV 282 (839)
Q Consensus 279 ~~l~ 282 (839)
+.+-
T Consensus 357 kkle 360 (364)
T KOG0290|consen 357 KKLE 360 (364)
T ss_pred Ceee
Confidence 7543
No 238
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.37 E-value=0.00052 Score=71.95 Aligned_cols=158 Identities=15% Similarity=0.152 Sum_probs=95.4
Q ss_pred CCceEEEEcCC-CCceeEEEecCCCCCeEEEeecCCC-eE-EEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEE
Q 003205 64 ALRKLRIFNSA-GVLISETVWKNPGGRLIGMSWSEDQ-TL-ICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVF 140 (839)
Q Consensus 64 ~~~~I~iy~~~-G~ll~ti~~~~~~~~I~~~~fs~de-~L-v~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~ 140 (839)
.+|.|++|+.. -.--.+|.-.+ ..+.+..||||| ++ .+-.-|-.+.+|++.-+-- ..+.|. ..++....|
T Consensus 69 k~~~vqvwsl~Qpew~ckIdeg~--agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~-~~~~~p----K~~~kg~~f 141 (447)
T KOG4497|consen 69 KDPKVQVWSLVQPEWYCKIDEGQ--AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG-YLLPHP----KTNVKGYAF 141 (447)
T ss_pred ccceEEEEEeecceeEEEeccCC--CcceeeeECCCcceEeeeecceeEEEEEEecccee-EEeccc----ccCceeEEE
Confidence 47899999964 23344455444 789999999999 44 4666677899998753321 122232 345667789
Q ss_pred ECCeEEEEecCCe----EEEEecCCCceEEEcCCCC---CCCCCceEEEeCCCCCCCCcEEEEEEe--CCeEEEEecCCc
Q 003205 141 WGNGVVCVTEANR----YFCMADFATMKVCELARPE---VEELPHCVAVIEPKYTMTGSVEVLIGT--DAGILMLDEDGV 211 (839)
Q Consensus 141 ~~~G~v~~t~~~~----~~~v~~~~~~~~~~l~~~~---~~~~~~~w~vi~~~~S~~~~~~v~~s~--d~tv~l~~~~~~ 211 (839)
.++|...+-.+.+ ++.+.. ...-+.+.+-. ++.+.. .+||||+.++.... +-.||....
T Consensus 142 ~~dg~f~ai~sRrDCkdyv~i~~--c~~W~ll~~f~~dT~Dltgi-------eWsPdg~~laVwd~~Leykv~aYe~--- 209 (447)
T KOG4497|consen 142 HPDGQFCAILSRRDCKDYVQISS--CKAWILLKEFKLDTIDLTGI-------EWSPDGNWLAVWDNVLEYKVYAYER--- 209 (447)
T ss_pred CCCCceeeeeecccHHHHHHHHh--hHHHHHHHhcCCCcccccCc-------eECCCCcEEEEecchhhheeeeeee---
Confidence 9999876665432 111110 01111111111 111222 34669988876654 444433221
Q ss_pred ccccCCCceEEEECCCCcEEEEeecCCeEEEEe
Q 003205 212 QKVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (839)
Q Consensus 212 ~~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~s 244 (839)
.-.+..++.||.|++||.++.|+.++|.+
T Consensus 210 ----~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 210 ----GLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred ----ccceeEEEeccccceEEeeccchhhhhhc
Confidence 13478899999999999999999877654
No 239
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.34 E-value=0.064 Score=68.22 Aligned_cols=193 Identities=10% Similarity=0.094 Sum_probs=113.1
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCC------------CCCeEEEeecCCCe-EEE
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNP------------GGRLIGMSWSEDQT-LIC 103 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~------------~~~I~~~~fs~de~-Lv~ 103 (839)
.+|+++.+|-|-++. +..+.|++|+.+|+.+..+..... +....++.|++++. |.+
T Consensus 572 gvavd~~~g~lyVaD-----------s~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYV 640 (1057)
T PLN02919 572 KLAIDLLNNRLFISD-----------SNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYV 640 (1057)
T ss_pred eEEEECCCCeEEEEE-----------CCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEE
Confidence 577877777666653 357889999999998877654211 13468999999876 444
Q ss_pred E-EeCCeEEEEeCCCCccccCCCCCcc------------ccccCeEEEEEEC-CeEEEEecC--CeEEEEecCCCceEEE
Q 003205 104 V-VQDGTVYRYNIHAELIEPNASMGKE------------CFEENVVECVFWG-NGVVCVTEA--NRYFCMADFATMKVCE 167 (839)
Q Consensus 104 v-~~dGtv~l~~~~G~~~~~~~g~~~~------------~~~~~V~~~~~~~-~G~v~~t~~--~~~~~v~~~~~~~~~~ 167 (839)
+ ..++.|+++++.+...++..|.... ..-..-+++.|.+ +|.++++.. ++++.++ ..+.....
T Consensus 641 aDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d-~~~g~v~~ 719 (1057)
T PLN02919 641 ADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYN-ISDGVTRV 719 (1057)
T ss_pred EeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEE-CCCCeEEE
Confidence 3 3457799998765554332221000 0001124677777 777766643 3455443 33333332
Q ss_pred cCCCC----CC---------CCCceEEEeCCCCCCCCcEEEEEEe-CCeEEEEecCCcc-c----c-------------c
Q 003205 168 LARPE----VE---------ELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDEDGVQ-K----V-------------D 215 (839)
Q Consensus 168 l~~~~----~~---------~~~~~w~vi~~~~S~~~~~~v~~s~-d~tv~l~~~~~~~-~----~-------------~ 215 (839)
+...+ .+ ..|+.. .++|+|+.+.+++. +++|..||.++.. . + .
T Consensus 720 ~~G~G~~~~~~g~~~~~~~~~~P~GI-----avspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~ 794 (1057)
T PLN02919 720 FSGDGYERNLNGSSGTSTSFAQPSGI-----SLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDH 794 (1057)
T ss_pred EecCCccccCCCCccccccccCccEE-----EEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCC
Confidence 22100 00 122222 24568886555554 7899999876321 0 0 0
Q ss_pred --------CCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 216 --------DTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 216 --------~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
...-..|+++|+|+..+.-+.+++|.+|+.+
T Consensus 795 dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~ 833 (1057)
T PLN02919 795 DGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA 833 (1057)
T ss_pred CCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC
Confidence 0112589999999877777778899999876
No 240
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=97.30 E-value=0.0011 Score=73.81 Aligned_cols=91 Identities=21% Similarity=0.215 Sum_probs=71.8
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeEEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYR 112 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv~l 112 (839)
.....+|||+|..+|+++ .|+.+|||+.+-+.|--+.-.. +|.+.+++|||||++ |++.+|--|.|
T Consensus 292 ~in~f~FS~DG~~LA~VS------------qDGfLRvF~fdt~eLlg~mkSY-FGGLLCvcWSPDGKyIvtGGEDDLVtV 358 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVS------------QDGFLRIFDFDTQELLGVMKSY-FGGLLCVCWSPDGKYIVTGGEDDLVTV 358 (636)
T ss_pred cccceeEcCCCceEEEEe------------cCceEEEeeccHHHHHHHHHhh-ccceEEEEEcCCccEEEecCCcceEEE
Confidence 566889999999999997 6999999999887665543333 499999999999995 79999999999
Q ss_pred EeCC-CCccccCCCCCccccccCeEEEEEEC
Q 003205 113 YNIH-AELIEPNASMGKECFEENVVECVFWG 142 (839)
Q Consensus 113 ~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~ 142 (839)
|++. ++..--=.|| ...|..++|=+
T Consensus 359 wSf~erRVVARGqGH-----kSWVs~VaFDp 384 (636)
T KOG2394|consen 359 WSFEERRVVARGQGH-----KSWVSVVAFDP 384 (636)
T ss_pred EEeccceEEEecccc-----ccceeeEeecc
Confidence 9974 4444445566 56777777643
No 241
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=97.26 E-value=0.013 Score=68.24 Aligned_cols=183 Identities=13% Similarity=0.084 Sum_probs=110.6
Q ss_pred cccCCceEEEEcCCCCce---eEEEe--cCCCCCeEEEeecCCC---eEEEEEeCCeEEEEeCCC-------CccccCC-
Q 003205 61 AESALRKLRIFNSAGVLI---SETVW--KNPGGRLIGMSWSEDQ---TLICVVQDGTVYRYNIHA-------ELIEPNA- 124 (839)
Q Consensus 61 ~~~~~~~I~iy~~~G~ll---~ti~~--~~~~~~I~~~~fs~de---~Lv~v~~dGtv~l~~~~G-------~~~~~~~- 124 (839)
++...|.|-+|+..+.-. +.+.. +...+.++.+.|..++ ++++++.||.|..|+++. .+.....
T Consensus 260 gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~ 339 (555)
T KOG1587|consen 260 GGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH 339 (555)
T ss_pred eeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccc
Confidence 346899999999655422 22222 2212789999999866 378999999999996542 1111111
Q ss_pred -CCCccccccCeEEEEEE---CCeEEEEecCCeEEEEecCC-CceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe
Q 003205 125 -SMGKECFEENVVECVFW---GNGVVCVTEANRYFCMADFA-TMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT 199 (839)
Q Consensus 125 -g~~~~~~~~~V~~~~~~---~~G~v~~t~~~~~~~v~~~~-~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~ 199 (839)
+... ....++..++|- ++-+++-|..|.++.-.... .+....+..+-.....+.-.|....++|=+...++.+.
T Consensus 340 ~~~~~-~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g 418 (555)
T KOG1587|consen 340 KGQQS-SKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG 418 (555)
T ss_pred ccccc-ccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec
Confidence 0000 113445666774 48889999999988754332 23331111100011111111222234445556677777
Q ss_pred CCeEEEEecC-Ccc-----cccCCCceEEEECCCC-cEEEEeecCCeEEEEe
Q 003205 200 DAGILMLDED-GVQ-----KVDDTLSQKMAVSPNG-NFVACFTHDGRLVVNN 244 (839)
Q Consensus 200 d~tv~l~~~~-~~~-----~~~~~~i~~ia~Spng-~~iA~~~~~g~i~i~s 244 (839)
|-+|.+|+.. ... ..+...+..++.||-- -..|+...+|+|.||+
T Consensus 419 DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD 470 (555)
T KOG1587|consen 419 DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD 470 (555)
T ss_pred cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence 9999999988 332 3455669999999986 3577777899999996
No 242
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.26 E-value=0.025 Score=59.58 Aligned_cols=205 Identities=17% Similarity=0.196 Sum_probs=121.9
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeE---EEecCCCCCeEEEeecCCCeEEEEE-eC-----
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISE---TVWKNPGGRLIGMSWSEDQTLICVV-QD----- 107 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~t---i~~~~~~~~I~~~~fs~de~Lv~v~-~d----- 107 (839)
.+++.-+-.-.|++. +.-.+|||.+= +.. -..+...-.++.|=|--+ -|+.|. .+
T Consensus 10 svs~NQD~ScFava~-------------~~Gfriyn~~P--~ke~~~r~~~~~G~~~veMLfR~N-~laLVGGg~~pky~ 73 (346)
T KOG2111|consen 10 SVSFNQDHSCFAVAT-------------DTGFRIYNCDP--FKESASRQFIDGGFKIVEMLFRSN-YLALVGGGSRPKYP 73 (346)
T ss_pred EEEEccCCceEEEEe-------------cCceEEEecCc--hhhhhhhccccCchhhhhHhhhhc-eEEEecCCCCCCCC
Confidence 466666666777764 34588888654 222 222221113455555422 233333 22
Q ss_pred -CeEEEEe-CCCCc-cccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCC-CceE-EEcCCCCCCCCCceEEE
Q 003205 108 -GTVYRYN-IHAEL-IEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFA-TMKV-CELARPEVEELPHCVAV 182 (839)
Q Consensus 108 -Gtv~l~~-~~G~~-~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~-~~~~-~~l~~~~~~~~~~~w~v 182 (839)
..|-+|| ..+.. .++.. ...|..+++.++-+|+++.+.-+ |+.+. .|+. ..+-. ...|...++
T Consensus 74 pNkviIWDD~k~~~i~el~f-------~~~I~~V~l~r~riVvvl~~~I~--VytF~~n~k~l~~~et---~~NPkGlC~ 141 (346)
T KOG2111|consen 74 PNKVIIWDDLKERCIIELSF-------NSEIKAVKLRRDRIVVVLENKIY--VYTFPDNPKLLHVIET---RSNPKGLCS 141 (346)
T ss_pred CceEEEEecccCcEEEEEEe-------ccceeeEEEcCCeEEEEecCeEE--EEEcCCChhheeeeec---ccCCCceEe
Confidence 3688995 55444 33333 44688999999999998876542 33332 2321 12211 133555666
Q ss_pred eCCCCCCCCcEEEEEEe-CCeEEEEecCCcc-------cccCCCceEEEECCCCcEEEEeecCCe-EEEEecCCCCcccc
Q 003205 183 IEPKYTMTGSVEVLIGT-DAGILMLDEDGVQ-------KVDDTLSQKMAVSPNGNFVACFTHDGR-LVVNNTNFSSPVID 253 (839)
Q Consensus 183 i~~~~S~~~~~~v~~s~-d~tv~l~~~~~~~-------~~~~~~i~~ia~Spng~~iA~~~~~g~-i~i~ssd~~~~l~e 253 (839)
+.|.- +...++.-+. -|.|.+.+..... ..|..+|..|+++-+|..||+++.+|| |+||++..+..+.|
T Consensus 142 ~~~~~--~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 142 LCPTS--NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred ecCCC--CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee
Confidence 66521 2223333332 4566666655332 568899999999999999999999999 88999998999999
Q ss_pred ccCCC-CCCCCceeeecCc
Q 003205 254 ESCES-ALPPEQIAWCGMD 271 (839)
Q Consensus 254 ~~~~~-~~~p~~~~WcG~d 271 (839)
+.-.. ......|++.-+.
T Consensus 220 ~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 220 LRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred eecCCchheEEEEEeCCCc
Confidence 86432 3344556655443
No 243
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.24 E-value=0.0044 Score=64.88 Aligned_cols=92 Identities=13% Similarity=0.132 Sum_probs=75.2
Q ss_pred CCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCC
Q 003205 186 KYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESAL 260 (839)
Q Consensus 186 ~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~ 260 (839)
.||+-|..++..-.||.|.+||..... ..|..||.+++.||+|+++.+.+.|..+.+|+---++.+.++..++
T Consensus 30 ~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~s-- 107 (405)
T KOG1273|consen 30 QFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDS-- 107 (405)
T ss_pred EeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccC--
Confidence 688899999999999999999988654 5788999999999999999999999999999865566776665553
Q ss_pred CCCceeee---cCceEEEEecC
Q 003205 261 PPEQIAWC---GMDSVLLYWND 279 (839)
Q Consensus 261 ~p~~~~Wc---G~d~vv~~~~~ 279 (839)
+.....|. -|.+|++..+.
T Consensus 108 pv~~~q~hp~k~n~~va~~~~~ 129 (405)
T KOG1273|consen 108 PVWGAQWHPRKRNKCVATIMEE 129 (405)
T ss_pred ccceeeeccccCCeEEEEEecC
Confidence 55666675 46677777665
No 244
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.23 E-value=0.037 Score=70.34 Aligned_cols=197 Identities=14% Similarity=0.099 Sum_probs=108.8
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCC---------------CCCeEEEeecC-CC
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNP---------------GGRLIGMSWSE-DQ 99 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~---------------~~~I~~~~fs~-de 99 (839)
..+++.++|+.|.++. .....|++++..+..+.++..... .....++.|+| ++
T Consensus 627 ~GIavd~~gn~LYVaD-----------t~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g 695 (1057)
T PLN02919 627 QGLAYNAKKNLLYVAD-----------TENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNE 695 (1057)
T ss_pred cEEEEeCCCCEEEEEe-----------CCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCC
Confidence 3556666666555542 245779999988888887754210 12457899999 56
Q ss_pred eE-EEEEeCCeEEEEeCCCCccccCCCCCcc----------ccccCeEEEEEECCeE-EEEe-cC-CeEEEEecCCCceE
Q 003205 100 TL-ICVVQDGTVYRYNIHAELIEPNASMGKE----------CFEENVVECVFWGNGV-VCVT-EA-NRYFCMADFATMKV 165 (839)
Q Consensus 100 ~L-v~v~~dGtv~l~~~~G~~~~~~~g~~~~----------~~~~~V~~~~~~~~G~-v~~t-~~-~~~~~v~~~~~~~~ 165 (839)
.+ |+-..++.|++|+..+.......|.... ..-.....+.++++|- ++++ .. +++..+ +.++...
T Consensus 696 ~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~-D~~tg~~ 774 (1057)
T PLN02919 696 KVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRAL-DLKTGGS 774 (1057)
T ss_pred eEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEE-ECCCCcE
Confidence 66 5666788899998643322111111000 0001223466777653 3333 22 334333 3322111
Q ss_pred EEcC--CC-------CCC-----------CCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----c--c-----
Q 003205 166 CELA--RP-------EVE-----------ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----K--V----- 214 (839)
Q Consensus 166 ~~l~--~~-------~~~-----------~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----~--~----- 214 (839)
..+. .+ ..+ ..|... .++++|.+.|.-+.+++|.+|+.++.. . +
T Consensus 775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv-----avd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~ 849 (1057)
T PLN02919 775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV-----LCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFK 849 (1057)
T ss_pred EEEEecccccCcccccccCCCCchhhhhccCCcee-----eEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCC
Confidence 1110 00 000 123322 245588866666669999999986542 0 1
Q ss_pred -------cCCCceEEEECCCCcEEEEeecCCeEEEEecCCCC
Q 003205 215 -------DDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSS 249 (839)
Q Consensus 215 -------~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~ 249 (839)
.......|+++|+|+.++.=+.+++|++|+.+-.+
T Consensus 850 dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 850 DGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 01135689999999977776778899999876444
No 245
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.21 E-value=0.058 Score=59.59 Aligned_cols=188 Identities=13% Similarity=0.096 Sum_probs=128.2
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCC----------CeEEEe-ecC-CCeEEE
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGG----------RLIGMS-WSE-DQTLIC 103 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~----------~I~~~~-fs~-de~Lv~ 103 (839)
|.--.+.+|.-|.-. .-+.|-+|++.-.-+.++.-.-+.. +.-.+. |++ +|++++
T Consensus 270 Y~R~~nsDGkrIvFq-------------~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia 336 (668)
T COG4946 270 YPRNANSDGKRIVFQ-------------NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIA 336 (668)
T ss_pred cccccCCCCcEEEEe-------------cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEE
Confidence 344566788877765 3588999999988888875541101 111122 555 677776
Q ss_pred EEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEE--CCeEEEEecCCeEEEEecCCCceEEEcCCCCCCCCCceEE
Q 003205 104 VVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFW--GNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVA 181 (839)
Q Consensus 104 v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~--~~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~ 181 (839)
.-+-|.+.+.+..+... ...|+ ..+|.-.++. +.|.++.|.+++...|-+..+....++.. ++ +.+ -+
T Consensus 337 ~VSRGkaFi~~~~~~~~-iqv~~-----~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~-~l-g~I--~a 406 (668)
T COG4946 337 LVSRGKAFIMRPWDGYS-IQVGK-----KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK-DL-GNI--EA 406 (668)
T ss_pred EEecCcEEEECCCCCee-EEcCC-----CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC-Cc-cce--EE
Confidence 66778888887655442 13445 5567777775 38999999999888887777666555532 22 222 23
Q ss_pred EeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCe----EEEEecCCCC
Q 003205 182 VIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGR----LVVNNTNFSS 249 (839)
Q Consensus 182 vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~----i~i~ssd~~~ 249 (839)
+ ..|+||..+|.+.....+++++.+.-. +...+-|+.+..|||+++||.+-.+|. |++++-+-++
T Consensus 407 v---~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 407 V---KVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred E---EEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 3 345599999888888899998877443 345566999999999999999988884 8888766333
No 246
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.059 Score=60.79 Aligned_cols=208 Identities=17% Similarity=0.201 Sum_probs=124.7
Q ss_pred EEEEcCCCCeE--EEEecCchhhhhhcccCCceEEEEcCCC-CceeEEEecCCC-CCeEEEeecCCCe--EEEEEe----
Q 003205 37 KVACAPFGGPI--AVIRDDSKIVQLYAESALRKLRIFNSAG-VLISETVWKNPG-GRLIGMSWSEDQT--LICVVQ---- 106 (839)
Q Consensus 37 ~va~sp~Gg~I--A~~~d~~k~~~~~~~~~~~~I~iy~~~G-~ll~ti~~~~~~-~~I~~~~fs~de~--Lv~v~~---- 106 (839)
..+.||-+.+- |+.--+ .......++||...- .+-..+.-.+++ ..=+.|-|++-|. |++++.
T Consensus 170 ~f~lSpgp~~~~vAvyvPe-------~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDk 242 (566)
T KOG2315|consen 170 MLSLSPGPEPPFVAVYVPE-------KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDK 242 (566)
T ss_pred eEEecCCCCCceEEEEccC-------CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecC
Confidence 45566655554 443222 124578899999762 222222211111 3458899999776 454443
Q ss_pred -------CCeEEEEeCCCCccccCCCCCccccccCeEEEEEECCe--EEEEecCCe-EEEEecCCCceEEEcCCCCCCCC
Q 003205 107 -------DGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNG--VVCVTEANR-YFCMADFATMKVCELARPEVEEL 176 (839)
Q Consensus 107 -------dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G--~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~ 176 (839)
..++++++.+|+-....+.. +..|.+++++++| ++++-+=+- -..+-|..+.-...|+ ..
T Consensus 243 tn~SYYGEq~Lyll~t~g~s~~V~L~k-----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~-----eg 312 (566)
T KOG2315|consen 243 TNASYYGEQTLYLLATQGESVSVPLLK-----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP-----EG 312 (566)
T ss_pred CCccccccceEEEEEecCceEEEecCC-----CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCC-----CC
Confidence 24666667777765555544 6779999988888 666554331 2233333322222233 34
Q ss_pred CceEEEeCCCCCCCCcEEEEEEeC---CeEEEEecCCcc---cccCCCceEEEECCCCcEEEEeecC------CeEEEEe
Q 003205 177 PHCVAVIEPKYTMTGSVEVLIGTD---AGILMLDEDGVQ---KVDDTLSQKMAVSPNGNFVACFTHD------GRLVVNN 244 (839)
Q Consensus 177 ~~~w~vi~~~~S~~~~~~v~~s~d---~tv~l~~~~~~~---~~~~~~i~~ia~Spng~~iA~~~~~------g~i~i~s 244 (839)
|..-. -|||.|+.+++++.+ |.+-+||..... ...-..-+-...||||+++.+.|.. +-++||.
T Consensus 313 pRN~~----~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 313 PRNTA----FFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred Cccce----EECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 44222 467799999999974 588999988754 2233334568999999999888854 3477776
Q ss_pred cCCCCccccccCCCCCCCCceeee
Q 003205 245 TNFSSPVIDESCESALPPEQIAWC 268 (839)
Q Consensus 245 sd~~~~l~e~~~~~~~~p~~~~Wc 268 (839)
-+ ++.+-+.+..+ ...|+.|-
T Consensus 389 yt-G~~l~~~~f~s--EL~qv~W~ 409 (566)
T KOG2315|consen 389 YT-GSLLHEKMFKS--ELLQVEWR 409 (566)
T ss_pred ec-CceeehhhhhH--hHhheeee
Confidence 55 56664443332 46788886
No 247
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=97.05 E-value=0.026 Score=58.62 Aligned_cols=178 Identities=15% Similarity=0.221 Sum_probs=105.1
Q ss_pred CceEEEEc--C-CCCceeEEEecCCCCCeEEEeecCCCe--EEEEEeC---C----eEEEEeCCCCccc-cCCCCC-ccc
Q 003205 65 LRKLRIFN--S-AGVLISETVWKNPGGRLIGMSWSEDQT--LICVVQD---G----TVYRYNIHAELIE-PNASMG-KEC 130 (839)
Q Consensus 65 ~~~I~iy~--~-~G~ll~ti~~~~~~~~I~~~~fs~de~--Lv~v~~d---G----tv~l~~~~G~~~~-~~~g~~-~~~ 130 (839)
++.|++-. . .|.+++..-.|. .|.|..++=+|-.+ |.++..+ . ...+|++..++.+ .+..-+ +..
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~-agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHH-AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcC-CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 45555543 3 445666655565 49999999999554 5566652 2 3678987755533 111100 000
Q ss_pred c----ccCeEEEEEECCeEEEEecCCeEEEEecCC-Cce-EEEcCCCCCCCCCceEEEeCCCCCC--CCcEEEEEEeCCe
Q 003205 131 F----EENVVECVFWGNGVVCVTEANRYFCMADFA-TMK-VCELARPEVEELPHCVAVIEPKYTM--TGSVEVLIGTDAG 202 (839)
Q Consensus 131 ~----~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~-~~~-~~~l~~~~~~~~~~~w~vi~~~~S~--~~~~~v~~s~d~t 202 (839)
+ ..+|..+.+.|||.-++....+-..+++.+ ++. ...++.+.-.+..+ ..-+-.+|| +|+ .+....|++
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~--~ftsg~WspHHdgn-qv~tt~d~t 194 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRH--SFTSGAWSPHHDGN-QVATTSDST 194 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccc--eecccccCCCCccc-eEEEeCCCc
Confidence 1 335666666678888777654433445554 333 22232211101011 122334555 333 455566889
Q ss_pred EEEEecCCcc------cccCCCceEEEECCCCcE-EEEeecCCeEEEEecC
Q 003205 203 ILMLDEDGVQ------KVDDTLSQKMAVSPNGNF-VACFTHDGRLVVNNTN 246 (839)
Q Consensus 203 v~l~~~~~~~------~~~~~~i~~ia~Spng~~-iA~~~~~g~i~i~ssd 246 (839)
+..||..... ..|...+..+-|.||-++ ||+.++||.++||+.-
T Consensus 195 l~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R 245 (370)
T KOG1007|consen 195 LQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR 245 (370)
T ss_pred EEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc
Confidence 9999988543 456677999999999885 8889999999999754
No 248
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.03 E-value=0.0026 Score=69.63 Aligned_cols=162 Identities=12% Similarity=0.109 Sum_probs=106.7
Q ss_pred CCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeEEEEeC-CCCcc-ccCCCCCccccccCeEEEEE
Q 003205 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNI-HAELI-EPNASMGKECFEENVVECVF 140 (839)
Q Consensus 64 ~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv~l~~~-~G~~~-~~~~g~~~~~~~~~V~~~~~ 140 (839)
.+..+.||+..|..+.-++-+ .++..+.|-|---| ++++..|..+--|. .|++. .+-.+. ..+...+-
T Consensus 189 QK~y~yvYD~~GtElHClk~~---~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~------G~~~vm~q 259 (545)
T KOG1272|consen 189 QKKYVYVYDNNGTELHCLKRH---IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA------GRTDVMKQ 259 (545)
T ss_pred hhceEEEecCCCcEEeehhhc---CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC------Cccchhhc
Confidence 478999999999999999854 68999999998875 78888887763375 68873 333322 11222344
Q ss_pred EC-CeEEEEecCCeEEEEecC--CCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----c
Q 003205 141 WG-NGVVCVTEANRYFCMADF--ATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----K 213 (839)
Q Consensus 141 ~~-~G~v~~t~~~~~~~v~~~--~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----~ 213 (839)
.| |+++-+--++-.+.+|.= .+|....|+.. ++.+..+| .+ +|...++.+.|..+.+||..... -
T Consensus 260 NP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~---g~V~siAv-~~----~G~YMaTtG~Dr~~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 260 NPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHR---GPVSSIAV-DR----GGRYMATTGLDRKVKIWDLRNFYQLHTY 331 (545)
T ss_pred CCccceEEEcCCCceEEecCCCCcchHHHHHhcC---CCcceEEE-CC----CCcEEeecccccceeEeeecccccccee
Confidence 55 443333333334555542 23444444431 33444433 33 99999999999999999998764 1
Q ss_pred ccCCCceEEEECCCCcEEEEeecCCeEEEEe
Q 003205 214 VDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (839)
Q Consensus 214 ~~~~~i~~ia~Spng~~iA~~~~~g~i~i~s 244 (839)
-...|...++||-.| .+|+...+ .+.||.
T Consensus 332 ~tp~~a~~ls~Sqkg-lLA~~~G~-~v~iw~ 360 (545)
T KOG1272|consen 332 RTPHPASNLSLSQKG-LLALSYGD-HVQIWK 360 (545)
T ss_pred ecCCCcccccccccc-ceeeecCC-eeeeeh
Confidence 225678899999998 66665543 577775
No 249
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=97.03 E-value=0.016 Score=59.52 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=60.3
Q ss_pred cCEEEEEcCCCCceEeccCCCeEEeecCCc-eEEEccCcceeeeccchhhHhhhccCCCChhhhHHHHHH
Q 003205 278 NDMLVMVAPQAEPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALD 346 (839)
Q Consensus 278 ~~~l~lig~~~~~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~~~~vf~igS~~pga~L~~A~~ 346 (839)
..++.+-.|.-..|+.-+|+.+.....-|| +||++=.++.-|-.+.-|..-|-.+.+++...++..|++
T Consensus 244 ~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaask 313 (323)
T KOG0322|consen 244 RKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASK 313 (323)
T ss_pred cceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccC
Confidence 457889989888999999999999999999 999999999999888888888888888888777776654
No 250
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=97.01 E-value=0.029 Score=57.01 Aligned_cols=168 Identities=11% Similarity=0.058 Sum_probs=91.3
Q ss_pred CCceEEEEc-CCCCceeEEEecCCCCCeEEEee-cCCCeEEEEEeCCeEEEEeC-CCCccccCCCCCc-cccc--cCeEE
Q 003205 64 ALRKLRIFN-SAGVLISETVWKNPGGRLIGMSW-SEDQTLICVVQDGTVYRYNI-HAELIEPNASMGK-ECFE--ENVVE 137 (839)
Q Consensus 64 ~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~f-s~de~Lv~v~~dGtv~l~~~-~G~~~~~~~g~~~-~~~~--~~V~~ 137 (839)
.|+.|.-|+ -+|+.-.++++|. +-|.++.= +.+++++++.+|||||+||. .++-.+..-.... +++. .+=+-
T Consensus 134 GD~~~y~~dlE~G~i~r~~rGHt--DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi 211 (325)
T KOG0649|consen 134 GDGVIYQVDLEDGRIQREYRGHT--DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI 211 (325)
T ss_pred CCeEEEEEEecCCEEEEEEcCCc--ceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee
Confidence 589999999 5899999999999 99999887 77899999999999999985 4554332211110 1111 01010
Q ss_pred EEEECCeEEEEecCCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----c
Q 003205 138 CVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----K 213 (839)
Q Consensus 138 ~~~~~~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----~ 213 (839)
-.+-.+---++.+.|.-..+|++.+..+...-.++ ...+.-.. +...++.++.++.|-.|...|.. +
T Consensus 212 gala~~edWlvCGgGp~lslwhLrsse~t~vfpip--a~v~~v~F-------~~d~vl~~G~g~~v~~~~l~Gvl~a~ip 282 (325)
T KOG0649|consen 212 GALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIP--ARVHLVDF-------VDDCVLIGGEGNHVQSYTLNGVLQANIP 282 (325)
T ss_pred EEEeccCceEEecCCCceeEEeccCCCceEEEecc--cceeEeee-------ecceEEEeccccceeeeeeccEEEEecc
Confidence 11111111222233332233333322111111100 11111111 44556666667788888888864 1
Q ss_pred c--cCCCceEEEECCCCcEEEEeecCCeEEEE
Q 003205 214 V--DDTLSQKMAVSPNGNFVACFTHDGRLVVN 243 (839)
Q Consensus 214 ~--~~~~i~~ia~Spng~~iA~~~~~g~i~i~ 243 (839)
. +.--......||- ++|..++.+..+.|.
T Consensus 283 ~~s~~c~s~s~~~~p~-k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 283 VESTACYSASWQTSPI-KFISIAGFSNKLHIL 313 (325)
T ss_pred CCccceeeecccCCce-EEEEecccceeeeee
Confidence 1 1111334455564 577666666667766
No 251
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.00 E-value=0.86 Score=57.98 Aligned_cols=109 Identities=16% Similarity=0.218 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCcchHHhHHhHcC----CChHHHHHHHHHHHHhCCChhHHHHhhcc------CCCCCCchHHHHHHHhc
Q 003205 695 SDTIRTCIVLGNHRAAMKVKTEFK----VSEKRWYWLKVFALATKRDWDALERFSKE------KRPPIGYRPFVEACVDA 764 (839)
Q Consensus 695 ~~ti~~l~~~~~~k~a~~l~k~fk----vsdkr~~~~kl~ala~~~~w~~L~~f~~~------KKspIgyepfv~~~~~~ 764 (839)
+..|..+.+.|+.+.|.++-++.. .|+...|-..|.++++.++.++-.++... +-..+-|-..+..|.+.
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~ 697 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 445555556666555555433332 34555566666666666666554444321 11234455566666666
Q ss_pred CCHHHHHHhhccC------CCH---HHHHHHHHHcCCHHHHHHHHHhc
Q 003205 765 DEKGEALKYIPKL------VDP---RERAEAYARIGMAKEAADAASQA 803 (839)
Q Consensus 765 ~~~~ea~~yI~~i------~d~---~~r~~~~~~~~~~~~A~~~a~~~ 803 (839)
|..++|.++...| +|. .--+..|.+.|++++|.+...+.
T Consensus 698 G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666665555543 222 44556666666666666655543
No 252
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=96.95 E-value=0.0077 Score=72.07 Aligned_cols=133 Identities=15% Similarity=0.170 Sum_probs=92.3
Q ss_pred cCCceEEEEcCCCCceeE-EEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeCC-CCcc-ccCCCCCccccccCeEEE
Q 003205 63 SALRKLRIFNSAGVLISE-TVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIH-AELI-EPNASMGKECFEENVVEC 138 (839)
Q Consensus 63 ~~~~~I~iy~~~G~ll~t-i~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~-G~~~-~~~~g~~~~~~~~~V~~~ 138 (839)
+.-+.|-+|...+.-... +.+|. |.|.++.|+.||. ++++++|.++|+|.+. ++.. -+-.|| ..+|+++
T Consensus 152 sv~~~iivW~~~~dn~p~~l~GHe--G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH-----saRvw~~ 224 (967)
T KOG0974|consen 152 SVFGEIIVWKPHEDNKPIRLKGHE--GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH-----SARVWAC 224 (967)
T ss_pred cccccEEEEeccccCCcceecccC--CceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccc-----cceeEEE
Confidence 345667788877665555 88898 9999999999998 5899999999999863 4543 378889 7789999
Q ss_pred EEECCeEEEEecCCeE-EEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCc-EEEEEEeCCeEEEEecCCc
Q 003205 139 VFWGNGVVCVTEANRY-FCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGS-VEVLIGTDAGILMLDEDGV 211 (839)
Q Consensus 139 ~~~~~G~v~~t~~~~~-~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~-~~v~~s~d~tv~l~~~~~~ 211 (839)
.|.++ -+.|.+-+. -.+|..++.....+... ...+.|.++-+ .+. ..++.+.|+++.+|+..+.
T Consensus 225 ~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h---~g~~iw~~~~~----~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 225 CFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEH---SGKGIWKIAVP----IGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred Eeccc--eeEEeccceEEEEEecccceehhhhhh---hhcceeEEEEc----CCceEEEeeccCcchhhhhhhcc
Confidence 99999 556655442 34454443333322210 23567987443 444 5566667999999987743
No 253
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=96.94 E-value=0.0011 Score=67.85 Aligned_cols=68 Identities=13% Similarity=0.209 Sum_probs=61.4
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVY 111 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv~ 111 (839)
...-|.+=|+|...|+++ .|+.||||+ ..++++..+++|. +.|.+++|||+..| +.++.|++|-
T Consensus 253 Gv~gvrIRpD~KIlATAG------------WD~RiRVyswrtl~pLAVLkyHs--agvn~vAfspd~~lmAaaskD~rIS 318 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAG------------WDHRIRVYSWRTLNPLAVLKYHS--AGVNAVAFSPDCELMAAASKDARIS 318 (323)
T ss_pred CccceEEccCCcEEeecc------------cCCcEEEEEeccCCchhhhhhhh--cceeEEEeCCCCchhhhccCCceEE
Confidence 445788999999999986 899999999 5899999999999 99999999999665 7999999999
Q ss_pred EEeC
Q 003205 112 RYNI 115 (839)
Q Consensus 112 l~~~ 115 (839)
+|++
T Consensus 319 LWkL 322 (323)
T KOG0322|consen 319 LWKL 322 (323)
T ss_pred eeec
Confidence 9975
No 254
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.93 E-value=1.6 Score=53.46 Aligned_cols=408 Identities=14% Similarity=0.084 Sum_probs=214.1
Q ss_pred HHHHHHHHHccccCCHHHHHHHHHHhchhcccccccChhHHHHHhhhhhhhhccCCCCCcccccHHHHHhCChHHHHHHH
Q 003205 368 KAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRL 447 (839)
Q Consensus 368 ~AV~~CI~AA~~e~d~~~Qk~LL~AAsfGk~f~~~~~~~~fv~~c~~LRvLn~lr~~~igi~lT~~Q~~~l~~~~li~rL 447 (839)
.++-.-+...+.+.|+.....|+.+ |+|. .. + -.-.+|++.+..|+ ..+...++.-+
T Consensus 143 ~~l~~~m~~~g~~~~~~~~n~Li~~--y~k~--g~------~--~~A~~lf~~m~~~~-----------~~t~n~li~~~ 199 (697)
T PLN03081 143 KAVYWHVESSGFEPDQYMMNRVLLM--HVKC--GM------L--IDARRLFDEMPERN-----------LASWGTIIGGL 199 (697)
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHH--HhcC--CC------H--HHHHHHHhcCCCCC-----------eeeHHHHHHHH
Confidence 3444445556666677777777654 2221 11 1 12356667666543 23457899999
Q ss_pred HHcCChHHHHHHHHHh---CCChh-hHHHHh--HhhhhhhcCCCCh-HHHHHHHHHHhccCC-CCCHHHHHHHHHHhCcH
Q 003205 448 INANCHLLALRISEYL---GMNQE-VVIMHW--ACSKITASLAIPD-VTLLEILLDKLKLCK-GISYAAVAAHADKSGRR 519 (839)
Q Consensus 448 ~~r~~~~lA~~I~~~l---~~~~~-~I~~~W--A~~kI~~~~~~~D-~~l~~~I~~kl~~~~-~is~~~IA~~A~~~gR~ 519 (839)
+..+.+..|+++-+-+ |..++ ..+... ||.+. ..... .++...+ .|....+ ...|..+...-.++|+.
T Consensus 200 ~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~---~~~~~~~~l~~~~-~~~g~~~d~~~~n~Li~~y~k~g~~ 275 (697)
T PLN03081 200 VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL---GSARAGQQLHCCV-LKTGVVGDTFVSCALIDMYSKCGDI 275 (697)
T ss_pred HHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC---CcHHHHHHHHHHH-HHhCCCccceeHHHHHHHHHHCCCH
Confidence 9999999999998765 33332 333333 33332 11111 2222222 2222222 35677778888889999
Q ss_pred HHHHHHHhcCCCCCCchhhhhccCchHHHHHHHHHcCCchHHHHHHHHHHhh-CChh--HHHHHHh------cChhHHHH
Q 003205 520 KLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQK-RPAL--EFFGMIQ------TRPLACDL 590 (839)
Q Consensus 520 ~LA~~Ll~~E~~~~~qV~lLl~~~~~~~AL~~Ai~S~D~dLI~~vll~l~~~-l~~~--~f~~~l~------~~p~a~~~ 590 (839)
+-|..+++.=+... + --|...+.--.+.|+.+-...++-.|.+. ..+. .|..+|. ....|..+
T Consensus 276 ~~A~~vf~~m~~~~--~------vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i 347 (697)
T PLN03081 276 EDARCVFDGMPEKT--T------VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA 347 (697)
T ss_pred HHHHHHHHhCCCCC--h------hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHH
Confidence 99999987654321 1 12334444444555555555544444332 1111 1111111 01122222
Q ss_pred HHHHHHhc------CHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHhhhhhccccchHH
Q 003205 591 FTVYARCY------KHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEKAHSLFSETKEHTFES 664 (839)
Q Consensus 591 ~~~y~~~~------~~~~L~~~~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~~~~~~~k~~~L~~a~~~~~~~~~~~f~~ 664 (839)
+....+.+ -...|.+.|-..++..+ |.-.+.+.. ..+.. .-......|.+...
T Consensus 348 ~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~-A~~vf~~m~-~~d~~--------------t~n~lI~~y~~~G~----- 406 (697)
T PLN03081 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMED-ARNVFDRMP-RKNLI--------------SWNALIAGYGNHGR----- 406 (697)
T ss_pred HHHHHHhCCCCCeeehHHHHHHHHHCCCHHH-HHHHHHhCC-CCCee--------------eHHHHHHHHHHcCC-----
Confidence 22222211 12333444444333322 222222111 11110 11122223333222
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccCCCHHHHHHHHHHcCCcchHHh----HHhHcCCCh-HHHHHHHHHHHHhCCChh
Q 003205 665 KAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMK----VKTEFKVSE-KRWYWLKVFALATKRDWD 739 (839)
Q Consensus 665 ~~~~~~~~Ll~~Q~~Le~~~~~~~f~~~Sl~~ti~~l~~~~~~k~a~~----l~k~fkvsd-kr~~~~kl~ala~~~~w~ 739 (839)
.++-.++++. +.+ .+. .....+....|..|...|..+.+.+ +.+++++.+ ...|-+.+..|++.|+++
T Consensus 407 --~~~A~~lf~~---M~~-~g~-~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 407 --GTKAVEMFER---MIA-EGV-APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred --HHHHHHHHHH---HHH-hCC-CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 2233333322 111 111 1223455667777888888766555 456677754 457889999999999999
Q ss_pred HHHHhhccC---CCCCCchHHHHHHHhcCCHHHHHHhhccCC--------CHHHHHHHHHHcCCHHHHHHHHHhcCCHHH
Q 003205 740 ALERFSKEK---RPPIGYRPFVEACVDADEKGEALKYIPKLV--------DPRERAEAYARIGMAKEAADAASQAKDGEL 808 (839)
Q Consensus 740 ~L~~f~~~K---KspIgyepfv~~~~~~~~~~ea~~yI~~i~--------d~~~r~~~~~~~~~~~~A~~~a~~~kd~~~ 808 (839)
+-.++.++. -+..-|..++.+|..+|+.+.|.+...++- ...--+.+|.+.|.|++|.++..+.++...
T Consensus 480 eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999998642 122337788999999999988776655431 235667899999999999999877765432
Q ss_pred HH-------HHHHH----------hcCChhHHHHHHHHHHHhhhcCC
Q 003205 809 LG-------RLKLT----------FAQNAAASSIFDTLRDRLSFQGV 838 (839)
Q Consensus 809 L~-------~i~~~----------~~~~~~~~~~i~~~~~~~~~~~~ 838 (839)
-+ ++..+ -|....+.+.++.+..++.+.|.
T Consensus 560 ~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy 606 (697)
T PLN03081 560 SMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGY 606 (697)
T ss_pred ccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 10 01000 12223455666777777777664
No 255
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=96.87 E-value=0.03 Score=59.54 Aligned_cols=160 Identities=13% Similarity=0.159 Sum_probs=93.9
Q ss_pred eEEEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEEE----CCeEEEEecCCeEE--EEecCCCceEEEcCCCC
Q 003205 100 TLICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFW----GNGVVCVTEANRYF--CMADFATMKVCELARPE 172 (839)
Q Consensus 100 ~Lv~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~----~~G~v~~t~~~~~~--~v~~~~~~~~~~l~~~~ 172 (839)
.+++..++|+|++||. .|+..+...++ ...+..++|. ++|+...+.+|.+- -+........+....-+
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~-----~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~ 116 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGP-----PATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS 116 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCC-----CCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence 3578899999999985 57775555555 3445566664 46777777777543 22222111111111100
Q ss_pred CCCCCceEEEeCCCCCCCCcEEEEEE----eCCeEEEEecCCcc-------cccCCCceEEEECCCC-cEEEEeecCCeE
Q 003205 173 VEELPHCVAVIEPKYTMTGSVEVLIG----TDAGILMLDEDGVQ-------KVDDTLSQKMAVSPNG-NFVACFTHDGRL 240 (839)
Q Consensus 173 ~~~~~~~w~vi~~~~S~~~~~~v~~s----~d~tv~l~~~~~~~-------~~~~~~i~~ia~Spng-~~iA~~~~~g~i 240 (839)
+.+..|.+... .++.++... .+-.|++||....+ ..|..-|+++.|.|+. ..+++++-||-+
T Consensus 117 -~~~f~~ld~nc-----k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLv 190 (376)
T KOG1188|consen 117 -GTPFICLDLNC-----KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLV 190 (376)
T ss_pred -CCcceEeeccC-----cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceE
Confidence 01112222211 233443332 25678999977554 4678889999999987 689999999999
Q ss_pred EEEecCCC---CccccccCCCCCCCCceeeecCc
Q 003205 241 VVNNTNFS---SPVIDESCESALPPEQIAWCGMD 271 (839)
Q Consensus 241 ~i~ssd~~---~~l~e~~~~~~~~p~~~~WcG~d 271 (839)
-|++..-. +.| ....+..+....+.|.|..
T Consensus 191 nlfD~~~d~EeDaL-~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 191 NLFDTKKDNEEDAL-LHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred EeeecCCCcchhhH-HHhhcccceeeeeeeecCC
Confidence 99876422 111 1222333456788888765
No 256
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=96.82 E-value=0.18 Score=57.03 Aligned_cols=110 Identities=16% Similarity=0.282 Sum_probs=66.6
Q ss_pred CeEEEEecCCcc----cccCCCceEEEECCCCc-EEEEeec-CCeEEEEecCCCCccccccCCCCCCCCceeee--cCce
Q 003205 201 AGILMLDEDGVQ----KVDDTLSQKMAVSPNGN-FVACFTH-DGRLVVNNTNFSSPVIDESCESALPPEQIAWC--GMDS 272 (839)
Q Consensus 201 ~tv~l~~~~~~~----~~~~~~i~~ia~Spng~-~iA~~~~-~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~Wc--G~d~ 272 (839)
.++|+++.+|.. ....|||+.+.+||+|+ |.++++- --.+-|++.+ ...+ |+.. +.+-..+-|. |+=.
T Consensus 251 q~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v--~df~-egpRN~~~fnp~g~ii 326 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPV--FDFP-EGPRNTAFFNPHGNII 326 (566)
T ss_pred ceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEe--EeCC-CCCccceEECCCCCEE
Confidence 489999888654 34589999999999995 5555542 2346676655 4444 3333 2244566665 3333
Q ss_pred EEEEecC---------------EEEEEcCCCCceEeccCCCeEEeec------CC-ceEEEccC
Q 003205 273 VLLYWND---------------MLVMVAPQAEPVQYFYDEPLVLIPE------CD-GVRILSNS 314 (839)
Q Consensus 273 vv~~~~~---------------~l~lig~~~~~v~f~~~~~~~l~~E------~D-GvRIit~~ 314 (839)
+++-|.+ ...+..++.....|.+||..+++.- +| |+|||.=+
T Consensus 327 ~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 327 LLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred EEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 3333432 1123334445778888888765432 55 79999776
No 257
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.80 E-value=0.28 Score=52.96 Aligned_cols=195 Identities=15% Similarity=0.181 Sum_probs=109.9
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC--CCCceeEE--EecCC--------CCCeEEEeecCCCeEEE
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS--AGVLISET--VWKNP--------GGRLIGMSWSEDQTLIC 103 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~--~G~ll~ti--~~~~~--------~~~I~~~~fs~de~Lv~ 103 (839)
+.|+++++|..+.++.= ..+.|.+|=. +|.+...+ .-|.. ........|||+++.++
T Consensus 92 ~yvsvd~~g~~vf~AnY-----------~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~ 160 (346)
T COG2706 92 CYVSVDEDGRFVFVANY-----------HSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLV 160 (346)
T ss_pred eEEEECCCCCEEEEEEc-----------cCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEE
Confidence 78899999988887751 3577777753 56654442 22330 12389999999998766
Q ss_pred EEeCCe--EEEEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEec---CCe--EEEEecCCCceE---EEcCCCC
Q 003205 104 VVQDGT--VYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTE---ANR--YFCMADFATMKV---CELARPE 172 (839)
Q Consensus 104 v~~dGt--v~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~---~~~--~~~v~~~~~~~~---~~l~~~~ 172 (839)
+-+=|+ |.+|++ +|.+.....-.-.+ -.+-..+.|.|+|.++-.. ++. +|..++. ..+. +.+...+
T Consensus 161 v~DLG~Dri~~y~~~dg~L~~~~~~~v~~--G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP 237 (346)
T COG2706 161 VPDLGTDRIFLYDLDDGKLTPADPAEVKP--GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLP 237 (346)
T ss_pred EeecCCceEEEEEcccCccccccccccCC--CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCc
Confidence 655554 667765 67663221111111 4455778999999886553 333 3444442 1222 2333333
Q ss_pred CCCCCceEEE-eCCCCCCCCcEEEEEEeCC-eE--EEEecCCcc-------cccCCCceEEEECCCCcEEEEeecCC-eE
Q 003205 173 VEELPHCVAV-IEPKYTMTGSVEVLIGTDA-GI--LMLDEDGVQ-------KVDDTLSQKMAVSPNGNFVACFTHDG-RL 240 (839)
Q Consensus 173 ~~~~~~~w~v-i~~~~S~~~~~~v~~s~d~-tv--~l~~~~~~~-------~~~~~~i~~ia~Spng~~iA~~~~~g-~i 240 (839)
.+-+...|+. | ..|+||..+....... .| +.++..+.. ..+...=....|+|.|++|..+++++ +|
T Consensus 238 ~dF~g~~~~aaI--his~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i 315 (346)
T COG2706 238 EDFTGTNWAAAI--HISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNI 315 (346)
T ss_pred cccCCCCceeEE--EECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcE
Confidence 2322233532 2 2345888776554422 33 334444432 12222135788999999988888765 57
Q ss_pred EEEecC
Q 003205 241 VVNNTN 246 (839)
Q Consensus 241 ~i~ssd 246 (839)
.++..|
T Consensus 316 ~vf~~d 321 (346)
T COG2706 316 TVFERD 321 (346)
T ss_pred EEEEEc
Confidence 777655
No 258
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=96.80 E-value=0.048 Score=61.23 Aligned_cols=240 Identities=12% Similarity=0.097 Sum_probs=115.4
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecC-----CCCCeEEEeecCCCe-EEEE-Ee
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKN-----PGGRLIGMSWSEDQT-LICV-VQ 106 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~-----~~~~I~~~~fs~de~-Lv~v-~~ 106 (839)
-..+++||+|..+++..- ..+.+.|++ .+.+++.+|+-.. +.+++.++-.+|... +++. -+
T Consensus 80 ~~~i~~s~DG~~~~v~n~-----------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd 148 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANY-----------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD 148 (369)
T ss_dssp EEEEEE--TTTEEEEEEE-----------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT
T ss_pred cceEEEcCCCCEEEEEec-----------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc
Confidence 357899999999988752 478999999 5788999987642 124789999999877 5544 44
Q ss_pred CCeEEEEeCCC-Cc-cccCCCCCccccccCeEEEEEECCeEEEEe---cCCeEEEEecCCCceEEEcCCCCCC-------
Q 003205 107 DGTVYRYNIHA-EL-IEPNASMGKECFEENVVECVFWGNGVVCVT---EANRYFCMADFATMKVCELARPEVE------- 174 (839)
Q Consensus 107 dGtv~l~~~~G-~~-~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t---~~~~~~~v~~~~~~~~~~l~~~~~~------- 174 (839)
.|.|-+.|+.. +. ....+.. ..-..+.-+.++|--++. .++++..++ ..+.....+.+.+-.
T Consensus 149 ~~~I~vVdy~d~~~~~~~~i~~-----g~~~~D~~~dpdgry~~va~~~sn~i~viD-~~~~k~v~~i~~g~~p~~~~~~ 222 (369)
T PF02239_consen 149 TGEIWVVDYSDPKNLKVTTIKV-----GRFPHDGGFDPDGRYFLVAANGSNKIAVID-TKTGKLVALIDTGKKPHPGPGA 222 (369)
T ss_dssp TTEEEEEETTTSSCEEEEEEE-------TTEEEEEE-TTSSEEEEEEGGGTEEEEEE-TTTTEEEEEEE-SSSBEETTEE
T ss_pred CCeEEEEEeccccccceeeecc-----cccccccccCcccceeeecccccceeEEEe-eccceEEEEeeccccccccccc
Confidence 57777777543 22 1112211 223456777778844333 233444444 333322221111100
Q ss_pred --CCCce---EEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEe---e-cCCeE
Q 003205 175 --ELPHC---VAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACF---T-HDGRL 240 (839)
Q Consensus 175 --~~~~~---w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~---~-~~g~i 240 (839)
..|.+ |..-. .+...+..-..+.+.+++...-. ....++ .-|..|||++++..- + ..++|
T Consensus 223 ~~php~~g~vw~~~~-----~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v 296 (369)
T PF02239_consen 223 NFPHPGFGPVWATSG-----LGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTV 296 (369)
T ss_dssp EEEETTTEEEEEEEB-----SSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-E
T ss_pred cccCCCcceEEeecc-----ccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceE
Confidence 01122 54422 22332222222233445544332 334455 788999999998886 2 33568
Q ss_pred EEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCCceEeccCCCeEEeecCC--c-eEEEccCcce
Q 003205 241 VVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECD--G-VRILSNSSME 317 (839)
Q Consensus 241 ~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~~~l~~E~D--G-vRIit~~~~~ 317 (839)
.|++..--+....+.......+. .+.|+.||..+.++.-| | |.|+....++
T Consensus 297 ~viD~~tl~~~~~i~~~~~~~~~--------------------------h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 297 QVIDKKTLKVVKTITPGPGKRVV--------------------------HMEFNPDGKEVWVSVWDGNGAIVVYDAKTLK 350 (369)
T ss_dssp EEEECCGTEEEE-HHHHHT--EE--------------------------EEEE-TTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred EEEECcCcceeEEEeccCCCcEe--------------------------ccEECCCCCEEEEEEecCCCEEEEEECCCcE
Confidence 88765422222111111000111 45566666655444433 3 8999999999
Q ss_pred eeeccc
Q 003205 318 FLQRVP 323 (839)
Q Consensus 318 ~l~~Vp 323 (839)
.+.++|
T Consensus 351 ~~~~i~ 356 (369)
T PF02239_consen 351 EKKRIP 356 (369)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999998
No 259
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.80 E-value=0.0037 Score=69.68 Aligned_cols=150 Identities=15% Similarity=0.146 Sum_probs=97.3
Q ss_pred eeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeEEEEeCCC-Cc-cccCCCCCccccccCeEEEEEEC--CeEEEEecCC
Q 003205 78 ISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNIHA-EL-IEPNASMGKECFEENVVECVFWG--NGVVCVTEAN 152 (839)
Q Consensus 78 l~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv~l~~~~G-~~-~~~~~g~~~~~~~~~V~~~~~~~--~G~v~~t~~~ 152 (839)
-..+.+|+ |=|.++.|+.||.| +++++|-.+-|||... ++ ...+.|| ...|-.++|-| +.-.++|+.+
T Consensus 43 E~eL~GH~--GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgH-----taNIFsvKFvP~tnnriv~sgAg 115 (758)
T KOG1310|consen 43 EAELTGHT--GCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGH-----TANIFSVKFVPYTNNRIVLSGAG 115 (758)
T ss_pred hhhhcccc--ceecceeecCCCCEEeecCCcceEEeecchhcceeeeeeccc-----ccceeEEeeeccCCCeEEEeccC
Confidence 34577899 99999999999995 7999999999998653 33 5567788 67899999977 5556677666
Q ss_pred e-EEEEecCCCceEEEcCCCCCCCCCceEEEeC-----CCCCCCC-cEEEEEEeCCeEEEEecCCcc-cccCCCceEEEE
Q 003205 153 R-YFCMADFATMKVCELARPEVEELPHCVAVIE-----PKYTMTG-SVEVLIGTDAGILMLDEDGVQ-KVDDTLSQKMAV 224 (839)
Q Consensus 153 ~-~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~-----~~~S~~~-~~~v~~s~d~tv~l~~~~~~~-~~~~~~i~~ia~ 224 (839)
+ ++.+-+++.....-... +...+.+||.+-. ..--|++ .+.-.++.||++...|..+.. -.+.+.+..+..
T Consensus 116 Dk~i~lfdl~~~~~~~~d~-~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ 194 (758)
T KOG1310|consen 116 DKLIKLFDLDSSKEGGMDH-GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILV 194 (758)
T ss_pred cceEEEEeccccccccccc-CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHH
Confidence 4 56666655322211111 1113456675411 0011234 456666778888877777644 334555777888
Q ss_pred CCCCcEEEEee
Q 003205 225 SPNGNFVACFT 235 (839)
Q Consensus 225 Spng~~iA~~~ 235 (839)
+-+++.|-+.+
T Consensus 195 ny~~~lielk~ 205 (758)
T KOG1310|consen 195 NYNPQLIELKC 205 (758)
T ss_pred Hhchhhheeee
Confidence 88887754443
No 260
>PLN03077 Protein ECB2; Provisional
Probab=96.74 E-value=2.5 Score=53.26 Aligned_cols=86 Identities=8% Similarity=0.078 Sum_probs=50.3
Q ss_pred ChHHHHHHHHHcCChHHHHHHHHHh---CCChhh----HHHHhHhhhhhhcCCCC-hHHHHHHHHHHhccCC-CCCHHHH
Q 003205 439 TASVLIGRLINANCHLLALRISEYL---GMNQEV----VIMHWACSKITASLAIP-DVTLLEILLDKLKLCK-GISYAAV 509 (839)
Q Consensus 439 ~~~~li~rL~~r~~~~lA~~I~~~l---~~~~~~----I~~~WA~~kI~~~~~~~-D~~l~~~I~~kl~~~~-~is~~~I 509 (839)
+...+|.-++..+.+..|+++-+-+ |+.|+. .+.. ||.+. . +.+ -.++...+.++ ...| ...|..+
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~-a~~~~-g--~~~~a~~l~~~~~~~-g~~~d~~~~n~L 329 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS-ACELL-G--DERLGREMHGYVVKT-GFAVDVSVCNSL 329 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH-HHHhc-C--ChHHHHHHHHHHHHh-CCccchHHHHHH
Confidence 4678999999999999999987764 555542 2222 34433 1 111 12333333222 1112 2456666
Q ss_pred HHHHHHhCcHHHHHHHHhcC
Q 003205 510 AAHADKSGRRKLAAMLVEHE 529 (839)
Q Consensus 510 A~~A~~~gR~~LA~~Ll~~E 529 (839)
...-.++|+.+-|.++++.=
T Consensus 330 i~~y~k~g~~~~A~~vf~~m 349 (857)
T PLN03077 330 IQMYLSLGSWGEAEKVFSRM 349 (857)
T ss_pred HHHHHhcCCHHHHHHHHhhC
Confidence 66667788888888877653
No 261
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=96.62 E-value=0.0036 Score=45.33 Aligned_cols=32 Identities=31% Similarity=0.467 Sum_probs=29.7
Q ss_pred cccCCCceEEEECCCCcEEEEeecCCeEEEEe
Q 003205 213 KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (839)
Q Consensus 213 ~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~s 244 (839)
..+.++|..|+++|++.++|+++.||+|++|+
T Consensus 8 ~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 8 RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46778999999999999999999999999995
No 262
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=96.62 E-value=0.094 Score=57.02 Aligned_cols=159 Identities=12% Similarity=0.134 Sum_probs=87.4
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCC-----ceeEEEecCCCCCeEEEeecCCCe-EEEEEe
Q 003205 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV-----LISETVWKNPGGRLIGMSWSEDQT-LICVVQ 106 (839)
Q Consensus 33 l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~-----ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~ 106 (839)
+....+..+|.|..+|++.++ ....+|...++ ++....... +-.++.|-.++. .+++..
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~------------K~~~~f~~~~~~~~~kl~~~~~v~~---~~~ai~~~~~~~sv~v~dk 127 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSS------------KQRAVFDYRENPKGAKLLDVSCVPK---RPTAISFIREDTSVLVADK 127 (390)
T ss_pred ccccccccCCCceEEEEEeCC------------CceEEEEEecCCCcceeeeEeeccc---CcceeeeeeccceEEEEee
Confidence 445577888889999988632 33333333332 233332222 223333333333 233333
Q ss_pred CCeEE---EEeCC-CCccccCCCCCccccccCeEEEEEECCeEEEEecCCe--EEEEecCCCceEEEcCCCCCCCCCceE
Q 003205 107 DGTVY---RYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR--YFCMADFATMKVCELARPEVEELPHCV 180 (839)
Q Consensus 107 dGtv~---l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~--~~~v~~~~~~~~~~l~~~~~~~~~~~w 180 (839)
-|-++ +|+.. |.. ...+|| ..-|.++.+++|+..++|.+.+ ++ |.+ +|.+ ..++.|
T Consensus 128 agD~~~~di~s~~~~~~-~~~lGh-----vSml~dVavS~D~~~IitaDRDEkIR-vs~--------ypa~---f~Iesf 189 (390)
T KOG3914|consen 128 AGDVYSFDILSADSGRC-EPILGH-----VSMLLDVAVSPDDQFIITADRDEKIR-VSR--------YPAT---FVIESF 189 (390)
T ss_pred cCCceeeeeecccccCc-chhhhh-----hhhhheeeecCCCCEEEEecCCceEE-EEe--------cCcc---cchhhh
Confidence 33333 33333 333 336677 4556777778877777777653 32 221 1110 122333
Q ss_pred EEeCCCCCCCCcEEEEEEeCCeEEEEecCCcccccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccC
Q 003205 181 AVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQKVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESC 256 (839)
Q Consensus 181 ~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~ 256 (839)
+. +|..-|..|++-+|. .|.+++.|+|+++|+-.-++.+.+++.
T Consensus 190 cl-------------------------------GH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 190 CL-------------------------------GHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred cc-------------------------------ccHhheeeeeeccCc-eeeecCCCCcEEEEecccCCcccccch
Confidence 32 344557888888884 688888999999998766777766664
No 263
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.60 E-value=0.14 Score=56.77 Aligned_cols=166 Identities=15% Similarity=0.132 Sum_probs=107.4
Q ss_pred CCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCC-eEEEEeCCCCcc
Q 003205 43 FGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDG-TVYRYNIHAELI 120 (839)
Q Consensus 43 ~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dG-tv~l~~~~G~~~ 120 (839)
+|..||+++ .+...|++..+...-.+. +. +.|....+.-+.+ +|++..|| .+-+|+..|-..
T Consensus 331 ~Gd~ia~VS-------------RGkaFi~~~~~~~~iqv~-~~--~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~ 394 (668)
T COG4946 331 NGDYIALVS-------------RGKAFIMRPWDGYSIQVG-KK--GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV 394 (668)
T ss_pred CCcEEEEEe-------------cCcEEEECCCCCeeEEcC-CC--CceEEEEEccCCcceEEeccCCceEEEEecCCceE
Confidence 588999886 789999999988776665 33 6688888886654 89999999 899999877653
Q ss_pred ccCCCCCccccccCeEEEEEECCeEEEEecCCe--EEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEE
Q 003205 121 EPNASMGKECFEENVVECVFWGNGVVCVTEANR--YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIG 198 (839)
Q Consensus 121 ~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~--~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s 198 (839)
+...+. -..|-.++++++|..++.++.+ +|.++ ++..+++.+...-. .-+. .-.+||++..++.+-
T Consensus 395 kr~e~~-----lg~I~av~vs~dGK~~vvaNdr~el~vid-idngnv~~idkS~~-~lIt-----df~~~~nsr~iAYaf 462 (668)
T COG4946 395 KRIEKD-----LGNIEAVKVSPDGKKVVVANDRFELWVID-IDNGNVRLIDKSEY-GLIT-----DFDWHPNSRWIAYAF 462 (668)
T ss_pred EEeeCC-----ccceEEEEEcCCCcEEEEEcCceEEEEEE-ecCCCeeEeccccc-ceeE-----EEEEcCCceeEEEec
Confidence 333322 3457788999999977776655 45443 55455554432111 1111 223345777777665
Q ss_pred eCC----eEEEEecCCcc----cccCCCceEEEECCCCcEEEEeec
Q 003205 199 TDA----GILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTH 236 (839)
Q Consensus 199 ~d~----tv~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~~~ 236 (839)
-+| .|.+.|..|.. ....+.=.+=||.|+|+++-.++.
T Consensus 463 P~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 463 PEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred CcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 433 67777777643 111222234578888888777664
No 264
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.60 E-value=3 Score=51.20 Aligned_cols=142 Identities=12% Similarity=-0.055 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHcCCcchHHhHHhH----cCCChHHHHHHHHHHHHhCCChhHHHHhhcc---C----CCCCCchHHHHHH
Q 003205 693 SISDTIRTCIVLGNHRAAMKVKTE----FKVSEKRWYWLKVFALATKRDWDALERFSKE---K----RPPIGYRPFVEAC 761 (839)
Q Consensus 693 Sl~~ti~~l~~~~~~k~a~~l~k~----fkvsdkr~~~~kl~ala~~~~w~~L~~f~~~---K----KspIgyepfv~~~ 761 (839)
|.+..|..+.+.|+.+.|.++-++ =-.|+...+...|.++++.|..++-.++..+ + -...-|...|+.+
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 456666666677776665554333 2345666666777777777777765555432 1 1234567777777
Q ss_pred HhcCCHHHHHHhhccCCC---H---HHHHHHHHHcCCHHHHHHHHHhc--------CCHHHHHHHHHHhcCChhHHHHHH
Q 003205 762 VDADEKGEALKYIPKLVD---P---RERAEAYARIGMAKEAADAASQA--------KDGELLGRLKLTFAQNAAASSIFD 827 (839)
Q Consensus 762 ~~~~~~~ea~~yI~~i~d---~---~~r~~~~~~~~~~~~A~~~a~~~--------kd~~~L~~i~~~~~~~~~~~~~i~ 827 (839)
-+.|..++|..++.+++- . ..-+..+.+.|+++.|...+.+. .....|..++.+...- +...
T Consensus 473 ~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~----~~A~ 548 (697)
T PLN03081 473 GREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ----AEAA 548 (697)
T ss_pred HhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCH----HHHH
Confidence 777777777777776641 1 23344555666666665555432 1233555555554332 2344
Q ss_pred HHHHHhhhcCC
Q 003205 828 TLRDRLSFQGV 838 (839)
Q Consensus 828 ~~~~~~~~~~~ 838 (839)
++++++..+|+
T Consensus 549 ~v~~~m~~~g~ 559 (697)
T PLN03081 549 KVVETLKRKGL 559 (697)
T ss_pred HHHHHHHHcCC
Confidence 56666666665
No 265
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.59 E-value=0.039 Score=66.33 Aligned_cols=171 Identities=13% Similarity=0.127 Sum_probs=109.3
Q ss_pred CceEEEEcCCCC-ceeEEEecCCCCCeEEEeecC-CCe-EEEEEeCCeEEEEeCCCC----ccccCCCCCccccccCeEE
Q 003205 65 LRKLRIFNSAGV-LISETVWKNPGGRLIGMSWSE-DQT-LICVVQDGTVYRYNIHAE----LIEPNASMGKECFEENVVE 137 (839)
Q Consensus 65 ~~~I~iy~~~G~-ll~ti~~~~~~~~I~~~~fs~-de~-Lv~v~~dGtv~l~~~~G~----~~~~~~g~~~~~~~~~V~~ 137 (839)
-..|+||+..-+ .+..|+... ..-|.++.=+. .|. ++.+..||.||+||..-- .......|.. ..+|..
T Consensus 1186 ~r~IRIWDa~~E~~~~diP~~s-~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~---~~~Iv~ 1261 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKEQVVADIPYGS-STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHND---VEPIVH 1261 (1387)
T ss_pred eeEEEEEecccceeEeecccCC-CccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCC---ccccee
Confidence 578999998765 455688766 24466665543 334 579999999999985422 2333444522 233888
Q ss_pred EEEECCeEE-EEec--CCeEEEEecCCCceEEEcCCCC----CCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCC
Q 003205 138 CVFWGNGVV-CVTE--ANRYFCMADFATMKVCELARPE----VEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDG 210 (839)
Q Consensus 138 ~~~~~~G~v-~~t~--~~~~~~v~~~~~~~~~~l~~~~----~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~ 210 (839)
+++-.+|.. ++++ +|+++.+ ++..+....+.+.. .|+..++..|-+ ...+++..+. +.|.+|+..|
T Consensus 1262 ~slq~~G~~elvSgs~~G~I~~~-DlR~~~~e~~~~iv~~~~yGs~lTal~VH~-----hapiiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1262 LSLQRQGLGELVSGSQDGDIQLL-DLRMSSKETFLTIVAHWEYGSALTALTVHE-----HAPIIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred EEeecCCCcceeeeccCCeEEEE-ecccCcccccceeeeccccCccceeeeecc-----CCCeeeecCc-ceEEEEecCh
Confidence 999887766 5554 5666544 33321112222211 123355555532 3445555544 8899999998
Q ss_pred cc-----------cccCCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 211 VQ-----------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 211 ~~-----------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
.+ .-..+++..++|.|---++|.++.|.++-|++..
T Consensus 1335 ~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1335 EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 75 1234668999999999899999999999999754
No 266
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.55 E-value=2.4 Score=49.53 Aligned_cols=107 Identities=18% Similarity=0.023 Sum_probs=67.4
Q ss_pred HHHHHHHHhcCCCCCCchhhhhccCchHHHHHHHHHcCCchHHHHHHHHHHhhCChhHHHHHHh--cChhHHHHHHHHH-
Q 003205 519 RKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQ--TRPLACDLFTVYA- 595 (839)
Q Consensus 519 ~~LA~~Ll~~E~~~~~qV~lLl~~~~~~~AL~~Ai~S~D~dLI~~vll~l~~~l~~~~f~~~l~--~~p~a~~~~~~y~- 595 (839)
-.||+.|-+.-+-...--.++.+.|-.+.|...-++-++|..-...-.+|.+=- +-..+-+ +-|....++..|.
T Consensus 842 E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~---~avelaq~~~l~qv~tliak~aa 918 (1189)
T KOG2041|consen 842 EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWG---EAVELAQRFQLPQVQTLIAKQAA 918 (1189)
T ss_pred HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHH---HHHHHHHhccchhHHHHHHHHHH
Confidence 345555555444444444566666778999999999999986555444544321 1111111 1155556666654
Q ss_pred ---HhcCHHHHHHHHHhcCChhHHHHHHHHHHHhcC
Q 003205 596 ---RCYKHEFLKDFFLSTGQLQEVAFLLWKESWELG 628 (839)
Q Consensus 596 ---~~~~~~~L~~~~~~~~~~~e~a~~~l~~~~~~~ 628 (839)
..++...-.+.++..+++.++|.+..+.+-++.
T Consensus 919 qll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~ 954 (1189)
T KOG2041|consen 919 QLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQ 954 (1189)
T ss_pred HHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHh
Confidence 345555556778999999999999988877654
No 267
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.48 E-value=0.54 Score=52.79 Aligned_cols=188 Identities=11% Similarity=0.057 Sum_probs=107.8
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhc---ccCCceEEEEc-CCCCceeEEEecCCCCCeE-EEeecCCCeEE-EEEeC
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYA---ESALRKLRIFN-SAGVLISETVWKNPGGRLI-GMSWSEDQTLI-CVVQD 107 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~---~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~-~~~fs~de~Lv-~v~~d 107 (839)
..+.+.+||+|..+.+...+...-+-.. -..++.+.+|| .+|.++.+++.-..+--.. -+.||-|+.++ =+..+
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~ 152 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS 152 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccC
Confidence 4567889999999999877655221110 12356899999 5778888888765221133 57789888874 33333
Q ss_pred CeEEEEeCCCCccccCCCCCccccccCeEEEEEECC--eEE--EEecC--C-----eEEEEecCCCc-eEEEcCCCCCCC
Q 003205 108 GTVYRYNIHAELIEPNASMGKECFEENVVECVFWGN--GVV--CVTEA--N-----RYFCMADFATM-KVCELARPEVEE 175 (839)
Q Consensus 108 Gtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~--G~v--~~t~~--~-----~~~~v~~~~~~-~~~~l~~~~~~~ 175 (839)
.+++|.+.+++.+..... . ...+|.+-.++|. +-+ ..|-. + +++.+. ..++ ....|.. .++
T Consensus 153 -sl~i~e~t~n~~~~p~~~-l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp-~~s~l~tk~lfk--~~~ 225 (561)
T COG5354 153 -SLYIHEITDNIEEHPFKN-L--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIP-KNSVLVTKNLFK--VSG 225 (561)
T ss_pred -eEEEEecCCccccCchhh-c--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEcc-CCCeeeeeeeEe--ecc
Confidence 488888766664322211 1 1467888888874 333 33311 1 223332 1111 0111111 101
Q ss_pred CCceEEEeCCCCCCCCcEEEEEEe-----------CCeEEEEecCCcc-c---ccCCCceEEEECCCCcEEEEee
Q 003205 176 LPHCVAVIEPKYTMTGSVEVLIGT-----------DAGILMLDEDGVQ-K---VDDTLSQKMAVSPNGNFVACFT 235 (839)
Q Consensus 176 ~~~~w~vi~~~~S~~~~~~v~~s~-----------d~tv~l~~~~~~~-~---~~~~~i~~ia~Spng~~iA~~~ 235 (839)
-.-.|.+ .|+.++.... ++++|+++.++.. + ...+||+..+++|.++..|..+
T Consensus 226 ~qLkW~~-------~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 226 VQLKWQV-------LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred cEEEEec-------CCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEe
Confidence 1223655 5554443321 3578999888765 2 3479999999999997666554
No 268
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.39 E-value=1.1 Score=48.38 Aligned_cols=195 Identities=15% Similarity=0.175 Sum_probs=110.8
Q ss_pred CCceEEEEcCC---CC--ceeEEEecCCCCCeEEEeecCCCeEE--EEEeCCeEEEEeC--CCCccc---c-----CCCC
Q 003205 64 ALRKLRIFNSA---GV--LISETVWKNPGGRLIGMSWSEDQTLI--CVVQDGTVYRYNI--HAELIE---P-----NASM 126 (839)
Q Consensus 64 ~~~~I~iy~~~---G~--ll~ti~~~~~~~~I~~~~fs~de~Lv--~v~~dGtv~l~~~--~G~~~~---~-----~~g~ 126 (839)
.++.|--|.-+ |. +++...... .....++.+++++++ .-..-|.|.+|.+ +|.+.. . .-+|
T Consensus 62 ~~ggvaay~iD~~~G~Lt~ln~~~~~g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~ 139 (346)
T COG2706 62 EEGGVAAYRIDPDDGRLTFLNRQTLPG--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPH 139 (346)
T ss_pred CcCcEEEEEEcCCCCeEEEeeccccCC--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCC
Confidence 35666666544 43 344444433 445899999999853 4445788999954 465521 1 1122
Q ss_pred CccccccC-eEEEEEECCeEEEEecCC---eEEEEecCCCceEEEcCC--CCCCCCCceEEEeCCCCCCCCcEEEEEEe-
Q 003205 127 GKECFEEN-VVECVFWGNGVVCVTEAN---RYFCMADFATMKVCELAR--PEVEELPHCVAVIEPKYTMTGSVEVLIGT- 199 (839)
Q Consensus 127 ~~~~~~~~-V~~~~~~~~G~v~~t~~~---~~~~v~~~~~~~~~~l~~--~~~~~~~~~w~vi~~~~S~~~~~~v~~s~- 199 (839)
+.++.. +..+.+.|+|..+++-+- +++. -++++..+..... ..-+..|++. + |.|+|+..-++..
T Consensus 140 --~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~-y~~~dg~L~~~~~~~v~~G~GPRHi-~----FHpn~k~aY~v~EL 211 (346)
T COG2706 140 --ERQESPHVHSANFTPDGRYLVVPDLGTDRIFL-YDLDDGKLTPADPAEVKPGAGPRHI-V----FHPNGKYAYLVNEL 211 (346)
T ss_pred --ccccCCccceeeeCCCCCEEEEeecCCceEEE-EEcccCccccccccccCCCCCcceE-E----EcCCCcEEEEEecc
Confidence 111222 788999999955555432 3432 2233332222211 1123557765 3 4448888877776
Q ss_pred CCeEEEEecCCcc---------------cccCCCceEEEECCCCcEEEEeecCC-eEEEEecCCCCccccccC--CCCC-
Q 003205 200 DAGILMLDEDGVQ---------------KVDDTLSQKMAVSPNGNFVACFTHDG-RLVVNNTNFSSPVIDESC--ESAL- 260 (839)
Q Consensus 200 d~tv~l~~~~~~~---------------~~~~~~i~~ia~Spng~~iA~~~~~g-~i~i~ssd~~~~l~e~~~--~~~~- 260 (839)
+++|-+|..++.. -....+-..|.+||||+||-..++-. .|+++..|-..-.+++-. .+..
T Consensus 212 ~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~ 291 (346)
T COG2706 212 NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQ 291 (346)
T ss_pred CCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCc
Confidence 9999999777531 02234467999999999998866533 378877653322223321 1122
Q ss_pred CCCceeee
Q 003205 261 PPEQIAWC 268 (839)
Q Consensus 261 ~p~~~~Wc 268 (839)
.|+.+...
T Consensus 292 ~PR~F~i~ 299 (346)
T COG2706 292 FPRDFNIN 299 (346)
T ss_pred CCccceeC
Confidence 37766665
No 269
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=96.37 E-value=0.058 Score=56.19 Aligned_cols=147 Identities=15% Similarity=0.213 Sum_probs=88.9
Q ss_pred CCeEEEeecCCCe-EEEEEeCCeEEEEeCCCCc-ccc--CCCCCccccccCeEEEEEEC--CeEEEEecCC-eEEEEecC
Q 003205 88 GRLIGMSWSEDQT-LICVVQDGTVYRYNIHAEL-IEP--NASMGKECFEENVVECVFWG--NGVVCVTEAN-RYFCMADF 160 (839)
Q Consensus 88 ~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~G~~-~~~--~~g~~~~~~~~~V~~~~~~~--~G~v~~t~~~-~~~~v~~~ 160 (839)
|+|.++.|-||+. |+++. |..|.+|++...- ..- ....+.+ .+......+.+| +|-.++|.+. .++. ++.
T Consensus 124 g~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e-~~~~ftsg~WspHHdgnqv~tt~d~tl~~-~D~ 200 (370)
T KOG1007|consen 124 GKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAE-MRHSFTSGAWSPHHDGNQVATTSDSTLQF-WDL 200 (370)
T ss_pred CceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccc-ccceecccccCCCCccceEEEeCCCcEEE-EEc
Confidence 7999999999987 55555 6678899875321 110 0001111 123344455555 7777776554 4433 332
Q ss_pred CCc-eEEEcCCCCCCCCCceEEEeCCCCCCCCc-EEEEEEeCCeEEEEecCCcc------cccCCCceEEEECCCCc-EE
Q 003205 161 ATM-KVCELARPEVEELPHCVAVIEPKYTMTGS-VEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGN-FV 231 (839)
Q Consensus 161 ~~~-~~~~l~~~~~~~~~~~w~vi~~~~S~~~~-~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~Spng~-~i 231 (839)
.+. .-..+ ...|.=-|.+-+|.|+.+ .+|+.+.||.|.+||..... .+|..+++.+.|.|-.. +|
T Consensus 201 RT~~~~~sI------~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi 274 (370)
T KOG1007|consen 201 RTMKKNNSI------EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI 274 (370)
T ss_pred cchhhhcch------hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence 211 11111 122222356667777877 56777889999999988654 57788899999999885 45
Q ss_pred EEeecCCeEEEE
Q 003205 232 ACFTHDGRLVVN 243 (839)
Q Consensus 232 A~~~~~g~i~i~ 243 (839)
.+++.|-.+.++
T Consensus 275 Ls~~SDs~V~Ls 286 (370)
T KOG1007|consen 275 LSGGSDSAVNLS 286 (370)
T ss_pred EecCCCceeEEE
Confidence 555566655554
No 270
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=96.35 E-value=0.2 Score=56.28 Aligned_cols=263 Identities=11% Similarity=0.148 Sum_probs=128.8
Q ss_pred CCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeC-CCCcc-ccCCCCCccccccCeEEEE
Q 003205 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNI-HAELI-EPNASMGKECFEENVVECV 139 (839)
Q Consensus 64 ~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~-~G~~~-~~~~g~~~~~~~~~V~~~~ 139 (839)
.++.|.|.+. +++.+.+|+... ..-..+.|||||+ +.+.+.||.|.++|+ .++.. +...|. .-..+.
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~--~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-------~~~~i~ 84 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGG--APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-------NPRGIA 84 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-ST--TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-------EEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEcCCC--CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-------CcceEE
Confidence 4678888885 467899998654 3446678999997 567888999999996 55553 333332 235678
Q ss_pred EECCeEEEEecC---CeEEEEecCCCceEEEcCCCCCC---CCCceEEEeCCCCCCCCcEE-EEEEeCCeEEEEecCCcc
Q 003205 140 FWGNGVVCVTEA---NRYFCMADFATMKVCELARPEVE---ELPHCVAVIEPKYTMTGSVE-VLIGTDAGILMLDEDGVQ 212 (839)
Q Consensus 140 ~~~~G~v~~t~~---~~~~~v~~~~~~~~~~l~~~~~~---~~~~~w~vi~~~~S~~~~~~-v~~s~d~tv~l~~~~~~~ 212 (839)
++++|..++.++ +.+..++.-.-.....++..+.. ..++.=.+.. |+.+... +.+-..+.|.+.|.....
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~---s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVA---SPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE----SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEe---cCCCCEEEEEEccCCeEEEEEecccc
Confidence 888887776654 45555543221223333321111 1122223332 2244433 333335778888755432
Q ss_pred -----cc-cCCCceEEEECCCCcEE-EEeecCCeEEEEecCCCCccccccCCCCCCC----------Cceeee----cCc
Q 003205 213 -----KV-DDTLSQKMAVSPNGNFV-ACFTHDGRLVVNNTNFSSPVIDESCESALPP----------EQIAWC----GMD 271 (839)
Q Consensus 213 -----~~-~~~~i~~ia~Spng~~i-A~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p----------~~~~Wc----G~d 271 (839)
.. ....-+...++|+|+++ +.++.+..+-+++..-.......++...-.| ....|. |..
T Consensus 162 ~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 162 NLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF 241 (369)
T ss_dssp CEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred ccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence 11 22345689999999864 5455666787887653333333333211111 123464 222
Q ss_pred eEEEE-------ec-----C--EEEEEcCCCCceEeccCCCeEEee-----cCCceEEEccCcceeeeccchhhH-hhhc
Q 003205 272 SVLLY-------WN-----D--MLVMVAPQAEPVQYFYDEPLVLIP-----ECDGVRILSNSSMEFLQRVPASTE-QIFA 331 (839)
Q Consensus 272 ~vv~~-------~~-----~--~l~lig~~~~~v~f~~~~~~~l~~-----E~DGvRIit~~~~~~l~~Vp~~~~-~vf~ 331 (839)
.+... |+ . ++.+-|+. -.++-.++++-+.+. +-+-|-||..+..+...++..... .+..
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h 320 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVH 320 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEE
T ss_pred ecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEec
Confidence 21111 11 1 23333332 455556666655443 334599999998888877754332 3444
Q ss_pred cCCCChhh
Q 003205 332 IGSTSPAA 339 (839)
Q Consensus 332 igS~~pga 339 (839)
+.++..|.
T Consensus 321 ~ef~~dG~ 328 (369)
T PF02239_consen 321 MEFNPDGK 328 (369)
T ss_dssp EEE-TTSS
T ss_pred cEECCCCC
Confidence 45555543
No 271
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.29 E-value=0.97 Score=55.86 Aligned_cols=94 Identities=15% Similarity=0.138 Sum_probs=79.2
Q ss_pred hHHhHcCCChHHHH-HHHHHHHHhCC--ChhHHHHhhccC---------------CCCCCchHHHHHHHhcCCHHHHHHh
Q 003205 712 KVKTEFKVSEKRWY-WLKVFALATKR--DWDALERFSKEK---------------RPPIGYRPFVEACVDADEKGEALKY 773 (839)
Q Consensus 712 ~l~k~fkvsdkr~~-~~kl~ala~~~--~w~~L~~f~~~K---------------KspIgyepfv~~~~~~~~~~ea~~y 773 (839)
-+..+|+|.+..=- --.|..|++.+ -|++..++++.. +---+|+.|++.|.+....++|.-.
T Consensus 882 ~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~ 961 (1265)
T KOG1920|consen 882 TLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALM 961 (1265)
T ss_pred hhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 45688999987754 44688888888 699999999642 2245788999999999999999888
Q ss_pred hccCCCHHHHHHHHHHcCCHHHHHHHHHhcCC
Q 003205 774 IPKLVDPRERAEAYARIGMAKEAADAASQAKD 805 (839)
Q Consensus 774 I~~i~d~~~r~~~~~~~~~~~~A~~~a~~~kd 805 (839)
-.+|...++-++.|..||+|++|...|.+...
T Consensus 962 Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~ 993 (1265)
T KOG1920|consen 962 YERCGKLEKALKAYKECGDWREALSLAAQLSE 993 (1265)
T ss_pred HHHhccHHHHHHHHHHhccHHHHHHHHHhhcC
Confidence 88888899999999999999999999998775
No 272
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=96.29 E-value=0.07 Score=64.21 Aligned_cols=169 Identities=14% Similarity=0.048 Sum_probs=120.3
Q ss_pred CCceEEEEcCCC-CceeEEEecCC--CCCeEEEeecCCCe-EEEEEeCCeEEEEeCCCCccc-cCCCCCccccccCeEEE
Q 003205 64 ALRKLRIFNSAG-VLISETVWKNP--GGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAELIE-PNASMGKECFEENVVEC 138 (839)
Q Consensus 64 ~~~~I~iy~~~G-~ll~ti~~~~~--~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~G~~~~-~~~g~~~~~~~~~V~~~ 138 (839)
.++.+-||+..+ ..+..+..... .....-+++++++- .++++.-|.+.+|.+.+.-.. ...|| +..|-.+
T Consensus 107 ~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GH-----eG~iF~i 181 (967)
T KOG0974|consen 107 SRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGH-----EGSIFSI 181 (967)
T ss_pred cCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceeccc-----CCceEEE
Confidence 478888888654 45555665441 11345567887775 578999999999988755433 47788 6778888
Q ss_pred EEECCeEEEEecCC-eEEEEecCCCceEEEcCCCCCCCCCceEEE-eCCCCCCCCcEEEEEEeCCeEEEEecCCcc----
Q 003205 139 VFWGNGVVCVTEAN-RYFCMADFATMKVCELARPEVEELPHCVAV-IEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---- 212 (839)
Q Consensus 139 ~~~~~G~v~~t~~~-~~~~v~~~~~~~~~~l~~~~~~~~~~~w~v-i~~~~S~~~~~~v~~s~d~tv~l~~~~~~~---- 212 (839)
.++.+|-.+++.+. +-..+|.+++.. .+.-..++++.+.|++ +.| + .+++++.|-|..+|+.++.+
T Consensus 182 ~~s~dg~~i~s~SdDRsiRlW~i~s~~--~~~~~~fgHsaRvw~~~~~~----n--~i~t~gedctcrvW~~~~~~l~~y 253 (967)
T KOG0974|consen 182 VTSLDGRYIASVSDDRSIRLWPIDSRE--VLGCTGFGHSARVWACCFLP----N--RIITVGEDCTCRVWGVNGTQLEVY 253 (967)
T ss_pred EEccCCcEEEEEecCcceeeeeccccc--ccCcccccccceeEEEEecc----c--eeEEeccceEEEEEecccceehhh
Confidence 88888888888654 345555555322 1112235577888977 443 3 89999999999999888875
Q ss_pred ccc-CCCceEEEECCCCcEEEEeecCCeEEEEec
Q 003205 213 KVD-DTLSQKMAVSPNGNFVACFTHDGRLVVNNT 245 (839)
Q Consensus 213 ~~~-~~~i~~ia~Spng~~iA~~~~~g~i~i~ss 245 (839)
..| .+.+.+++++++.-.+.+...||++++|+-
T Consensus 254 ~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 254 DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred hhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 333 456999999999888888889999998863
No 273
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.27 E-value=0.7 Score=48.54 Aligned_cols=190 Identities=16% Similarity=0.159 Sum_probs=118.2
Q ss_pred CCceEEEEcCCCCceeEEEecCCCCCeEEEeec-CCCeEEEEEeCCeEEEEeCC-CCccccCCC--CCccccccCeEEEE
Q 003205 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWS-EDQTLICVVQDGTVYRYNIH-AELIEPNAS--MGKECFEENVVECV 139 (839)
Q Consensus 64 ~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs-~de~Lv~v~~dGtv~l~~~~-G~~~~~~~g--~~~~~~~~~V~~~~ 139 (839)
..+.|.-|+..+.....+.. ....++.+. +++.|+++..+|. .++++. |+...+.-. .... .....++.
T Consensus 20 ~~~~i~~~~~~~~~~~~~~~----~~~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~~~~~~~~~~~--~~~~ND~~ 92 (246)
T PF08450_consen 20 PGGRIYRVDPDTGEVEVIDL----PGPNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTVLADLPDGGVP--FNRPNDVA 92 (246)
T ss_dssp TTTEEEEEETTTTEEEEEES----SSEEEEEEECTTSEEEEEETTCE-EEEETTTTEEEEEEEEETTCSC--TEEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEec----CCCceEEEEccCCEEEEEEcCce-EEEecCCCcEEEEeeccCCCcc--cCCCceEE
Confidence 46889999998887776553 237888888 7888888887774 556854 544222111 1001 45677889
Q ss_pred EECCeEEEEecC----------CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEE-eCCeEEEEec
Q 003205 140 FWGNGVVCVTEA----------NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIG-TDAGILMLDE 208 (839)
Q Consensus 140 ~~~~G~v~~t~~----------~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s-~d~tv~l~~~ 208 (839)
+-++|-+.+|.. +.+|.+..- .....+.+ .+ ..|... .|||+|+.+.... ..+.|+.++.
T Consensus 93 vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~-~~-~~pNGi-----~~s~dg~~lyv~ds~~~~i~~~~~ 163 (246)
T PF08450_consen 93 VDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVAD-GL-GFPNGI-----AFSPDGKTLYVADSFNGRIWRFDL 163 (246)
T ss_dssp E-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEE-EE-SSEEEE-----EEETTSSEEEEEETTTTEEEEEEE
T ss_pred EcCCCCEEEEecCCCccccccccceEEECCC--CeEEEEec-Cc-ccccce-----EECCcchheeecccccceeEEEec
Confidence 999998888854 346766643 22222221 11 223333 2455888776554 4788888876
Q ss_pred C--Ccc--------cccC--CCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCc
Q 003205 209 D--GVQ--------KVDD--TLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMD 271 (839)
Q Consensus 209 ~--~~~--------~~~~--~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d 271 (839)
+ +.. .... +..-.|++..+|++.+.....+.|++++.+ ++.+.++.... ..|..++|-|.|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~-~~~t~~~fgg~~ 236 (246)
T PF08450_consen 164 DADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV-PRPTNCAFGGPD 236 (246)
T ss_dssp ETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS-SSEEEEEEESTT
T ss_pred cccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC-CCEEEEEEECCC
Confidence 4 321 1122 236789999999987776678899999998 88777666552 267777776554
No 274
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.23 E-value=1.1 Score=50.01 Aligned_cols=194 Identities=17% Similarity=0.245 Sum_probs=107.3
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC---CC--ceeEEEecCCCCCeEEEeecCCCeEEEEE--eCCe
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA---GV--LISETVWKNPGGRLIGMSWSEDQTLICVV--QDGT 109 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~---G~--ll~ti~~~~~~~~I~~~~fs~de~Lv~v~--~dGt 109 (839)
.++++|+|+.+=+..... ...+.|..|.-+ |+ ++.++.-.. .....+..+|++..+.+. .+|+
T Consensus 41 ~l~~~~~~~~LY~~~e~~--------~~~g~v~~~~i~~~~g~L~~~~~~~~~g--~~p~~i~~~~~g~~l~vany~~g~ 110 (345)
T PF10282_consen 41 WLAVSPDGRRLYVVNEGS--------GDSGGVSSYRIDPDTGTLTLLNSVPSGG--SSPCHIAVDPDGRFLYVANYGGGS 110 (345)
T ss_dssp CEEE-TTSSEEEEEETTS--------STTTEEEEEEEETTTTEEEEEEEEEESS--SCEEEEEECTTSSEEEEEETTTTE
T ss_pred eEEEEeCCCEEEEEEccc--------cCCCCEEEEEECCCcceeEEeeeeccCC--CCcEEEEEecCCCEEEEEEccCCe
Confidence 455666666655554210 146778887754 43 566666544 678899999999864443 5999
Q ss_pred EEEEeC--CCCcccc--CC-----CCCccc-cccCeEEEEEECCeEEEEec---CCeEE--EEecCCCceEEEcC--CCC
Q 003205 110 VYRYNI--HAELIEP--NA-----SMGKEC-FEENVVECVFWGNGVVCVTE---ANRYF--CMADFATMKVCELA--RPE 172 (839)
Q Consensus 110 v~l~~~--~G~~~~~--~~-----g~~~~~-~~~~V~~~~~~~~G~v~~t~---~~~~~--~v~~~~~~~~~~l~--~~~ 172 (839)
|.+|++ .|.+... .. +...+. -......+.+.|+|..++.. ...++ .++.- ...+.... ..+
T Consensus 111 v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~-~~~l~~~~~~~~~ 189 (345)
T PF10282_consen 111 VSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDD-TGKLTPVDSIKVP 189 (345)
T ss_dssp EEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TT-S-TEEEEEEEECS
T ss_pred EEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCC-CceEEEeeccccc
Confidence 999975 3665221 11 000000 03446788999987655443 22343 33321 11121111 122
Q ss_pred CCCCCceEEEeCCCCCCCCcEEEEEEe-CCeEEEEecC---Ccc-------cc---c--CCCceEEEECCCCcEEEEeec
Q 003205 173 VEELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDED---GVQ-------KV---D--DTLSQKMAVSPNGNFVACFTH 236 (839)
Q Consensus 173 ~~~~~~~w~vi~~~~S~~~~~~v~~s~-d~tv~l~~~~---~~~-------~~---~--~~~i~~ia~Spng~~iA~~~~ 236 (839)
.+..|++.. + +|+|+....+.. +++|.+++.+ +.. .. . ...-..|++||||++|-..+.
T Consensus 190 ~G~GPRh~~-f----~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr 264 (345)
T PF10282_consen 190 PGSGPRHLA-F----SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR 264 (345)
T ss_dssp TTSSEEEEE-E-----TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC
T ss_pred cCCCCcEEE-E----cCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec
Confidence 345677653 3 348887766655 7888887766 211 01 1 113578999999999877664
Q ss_pred -CCeEEEEecC
Q 003205 237 -DGRLVVNNTN 246 (839)
Q Consensus 237 -~g~i~i~ssd 246 (839)
.++|.+++.|
T Consensus 265 ~~~sI~vf~~d 275 (345)
T PF10282_consen 265 GSNSISVFDLD 275 (345)
T ss_dssp TTTEEEEEEEC
T ss_pred cCCEEEEEEEe
Confidence 3468887764
No 275
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.0048 Score=68.50 Aligned_cols=169 Identities=12% Similarity=0.137 Sum_probs=103.3
Q ss_pred EEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeCC--CCcc-----ccCC-CCCccccccCeEEEEE
Q 003205 70 IFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIH--AELI-----EPNA-SMGKECFEENVVECVF 140 (839)
Q Consensus 70 iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~--G~~~-----~~~~-g~~~~~~~~~V~~~~~ 140 (839)
-++.+--.+.++.+|+ ..|..+.=-.+|. +++++.|.||++|++. |.-. ++.+ .| ...|.++-|
T Consensus 720 ~ln~~~irL~nf~GH~--~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aH-----kk~i~~igf 792 (1034)
T KOG4190|consen 720 NLNFDHIRLCNFTGHQ--EKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAH-----KKPIHDIGF 792 (1034)
T ss_pred ccccceeeeecccCcH--HHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhc-----cCcccceee
Confidence 3444444556667777 7777777666776 7999999999999754 3322 2222 23 345666666
Q ss_pred ECCeEEEEecCCeEEEEecCCCceEEEcCC---CC-CCCCCceEEEeCCCCCCCCcEEE-EEEeCCeEEEEecCCcc---
Q 003205 141 WGNGVVCVTEANRYFCMADFATMKVCELAR---PE-VEELPHCVAVIEPKYTMTGSVEV-LIGTDAGILMLDEDGVQ--- 212 (839)
Q Consensus 141 ~~~G~v~~t~~~~~~~v~~~~~~~~~~l~~---~~-~~~~~~~w~vi~~~~S~~~~~~v-~~s~d~tv~l~~~~~~~--- 212 (839)
-.+--.+++-++-+..++-+- .+.|+. .+ .+......++ +. .++..++ ..+...||+++|...+.
T Consensus 793 L~~lr~i~ScD~giHlWDPFi---gr~Laq~~dapk~~a~~~ikcl-~n---v~~~iliAgcsaeSTVKl~DaRsce~~~ 865 (1034)
T KOG4190|consen 793 LADLRSIASCDGGIHLWDPFI---GRLLAQMEDAPKEGAGGNIKCL-EN---VDRHILIAGCSAESTVKLFDARSCEWTC 865 (1034)
T ss_pred eeccceeeeccCcceeecccc---cchhHhhhcCcccCCCceeEec-cc---Ccchheeeeccchhhheeeeccccccee
Confidence 655545666666555444432 222321 11 1111111222 21 1333222 22458899999988764
Q ss_pred -------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccc
Q 003205 213 -------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVI 252 (839)
Q Consensus 213 -------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~ 252 (839)
.+.++-+..|++-|.|+.+|.+-.+|.|-+.+..-+.++.
T Consensus 866 E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vIN 912 (1034)
T KOG4190|consen 866 ELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVIN 912 (1034)
T ss_pred eEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceec
Confidence 2344558899999999999999999999998876666664
No 276
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.22 Score=54.02 Aligned_cols=177 Identities=8% Similarity=0.090 Sum_probs=103.5
Q ss_pred CceEEEEcCC-----CCceeEEEecCCCCCeEEEeecCCCe-EE-EEEeC--CeEEEEeCCCCccccCCCCCccccccCe
Q 003205 65 LRKLRIFNSA-----GVLISETVWKNPGGRLIGMSWSEDQT-LI-CVVQD--GTVYRYNIHAELIEPNASMGKECFEENV 135 (839)
Q Consensus 65 ~~~I~iy~~~-----G~ll~ti~~~~~~~~I~~~~fs~de~-Lv-~v~~d--Gtv~l~~~~G~~~~~~~g~~~~~~~~~V 135 (839)
++.+++|+-. -.++..+ .. ...+..|.=++... ++ ++... .-+.+|++.+- .+.+.+..+.. +.-=
T Consensus 124 sG~l~~~~~k~~d~hss~l~~l--a~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpn-D~L~ 198 (412)
T KOG3881|consen 124 SGNLQVRHDKSGDLHSSKLIKL--AT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWSAKNVPN-DRLG 198 (412)
T ss_pred CCcEEEEeccCCccccccceee--ec-CCceeeeccCCCCCceEecCchhcccceeeeecccc-eeeeeccCCCC-cccc
Confidence 5666666643 2222222 22 24677888887554 43 45555 56899987655 33333222110 1111
Q ss_pred EEEEEECCeEEEEec--CCeEEEEecCCC-------ceEEEcCCCCCC-CCCceEEEeCCCCCCCCcEEEEEEeCCeEEE
Q 003205 136 VECVFWGNGVVCVTE--ANRYFCMADFAT-------MKVCELARPEVE-ELPHCVAVIEPKYTMTGSVEVLIGTDAGILM 205 (839)
Q Consensus 136 ~~~~~~~~G~v~~t~--~~~~~~v~~~~~-------~~~~~l~~~~~~-~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l 205 (839)
+.+-+|+.++.++.. .++|........ +.-+++....+. +..++... .|+|+++.....-+.+..
T Consensus 199 LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l-----~p~gn~Iy~gn~~g~l~~ 273 (412)
T KOG3881|consen 199 LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGL-----TPSGNFIYTGNTKGQLAK 273 (412)
T ss_pred ceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeee-----cCCCcEEEEecccchhhe
Confidence 235557666666665 344433332211 111122221221 22344333 238999888888899999
Q ss_pred EecCCcc------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcc
Q 003205 206 LDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPV 251 (839)
Q Consensus 206 ~~~~~~~------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l 251 (839)
+|..+.. .+-.|.+..|-..|+++++|+.+-|..++|.+.+-...+
T Consensus 274 FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred ecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 9988653 456788999999999999999999999999987743333
No 277
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.17 E-value=0.22 Score=57.68 Aligned_cols=244 Identities=16% Similarity=0.197 Sum_probs=127.6
Q ss_pred EcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeEEEEeCCCC
Q 003205 40 CAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNIHAE 118 (839)
Q Consensus 40 ~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv~l~~~~G~ 118 (839)
...+|.-|+++- .|+.|-+=+-+|+.|+.=.... .....+-||+|.++ +....+|.+.+|+.+|+
T Consensus 123 Wn~dG~kIcIvY------------eDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgn 188 (1189)
T KOG2041|consen 123 WNLDGTKICIVY------------EDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGN 188 (1189)
T ss_pred EcCCCcEEEEEE------------ccCCEEEEeeccceecchhcch--heccceeecccHHHHHhhhcCCcEEEeccccc
Confidence 345666666665 3566656666666655433332 34567789998774 68889999999999999
Q ss_pred cccc-CCCCCcc------ccccCeEEEEEECCeE-----------EEEecCCeEEEEecCCCceEEEcCCCCCCCCCceE
Q 003205 119 LIEP-NASMGKE------CFEENVVECVFWGNGV-----------VCVTEANRYFCMADFATMKVCELARPEVEELPHCV 180 (839)
Q Consensus 119 ~~~~-~~g~~~~------~~~~~V~~~~~~~~G~-----------v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w 180 (839)
|... ...-++. .+...|-.+. |.+|- ++.-.+|+.-.+.+.++|.+..+. ..+
T Consensus 189 F~~Kl~~~c~Vn~tg~~s~~~~kia~i~-w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d--------tgm 259 (1189)
T KOG2041|consen 189 FERKLEKDCEVNGTGIFSNFPTKIAEIE-WNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD--------TGM 259 (1189)
T ss_pred HHHhhhhceEEeeeeeecCCCcccccee-eccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe--------ccc
Confidence 8332 2111110 0011111111 33332 222233333333333333332221 124
Q ss_pred EEeCCCCCCCCcEEEEEEeCC---------eEEEEecCCcc----cccCCCceEEEECCCCcEEEEeecCCeEEEEec--
Q 003205 181 AVIEPKYTMTGSVEVLIGTDA---------GILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNT-- 245 (839)
Q Consensus 181 ~vi~~~~S~~~~~~v~~s~d~---------tv~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ss-- 245 (839)
.++...++++|.+++..+.+. .|..++.-|.. +....-|++++.--.|-.||++- |+.|++.+.
T Consensus 260 ~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyfanIRP 338 (1189)
T KOG2041|consen 260 KIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYFANIRP 338 (1189)
T ss_pred EeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEEe-cceEEEEeecc
Confidence 566667888999998887532 23333444432 34455577777777777777765 344433321
Q ss_pred CCC-----C--------------ccccccCCC-C------CCCCceeeecCceEEEEecC-----------------EEE
Q 003205 246 NFS-----S--------------PVIDESCES-A------LPPEQIAWCGMDSVLLYWND-----------------MLV 282 (839)
Q Consensus 246 d~~-----~--------------~l~e~~~~~-~------~~p~~~~WcG~d~vv~~~~~-----------------~l~ 282 (839)
+|. + .+.-+|+.+ + .....|+.|++.||+..-.+ .+.
T Consensus 339 ~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~ 418 (1189)
T KOG2041|consen 339 EYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQ 418 (1189)
T ss_pred cceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcchhhhhcccceEEEe
Confidence 111 0 011112111 0 12248899999998875422 245
Q ss_pred EEcCCCCceEeccCCCeEEeecCCc
Q 003205 283 MVAPQAEPVQYFYDEPLVLIPECDG 307 (839)
Q Consensus 283 lig~~~~~v~f~~~~~~~l~~E~DG 307 (839)
|-..-|.++.+-|....=.+.-+.|
T Consensus 419 LCNSIGT~lD~kytdirP~Fv~vn~ 443 (1189)
T KOG2041|consen 419 LCNSIGTSLDYKYTDIRPKFVCVNG 443 (1189)
T ss_pred eecccCCcCCCCcceeeeeEEEecc
Confidence 6666677888877654333444454
No 278
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.17 E-value=0.56 Score=49.27 Aligned_cols=188 Identities=19% Similarity=0.233 Sum_probs=104.5
Q ss_pred EEeecC-CCeEEEEE-eCCeEEEEeCCCCcccc-CCCCCccccccCeEEEEEE-CCeEEEEecCCeEEEEecCCCceEEE
Q 003205 92 GMSWSE-DQTLICVV-QDGTVYRYNIHAELIEP-NASMGKECFEENVVECVFW-GNGVVCVTEANRYFCMADFATMKVCE 167 (839)
Q Consensus 92 ~~~fs~-de~Lv~v~-~dGtv~l~~~~G~~~~~-~~g~~~~~~~~~V~~~~~~-~~G~v~~t~~~~~~~v~~~~~~~~~~ 167 (839)
+..|.+ ++.|..+. .+|.|..|+..+...+. ..+ ....+.+. ++|.++++..+.+..+ +..+.....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~--------~~~G~~~~~~~g~l~v~~~~~~~~~-d~~~g~~~~ 74 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLP--------GPNGMAFDRPDGRLYVADSGGIAVV-DPDTGKVTV 74 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESS--------SEEEEEEECTTSEEEEEETTCEEEE-ETTTTEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecC--------CCceEEEEccCCEEEEEEcCceEEE-ecCCCcEEE
Confidence 467887 77776555 58889999887665432 222 14566777 6888888887776666 555555555
Q ss_pred cCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeC--------CeEEEEecCCcc---cccCCCceEEEECCCCcEEE-Eee
Q 003205 168 LARPEVEELPHCVAVIEPKYTMTGSVEVLIGTD--------AGILMLDEDGVQ---KVDDTLSQKMAVSPNGNFVA-CFT 235 (839)
Q Consensus 168 l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d--------~tv~l~~~~~~~---~~~~~~i~~ia~Spng~~iA-~~~ 235 (839)
+.+...+..+. -....-.++++|..-+.-... +.|+.++.++.. ......-+.|++||+|+.+- .-+
T Consensus 75 ~~~~~~~~~~~-~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 75 LADLPDGGVPF-NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEEEETTCSCT-EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEET
T ss_pred EeeccCCCccc-CCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeeccc
Confidence 54321111011 111222334488855554432 568999988543 12233357999999998664 445
Q ss_pred cCCeEEEEecCCCCc-ccc---c-cCCC-CCCCCceeeecCceEEE-Ee-cCEEEEEcCCCC
Q 003205 236 HDGRLVVNNTNFSSP-VID---E-SCES-ALPPEQIAWCGMDSVLL-YW-NDMLVMVAPQAE 289 (839)
Q Consensus 236 ~~g~i~i~ssd~~~~-l~e---~-~~~~-~~~p~~~~WcG~d~vv~-~~-~~~l~lig~~~~ 289 (839)
..+.|+.+..+-... +.. + +... ...|..|+.-.+..+.+ .| +..|..+.|.|.
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~ 215 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGK 215 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSC
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCcc
Confidence 567788877552222 211 1 1111 12366777655444433 23 346666666665
No 279
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=96.16 E-value=0.039 Score=62.25 Aligned_cols=164 Identities=14% Similarity=0.143 Sum_probs=97.7
Q ss_pred EEEEc-CCCCceeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeEEEEeCC-----CCc-cccC---CCCCccccccCeE
Q 003205 68 LRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNIH-----AEL-IEPN---ASMGKECFEENVV 136 (839)
Q Consensus 68 I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv~l~~~~-----G~~-~~~~---~g~~~~~~~~~V~ 136 (839)
|.=+| -.|..|+.+.-.. +.+..++-++.-.| +|++.||+|-.||+. |.+ ...+ .+.... -..|.
T Consensus 157 vYRlNLEqGrfL~P~~~~~--~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~--~~svT 232 (703)
T KOG2321|consen 157 VYRLNLEQGRFLNPFETDS--GELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDA--APSVT 232 (703)
T ss_pred eEEEEcccccccccccccc--ccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccc--cCcce
Confidence 33344 4788888888877 88999999986665 688889999999864 333 1111 111001 23488
Q ss_pred EEEEECCeEEEEec--CCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe-CCeEEEEecCCc-c
Q 003205 137 ECVFWGNGVVCVTE--ANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDEDGV-Q 212 (839)
Q Consensus 137 ~~~~~~~G~v~~t~--~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~-d~tv~l~~~~~~-~ 212 (839)
.++|.++|+-+..+ +|.++. .++....+....+.+...++.....++ .++.-.+++. ...+++|+.... .
T Consensus 233 al~F~d~gL~~aVGts~G~v~i-yDLRa~~pl~~kdh~~e~pi~~l~~~~-----~~~q~~v~S~Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 233 ALKFRDDGLHVAVGTSTGSVLI-YDLRASKPLLVKDHGYELPIKKLDWQD-----TDQQNKVVSMDKRILKIWDECTGKP 306 (703)
T ss_pred EEEecCCceeEEeeccCCcEEE-EEcccCCceeecccCCccceeeecccc-----cCCCceEEecchHHhhhcccccCCc
Confidence 89999999887654 566553 334433344444433211222111122 2333334444 456788987643 3
Q ss_pred ---cccCCCceEEEECCCCcEEEEeecCCeEE
Q 003205 213 ---KVDDTLSQKMAVSPNGNFVACFTHDGRLV 241 (839)
Q Consensus 213 ---~~~~~~i~~ia~Spng~~iA~~~~~g~i~ 241 (839)
.....++..+++=|++-.+-++++++.+.
T Consensus 307 ~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~ 338 (703)
T KOG2321|consen 307 MASIEPTSDLNDFCFVPGSGMFFTANESSKMH 338 (703)
T ss_pred eeeccccCCcCceeeecCCceEEEecCCCcce
Confidence 33445588888888888877777765543
No 280
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.14 E-value=0.8 Score=51.50 Aligned_cols=253 Identities=10% Similarity=0.085 Sum_probs=128.5
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCe-
Q 003205 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGT- 109 (839)
Q Consensus 33 l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGt- 109 (839)
.....+..||.|..+|..+ ..-|.+|.. ++-.+..+.. ..|..++|||+|. |++=+..+.
T Consensus 33 ~p~~~~~~SP~G~~l~~~~-------------~~~V~~~~g~~~~~l~~~~~----~~V~~~~fSP~~kYL~tw~~~pi~ 95 (561)
T COG5354 33 WPVAYVSESPLGTYLFSEH-------------AAGVECWGGPSKAKLVRFRH----PDVKYLDFSPNEKYLVTWSREPII 95 (561)
T ss_pred cchhheeecCcchheehhh-------------ccceEEccccchhheeeeec----CCceecccCcccceeeeeccCCcc
Confidence 3455788999999999886 455888873 4444444432 5789999999998 566555444
Q ss_pred --------------EEEEeCCCCccccCCCCCccccccCeE-EEEEE--C-CeEEEEecCCeEEEE-ecCCCceEEEcCC
Q 003205 110 --------------VYRYNIHAELIEPNASMGKECFEENVV-ECVFW--G-NGVVCVTEANRYFCM-ADFATMKVCELAR 170 (839)
Q Consensus 110 --------------v~l~~~~G~~~~~~~g~~~~~~~~~V~-~~~~~--~-~G~v~~t~~~~~~~v-~~~~~~~~~~l~~ 170 (839)
+.+||.-+..+-++...... ..-.+ -.+++ + .+.-+++.+-.++.+ .|++ ..+-
T Consensus 96 ~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q--~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~-----~~p~ 168 (561)
T COG5354 96 EPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQ--PYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIE-----EHPF 168 (561)
T ss_pred ChhhccCCccccCceeEEeccCceeEeeccccCC--cccccceeeeeecchhhhhhccCeEEEEecCCccc-----cCch
Confidence 66676554443333322111 10011 12322 1 122222223333332 1222 1110
Q ss_pred CCCC-CCCceEEEeCCCCCCCCcEEEEEEe-----CCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCe
Q 003205 171 PEVE-ELPHCVAVIEPKYTMTGSVEVLIGT-----DAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGR 239 (839)
Q Consensus 171 ~~~~-~~~~~w~vi~~~~S~~~~~~v~~s~-----d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~ 239 (839)
..+. ....... ++|.- ++..+++... ..++.+|...... ..-.-.=.++...++|+++++.....+
T Consensus 169 ~~lr~~gi~dFs-isP~~--n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ 245 (561)
T COG5354 169 KNLRPVGILDFS-ISPEG--NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHT 245 (561)
T ss_pred hhccccceeeEE-ecCCC--CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEee
Confidence 0010 1111111 22210 1222233321 3345555444221 111111246777889999888776543
Q ss_pred -----------EEEEecCCCCccccccCCCCCCCCceee--ecCceEEEE---------ec--CEEEEEcCCCC--ceEe
Q 003205 240 -----------LVVNNTNFSSPVIDESCESALPPEQIAW--CGMDSVLLY---------WN--DMLVMVAPQAE--PVQY 293 (839)
Q Consensus 240 -----------i~i~ssd~~~~l~e~~~~~~~~p~~~~W--cG~d~vv~~---------~~--~~l~lig~~~~--~v~f 293 (839)
+++++.. .+.+ ....+..+++.++.| -++.-.+++ ++ .-|..++|.+. ++.|
T Consensus 246 ksnKsyfgesnLyl~~~~-e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~f 323 (561)
T COG5354 246 KSNKSYFGESNLYLLRIT-ERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFF 323 (561)
T ss_pred ecccceeccceEEEEeec-cccc-ceeccccccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccc
Confidence 4444322 1111 111122457789999 455544444 22 14788888875 7778
Q ss_pred ccCCCeEEeecCC---c-eEEEccC
Q 003205 294 FYDEPLVLIPECD---G-VRILSNS 314 (839)
Q Consensus 294 ~~~~~~~l~~E~D---G-vRIit~~ 314 (839)
++.+..+|+.+.| | +-|++.-
T Consensus 324 sp~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 324 SPHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred cCcccEEEEecCCccccceEEeccC
Confidence 8888889999988 5 7777775
No 281
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=96.10 E-value=0.048 Score=64.00 Aligned_cols=89 Identities=11% Similarity=0.078 Sum_probs=71.5
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeEEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYR 112 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv~l 112 (839)
.|.+++-..|-.|-..+ .+..++||+. +|..++++++|. +.|.+++-+.+..+ +.++.|-.|++
T Consensus 193 Vyca~fDrtg~~Iitgs------------dd~lvKiwS~et~~~lAs~rGhs--~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 193 VYCAIFDRTGRYIITGS------------DDRLVKIWSMETARCLASCRGHS--GDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred eeeeeeccccceEeecC------------ccceeeeeeccchhhhccCCCCc--cccchhccchhhhhhhhcccCceEEE
Confidence 45566666666666655 4899999995 788999999999 99999999987775 68899999999
Q ss_pred Ee-CCCCccccCCCCCccccccCeEEEEEEC
Q 003205 113 YN-IHAELIEPNASMGKECFEENVVECVFWG 142 (839)
Q Consensus 113 ~~-~~G~~~~~~~g~~~~~~~~~V~~~~~~~ 142 (839)
|. .+|.......|| +..|..+.|+|
T Consensus 259 Wrl~~~~pvsvLrgh-----tgavtaiafsP 284 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGH-----TGAVTAIAFSP 284 (1113)
T ss_pred EecCCCchHHHHhcc-----ccceeeeccCc
Confidence 97 578878888899 66677666655
No 282
>PLN03077 Protein ECB2; Provisional
Probab=96.10 E-value=6.2 Score=49.67 Aligned_cols=111 Identities=13% Similarity=0.073 Sum_probs=84.5
Q ss_pred HHHHHHHHHcCCcchHHhHHhHcCCChHHHHHHHHHHHHhCCChhHHHHhhcc------CCCCCCchHHHHHHHhcCCHH
Q 003205 695 SDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKE------KRPPIGYRPFVEACVDADEKG 768 (839)
Q Consensus 695 ~~ti~~l~~~~~~k~a~~l~k~fkvsdkr~~~~kl~ala~~~~w~~L~~f~~~------KKspIgyepfv~~~~~~~~~~ 768 (839)
+..|..+.+.|+.+.|.++-++..-++.--|-..|.++++.+++++-..+.+. +-...-|-..+.+|.+.|..+
T Consensus 327 n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~ 406 (857)
T PLN03077 327 NSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406 (857)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHH
Confidence 55566677788888999998888888888899999999999999887666642 234566777888888888888
Q ss_pred HHHHhhccCC------C---HHHHHHHHHHcCCHHHHHHHHHhcCC
Q 003205 769 EALKYIPKLV------D---PRERAEAYARIGMAKEAADAASQAKD 805 (839)
Q Consensus 769 ea~~yI~~i~------d---~~~r~~~~~~~~~~~~A~~~a~~~kd 805 (839)
+|......+. + ...-+++|.++|++.+|.++..+.++
T Consensus 407 ~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 8876655432 1 14557889999999999888776654
No 283
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.09 E-value=2.1 Score=48.01 Aligned_cols=246 Identities=14% Similarity=0.152 Sum_probs=118.1
Q ss_pred CCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeC-CCCcc-ccCCCCCccccccCeEEEEE
Q 003205 64 ALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNI-HAELI-EPNASMGKECFEENVVECVF 140 (839)
Q Consensus 64 ~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~-~G~~~-~~~~g~~~~~~~~~V~~~~~ 140 (839)
.++.+.-|+ .+|+++++..... .-.-...- .++.+++.+.||.+..+|. .|+.. ++..+. .+...-+
T Consensus 73 ~~g~v~a~d~~tG~~~W~~~~~~--~~~~~p~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-------~~~~~p~ 142 (377)
T TIGR03300 73 ADGTVVALDAETGKRLWRVDLDE--RLSGGVGA-DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-------EVLSPPL 142 (377)
T ss_pred CCCeEEEEEccCCcEeeeecCCC--CcccceEE-cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-------eeecCCE
Confidence 467899999 6899998877654 21111111 2566778888999999986 78873 222222 1221111
Q ss_pred ECCeEEEE-ecCCeEEEEecCCCceEEEcCCCCCCCCCceE-E-EeCCCCCCCCcEEEEEEeCCeEEEEecC-Ccc--c-
Q 003205 141 WGNGVVCV-TEANRYFCMADFATMKVCELARPEVEELPHCV-A-VIEPKYTMTGSVEVLIGTDAGILMLDED-GVQ--K- 213 (839)
Q Consensus 141 ~~~G~v~~-t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w-~-vi~~~~S~~~~~~v~~s~d~tv~l~~~~-~~~--~- 213 (839)
..+|.+++ +.++.++.++.-.+...+.+... .+... . ..+|.. .+..++....++.++.+|.. |.. .
T Consensus 143 v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~----~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 143 VANGLVVVRTNDGRLTALDAATGERLWTYSRV----TPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred EECCEEEEECCCCeEEEEEcCCCceeeEEccC----CCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 22444444 45667776664333333443221 11100 0 001111 12344444456788888753 432 1
Q ss_pred -c--cC--C---CceEEEECC--CCcEEEEeecCCeEEEEecCCCCccccccCCCCCCC----CceeeecCceEEEEecC
Q 003205 214 -V--DD--T---LSQKMAVSP--NGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPP----EQIAWCGMDSVLLYWND 279 (839)
Q Consensus 214 -~--~~--~---~i~~ia~Sp--ng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p----~~~~WcG~d~vv~~~~~ 279 (839)
. .. . +...+.-+| .+..+-+.+.+|.+..++..-++.+-+.+......| ..+.-+..|..+..++.
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~ 296 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDR 296 (377)
T ss_pred ccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEEC
Confidence 0 00 0 011111122 234555566677777777654555443332221222 12222333444443331
Q ss_pred ---EEEEEc--CCCC-ceEeccCCCeEEeecCCc-eEEEccCcceeeeccchh
Q 003205 280 ---MLVMVA--PQAE-PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPAS 325 (839)
Q Consensus 280 ---~l~lig--~~~~-~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~ 325 (839)
++..-- ..+. .......+..+++.+.|| +.+++.+..+++.+.+-.
T Consensus 297 ~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~ 349 (377)
T TIGR03300 297 RSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTD 349 (377)
T ss_pred CCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence 111100 0000 000001234556677888 999999889999887643
No 284
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=96.03 E-value=0.23 Score=52.70 Aligned_cols=187 Identities=12% Similarity=0.079 Sum_probs=118.5
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CC-CceeEEEecCCCCCeEEEeecCCCeE-EEEEeCC
Q 003205 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AG-VLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDG 108 (839)
Q Consensus 32 ~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G-~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dG 108 (839)
|.....|..+|.+.-|.... .|..-.+|+. +| +--.++..-..+....++.|+|.|.. ++.+.-.
T Consensus 55 d~~vtgvdWap~snrIvtcs------------~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar 122 (361)
T KOG1523|consen 55 DKIVTGVDWAPKSNRIVTCS------------HDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGAR 122 (361)
T ss_pred CcceeEEeecCCCCceeEcc------------CCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCcc
Confidence 55666777788777776664 4677888886 44 44444333222367899999999985 6777777
Q ss_pred eEEEEeCCCCc---cccCCCCCccccccCeEEEEEECCeEEEEecCCe----E--EEEecCCC-ceEEEcC-CCCCC---
Q 003205 109 TVYRYNIHAEL---IEPNASMGKECFEENVVECVFWGNGVVCVTEANR----Y--FCMADFAT-MKVCELA-RPEVE--- 174 (839)
Q Consensus 109 tv~l~~~~G~~---~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~----~--~~v~~~~~-~~~~~l~-~~~~~--- 174 (839)
.|-+|-+.++- ....++ +++...|.++...+|++.+++++-+ + .+|..+++ |.+..-. ..+++
T Consensus 123 ~isVcy~E~ENdWWVsKhik---kPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm 199 (361)
T KOG1523|consen 123 LISVCYYEQENDWWVSKHIK---KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLM 199 (361)
T ss_pred EEEEEEEecccceehhhhhC---CccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHH
Confidence 88888776663 222222 2336778888888899998887632 2 24555553 2111110 01111
Q ss_pred ---CCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc------cccCCCceEEEECCCCcEEEEe
Q 003205 175 ---ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACF 234 (839)
Q Consensus 175 ---~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~Spng~~iA~~ 234 (839)
.....| +....|||+|..++.++.|+++.+-|..+-. ...+-|..++.+=.....+|.+
T Consensus 200 ~E~~~~ggw-vh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag 267 (361)
T KOG1523|consen 200 SEASSSGGW-VHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAG 267 (361)
T ss_pred HhhccCCCc-eeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecC
Confidence 122346 4445789999999999999999999988653 2344677777665554455543
No 285
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=95.99 E-value=0.26 Score=56.41 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=51.3
Q ss_pred CCCCCCcEEEEEEeCCeEEEEecCCcc-cc--cCCCceEEEECCCCcEEEEeecCCeEEEEecCCCC
Q 003205 186 KYTMTGSVEVLIGTDAGILMLDEDGVQ-KV--DDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSS 249 (839)
Q Consensus 186 ~~S~~~~~~v~~s~d~tv~l~~~~~~~-~~--~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~ 249 (839)
.+||+.+..++.-.||+|.+||.+... .. ..-....++.+|+|..++.+++.|.+++|+..++.
T Consensus 266 a~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 266 ARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 455699999999999999999987543 11 12235789999999999999999999999876554
No 286
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=95.96 E-value=0.8 Score=48.16 Aligned_cols=71 Identities=17% Similarity=0.276 Sum_probs=54.8
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC---CceeEEEecCC-CCCeEEEeecCCCeE-EEEEeCCeEE
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG---VLISETVWKNP-GGRLIGMSWSEDQTL-ICVVQDGTVY 111 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G---~ll~ti~~~~~-~~~I~~~~fs~de~L-v~v~~dGtv~ 111 (839)
.++.|++|..+|+.- |..|.|=+..- ..++++.-... .-.-..++||||+.| +.+.+.|+|+
T Consensus 2 ~~~~~~~Gk~lAi~q-------------d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~ 68 (282)
T PF15492_consen 2 HLALSSDGKLLAILQ-------------DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIR 68 (282)
T ss_pred ceeecCCCcEEEEEe-------------ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEE
Confidence 578999999999996 56777776543 45666655441 235789999999995 7999999999
Q ss_pred EEeCCCCcc
Q 003205 112 RYNIHAELI 120 (839)
Q Consensus 112 l~~~~G~~~ 120 (839)
+||+.|...
T Consensus 69 vfdl~g~~l 77 (282)
T PF15492_consen 69 VFDLMGSEL 77 (282)
T ss_pred EEeccccee
Confidence 999988653
No 287
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.92 E-value=1.4 Score=50.07 Aligned_cols=78 Identities=15% Similarity=0.214 Sum_probs=54.2
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecC-CCCCeEEEeecCCCeE-EEEEeCCeEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKN-PGGRLIGMSWSEDQTL-ICVVQDGTVY 111 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~-~~~~I~~~~fs~de~L-v~v~~dGtv~ 111 (839)
...+.+||+-..+.+.+-+.-.+.- .+.....+.||+ .+|.+..+++.-. +.-..--+.||.|++. +....|+ +.
T Consensus 252 Vq~idfSP~EkYLVT~s~~p~~~~~-~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s-is 329 (698)
T KOG2314|consen 252 VQFIDFSPNEKYLVTYSPEPIIVEE-DDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS-IS 329 (698)
T ss_pred ceeeecCCccceEEEecCCccccCc-ccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccce-EE
Confidence 3478888888888887654322211 123468899999 7999999988732 1134556799999995 6777765 88
Q ss_pred EEe
Q 003205 112 RYN 114 (839)
Q Consensus 112 l~~ 114 (839)
+|.
T Consensus 330 IyE 332 (698)
T KOG2314|consen 330 IYE 332 (698)
T ss_pred EEe
Confidence 894
No 288
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=95.85 E-value=0.28 Score=53.01 Aligned_cols=168 Identities=12% Similarity=0.062 Sum_probs=101.3
Q ss_pred EEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeCCCCccc-c-----CCCCCccccccCeEEEEEECCeEEEEec-CC
Q 003205 81 TVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAELIE-P-----NASMGKECFEENVVECVFWGNGVVCVTE-AN 152 (839)
Q Consensus 81 i~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~G~~~~-~-----~~g~~~~~~~~~V~~~~~~~~G~v~~t~-~~ 152 (839)
+..|. |-|.++.||.+++ |+++.+|-.+++|++..-+.. + .++|. -...|-+..|--..-.+.++ +.
T Consensus 52 ~~~H~--GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~---H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 52 VREHT--GCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHP---HRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhc--cccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCc---cccceEEEEEccCCeeEecCCCc
Confidence 45566 8999999999999 689999999999987643321 1 12221 03456666664332233333 22
Q ss_pred eEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc--------cccCCCceEEEE
Q 003205 153 RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--------KVDDTLSQKMAV 224 (839)
Q Consensus 153 ~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~--------~~~~~~i~~ia~ 224 (839)
..+...++++....-+..... ... +|-.-..+|..++.+..+.++-|..||....+ ......+..+-|
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~-~~~---~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F 202 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENN-NRG---DVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF 202 (609)
T ss_pred ceeEeeecccceeeeeecccC-ccc---ceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeee
Confidence 344455665433222221110 111 22222445577888889999999999988654 133456889999
Q ss_pred CCCC-cEEEEeecCCeEEEEecCC-CCccccccCC
Q 003205 225 SPNG-NFVACFTHDGRLVVNNTNF-SSPVIDESCE 257 (839)
Q Consensus 225 Spng-~~iA~~~~~g~i~i~ssd~-~~~l~e~~~~ 257 (839)
.|-- .+||+.+.+|-.-+|+.-. .+.+..+...
T Consensus 203 ~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~ 237 (609)
T KOG4227|consen 203 HPETPALILVNSETGGPNVFDRRMQARPVYQRSMF 237 (609)
T ss_pred cCCCceeEEeccccCCCCceeeccccchHHhhhcc
Confidence 9976 5778888888777776542 3344444433
No 289
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.82 E-value=1.1 Score=48.38 Aligned_cols=97 Identities=20% Similarity=0.186 Sum_probs=59.0
Q ss_pred EEEEcC-CCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeE--EEeecCCCeEEEEEe------
Q 003205 37 KVACAP-FGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLI--GMSWSEDQTLICVVQ------ 106 (839)
Q Consensus 37 ~va~sp-~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~--~~~fs~de~Lv~v~~------ 106 (839)
-++++| .+..+|.+|-| -...-+|++ +|+.+..+.-.. ++-. .-.||+||+++-.++
T Consensus 9 ~~a~~p~~~~avafaRRP-----------G~~~~v~D~~~g~~~~~~~a~~--gRHFyGHg~fs~dG~~LytTEnd~~~g 75 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRP-----------GTFALVFDCRTGQLLQRLWAPP--GRHFYGHGVFSPDGRLLYTTENDYETG 75 (305)
T ss_pred ceeeCCCCCeEEEEEeCC-----------CcEEEEEEcCCCceeeEEcCCC--CCEEecCEEEcCCCCEEEEeccccCCC
Confidence 467888 67777888743 355667775 666666664332 3321 235999999766554
Q ss_pred CCeEEEEeCCCCcc---ccCCCCCccccccCeEEEEEECCeEEEEecCC
Q 003205 107 DGTVYRYNIHAELI---EPNASMGKECFEENVVECVFWGNGVVCVTEAN 152 (839)
Q Consensus 107 dGtv~l~~~~G~~~---~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~ 152 (839)
.|.|-|||....+. +++. + -.+-.++.+.++|-.++..++
T Consensus 76 ~G~IgVyd~~~~~~ri~E~~s-~-----GIGPHel~l~pDG~tLvVANG 118 (305)
T PF07433_consen 76 RGVIGVYDAARGYRRIGEFPS-H-----GIGPHELLLMPDGETLVVANG 118 (305)
T ss_pred cEEEEEEECcCCcEEEeEecC-C-----CcChhhEEEcCCCCEEEEEcC
Confidence 57899998774431 2221 1 112256778889955554444
No 290
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=95.70 E-value=1.6 Score=48.49 Aligned_cols=199 Identities=11% Similarity=0.088 Sum_probs=109.2
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEE--
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRY-- 113 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~-- 113 (839)
.+++||+|..+-+..- +.++.+-+.+ .+|+.+.+|.-.. +..+ +-++ ++...+...||....+
T Consensus 109 ~~~ls~dgk~l~V~n~----------~p~~~V~VvD~~~~kvv~ei~vp~--~~~v-y~t~-e~~~~~~~~Dg~~~~v~~ 174 (352)
T TIGR02658 109 MTSLTPDNKTLLFYQF----------SPSPAVGVVDLEGKAFVRMMDVPD--CYHI-FPTA-NDTFFMHCRDGSLAKVGY 174 (352)
T ss_pred eEEECCCCCEEEEecC----------CCCCEEEEEECCCCcEEEEEeCCC--CcEE-EEec-CCccEEEeecCceEEEEe
Confidence 6778888887776631 1367788888 5777888887633 3332 2233 3333445566666554
Q ss_pred eCCCCccccCCC--CCccccccCeE-EEEEEC--CeEEEEecCCeEEEEecCC-Cc---eEEE-cCCC--CCCCCCceEE
Q 003205 114 NIHAELIEPNAS--MGKECFEENVV-ECVFWG--NGVVCVTEANRYFCMADFA-TM---KVCE-LARP--EVEELPHCVA 181 (839)
Q Consensus 114 ~~~G~~~~~~~g--~~~~~~~~~V~-~~~~~~--~G~v~~t~~~~~~~v~~~~-~~---~~~~-l~~~--~~~~~~~~w~ 181 (839)
+-.|+....+.. +. + +..|- .-.+++ ++.+++|..+.++.++--. .. ..+. +... ..+-.|..|.
T Consensus 175 d~~g~~~~~~~~vf~~-~--~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q 251 (352)
T TIGR02658 175 GTKGNPKIKPTEVFHP-E--DEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQ 251 (352)
T ss_pred cCCCceEEeeeeeecC-C--ccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcce
Confidence 234553211110 00 0 00000 013344 4555677778887776211 11 1111 1110 0011355555
Q ss_pred EeCCCCCCCCcEEEEEEe----------CCeEEEEecCCcc---c-ccCCCceEEEECCCCc-EEEEee-cCCeEEEEec
Q 003205 182 VIEPKYTMTGSVEVLIGT----------DAGILMLDEDGVQ---K-VDDTLSQKMAVSPNGN-FVACFT-HDGRLVVNNT 245 (839)
Q Consensus 182 vi~~~~S~~~~~~v~~s~----------d~tv~l~~~~~~~---~-~~~~~i~~ia~Spng~-~iA~~~-~~g~i~i~ss 245 (839)
. ..++++|+.+..+.. +++|.++|..... . .-..+..+|+|||||+ ++...+ .++++.|++.
T Consensus 252 ~--ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 252 Q--VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred e--EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 4 356778887776542 3578888877654 1 2345688999999999 666556 4678999987
Q ss_pred CCCCccccc
Q 003205 246 NFSSPVIDE 254 (839)
Q Consensus 246 d~~~~l~e~ 254 (839)
.-.+.+...
T Consensus 330 ~t~k~i~~i 338 (352)
T TIGR02658 330 ETGKELSSV 338 (352)
T ss_pred cCCeEEeee
Confidence 655555443
No 291
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.69 E-value=3.8 Score=52.34 Aligned_cols=111 Identities=15% Similarity=0.200 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHcCCcchHHhHHhHc---C-CChHHHHHHHHHHHHhCCChhHHHHhhcc---C---CCCCCchHHHHHHH
Q 003205 693 SISDTIRTCIVLGNHRAAMKVKTEF---K-VSEKRWYWLKVFALATKRDWDALERFSKE---K---RPPIGYRPFVEACV 762 (839)
Q Consensus 693 Sl~~ti~~l~~~~~~k~a~~l~k~f---k-vsdkr~~~~kl~ala~~~~w~~L~~f~~~---K---KspIgyepfv~~~~ 762 (839)
+.+..|..|.+.|+.+.|.++-++. + .|+...|-..|.++++.|++++-.++..+ + -..+-|-.+++.|.
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4566777788889888777764332 3 35667899999999999999988877643 1 12356778999999
Q ss_pred hcCCHHHHHHhhccCC------CH---HHHHHHHHHcCCHHHHHHHHHhc
Q 003205 763 DADEKGEALKYIPKLV------DP---RERAEAYARIGMAKEAADAASQA 803 (839)
Q Consensus 763 ~~~~~~ea~~yI~~i~------d~---~~r~~~~~~~~~~~~A~~~a~~~ 803 (839)
+.|+.++|..++..+. +. .--+..|.++|++++|.+...+.
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999988877653 22 56788999999999999887655
No 292
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.65 E-value=2.2 Score=49.01 Aligned_cols=140 Identities=16% Similarity=0.281 Sum_probs=76.9
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEE
Q 003205 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVY 111 (839)
Q Consensus 32 ~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~ 111 (839)
+.....++.+|+|..|++.. ++...||+..+-.-.. .+.. .++.|.+.+..++..++++|.
T Consensus 32 ~~~p~~ls~npngr~v~V~g-------------~geY~iyt~~~~r~k~-~G~g-----~~~vw~~~n~yAv~~~~~~I~ 92 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCG-------------DGEYEIYTALAWRNKA-FGSG-----LSFVWSSRNRYAVLESSSTIK 92 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEE-------------TTEEEEEETTTTEEEE-EEE------SEEEE-TSSEEEEE-TTS-EE
T ss_pred CcCCeeEEECCCCCEEEEEc-------------CCEEEEEEccCCcccc-cCce-----eEEEEecCccEEEEECCCeEE
Confidence 44456899999999999964 6889999955443322 3333 778899999999999999999
Q ss_pred EE-eCCCCcc-ccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCce-EEEcCCCCCCCCCceEEEeCCCCC
Q 003205 112 RY-NIHAELI-EPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMK-VCELARPEVEELPHCVAVIEPKYT 188 (839)
Q Consensus 112 l~-~~~G~~~-~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~-~~~l~~~~~~~~~~~w~vi~~~~S 188 (839)
+| ++.++-. ++..+. ..-++++ |.++...+.++..+.++++.+ ..++. . .+ +-.| -+|
T Consensus 93 I~kn~~~~~~k~i~~~~---------~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~---v--~~-vk~V---~Ws 153 (443)
T PF04053_consen 93 IYKNFKNEVVKSIKLPF---------SVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRID---V--SA-VKYV---IWS 153 (443)
T ss_dssp EEETTEE-TT-----SS----------EEEEE--SSSEEEEETTEEEEE-TTT--EEEEES---S---E--EEE---EE-
T ss_pred EEEcCccccceEEcCCc---------ccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEe---c--CC-CcEE---EEE
Confidence 97 5543331 222221 2235666 666666555566666676443 33332 1 11 1112 234
Q ss_pred CCCcEEEEEEeCCeEEEEecCC
Q 003205 189 MTGSVEVLIGTDAGILMLDEDG 210 (839)
Q Consensus 189 ~~~~~~v~~s~d~tv~l~~~~~ 210 (839)
++|+.+++++.+ ++++++.+-
T Consensus 154 ~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 154 DDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp TTSSEEEEE-S--SEEEEEE-H
T ss_pred CCCCEEEEEeCC-eEEEEEecc
Confidence 588988888755 577776553
No 293
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.55 E-value=0.18 Score=57.42 Aligned_cols=166 Identities=13% Similarity=0.102 Sum_probs=102.7
Q ss_pred CceEEEEcCC----CCc-e-eEEEecCCCCCeEEEeecCCCe-EEEEEeCC---eEEEEeCCCCccccCCCCCccccccC
Q 003205 65 LRKLRIFNSA----GVL-I-SETVWKNPGGRLIGMSWSEDQT-LICVVQDG---TVYRYNIHAELIEPNASMGKECFEEN 134 (839)
Q Consensus 65 ~~~I~iy~~~----G~l-l-~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dG---tv~l~~~~G~~~~~~~g~~~~~~~~~ 134 (839)
+..+-.|+.. ++. + .+|. +. ..|..|.|.-.|. |++|..+| .|.|+.+.-...+..+.. . .+.
T Consensus 496 ~~~~~~W~~~~~~e~~~~v~~~I~-~~--k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~k--s--kG~ 568 (733)
T KOG0650|consen 496 DAAVVTWSRASLDELEKGVCIVIK-HP--KSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRK--S--KGL 568 (733)
T ss_pred cccceeechhhhhhhccceEEEEe-cC--CccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhh--c--CCc
Confidence 5567788866 221 1 2233 33 7899999999987 67777643 366666542222211111 0 345
Q ss_pred eEEEEEECCeEEEEecCCeEEEEecCCCce-EEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-
Q 003205 135 VVECVFWGNGVVCVTEANRYFCMADFATMK-VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ- 212 (839)
Q Consensus 135 V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~-~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~- 212 (839)
|..+.|.|.--.++..+.+-..+.|+.... ...|- +..-| +-.-..+|.|.-+++.+.|+.+.-+|.+-..
T Consensus 569 vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~------tg~kw-iS~msihp~GDnli~gs~d~k~~WfDldlssk 641 (733)
T KOG0650|consen 569 VQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLL------TGSKW-ISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK 641 (733)
T ss_pred eeEEEecCCCceEEEEeccceEEEehhHHHHHHHHh------cCCee-eeeeeecCCCCeEEEecCCCeeEEEEcccCcc
Confidence 888999984444433333333344443211 11111 11223 1111234489999999999998888888442
Q ss_pred -----cccCCCceEEEECCCCcEEEEeecCCeEEEEe
Q 003205 213 -----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (839)
Q Consensus 213 -----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~s 244 (839)
+.|...+..|+|.+...+.|++++||++.|+.
T Consensus 642 Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 642 PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 67888899999999999999999999998875
No 294
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.40 E-value=3.1 Score=43.92 Aligned_cols=177 Identities=14% Similarity=0.212 Sum_probs=94.9
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEe-CCeEEEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQ-DGTVYRY 113 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~-dGtv~l~ 113 (839)
-.-+++.|+++.++.+.| ..+.|-.++.+|+++.+++... .+..-++.+..++.++++.+ ++++.++
T Consensus 24 ~SGLTy~pd~~tLfaV~d-----------~~~~i~els~~G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQD-----------EPGEIYELSLDGKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp EEEEEEETTTTEEEEEET-----------TTTEEEEEETT--EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred ccccEEcCCCCeEEEEEC-----------CCCEEEEEcCCCCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence 458899999887777765 4788999999999999999987 48899999999998888775 8888888
Q ss_pred eC--CCCc------cccCCCCCccccccCeEEEEEEC--CeEEEEecCC--eEEEEecCCCc-eEE-----EcCCCCCC-
Q 003205 114 NI--HAEL------IEPNASMGKECFEENVVECVFWG--NGVVCVTEAN--RYFCMADFATM-KVC-----ELARPEVE- 174 (839)
Q Consensus 114 ~~--~G~~------~~~~~g~~~~~~~~~V~~~~~~~--~G~v~~t~~~--~~~~v~~~~~~-~~~-----~l~~~~~~- 174 (839)
+. .++. .++.++.... -..++-.+..-+ +.+.++.... .+|.+..+..+ ... .+......
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~-~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNK-GNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp EE----TT--EEEEEEEE---S----SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred EEeccccccchhhceEEecccccC-CCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence 65 3322 1223332100 023344444444 5555555432 46666653211 110 01110111
Q ss_pred CCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----cccC---------CCceEEEECCCC
Q 003205 175 ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDD---------TLSQKMAVSPNG 228 (839)
Q Consensus 175 ~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----~~~~---------~~i~~ia~Spng 228 (839)
..++.-++.+. +|...|+-+.+..|..+|.+|.. .+.. ..--.|+|.|+|
T Consensus 171 ~d~S~l~~~p~----t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G 233 (248)
T PF06977_consen 171 RDLSGLSYDPR----TGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG 233 (248)
T ss_dssp S---EEEEETT----TTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred ccccceEEcCC----CCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCC
Confidence 34565555444 66777776667888888888763 1111 124577777776
No 295
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.17 E-value=1 Score=46.56 Aligned_cols=179 Identities=11% Similarity=0.069 Sum_probs=94.3
Q ss_pred CCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEe-CCCCcccc-CCCCCccccc-cCeEEEE
Q 003205 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYN-IHAELIEP-NASMGKECFE-ENVVECV 139 (839)
Q Consensus 64 ~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~-~~G~~~~~-~~g~~~~~~~-~~V~~~~ 139 (839)
.++.|..|+. +|+++.+..... .+...-...++.++++..||.++.+| ..|+..-. ..... +... .......
T Consensus 44 ~~~~l~~~d~~tG~~~W~~~~~~---~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~ 119 (238)
T PF13360_consen 44 GDGNLYALDAKTGKVLWRFDLPG---PISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS-PPAGVRSSSSPA 119 (238)
T ss_dssp TTSEEEEEETTTSEEEEEEECSS---CGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS-CTCSTB--SEEE
T ss_pred CCCEEEEEECCCCCEEEEeeccc---cccceeeecccccccccceeeeEecccCCcceeeeeccccc-cccccccccCce
Confidence 5899999995 999999998744 22211245578888888999888888 68887332 11110 0001 1112334
Q ss_pred EECCeEEEEecCCeEEEEecCCCceEEEcCCCCCCCCCceEEE----eCCCCCCCCcEEEEEEeCCeEEEEecCCcc---
Q 003205 140 FWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAV----IEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--- 212 (839)
Q Consensus 140 ~~~~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~v----i~~~~S~~~~~~v~~s~d~tv~l~~~~~~~--- 212 (839)
+.++.+++.+.++.++.++--.+...+......-......+.+ -.+.++ ++ .+...+.++.++.+|.....
T Consensus 120 ~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w 197 (238)
T PF13360_consen 120 VDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLW 197 (238)
T ss_dssp EETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEE
T ss_pred EecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEE
Confidence 4456666666688888777444433333321000001111000 000011 33 44444445555555655433
Q ss_pred cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCC
Q 003205 213 KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSS 249 (839)
Q Consensus 213 ~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~ 249 (839)
....+.+.. .+.++|..+.+.+.+|++..++..-++
T Consensus 198 ~~~~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 198 SKPISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EECSS-ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred EecCCCccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 111122211 156777888888888888888765343
No 296
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.13 E-value=0.32 Score=55.51 Aligned_cols=155 Identities=15% Similarity=0.191 Sum_probs=92.4
Q ss_pred CceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeE---EEEEeCCe--EEEEeCCCCc---cccCCCCCccccccCeE
Q 003205 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTL---ICVVQDGT--VYRYNIHAEL---IEPNASMGKECFEENVV 136 (839)
Q Consensus 65 ~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~L---v~v~~dGt--v~l~~~~G~~---~~~~~g~~~~~~~~~V~ 136 (839)
...+.+=+.+|.-...+.-.. ..+..=.|+|+++. +.....++ +.++++.... ...+.|+ -.
T Consensus 172 ~~~l~~~D~dg~~~~~l~~~~--~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~--------~~ 241 (425)
T COG0823 172 PYELALGDYDGYNQQKLTDSG--SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN--------NG 241 (425)
T ss_pred CceEEEEccCCcceeEecccC--cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc--------cC
Confidence 455555556666555555443 56777889999974 34444443 5555654322 1112222 12
Q ss_pred EEEEECCeEEEEec---CC--eEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCC---eEEEEec
Q 003205 137 ECVFWGNGVVCVTE---AN--RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDA---GILMLDE 208 (839)
Q Consensus 137 ~~~~~~~G~v~~t~---~~--~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~---tv~l~~~ 208 (839)
.-+|+|+|.-++-. ++ ++|.+ |+.+....+|.+ ..+++. .|.+||||+.+|+++..+ .|++.+.
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~-dl~~~~~~~Lt~------~~gi~~-~Ps~spdG~~ivf~Sdr~G~p~I~~~~~ 313 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLM-DLDGKNLPRLTN------GFGINT-SPSWSPDGSKIVFTSDRGGRPQIYLYDL 313 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEE-cCCCCcceeccc------CCcccc-CccCCCCCCEEEEEeCCCCCcceEEECC
Confidence 34778877655432 22 45544 444443333432 222333 789999999999998733 6788888
Q ss_pred CCcc----cccCCCceEEEECCCCcEEEEeecC
Q 003205 209 DGVQ----KVDDTLSQKMAVSPNGNFVACFTHD 237 (839)
Q Consensus 209 ~~~~----~~~~~~i~~ia~Spng~~iA~~~~~ 237 (839)
+|.. ....+....-..||||++||+-+.+
T Consensus 314 ~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 314 EGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSS 346 (425)
T ss_pred CCCceeEeeccCCCCcCccCCCCCCEEEEEecc
Confidence 8764 2223333377889999999998854
No 297
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=1 Score=49.04 Aligned_cols=203 Identities=13% Similarity=0.137 Sum_probs=114.9
Q ss_pred CCeEEEeecCCCeEEEEEeCCeEEEEeCC-CCccccCCCCCccccccCeEEEEEEC-CeEEEEecC-C--eEEEEecCCC
Q 003205 88 GRLIGMSWSEDQTLICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWG-NGVVCVTEA-N--RYFCMADFAT 162 (839)
Q Consensus 88 ~~I~~~~fs~de~Lv~v~~dGtv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~-~--~~~~v~~~~~ 162 (839)
+.|.++.-. ||.|++..++|.+.+|... |......+-.-+ .-.++..++-.+ .--+++++. . +...+|+.+.
T Consensus 106 ~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~la--~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~ 182 (412)
T KOG3881|consen 106 KSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA--TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ 182 (412)
T ss_pred ccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceeee--cCCceeeeccCCCCCceEecCchhcccceeeeeccc
Confidence 678888887 9999999999999999643 332110000000 022344444444 222333332 2 2345565553
Q ss_pred c-eEEEcCCCC---CCCCCceEEEeCCCCCCC--CcEEEEEEeCCeEEEEecCCcc------cccCCCceEEEECCCCcE
Q 003205 163 M-KVCELARPE---VEELPHCVAVIEPKYTMT--GSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNF 230 (839)
Q Consensus 163 ~-~~~~l~~~~---~~~~~~~w~vi~~~~S~~--~~~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~Spng~~ 230 (839)
. +.+.=.+++ ++-....|. -...|-+. ....+.+..-+.|.++|..-.. .....+++.+..-|+|.+
T Consensus 183 ~~qiw~aKNvpnD~L~LrVPvW~-tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~ 261 (412)
T KOG3881|consen 183 SKQIWSAKNVPNDRLGLRVPVWI-TDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNF 261 (412)
T ss_pred ceeeeeccCCCCccccceeeeee-ccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcE
Confidence 2 222212221 333355573 23345555 6788888889999999887433 234567888888888888
Q ss_pred EEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCC--ceEeccCCCeEEeecCCc-
Q 003205 231 VACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAE--PVQYFYDEPLVLIPECDG- 307 (839)
Q Consensus 231 iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~--~v~f~~~~~~~l~~E~DG- 307 (839)
|-+++..|.+..++..-+..+- || +-|-.|. ++.--+..+++++...|=
T Consensus 262 Iy~gn~~g~l~~FD~r~~kl~g---------------~~-------------~kg~tGsirsih~hp~~~~las~GLDRy 313 (412)
T KOG3881|consen 262 IYTGNTKGQLAKFDLRGGKLLG---------------CG-------------LKGITGSIRSIHCHPTHPVLASCGLDRY 313 (412)
T ss_pred EEEecccchhheecccCceeec---------------cc-------------cCCccCCcceEEEcCCCceEEeecccee
Confidence 7777766666554332111110 11 1112222 344444567888889995
Q ss_pred eEEEccCcceeeecc
Q 003205 308 VRILSNSSMEFLQRV 322 (839)
Q Consensus 308 vRIit~~~~~~l~~V 322 (839)
|||+..+.-.+|.+|
T Consensus 314 vRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 314 VRIHDIKTRKLLHKV 328 (412)
T ss_pred EEEeecccchhhhhh
Confidence 999999877777665
No 298
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=94.78 E-value=6.6 Score=44.05 Aligned_cols=177 Identities=15% Similarity=0.106 Sum_probs=89.8
Q ss_pred CCceEEEEcC-CCCceeEEEecCCCCCeE-----EEeecCCCeEEEEEeCCeEEEEeC-CCCcc-ccCCCCCc--cccc-
Q 003205 64 ALRKLRIFNS-AGVLISETVWKNPGGRLI-----GMSWSEDQTLICVVQDGTVYRYNI-HAELI-EPNASMGK--ECFE- 132 (839)
Q Consensus 64 ~~~~I~iy~~-~G~ll~ti~~~~~~~~I~-----~~~fs~de~Lv~v~~dGtv~l~~~-~G~~~-~~~~g~~~--~~~~- 132 (839)
.++.|..|+. +|+.+++..... ..+. .... .++.+++...+|.+..+|. .|+.. +...+... ....
T Consensus 153 ~~g~l~a~d~~tG~~~W~~~~~~--~~~~~~~~~sp~~-~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~ 229 (377)
T TIGR03300 153 NDGRLTALDAATGERLWTYSRVT--PALTLRGSASPVI-ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELER 229 (377)
T ss_pred CCCeEEEEEcCCCceeeEEccCC--CceeecCCCCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhh
Confidence 4677888885 788877766543 1110 0111 1456667777888888875 67652 11111100 0000
Q ss_pred -cCeE-EEEEECCeEEEEe-cCCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecC
Q 003205 133 -ENVV-ECVFWGNGVVCVT-EANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED 209 (839)
Q Consensus 133 -~~V~-~~~~~~~G~v~~t-~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~ 209 (839)
..+. ...+. +|.++++ .++.++.++--.+...+.... .. + .+| ..+++.++..+.++.++.+|..
T Consensus 230 ~~~~~~~p~~~-~~~vy~~~~~g~l~a~d~~tG~~~W~~~~----~~---~--~~p--~~~~~~vyv~~~~G~l~~~d~~ 297 (377)
T TIGR03300 230 LVDVDGDPVVD-GGQVYAVSYQGRVAALDLRSGRVLWKRDA----SS---Y--QGP--AVDDNRLYVTDADGVVVALDRR 297 (377)
T ss_pred hhccCCccEEE-CCEEEEEEcCCEEEEEECCCCcEEEeecc----CC---c--cCc--eEeCCEEEEECCCCeEEEEECC
Confidence 0011 11222 4444443 456666655322222222211 00 1 011 1255666667778889999875
Q ss_pred -Ccc--cc---cCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCC
Q 003205 210 -GVQ--KV---DDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCE 257 (839)
Q Consensus 210 -~~~--~~---~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~ 257 (839)
|.. .. ....+....+ .|..|...+.+|.+.+++.+-++.+.++.+.
T Consensus 298 tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~ 349 (377)
T TIGR03300 298 SGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTD 349 (377)
T ss_pred CCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence 332 11 1111222222 4668888899999999987767777666543
No 299
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.092 Score=60.20 Aligned_cols=97 Identities=20% Similarity=0.201 Sum_probs=67.9
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeE-EEeecCCCeE-EEEEeCCeEEEEe
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLI-GMSWSEDQTL-ICVVQDGTVYRYN 114 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~-~~~fs~de~L-v~v~~dGtv~l~~ 114 (839)
.+-.+|--.+||+.. .++.|-++..+=+.|++|+.+. .++. +++|.|||+| +++.+||||++.|
T Consensus 25 ~~ewnP~~dLiA~~t------------~~gelli~R~n~qRlwtip~p~--~~v~~sL~W~~DGkllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 25 RIEWNPKMDLIATRT------------EKGELLIHRLNWQRLWTIPIPG--ENVTASLCWRPDGKLLAVGFKDGTIRLHD 90 (665)
T ss_pred EEEEcCccchhheec------------cCCcEEEEEeccceeEeccCCC--CccceeeeecCCCCEEEEEecCCeEEEEE
Confidence 344445445677664 5777778888889999999877 6666 9999999996 7999999999998
Q ss_pred C-CCCc-cccCCCCCccccccCeEEEEEECCeEEEEecCCe
Q 003205 115 I-HAEL-IEPNASMGKECFEENVVECVFWGNGVVCVTEANR 153 (839)
Q Consensus 115 ~-~G~~-~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~ 153 (839)
. .|.. ..+.... +..|. ..+|+-+-+..-++..
T Consensus 91 ve~~~~l~~~~~s~-----e~~is-~~~w~~~~v~~e~n~~ 125 (665)
T KOG4640|consen 91 VEKGGRLVSFLFSV-----ETDIS-KGIWDRIEVRVEENNR 125 (665)
T ss_pred ccCCCceecccccc-----ccchh-eeecccceeecccccc
Confidence 5 3443 4432322 34444 6788867666665544
No 300
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=94.65 E-value=0.081 Score=36.05 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=31.5
Q ss_pred CCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEe
Q 003205 75 GVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYN 114 (839)
Q Consensus 75 G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~ 114 (839)
++++.++..+. +.|.++.|++++. +++++.||++++|+
T Consensus 2 ~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHT--GPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecC--CceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 56677777777 8899999999776 57999999999985
No 301
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.62 E-value=0.48 Score=54.15 Aligned_cols=177 Identities=15% Similarity=0.125 Sum_probs=99.5
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCC-ceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-E-EEEEeCCeEEEE
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESAL-RKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-L-ICVVQDGTVYRY 113 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~-~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-L-v~v~~dGtv~l~ 113 (839)
.-+.+|+|..||.+.-. ... +.|.+++.+...-..+.-.. +.-..-.|||||+ | ++...||...+|
T Consensus 197 ~p~ws~~~~~~~y~~f~---------~~~~~~i~~~~l~~g~~~~i~~~~--g~~~~P~fspDG~~l~f~~~rdg~~~iy 265 (425)
T COG0823 197 TPAWSPDGKKLAYVSFE---------LGGCPRIYYLDLNTGKRPVILNFN--GNNGAPAFSPDGSKLAFSSSRDGSPDIY 265 (425)
T ss_pred ccccCcCCCceEEEEEe---------cCCCceEEEEeccCCccceeeccC--CccCCccCCCCCCEEEEEECCCCCccEE
Confidence 45778888888877411 123 67878876544333332222 4556778999997 4 588889987777
Q ss_pred --eCCCCccccCCCCCccccccCeE-EEEEECCeEEEEe-cC--C--eEEEEecCCCceEEEcCCCCCCCCCceEEEeCC
Q 003205 114 --NIHAELIEPNASMGKECFEENVV-ECVFWGNGVVCVT-EA--N--RYFCMADFATMKVCELARPEVEELPHCVAVIEP 185 (839)
Q Consensus 114 --~~~G~~~~~~~g~~~~~~~~~V~-~~~~~~~G~v~~t-~~--~--~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~ 185 (839)
|+.|+-..- +-+ ..++. .-.++++|-.++= ++ + ++|.++ .++....++.. ....++ .|
T Consensus 266 ~~dl~~~~~~~-Lt~-----~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~-~~g~~~~riT~----~~~~~~---~p 331 (425)
T COG0823 266 LMDLDGKNLPR-LTN-----GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYD-LEGSQVTRLTF----SGGGNS---NP 331 (425)
T ss_pred EEcCCCCccee-ccc-----CCccccCccCCCCCCEEEEEeCCCCCcceEEEC-CCCCceeEeec----cCCCCc---Cc
Confidence 777765322 212 11222 3355667755433 22 2 355443 44444445432 222322 67
Q ss_pred CCCCCCcEEEEEEeC-Ce--EEEEecCCcc----cccCCCceEEEECCCCcEEEEeecCC
Q 003205 186 KYTMTGSVEVLIGTD-AG--ILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDG 238 (839)
Q Consensus 186 ~~S~~~~~~v~~s~d-~t--v~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~~~~g 238 (839)
..||||..+++.+.. |. |...+..+.. .........-+++|||+.+-..+..+
T Consensus 332 ~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 332 VWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred cCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC
Confidence 888999999999863 32 3333332111 11222234567788888777766554
No 302
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.60 E-value=5.9 Score=42.16 Aligned_cols=216 Identities=17% Similarity=0.244 Sum_probs=118.9
Q ss_pred CCeEEEEEeCCeEEEEeCCCCc-cccCCCCCccccccCeEEEEEEC-CeEEEEecCCeEEE--EecCCCceEEE---cCC
Q 003205 98 DQTLICVVQDGTVYRYNIHAEL-IEPNASMGKECFEENVVECVFWG-NGVVCVTEANRYFC--MADFATMKVCE---LAR 170 (839)
Q Consensus 98 de~Lv~v~~dGtv~l~~~~G~~-~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~~~~~~--v~~~~~~~~~~---l~~ 170 (839)
+..|++++++| +.+|+..... ..... + ...|..+.+-+ -+.+++-.++.++. +..+....... .+.
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~-----~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL-K-----LSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEe-e-----cceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccc
Confidence 55688999999 7888772221 11111 1 22377777766 56666666665543 33443211100 000
Q ss_pred -----CCCC--CCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCc------c---cccCCCceEEEECCCCcEEEEe
Q 003205 171 -----PEVE--ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGV------Q---KVDDTLSQKMAVSPNGNFVACF 234 (839)
Q Consensus 171 -----~~~~--~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~------~---~~~~~~i~~ia~Spng~~iA~~ 234 (839)
..+. ...+.-++ .-...+...+.++...+|.++...+. . ..-..++..|++. ++.|+.+
T Consensus 80 ~~~~~~~~~~~~~v~~f~~---~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAV---NGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVG 154 (275)
T ss_pred cccccccccccCCeeEEee---ccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEE
Confidence 0011 12222221 11125566667777778877654431 1 1234677888888 4577777
Q ss_pred ecCCeEEEEecCCCC--ccccccC--------CCCCCCCceeeecCceEEEEecCEEEEEcCCCC-----ceEec-----
Q 003205 235 THDGRLVVNNTNFSS--PVIDESC--------ESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAE-----PVQYF----- 294 (839)
Q Consensus 235 ~~~g~i~i~ssd~~~--~l~e~~~--------~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~-----~v~f~----- 294 (839)
+.++ ..+.+-+-++ .+...+. .....|..+..-+++..++.+++.-.+++..|. .+.|.
T Consensus 155 ~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~fv~~~G~~~r~~~i~W~~~p~~ 233 (275)
T PF00780_consen 155 TSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGVFVNKNGEPSRKSTIQWSSAPQS 233 (275)
T ss_pred eCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecceEEEEcCCCCcCcccEEEcCCchhE
Confidence 6554 3344433111 1111111 113456777777878888888888888887774 33332
Q ss_pred --cCCCeEEeecCCceEEEccCcceeeeccchhh
Q 003205 295 --YDEPLVLIPECDGVRILSNSSMEFLQRVPAST 326 (839)
Q Consensus 295 --~~~~~~l~~E~DGvRIit~~~~~~l~~Vp~~~ 326 (839)
|..|.++.-..++|-|++-...+++|.++...
T Consensus 234 ~~~~~pyli~~~~~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 234 VAYSSPYLIAFSSNSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred EEEECCEEEEECCCEEEEEECcCCcEEEEEECCC
Confidence 22344444445789999999999999998654
No 303
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.53 E-value=4.4 Score=48.42 Aligned_cols=107 Identities=11% Similarity=0.132 Sum_probs=64.3
Q ss_pred EeCCCCCCCCcEEEEEEeC------------CeEEEEecCCcc--cccCCCceEEEECCCCcEEEEeecCCeEEE---Ee
Q 003205 182 VIEPKYTMTGSVEVLIGTD------------AGILMLDEDGVQ--KVDDTLSQKMAVSPNGNFVACFTHDGRLVV---NN 244 (839)
Q Consensus 182 vi~~~~S~~~~~~v~~s~d------------~tv~l~~~~~~~--~~~~~~i~~ia~Spng~~iA~~~~~g~i~i---~s 244 (839)
.-.|.|||||+.+.+++.. +.+++...++.. ....++|..+.+||||..||+.. +|.+++ ..
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr 477 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQ 477 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEe
Confidence 3456778888866666543 234433333321 12246799999999999999987 578887 33
Q ss_pred cCCCC-cc---ccccCCCCCCCCceeeecCceEEEEecC---EEEEEcCCCC
Q 003205 245 TNFSS-PV---IDESCESALPPEQIAWCGMDSVLLYWND---MLVMVAPQAE 289 (839)
Q Consensus 245 sd~~~-~l---~e~~~~~~~~p~~~~WcG~d~vv~~~~~---~l~lig~~~~ 289 (839)
.+-+. .+ .+........+.++.|-+++++++.-+. .+..+..+|.
T Consensus 478 ~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~ 529 (591)
T PRK13616 478 TEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGS 529 (591)
T ss_pred CCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCc
Confidence 32232 22 1122222234689999999998766442 3555555554
No 304
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.2 Score=55.31 Aligned_cols=224 Identities=12% Similarity=0.124 Sum_probs=130.9
Q ss_pred CCeEEEeecCCCeEEEEEeCCeEEEEeCCC----CccccCCCCCccccccCeEEEEEECCeEEEEecC-----CeEEEEe
Q 003205 88 GRLIGMSWSEDQTLICVVQDGTVYRYNIHA----ELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-----NRYFCMA 158 (839)
Q Consensus 88 ~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G----~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~-----~~~~~v~ 158 (839)
+.|..+.-|...-.+.++-||.++.|...+ ++...++.| -.-|..+..+-+|....|.+ .+++.|.
T Consensus 10 d~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraH-----L~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 10 DVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAH-----LGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHH-----HHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 556666667677778999999999995443 345555545 22344555566777777732 3566666
Q ss_pred cCCCceEEEcCCCCC----C---CC-CceEEE----------eC---------------------CCCCCCCcEEEEEEe
Q 003205 159 DFATMKVCELARPEV----E---EL-PHCVAV----------IE---------------------PKYTMTGSVEVLIGT 199 (839)
Q Consensus 159 ~~~~~~~~~l~~~~~----~---~~-~~~w~v----------i~---------------------~~~S~~~~~~v~~s~ 199 (839)
|++-+....+...|- . +. .+..+| .. -.+++.+...+.++.
T Consensus 85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 665443333332110 0 00 001111 00 014555666677777
Q ss_pred CCeEEEEecCCc-c-------------------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccC---
Q 003205 200 DAGILMLDEDGV-Q-------------------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESC--- 256 (839)
Q Consensus 200 d~tv~l~~~~~~-~-------------------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~--- 256 (839)
.|-|--|+..+. + .-..+...++.|||+|..++..+.|.+|.+....-++...|++-
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t 244 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT 244 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence 888899988851 1 01123467999999999999999999999877666666666652
Q ss_pred CCCCCC---C---ceeeecCceEEEEecCEEEEEcCC-CCceEeccCCCeEEeecCCceEEEccCcceeee
Q 003205 257 ESALPP---E---QIAWCGMDSVLLYWNDMLVMVAPQ-AEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQ 320 (839)
Q Consensus 257 ~~~~~p---~---~~~WcG~d~vv~~~~~~l~lig~~-~~~v~f~~~~~~~l~~E~DGvRIit~~~~~~l~ 320 (839)
+....| . .|.|--.=|+ +.++-=.|.- +..+.|.-.+..+|.+-+=||+|++-+...-.+
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmav----erelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~r 311 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAV----ERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVR 311 (558)
T ss_pred hhhhccccccccceeehhhhhhH----HhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEE
Confidence 222222 2 3333321111 1111111111 225667666888999999999999987555443
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.37 E-value=7.2 Score=40.20 Aligned_cols=139 Identities=10% Similarity=0.055 Sum_probs=84.0
Q ss_pred CceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeC-CCCc-cccCCCCCccccccCeEEEEEE
Q 003205 65 LRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNI-HAEL-IEPNASMGKECFEENVVECVFW 141 (839)
Q Consensus 65 ~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~-~G~~-~~~~~g~~~~~~~~~V~~~~~~ 141 (839)
+++|..||. +|+.+++.......+..+......++.+++.+.+|.++.||. .|+. -++..+.... .. ....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~---~~---~~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS---GA---PVVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG---SG---EEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc---ce---eeec
Confidence 578999997 999999998743124445444546778888889999999996 8987 2334333211 11 2456
Q ss_pred CCeEEEEecCCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecC-Ccc
Q 003205 142 GNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED-GVQ 212 (839)
Q Consensus 142 ~~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~-~~~ 212 (839)
++.+++.+.++.++.++--.+...+....... .....+.. +....+++.++....++.|+.+|.. |..
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS-PPAGVRSS--SSPAVDGDRLYVGTSSGKLVALDPKTGKL 144 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SS-CTCSTB----SEEEEETTEEEEEETCSEEEEEETTTTEE
T ss_pred ccccccccceeeeEecccCCcceeeeeccccc-cccccccc--cCceEecCEEEEEeccCcEEEEecCCCcE
Confidence 67777777778888887444444444211000 00011111 1111246777777768999999955 543
No 306
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.37 E-value=16 Score=44.16 Aligned_cols=135 Identities=16% Similarity=0.186 Sum_probs=79.4
Q ss_pred Cc-eEEEEcCC---CCc---------eeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEE--eCCCC-ccccCCCCC
Q 003205 65 LR-KLRIFNSA---GVL---------ISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRY--NIHAE-LIEPNASMG 127 (839)
Q Consensus 65 ~~-~I~iy~~~---G~l---------l~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~--~~~G~-~~~~~~g~~ 127 (839)
.+ .++||+.+ |+- +.+++....+.++-.+.-+.+-. .||+..||+|..| |+.-+ -.++.+.|.
T Consensus 90 np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~ 169 (933)
T KOG2114|consen 90 NPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHR 169 (933)
T ss_pred CceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeecc
Confidence 45 89999853 221 22222221125677777777766 4799999999988 43111 122333221
Q ss_pred ccccccCeEEEEEECCeEE---EEecCC-eEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeE
Q 003205 128 KECFEENVVECVFWGNGVV---CVTEAN-RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGI 203 (839)
Q Consensus 128 ~~~~~~~V~~~~~~~~G~v---~~t~~~-~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv 203 (839)
....|....+..+|.. ++|.+. +.|.+.+-. |....+...+ .+-.||+.-+ ++..++.+.+..+
T Consensus 170 ---~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G--~~lnCss~~~------~t~qfIca~~e~l 237 (933)
T KOG2114|consen 170 ---GKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNG--ISLNCSSFSD------GTYQFICAGSEFL 237 (933)
T ss_pred ---CCCCceeeEEecCCceeEEEEecceeEEEEecCCC-cceeeeccCC--ccceeeecCC------CCccEEEecCceE
Confidence 1456777777776655 334333 567777643 6666565422 3567886533 3335667777888
Q ss_pred EEEecCCc
Q 003205 204 LMLDEDGV 211 (839)
Q Consensus 204 ~l~~~~~~ 211 (839)
+.++.+|.
T Consensus 238 ~fY~sd~~ 245 (933)
T KOG2114|consen 238 YFYDSDGR 245 (933)
T ss_pred EEEcCCCc
Confidence 99988874
No 307
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=94.04 E-value=0.16 Score=55.35 Aligned_cols=89 Identities=13% Similarity=0.104 Sum_probs=62.0
Q ss_pred CceEEEEcCC-CCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeCCCCc--cccCCCCCccccccCeEEEEE
Q 003205 65 LRKLRIFNSA-GVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAEL--IEPNASMGKECFEENVVECVF 140 (839)
Q Consensus 65 ~~~I~iy~~~-G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~G~~--~~~~~g~~~~~~~~~V~~~~~ 140 (839)
...+.+|+.. |.... +-+|- .-+.+++|+||++ +++...|+.||+-.+.+.+ ..|.+|| .+=|....+
T Consensus 131 ~~~~di~s~~~~~~~~-~lGhv--Sml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH-----~eFVS~isl 202 (390)
T KOG3914|consen 131 VYSFDILSADSGRCEP-ILGHV--SMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGH-----KEFVSTISL 202 (390)
T ss_pred ceeeeeecccccCcch-hhhhh--hhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcccc-----Hhheeeeee
Confidence 3344555533 33222 22455 6789999999988 5799999999998888877 6789999 667887777
Q ss_pred ECCeEEEEecCCe-EEEEecCCC
Q 003205 141 WGNGVVCVTEANR-YFCMADFAT 162 (839)
Q Consensus 141 ~~~G~v~~t~~~~-~~~v~~~~~ 162 (839)
.++-. +++++|+ -..+|++.+
T Consensus 203 ~~~~~-LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 203 TDNYL-LLSGSGDKTLRLWDITS 224 (390)
T ss_pred ccCce-eeecCCCCcEEEEeccc
Confidence 75554 7777664 345666653
No 308
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=93.76 E-value=2.4 Score=44.24 Aligned_cols=98 Identities=19% Similarity=0.203 Sum_probs=67.2
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc--CCCCceeEEEecCCCCCeEEEeecCCC-eEEEEEeCC
Q 003205 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN--SAGVLISETVWKNPGGRLIGMSWSEDQ-TLICVVQDG 108 (839)
Q Consensus 32 ~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~--~~G~ll~ti~~~~~~~~I~~~~fs~de-~Lv~v~~dG 108 (839)
.+.....++||+|.+.+++.| .+.|..|. .+|.-+..+.-...-+.=.+..|+.+. +++++++||
T Consensus 158 ~~~~ns~~~snd~~~~~~Vgd------------s~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg 225 (344)
T KOG4532|consen 158 NLTQNSLHYSNDPSWGSSVGD------------SRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDG 225 (344)
T ss_pred ccceeeeEEcCCCceEEEecC------------CCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCC
Confidence 355788999999999999986 35566665 455555554433212566888999865 468999999
Q ss_pred eEEEEeC--CCCc---cccCCCCCccccccCeEEEEEECCeE
Q 003205 109 TVYRYNI--HAEL---IEPNASMGKECFEENVVECVFWGNGV 145 (839)
Q Consensus 109 tv~l~~~--~G~~---~~~~~g~~~~~~~~~V~~~~~~~~G~ 145 (839)
++-+||. .|.. .+...+| - ...|..|+|++.|.
T Consensus 226 ~~~I~DVR~~~tpm~~~sstrp~--h--nGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 226 TCAIYDVRNMATPMAEISSTRPH--H--NGAFRVCRFSLYGL 263 (344)
T ss_pred cEEEEEecccccchhhhcccCCC--C--CCceEEEEecCCCc
Confidence 9999985 3444 2223333 1 56799999997553
No 309
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.74 E-value=0.49 Score=55.97 Aligned_cols=273 Identities=17% Similarity=0.213 Sum_probs=147.2
Q ss_pred CHHHHHHHHHHhCcHHHHHHHHhcCCCCCCchhhhhccCchHHHHHHHHHcCCchHHHHHHHHHHhhCChhHHHHHHhcC
Q 003205 505 SYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTR 584 (839)
Q Consensus 505 s~~~IA~~A~~~gR~~LA~~Ll~~E~~~~~qV~lLl~~~~~~~AL~~Ai~S~D~dLI~~vll~l~~~l~~~~f~~~l~~~ 584 (839)
-....|+-+.+-.|-+.|.--|-+= +-..--+||.+|.+.+|-+-.-..+|.+.-.+ |
T Consensus 759 vW~nmA~McVkT~RLDVAkVClGhm-----------~~aRgaRAlR~a~q~~~e~eakvAvLAieLgM--------l--- 816 (1416)
T KOG3617|consen 759 VWDNMASMCVKTRRLDVAKVCLGHM-----------KNARGARALRRAQQNGEEDEAKVAVLAIELGM--------L--- 816 (1416)
T ss_pred HHHHHHHHhhhhccccHHHHhhhhh-----------hhhhhHHHHHHHHhCCcchhhHHHHHHHHHhh--------H---
Confidence 3555666666666666665333221 11235678899988887443333333332211 1
Q ss_pred hhHHHHHHHHHHhcCHHHHHHHHHhcCChhHHHHH-------HHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHhhhhhc
Q 003205 585 PLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFL-------LWKESWELGKNPMASNGSALHGPRIKRIEKAHSLFSET 657 (839)
Q Consensus 585 p~a~~~~~~y~~~~~~~~L~~~~~~~~~~~e~a~~-------~l~~~~~~~~~~~~~~~~~~~~~k~~~L~~a~~~~~~~ 657 (839)
..|..+| -+...+++|..+|...+...|+-.+ +|++.+-+-.. .++ .| .-++.|..+|.++
T Consensus 817 EeA~~lY---r~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~-------~Le-ar-~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 817 EEALILY---RQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAK-------YLE-AR-RDIEAALEYYEKA 884 (1416)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHH-------HHH-hh-ccHHHHHHHHHhc
Confidence 3343333 3334557788888777766654332 23332211100 000 11 2367778888877
Q ss_pred cccchHH-HHHHHHHHHHHHHHHHHhhhcccc-------ccC--------CCH-------HHHHHHHHHcCCcchHHhHH
Q 003205 658 KEHTFES-KAAEEHAKLLRIQHELEVSTKQAI-------FVD--------SSI-------SDTIRTCIVLGNHRAAMKVK 714 (839)
Q Consensus 658 ~~~~f~~-~~~~~~~~Ll~~Q~~Le~~~~~~~-------f~~--------~Sl-------~~ti~~l~~~~~~k~a~~l~ 714 (839)
..+.|+. +++.+.-+-++.-.+ +..+++ ++. +++ ...++-.+..|....|.+++
T Consensus 885 ~~hafev~rmL~e~p~~~e~Yv~---~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA 961 (1416)
T KOG3617|consen 885 GVHAFEVFRMLKEYPKQIEQYVR---RKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIA 961 (1416)
T ss_pred CChHHHHHHHHHhChHHHHHHHH---hccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHH
Confidence 7777652 333333322221110 000000 000 011 11122222346667788888
Q ss_pred hHcCCChHHHHHHHHHHHHhCCChhHHHHhhcc---CCCCCC------c-hHHHHHHHhcCCH--HHHHHhhccCC-CHH
Q 003205 715 TEFKVSEKRWYWLKVFALATKRDWDALERFSKE---KRPPIG------Y-RPFVEACVDADEK--GEALKYIPKLV-DPR 781 (839)
Q Consensus 715 k~fkvsdkr~~~~kl~ala~~~~w~~L~~f~~~---KKspIg------y-epfv~~~~~~~~~--~ea~~yI~~i~-d~~ 781 (839)
.+-+ ||--.+.--+-|-..++..+--+|..- -++.|- + +.....|+-.|.. -+|++|-..++ ...
T Consensus 962 ~esg--d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~ 1039 (1416)
T KOG3617|consen 962 EESG--DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAH 1039 (1416)
T ss_pred Hhcc--cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhh
Confidence 7765 555555555666666666655555521 112111 1 1234444444443 34788999888 458
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHHh
Q 003205 782 ERAEAYARIGMAKEAADAASQAKDGELLGRLKLTF 816 (839)
Q Consensus 782 ~r~~~~~~~~~~~~A~~~a~~~kd~~~L~~i~~~~ 816 (839)
.-+.+|-|.|++..|.+.|++-.....|+-|-+-.
T Consensus 1040 ~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DL 1074 (1416)
T KOG3617|consen 1040 KAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDL 1074 (1416)
T ss_pred HHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhc
Confidence 88999999999999999999999999999988776
No 310
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=93.41 E-value=4.4 Score=42.87 Aligned_cols=194 Identities=13% Similarity=0.093 Sum_probs=113.9
Q ss_pred CceEEEEcCCCCc---eeEEEecCCCCCeEEEeecC---CCe--EEEEEeCCeEEEEeCCCCcc-ccCCCCCccccccCe
Q 003205 65 LRKLRIFNSAGVL---ISETVWKNPGGRLIGMSWSE---DQT--LICVVQDGTVYRYNIHAELI-EPNASMGKECFEENV 135 (839)
Q Consensus 65 ~~~I~iy~~~G~l---l~ti~~~~~~~~I~~~~fs~---de~--Lv~v~~dGtv~l~~~~G~~~-~~~~g~~~~~~~~~V 135 (839)
-+.+.+|+..-.. +.++.-.. -..+..|-|.. ++. |+.+-.+|.+.+|..++... -+..|-... ...|
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~d-ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~--ki~~ 121 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTD-TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSK--KISV 121 (339)
T ss_pred ccceEEEeecccccCccceeeeec-ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchh--hhhh
Confidence 4678888854332 33443332 16788898985 444 57888999999996655442 222222111 1222
Q ss_pred E---EEEEEC--CeEEEEecCCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCC-CcEEEEEEeCCeEEEEecC
Q 003205 136 V---ECVFWG--NGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMT-GSVEVLIGTDAGILMLDED 209 (839)
Q Consensus 136 ~---~~~~~~--~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~-~~~~v~~s~d~tv~l~~~~ 209 (839)
. ..-+.+ +++++-.+++.+-.| +...+.++....... +.-.+|.. .||.. .+++.+.+.|+.+..||..
T Consensus 122 ~~~lslD~~~~~~~i~vs~s~G~~~~v-~~t~~~le~vq~wk~-He~E~Wta---~f~~~~pnlvytGgDD~~l~~~D~R 196 (339)
T KOG0280|consen 122 VEALSLDISTSGTKIFVSDSRGSISGV-YETEMVLEKVQTWKV-HEFEAWTA---KFSDKEPNLVYTGGDDGSLSCWDIR 196 (339)
T ss_pred eeeeEEEeeccCceEEEEcCCCcEEEE-ecceeeeeecccccc-cceeeeee---ecccCCCceEEecCCCceEEEEEec
Confidence 2 222333 454444445555423 233344443222111 55678976 33323 3556666779999999988
Q ss_pred ---Ccc----cccCCCceEEEECCC-CcEEEEeecCCeEEEEecC-CCCccccccCCCCCCCCceeee
Q 003205 210 ---GVQ----KVDDTLSQKMAVSPN-GNFVACFTHDGRLVVNNTN-FSSPVIDESCESALPPEQIAWC 268 (839)
Q Consensus 210 ---~~~----~~~~~~i~~ia~Spn-g~~iA~~~~~g~i~i~ssd-~~~~l~e~~~~~~~~p~~~~Wc 268 (839)
... +.|...|.+|.-||. +-.||+++.|-+|.+|++- .++.+ |++.....+.-+.|-
T Consensus 197 ~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl--~~~~v~GGVWRi~~~ 262 (339)
T KOG0280|consen 197 IPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL--FKAKVGGGVWRIKHH 262 (339)
T ss_pred CCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc--ccCccccceEEEEec
Confidence 221 567778899988875 6689999999999999864 67776 444433444455554
No 311
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=93.27 E-value=1.7 Score=45.90 Aligned_cols=167 Identities=13% Similarity=0.054 Sum_probs=99.5
Q ss_pred CCceEEEEcCCCCcee----EEEecCCC-CCeEEEeecCCCe-EEEEEeCCeEEEEe-CCCCc--cccCCCCCccccccC
Q 003205 64 ALRKLRIFNSAGVLIS----ETVWKNPG-GRLIGMSWSEDQT-LICVVQDGTVYRYN-IHAEL--IEPNASMGKECFEEN 134 (839)
Q Consensus 64 ~~~~I~iy~~~G~ll~----ti~~~~~~-~~I~~~~fs~de~-Lv~v~~dGtv~l~~-~~G~~--~~~~~g~~~~~~~~~ 134 (839)
..+.|.+|-.++..=+ -+...... ..-.++.|++-+. +++..++|.+...+ ..+.+ .++..+| +..
T Consensus 93 a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~H-----e~E 167 (339)
T KOG0280|consen 93 ARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVH-----EFE 167 (339)
T ss_pred ccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccc-----cee
Confidence 4678888877664211 11111100 1236889998775 77888999998443 34444 4478888 566
Q ss_pred eEEEEEEC-CeEEEEecCCe-EEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCC-CCcEEEEEEeCCeEEEEecCCc
Q 003205 135 VVECVFWG-NGVVCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTM-TGSVEVLIGTDAGILMLDEDGV 211 (839)
Q Consensus 135 V~~~~~~~-~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~-~~~~~v~~s~d~tv~l~~~~~~ 211 (839)
.|.|+|.. +--++.|++-+ -..-+++..|....+.+ ...|...|.+...|| .+..+++.++|.+|.+||....
T Consensus 168 ~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n----~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 168 AWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN----SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred eeeeecccCCCceEEecCCCceEEEEEecCCcceeeec----ceeeecceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence 89999975 44566666433 22334443344222222 334444454433333 4667888889999999998854
Q ss_pred c-----cccCCCceEEEECCCCc--EEEEeecCCe
Q 003205 212 Q-----KVDDTLSQKMAVSPNGN--FVACFTHDGR 239 (839)
Q Consensus 212 ~-----~~~~~~i~~ia~Spng~--~iA~~~~~g~ 239 (839)
. ..-.|.|++|.-+|.-. .+|..-.+|-
T Consensus 244 ~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ 278 (339)
T KOG0280|consen 244 GKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGA 278 (339)
T ss_pred cCccccCccccceEEEEecchhhhHHHHHHHhcCc
Confidence 3 23347799999999754 2333334553
No 312
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.04 E-value=0.24 Score=37.80 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=29.5
Q ss_pred CCCceEEEECCCCcEEEEeecCCeEEEEecCCCC
Q 003205 216 DTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSS 249 (839)
Q Consensus 216 ~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~ 249 (839)
..+|..+++||+...||+++.+|.|+++..+..+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 4568999999999999999999999999776443
No 313
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.52 E-value=4.5 Score=45.43 Aligned_cols=144 Identities=14% Similarity=0.063 Sum_probs=79.3
Q ss_pred CCeEEEeecCCCeEEEEEe------------CC-eEEEE-eC--CCCccc-cCCCCCccccccCeEEEEEECCeEEEEec
Q 003205 88 GRLIGMSWSEDQTLICVVQ------------DG-TVYRY-NI--HAELIE-PNASMGKECFEENVVECVFWGNGVVCVTE 150 (839)
Q Consensus 88 ~~I~~~~fs~de~Lv~v~~------------dG-tv~l~-~~--~G~~~~-~~~g~~~~~~~~~V~~~~~~~~G~v~~t~ 150 (839)
...+.|.|.++|.|.++.. .| .|.++ +. +|+..+ +.+... -.....+.++++| ++++.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~----l~~p~Gi~~~~~G-lyV~~ 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE----LSMVTGLAVAVGG-VYVAT 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC----CCCccceeEecCC-EEEeC
Confidence 5678999999999876642 23 56666 33 465522 111111 1123556778899 77777
Q ss_pred CCeEEEEecCCCc-----eEEEcCC-CCCCCCCceEEEeCCCCCCCCcEEEEEEe-------------------CCeEEE
Q 003205 151 ANRYFCMADFATM-----KVCELAR-PEVEELPHCVAVIEPKYTMTGSVEVLIGT-------------------DAGILM 205 (839)
Q Consensus 151 ~~~~~~v~~~~~~-----~~~~l~~-~~~~~~~~~w~vi~~~~S~~~~~~v~~s~-------------------d~tv~l 205 (839)
..+++.+.+.++. ..+.+.+ .+.+............+.|||.+-+..+. .+.|+.
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence 7788877654321 2222322 11110101112333455668776665542 256788
Q ss_pred EecCCcc-----cccCCCceEEEECCCCcEEEEeecC
Q 003205 206 LDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHD 237 (839)
Q Consensus 206 ~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~ 237 (839)
++.++.. .+. ..-..++|+|+|++..+-+.+
T Consensus 169 ~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 169 YNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred EecCCCeEEEEecCc-CCCccceECCCCCEEEEccCC
Confidence 8877653 222 223589999999886654433
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.52 E-value=1 Score=53.34 Aligned_cols=132 Identities=18% Similarity=0.286 Sum_probs=88.3
Q ss_pred CCcEEEEEEeCCeEEEEecCCcccccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCcee---
Q 003205 190 TGSVEVLIGTDAGILMLDEDGVQKVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIA--- 266 (839)
Q Consensus 190 ~~~~~v~~s~d~tv~l~~~~~~~~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~--- 266 (839)
.+...++.+.+|.|++.+.+|... ..+..-+..-+|.++|+.+.||++.|.+-.-++..+.++.+. +++.++
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~~~---~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~r--piksial~P 122 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGNPK---TNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKR--PIKSIALHP 122 (846)
T ss_pred hcceeeeccccceEEEEecCCccc---ccccccccccCCceEEEecCCCcEEEeeccCCccceeEecCC--cceeEEecc
Confidence 667888888999999999888530 001111115579999999999999888765555555565542 333333
Q ss_pred ----------eecCce-EEEE---e-c--CEEEEEcCCCCceEeccCCCeEEeecCCceEEEccCcceeeeccchhh
Q 003205 267 ----------WCGMDS-VLLY---W-N--DMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPAST 326 (839)
Q Consensus 267 ----------WcG~d~-vv~~---~-~--~~l~lig~~~~~v~f~~~~~~~l~~E~DGvRIit~~~~~~l~~Vp~~~ 326 (839)
-.|.++ +|++ | + +.+.+-.-.|.-.+....+..++-+.-+||||++...-.-|..||...
T Consensus 123 d~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~ 199 (846)
T KOG2066|consen 123 DFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDGVKVYDTPTRQRLTNIPPPS 199 (846)
T ss_pred chhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCCcEEEeccccceeeccCCCC
Confidence 335555 6664 2 2 244333334443333337889999999999999999999999998765
No 315
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=92.22 E-value=16 Score=40.19 Aligned_cols=241 Identities=14% Similarity=0.153 Sum_probs=127.8
Q ss_pred EEEEcCCCCeEEEEec-CchhhhhhcccCCceEEEEcCCC-CceeEEEecCCCC-C------eEEEeecCCCeEEEEE--
Q 003205 37 KVACAPFGGPIAVIRD-DSKIVQLYAESALRKLRIFNSAG-VLISETVWKNPGG-R------LIGMSWSEDQTLICVV-- 105 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d-~~k~~~~~~~~~~~~I~iy~~~G-~ll~ti~~~~~~~-~------I~~~~fs~de~Lv~v~-- 105 (839)
.++.||+|+-|.++.- .++ ...+.....|.+|+..- .+...|.... + + ...+.+|.||+.+.|.
T Consensus 40 ~~~~spdgk~~y~a~T~~sR---~~rG~RtDvv~~~D~~TL~~~~EI~iP~--k~R~~~~~~~~~~~ls~dgk~~~V~N~ 114 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSR---GTRGERTDVVEIWDTQTLSPTGEIEIPP--KPRAQVVPYKNMFALSADGKFLYVQNF 114 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEE---TTEEEEEEEEEEEETTTTEEEEEEEETT--S-B--BS--GGGEEE-TTSSEEEEEEE
T ss_pred ceeECCCCCEEEEEEEEEec---cccccceeEEEEEecCcCcccceEecCC--cchheecccccceEEccCCcEEEEEcc
Confidence 4778999999998631 000 01123467899999765 4566666654 2 2 2345777888754333
Q ss_pred -eCCeEEEEeCCCC-cc-ccCCCCCccccccCeEEEEEEC---CeEEEEecCCeEEEEecC-CCceEEEcCCCCCC-CCC
Q 003205 106 -QDGTVYRYNIHAE-LI-EPNASMGKECFEENVVECVFWG---NGVVCVTEANRYFCMADF-ATMKVCELARPEVE-ELP 177 (839)
Q Consensus 106 -~dGtv~l~~~~G~-~~-~~~~g~~~~~~~~~V~~~~~~~---~G~v~~t~~~~~~~v~~~-~~~~~~~l~~~~~~-~~~ 177 (839)
--..|.|.|+..+ +. +...+ + ++-++| .|+..+.++|.+..|.-= ++...++-...... ..|
T Consensus 115 TPa~SVtVVDl~~~kvv~ei~~P--------G--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp 184 (342)
T PF06433_consen 115 TPATSVTVVDLAAKKVVGEIDTP--------G--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDP 184 (342)
T ss_dssp SSSEEEEEEETTTTEEEEEEEGT--------S--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-
T ss_pred CCCCeEEEEECCCCceeeeecCC--------C--EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcc
Confidence 3455777776533 32 22221 1 223333 788888888887655421 22111221111110 122
Q ss_pred ceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-------c--------c--cCCCceEEEECCCC-cEEEEeecCC-
Q 003205 178 HCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-------K--------V--DDTLSQKMAVSPNG-NFVACFTHDG- 238 (839)
Q Consensus 178 ~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-------~--------~--~~~~i~~ia~Spng-~~iA~~~~~g- 238 (839)
- +..|.++..+...+..+.+|.||-.+..|.. . . .++.+..+++.+.. ++-.+.. .|
T Consensus 185 ~---f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh-~g~ 260 (342)
T PF06433_consen 185 L---FEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMH-QGG 260 (342)
T ss_dssp B----S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEE-E--
T ss_pred c---ccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEec-CCC
Confidence 1 3455566677888889999999998888654 0 0 13457889998644 4444443 33
Q ss_pred ---------eEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCCceEeccCCCeEE--eecCCc
Q 003205 239 ---------RLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVL--IPECDG 307 (839)
Q Consensus 239 ---------~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~~~l--~~E~DG 307 (839)
.||+++..-.+.+.+..... .. .++.-+-|..+.| .+..||
T Consensus 261 ~gsHKdpgteVWv~D~~t~krv~Ri~l~~--~~--------------------------~Si~Vsqd~~P~L~~~~~~~~ 312 (342)
T PF06433_consen 261 EGSHKDPGTEVWVYDLKTHKRVARIPLEH--PI--------------------------DSIAVSQDDKPLLYALSAGDG 312 (342)
T ss_dssp TT-TTS-EEEEEEEETTTTEEEEEEEEEE--EE--------------------------SEEEEESSSS-EEEEEETTTT
T ss_pred CCCccCCceEEEEEECCCCeEEEEEeCCC--cc--------------------------ceEEEccCCCcEEEEEcCCCC
Confidence 38888776666665554331 01 1222223333332 345665
Q ss_pred -eEEEccCcceeeeccch
Q 003205 308 -VRILSNSSMEFLQRVPA 324 (839)
Q Consensus 308 -vRIit~~~~~~l~~Vp~ 324 (839)
+-|+....+++++++++
T Consensus 313 ~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 313 TLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEETTT--EEEEE--
T ss_pred eEEEEeCcCCcEEeehhc
Confidence 88888888888888864
No 316
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.06 E-value=9.9 Score=43.77 Aligned_cols=112 Identities=12% Similarity=0.111 Sum_probs=62.1
Q ss_pred EEEEEeCCeEEEEeC-CCCccccCC-C-CCccccccCeEEEEEEC--CeEEEEec-CCeEEEEecCCCceEEEcCCCCCC
Q 003205 101 LICVVQDGTVYRYNI-HAELIEPNA-S-MGKECFEENVVECVFWG--NGVVCVTE-ANRYFCMADFATMKVCELARPEVE 174 (839)
Q Consensus 101 Lv~v~~dGtv~l~~~-~G~~~~~~~-g-~~~~~~~~~V~~~~~~~--~G~v~~t~-~~~~~~v~~~~~~~~~~l~~~~~~ 174 (839)
+|.+...|.|.+|+. .|++..+.. + | ..+|. +..|. -|+..-.+ +.++ .++++.+.+..+.... ..
T Consensus 73 lvlgt~~g~v~~ys~~~g~it~~~st~~h-----~~~v~-~~~~~~~~~ciyS~~ad~~v-~~~~~~~~~~~~~~~~-~~ 144 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAGGEITAKLSTDKH-----YGNVN-EILDAQRLGCIYSVGADLKV-VYILEKEKVIIRIWKE-QK 144 (541)
T ss_pred EEeecCCccEEEEEecCCeEEEEEecCCC-----CCcce-eeecccccCceEecCCceeE-EEEecccceeeeeecc-CC
Confidence 578888999999974 566643333 2 3 33444 34444 33322222 2233 2344433333332210 00
Q ss_pred CCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCC
Q 003205 175 ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPN 227 (839)
Q Consensus 175 ~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spn 227 (839)
..+..- + .||||.+.+++ .++|++|+..... .+|.+||..++|--+
T Consensus 145 ~~~~sl-~----is~D~~~l~~a--s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 145 PLVSSL-C----ISPDGKILLTA--SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred CccceE-E----EcCCCCEEEec--cceEEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence 122222 2 34487776665 4589999988764 689999999998877
No 317
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.87 E-value=3.9 Score=49.80 Aligned_cols=77 Identities=18% Similarity=0.317 Sum_probs=47.6
Q ss_pred CCCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEE---EcCCCC-----c-e--eEEEec------CCCCCeEE
Q 003205 30 HIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRI---FNSAGV-----L-I--SETVWK------NPGGRLIG 92 (839)
Q Consensus 30 ~~~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~i---y~~~G~-----l-l--~ti~~~------~~~~~I~~ 92 (839)
...|....|.++|.|..+|+++... ++. +.+ |..+|. . + .+++.+ .....|..
T Consensus 82 ~~~f~v~~i~~n~~g~~lal~G~~~-v~V---------~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~q 151 (717)
T PF10168_consen 82 PPLFEVHQISLNPTGSLLALVGPRG-VVV---------LELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQ 151 (717)
T ss_pred CCceeEEEEEECCCCCEEEEEcCCc-EEE---------EEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEE
Confidence 3467788999999999999997532 211 112 222221 0 0 111111 10146777
Q ss_pred EeecCC----CeEEEEEeCCeEEEEeCC
Q 003205 93 MSWSED----QTLICVVQDGTVYRYNIH 116 (839)
Q Consensus 93 ~~fs~d----e~Lv~v~~dGtv~l~~~~ 116 (839)
+.|.|. .+|++.++|+++|+||+.
T Consensus 152 v~WhP~s~~~~~l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 152 VRWHPWSESDSHLVVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEcCCCCCCCeEEEEecCCEEEEEecC
Confidence 777764 479999999999999864
No 318
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.80 E-value=15 Score=43.40 Aligned_cols=279 Identities=10% Similarity=0.075 Sum_probs=142.3
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEE-EEEeCCeEE
Q 003205 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLI-CVVQDGTVY 111 (839)
Q Consensus 33 l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv-~v~~dGtv~ 111 (839)
...+.-.++..+..||+.. ..+.+.+||..|.....++.....+.++...-++++.+| .++..|.|-
T Consensus 34 ~~v~lTc~dst~~~l~~Gs------------S~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~ 101 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGS------------SAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVS 101 (726)
T ss_pred ceEEEEEeecCCceEEEec------------ccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEE
Confidence 3445667888888999986 579999999999988887763322778889999999985 777788888
Q ss_pred EEeCC----CCccccCCCCCccccccCeEEEEEECCeEEEEecCC--eEEEEecCCCceEEEcCCCCCCCCCceEEEeCC
Q 003205 112 RYNIH----AELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN--RYFCMADFATMKVCELARPEVEELPHCVAVIEP 185 (839)
Q Consensus 112 l~~~~----G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~--~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~ 185 (839)
+|-++ +.+..+...+..- ...|..+..+.||.-+..++. .+..+. ++.......+...+-..+.+ |+.-
T Consensus 102 v~ql~~~~p~~~~~~t~~d~~~--~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~-L~s~~~~~~~~q~il~~ds~--IVQl 176 (726)
T KOG3621|consen 102 VFQLNKELPRDLDYVTPCDKSH--KCRVTALEWSKNGMKLYSGDSQGKVVLTE-LDSRQAFLSKSQEILSEDSE--IVQL 176 (726)
T ss_pred eehhhccCCCcceeeccccccC--CceEEEEEecccccEEeecCCCceEEEEE-echhhhhccccceeeccCcc--eEEe
Confidence 77332 2232222222100 233544444459999999864 444332 21101011111000011111 1111
Q ss_pred CCCCCCcEEEEEEeCCeEEEEecCCc-------c-cccCCCceEEEECC----CCcEEEEeecCCeEEEEecCCCCcccc
Q 003205 186 KYTMTGSVEVLIGTDAGILMLDEDGV-------Q-KVDDTLSQKMAVSP----NGNFVACFTHDGRLVVNNTNFSSPVID 253 (839)
Q Consensus 186 ~~S~~~~~~v~~s~d~tv~l~~~~~~-------~-~~~~~~i~~ia~Sp----ng~~iA~~~~~g~i~i~ssd~~~~l~e 253 (839)
+ .-+..+++++--.-.+++.+.. + +...+++-+.-|-- +--+|.++-..+.+|-.+-+ +.++.+
T Consensus 177 D---~~q~~LLVStl~r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~-G~V~~T 252 (726)
T KOG3621|consen 177 D---YLQSYLLVSTLTRCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFA-GEVIKT 252 (726)
T ss_pred e---cccceehHhhhhhhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeecc-eeEEEe
Confidence 1 1122233332111123333311 1 12222443333321 22345554444455544332 455544
Q ss_pred ccCCC-----------------------CCCCCceee-----ecCceEEEEecC-EEEEEcCCCCceEecc--CCCeEEe
Q 003205 254 ESCES-----------------------ALPPEQIAW-----CGMDSVLLYWND-MLVMVAPQAEPVQYFY--DEPLVLI 302 (839)
Q Consensus 254 ~~~~~-----------------------~~~p~~~~W-----cG~d~vv~~~~~-~l~lig~~~~~v~f~~--~~~~~l~ 302 (839)
|.... ...+..+.. -.+| -++.|++ .++++-+....|.-|- ++++.-+
T Consensus 253 hqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~-~vLa~te~Giyv~d~~~~~v~l~se~~~DI~dV 331 (726)
T KOG3621|consen 253 HQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSD-RVLAWTEVGIYVFDSNNSQVYLWSEGGHDILDV 331 (726)
T ss_pred eehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecc-eEEEeecceEEEEEeccceEEEeecCCCceeEE
Confidence 43210 000111111 1233 4677876 6778887777555554 3556655
Q ss_pred ecCCc-eEEEccCc---ceeeeccchhhHhhhccC
Q 003205 303 PECDG-VRILSNSS---MEFLQRVPASTEQIFAIG 333 (839)
Q Consensus 303 ~E~DG-vRIit~~~---~~~l~~Vp~~~~~vf~ig 333 (839)
+-.+. |-+++.++ +.-+.+++.+.++..+-|
T Consensus 332 s~~~neiFvL~~d~~l~~~sv~s~qr~l~~l~~~G 366 (726)
T KOG3621|consen 332 SHCGNEIFVLNLDRGLKVESVASRQRKLESLCRCG 366 (726)
T ss_pred eecCceEEEEecCCceeEEEeehhHHHHHHHHhhc
Confidence 55554 77777775 555667777776655544
No 319
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.55 E-value=7.1 Score=46.75 Aligned_cols=261 Identities=19% Similarity=0.199 Sum_probs=138.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhCCChhhHHHHhHhhhh-hhcCCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcH
Q 003205 441 SVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACSKI-TASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRR 519 (839)
Q Consensus 441 ~~li~rL~~r~~~~lA~~I~~~l~~~~~~I~~~WA~~kI-~~~~~~~D~~l~~~I~~kl~~~~~is~~~IA~~A~~~gR~ 519 (839)
+.-+..|+.-++|.-|++||.-=|++...=+ |--.- .+. ++..++--..|. ..||....+.|-.
T Consensus 1097 ekAV~lL~~ar~~~~AlqlC~~~nv~vtee~---aE~mTp~Kd-~~~~e~~R~~vL-----------eqvae~c~qQG~Y 1161 (1416)
T KOG3617|consen 1097 EKAVNLLCLAREFSGALQLCKNRNVRVTEEF---AELMTPTKD-DMPNEQERKQVL-----------EQVAELCLQQGAY 1161 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhHHH---HHhcCcCcC-CCccHHHHHHHH-----------HHHHHHHHhccch
Confidence 4467889999999999999997777643322 22110 111 222333333332 3458888899999
Q ss_pred HHHHHHHhcCCCCCCchhhhhccCchHHHHHHHHHcCCchHHHHHHHHHHhh---CChhHHHHHH--hcChhHHHHHHHH
Q 003205 520 KLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQK---RPALEFFGMI--QTRPLACDLFTVY 594 (839)
Q Consensus 520 ~LA~~Ll~~E~~~~~qV~lLl~~~~~~~AL~~Ai~S~D~dLI~~vll~l~~~---l~~~~f~~~l--~~~p~a~~~~~~y 594 (839)
++|++= +-.-|+-=.|.+.-++|||++=|...----+++ .-...|++.| +++|....+.+.|
T Consensus 1162 h~AtKK-------------fTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tF 1228 (1416)
T KOG3617|consen 1162 HAATKK-------------FTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETF 1228 (1416)
T ss_pred HHHHHH-------------HhhhhhHHHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhh
Confidence 998862 223455567888889999999764321111111 0112333333 2345555555554
Q ss_pred H-HhcCHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHhhhhhc--cccc-hHHHHHHHH
Q 003205 595 A-RCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEKAHSLFSET--KEHT-FESKAAEEH 670 (839)
Q Consensus 595 ~-~~~~~~~L~~~~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~~~~~~~k~~~L~~a~~~~~~~--~~~~-f~~~~~~~~ 670 (839)
+ +-+..+.|-+||.. .|.+.+.+. + +.+ .-+..|+.|.++..+. |++. ..-.++++-
T Consensus 1229 YTKgqafd~LanFY~~------cAqiEiee~-q--~yd----------Ka~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~ 1289 (1416)
T KOG3617|consen 1229 YTKGQAFDHLANFYKS------CAQIEIEEL-Q--TYD----------KAMGALEEAAKCLLKAEQKNMSTTGLDALQED 1289 (1416)
T ss_pred hhcchhHHHHHHHHHH------HHHhhHHHH-h--hhh----------HHhHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 4 34455555565542 222222221 1 111 2356788888877653 2322 222334444
Q ss_pred HHHHHHHHHHHhhhccccccCCCHHHHHHHHHHcCCcchHHhHHhHcCCChHHHHHHHHHHHHhCCChhHHHHhhcc--C
Q 003205 671 AKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKE--K 748 (839)
Q Consensus 671 ~~Ll~~Q~~Le~~~~~~~f~~~Sl~~ti~~l~~~~~~k~a~~l~k~fkvsdkr~~~~kl~ala~~~~w~~L~~f~~~--K 748 (839)
+++.+.|.+....+.. -..+.|++|-.+-..-.. +=-|+--+.+-+-|+.++..++|..-.++.++ |
T Consensus 1290 ~a~vk~~l~~~q~~~e------D~~~~i~qc~~lleep~l-----d~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~ 1358 (1416)
T KOG3617|consen 1290 LAKVKVQLRKLQIMKE------DAADGIRQCTTLLEEPIL-----DDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQK 1358 (1416)
T ss_pred HHHHHHHHHHHHHhhh------hHHHHHHHHHHHhhCcCC-----CCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhh
Confidence 4444444433332221 123344544332111000 01144566778889999999999999999865 4
Q ss_pred C-CCCCchHHHH
Q 003205 749 R-PPIGYRPFVE 759 (839)
Q Consensus 749 K-spIgyepfv~ 759 (839)
| |....+-||+
T Consensus 1359 k~p~~~~s~~v~ 1370 (1416)
T KOG3617|consen 1359 KVPNVDLSTFVE 1370 (1416)
T ss_pred cCCccchhcccc
Confidence 4 4445554544
No 320
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=91.53 E-value=1.3 Score=53.88 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=52.7
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeE-EEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEe
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISE-TVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYN 114 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~t-i~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~ 114 (839)
+..+++...|.||+++ .+|.||+|+.-|+-=.| |+.-+ .+|+++.-|.||+.++++-+.-+.|++
T Consensus 580 Fs~~aTt~~G~iavgs------------~~G~IRLyd~~g~~AKT~lp~lG--~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 580 FSCFATTEDGYIAVGS------------NKGDIRLYDRLGKRAKTALPGLG--DPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred ceEEEecCCceEEEEe------------CCCcEEeecccchhhhhcCCCCC--CCeeEEEecCCCcEEEEeecceEEEEE
Confidence 4556777788999997 68999999998865333 55444 799999999999999999988888886
No 321
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.49 E-value=35 Score=42.21 Aligned_cols=261 Identities=15% Similarity=0.132 Sum_probs=144.9
Q ss_pred HcCCchHHHHHHH-HHHhhCChhHHHHHH----hcC------hhHHHHHHHHHHhcCHHHHHHHHHhcCChh--HHHHHH
Q 003205 554 ESGDTDLVYLVIF-HIWQKRPALEFFGMI----QTR------PLACDLFTVYARCYKHEFLKDFFLSTGQLQ--EVAFLL 620 (839)
Q Consensus 554 ~S~D~dLI~~vll-~l~~~l~~~~f~~~l----~~~------p~a~~~~~~y~~~~~~~~L~~~~~~~~~~~--e~a~~~ 620 (839)
++.||+-|-.++- +|..-|+. +...+| .++ -...++++.-+-..|+.-..+|-...|+|. +.|.+.
T Consensus 980 E~~dPe~vS~tVkAfMtadLp~-eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~ia 1058 (1666)
T KOG0985|consen 980 ETQDPEEVSVTVKAFMTADLPN-ELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIA 1058 (1666)
T ss_pred ccCChHHHHHHHHHHHhcCCcH-HHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHH
Confidence 4557776655553 45555543 333333 222 234556665555677788888888877765 455555
Q ss_pred HHHHHhcCCCC----CCCCCCCCc--chHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHhhhccccccCCCH
Q 003205 621 WKESWELGKNP----MASNGSALH--GPRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSI 694 (839)
Q Consensus 621 l~~~~~~~~~~----~~~~~~~~~--~~k~~~L~~a~~~~~~~~~~~f~~~~~~~~~~Ll~~Q~~Le~~~~~~~f~~~Sl 694 (839)
+...+.++... ...+++..+ .+-+..|..|.+.-.+..+...+++....|..=...-..++.-.+.. .-.+.
T Consensus 1059 i~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikad--Dps~y 1136 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKAD--DPSNY 1136 (1666)
T ss_pred hhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcC--CcHHH
Confidence 54433222100 000000000 01112333343322222333455555444432222222222211100 01234
Q ss_pred HHHHHHHHHcCCcchHHh----HHhHcCCChHHHHHHHHHHHHhCCChhHHHHhhccCCCCCCchHHHHHHHhcCCHHHH
Q 003205 695 SDTIRTCIVLGNHRAAMK----VKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEA 770 (839)
Q Consensus 695 ~~ti~~l~~~~~~k~a~~----l~k~fkvsdkr~~~~kl~ala~~~~w~~L~~f~~~KKspIgyepfv~~~~~~~~~~ea 770 (839)
.+.|..+-+.|.+++.-+ -+| |+-|....---|-|||+.++-.|||.|+.. -..-....+=+.|.+.+..+-|
T Consensus 1137 ~eVi~~a~~~~~~edLv~yL~MaRk--k~~E~~id~eLi~AyAkt~rl~elE~fi~g-pN~A~i~~vGdrcf~~~~y~aA 1213 (1666)
T KOG0985|consen 1137 LEVIDVASRTGKYEDLVKYLLMARK--KVREPYIDSELIFAYAKTNRLTELEEFIAG-PNVANIQQVGDRCFEEKMYEAA 1213 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHH--hhcCccchHHHHHHHHHhchHHHHHHHhcC-CCchhHHHHhHHHhhhhhhHHH
Confidence 556666666665543111 122 222333344456799999999999999852 2222344567889998888888
Q ss_pred HHhhccCCCHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHHhcCCh
Q 003205 771 LKYIPKLVDPRERAEAYARIGMAKEAADAASQAKDGELLGRLKLTFAQNA 820 (839)
Q Consensus 771 ~~yI~~i~d~~~r~~~~~~~~~~~~A~~~a~~~kd~~~L~~i~~~~~~~~ 820 (839)
+-.-+.+++-.+-.--++.+|.|..|++.|.+......-+++-..|-+..
T Consensus 1214 kl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1214 KLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKE 1263 (1666)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchh
Confidence 88888888888888889999999999999999998888888877775543
No 322
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=91.47 E-value=2.2 Score=38.84 Aligned_cols=88 Identities=17% Similarity=0.290 Sum_probs=62.3
Q ss_pred CCCCCcEEEEEEe-CCeEEEEecCCcc--cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCC
Q 003205 187 YTMTGSVEVLIGT-DAGILMLDEDGVQ--KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPE 263 (839)
Q Consensus 187 ~S~~~~~~v~~s~-d~tv~l~~~~~~~--~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~ 263 (839)
|.-||..+++++. |..|.+++.+... ......++.++-.+.+ ..|.+..+|||-++.. ...+ +...++..|.
T Consensus 10 ~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~~-~F~Y~l~NGTVGvY~~--~~Rl--WRiKSK~~~~ 84 (111)
T PF14783_consen 10 FDGDGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGGG-RFAYALANGTVGVYDR--SQRL--WRIKSKNQVT 84 (111)
T ss_pred cCCCCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCCC-EEEEEecCCEEEEEeC--ccee--eeeccCCCeE
Confidence 4446666666654 8899999988765 4556778888888876 5677778999999854 2223 3334556799
Q ss_pred ceeeecCc-----eEEEEecC
Q 003205 264 QIAWCGMD-----SVLLYWND 279 (839)
Q Consensus 264 ~~~WcG~d-----~vv~~~~~ 279 (839)
.|.++.-+ -+++-|.+
T Consensus 85 ~~~~~D~~gdG~~eLI~Gwsn 105 (111)
T PF14783_consen 85 SMAFYDINGDGVPELIVGWSN 105 (111)
T ss_pred EEEEEcCCCCCceEEEEEecC
Confidence 99998544 57788876
No 323
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.42 E-value=22 Score=37.71 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=57.6
Q ss_pred EEeCCCCCCCCcEEEEEEeCCeEEEEe--cCCcc------cccC-CCceEEEECCCCcEEEEeec---CCeEEEEe--cC
Q 003205 181 AVIEPKYTMTGSVEVLIGTDAGILMLD--EDGVQ------KVDD-TLSQKMAVSPNGNFVACFTH---DGRLVVNN--TN 246 (839)
Q Consensus 181 ~vi~~~~S~~~~~~v~~s~d~tv~l~~--~~~~~------~~~~-~~i~~ia~Spng~~iA~~~~---~g~i~i~s--sd 246 (839)
.+..|.|+++|.+.+....++...++. .++.. .... ++|..+.+||||..+|+... .+.++|.. .+
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 345667777866666555555444442 23321 1112 28999999999999999984 35677753 12
Q ss_pred -CC--Cccc---cccCCCCCCCCceeeecCceEEEEe
Q 003205 247 -FS--SPVI---DESCESALPPEQIAWCGMDSVLLYW 277 (839)
Q Consensus 247 -~~--~~l~---e~~~~~~~~p~~~~WcG~d~vv~~~ 277 (839)
-+ ..+. +........+.++.|++++++++.=
T Consensus 147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~ 183 (253)
T PF10647_consen 147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLG 183 (253)
T ss_pred CCCCcceeccceEecccccCcceeeeecCCCEEEEEe
Confidence 12 1111 1111112356799999999887754
No 324
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=91.09 E-value=31 Score=38.95 Aligned_cols=97 Identities=11% Similarity=0.087 Sum_probs=52.5
Q ss_pred CCceEEEEcC-CCCceeEEEecCCCCCeEE------Eeec---CCCeEEEEEeCCeEEEEeC-CCCcc-ccCCCCCcccc
Q 003205 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIG------MSWS---EDQTLICVVQDGTVYRYNI-HAELI-EPNASMGKECF 131 (839)
Q Consensus 64 ~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~------~~fs---~de~Lv~v~~dGtv~l~~~-~G~~~-~~~~g~~~~~~ 131 (839)
.++.+.-++. +|+.+++...... ..+.. +.-+ .++.+++...+|.++-+|. .|+.. ++..+.
T Consensus 77 ~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~----- 150 (394)
T PRK11138 77 RAGLVKALDADTGKEIWSVDLSEK-DGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG----- 150 (394)
T ss_pred CCCeEEEEECCCCcEeeEEcCCCc-ccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC-----
Confidence 3577888885 6998888765431 11110 1111 2567778888999888885 68862 222222
Q ss_pred ccCeEE-EEEECCeEEEEecCCeEEEEecCCCceEEEc
Q 003205 132 EENVVE-CVFWGNGVVCVTEANRYFCMADFATMKVCEL 168 (839)
Q Consensus 132 ~~~V~~-~~~~~~G~v~~t~~~~~~~v~~~~~~~~~~l 168 (839)
.+.. ..+.++-+++.+.++.++.++--.+...+..
T Consensus 151 --~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 186 (394)
T PRK11138 151 --EALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTV 186 (394)
T ss_pred --ceecCCEEECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 1121 1223333344445667777764444444444
No 325
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=90.96 E-value=3.2 Score=43.97 Aligned_cols=62 Identities=10% Similarity=0.041 Sum_probs=41.8
Q ss_pred CCCCCCcEEE-EEEeCCeEEEEecCCc-----c----------------cccCCCceEEEECCCCcEEEEeecCCeEEEE
Q 003205 186 KYTMTGSVEV-LIGTDAGILMLDEDGV-----Q----------------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVN 243 (839)
Q Consensus 186 ~~S~~~~~~v-~~s~d~tv~l~~~~~~-----~----------------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ 243 (839)
.|+|...... +.+..|+|.+.|.... . ......|+.+.|||||++|+.-. -.+++||
T Consensus 228 eFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiw 306 (460)
T COG5170 228 EFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIW 306 (460)
T ss_pred ccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEE
Confidence 3777665444 4445888988887621 1 12235688999999999998844 3589999
Q ss_pred ecCCC
Q 003205 244 NTNFS 248 (839)
Q Consensus 244 ssd~~ 248 (839)
+-...
T Consensus 307 Dvnm~ 311 (460)
T COG5170 307 DVNMA 311 (460)
T ss_pred ecccc
Confidence 86643
No 326
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.84 E-value=19 Score=40.94 Aligned_cols=201 Identities=16% Similarity=0.287 Sum_probs=108.3
Q ss_pred EeeccccccccCCCCCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEec-CCCCCeEEEee
Q 003205 17 YYRKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWK-NPGGRLIGMSW 95 (839)
Q Consensus 17 ~yr~~e~y~m~w~~~~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~-~~~~~I~~~~f 95 (839)
.|+...+|+-. ....-+...+.|+||.-. || .+-+ .+.|+++.||+.++.....+--+ -.||++. |
T Consensus 116 ~~~L~~~yeh~---l~~~a~nm~~G~Fgg~~~--~~---~IcV--QS~DG~L~~feqe~~~f~~~lp~~llPgPl~---Y 182 (418)
T PF14727_consen 116 QYQLELIYEHS---LQRTAYNMCCGPFGGVKG--RD---FICV--QSMDGSLSFFEQESFAFSRFLPDFLLPGPLC---Y 182 (418)
T ss_pred EEEEEEEEEEe---cccceeEEEEEECCCCCC--ce---EEEE--EecCceEEEEeCCcEEEEEEcCCCCCCcCeE---E
Confidence 34444555422 233456777888888431 11 0001 24699999999888775543222 1236655 6
Q ss_pred cCC-CeEEEEEeCCeEEEEeCC-----C----------------Ccc----ccCCCCCccccccCeEEEEE---E-CCeE
Q 003205 96 SED-QTLICVVQDGTVYRYNIH-----A----------------ELI----EPNASMGKECFEENVVECVF---W-GNGV 145 (839)
Q Consensus 96 s~d-e~Lv~v~~dGtv~l~~~~-----G----------------~~~----~~~~g~~~~~~~~~V~~~~~---~-~~G~ 145 (839)
.+. +.+++++++.++.-|... . +-. ++.+ -+.|.++.+ . ....
T Consensus 183 ~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-------GE~~l~i~v~~~~~~~~~ 255 (418)
T PF14727_consen 183 CPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-------GEQALDIQVVRFSSSESD 255 (418)
T ss_pred eecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-------CceeEEEEEEEcCCCCce
Confidence 664 458899999999999542 0 000 1122 233444433 2 2445
Q ss_pred EEEecCCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCC--CCCCCCc-EEEEEEeCCeEEEEecCCcc---cccCCCc
Q 003205 146 VCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEP--KYTMTGS-VEVLIGTDAGILMLDEDGVQ---KVDDTLS 219 (839)
Q Consensus 146 v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~--~~S~~~~-~~v~~s~d~tv~l~~~~~~~---~~~~~~i 219 (839)
+++.+..+++.++.- ..++-... ++-.|.|.++-.. ...++.. ..++++.++++.++...... .....||
T Consensus 256 IvvLger~Lf~l~~~--G~l~~~kr--Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~~~PV 331 (418)
T PF14727_consen 256 IVVLGERSLFCLKDN--GSLRFQKR--LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLPHVPV 331 (418)
T ss_pred EEEEecceEEEEcCC--CeEEEEEe--cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCCCCCE
Confidence 666667777777652 22222111 2356777765322 3333322 45556667777666544332 3344454
Q ss_pred eEEEECC----CCcEEEEeecCCeEEEE
Q 003205 220 QKMAVSP----NGNFVACFTHDGRLVVN 243 (839)
Q Consensus 220 ~~ia~Sp----ng~~iA~~~~~g~i~i~ 243 (839)
+|.+.. +| .|++.+.+|+|.+.
T Consensus 332 -al~v~~~~~~~G-~IV~Ls~~G~L~v~ 357 (418)
T PF14727_consen 332 -ALSVANFNGLKG-LIVSLSDEGQLSVS 357 (418)
T ss_pred -EEEecccCCCCc-eEEEEcCCCcEEEE
Confidence 444443 44 78888888887764
No 327
>PRK13616 lipoprotein LpqB; Provisional
Probab=90.82 E-value=18 Score=43.38 Aligned_cols=188 Identities=15% Similarity=0.124 Sum_probs=96.0
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeC-CeEEEE
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQD-GTVYRY 113 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~d-Gtv~l~ 113 (839)
...++||+|+.||....+.. ........|.+++..|.. ..+. .. .....-.|+|||. +.++.+. ..+++.
T Consensus 353 sspaiSpdG~~vA~v~~~~~----~~~d~~s~Lwv~~~gg~~-~~lt-~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 353 TSAALSRSGRQVAAVVTLGR----GAPDPASSLWVGPLGGVA-VQVL-EG--HSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred ccceECCCCCEEEEEEeecC----CCCCcceEEEEEeCCCcc-eeee-cC--CCCCCceECCCCCceEEEecCcceEEEe
Confidence 47789999999999873210 111234567777765554 3332 22 3477788999966 5555432 123333
Q ss_pred eC--CCCccccCCC-CCcc-ccccCeEEEEEECCeEEEE-ecCCeEEE---EecCCCceEEEcCC-----CCCCCCC--c
Q 003205 114 NI--HAELIEPNAS-MGKE-CFEENVVECVFWGNGVVCV-TEANRYFC---MADFATMKVCELAR-----PEVEELP--H 178 (839)
Q Consensus 114 ~~--~G~~~~~~~g-~~~~-~~~~~V~~~~~~~~G~v~~-t~~~~~~~---v~~~~~~~~~~l~~-----~~~~~~~--~ 178 (839)
+- .|++...... .+.. .+...|.+.++++||.-++ ...++++. +.+-.+. ..+.+ +.++..+ -
T Consensus 425 ~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 425 RDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ--YALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred ccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc--eeecccEEeecccCCccccc
Confidence 21 2222111110 0000 0134688999999998543 34677765 4432222 23321 1121211 2
Q ss_pred eEEEeCCCCCCCCcEEEEEEe-CCeEEEEecCCcc--c-cc---CCCceEEEECCCCcEEEEeecCCeEEE
Q 003205 179 CVAVIEPKYTMTGSVEVLIGT-DAGILMLDEDGVQ--K-VD---DTLSQKMAVSPNGNFVACFTHDGRLVV 242 (839)
Q Consensus 179 ~w~vi~~~~S~~~~~~v~~s~-d~tv~l~~~~~~~--~-~~---~~~i~~ia~Spng~~iA~~~~~g~i~i 242 (839)
.|. .++.+.+.... +..++.++.+|.. . .. ..++..|+-+|+ ... ..+.+|.+++
T Consensus 503 ~W~-------~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~iy-v~~~~g~~~l 564 (591)
T PRK13616 503 DWR-------TGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-TVY-VTDARAVLQL 564 (591)
T ss_pred eEe-------cCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-eEE-EEcCCceEEe
Confidence 243 36664433222 4567888888875 1 22 566788888874 333 3344554444
No 328
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=90.52 E-value=0.6 Score=35.61 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=28.2
Q ss_pred CCeEEEeecCCCeE-EEEEeCCeEEEEeCCCCc
Q 003205 88 GRLIGMSWSEDQTL-ICVVQDGTVYRYNIHAEL 119 (839)
Q Consensus 88 ~~I~~~~fs~de~L-v~v~~dGtv~l~~~~G~~ 119 (839)
.+|..+.|+|...| ++++.||.|.+|.++|+-
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 67999999999886 699999999999887753
No 329
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.45 E-value=25 Score=38.29 Aligned_cols=166 Identities=12% Similarity=0.153 Sum_probs=79.4
Q ss_pred ceEEEEcCCCCceeE---------EEecCCCCCeEEEeecCCCeEEEEEeCCeEEE-EeCCCC-ccccCCCCCccccccC
Q 003205 66 RKLRIFNSAGVLISE---------TVWKNPGGRLIGMSWSEDQTLICVVQDGTVYR-YNIHAE-LIEPNASMGKECFEEN 134 (839)
Q Consensus 66 ~~I~iy~~~G~ll~t---------i~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l-~~~~G~-~~~~~~g~~~~~~~~~ 134 (839)
+.+.+.+..|....| +.-.. .+.+.++.-++|+.+|.|+..|.+.+ |+.-.. ...+.... ...
T Consensus 115 ~~~~l~~~~G~iy~T~DgG~tW~~~~~~~-~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~-----~~r 188 (302)
T PF14870_consen 115 GSAELAGDRGAIYRTTDGGKTWQAVVSET-SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNS-----SRR 188 (302)
T ss_dssp TEEEEEETT--EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--S-----SS-
T ss_pred CcEEEEcCCCcEEEeCCCCCCeeEcccCC-cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCc-----cce
Confidence 344455555555544 22222 37788999999999999999998764 444333 34444443 567
Q ss_pred eEEEEEECCeEEEEec-CCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-
Q 003205 135 VVECVFWGNGVVCVTE-ANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ- 212 (839)
Q Consensus 135 V~~~~~~~~G~v~~t~-~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~- 212 (839)
|..+-|.++|-+.+.. .+.++.-+.-. ....+..+..+.....|.++...|.+++..-+ ++-+|++++-.-.|..
T Consensus 189 iq~~gf~~~~~lw~~~~Gg~~~~s~~~~--~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa-~gg~G~l~~S~DgGktW 265 (302)
T PF14870_consen 189 IQSMGFSPDGNLWMLARGGQIQFSDDPD--DGETWSEPIIPIKTNGYGILDLAYRPPNEIWA-VGGSGTLLVSTDGGKTW 265 (302)
T ss_dssp EEEEEE-TTS-EEEEETTTEEEEEE-TT--EEEEE---B-TTSS--S-EEEEEESSSS-EEE-EESTT-EEEESSTTSS-
T ss_pred ehhceecCCCCEEEEeCCcEEEEccCCC--CccccccccCCcccCceeeEEEEecCCCCEEE-EeCCccEEEeCCCCccc
Confidence 8999999876665444 45555444122 22222221111224556677667776654443 5556666554444554
Q ss_pred ----cc--cCCCceEEEECCCCcEEEEeecCCeEE
Q 003205 213 ----KV--DDTLSQKMAVSPNGNFVACFTHDGRLV 241 (839)
Q Consensus 213 ----~~--~~~~i~~ia~Spng~~iA~~~~~g~i~ 241 (839)
.. -...+.+|.|.++.+-.|++ ++|.|.
T Consensus 266 ~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll 299 (302)
T PF14870_consen 266 QKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLL 299 (302)
T ss_dssp EE-GGGTTSSS---EEEEEETTEEEEE--STTEEE
T ss_pred eECccccCCCCceEEEEEcCCCceEEEC-CCcEEE
Confidence 12 24458889887776666664 577754
No 330
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=90.40 E-value=5.2 Score=43.92 Aligned_cols=167 Identities=13% Similarity=0.164 Sum_probs=92.0
Q ss_pred ceEEEEcC-CCCceeEEEecCCCCCeEEE---eecCC----CeE-EEEEe---------C-CeEEEEeCCC------Ccc
Q 003205 66 RKLRIFNS-AGVLISETVWKNPGGRLIGM---SWSED----QTL-ICVVQ---------D-GTVYRYNIHA------ELI 120 (839)
Q Consensus 66 ~~I~iy~~-~G~ll~ti~~~~~~~~I~~~---~fs~d----e~L-v~v~~---------d-Gtv~l~~~~G------~~~ 120 (839)
..|++++. +.+.+.++..+. ...+.++ .|..+ .++ ++++. . |.+.+|++.. ++
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l- 79 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL- 79 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE-
T ss_pred cEEEEEeCCCCeEEEEEECCC-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE-
Confidence 35889997 677899998887 3445544 44432 344 44443 2 8899997654 22
Q ss_pred ccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCce-EEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe
Q 003205 121 EPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMK-VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT 199 (839)
Q Consensus 121 ~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~-~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~ 199 (839)
+... +.+ .+..|..+.-+ +|.+++..+..++ +.++.... ....+... ......++.. -++.++..+.
T Consensus 80 ~~i~--~~~-~~g~V~ai~~~-~~~lv~~~g~~l~-v~~l~~~~~l~~~~~~~--~~~~i~sl~~-----~~~~I~vgD~ 147 (321)
T PF03178_consen 80 KLIH--STE-VKGPVTAICSF-NGRLVVAVGNKLY-VYDLDNSKTLLKKAFYD--SPFYITSLSV-----FKNYILVGDA 147 (321)
T ss_dssp EEEE--EEE-ESS-EEEEEEE-TTEEEEEETTEEE-EEEEETTSSEEEEEEE---BSSSEEEEEE-----ETTEEEEEES
T ss_pred EEEE--EEe-ecCcceEhhhh-CCEEEEeecCEEE-EEEccCcccchhhheec--ceEEEEEEec-----cccEEEEEEc
Confidence 1111 111 15567777777 4445555555543 22222222 33332211 1122222211 4567777777
Q ss_pred CCeEEEE--ecCCcc------cccCCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 200 DAGILML--DEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 200 d~tv~l~--~~~~~~------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
-+.+.++ +.++.. .....++.++.|-+|++.++.+..+|+++++.-+
T Consensus 148 ~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 148 MKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 6666655 665543 1234457888888788888888999999998754
No 331
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=90.39 E-value=5.7 Score=45.43 Aligned_cols=131 Identities=13% Similarity=0.139 Sum_probs=85.0
Q ss_pred EEEEECCeEEEEecCCeEEEEecCCC-ceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe-----------CCeEE
Q 003205 137 ECVFWGNGVVCVTEANRYFCMADFAT-MKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-----------DAGIL 204 (839)
Q Consensus 137 ~~~~~~~G~v~~t~~~~~~~v~~~~~-~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~-----------d~tv~ 204 (839)
-++++|-|.-++|.-.+-+.+|+-++ .+.++++. |. |--..|||....+|+.+. +..+.
T Consensus 215 yv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~H------p~---Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYH------PG---VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred eEEecCCceEEEEEeccceeeecCccHHHHHhccC------CC---ceeeecCCccceEEEecCCccccCcccCCCceEE
Confidence 46888999999998766666776432 23444442 22 222368889998888773 25788
Q ss_pred EEecCC-cc----c---ccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEE
Q 003205 205 MLDEDG-VQ----K---VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLY 276 (839)
Q Consensus 205 l~~~~~-~~----~---~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~ 276 (839)
+||... .. . ...-.|.-...|.|++++|.++.+ .|.|+.+- +=-+.+-..-.....+++.||-.+.++.+
T Consensus 286 IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtp-sf~lld~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 286 IWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETP-SFMLLDKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred EEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecC-ceeeecccccCCccccCcccCCCcceEEE
Confidence 999764 32 1 222335667899999999999985 56677643 11121211111345689999988899999
Q ss_pred ec
Q 003205 277 WN 278 (839)
Q Consensus 277 ~~ 278 (839)
|-
T Consensus 364 wt 365 (698)
T KOG2314|consen 364 WT 365 (698)
T ss_pred Ec
Confidence 94
No 332
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=90.37 E-value=3.4 Score=46.47 Aligned_cols=154 Identities=18% Similarity=0.112 Sum_probs=93.1
Q ss_pred ceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeC-CCCc-cccCCCCCccccccCeEEEEEEC--CeEEEEec-
Q 003205 77 LISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNI-HAEL-IEPNASMGKECFEENVVECVFWG--NGVVCVTE- 150 (839)
Q Consensus 77 ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~-~G~~-~~~~~g~~~~~~~~~V~~~~~~~--~G~v~~t~- 150 (839)
+...+..|. |-|..+.|...|. |++.++|-+|.+|++ .|.. +.|.-|| -..|-.++|-| +-..+++.
T Consensus 134 l~~kL~~H~--GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH-----~~NvfQaKFiP~s~d~ti~~~s 206 (559)
T KOG1334|consen 134 LQKKLNKHK--GCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGH-----CNNVFQAKFIPFSGDRTIVTSS 206 (559)
T ss_pred hhhcccCCC--CccceeeecccCceeeccCccceEEeehhhccCccccccccc-----ccchhhhhccCCCCCcCceecc
Confidence 445566677 9999999999997 689999999999996 4554 7788888 66777888866 22334443
Q ss_pred -CCeEEEEecCC-Cc---eEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc--------cccCC
Q 003205 151 -ANRYFCMADFA-TM---KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--------KVDDT 217 (839)
Q Consensus 151 -~~~~~~v~~~~-~~---~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~--------~~~~~ 217 (839)
++.+ .+..+- .. ...++.. -.+..+-.++.|- +.......+.|+.++.+|+.... ..+..
T Consensus 207 ~dgqv-r~s~i~~t~~~e~t~rl~~--h~g~vhklav~p~----sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~ 279 (559)
T KOG1334|consen 207 RDGQV-RVSEILETGYVENTKRLAP--HEGPVHKLAVEPD----SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK 279 (559)
T ss_pred ccCce-eeeeeccccceecceeccc--ccCccceeeecCC----CCCcccccccccceeeeeeccCCccceeeeeccCCc
Confidence 2322 111111 11 1222322 1023343444332 33556666778888888866322 11222
Q ss_pred ---CceEEEECCCCc-EEEEeecCCeEEEEe
Q 003205 218 ---LSQKMAVSPNGN-FVACFTHDGRLVVNN 244 (839)
Q Consensus 218 ---~i~~ia~Spng~-~iA~~~~~g~i~i~s 244 (839)
....|++.|..- ..|.++.+-...|++
T Consensus 280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD 310 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYD 310 (559)
T ss_pred cceeeeeEecCCCCccccccCChhhhhhhhc
Confidence 356888888765 677777776666664
No 333
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.85 E-value=11 Score=41.50 Aligned_cols=67 Identities=16% Similarity=0.364 Sum_probs=48.0
Q ss_pred CEEEEcCCCC-eEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe--EEEEEeCCeEEE
Q 003205 36 NKVACAPFGG-PIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT--LICVVQDGTVYR 112 (839)
Q Consensus 36 ~~va~sp~Gg-~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~--Lv~v~~dGtv~l 112 (839)
..+|+||+-. ++.+++ .+++|+|++..-....+--.-. ..+++.+|.-||. +..+..+|.|.+
T Consensus 197 rdlafSp~~~GLl~~as------------l~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 197 RDLAFSPFNEGLLGLAS------------LGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred hhhccCccccceeeeec------------cCceEEEEecccceeeeheecc--CCceeeeeccCCcceeEEeccCceEEE
Confidence 3578898765 555543 6789999996655444322222 5789999998875 569999999999
Q ss_pred EeCC
Q 003205 113 YNIH 116 (839)
Q Consensus 113 ~~~~ 116 (839)
||+.
T Consensus 263 yD~R 266 (463)
T KOG1645|consen 263 YDMR 266 (463)
T ss_pred EEcc
Confidence 9864
No 334
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=89.54 E-value=0.61 Score=31.37 Aligned_cols=30 Identities=23% Similarity=0.459 Sum_probs=26.6
Q ss_pred cCCCceEEEECCCCcEEEEeecCCeEEEEe
Q 003205 215 DDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (839)
Q Consensus 215 ~~~~i~~ia~Spng~~iA~~~~~g~i~i~s 244 (839)
+..++..+.++|++.++++.+.+|++.+|+
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456789999999999999999999999884
No 335
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=89.51 E-value=8.9 Score=36.28 Aligned_cols=86 Identities=12% Similarity=-0.021 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHhCCChhHHHHhhccCCCCCCchHHHHHHHhcCCHHHHHHhhccCCCHHHHHHHHHHc-CCHHHHHHH
Q 003205 721 EKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARI-GMAKEAADA 799 (839)
Q Consensus 721 dkr~~~~kl~ala~~~~w~~L~~f~~~KKspIgyepfv~~~~~~~~~~ea~~yI~~i~d~~~r~~~~~~~-~~~~~A~~~ 799 (839)
+.-+.-.-+..+++... .++..|.+.+-+....+-.+..|.+.+..+++.....++...++-++++++- +++..|++.
T Consensus 40 ~~~~~~~li~ly~~~~~-~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~ 118 (140)
T smart00299 40 NPALQTKLIELYAKYDP-QKEIERLDNKSNHYDIEKVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEY 118 (140)
T ss_pred chhHHHHHHHHHHHHCH-HHHHHHHHhccccCCHHHHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHH
Confidence 44466666666666543 3444455432333444447777777665555544444444444444444444 444444444
Q ss_pred HHhcCCHH
Q 003205 800 ASQAKDGE 807 (839)
Q Consensus 800 a~~~kd~~ 807 (839)
|.+..|.+
T Consensus 119 ~~~~~~~~ 126 (140)
T smart00299 119 FVKQNNPE 126 (140)
T ss_pred HHhCCCHH
Confidence 44444444
No 336
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.36 E-value=21 Score=41.19 Aligned_cols=111 Identities=11% Similarity=0.044 Sum_probs=76.9
Q ss_pred CCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCC-CeEEEEEeCCeEEEEeCC-CCccccCCCCCccccccCeEEEEE
Q 003205 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSED-QTLICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVF 140 (839)
Q Consensus 64 ~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~d-e~Lv~v~~dGtv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~ 140 (839)
..+.|.+|+- .|++-.++......++|..+-|..+ +.+-++..|+.|-.|+.+ ++.....-.. +..+.+..+
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~-----~~~~~sl~i 152 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ-----KPLVSSLCI 152 (541)
T ss_pred CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC-----CCccceEEE
Confidence 5789999995 5555566664443489999999986 568899999999999865 3334433333 567888999
Q ss_pred ECCeEEEEecCCeEEEEecCCCc-eEEEcCCCCCCCCCceEEE
Q 003205 141 WGNGVVCVTEANRYFCMADFATM-KVCELARPEVEELPHCVAV 182 (839)
Q Consensus 141 ~~~G~v~~t~~~~~~~v~~~~~~-~~~~l~~~~~~~~~~~w~v 182 (839)
+++|..++++++.+- +.++++. ..+.|+- .+++.++..+
T Consensus 153 s~D~~~l~~as~~ik-~~~~~~kevv~~ftg--h~s~v~t~~f 192 (541)
T KOG4547|consen 153 SPDGKILLTASRQIK-VLDIETKEVVITFTG--HGSPVRTLSF 192 (541)
T ss_pred cCCCCEEEeccceEE-EEEccCceEEEEecC--CCcceEEEEE
Confidence 999999999888764 4555543 3444442 2244566554
No 337
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.25 E-value=0.13 Score=49.30 Aligned_cols=122 Identities=17% Similarity=0.095 Sum_probs=92.6
Q ss_pred HHHHHHHHcCCcc----hHHhHHhHcCCChHHHHHHHHHHHHhCCChhHHHHhhccCCCCCCchHHHHHHHhcCCHHHHH
Q 003205 696 DTIRTCIVLGNHR----AAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEAL 771 (839)
Q Consensus 696 ~ti~~l~~~~~~k----~a~~l~k~fkvsdkr~~~~kl~ala~~~~w~~L~~f~~~KKspIgyepfv~~~~~~~~~~ea~ 771 (839)
+.|..+.+.+..+ --+.+.++.+..++.+.-.-+.-+++.+.-+.|.+|.++-.. .......+.|.++|-.++|.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-yd~~~~~~~c~~~~l~~~a~ 90 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-YDLDKALRLCEKHGLYEEAV 90 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-S-CTHHHHHHHTTTSHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-cCHHHHHHHHHhcchHHHHH
Confidence 3444444444432 345556555667788999999999999888999999984333 55566999999999999998
Q ss_pred HhhccCCCHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 003205 772 KYIPKLVDPRERAEAYARIGMAKEAADAASQAKDGELLGRLKLTFAQ 818 (839)
Q Consensus 772 ~yI~~i~d~~~r~~~~~~~~~~~~A~~~a~~~kd~~~L~~i~~~~~~ 818 (839)
....++.+.++-++++.+.+++.+|++.|.+.+|.+....+.+.+-+
T Consensus 91 ~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~ 137 (143)
T PF00637_consen 91 YLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLD 137 (143)
T ss_dssp HHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCT
T ss_pred HHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 88888887777777788889999999999999998888888776643
No 338
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=88.89 E-value=0.98 Score=51.16 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=55.0
Q ss_pred EEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc------cccCCCceEEEECC--CCcEEEEeecCCeEEEEecC
Q 003205 181 AVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSP--NGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 181 ~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~Sp--ng~~iA~~~~~g~i~i~ssd 246 (839)
||..-.++.+|..++..+.|-.+.+||.-... .+|...|-.+.|=| +.+.|+++..|..|++.+.+
T Consensus 52 CVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 52 CVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD 125 (758)
T ss_pred eecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence 45555677899999999999999999988654 57788899999988 45789999999999999866
No 339
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=88.76 E-value=26 Score=40.72 Aligned_cols=116 Identities=19% Similarity=0.172 Sum_probs=75.9
Q ss_pred hCChHHHHHHHHHcCChHHHHHHHHHhCCChh-----hHHHHhHhhhhhhcCCCCh--HHHHHHHHHHhc-cCCCCCHHH
Q 003205 437 SLTASVLIGRLINANCHLLALRISEYLGMNQE-----VVIMHWACSKITASLAIPD--VTLLEILLDKLK-LCKGISYAA 508 (839)
Q Consensus 437 ~l~~~~li~rL~~r~~~~lA~~I~~~l~~~~~-----~I~~~WA~~kI~~~~~~~D--~~l~~~I~~kl~-~~~~is~~~ 508 (839)
.+++..|+.+.++.++...|++|-.-++-... ..|..=+-+-. +. .+++ |..++.-...+- -...++.+-
T Consensus 408 ~l~~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll-~~-pl~~ere~~le~algsF~ap~rpl~~~~ 485 (545)
T PF11768_consen 408 DLGLVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLL-RQ-PLTPEREAQLEAALGSFYAPTRPLSDAT 485 (545)
T ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHh-cC-CCChHHHHHHHHHHhhccCCCcCccHHH
Confidence 67788899999999999999999988876631 23333333333 22 2333 333444333332 334566665
Q ss_pred HHHHHHHhCcHHHHHHHHhcCCCCCCchhhhhccCchHHHHHHHHHcCCchHHHHHHH
Q 003205 509 VAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIF 566 (839)
Q Consensus 509 IA~~A~~~gR~~LA~~Ll~~E~~~~~qV~lLl~~~~~~~AL~~Ai~S~D~dLI~~vll 566 (839)
+.+.+-.. ..+|+++.. -||.-+.+|+|..-|++=||.||-.-+-.
T Consensus 486 ~~ey~d~V--~~~aRRfFh----------hLLR~~rfekAFlLAvdi~~~DLFmdlh~ 531 (545)
T PF11768_consen 486 VLEYRDPV--SDLARRFFH----------HLLRYQRFEKAFLLAVDIGDRDLFMDLHY 531 (545)
T ss_pred HHHHHHHH--HHHHHHHHH----------HHHHhhHHHHHHHHHHhccchHHHHHHHH
Confidence 55544444 457777654 48888999999999999999999766543
No 340
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.69 E-value=4.3 Score=49.87 Aligned_cols=179 Identities=13% Similarity=0.039 Sum_probs=96.3
Q ss_pred CCeEEEeecCCCeEEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEec--CCeEEEEecCCC-ce
Q 003205 88 GRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTE--ANRYFCMADFAT-MK 164 (839)
Q Consensus 88 ~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~--~~~~~~v~~~~~-~~ 164 (839)
+.+.+.+-- ..-++++++-|.|-..++.|++..+..+..+ +.+|..+.|..+|..++.+ +|++ .+|+.+. +-
T Consensus 90 ~~v~s~a~~-~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v---~~~Vtsvafn~dg~~l~~G~~~G~V-~v~D~~~~k~ 164 (1206)
T KOG2079|consen 90 AGVISSAIV-VVPIVIGTSHGHVLLSDMTGNLGPLHQNERV---QGPVTSVAFNQDGSLLLAGLGDGHV-TVWDMHRAKI 164 (1206)
T ss_pred cceeeeeee-eeeEEEEcCchhhhhhhhhcccchhhcCCcc---CCcceeeEecCCCceeccccCCCcE-EEEEccCCcc
Confidence 444444332 2336788888889999999988666665543 7889999999999988886 3444 4555553 33
Q ss_pred EEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCC-------cc-----cccCCCceEEEECCCCcEEE
Q 003205 165 VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDG-------VQ-----KVDDTLSQKMAVSPNGNFVA 232 (839)
Q Consensus 165 ~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~-------~~-----~~~~~~i~~ia~Spng~~iA 232 (839)
.+.+.. .+.|+. .|+....+.++.+....+..|.+|-...+. +. .+..++|.+++-=|.. .++
T Consensus 165 l~~i~e---~~ap~t-~vi~v~~t~~nS~llt~D~~Gsf~~lv~nk~~L~~~~~kskcl~sg~~g~Vis~s~i~~e-~l~ 239 (1206)
T KOG2079|consen 165 LKVITE---HGAPVT-GVIFVGRTSQNSKLLTSDTGGSFWKLVFNKALLNMNTDKSKCLLSGKNGEVISASPISDE-NLG 239 (1206)
T ss_pred eeeeee---cCCccc-eEEEEEEeCCCcEEEEccCCCceEEEEechhhhcccchHHHHhhcCCCCceEecccCCcc-hhh
Confidence 333432 133432 344434444666566666677665544432 11 2345666555444442 333
Q ss_pred EeecCCeEEEEecCCCCccccccC--CCCCCCCceeeecCceEEEE
Q 003205 233 CFTHDGRLVVNNTNFSSPVIDESC--ESALPPEQIAWCGMDSVLLY 276 (839)
Q Consensus 233 ~~~~~g~i~i~ssd~~~~l~e~~~--~~~~~p~~~~WcG~d~vv~~ 276 (839)
..+-+.-..+.=.-.++.+.-|.+ ..+.+|.-+.|.|...++..
T Consensus 240 ~~~v~hf~~v~L~p~~sIvt~fPi~f~~q~pPa~v~~~~~~s~~in 285 (1206)
T KOG2079|consen 240 SLLVSHFGFVSLVPLSSIVTLFPIKFMYQKPPAGVVGSGSHSKLIN 285 (1206)
T ss_pred hhheeeeeEEEeecccceeeecceEEEEecCCCceeccccceeeee
Confidence 322222211111112232222221 12457888888887666553
No 341
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.67 E-value=16 Score=43.64 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=96.7
Q ss_pred ccCCCHHHHHHHHHHcCCcchHHhHHhHcCCCh----HHH-HHHHHHHHH-hCCChhHHHHhhc---c-CCCCCCchHHH
Q 003205 689 FVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSE----KRW-YWLKVFALA-TKRDWDALERFSK---E-KRPPIGYRPFV 758 (839)
Q Consensus 689 f~~~Sl~~ti~~l~~~~~~k~a~~l~k~fkvsd----kr~-~~~kl~ala-~~~~w~~L~~f~~---~-KKspIgyepfv 758 (839)
|.-+|+.-.|..|+.++....|-++++-.+.|+ +-| .|.+.+.-- ...+=+-|+++-. . -.+-|.|..++
T Consensus 435 y~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA 514 (829)
T KOG2280|consen 435 YRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIA 514 (829)
T ss_pred HhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHH
Confidence 445666667888888888889999999999998 222 232222211 2223333444432 1 25679999999
Q ss_pred HHHHhcCCHHHHHHhhccCCCHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHHh
Q 003205 759 EACVDADEKGEALKYIPKLVDPRERAEAYARIGMAKEAADAASQAKDGELLGRLKLTF 816 (839)
Q Consensus 759 ~~~~~~~~~~ea~~yI~~i~d~~~r~~~~~~~~~~~~A~~~a~~~kd~~~L~~i~~~~ 816 (839)
......|+++.|.+++..=++..+++.++++++++..|..-|.+.+|.++...+.-.+
T Consensus 515 ~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhl 572 (829)
T KOG2280|consen 515 RRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHL 572 (829)
T ss_pred HHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHH
Confidence 9999999999999999999989999999999999999999999999988766665444
No 342
>PF13934 ELYS: Nuclear pore complex assembly
Probab=88.33 E-value=11 Score=39.26 Aligned_cols=109 Identities=19% Similarity=0.186 Sum_probs=77.2
Q ss_pred chHHhHHhHcCCChHHHHHHHHHHHHhCCChhHH-HHhhccCCCCCCchHHHHHHHhcCCHHHHHHhhccCCCH---HHH
Q 003205 708 RAAMKVKTEFKVSEKRWYWLKVFALATKRDWDAL-ERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDP---RER 783 (839)
Q Consensus 708 k~a~~l~k~fkvsdkr~~~~kl~ala~~~~w~~L-~~f~~~KKspIgyepfv~~~~~~~~~~ea~~yI~~i~d~---~~r 783 (839)
..+++++..|+||.+-.-.++---+-+.++|++- +.+....-+|-=-..++.+++.+|+++.|..|+..++-+ .+-
T Consensus 64 ~~~~~Fa~~f~ip~~~~~~~~g~W~LD~~~~~~A~~~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~ 143 (226)
T PF13934_consen 64 ELAESFARAFGIPPKYIKFIQGFWLLDHGDFEEALELLSHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEA 143 (226)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhChHhHHHHHHHhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHH
Confidence 4699999999999997766666666677777544 444332222222234999999999999999999887521 333
Q ss_pred HH---HHHHcCCHHHHHHHHHhcCCHH---HHHHHHHHh
Q 003205 784 AE---AYARIGMAKEAADAASQAKDGE---LLGRLKLTF 816 (839)
Q Consensus 784 ~~---~~~~~~~~~~A~~~a~~~kd~~---~L~~i~~~~ 816 (839)
+. -++.+++..||-..+....+.. .++.+...+
T Consensus 144 ~~~~~~~La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~ 182 (226)
T PF13934_consen 144 LTLYFVALANGLVTEAFSFQRSYPDELRRRLFEQLLEHC 182 (226)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCchhhhHHHHHHHHHHH
Confidence 33 3688999999999998888854 555555555
No 343
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=87.61 E-value=11 Score=45.81 Aligned_cols=156 Identities=15% Similarity=0.174 Sum_probs=83.5
Q ss_pred CceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCCCCc-cccCCCCCccccccCeEEEEEECCeEEEEecCCe-
Q 003205 76 VLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAEL-IEPNASMGKECFEENVVECVFWGNGVVCVTEANR- 153 (839)
Q Consensus 76 ~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~-~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~- 153 (839)
+...+..... +.+.-|.-+ +-.|.|+...|+|.+=|+..-. ..+.-.| ++.|.+.-+.+|=++-+-.+++
T Consensus 168 ~e~r~~~v~a--~~v~imR~N-nr~lf~G~t~G~V~LrD~~s~~~iht~~aH-----s~siSDfDv~GNlLitCG~S~R~ 239 (1118)
T KOG1275|consen 168 KETRTTNVSA--SGVTIMRYN-NRNLFCGDTRGTVFLRDPNSFETIHTFDAH-----SGSISDFDVQGNLLITCGYSMRR 239 (1118)
T ss_pred eeeeeeeccC--CceEEEEec-CcEEEeecccceEEeecCCcCceeeeeecc-----ccceeeeeccCCeEEEeeccccc
Confidence 3344444433 446666553 3457899999999988865322 2233334 5556665555544433333443
Q ss_pred -------EEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc--------cccCCC
Q 003205 154 -------YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--------KVDDTL 218 (839)
Q Consensus 154 -------~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~--------~~~~~~ 218 (839)
|..|+++... +.|+.++..-.|.--. ..|.+ -...+.++..|..-..|..+.. ....++
T Consensus 240 ~~l~~D~FvkVYDLRmm--ral~PI~~~~~P~flr-f~Psl---~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s 313 (1118)
T KOG1275|consen 240 YNLAMDPFVKVYDLRMM--RALSPIQFPYGPQFLR-FHPSL---TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGS 313 (1118)
T ss_pred ccccccchhhhhhhhhh--hccCCcccccCchhhh-hcccc---cceEEEEecccceeeccccccCCCccceeEEccCCC
Confidence 4445544321 1222222111222111 11211 1344555555555555533211 122333
Q ss_pred -ceEEEECCCCcEEEEeecCCeEEEEec
Q 003205 219 -SQKMAVSPNGNFVACFTHDGRLVVNNT 245 (839)
Q Consensus 219 -i~~ia~Spng~~iA~~~~~g~i~i~ss 245 (839)
+..+.+|+||+.+|++..+|.|.+|..
T Consensus 314 ~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 314 GISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cceeEEecCCCceEEEecccCcEeeecC
Confidence 899999999999999999999999974
No 344
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=87.54 E-value=35 Score=35.90 Aligned_cols=134 Identities=10% Similarity=0.000 Sum_probs=81.8
Q ss_pred eEEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEec--CCeE--EEEecCCCceEE-EcCCCCCC
Q 003205 100 TLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTE--ANRY--FCMADFATMKVC-ELARPEVE 174 (839)
Q Consensus 100 ~Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~--~~~~--~~v~~~~~~~~~-~l~~~~~~ 174 (839)
.+.+.+.|-|+++.++.|....+-... . +-.+..+.++++|-....- +.++ |.+.+-.+...+ .+++
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~-~---~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~---- 201 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHN-Q---NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP---- 201 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeec-c---ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc----
Confidence 467888899999998887775544422 1 2347788999877665553 3343 555543222222 2222
Q ss_pred CCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----------cccCCCceEEEECCCCcE-EEEeecC-CeEEE
Q 003205 175 ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----------KVDDTLSQKMAVSPNGNF-VACFTHD-GRLVV 242 (839)
Q Consensus 175 ~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----------~~~~~~i~~ia~Spng~~-iA~~~~~-g~i~i 242 (839)
...+..++ .||......+.+..||++-+||..... +.|.|.|....|||-|-. +.++++- +.+.+
T Consensus 202 t~D~gF~~---S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv 278 (344)
T KOG4532|consen 202 TSDHGFYN---SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHV 278 (344)
T ss_pred cCCCceee---eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEE
Confidence 23344443 344466777888889999999987431 457888999999996643 3333431 23555
Q ss_pred Ee
Q 003205 243 NN 244 (839)
Q Consensus 243 ~s 244 (839)
.+
T Consensus 279 ~D 280 (344)
T KOG4532|consen 279 VD 280 (344)
T ss_pred EE
Confidence 43
No 345
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=87.01 E-value=11 Score=34.34 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=42.4
Q ss_pred cCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCC
Q 003205 63 SALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIH 116 (839)
Q Consensus 63 ~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~ 116 (839)
+.|..||||... .++.++.- . +.|..+.-...++++-+++||||-+|+..
T Consensus 22 s~D~~IRvf~~~-e~~~Ei~e-~--~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 22 SDDFEIRVFKGD-EIVAEITE-T--DKVTSLCSLGGGRFAYALANGTVGVYDRS 71 (111)
T ss_pred cCCcEEEEEeCC-cEEEEEec-c--cceEEEEEcCCCEEEEEecCCEEEEEeCc
Confidence 368999999965 88888873 4 78888888888999999999999999754
No 346
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=86.81 E-value=5 Score=45.56 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=35.1
Q ss_pred CceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeee
Q 003205 218 LSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC 268 (839)
Q Consensus 218 ~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~Wc 268 (839)
.+..|++||+|++.|+...=|.|.+++..-...+.=+..- +--|+.|.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGY---RdAqc~wi 356 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGY---RDAQCGWI 356 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccC---ccceEEEE
Confidence 3789999999988888655678999988766666555433 33478886
No 347
>PF14649 Spatacsin_C: Spatacsin C-terminus
Probab=86.78 E-value=51 Score=35.74 Aligned_cols=104 Identities=14% Similarity=0.186 Sum_probs=71.5
Q ss_pred hHHHHHHHHHhhhhhc-----c-ccchHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHHHHHHHHcCCcchHHhHHh
Q 003205 642 PRIKRIEKAHSLFSET-----K-EHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKT 715 (839)
Q Consensus 642 ~k~~~L~~a~~~~~~~-----~-~~~f~~~~~~~~~~Ll~~Q~~Le~~~~~~~f~~~Sl~~ti~~l~~~~~~k~a~~l~k 715 (839)
...+.|..|.+.|..+ + +..-.+.-+-.+++|+.+|..+-++.....+++++-.+..+.+.......+|.-+++
T Consensus 166 ~~~~~L~~am~~~~~AAe~ylk~~~~~~A~~c~~~a~LvaLQi~l~n~~~~~~iinL~~~~~~~~v~~~~~F~eALIva~ 245 (296)
T PF14649_consen 166 ELKSELLEAMENFTDAAENYLKDNCLRLAQRCAAQAQLVALQIRLLNQAQNVRIINLSREEARRLVMSHPRFPEALIVAE 245 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhhccccccceEeeCCHHHHHHHHHhCCChHHHHHHHH
Confidence 4556677777666432 1 113456678889999999999987655547899998888888888888889999999
Q ss_pred HcCCChHHHHHH--HHHHHHhCCChhHHHHhhc
Q 003205 716 EFKVSEKRWYWL--KVFALATKRDWDALERFSK 746 (839)
Q Consensus 716 ~fkvsdkr~~~~--kl~ala~~~~w~~L~~f~~ 746 (839)
-|+..+. -.|. --.-.+..|+++-|+.|..
T Consensus 246 AY~~n~~-~~Wa~~Ly~q~v~~g~~~YL~df~~ 277 (296)
T PF14649_consen 246 AYDLNQP-SDWAEVLYQQVVLNGNFKYLEDFLS 277 (296)
T ss_pred HHCCCCC-ccHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9988322 2232 2234455566666666654
No 348
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=86.46 E-value=39 Score=39.27 Aligned_cols=109 Identities=17% Similarity=0.074 Sum_probs=82.2
Q ss_pred chHHhHHhHcCCChHHHHHHHHHHHHhCCChhHHHHhhccC-------------------CCCCCchHHHHHH-------
Q 003205 708 RAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEK-------------------RPPIGYRPFVEAC------- 761 (839)
Q Consensus 708 k~a~~l~k~fkvsdkr~~~~kl~ala~~~~w~~L~~f~~~K-------------------KspIgyepfv~~~------- 761 (839)
.-|-++..+||++--..|-=.-+.|++.+...+|..+.|-- |..--|..|.+.+
T Consensus 982 diAf~Vi~dFkL~AadiYagaA~qLadkeKgSeiqeLfK~ik~siqddd~daa~n~aDTgkarsvwlifcelLn~L~Aai 1061 (1141)
T KOG1811|consen 982 DIAFRVIQDFKLDAADIYAGAARQLADKEKGSEIQELFKCIKESIQDDDGDAAKNDADTGKARSVWLIFCELLNCLEAAI 1061 (1141)
T ss_pred chHHHHHHHhcccHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcccccchhhhhcccccccchhHHHHHHHHHHHHHHHH
Confidence 45888899999999999999999999999888887776421 2222233444332
Q ss_pred --HhcCCHHHHHHhhccCCCHHHHHHHHHHcCCHHHHHHHHHhcCC---HHHHHHHHHHh
Q 003205 762 --VDADEKGEALKYIPKLVDPRERAEAYARIGMAKEAADAASQAKD---GELLGRLKLTF 816 (839)
Q Consensus 762 --~~~~~~~ea~~yI~~i~d~~~r~~~~~~~~~~~~A~~~a~~~kd---~~~L~~i~~~~ 816 (839)
..+-+|++-...|.++.+.++|+-.|+-|+..+.|-..|.+++- ....+++....
T Consensus 1062 niyan~hke~~d~LId~i~n~~~KVlAcliC~kLkSAf~IAskqe~g~a~AdVQ~VahaA 1121 (1141)
T KOG1811|consen 1062 NIYANIHKEELDGLIDAIHNDDNKVLACLICCKLKSAFLIASKQEHGRATADVQQVAHAA 1121 (1141)
T ss_pred HHhccCChhhhHHHHHHHhccccceeeeeeehhhhhHHHHhhhhhccchhHHHHHHHHHH
Confidence 23466778999999999999999999999999999999996665 34555555444
No 349
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.30 E-value=48 Score=35.60 Aligned_cols=60 Identities=10% Similarity=0.181 Sum_probs=40.4
Q ss_pred CCeEEEeecCCCe-EEEEEeCCeEEEE-eCCCCcccc-CCCCCccccccCeEEEEEECCeEEEEecCC
Q 003205 88 GRLIGMSWSEDQT-LICVVQDGTVYRY-NIHAELIEP-NASMGKECFEENVVECVFWGNGVVCVTEAN 152 (839)
Q Consensus 88 ~~I~~~~fs~de~-Lv~v~~dGtv~l~-~~~G~~~~~-~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~ 152 (839)
+.|-++.|+|+.. |+++...+.-.++ +..|+++.. .+.--.+ . -.+..-++|+.+++...
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D--p---E~Ieyig~n~fvi~dER 148 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD--P---ETIEYIGGNQFVIVDER 148 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCC--h---hHeEEecCCEEEEEehh
Confidence 5689999999886 7888888888888 899998542 2211000 1 12345568888877643
No 350
>PRK02888 nitrous-oxide reductase; Validated
Probab=86.29 E-value=15 Score=43.51 Aligned_cols=98 Identities=11% Similarity=0.140 Sum_probs=56.2
Q ss_pred CeEEEEEECCeEEEEecCC---e--EEEEecCCC-------ceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCC
Q 003205 134 NVVECVFWGNGVVCVTEAN---R--YFCMADFAT-------MKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDA 201 (839)
Q Consensus 134 ~V~~~~~~~~G~v~~t~~~---~--~~~v~~~~~-------~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~ 201 (839)
..+.+.++|||..+...++ . ++-+..+.. |+.....++.++..|-+- .|+.+|..-.++-.|+
T Consensus 322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHT-----aFDg~G~aytslf~ds 396 (635)
T PRK02888 322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHT-----AFDGRGNAYTTLFLDS 396 (635)
T ss_pred CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceE-----EECCCCCEEEeEeecc
Confidence 3456788898887777654 2 232222211 222223333343344322 3556888888888899
Q ss_pred eEEEEecCCc----------c-----cccCCCceEE-----EECCCCcEEEEeec
Q 003205 202 GILMLDEDGV----------Q-----KVDDTLSQKM-----AVSPNGNFVACFTH 236 (839)
Q Consensus 202 tv~l~~~~~~----------~-----~~~~~~i~~i-----a~Spng~~iA~~~~ 236 (839)
.|..|+.+.. . ..+..|-+.. +-.|+|+++..++.
T Consensus 397 qv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 397 QIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred eeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 9999997752 1 2333332222 24899999888764
No 351
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=86.24 E-value=8.7 Score=43.85 Aligned_cols=96 Identities=17% Similarity=0.157 Sum_probs=69.2
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCC-ceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV-LISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRY 113 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~-ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~ 113 (839)
...+++||+|+.||+.. .++++.|.+.+-. .+..+..+. ......|.|--++-+++.. +..+.++
T Consensus 219 i~~iavSpng~~iAl~t------------~~g~l~v~ssDf~~~~~e~~~~~-~~~p~~~~WCG~dav~l~~-~~~l~lv 284 (410)
T PF04841_consen 219 IIKIAVSPNGKFIALFT------------DSGNLWVVSSDFSEKLCEFDTDS-KSPPKQMAWCGNDAVVLSW-EDELLLV 284 (410)
T ss_pred eEEEEECCCCCEEEEEE------------CCCCEEEEECcccceeEEeecCc-CCCCcEEEEECCCcEEEEe-CCEEEEE
Confidence 46899999999999997 3577888876544 566666653 2678899998665555555 5568899
Q ss_pred eCCCCccccCCCCCccccccCeEEEEEEC-CeEEEEecCCe
Q 003205 114 NIHAELIEPNASMGKECFEENVVECVFWG-NGVVCVTEANR 153 (839)
Q Consensus 114 ~~~G~~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~~~ 153 (839)
...|+..++.+.. .+. -+.. ||+-++|.+.+
T Consensus 285 g~~~~~~~~~~~~-------~~~--l~~E~DG~riit~~~~ 316 (410)
T PF04841_consen 285 GPDGDSISFWYDG-------PVI--LVSEIDGVRIITSTSH 316 (410)
T ss_pred CCCCCceEEeccC-------ceE--EeccCCceEEEeCCce
Confidence 9999888877754 121 2222 99999988765
No 352
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=85.40 E-value=43 Score=35.44 Aligned_cols=102 Identities=16% Similarity=0.129 Sum_probs=64.0
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEE-EeCCeEE
Q 003205 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICV-VQDGTVY 111 (839)
Q Consensus 33 l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v-~~dGtv~ 111 (839)
......|+||+|+.+|....+ .....+.++...|..-... .. ..+..-.|++++.+.++ ..++..+
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~---------~~~~~L~~~~~~~~~~~~~--~g--~~l~~PS~d~~g~~W~v~~~~~~~~ 90 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEG---------DGGRSLYVGPAGGPVRPVL--TG--GSLTRPSWDPDGWVWTVDDGSGGVR 90 (253)
T ss_pred ccccceEECCCCCeEEEEEEc---------CCCCEEEEEcCCCcceeec--cC--CccccccccCCCCEEEEEcCCCceE
Confidence 345689999999999998711 1356677776655544433 22 56778889999887544 5566667
Q ss_pred EEe--CCCCccccCCCCCccccccCeEEEEEECCeEEEEe
Q 003205 112 RYN--IHAELIEPNASMGKECFEENVVECVFWGNGVVCVT 149 (839)
Q Consensus 112 l~~--~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t 149 (839)
++. ..|+........... ...|...+++++|.=++-
T Consensus 91 ~~~~~~~g~~~~~~v~~~~~--~~~I~~l~vSpDG~RvA~ 128 (253)
T PF10647_consen 91 VVRDSASGTGEPVEVDWPGL--RGRITALRVSPDGTRVAV 128 (253)
T ss_pred EEEecCCCcceeEEeccccc--CCceEEEEECCCCcEEEE
Confidence 663 445543222211100 127899999998865544
No 353
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.41 E-value=3.1 Score=51.11 Aligned_cols=111 Identities=15% Similarity=0.228 Sum_probs=69.7
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecC-CCCCeEEEeecCCCeE-EEEEeCCe
Q 003205 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKN-PGGRLIGMSWSEDQTL-ICVVQDGT 109 (839)
Q Consensus 32 ~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~-~~~~I~~~~fs~de~L-v~v~~dGt 109 (839)
+...-.++.+--|+|||+.. ..+.+-.++-.|++=. +-|+. -.++|.+++|+.||.+ ..+..+|.
T Consensus 87 ~~~~~v~s~a~~~~~ivi~T------------s~ghvl~~d~~~nL~~-~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~ 153 (1206)
T KOG2079|consen 87 DIAAGVISSAIVVVPIVIGT------------SHGHVLLSDMTGNLGP-LHQNERVQGPVTSVAFNQDGSLLLAGLGDGH 153 (1206)
T ss_pred CCCcceeeeeeeeeeEEEEc------------Cchhhhhhhhhcccch-hhcCCccCCcceeeEecCCCceeccccCCCc
Confidence 33444556666677777775 3566666666776332 22322 2379999999999986 68899999
Q ss_pred EEEEeCC-CCccccCCCCCccccccCeEEEEEECCeEEEEecC--CeEEEE
Q 003205 110 VYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEA--NRYFCM 157 (839)
Q Consensus 110 v~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~--~~~~~v 157 (839)
|.+||++ |+..+-.--+.+. ..+|..+...+.+-+++|++ |.||..
T Consensus 154 V~v~D~~~~k~l~~i~e~~ap--~t~vi~v~~t~~nS~llt~D~~Gsf~~l 202 (1206)
T KOG2079|consen 154 VTVWDMHRAKILKVITEHGAP--VTGVIFVGRTSQNSKLLTSDTGGSFWKL 202 (1206)
T ss_pred EEEEEccCCcceeeeeecCCc--cceEEEEEEeCCCcEEEEccCCCceEEE
Confidence 9999875 4553322222222 56677655555555677764 447654
No 354
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.24 E-value=21 Score=39.61 Aligned_cols=139 Identities=12% Similarity=0.090 Sum_probs=73.9
Q ss_pred ccCeEEEEEEC--CeEEEEecCCeEEEEecCCCceEEEcCCCCCCCC-CceEEEeCCCCCCCCcEEEEEEe-CCeEEEEe
Q 003205 132 EENVVECVFWG--NGVVCVTEANRYFCMADFATMKVCELARPEVEEL-PHCVAVIEPKYTMTGSVEVLIGT-DAGILMLD 207 (839)
Q Consensus 132 ~~~V~~~~~~~--~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~-~~~w~vi~~~~S~~~~~~v~~s~-d~tv~l~~ 207 (839)
..-|.+..|+| .|+..+.+-++...+-++++.....-....- .. --||+. |..-.++++. +|.|+++|
T Consensus 193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~-~~wSC~wDl-------de~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN-QIWSCCWDL-------DERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred chhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccC-Cceeeeecc-------CCcceeEEeccCceEEEEE
Confidence 34577888887 8877666666655565555433322221110 11 123544 5555667765 88899999
Q ss_pred cCCcc--------cccCCCceEEE------ECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeec-Cce
Q 003205 208 EDGVQ--------KVDDTLSQKMA------VSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCG-MDS 272 (839)
Q Consensus 208 ~~~~~--------~~~~~~i~~ia------~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG-~d~ 272 (839)
..... .....||..|+ .+|.|-+++.....-+-|=..-+++..-+-..++..+...+|..|| +|.
T Consensus 265 ~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh 344 (463)
T KOG1645|consen 265 MRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNH 344 (463)
T ss_pred ccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecCccce
Confidence 87543 24456666654 3444545555443333332222333322222233344557899997 555
Q ss_pred EEEEec
Q 003205 273 VLLYWN 278 (839)
Q Consensus 273 vv~~~~ 278 (839)
+++.+.
T Consensus 345 ~l~tyR 350 (463)
T KOG1645|consen 345 LLLTYR 350 (463)
T ss_pred EEEEec
Confidence 566664
No 355
>PRK13684 Ycf48-like protein; Provisional
Probab=83.77 E-value=76 Score=35.11 Aligned_cols=224 Identities=11% Similarity=0.125 Sum_probs=104.0
Q ss_pred CCeEEEeecCCCeEEEEEeCCeEEEEeCC-CC-ccccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCceE
Q 003205 88 GRLIGMSWSEDQTLICVVQDGTVYRYNIH-AE-LIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKV 165 (839)
Q Consensus 88 ~~I~~~~fs~de~Lv~v~~dGtv~l~~~~-G~-~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~~ 165 (839)
..+.++.|.++++-++|..+|.|. -+.+ |+ ......+.... ...+.++.+.++...++...+.++.-.|- +..-
T Consensus 46 ~~l~~v~F~d~~~g~avG~~G~il-~T~DgG~tW~~~~~~~~~~--~~~l~~v~~~~~~~~~~G~~g~i~~S~Dg-G~tW 121 (334)
T PRK13684 46 ANLLDIAFTDPNHGWLVGSNRTLL-ETNDGGETWEERSLDLPEE--NFRLISISFKGDEGWIVGQPSLLLHTTDG-GKNW 121 (334)
T ss_pred CceEEEEEeCCCcEEEEECCCEEE-EEcCCCCCceECccCCccc--ccceeeeEEcCCcEEEeCCCceEEEECCC-CCCC
Confidence 579999999777767777788664 2333 43 22222111000 22244555544222233333444443332 1112
Q ss_pred EEcCCC-CCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCe
Q 003205 166 CELARP-EVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGR 239 (839)
Q Consensus 166 ~~l~~~-~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~ 239 (839)
..+..+ .....+.....+ ++.....++..+.|+.-+-.|.. ....+.+..+.++|+|.+++. +..|.
T Consensus 122 ~~~~~~~~~~~~~~~i~~~------~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~-g~~G~ 194 (334)
T PRK13684 122 TRIPLSEKLPGSPYLITAL------GPGTAEMATNVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAV-SSRGN 194 (334)
T ss_pred eEccCCcCCCCCceEEEEE------CCCcceeeeccceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEEEE-eCCce
Confidence 222111 011112111112 22333445556666655555554 233567899999999876654 55677
Q ss_pred EEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecC-EEEEE-cCCCC-----------------ceEeccCCCeE
Q 003205 240 LVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWND-MLVMV-APQAE-----------------PVQYFYDEPLV 300 (839)
Q Consensus 240 i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~-~l~li-g~~~~-----------------~v~f~~~~~~~ 300 (839)
+..-..+-++............+..+..+.++..++.=+. .+++. ...|. .+.|..++..+
T Consensus 195 i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~ 274 (334)
T PRK13684 195 FYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIW 274 (334)
T ss_pred EEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEE
Confidence 6543223233343343333445566666654443322111 22221 11111 12233334444
Q ss_pred EeecCCceEEEccCcceeeeccc
Q 003205 301 LIPECDGVRILSNSSMEFLQRVP 323 (839)
Q Consensus 301 l~~E~DGvRIit~~~~~~l~~Vp 323 (839)
++. .+|..+.+.+..+-.+.++
T Consensus 275 ~~G-~~G~v~~S~d~G~tW~~~~ 296 (334)
T PRK13684 275 AGG-GNGTLLVSKDGGKTWEKDP 296 (334)
T ss_pred EEc-CCCeEEEeCCCCCCCeECC
Confidence 444 4777777887666655554
No 356
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=83.59 E-value=83 Score=35.47 Aligned_cols=177 Identities=16% Similarity=0.098 Sum_probs=81.9
Q ss_pred CCceEEEEcC-CCCceeEEEecCCCCCeEEE-eecC---CCeEEEEEeCCeEEEEe-CCCCcc-ccCCCCCccccc-c--
Q 003205 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGM-SWSE---DQTLICVVQDGTVYRYN-IHAELI-EPNASMGKECFE-E-- 133 (839)
Q Consensus 64 ~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~-~fs~---de~Lv~v~~dGtv~l~~-~~G~~~-~~~~g~~~~~~~-~-- 133 (839)
.++.+.-++. +|+++++.....+ .+..- .-+| ++.+++.+.+|.+..++ ..|+.. ++..+......+ .
T Consensus 168 ~~g~l~ald~~tG~~~W~~~~~~~--~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 168 SNGMLQALNESDGAVKWTVNLDVP--SLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred CCCEEEEEEccCCCEeeeecCCCC--cccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcc
Confidence 3566777774 6777777664321 00000 0112 45566777788777665 356542 111111000000 0
Q ss_pred -Ce-EEEEEECCeEEE-EecCCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCC
Q 003205 134 -NV-VECVFWGNGVVC-VTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDG 210 (839)
Q Consensus 134 -~V-~~~~~~~~G~v~-~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~ 210 (839)
.+ ..-.+. +|.++ .+.++.++.++-..+...+... . ..+.... .+++.+...+.++.++.++..+
T Consensus 246 ~~~~~sP~v~-~~~vy~~~~~g~l~ald~~tG~~~W~~~---~-~~~~~~~-------~~~~~vy~~~~~g~l~ald~~t 313 (394)
T PRK11138 246 VDVDTTPVVV-GGVVYALAYNGNLVALDLRSGQIVWKRE---Y-GSVNDFA-------VDGGRIYLVDQNDRVYALDTRG 313 (394)
T ss_pred cccCCCcEEE-CCEEEEEEcCCeEEEEECCCCCEEEeec---C-CCccCcE-------EECCEEEEEcCCCeEEEEECCC
Confidence 00 111223 34444 3446667766543332233221 1 1111111 1456666677788888887653
Q ss_pred cc---c---ccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccC
Q 003205 211 VQ---K---VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESC 256 (839)
Q Consensus 211 ~~---~---~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~ 256 (839)
-. . .....+...++ .+..|...+.+|.+..++.+-++.+.+++.
T Consensus 314 G~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 314 GVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred CcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 22 1 11111222222 234666677888888887665666655543
No 357
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=83.43 E-value=60 Score=35.24 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=43.9
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCC--ceeEEEecCCCCCeEEEeecCCCeEEEEEeCC
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV--LISETVWKNPGGRLIGMSWSEDQTLICVVQDG 108 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~--ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dG 108 (839)
..+|||+|..+-+.-++ .++..+.|-||+.... .+..+..+. =....+-|.||++.++|..-|
T Consensus 55 Hg~fs~dG~~LytTEnd-------~~~g~G~IgVyd~~~~~~ri~E~~s~G--IGPHel~l~pDG~tLvVANGG 119 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTEND-------YETGRGVIGVYDAARGYRRIGEFPSHG--IGPHELLLMPDGETLVVANGG 119 (305)
T ss_pred CEEEcCCCCEEEEeccc-------cCCCcEEEEEEECcCCcEEEeEecCCC--cChhhEEEcCCCCEEEEEcCC
Confidence 67899999988776542 2357899999998844 455555544 346778899999654444444
No 358
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=83.17 E-value=4.4 Score=52.45 Aligned_cols=208 Identities=13% Similarity=0.094 Sum_probs=118.5
Q ss_pred CCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeEEEEeC-CCCcc-ccCCCCCccccccCeEEEEE
Q 003205 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNI-HAELI-EPNASMGKECFEENVVECVF 140 (839)
Q Consensus 64 ~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv~l~~~-~G~~~-~~~~g~~~~~~~~~V~~~~~ 140 (839)
.+.+..-|+..|.-+... -+- ..+..|.=.|-... ++++.||.|++|-. +|... .+-..- +.+|..++|
T Consensus 2188 ~~~~~~tq~~~~~~~~~k-~~v--~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g-----~s~vtr~~f 2259 (2439)
T KOG1064|consen 2188 LPWLGSTQTSRGASVMIK-HPV--ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG-----NSRVTRSRF 2259 (2439)
T ss_pred CCccccceecccceeEee-ccc--CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC-----cchhhhhhh
Confidence 355566666666544332 233 66777777776664 89999999999954 44432 222211 456777777
Q ss_pred ECCeEE--EEecCCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEE---eCCeEEEEecCCc--c-
Q 003205 141 WGNGVV--CVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIG---TDAGILMLDEDGV--Q- 212 (839)
Q Consensus 141 ~~~G~v--~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s---~d~tv~l~~~~~~--~- 212 (839)
+..|-. +..++|.+- +|... |++..=-... +..-+.... =|..++.++ .++.+-+||..-. .
T Consensus 2260 ~~qGnk~~i~d~dg~l~-l~q~~-pk~~~s~qch-nk~~~Df~F-------i~s~~~tag~s~d~~n~~lwDtl~~~~~s 2329 (2439)
T KOG1064|consen 2260 NHQGNKFGIVDGDGDLS-LWQAS-PKPYTSWQCH-NKALSDFRF-------IGSLLATAGRSSDNRNVCLWDTLLPPMNS 2329 (2439)
T ss_pred cccCCceeeeccCCcee-ecccC-CcceeccccC-Cccccceee-------eehhhhccccCCCCCcccchhcccCcccc
Confidence 764443 444455442 22221 3221100000 001111111 122333333 2567788876522 1
Q ss_pred ---cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCC
Q 003205 213 ---KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAE 289 (839)
Q Consensus 213 ---~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~ 289 (839)
.-|.+..+.+++-|+.+.+-+++.+|.+.+|+..-.+....| .. |.
T Consensus 2330 ~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~--~~------------------~~----------- 2378 (2439)
T KOG1064|consen 2330 LVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTF--QA------------------LD----------- 2378 (2439)
T ss_pred eeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHh--hh------------------hh-----------
Confidence 567888999999999999999999999999986522222222 10 10
Q ss_pred ceEeccCCCeEEeecCCc-eEEEccCcceeeeccchhh
Q 003205 290 PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPAST 326 (839)
Q Consensus 290 ~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~~ 326 (839)
....++.+..-| +|||.-+...+|...|...
T Consensus 2379 ------~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2379 ------TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred ------hhheeeccCcccceEEEEccccchhhcCchhh
Confidence 112233344556 8999999999998888755
No 359
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=83.13 E-value=5.2 Score=41.68 Aligned_cols=159 Identities=8% Similarity=0.046 Sum_probs=84.6
Q ss_pred ceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEecCC----
Q 003205 77 LISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN---- 152 (839)
Q Consensus 77 ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~---- 152 (839)
++..+..++.+++--+..- ++-..++...||.+.+++..--+ + ..+..+....+-.+.++...|-.+.+...
T Consensus 81 ~~~~~a~~sep~p~~~~s~-~~t~V~~~~~dg~~~v~s~~~~~-~--~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n 156 (319)
T KOG4714|consen 81 PFKVLAKNSEIDPNDACTM-TDNRVCIGYADGSLAVFSTDKDL-A--LMSRIPSIHSGSASRKICRHGNSILSGGCGNWN 156 (319)
T ss_pred ceeeeeccCCCCCcccccc-cCCceEecCCCceEEEEechHHH-h--hhhhcccccccccccceeecccEEecCCcceEe
Confidence 4555555553333322222 24457888899988888644211 1 11100100111122333334544544332
Q ss_pred ---eEEEEecCCCceEEEcCCC-CCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc------cccCCCceEE
Q 003205 153 ---RYFCMADFATMKVCELARP-EVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKM 222 (839)
Q Consensus 153 ---~~~~v~~~~~~~~~~l~~~-~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~i 222 (839)
++| .|.+. |....++.. .+ ...++.+.-|. ..+..+-.+.||.+-+||..... ..|..+++.|
T Consensus 157 ~~d~~~-a~~~~-p~~t~~~~~~~~-~~v~~l~~hp~----qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV 229 (319)
T KOG4714|consen 157 AQDNFY-ANTLD-PIKTLIPSKKAL-DAVTALCSHPA----QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEV 229 (319)
T ss_pred ecccee-eeccc-cccccccccccc-ccchhhhCCcc----cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhhe
Confidence 222 23332 222112211 11 22343333332 33455556668889999987553 5788999999
Q ss_pred EECCC-CcEEEEeecCCeEEEEecC
Q 003205 223 AVSPN-GNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 223 a~Spn-g~~iA~~~~~g~i~i~ssd 246 (839)
-|.|. +.++-+.++||.+|-|+.+
T Consensus 230 ~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 230 HFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred eccCCCchheeEecCCCcEEEEcCC
Confidence 99995 5788888999999999765
No 360
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=83.13 E-value=8.5 Score=41.63 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=44.9
Q ss_pred ceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeCCCCc
Q 003205 66 RKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAEL 119 (839)
Q Consensus 66 ~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~G~~ 119 (839)
...+++...-.++.++..|. +.+.+..|++... |.+..+|..|.+||+.|.-
T Consensus 178 t~lr~~~~~~~~i~~~~~h~--~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~ 230 (404)
T KOG1409|consen 178 TMLKLEQNGCQLITTFNGHT--GEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK 230 (404)
T ss_pred EEEEEeecCCceEEEEcCcc--cceEEEEEcCCCcEEEeccccCceEEEeccCCc
Confidence 34677888889999999999 9999999999655 6899999999999987764
No 361
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=82.98 E-value=4 Score=52.80 Aligned_cols=166 Identities=13% Similarity=0.118 Sum_probs=100.1
Q ss_pred ccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEE
Q 003205 62 ESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECV 139 (839)
Q Consensus 62 ~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~ 139 (839)
++.|+.|++|- ..|+.+-.+.--.. .++..+.|+.+|. ..++..||.+-+|...-+......-| .....+.+
T Consensus 2226 gs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qch-----nk~~~Df~ 2299 (2439)
T KOG1064|consen 2226 GSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCH-----NKALSDFR 2299 (2439)
T ss_pred cCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccCCcceeccccC-----Ccccccee
Confidence 45789999987 67777777665553 7899999999986 68999999999996552222212223 34456677
Q ss_pred EECCeEEEEecC----CeEEEEecCC-CceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcccc
Q 003205 140 FWGNGVVCVTEA----NRYFCMADFA-TMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQKV 214 (839)
Q Consensus 140 ~~~~G~v~~t~~----~~~~~v~~~~-~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~~~ 214 (839)
|-++| ++|.. ++-..+|+-- .|....+...-. +..+|-. |-|..++++..+.+|.|++||..-.+..
T Consensus 2300 Fi~s~--~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~-~gaT~l~-----~~P~~qllisggr~G~v~l~D~rqrql~ 2371 (2439)
T KOG1064|consen 2300 FIGSL--LATAGRSSDNRNVCLWDTLLPPMNSLVHTCHD-GGATVLA-----YAPKHQLLISGGRKGEVCLFDIRQRQLR 2371 (2439)
T ss_pred eeehh--hhccccCCCCCcccchhcccCcccceeeeecC-CCceEEE-----EcCcceEEEecCCcCcEEEeehHHHHHH
Confidence 76533 34421 2222233211 111111111000 2233332 3346788888899999999998866522
Q ss_pred cCCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 215 DDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 215 ~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
|.-+. .. .-.++.+++..|+++||+-+
T Consensus 2372 h~~~~----~~-~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2372 HTFQA----LD-TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred HHhhh----hh-hhheeeccCcccceEEEEcc
Confidence 22121 22 33578888899999999865
No 362
>PRK13684 Ycf48-like protein; Provisional
Probab=82.95 E-value=65 Score=35.64 Aligned_cols=66 Identities=14% Similarity=0.173 Sum_probs=39.1
Q ss_pred CCeEEEeecCCCeEEEEEeCCeEEEEeC-CCC-ccccCCCCCccccccCeEEEEEECCeEEEEec-CCeEE
Q 003205 88 GRLIGMSWSEDQTLICVVQDGTVYRYNI-HAE-LIEPNASMGKECFEENVVECVFWGNGVVCVTE-ANRYF 155 (839)
Q Consensus 88 ~~I~~~~fs~de~Lv~v~~dGtv~l~~~-~G~-~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~-~~~~~ 155 (839)
..+.++.+++++.++++...|.+++=+- .|+ +.....+.... ...+.++.+.++|.+++.+ .+.++
T Consensus 215 ~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~--~~~l~~v~~~~~~~~~~~G~~G~v~ 283 (334)
T PRK13684 215 RRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITN--GYGYLDLAYRTPGEIWAGGGNGTLL 283 (334)
T ss_pred ccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCcccc--ccceeeEEEcCCCCEEEEcCCCeEE
Confidence 5789999999999999999998763233 343 23222221100 2346666677666555554 34443
No 363
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=82.85 E-value=68 Score=36.44 Aligned_cols=62 Identities=13% Similarity=0.217 Sum_probs=41.0
Q ss_pred CCeEEEeecCCCeEEEEEeCCeEEEEeCCCC------ccccCCCCCccccccCeEEEEEECCeEEEEecCCe
Q 003205 88 GRLIGMSWSEDQTLICVVQDGTVYRYNIHAE------LIEPNASMGKECFEENVVECVFWGNGVVCVTEANR 153 (839)
Q Consensus 88 ~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~------~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~ 153 (839)
..+.++.|.+++.++++..+|.+..=+-.|+ +.....+. . ...+.++.+.++|..++.+..-
T Consensus 281 ~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~--~--~~~l~~v~~~~d~~~~a~G~~G 348 (398)
T PLN00033 281 RRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKS--R--GFGILDVGYRSKKEAWAAGGSG 348 (398)
T ss_pred cceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecccCC--C--CcceEEEEEcCCCcEEEEECCC
Confidence 5789999999999999999998764345553 22111111 0 2347777777777777766543
No 364
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=82.45 E-value=12 Score=40.65 Aligned_cols=156 Identities=13% Similarity=0.127 Sum_probs=81.8
Q ss_pred CCeEEEeecCCCe-EEEEEeCCeEEEEe----CCCCc--cccCCCCCccc-------cccCeEEEEEEC--CeEEEEecC
Q 003205 88 GRLIGMSWSEDQT-LICVVQDGTVYRYN----IHAEL--IEPNASMGKEC-------FEENVVECVFWG--NGVVCVTEA 151 (839)
Q Consensus 88 ~~I~~~~fs~de~-Lv~v~~dGtv~l~~----~~G~~--~~~~~g~~~~~-------~~~~V~~~~~~~--~G~v~~t~~ 151 (839)
+.|-++.|...|+ |+++..+|-|.+|. ..|++ .++...|+.|. +++.|..++..+ ++..++.+.
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 6788999999887 68999999999992 22444 34444554432 366677777655 444444433
Q ss_pred C----eEEEEecCCCce-EEEcCC------------CCCC--------------CCCceEEEeCCCCCCCCcEEEEEEeC
Q 003205 152 N----RYFCMADFATMK-VCELAR------------PEVE--------------ELPHCVAVIEPKYTMTGSVEVLIGTD 200 (839)
Q Consensus 152 ~----~~~~v~~~~~~~-~~~l~~------------~~~~--------------~~~~~w~vi~~~~S~~~~~~v~~s~d 200 (839)
+ ++|.+..-.... ...++. |.++ ...|...+.+..+..|+++.+.+ .|
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-Dd 184 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DD 184 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cc
Confidence 2 356654332111 000100 0000 11122223333344444443332 23
Q ss_pred CeEEEEecCCcc----cccCC---------CceEEEECCCC-cEEEEeecCCeEEEEe
Q 003205 201 AGILMLDEDGVQ----KVDDT---------LSQKMAVSPNG-NFVACFTHDGRLVVNN 244 (839)
Q Consensus 201 ~tv~l~~~~~~~----~~~~~---------~i~~ia~Spng-~~iA~~~~~g~i~i~s 244 (839)
=.|-||++.-.. ..+.. -|++--|+|.. ...+.-+..|+|++.+
T Consensus 185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 456677765221 12222 26777888875 3555566789999985
No 365
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=81.87 E-value=84 Score=34.26 Aligned_cols=252 Identities=12% Similarity=0.100 Sum_probs=106.7
Q ss_pred CCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCCCCc--cccCCCCCccccccCeEEEEEECCeEEEEecC
Q 003205 74 AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAEL--IEPNASMGKECFEENVVECVFWGNGVVCVTEA 151 (839)
Q Consensus 74 ~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~--~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~ 151 (839)
+|+.-..+.... ...+.++.|..+.+-.+|..+|++. -+.+|-. .....+...+ .......+.|.++...++-..
T Consensus 4 ~~~~W~~v~l~t-~~~l~dV~F~d~~~G~~VG~~g~il-~T~DGG~tW~~~~~~~~~~-~~~~l~~I~f~~~~g~ivG~~ 80 (302)
T PF14870_consen 4 SGNSWQQVSLPT-DKPLLDVAFVDPNHGWAVGAYGTIL-KTTDGGKTWQPVSLDLDNP-FDYHLNSISFDGNEGWIVGEP 80 (302)
T ss_dssp SS--EEEEE-S--SS-EEEEEESSSS-EEEEETTTEEE-EESSTTSS-EE-----S------EEEEEEEETTEEEEEEET
T ss_pred cCCCcEEeecCC-CCceEEEEEecCCEEEEEecCCEEE-EECCCCccccccccCCCcc-ceeeEEEEEecCCceEEEcCC
Confidence 445555566554 2689999999767767788889764 4555432 2222221100 012244566655333333333
Q ss_pred CeEEEEecCCCceEEEcCC-CCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEEC
Q 003205 152 NRYFCMADFATMKVCELAR-PEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVS 225 (839)
Q Consensus 152 ~~~~~v~~~~~~~~~~l~~-~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~S 225 (839)
+-++.-.|- +..-.+++. .++...+ +.+... +.....+++..|.||.-.-.|.. ....+.+..+..+
T Consensus 81 g~ll~T~Dg-G~tW~~v~l~~~lpgs~--~~i~~l----~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~ 153 (302)
T PF14870_consen 81 GLLLHTTDG-GKTWERVPLSSKLPGSP--FGITAL----GDGSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRS 153 (302)
T ss_dssp TEEEEESST-TSS-EE----TT-SS-E--EEEEEE----ETTEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-
T ss_pred ceEEEecCC-CCCcEEeecCCCCCCCe--eEEEEc----CCCcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEEC
Confidence 444433331 222223321 0111112 222111 22344455666777665555554 3445778999999
Q ss_pred CCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecC-EEEEEc--------------C--CC
Q 003205 226 PNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWND-MLVMVA--------------P--QA 288 (839)
Q Consensus 226 png~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~-~l~lig--------------~--~~ 288 (839)
+||+++|.. ..|.++.-...-.+.-..|+..++.....|.|..+..+.+.=+. .+.+-. . .+
T Consensus 154 ~dG~~vavs-~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~ 232 (302)
T PF14870_consen 154 SDGRYVAVS-SRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNG 232 (302)
T ss_dssp TTS-EEEEE-TTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--
T ss_pred CCCcEEEEE-CcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCc
Confidence 999888775 57777543222234455566655667778888866555443332 222221 1 01
Q ss_pred C---ceEeccCCCeEEeecCCceEEEccCcceeeeccchh---hHhhhccCCCCh
Q 003205 289 E---PVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPAS---TEQIFAIGSTSP 337 (839)
Q Consensus 289 ~---~v~f~~~~~~~l~~E~DGvRIit~~~~~~l~~Vp~~---~~~vf~igS~~p 337 (839)
. .+-|..+ ..+...--.|--+.|.+..+--++.|.. ..++.+|-+.+|
T Consensus 233 ~~~ld~a~~~~-~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~ 286 (302)
T PF14870_consen 233 YGILDLAYRPP-NEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNP 286 (302)
T ss_dssp S-EEEEEESSS-S-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEET
T ss_pred eeeEEEEecCC-CCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCC
Confidence 0 1222222 2333445556667777777777777652 234555544433
No 366
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=81.76 E-value=1.4e+02 Score=36.92 Aligned_cols=80 Identities=11% Similarity=0.044 Sum_probs=48.4
Q ss_pred CCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccC-----CCCCCCCceeeecCceEEEEecCEEEEEcCCCCce
Q 003205 217 TLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESC-----ESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPV 291 (839)
Q Consensus 217 ~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~-----~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v 291 (839)
+.|.+|....-|.++|++-.||+|.+.+..-=+.+.+.+. +.-..+.+..|- |+. .+.+.++
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~--------fp~-----~~~~~~v 326 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFH--------FPC-----IQPPLHV 326 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccc--------ccc-----CCCCceE
Confidence 5577888888889999999999999998553333323210 100111122221 100 1134578
Q ss_pred EeccCCCeEEeecCCc-eE
Q 003205 292 QYFYDEPLVLIPECDG-VR 309 (839)
Q Consensus 292 ~f~~~~~~~l~~E~DG-vR 309 (839)
.|++++-.++.-+.|| +.
T Consensus 327 afSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 327 AFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred EECcccceEEEEecCCCce
Confidence 8888887777777777 55
No 367
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=81.65 E-value=86 Score=34.27 Aligned_cols=198 Identities=16% Similarity=0.181 Sum_probs=107.5
Q ss_pred ecccccc-ccCCCCCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc--CCCCceeEEEecCCCCCeEEEee
Q 003205 19 RKPELYQ-MRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN--SAGVLISETVWKNPGGRLIGMSW 95 (839)
Q Consensus 19 r~~e~y~-m~w~~~~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~--~~G~ll~ti~~~~~~~~I~~~~f 95 (839)
++.++|+ ++.+ .|+-+..+-....-|.|-+. .|.++|||= .+|+--.+|...- +.+...+.+
T Consensus 12 ~kp~ll~~~eG~-~d~vn~~~l~~~e~gv~~~s-------------~drtvrv~lkrds~q~wpsI~~~m-P~~~~~~~y 76 (404)
T KOG1409|consen 12 KKPELLSKIEGS-QDDVNAAILIPKEEGVISVS-------------EDRTVRVWLKRDSGQYWPSIYHYM-PSPCSAMEY 76 (404)
T ss_pred cchhhhhhhcCc-hhhhhhheeccCCCCeEEcc-------------ccceeeeEEeccccccCchhhhhC-CCCceEeee
Confidence 4455553 4553 45555666677777777654 478899996 5788777786544 489999999
Q ss_pred cCCCe-EEEEEeCCeEEEEeCCCCc-----cccCCCCCccccccCeEEEEEEC-CeEEEEecCCeEEEEecCCCceEEEc
Q 003205 96 SEDQT-LICVVQDGTVYRYNIHAEL-----IEPNASMGKECFEENVVECVFWG-NGVVCVTEANRYFCMADFATMKVCEL 168 (839)
Q Consensus 96 s~de~-Lv~v~~dGtv~l~~~~G~~-----~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~~~~~~v~~~~~~~~~~l 168 (839)
.++-. |++.+.+|++.-+.....+ .+..+.| +..|...-|.- .-.++.++..+.+.+.-.++. ..|
T Consensus 77 ~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h-----~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~--~~l 149 (404)
T KOG1409|consen 77 VSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAH-----QARVSAIVFSLTHEWVLSTGKDKQFAWHCTESG--NRL 149 (404)
T ss_pred eccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhh-----hcceeeEEecCCceeEEEeccccceEEEeeccC--Ccc
Confidence 98875 7999999999999765444 2333444 45555433332 333444433332222221111 011
Q ss_pred CCCCCCCCCceEEEeCCCCCCCCcEEEEEEe-CCeEEE--EecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeE
Q 003205 169 ARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-DAGILM--LDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRL 240 (839)
Q Consensus 169 ~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~-d~tv~l--~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i 240 (839)
.. ---.+|++ +++| |-. -+.++. .|.|-. +..+++. .++.+++...+--|..+.+-+...|..+
T Consensus 150 g~----Y~~~~~~t-~~~~--d~~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~v 221 (404)
T KOG1409|consen 150 GG----YNFETPAS-ALQF--DAL-YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSV 221 (404)
T ss_pred cc----eEeeccCC-CCce--eeE-EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCce
Confidence 10 00122222 0111 001 111211 222222 2233332 4666777777777777677666677777
Q ss_pred EEEecC
Q 003205 241 VVNNTN 246 (839)
Q Consensus 241 ~i~ssd 246 (839)
.+|+.-
T Consensus 222 i~wdig 227 (404)
T KOG1409|consen 222 IMWDIG 227 (404)
T ss_pred EEEecc
Confidence 777654
No 368
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.09 E-value=15 Score=41.25 Aligned_cols=68 Identities=15% Similarity=0.275 Sum_probs=52.5
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC---CceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEE
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG---VLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYR 112 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G---~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l 112 (839)
..+-|||+.+.||+-| .+++|.+++..| +++-++........|.++.|+++.+++.++..| +-+
T Consensus 70 ~SIkFSlDnkilAVQR------------~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~ 136 (657)
T KOG2377|consen 70 KSIKFSLDNKILAVQR------------TSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQG-IEF 136 (657)
T ss_pred eEEEeccCcceEEEEe------------cCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCC-eEE
Confidence 4788899999999988 589999999855 344444443322579999999999999999999 778
Q ss_pred EeCC
Q 003205 113 YNIH 116 (839)
Q Consensus 113 ~~~~ 116 (839)
|...
T Consensus 137 y~v~ 140 (657)
T KOG2377|consen 137 YQVL 140 (657)
T ss_pred EEEc
Confidence 8543
No 369
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=80.71 E-value=1.1e+02 Score=34.74 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=40.7
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeE-EEecCCCCCeEEEeecCCCe-EEEEE
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISE-TVWKNPGGRLIGMSWSEDQT-LICVV 105 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~t-i~~~~~~~~I~~~~fs~de~-Lv~v~ 105 (839)
..++||+|..+|..-+. +++...+|+|++. +|+.+.. |.+.. + ..++|++|++ ++-..
T Consensus 128 ~~~~Spdg~~la~~~s~-------~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~--~~~~W~~d~~~~~y~~ 188 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSD-------GGSEWYTLRVFDLETGKFLPDGIENPK--F--SSVSWSDDGKGFFYTR 188 (414)
T ss_dssp EEEETTTSSEEEEEEEE-------TTSSEEEEEEEETTTTEEEEEEEEEEE--S--EEEEECTTSSEEEEEE
T ss_pred eeeECCCCCEEEEEecC-------CCCceEEEEEEECCCCcCcCCcccccc--c--ceEEEeCCCCEEEEEE
Confidence 46899999999998653 2345678999997 7776664 45433 2 2399999977 44444
No 370
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=80.70 E-value=25 Score=40.96 Aligned_cols=183 Identities=10% Similarity=0.033 Sum_probs=83.9
Q ss_pred CCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCCCCc-cccCC-------CCCccccccC-
Q 003205 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAEL-IEPNA-------SMGKECFEEN- 134 (839)
Q Consensus 64 ~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~-~~~~~-------g~~~~~~~~~- 134 (839)
..+..-+++.+|...+.+.... .....+.+.+||.|++++. +.++.+|+.|+. .++.+ .|+...+..+
T Consensus 126 ~~~~~~~iD~~G~Vrw~~~~~~--~~~~~~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn 202 (477)
T PF05935_consen 126 SSSYTYLIDNNGDVRWYLPLDS--GSDNSFKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGN 202 (477)
T ss_dssp BEEEEEEEETTS-EEEEE-GGG--T--SSEEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred CCceEEEECCCccEEEEEccCc--cccceeeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCcccccccccEECCCCC
Confidence 4688999999999988887765 3333378899999998887 668889999985 22222 2332222221
Q ss_pred eE-------------EEEEECCeEEEEecCCeEEEEecCCCc-eEEEc--------CCCCCCCCCceE-EEeCCCCCCCC
Q 003205 135 VV-------------ECVFWGNGVVCVTEANRYFCMADFATM-KVCEL--------ARPEVEELPHCV-AVIEPKYTMTG 191 (839)
Q Consensus 135 V~-------------~~~~~~~G~v~~t~~~~~~~v~~~~~~-~~~~l--------~~~~~~~~~~~w-~vi~~~~S~~~ 191 (839)
++ ......++++.+..+|.+...|++.+. .+.+. ...........| .+.+..|.+..
T Consensus 203 ~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~d 282 (477)
T PF05935_consen 203 LLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSD 282 (477)
T ss_dssp EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTT
T ss_pred EEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCC
Confidence 11 222334666666556665545544321 11111 111111345556 33444555544
Q ss_pred cEEEEEEe-CCeEEEEe-cCCcc---cccCCCc----eEEEE------------------CCCCcEEEEeecCC---eEE
Q 003205 192 SVEVLIGT-DAGILMLD-EDGVQ---KVDDTLS----QKMAV------------------SPNGNFVACFTHDG---RLV 241 (839)
Q Consensus 192 ~~~v~~s~-d~tv~l~~-~~~~~---~~~~~~i----~~ia~------------------Spng~~iA~~~~~g---~i~ 241 (839)
+.+++-+. -++|+.++ .++.. .+..+.+ ....+ -+-||+-|....+| .|.
T Consensus 283 d~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~~~~~g~~~~l~ 362 (477)
T PF05935_consen 283 DSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHTAHLIPDGPQGNLL 362 (477)
T ss_dssp TEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-EEEEE-TTS---SEE
T ss_pred CeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcccccccceEEcCCCCeEEEE
Confidence 55544444 55788888 33332 1111111 11111 23378888888888 888
Q ss_pred EEecCCCC
Q 003205 242 VNNTNFSS 249 (839)
Q Consensus 242 i~ssd~~~ 249 (839)
+++....+
T Consensus 363 vFDNg~~r 370 (477)
T PF05935_consen 363 VFDNGNGR 370 (477)
T ss_dssp EEE--TTG
T ss_pred EEECCCCC
Confidence 88765443
No 371
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=80.52 E-value=31 Score=40.92 Aligned_cols=94 Identities=17% Similarity=0.201 Sum_probs=54.8
Q ss_pred cccccccccEEeeccccccccCC-------CCCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCcee
Q 003205 7 AAEWQLVYNRYYRKPELYQMRWK-------HIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLIS 79 (839)
Q Consensus 7 ~~~W~~Lg~~~yr~~e~y~m~w~-------~~~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ 79 (839)
+.+|--|++++-.....+.-+|. .+.-.++.||++..||.|++.-.. . ...+...+.++--+-
T Consensus 53 S~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~-------~-~~p~~~~~~t~~d~~-- 122 (726)
T KOG3621|consen 53 SAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLN-------K-ELPRDLDYVTPCDKS-- 122 (726)
T ss_pred ccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhh-------c-cCCCcceeecccccc--
Confidence 34455554444444444444553 113344567777777777776321 1 123434333332221
Q ss_pred EEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeCC
Q 003205 80 ETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIH 116 (839)
Q Consensus 80 ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~ 116 (839)
|. .+|.+++||+|+. +.++...|+|.+-.++
T Consensus 123 ----~~--~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 123 ----HK--CRVTALEWSKNGMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred ----CC--ceEEEEEecccccEEeecCCCceEEEEEec
Confidence 45 7899999999996 7899999999877554
No 372
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=80.40 E-value=67 Score=40.03 Aligned_cols=86 Identities=13% Similarity=0.088 Sum_probs=46.0
Q ss_pred CcEEEEeecCCeEEEEecCCCCccccccCCC--CCCCCceeeec-CceEEEE----ecCEEEEEcCCCCceEeccCCCeE
Q 003205 228 GNFVACFTHDGRLVVNNTNFSSPVIDESCES--ALPPEQIAWCG-MDSVLLY----WNDMLVMVAPQAEPVQYFYDEPLV 300 (839)
Q Consensus 228 g~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~--~~~p~~~~WcG-~d~vv~~----~~~~l~lig~~~~~v~f~~~~~~~ 300 (839)
++.+.++|.+|.++....+ +|.... ......|.--+ +|.++.. =+++++++...|..+.|.-+....
T Consensus 700 ~~~ll~vT~~G~~Kr~~l~------e~~~~~R~~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~eI~~ 773 (800)
T TIGR01063 700 ESYLLIVTENGYGKRTSIE------EYRETSRGGKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQDVSE 773 (800)
T ss_pred ccEEEEEecCCcEEEEEHH------HccccCCCCcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHhhCCc
Confidence 4577888888887766532 222111 00111121111 2333221 134688888888888887665444
Q ss_pred EeecCCceEEEccCcceee
Q 003205 301 LIPECDGVRILSNSSMEFL 319 (839)
Q Consensus 301 l~~E~DGvRIit~~~~~~l 319 (839)
...---|++++.....+.+
T Consensus 774 ~gR~a~GVk~i~L~~~D~v 792 (800)
T TIGR01063 774 QGRNTQGVRLIRLDEDDKL 792 (800)
T ss_pred cccCCCCeeeeeeCCCCEE
Confidence 4444457888877555444
No 373
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=80.30 E-value=16 Score=44.79 Aligned_cols=86 Identities=9% Similarity=0.104 Sum_probs=59.5
Q ss_pred CCceEEEEcC--CCCceeEEEecC--CCCCeEEEeecCCCeEEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEE
Q 003205 64 ALRKLRIFNS--AGVLISETVWKN--PGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECV 139 (839)
Q Consensus 64 ~~~~I~iy~~--~G~ll~ti~~~~--~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~ 139 (839)
.++.+.-|++ +|+.+-.-..++ .....-+++=|.+|++++++.+|.||+|+-.|+--++.++- +-..|+.+-
T Consensus 550 s~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~----lG~pI~~iD 625 (794)
T PF08553_consen 550 SDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPG----LGDPIIGID 625 (794)
T ss_pred CCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCC----CCCCeeEEE
Confidence 4677778875 443322111111 12468899999999999999999999999888765555532 145788999
Q ss_pred EECCeEEEEecCCe
Q 003205 140 FWGNGVVCVTEANR 153 (839)
Q Consensus 140 ~~~~G~v~~t~~~~ 153 (839)
++.||.-++..-..
T Consensus 626 vt~DGkwilaTc~t 639 (794)
T PF08553_consen 626 VTADGKWILATCKT 639 (794)
T ss_pred ecCCCcEEEEeecc
Confidence 99999876665443
No 374
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.28 E-value=3.9 Score=46.56 Aligned_cols=68 Identities=10% Similarity=0.021 Sum_probs=56.6
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeE-EEecCCCCCeEEEeecCCCeEEEEEeCCeEEEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISE-TVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRY 113 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~t-i~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~ 113 (839)
++..+.++-.|.||+++ .++.||+|+..|..-.| +++-+ ..|..+.-|.||+.++++-+..+.+.
T Consensus 432 nFsc~aTT~sG~IvvgS------------~~GdIRLYdri~~~AKTAlPgLG--~~I~hVdvtadGKwil~Tc~tyLlLi 497 (644)
T KOG2395|consen 432 NFSCFATTESGYIVVGS------------LKGDIRLYDRIGRRAKTALPGLG--DAIKHVDVTADGKWILATCKTYLLLI 497 (644)
T ss_pred ccceeeecCCceEEEee------------cCCcEEeehhhhhhhhhcccccC--CceeeEEeeccCcEEEEecccEEEEE
Confidence 34667777889999987 68999999999987666 77766 89999999999999999999888877
Q ss_pred eCC
Q 003205 114 NIH 116 (839)
Q Consensus 114 ~~~ 116 (839)
+..
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 643
No 375
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=80.28 E-value=67 Score=38.70 Aligned_cols=174 Identities=11% Similarity=0.153 Sum_probs=96.6
Q ss_pred CCceEEEEcC-CCCceeEEEecCCCCCeEEEeecC---CC-e-EEEEEeCCeEEEEe-CCCCc-cccCCCCCccccccCe
Q 003205 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSE---DQ-T-LICVVQDGTVYRYN-IHAEL-IEPNASMGKECFEENV 135 (839)
Q Consensus 64 ~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~---de-~-Lv~v~~dGtv~l~~-~~G~~-~~~~~g~~~~~~~~~V 135 (839)
..|.|-+||. .|..+..+.-+. +.+-+|.|-+ +. + |+.+....++.+|| -.|+. =++.++|+ +
T Consensus 87 ~~GrIil~d~~~~s~~~~l~~~~--~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~-------i 157 (1062)
T KOG1912|consen 87 ISGRIILVDFVLASVINWLSHSN--DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE-------I 157 (1062)
T ss_pred ccCcEEEEEehhhhhhhhhcCCC--cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc-------c
Confidence 5677888884 555666566555 7899999986 33 2 67899999999995 45654 67777763 2
Q ss_pred EE-EEEE--C-CeEEEEecCCeEEEEecCC--Cc----eEEEcCCC--------------C-CCCCCceEEE----eCCC
Q 003205 136 VE-CVFW--G-NGVVCVTEANRYFCMADFA--TM----KVCELARP--------------E-VEELPHCVAV----IEPK 186 (839)
Q Consensus 136 ~~-~~~~--~-~G~v~~t~~~~~~~v~~~~--~~----~~~~l~~~--------------~-~~~~~~~w~v----i~~~ 186 (839)
.. .++- + .-+.+++..|.+.....+. +| +...+.+. + ..+.|..-.. ..-.
T Consensus 158 Ls~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~fa 237 (1062)
T KOG1912|consen 158 LSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFA 237 (1062)
T ss_pred eeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhh
Confidence 32 2331 1 2223333333322222221 01 01111110 0 0011111000 1123
Q ss_pred CCCCCcEEEEEEeCCeEEEEecCCcc-----cccCC--CceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 187 YTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDT--LSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 187 ~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~--~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
|+|.-.-++++.....++++|..-.. ....+ +|..+-.-|+...+-++..||.+.+|-..
T Consensus 238 f~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 238 FSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred cChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEee
Confidence 68888888999999999999988332 34444 45555544554566666789987777543
No 376
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=80.07 E-value=95 Score=33.77 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=70.0
Q ss_pred CCceEEEECCC--CcEEEEeecC-Ce-E-EEEe--cCCCCccccccCCCCC-CCCceeeecCceEEEEecCEEEEEcCCC
Q 003205 217 TLSQKMAVSPN--GNFVACFTHD-GR-L-VVNN--TNFSSPVIDESCESAL-PPEQIAWCGMDSVLLYWNDMLVMVAPQA 288 (839)
Q Consensus 217 ~~i~~ia~Spn--g~~iA~~~~~-g~-i-~i~s--sd~~~~l~e~~~~~~~-~p~~~~WcG~d~vv~~~~~~l~lig~~~ 288 (839)
.++..+..|++ +..|+.++.. |. + .+-+ .+..+....|...... .|..+.=.+++..++.+++..+++...|
T Consensus 152 ~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~~~~~v~Vn~~G 231 (302)
T smart00036 152 VPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCYDEFGVFVNLYG 231 (302)
T ss_pred ccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEECcEEEEEeCCC
Confidence 45556666655 6678888775 42 2 2211 1222322222222112 5777777788999999999999998888
Q ss_pred -C-----ceEec-------cCCCeEEeecCCceEEEccCcceeeeccchh
Q 003205 289 -E-----PVQYF-------YDEPLVLIPECDGVRILSNSSMEFLQRVPAS 325 (839)
Q Consensus 289 -~-----~v~f~-------~~~~~~l~~E~DGvRIit~~~~~~l~~Vp~~ 325 (839)
. .+.|. |.++.++.-.-+||-|.+-...+++|.+|..
T Consensus 232 ~~~~r~~~l~w~~~p~~~~~~~pyll~~~~~~ievr~l~~~~l~q~i~~~ 281 (302)
T smart00036 232 KRRSRNPILHWEFMPESFAYHSPYLLAFHDNGIEIRSIKTGELLQELADR 281 (302)
T ss_pred CccccceEEEcCCcccEEEEECCEEEEEcCCcEEEEECCCCceEEEEecC
Confidence 2 23332 3345666667789999999999999999863
No 377
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=80.03 E-value=8.8 Score=45.65 Aligned_cols=45 Identities=20% Similarity=0.236 Sum_probs=37.6
Q ss_pred EEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEE
Q 003205 230 FVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLL 275 (839)
Q Consensus 230 ~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~ 275 (839)
++|.+|.+|||.+++-.-+....+|..+ .+..+.+.|-|+-..|-
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvh-t~~VkgleW~g~sslvS 483 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVH-TSLVKGLEWLGNSSLVS 483 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhccc-ccceeeeeeccceeEEE
Confidence 7899999999999987767788888877 45789999999876653
No 378
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=79.53 E-value=24 Score=33.26 Aligned_cols=123 Identities=11% Similarity=0.000 Sum_probs=72.3
Q ss_pred hCChHHHHHHHHHcCChHHHHHHHHHhCCC-h--hhHHHHhHhhhhhhcCCCChHHHHHHHHHHhccCCCCCHHHHHHHH
Q 003205 437 SLTASVLIGRLINANCHLLALRISEYLGMN-Q--EVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHA 513 (839)
Q Consensus 437 ~l~~~~li~rL~~r~~~~lA~~I~~~l~~~-~--~~I~~~WA~~kI~~~~~~~D~~l~~~I~~kl~~~~~is~~~IA~~A 513 (839)
.+.++.+|..+..+++..+.+.-=+.+=-. + ..+...=...-+ ..+.+++.+.+.+ .....+...++..+
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~----~~~~~~ll~~l~~---~~~~yd~~~~~~~c 79 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYA----KYDPQKEIERLDN---KSNHYDIEKVGKLC 79 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHH----HHCHHHHHHHHHh---ccccCCHHHHHHHH
Confidence 456788899998888877777755543111 1 111111111111 1134455555543 34578899999999
Q ss_pred HHhCcHHHHHHHHhcCCCCCCchhhhhcc-CchHHHHHHHHHcCCchHHHHHHH
Q 003205 514 DKSGRRKLAAMLVEHEPRSSKQVPLLLSI-GEEDTALVKATESGDTDLVYLVIF 566 (839)
Q Consensus 514 ~~~gR~~LA~~Ll~~E~~~~~qV~lLl~~-~~~~~AL~~Ai~S~D~dLI~~vll 566 (839)
.+.|..+.|.-|+..-....+-|-++++- ++.+.|++-|.+-+|+++-..++-
T Consensus 80 ~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~~~~ 133 (140)
T smart00299 80 EKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVLK 133 (140)
T ss_pred HHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999888887776555555555555543 555555555555555555555543
No 379
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=79.48 E-value=5.2 Score=46.52 Aligned_cols=81 Identities=9% Similarity=0.094 Sum_probs=56.2
Q ss_pred CCCCcEEEEEEeCCeEEEEecCCcc----cccCCCce-EEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCC
Q 003205 188 TMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQ-KMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPP 262 (839)
Q Consensus 188 S~~~~~~v~~s~d~tv~l~~~~~~~----~~~~~~i~-~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p 262 (839)
+|.-..++++..+|.|.+-..+-+. +.+..++. .++.-|||++||.+-.||+|.+.+..-+..+..+....+...
T Consensus 29 nP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~i 108 (665)
T KOG4640|consen 29 NPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDI 108 (665)
T ss_pred cCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccch
Confidence 3466677777777776665555322 33556666 999999999999999999999998765555555433334455
Q ss_pred Cceeee
Q 003205 263 EQIAWC 268 (839)
Q Consensus 263 ~~~~Wc 268 (839)
..+.|-
T Consensus 109 s~~~w~ 114 (665)
T KOG4640|consen 109 SKGIWD 114 (665)
T ss_pred heeecc
Confidence 677774
No 380
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.26 E-value=13 Score=41.82 Aligned_cols=89 Identities=8% Similarity=0.060 Sum_probs=55.4
Q ss_pred CCcEEEEEEeCCeEEEEecCCcc--------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcccccc----CC
Q 003205 190 TGSVEVLIGTDAGILMLDEDGVQ--------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDES----CE 257 (839)
Q Consensus 190 ~~~~~v~~s~d~tv~l~~~~~~~--------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~----~~ 257 (839)
|.+..+++...|.+.-|-..|-. ..+.|+|.+|.||||.+.||.--.+.++..++---++...++. +.
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k 111 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK 111 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccC
Confidence 44444445555555555444321 3567899999999999999998888899888643334333332 33
Q ss_pred CCCCCCceeeecCceEEEEecC
Q 003205 258 SALPPEQIAWCGMDSVLLYWND 279 (839)
Q Consensus 258 ~~~~p~~~~WcG~d~vv~~~~~ 279 (839)
......+.|..+--+++.-+.
T Consensus 112 -~~~IlGF~W~~s~e~A~i~~~ 132 (657)
T KOG2377|consen 112 -NANILGFCWTSSTEIAFITDQ 132 (657)
T ss_pred -cceeEEEEEecCeeEEEEecC
Confidence 223668888877444444443
No 381
>PRK05560 DNA gyrase subunit A; Validated
Probab=79.09 E-value=65 Score=40.18 Aligned_cols=92 Identities=10% Similarity=0.056 Sum_probs=48.8
Q ss_pred EECCCCcEEEEeecCCeEEEEecCCCCccccccCCCC--CCCCceeeec-CceEEEE--e--cCEEEEEcCCCCceEecc
Q 003205 223 AVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESA--LPPEQIAWCG-MDSVLLY--W--NDMLVMVAPQAEPVQYFY 295 (839)
Q Consensus 223 a~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~--~~p~~~~WcG-~d~vv~~--~--~~~l~lig~~~~~v~f~~ 295 (839)
.+.++++.+.+.|..|.++-.+.+ +|..... .....+.--. +|.++.. . ++.++++...|..+.|.-
T Consensus 698 ~v~~~~~~il~vTk~G~iKr~~l~------e~~~~~R~~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~ 771 (805)
T PRK05560 698 VVREDSQEILTVTENGYGKRTPVS------EYRLQGRGGKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRV 771 (805)
T ss_pred EEcCCCcEEEEEEeCCeEEEEEHH------HhhccCCCCCcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEH
Confidence 344444567888888887766532 2221100 0011111111 2333221 1 346888888888889877
Q ss_pred CCCeEEeecCCceEEEccCcceeee
Q 003205 296 DEPLVLIPECDGVRILSNSSMEFLQ 320 (839)
Q Consensus 296 ~~~~~l~~E~DGvRIit~~~~~~l~ 320 (839)
+.......---|++++.....+.+.
T Consensus 772 ~eI~~~gR~a~GVk~I~L~~~D~V~ 796 (805)
T PRK05560 772 SEISITGRNTQGVRLIRLDEGDKVV 796 (805)
T ss_pred HHCCccccCCCCeeeEecCCCCEEE
Confidence 6554444445578888776555443
No 382
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=78.32 E-value=44 Score=36.89 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=43.0
Q ss_pred CCeEEEeecCCCeEEEEEeCCeEEEEeCCCCc-ccc-CCCCCcc-ccccCeEEEEEEC----CeEEEEecC
Q 003205 88 GRLIGMSWSEDQTLICVVQDGTVYRYNIHAEL-IEP-NASMGKE-CFEENVVECVFWG----NGVVCVTEA 151 (839)
Q Consensus 88 ~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~-~~~-~~g~~~~-~~~~~V~~~~~~~----~G~v~~t~~ 151 (839)
.+.++|.|.||+.+++....|+|++++..|.. ... ... .+. .-+.+...+.+.+ +|.+.+..+
T Consensus 2 ~~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~-~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 2 NNPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLP-EVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp SSEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-T-TTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred CCceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccc-cccccccCCcccceeccccCCCCEEEEEEE
Confidence 35689999999999999999999999977765 111 111 110 0166788999988 587777654
No 383
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=78.32 E-value=1.6e+02 Score=35.40 Aligned_cols=59 Identities=20% Similarity=0.217 Sum_probs=44.3
Q ss_pred CCCHHHH-HHHHHHhCcHHHHHHHHhcCCCCCCchhhhhccCchHHHHHHHHHcCCchHH
Q 003205 503 GISYAAV-AAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLV 561 (839)
Q Consensus 503 ~is~~~I-A~~A~~~gR~~LA~~Ll~~E~~~~~qV~lLl~~~~~~~AL~~Ai~S~D~dLI 561 (839)
|..|-.+ |+-|.-..++++|.++...-......+-|+-++..|+.|+.-|-.-|-|.+=
T Consensus 530 gt~fykvra~lail~kkfk~ae~ifleqn~te~aigmy~~lhkwde~i~lae~~~~p~~e 589 (1636)
T KOG3616|consen 530 GTDFYKVRAMLAILEKKFKEAEMIFLEQNATEEAIGMYQELHKWDEAIALAEAKGHPALE 589 (1636)
T ss_pred CchHHHHHHHHHHHHhhhhHHHHHHHhcccHHHHHHHHHHHHhHHHHHHHHHhcCChHHH
Confidence 4555444 7778888888888877655555667788888999999998888888877653
No 384
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=77.66 E-value=12 Score=38.63 Aligned_cols=58 Identities=10% Similarity=0.149 Sum_probs=42.8
Q ss_pred CCcEEEEEEeCCeEEEEecCCcc----c---------------ccCCCceEEEECCCCcEEEEeecCCeEEEEecCCC
Q 003205 190 TGSVEVLIGTDAGILMLDEDGVQ----K---------------VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFS 248 (839)
Q Consensus 190 ~~~~~v~~s~d~tv~l~~~~~~~----~---------------~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~ 248 (839)
+++.++.+..+|.+|+||..... . .....|..+.++.+|.-|+.++ +|..+.|+.|+.
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence 78888889999999999988653 1 1334577788888887777765 467777776644
No 385
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=77.13 E-value=1.2e+02 Score=38.57 Aligned_cols=56 Identities=9% Similarity=0.239 Sum_probs=34.1
Q ss_pred cCCCeEEEEEeCCeEEEEeCCCCcc-------ccCCCCCccccccCeEEEEEECCe-----EEEEecCCeEEEE
Q 003205 96 SEDQTLICVVQDGTVYRYNIHAELI-------EPNASMGKECFEENVVECVFWGNG-----VVCVTEANRYFCM 157 (839)
Q Consensus 96 s~de~Lv~v~~dGtv~l~~~~G~~~-------~~~~g~~~~~~~~~V~~~~~~~~G-----~v~~t~~~~~~~v 157 (839)
.++..|+.++.+|.|+..++. ++. -..+.. .+.++.+.+..+| ++++|.++....+
T Consensus 619 ~~~~~lv~~Tk~G~VKrt~L~-ef~~~r~~~~aikL~e-----~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF 686 (957)
T PRK13979 619 TPQKDFIFITDSGGIKKTSLD-KFVTNYTKLMALKLKK-----GEKLIKVKLVDRTREEKFIKIKTKKGLSFTV 686 (957)
T ss_pred CCCCEEEEEECCCeEEEEehh-hccccccceEEEEcCC-----CCEEEEEEEcCCCCCCCEEEEEeCCCcEEEE
Confidence 344458999999999988653 121 112222 4457777776543 6788887765443
No 386
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=76.90 E-value=84 Score=31.40 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=14.1
Q ss_pred CCeEEEEEeCCeEEEEeCCCCc
Q 003205 98 DQTLICVVQDGTVYRYNIHAEL 119 (839)
Q Consensus 98 de~Lv~v~~dGtv~l~~~~G~~ 119 (839)
||.-++...||+.+....+|+.
T Consensus 8 dG~~~i~f~NGt~K~v~~dg~~ 29 (179)
T PF07202_consen 8 DGRRVITFPNGTKKEVSPDGKT 29 (179)
T ss_pred CCCEEEEECCCCEEEEcCCCCE
Confidence 6666667777777666556543
No 387
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=76.19 E-value=55 Score=34.42 Aligned_cols=105 Identities=17% Similarity=0.247 Sum_probs=67.5
Q ss_pred EEEEecCCcc-----cccCCCceEEEECCCCc-EEEEeecCCeEEEEecCC-----------CCccccccCCCCCCCCce
Q 003205 203 ILMLDEDGVQ-----KVDDTLSQKMAVSPNGN-FVACFTHDGRLVVNNTNF-----------SSPVIDESCESALPPEQI 265 (839)
Q Consensus 203 v~l~~~~~~~-----~~~~~~i~~ia~Spng~-~iA~~~~~g~i~i~ssd~-----------~~~l~e~~~~~~~~p~~~ 265 (839)
.|.|+.+-.. ......++.++-.|..+ .+++++++|.+-+|+-.- +..+.|...+ +..|..+
T Consensus 161 ~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FH-pk~p~~L 239 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFH-PKNPEHL 239 (319)
T ss_pred eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheecc-CCCchhe
Confidence 4666555322 23334489999999875 577888999877775331 1223444455 4578889
Q ss_pred eeecCceEEEEecCE--EEEEcCCCCceEeccCCCeEE-eecCCce
Q 003205 266 AWCGMDSVLLYWNDM--LVMVAPQAEPVQYFYDEPLVL-IPECDGV 308 (839)
Q Consensus 266 ~WcG~d~vv~~~~~~--l~lig~~~~~v~f~~~~~~~l-~~E~DGv 308 (839)
-=|.+|.-+..|+.. ..=+|++.+-++-|..++++= .-|++|+
T Consensus 240 ft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~l 285 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSL 285 (319)
T ss_pred eEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeecc
Confidence 899999999999863 444777776666666655442 2455554
No 388
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=74.30 E-value=21 Score=36.97 Aligned_cols=75 Identities=16% Similarity=0.266 Sum_probs=46.6
Q ss_pred eeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCC-CCc-cc-cCCCCCcc-------ccccCeEEEEEECCeEEE
Q 003205 78 ISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIH-AEL-IE-PNASMGKE-------CFEENVVECVFWGNGVVC 147 (839)
Q Consensus 78 l~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~-G~~-~~-~~~g~~~~-------~~~~~V~~~~~~~~G~v~ 147 (839)
+..|... .+++.+.-. +..|++++.+|.+++||+. ++. .. .++.+-.. .....|..+.+.++|..+
T Consensus 6 ~P~i~Lg---s~~~~l~~~-~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~Pi 81 (219)
T PF07569_consen 6 LPPIVLG---SPVSFLECN-GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPI 81 (219)
T ss_pred cCcEecC---CceEEEEeC-CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEE
Confidence 3555543 456666643 5558999999999999975 332 11 11111110 115678899999999988
Q ss_pred Eec-CCeEEE
Q 003205 148 VTE-ANRYFC 156 (839)
Q Consensus 148 ~t~-~~~~~~ 156 (839)
++. +++.|.
T Consensus 82 V~lsng~~y~ 91 (219)
T PF07569_consen 82 VTLSNGDSYS 91 (219)
T ss_pred EEEeCCCEEE
Confidence 885 455543
No 389
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=74.17 E-value=15 Score=39.87 Aligned_cols=118 Identities=12% Similarity=0.103 Sum_probs=70.9
Q ss_pred EeCCCCCCCCcEEEEEEeCCeEEEEecCCcc---------cccCCCceEEEECC-CCcEEEEeecCCeEEEEecCCCCc-
Q 003205 182 VIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---------KVDDTLSQKMAVSP-NGNFVACFTHDGRLVVNNTNFSSP- 250 (839)
Q Consensus 182 vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~---------~~~~~~i~~ia~Sp-ng~~iA~~~~~g~i~i~ssd~~~~- 250 (839)
|+..+|-..++.++-.-.+|.|+.+|..... .-|...|+.+.+=- +++++..-..+|+|.+|+--+.+.
T Consensus 255 VfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~ 334 (425)
T KOG2695|consen 255 VFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCK 334 (425)
T ss_pred HHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcc
Confidence 5555565555555555568999999987432 23445555554433 567777777899999997554443
Q ss_pred --cccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCCceEecc--CCCeEEeecCCc-eEEEccCcceeeeccchh
Q 003205 251 --VIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFY--DEPLVLIPECDG-VRILSNSSMEFLQRVPAS 325 (839)
Q Consensus 251 --l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~--~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~ 325 (839)
+..|..|.. +. .++.+-. .+.+++...=|+ .|||+.++..+|..+|-.
T Consensus 335 ~~V~qYeGHvN----------~~-----------------a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 335 KSVMQYEGHVN----------LS-----------------AYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cceeeeecccc----------cc-----------------cccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 333333310 00 0111111 234555556666 899999999999999876
Q ss_pred h
Q 003205 326 T 326 (839)
Q Consensus 326 ~ 326 (839)
.
T Consensus 388 ~ 388 (425)
T KOG2695|consen 388 Y 388 (425)
T ss_pred C
Confidence 4
No 390
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=74.09 E-value=67 Score=38.57 Aligned_cols=154 Identities=18% Similarity=0.239 Sum_probs=81.5
Q ss_pred CCeEEEeecCCCeE-EEEEeCCeEEEEeCC-CCcc---ccCCCCCccccccCeEEEEE--------ECCeEEEEec-CC-
Q 003205 88 GRLIGMSWSEDQTL-ICVVQDGTVYRYNIH-AELI---EPNASMGKECFEENVVECVF--------WGNGVVCVTE-AN- 152 (839)
Q Consensus 88 ~~I~~~~fs~de~L-v~v~~dGtv~l~~~~-G~~~---~~~~g~~~~~~~~~V~~~~~--------~~~G~v~~t~-~~- 152 (839)
++|+++.|..+++. +++.++|.|.+|++. +.+. +....+ ...|.--+| -.+.++++.. ++
T Consensus 130 ~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~-----~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~ 204 (670)
T PF10395_consen 130 DKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKS-----SINVSYSKFVNDFELENGKDLLLTVSQLSNS 204 (670)
T ss_pred cceEEEEEecCCCEEEEEEcCCcEEEEecccccccccccccccc-----ccceehhhhhcccccccCCceEEEEEEcCCC
Confidence 79999999987775 799999999999982 2221 111112 222221122 1244444444 22
Q ss_pred -eEEEEecC--CCceEEEcCCCCC---CCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-------c--cc--
Q 003205 153 -RYFCMADF--ATMKVCELARPEV---EELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-------K--VD-- 215 (839)
Q Consensus 153 -~~~~v~~~--~~~~~~~l~~~~~---~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-------~--~~-- 215 (839)
-.|.+-.+ ++.....+.+.-. +......+- .+|..-.+ .+++|..++...++ . ..
T Consensus 205 k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y------~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~ 276 (670)
T PF10395_consen 205 KLSYKLISLSNESSSIFELSSTILENFGLEDSKFCY------QFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKE 276 (670)
T ss_pred cEEEEEEEeccCCcceEEeehheeccCCcccceEEE------eCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccc
Confidence 12322222 2222222221000 000111111 14444444 67788888876654 1 11
Q ss_pred -CCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCC
Q 003205 216 -DTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCE 257 (839)
Q Consensus 216 -~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~ 257 (839)
...|+-.++||| .+-+ +.+++|++++-.|...+.||++.
T Consensus 277 ~~~~vSl~~~s~n--RvLL-s~~nkIyLld~~~~siLse~~~s 316 (670)
T PF10395_consen 277 SDDLVSLKPPSPN--RVLL-SVNNKIYLLDLKFESILSEFELS 316 (670)
T ss_pred cccceEeecCCCC--eEEE-EcCCEEEEEeehhhhhhhhhhcc
Confidence 245666677777 3333 45679999999999999999843
No 391
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=73.88 E-value=19 Score=35.68 Aligned_cols=28 Identities=18% Similarity=0.455 Sum_probs=23.3
Q ss_pred CeEEEeecCCC------e-EEEEEeCCeEEEEeCC
Q 003205 89 RLIGMSWSEDQ------T-LICVVQDGTVYRYNIH 116 (839)
Q Consensus 89 ~I~~~~fs~de------~-Lv~v~~dGtv~l~~~~ 116 (839)
.+++++|||-| . |++++.+|.+.+|...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 79999999943 2 6899999999999644
No 392
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=73.41 E-value=40 Score=37.74 Aligned_cols=62 Identities=21% Similarity=0.183 Sum_probs=35.7
Q ss_pred eEEEEecCCcc----cccCCCceEEEECCCCcEEEEeecCC-------eEEEEecCCCCccccccCCCCCCCCceeeec
Q 003205 202 GILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDG-------RLVVNNTNFSSPVIDESCESALPPEQIAWCG 269 (839)
Q Consensus 202 tv~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~~~~g-------~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG 269 (839)
.|+.++..+.+ -.....+..+-|||.-..+..|+..| .||+.+.|-+.. .-...+ ..+.|||
T Consensus 169 ~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~-~~v~~~-----~~~e~~g 241 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV-KKVHRR-----MEGESVG 241 (386)
T ss_dssp EEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS--------TTEEEE
T ss_pred eEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc-eeeecC-----CCCcccc
Confidence 45555555433 23445678999999988888888766 599998884433 222111 2478886
No 393
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=73.24 E-value=1.3e+02 Score=31.77 Aligned_cols=61 Identities=16% Similarity=0.277 Sum_probs=41.5
Q ss_pred EcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCC
Q 003205 40 CAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIH 116 (839)
Q Consensus 40 ~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~ 116 (839)
++.+|..++++. .+| +.+|+. ++.....+.- . ..|..+...|+-.++++..||++++|++.
T Consensus 3 ~~~~~~~L~vGt------------~~G-l~~~~~~~~~~~~~i~~-~--~~I~ql~vl~~~~~llvLsd~~l~~~~L~ 64 (275)
T PF00780_consen 3 ADSWGDRLLVGT------------EDG-LYVYDLSDPSKPTRILK-L--SSITQLSVLPELNLLLVLSDGQLYVYDLD 64 (275)
T ss_pred cccCCCEEEEEE------------CCC-EEEEEecCCccceeEee-c--ceEEEEEEecccCEEEEEcCCccEEEEch
Confidence 445666666664 245 677776 4444444432 2 45999999998888877788999999764
No 394
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=71.19 E-value=10 Score=44.84 Aligned_cols=83 Identities=7% Similarity=0.097 Sum_probs=59.8
Q ss_pred cCCceEEEEc--CCCCceeEEEecCCCCCeEEEeecC--CCeEEEEEeCCeEEEEeCCC--CccccCCCCCccccccCeE
Q 003205 63 SALRKLRIFN--SAGVLISETVWKNPGGRLIGMSWSE--DQTLICVVQDGTVYRYNIHA--ELIEPNASMGKECFEENVV 136 (839)
Q Consensus 63 ~~~~~I~iy~--~~G~ll~ti~~~~~~~~I~~~~fs~--de~Lv~v~~dGtv~l~~~~G--~~~~~~~g~~~~~~~~~V~ 136 (839)
+..+.|++|+ ..|.++-+++.|. ..|.+++|.. .+++.+-+.||||+.|+..- +.-+..... ...|+
T Consensus 177 shg~~i~vwd~r~gs~pl~s~K~~v--s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt-----~~piw 249 (1081)
T KOG0309|consen 177 SHGNDIFVWDLRKGSTPLCSLKGHV--SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT-----NFPIW 249 (1081)
T ss_pred ccCCceEEEeccCCCcceEEecccc--eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc-----cCcce
Confidence 3578899999 4678999999988 8999999986 45678999999999998642 222222222 44577
Q ss_pred EEEEEC--CeEEEEecCC
Q 003205 137 ECVFWG--NGVVCVTEAN 152 (839)
Q Consensus 137 ~~~~~~--~G~v~~t~~~ 152 (839)
-.++-| .|..++-..|
T Consensus 250 ~~r~~Pfg~g~~~mp~~G 267 (1081)
T KOG0309|consen 250 RGRYLPFGEGYCIMPMVG 267 (1081)
T ss_pred eccccccCceeEeccccC
Confidence 777755 6666665544
No 395
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.19 E-value=8 Score=43.98 Aligned_cols=68 Identities=15% Similarity=0.310 Sum_probs=44.5
Q ss_pred EEEEecCchhhhhhcccCCceEEEEc--CCCCceeE--EEe----cCCCCCeEEEeecCCCeEEEEEeCCeEEEEe-CCC
Q 003205 47 IAVIRDDSKIVQLYAESALRKLRIFN--SAGVLISE--TVW----KNPGGRLIGMSWSEDQTLICVVQDGTVYRYN-IHA 117 (839)
Q Consensus 47 IA~~~d~~k~~~~~~~~~~~~I~iy~--~~G~ll~t--i~~----~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~-~~G 117 (839)
||...++.-++. .+.|+++++|+ +.|.-++| .+| |. ..|.+++|-.+-. -+++-||.+.+|| +-|
T Consensus 741 i~AidNENSFiS---ASkDKTVKLWSik~EgD~~~tsaCQfTY~aHk--k~i~~igfL~~lr-~i~ScD~giHlWDPFig 814 (1034)
T KOG4190|consen 741 IAAIDNENSFIS---ASKDKTVKLWSIKPEGDEIGTSACQFTYQAHK--KPIHDIGFLADLR-SIASCDGGIHLWDPFIG 814 (1034)
T ss_pred HHhcccccceee---ccCCceEEEEEeccccCccccceeeeEhhhcc--Ccccceeeeeccc-eeeeccCcceeeccccc
Confidence 444445444442 24699999999 45555553 444 44 6899999985543 4667788899997 456
Q ss_pred Ccc
Q 003205 118 ELI 120 (839)
Q Consensus 118 ~~~ 120 (839)
.++
T Consensus 815 r~L 817 (1034)
T KOG4190|consen 815 RLL 817 (1034)
T ss_pred chh
Confidence 653
No 396
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=70.93 E-value=43 Score=40.14 Aligned_cols=105 Identities=17% Similarity=0.344 Sum_probs=62.5
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCcee-EEEecCCCCCeEEEeec--CCCe-EEEEEeCCeEEE
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLIS-ETVWKNPGGRLIGMSWS--EDQT-LICVVQDGTVYR 112 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~-ti~~~~~~~~I~~~~fs--~de~-Lv~v~~dGtv~l 112 (839)
.+..|. -+-+|++. +....+.||+..|..+. +-.+.. .+.|.+++|+ ||++ ++.|.-...|.+
T Consensus 34 li~gss-~~k~a~V~-----------~~~~~LtIWD~~~~~lE~~~~f~~-~~~I~dLDWtst~d~qsiLaVGf~~~v~l 100 (631)
T PF12234_consen 34 LISGSS-IKKIAVVD-----------SSRSELTIWDTRSGVLEYEESFSE-DDPIRDLDWTSTPDGQSILAVGFPHHVLL 100 (631)
T ss_pred eEeecc-cCcEEEEE-----------CCCCEEEEEEcCCcEEEEeeeecC-CCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence 555555 55677774 25789999997665543 333332 3789999998 5777 467777888999
Q ss_pred EeC-CCCcc----------ccCCCCCccccccCeEEEEEE-CCeEEEEecCCeEEEEe
Q 003205 113 YNI-HAELI----------EPNASMGKECFEENVVECVFW-GNGVVCVTEANRYFCMA 158 (839)
Q Consensus 113 ~~~-~G~~~----------~~~~g~~~~~~~~~V~~~~~~-~~G~v~~t~~~~~~~v~ 158 (839)
|.. .-.+. +..+.. .. ...|.+ ..| ++|..++..++.++...
T Consensus 101 ~~Q~R~dy~~~~p~w~~i~~i~i~~-~T--~h~Igd-s~Wl~~G~LvV~sGNqlfv~d 154 (631)
T PF12234_consen 101 YTQLRYDYTNKGPSWAPIRKIDISS-HT--PHPIGD-SIWLKDGTLVVGSGNQLFVFD 154 (631)
T ss_pred EEccchhhhcCCcccceeEEEEeec-CC--CCCccc-eeEecCCeEEEEeCCEEEEEC
Confidence 952 21111 111100 00 123444 345 48888877777766543
No 397
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=70.83 E-value=1.9e+02 Score=32.63 Aligned_cols=174 Identities=14% Similarity=0.132 Sum_probs=96.2
Q ss_pred CceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEe---CCeEEEEeCC-CCcccc-CCCCCccccccCeEEE
Q 003205 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQ---DGTVYRYNIH-AELIEP-NASMGKECFEENVVEC 138 (839)
Q Consensus 65 ~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~---dGtv~l~~~~-G~~~~~-~~g~~~~~~~~~V~~~ 138 (839)
++.|.+.+.....+...---. .....+.|+|+++ +.++.. ++++.+.+.. ++.... ..|. .. ..+
T Consensus 95 ~~~v~vid~~~~~~~~~~~vG--~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~------~P-~~~ 165 (381)
T COG3391 95 SNTVSVIDTATNTVLGSIPVG--LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN------TP-TGV 165 (381)
T ss_pred CCeEEEEcCcccceeeEeeec--cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC------Cc-ceE
Confidence 678888884444333322222 3568899999985 544444 5788888754 444333 2222 12 567
Q ss_pred EEECCeE-EEEec--CCeEEEEecCCCceEEEcCCCC--CCCCCceEEE-eCCCCCCCCcEEEEEEeC---CeEEEEecC
Q 003205 139 VFWGNGV-VCVTE--ANRYFCMADFATMKVCELARPE--VEELPHCVAV-IEPKYTMTGSVEVLIGTD---AGILMLDED 209 (839)
Q Consensus 139 ~~~~~G~-v~~t~--~~~~~~v~~~~~~~~~~l~~~~--~~~~~~~w~v-i~~~~S~~~~~~v~~s~d---~tv~l~~~~ 209 (839)
.+.++|. ++++. ++.+..++ .+.....+ +... ......-|.+ +.| +|+........ +++..++..
T Consensus 166 a~~p~g~~vyv~~~~~~~v~vi~-~~~~~v~~-~~~~~~~~~~~~P~~i~v~~----~g~~~yV~~~~~~~~~v~~id~~ 239 (381)
T COG3391 166 AVDPDGNKVYVTNSDDNTVSVID-TSGNSVVR-GSVGSLVGVGTGPAGIAVDP----DGNRVYVANDGSGSNNVLKIDTA 239 (381)
T ss_pred EECCCCCeEEEEecCCCeEEEEe-CCCcceec-cccccccccCCCCceEEECC----CCCEEEEEeccCCCceEEEEeCC
Confidence 7888777 44444 34454444 44333333 2211 1111111323 444 88855444443 488888777
Q ss_pred Ccc-c-----ccCCCceEEEECCCCcEEEEeec-CCeEEEEecCCCCcccc
Q 003205 210 GVQ-K-----VDDTLSQKMAVSPNGNFVACFTH-DGRLVVNNTNFSSPVID 253 (839)
Q Consensus 210 ~~~-~-----~~~~~i~~ia~Spng~~iA~~~~-~g~i~i~ssd~~~~l~e 253 (839)
... . .....-..++++|+|+++-.... .+++.+.+.........
T Consensus 240 ~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 240 TGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred CceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 543 1 11113457999999998777644 47788888775555433
No 398
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=68.42 E-value=15 Score=38.00 Aligned_cols=87 Identities=7% Similarity=0.066 Sum_probs=48.7
Q ss_pred CCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEE----eCCCCccccCCCCCccccccCeEEEE
Q 003205 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRY----NIHAELIEPNASMGKECFEENVVECV 139 (839)
Q Consensus 64 ~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~----~~~G~~~~~~~g~~~~~~~~~V~~~~ 139 (839)
..-+|.|||.+|+++.++...........|.|..-..=-....+|.|.+- +-.|+-......- ...|..+.
T Consensus 122 ~~v~i~I~d~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~a~~~~G~~~~~~~~~-----~g~V~~V~ 196 (221)
T PRK12634 122 GFVNFEITDANGAFVKQISVPASAAGEVSFAWDGTDANGNRMAAGKYGVTATQTDTAGSKSKLSTYV-----QAPVDSVT 196 (221)
T ss_pred CeEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeeEEEEEEEeCCCcEEeeeeeE-----EEEEEEEE
Confidence 45689999999999999987432234688999652111112245554322 3456532211111 33466677
Q ss_pred EECCeEEEEecCCeEE
Q 003205 140 FWGNGVVCVTEANRYF 155 (839)
Q Consensus 140 ~~~~G~v~~t~~~~~~ 155 (839)
+-++|..+....+..+
T Consensus 197 ~~~~g~~L~l~g~~~v 212 (221)
T PRK12634 197 IGSDGLYLNLTGLGTS 212 (221)
T ss_pred ecCCceEEEecCCcEE
Confidence 6666755554443333
No 399
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=68.26 E-value=28 Score=42.53 Aligned_cols=129 Identities=9% Similarity=0.038 Sum_probs=77.8
Q ss_pred cCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCeEEEEE---------eCCeEEEEeCCC--C--ccccCCCCCc
Q 003205 63 SALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLICVV---------QDGTVYRYNIHA--E--LIEPNASMGK 128 (839)
Q Consensus 63 ~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~---------~dGtv~l~~~~G--~--~~~~~~g~~~ 128 (839)
...|+|.+-++ +-+.+.++..|+ +.|.+|.-. +..|+++. -|..|+|||+.- . .+++..|.
T Consensus 194 ~t~G~V~LrD~~s~~~iht~~aHs--~siSDfDv~-GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-- 268 (1118)
T KOG1275|consen 194 DTRGTVFLRDPNSFETIHTFDAHS--GSISDFDVQ-GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-- 268 (1118)
T ss_pred cccceEEeecCCcCceeeeeeccc--cceeeeecc-CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc--
Confidence 46789999996 557899999999 988887765 22345433 244567776531 1 13333333
Q ss_pred cccccCeEEEEEEC---CeEEEEecCCeEEEEec--CCCce-EEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCe
Q 003205 129 ECFEENVVECVFWG---NGVVCVTEANRYFCMAD--FATMK-VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAG 202 (839)
Q Consensus 129 ~~~~~~V~~~~~~~---~G~v~~t~~~~~~~v~~--~~~~~-~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~t 202 (839)
.-++|.| +-++|.+.+|.+-.++- ...|. ...... +. ++.+... .+|++|+.+++...+|.
T Consensus 269 -------~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~-p~--~s~i~~f---DiSsn~~alafgd~~g~ 335 (1118)
T KOG1275|consen 269 -------QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVN-PN--GSGISAF---DISSNGDALAFGDHEGH 335 (1118)
T ss_pred -------hhhhhcccccceEEEEecccceeeccccccCCCccceeEEc-cC--CCcceeE---EecCCCceEEEecccCc
Confidence 3467766 66667777777655542 22231 111111 11 1112222 45679999999999999
Q ss_pred EEEEecC
Q 003205 203 ILMLDED 209 (839)
Q Consensus 203 v~l~~~~ 209 (839)
|-+|...
T Consensus 336 v~~wa~~ 342 (1118)
T KOG1275|consen 336 VNLWADR 342 (1118)
T ss_pred EeeecCC
Confidence 9999744
No 400
>PF10493 Rod_C: Rough deal protein C-terminal region; InterPro: IPR019527 Rod, the Rough deal protein (also known as Kinetochore-associated protein 1) displays a dynamic intracellular staining pattern, localising first to kinetochores in pro-metaphase, but moving to kinetochore microtubules at metaphase. Early in anaphase the protein is once again restricted to the kinetochores, where it persists until the end of telophase. This behaviour is in all respects similar to that described for ZW10 [], and indeed the two proteins function together, localisation of each depending upon the other []. These two proteins are found at the kinetochore in complex with a third, Zwilch, in both flies and humans. The C- terminus is the most conserved part of the protein. During pro-metaphase, the ZW10-Rod complex, dynein/dynactin, and Mad2 all accumulate on unattached kinetochores; microtubule capture leads to Mad2 depletion as it is carried off by dynein/dynactin; ZW10-Rod complex accumulation continues, replenishing kinetochore dynein. The continuing recruitment of the ZW10-Rod complex during metaphase may serve to maintain adequate dynein/dynactin complex on kinetochores for assisting chromatid movement during anaphase[]. The ZW10-Rod complex acts as a bridge whose association with Zwint-1 links Mad1 and Mad2, components that are directly responsible for generating the diffusible 'wait anaphase' signal, to a structural, inner kinetochore complex containing Mis12 and KNL-1AF15q14, the last of which has been proved to be essential for kinetochore assembly in Caenorhabditis elegans. Removal of ZW10 or Rod inactivates the mitotic checkpoint [].
Probab=68.25 E-value=1.2e+02 Score=36.09 Aligned_cols=161 Identities=17% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhhccCCCCCcccccHHHHHhCChHHHHHHHHHc-CChHHHHHHHHHh----------------------
Q 003205 407 RIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINA-NCHLLALRISEYL---------------------- 463 (839)
Q Consensus 407 ~fv~~c~~LRvLn~lr~~~igi~lT~~Q~~~l~~~~li~rL~~r-~~~~lA~~I~~~l---------------------- 463 (839)
.|.+.+-.++-|.. .|+|.|++.|..-.-++|+..|..+ .+=..|.++.--|
T Consensus 336 ~~Lk~~~yl~~Le~-----l~i~~t~~~F~~~~K~~Lik~Lwk~h~~~p~alrliA~Lcley~i~dpqlWn~iL~~l~~~ 410 (551)
T PF10493_consen 336 IYLKCLIYLAELEE-----LNIPYTIESFESCDKEGLIKSLWKNHSHNPQALRLIAELCLEYDIYDPQLWNGILQQLLGF 410 (551)
T ss_pred HHHHHHHHHHHHHh-----cCCCccHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q ss_pred --------------CCCh-----------hhHHHHhHhhhhhhcCCCChHHHHHHHHHHhccCC---CCCHHHHHHHHHH
Q 003205 464 --------------GMNQ-----------EVVIMHWACSKITASLAIPDVTLLEILLDKLKLCK---GISYAAVAAHADK 515 (839)
Q Consensus 464 --------------~~~~-----------~~I~~~WA~~kI~~~~~~~D~~l~~~I~~kl~~~~---~is~~~IA~~A~~ 515 (839)
+.|. ..|+.++=..-. .-...+..+.+..=...|..|| ..++..||+...+
T Consensus 411 ~mi~~L~~lL~~is~~~~l~~i~~~~~aW~~vi~~Pf~~a~-~~~s~~q~~~~~~~l~~l~~CPv~~~ldl~~ia~~~~~ 489 (551)
T PF10493_consen 411 NMISYLRKLLDAISSIPSLWQIPGFSMAWQRVIQAPFSSAS-CPPSPDQNEQCCKSLVLLLKCPVLHDLDLIGIAKQCIQ 489 (551)
T ss_pred hHHHHHHHHHHHhcCChhhhcCccHHHHHHHHHHHHHHhCC-CCCChHHHHHHHHHHHHHHcCCccccccHHHHHHHHHH
Q ss_pred hCcHHHHHHHHhcCCCCCCchhhhhccCchHHHHHHHHHcCCchHHHHHHHHHHhhCChhHHHHHHhc
Q 003205 516 SGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQT 583 (839)
Q Consensus 516 ~gR~~LA~~Ll~~E~~~~~qV~lLl~~~~~~~AL~~Ai~S~D~dLI~~vll~l~~~l~~~~f~~~l~~ 583 (839)
.+|+.+|.-.|-.=|..++|-..+-++ +.++|++-+..=+..+.++=-.+-|..-+.+
T Consensus 490 ~~~~~~Al~~Ll~~~~~~~~~~~i~~~----------~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~ 547 (551)
T PF10493_consen 490 LKLPAFALACLLLFPQSEKRKQQIQKL----------LASCNPETLLQQIEELMNTGELAGFASQIRS 547 (551)
T ss_pred cCCHHHHHHHHhhCccchhHHHHHHHH----------HHcCCHHHHHHHHHHHHhcCcHHHHHHHHHH
No 401
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=67.14 E-value=24 Score=38.42 Aligned_cols=143 Identities=8% Similarity=0.002 Sum_probs=82.8
Q ss_pred EEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEec--CCeEEEEecCCC-----ceEEEcCCCCCC
Q 003205 102 ICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTE--ANRYFCMADFAT-----MKVCELARPEVE 174 (839)
Q Consensus 102 v~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~--~~~~~~v~~~~~-----~~~~~l~~~~~~ 174 (839)
+.+..+..|-+-|..+...+.+. . ..+|...+|...|-.+..+ ++.++.++-... -...+|.- +
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~-s-----ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh---~ 298 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ-S-----KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYH---D 298 (425)
T ss_pred ecccccceeEEEEeecccccccc-c-----chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEc---C
Confidence 34555566777776555433332 2 3456666666644444443 566655542111 01122221 1
Q ss_pred CCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc--------cccCC--CceEEEECCCCcEEEEeecCCeEEEEe
Q 003205 175 ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--------KVDDT--LSQKMAVSPNGNFVACFTHDGRLVVNN 244 (839)
Q Consensus 175 ~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~--------~~~~~--~i~~ia~Spng~~iA~~~~~g~i~i~s 244 (839)
+...|..++.- +++.++.-+.+|+|.+||..-.+ .+|.. ...-.-+.|...+|+.+++|=...||+
T Consensus 299 Ssvtslq~Lq~----s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWs 374 (425)
T KOG2695|consen 299 SSVTSLQILQF----SQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWS 374 (425)
T ss_pred cchhhhhhhcc----ccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEe
Confidence 23444444432 56677777779999999987432 23322 122344556667888899999999999
Q ss_pred cCCCCccccccCC
Q 003205 245 TNFSSPVIDESCE 257 (839)
Q Consensus 245 sd~~~~l~e~~~~ 257 (839)
.+-++.+++....
T Consensus 375 l~~ghLl~tipf~ 387 (425)
T KOG2695|consen 375 LDSGHLLCTIPFP 387 (425)
T ss_pred cccCceeeccCCC
Confidence 9989999887654
No 402
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=66.63 E-value=1.2e+02 Score=33.65 Aligned_cols=101 Identities=14% Similarity=0.123 Sum_probs=49.8
Q ss_pred CEEEEcCCCC-eEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCe---EEEeec-CCC-eE-EEEEeC
Q 003205 36 NKVACAPFGG-PIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRL---IGMSWS-EDQ-TL-ICVVQD 107 (839)
Q Consensus 36 ~~va~sp~Gg-~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I---~~~~fs-~de-~L-v~v~~d 107 (839)
..+..+|+|. .++...++. ...-.+.+++. .|..-..+.-.. .+.| ..+.|. +++ .+ .+...|
T Consensus 187 ~~v~W~~d~~~l~~~~~nR~--------q~~~~l~~~d~~tg~~~~~~~e~~-~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 187 TRVGWSPDGKRLWVQWLNRD--------QNRLDLVLCDASTGETRVVLEETS-DGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp EEEEEEETTEEEEEEEEETT--------STEEEEEEEEECTTTCEEEEEEES-SSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred ccceecCCCcEEEEEEcccC--------CCEEEEEEEECCCCceeEEEEecC-CcceeeecccccccCCCCEEEEEEEcC
Confidence 3677778888 555544432 12344555554 333211111111 1333 255554 544 44 466688
Q ss_pred CeEEEE--eCCCCccc-cCCCCCccccccCeEEEEEEC--CeEEEEecC
Q 003205 108 GTVYRY--NIHAELIE-PNASMGKECFEENVVECVFWG--NGVVCVTEA 151 (839)
Q Consensus 108 Gtv~l~--~~~G~~~~-~~~g~~~~~~~~~V~~~~~~~--~G~v~~t~~ 151 (839)
|--+|| +..|...+ ...| ...|.++..|+ ++.+..+++
T Consensus 258 G~~hly~~~~~~~~~~~lT~G------~~~V~~i~~~d~~~~~iyf~a~ 300 (353)
T PF00930_consen 258 GYRHLYLYDLDGGKPRQLTSG------DWEVTSILGWDEDNNRIYFTAN 300 (353)
T ss_dssp SSEEEEEEETTSSEEEESS-S------SS-EEEEEEEECTSSEEEEEES
T ss_pred CCcEEEEEcccccceeccccC------ceeecccceEcCCCCEEEEEec
Confidence 887777 67766533 2332 34565544443 566666654
No 403
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=66.08 E-value=16 Score=38.18 Aligned_cols=85 Identities=11% Similarity=0.135 Sum_probs=48.7
Q ss_pred CCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEE----eCCCCccccCCCCCccccccCeEEEE
Q 003205 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRY----NIHAELIEPNASMGKECFEENVVECV 139 (839)
Q Consensus 64 ~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~----~~~G~~~~~~~g~~~~~~~~~V~~~~ 139 (839)
..-+|.|||.+|+++.++...........|.|..-..--....+|.|.+- +-.|+......-. ...|..+.
T Consensus 129 ~~v~v~I~D~~G~vV~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~V~a~~~~G~~~~~~~~~-----~~~V~~V~ 203 (230)
T PRK12633 129 TKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPLADGKYSITVSASDADAKPVKAEALT-----YGQVKSVA 203 (230)
T ss_pred cEEEEEEEeCCCCEEEEEecCCCCCCceeEEECCCCCCCCcCCCcceEEEEEEEeCCCcEEeeeeeE-----EEEEEEEE
Confidence 46789999999999999987432244678889753221222356654432 2355542211100 23466777
Q ss_pred EECCeEEEEecCCe
Q 003205 140 FWGNGVVCVTEANR 153 (839)
Q Consensus 140 ~~~~G~v~~t~~~~ 153 (839)
+.++|..+....+.
T Consensus 204 ~~~~~~~l~l~~~~ 217 (230)
T PRK12633 204 YSTNGLRLDLGLAG 217 (230)
T ss_pred ecCCceEEEEcCCc
Confidence 66666555554443
No 404
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=65.63 E-value=83 Score=35.73 Aligned_cols=169 Identities=13% Similarity=0.140 Sum_probs=79.7
Q ss_pred CCceEEEEcCCCC-ceeEEEec------CCCCCeEEEeecC-----CC----eEEEEEeCCeEEEEeC----CCCccccC
Q 003205 64 ALRKLRIFNSAGV-LISETVWK------NPGGRLIGMSWSE-----DQ----TLICVVQDGTVYRYNI----HAELIEPN 123 (839)
Q Consensus 64 ~~~~I~iy~~~G~-ll~ti~~~------~~~~~I~~~~fs~-----de----~Lv~v~~dGtv~l~~~----~G~~~~~~ 123 (839)
.++.+-|.|..|- .|-+-... .....|.++.|+- |+ .|+|++..|.+.+|.+ .|.+....
T Consensus 105 ~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~ 184 (395)
T PF08596_consen 105 ESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQF 184 (395)
T ss_dssp TTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEE
T ss_pred cCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEE
Confidence 4678888888884 33331111 1124688899982 44 2579999999999953 24442211
Q ss_pred CCCCccccccCeEEEEEE-----------------------CCeEEEEecCCeEEEEecCCCceEEEcCCCCCCCCCceE
Q 003205 124 ASMGKECFEENVVECVFW-----------------------GNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCV 180 (839)
Q Consensus 124 ~g~~~~~~~~~V~~~~~~-----------------------~~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w 180 (839)
.+.. ......|..+... -.|.+++++...+..+.........+..+ ....|.
T Consensus 185 ~~~~-~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~----~~~~~~ 259 (395)
T PF08596_consen 185 AGAT-TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFD----DPFLCS 259 (395)
T ss_dssp EEEE---SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-S----S-EEEE
T ss_pred eecc-ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeec----cccccc
Confidence 1110 0003334433321 15677777776665555433221111111 222333
Q ss_pred E--EeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----c----ccCCCceEEEECCCCcEEEEeecC
Q 003205 181 A--VIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----K----VDDTLSQKMAVSPNGNFVACFTHD 237 (839)
Q Consensus 181 ~--vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~----~~~~~i~~ia~Spng~~iA~~~~~ 237 (839)
. +++..-...+..++.+..+|.+.+++.-+-. . .+...+...+|+++|+.+...+..
T Consensus 260 ~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 260 SASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp EEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS
T ss_pred eEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCcc
Confidence 2 2221001245566777789999999887654 1 222346688999999977776554
No 405
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=65.58 E-value=13 Score=42.20 Aligned_cols=69 Identities=9% Similarity=0.065 Sum_probs=55.4
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeE-EEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeC
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISE-TVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNI 115 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~t-i~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~ 115 (839)
..+.++-.|.||+++ .++.|++|+.-|.--.| ++.-+ ..|..+.-|.+|..+.++=..++.+-++
T Consensus 566 ss~~tTesGyIa~as------------~kGDirLyDRig~rAKtalP~lG--~aIk~idvta~Gk~ilaTCk~yllL~d~ 631 (776)
T COG5167 566 SSGMTTESGYIAAAS------------RKGDIRLYDRIGKRAKTALPGLG--DAIKHIDVTANGKHILATCKNYLLLTDV 631 (776)
T ss_pred cccccccCceEEEec------------CCCceeeehhhcchhhhcCcccc--cceeeeEeecCCcEEEEeecceEEEEec
Confidence 456677788888886 58999999999987666 66665 7899999999999887777777877787
Q ss_pred CCCc
Q 003205 116 HAEL 119 (839)
Q Consensus 116 ~G~~ 119 (839)
.++.
T Consensus 632 ~ik~ 635 (776)
T COG5167 632 PIKY 635 (776)
T ss_pred cccc
Confidence 6654
No 406
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.40 E-value=43 Score=38.54 Aligned_cols=107 Identities=7% Similarity=-0.007 Sum_probs=68.6
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCC-----CCCeEEEeecCCCeEEEEEeCCe
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNP-----GGRLIGMSWSEDQTLICVVQDGT 109 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~-----~~~I~~~~fs~de~Lv~v~~dGt 109 (839)
...|.+.|++.-=-+. ++.-++ +-.++.|.=|++.=+=...+.|.+. ..+--+++=|.+|.+|+++.+|.
T Consensus 378 i~mv~~t~d~K~~Ql~-~e~Tlv----GLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~Gd 452 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLT-SEQTLV----GLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGD 452 (644)
T ss_pred cceeeccCCcchhccc-ccccEE----eecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCc
Confidence 3467777765432222 221111 2247778888876554555666441 13577888899999999999999
Q ss_pred EEEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEec
Q 003205 110 VYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTE 150 (839)
Q Consensus 110 v~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~ 150 (839)
||+|+--|...++-++- +-..|..+-++.+|..++..
T Consensus 453 IRLYdri~~~AKTAlPg----LG~~I~hVdvtadGKwil~T 489 (644)
T KOG2395|consen 453 IRLYDRIGRRAKTALPG----LGDAIKHVDVTADGKWILAT 489 (644)
T ss_pred EEeehhhhhhhhhcccc----cCCceeeEEeeccCcEEEEe
Confidence 99998777775544432 14457777777777765543
No 407
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=60.84 E-value=2.5e+02 Score=30.52 Aligned_cols=162 Identities=12% Similarity=0.156 Sum_probs=83.9
Q ss_pred ceEEEEcCCC--------CceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCCCCc--ccc-CCCCCccccccC
Q 003205 66 RKLRIFNSAG--------VLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAEL--IEP-NASMGKECFEEN 134 (839)
Q Consensus 66 ~~I~iy~~~G--------~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~--~~~-~~g~~~~~~~~~ 134 (839)
|.|.+|+... +++.+... . |.|.++.-- ++. +++..++++.+|++..+- ... +... ...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~-~--g~V~ai~~~-~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~-----~~~ 131 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEV-K--GPVTAICSF-NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDS-----PFY 131 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEE-S--S-EEEEEEE-TTE-EEEEETTEEEEEEEETTSSEEEEEEE-B-----SSS
T ss_pred cEEEEEEEEcccccceEEEEEEEEee-c--CcceEhhhh-CCE-EEEeecCEEEEEEccCcccchhhheecc-----eEE
Confidence 8899999665 23344444 2 788888766 666 555667889999865433 211 1111 335
Q ss_pred eEEEEEECCeEEEEecCCeEEEE--ecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCc-
Q 003205 135 VVECVFWGNGVVCVTEANRYFCM--ADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGV- 211 (839)
Q Consensus 135 V~~~~~~~~G~v~~t~~~~~~~v--~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~- 211 (839)
|.++...++=+++...-.-++.+ +. +......++. .....|.. ...|-++++.++..+.+|.++++..+..
T Consensus 132 i~sl~~~~~~I~vgD~~~sv~~~~~~~-~~~~l~~va~----d~~~~~v~-~~~~l~d~~~~i~~D~~gnl~~l~~~~~~ 205 (321)
T PF03178_consen 132 ITSLSVFKNYILVGDAMKSVSLLRYDE-ENNKLILVAR----DYQPRWVT-AAEFLVDEDTIIVGDKDGNLFVLRYNPEI 205 (321)
T ss_dssp EEEEEEETTEEEEEESSSSEEEEEEET-TTE-EEEEEE----ESS-BEEE-EEEEE-SSSEEEEEETTSEEEEEEE-SS-
T ss_pred EEEEeccccEEEEEEcccCEEEEEEEc-cCCEEEEEEe----cCCCccEE-EEEEecCCcEEEEEcCCCeEEEEEECCCC
Confidence 67777777755555443434333 32 2223445542 12233422 1122225567777777999988866521
Q ss_pred --------c------cccCCCceEE---EECC--CCc------EEEEeecCCeEEEE
Q 003205 212 --------Q------KVDDTLSQKM---AVSP--NGN------FVACFTHDGRLVVN 243 (839)
Q Consensus 212 --------~------~~~~~~i~~i---a~Sp--ng~------~iA~~~~~g~i~i~ 243 (839)
. -.....|+.+ ++.| .+. .+..+|.+|.|-+.
T Consensus 206 ~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 206 PNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 1 0112345555 6666 222 37777888887644
No 408
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=60.32 E-value=59 Score=34.38 Aligned_cols=66 Identities=20% Similarity=0.325 Sum_probs=44.8
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCC-------CCCeEEEeecCCCeEEEEEeCCe
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNP-------GGRLIGMSWSEDQTLICVVQDGT 109 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~-------~~~I~~~~fs~de~Lv~v~~dGt 109 (839)
.+++-|..|-+-+.++ ..+.|-+++.+|++++.+..... .-..-+|+|.++|.|.++++-+-
T Consensus 175 ~l~~~p~t~~lliLS~-----------es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNl 243 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSD-----------ESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNL 243 (248)
T ss_dssp EEEEETTTTEEEEEET-----------TTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTE
T ss_pred ceEEcCCCCeEEEEEC-----------CCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCce
Confidence 6777787777777775 46888999999999999888651 12578999999999999998775
Q ss_pred EEEE
Q 003205 110 VYRY 113 (839)
Q Consensus 110 v~l~ 113 (839)
.++|
T Consensus 244 fy~f 247 (248)
T PF06977_consen 244 FYRF 247 (248)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5544
No 409
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=60.10 E-value=4e+02 Score=32.65 Aligned_cols=83 Identities=17% Similarity=0.100 Sum_probs=58.5
Q ss_pred HHHHHHhCCChhHHHHhhccCCCCCCch--HHHH-----HHHh---cCCHHHHHHhhccCCCHHHHHHHHHHcCCHHHHH
Q 003205 728 KVFALATKRDWDALERFSKEKRPPIGYR--PFVE-----ACVD---ADEKGEALKYIPKLVDPRERAEAYARIGMAKEAA 797 (839)
Q Consensus 728 kl~ala~~~~w~~L~~f~~~KKspIgye--pfv~-----~~~~---~~~~~ea~~yI~~i~d~~~r~~~~~~~~~~~~A~ 797 (839)
++.++-..+.|.+--.++..++ ||+ ..++ .|+. +++... ..+..+.++.+++.++++--.|++|+
T Consensus 954 a~gay~sA~mwrec~si~~q~~---~~e~~~~AE~L~S~l~ve~R~~~da~~--i~l~yl~N~~eava~~ckgs~y~ea~ 1028 (1243)
T COG5290 954 AHGAYDSALMWRECGSISTQEK---GYEFNLCAELLPSDLLVEFRKAGDAEK--ILLTYLENLYEAVAMDCKGSEYREAF 1028 (1243)
T ss_pred HHHHHHHHHHHHHHhhHHhhhc---chHHHHHHHhhhhhHHHHHHHhcCHHH--HHHHHHhCHHHHHHHHcccccchHHH
Confidence 4567888889999888887554 333 2222 2332 333333 23333446889999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 003205 798 DAASQAKDGELLGRLKLT 815 (839)
Q Consensus 798 ~~a~~~kd~~~L~~i~~~ 815 (839)
-+|...|+.+.++.+..-
T Consensus 1029 ~~a~~s~~~e~~k~~~~~ 1046 (1243)
T COG5290 1029 CEAMVSRLVESEKHYEAG 1046 (1243)
T ss_pred HHHHHhhhhhHHHHhhhh
Confidence 999999999888887643
No 410
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=58.77 E-value=15 Score=44.36 Aligned_cols=174 Identities=12% Similarity=0.034 Sum_probs=100.3
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCeE-E-EEEeCC
Q 003205 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQTL-I-CVVQDG 108 (839)
Q Consensus 32 ~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~L-v-~v~~dG 108 (839)
+-....+|+|-.-.-+|+.. -.|.|++|| .+|.-..+.+.|+ +.|.-+.=|-||.+ + +.+...
T Consensus 1101 ~~~fTc~afs~~~~hL~vG~------------~~Geik~~nv~sG~~e~s~ncH~--SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGS------------HAGEIKIFNVSSGSMEESVNCHQ--SAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred ccceeeEEeecCCceEEeee------------ccceEEEEEccCccccccccccc--cccccccccCCcceeeeeccccC
Confidence 44556888888888888875 579999999 6899999999999 99999999999874 3 333232
Q ss_pred -eEEEEeCCCCc-cccCCCCCccccccCeEEEEEECCe-EEEEecCCeEEEEecCCC-ceEEEcCCCCCCCCCceEEEeC
Q 003205 109 -TVYRYNIHAEL-IEPNASMGKECFEENVVECVFWGNG-VVCVTEANRYFCMADFAT-MKVCELARPEVEELPHCVAVIE 184 (839)
Q Consensus 109 -tv~l~~~~G~~-~~~~~g~~~~~~~~~V~~~~~~~~G-~v~~t~~~~~~~v~~~~~-~~~~~l~~~~~~~~~~~w~vi~ 184 (839)
-..+|++...+ ..+++.. -..++|+..- +.++...++...+.+++. ..+.++-+...+ ....-.-
T Consensus 1167 PlsaLW~~~s~~~~~Hsf~e--------d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~---~~y~~n~ 1235 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHSFDE--------DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVT---SSYSNNL 1235 (1516)
T ss_pred chHHHhccccccCccccccc--------cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchh---hhhhccc
Confidence 46789765433 2223321 1346776532 222333334444545442 122221111111 1111133
Q ss_pred CCCCCCCcEEEEEEeCCeEEEEecCCccccc---C-CCceEEEECCCCcEEEEee
Q 003205 185 PKYTMTGSVEVLIGTDAGILMLDEDGVQKVD---D-TLSQKMAVSPNGNFVACFT 235 (839)
Q Consensus 185 ~~~S~~~~~~v~~s~d~tv~l~~~~~~~~~~---~-~~i~~ia~Spng~~iA~~~ 235 (839)
..|||+...++ .|| .+||....+..| + .-...=.|.|+|.-|.+-+
T Consensus 1236 a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1236 AHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS 1285 (1516)
T ss_pred cccCCCcceEe---eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec
Confidence 46888877665 344 588877554111 0 1112335788887766644
No 411
>PRK02888 nitrous-oxide reductase; Validated
Probab=58.59 E-value=83 Score=37.59 Aligned_cols=58 Identities=10% Similarity=0.165 Sum_probs=39.5
Q ss_pred CCCCCcEEEEEEeCCeEEEEecCC-----cc----cccCCCceEEEECCCCcEEEEeec-CCeEEEEecC
Q 003205 187 YTMTGSVEVLIGTDAGILMLDEDG-----VQ----KVDDTLSQKMAVSPNGNFVACFTH-DGRLVVNNTN 246 (839)
Q Consensus 187 ~S~~~~~~v~~s~d~tv~l~~~~~-----~~----~~~~~~i~~ia~Spng~~iA~~~~-~g~i~i~ssd 246 (839)
+.++|+...+ .+++|.++|... .. ..-...-+.|.+||||+++...+. ++++.|++..
T Consensus 284 ~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~ 351 (635)
T PRK02888 284 AVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR 351 (635)
T ss_pred hhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence 4556664443 357788888775 22 223344589999999998877665 6789888754
No 412
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=58.33 E-value=22 Score=43.15 Aligned_cols=212 Identities=13% Similarity=0.098 Sum_probs=116.1
Q ss_pred ceeEEEecCCCCCeEEEeecCCC-eEEEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCC--
Q 003205 77 LISETVWKNPGGRLIGMSWSEDQ-TLICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-- 152 (839)
Q Consensus 77 ll~ti~~~~~~~~I~~~~fs~de-~Lv~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-- 152 (839)
.+.+|.-+. .--.+.+||-++ +|++++-.|.|++|+. .|......-+| +..|.-+.-+-+|-..+|++-
T Consensus 1093 ~w~~frd~~--~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH-----~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1093 SWRSFRDET--ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCH-----QSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred cchhhhccc--cceeeEEeecCCceEEeeeccceEEEEEccCcccccccccc-----ccccccccccCCcceeeeecccc
Confidence 344454444 567889999865 5899999999999985 56665555566 666776666778888888642
Q ss_pred -eEEEEecCCCceEEEcCCCCCCCC-CceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc---c------ccCCCceE
Q 003205 153 -RYFCMADFATMKVCELARPEVEEL-PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---K------VDDTLSQK 221 (839)
Q Consensus 153 -~~~~v~~~~~~~~~~l~~~~~~~~-~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~---~------~~~~~i~~ 221 (839)
-...+|+..+- +. ..+. ..+-+| .||..-+.-++........++|.+.+. . ..+-.-+-
T Consensus 1166 ~PlsaLW~~~s~----~~---~~Hsf~ed~~v---kFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~ 1235 (1516)
T KOG1832|consen 1166 SPLSALWDASST----GG---PRHSFDEDKAV---KFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNL 1235 (1516)
T ss_pred CchHHHhccccc----cC---cccccccccee---ehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccc
Confidence 12233333210 00 0011 112223 565554544554444555677777654 1 11111256
Q ss_pred EEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCCceEeccC-CCeE
Q 003205 222 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYD-EPLV 300 (839)
Q Consensus 222 ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~-~~~~ 300 (839)
..|||+-++|- .||.+|=..+. +.+..||--+ ..+.| .|-+. ..++
T Consensus 1236 a~FsP~D~LIl---ndGvLWDvR~~--~aIh~FD~ft----------------------~~~~G------~FHP~g~eVI 1282 (1516)
T KOG1832|consen 1236 AHFSPCDTLIL---NDGVLWDVRIP--EAIHRFDQFT----------------------DYGGG------GFHPSGNEVI 1282 (1516)
T ss_pred cccCCCcceEe---eCceeeeeccH--HHHhhhhhhe----------------------ecccc------cccCCCceEE
Confidence 77888865442 57777755432 4444443221 01111 12222 2344
Q ss_pred EeecCCceEEEccCcceeeeccchhhHhhhccCCCChhhhHHHHH
Q 003205 301 LIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDAL 345 (839)
Q Consensus 301 l~~E~DGvRIit~~~~~~l~~Vp~~~~~vf~igS~~pga~L~~A~ 345 (839)
+-+|+ |.-....+|+.||.-- =..+.+.+.|.+.|-+.
T Consensus 1283 INSEI-----wD~RTF~lLh~VP~Ld--qc~VtFNstG~VmYa~~ 1320 (1516)
T KOG1832|consen 1283 INSEI-----WDMRTFKLLHSVPSLD--QCAVTFNSTGDVMYAML 1320 (1516)
T ss_pred eechh-----hhhHHHHHHhcCcccc--ceEEEeccCccchhhhh
Confidence 55554 4444567788888643 34566667777666554
No 413
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.09 E-value=2.7e+02 Score=30.00 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=49.1
Q ss_pred eEEEEcCCCC-ceeEEEecCCCCCe-EE-EeecCCCeEEEEEeC------CeEEEEeCC------CCccccCCCCCcccc
Q 003205 67 KLRIFNSAGV-LISETVWKNPGGRL-IG-MSWSEDQTLICVVQD------GTVYRYNIH------AELIEPNASMGKECF 131 (839)
Q Consensus 67 ~I~iy~~~G~-ll~ti~~~~~~~~I-~~-~~fs~de~Lv~v~~d------Gtv~l~~~~------G~~~~~~~g~~~~~~ 131 (839)
.--+|+++|. .+.++.-.. ++- .+ =.|||||.++-+++| |.|-+|+.. ||+.++-+|.
T Consensus 92 f~~vfD~~~~~~pv~~~s~~--~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGp----- 164 (366)
T COG3490 92 FAMVFDPNGAQEPVTLVSQE--GRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGP----- 164 (366)
T ss_pred eEEEECCCCCcCcEEEeccc--CceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCc-----
Confidence 3457776653 444444332 221 11 139999999888876 568888754 5666655554
Q ss_pred ccCeEEEEEECCeEEEEecCCeE
Q 003205 132 EENVVECVFWGNGVVCVTEANRY 154 (839)
Q Consensus 132 ~~~V~~~~~~~~G~v~~t~~~~~ 154 (839)
.++.+.+||-.++..++-|
T Consensus 165 ----Hev~lm~DGrtlvvanGGI 183 (366)
T COG3490 165 ----HEVTLMADGRTLVVANGGI 183 (366)
T ss_pred ----ceeEEecCCcEEEEeCCce
Confidence 5677788998888877743
No 414
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=57.52 E-value=1.9e+02 Score=37.15 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=21.5
Q ss_pred EEEeecCCCeEEEEEeCCe----EEEEeCCCCc
Q 003205 91 IGMSWSEDQTLICVVQDGT----VYRYNIHAEL 119 (839)
Q Consensus 91 ~~~~fs~de~Lv~v~~dGt----v~l~~~~G~~ 119 (839)
.+++++++|.|.++-+||. ||....+|++
T Consensus 596 r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i 628 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESDGRRINRVRKLSTDGTI 628 (1899)
T ss_pred hceeecCCceEEEEeccchhhhheEEeccCceE
Confidence 6788999999988877764 5555666755
No 415
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=57.51 E-value=16 Score=40.64 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=52.0
Q ss_pred cCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCC
Q 003205 41 APFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIH 116 (839)
Q Consensus 41 sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~ 116 (839)
||+|+.+.+..+..+.... +..+.+.||+..-..+..+.-.. +.+....|||+|+.++.-.++-+.+++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~---s~~~~y~i~d~~~~~~~~l~~~~--~~~~~~~~sP~g~~~~~v~~~nly~~~~~ 71 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRH---SFKGDYYIYDIETGEITPLTPPP--PKLQDAKWSPDGKYIAFVRDNNLYLRDLA 71 (353)
T ss_dssp -TTSSEEEEEEEEEEESSS---EEEEEEEEEETTTTEEEESS-EE--TTBSEEEE-SSSTEEEEEETTEEEEESST
T ss_pred CCCCCeEEEEECcEEeeee---ccceeEEEEecCCCceEECcCCc--cccccceeecCCCeeEEEecCceEEEECC
Confidence 7999999998775544433 34678999998777666665544 78999999999997766677889888754
No 416
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=55.25 E-value=3.6e+02 Score=30.64 Aligned_cols=145 Identities=11% Similarity=0.110 Sum_probs=74.7
Q ss_pred CCeEEEeecCCCeEEEEEeCCeEEEEeCCCC-c-cccCCCCCccccccCeEEEEEEC-CeEEEEecCCeEEEEecCCCce
Q 003205 88 GRLIGMSWSEDQTLICVVQDGTVYRYNIHAE-L-IEPNASMGKECFEENVVECVFWG-NGVVCVTEANRYFCMADFATMK 164 (839)
Q Consensus 88 ~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~-~-~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~~~~~~v~~~~~~~ 164 (839)
+....+.-++|+.++.+...|.+.+=.-.|. + .....+. ...+..+.+.+ .++++++..+.++.-.+- ..
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~-----~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~--G~ 311 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRAS-----ARRIQNMGWRADGGLWLLTRGGGLYVSKGT--GL 311 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCC-----ccceeeeeEcCCCCEEEEeCCceEEEecCC--CC
Confidence 3445556667777777777776443222332 2 3333333 34466666655 555555566665543321 11
Q ss_pred EE---EcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc--c-----ccCCCceEEEECCCCcEEEEe
Q 003205 165 VC---ELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--K-----VDDTLSQKMAVSPNGNFVACF 234 (839)
Q Consensus 165 ~~---~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~--~-----~~~~~i~~ia~Spng~~iA~~ 234 (839)
.. .+...+...... .+....|. +....++++.+|.++.....|.. . .-..++.+|.|.++++-.+++
T Consensus 312 ~~~~~~f~~~~~~~~~~--~l~~v~~~-~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G 388 (398)
T PLN00033 312 TEEDFDFEEADIKSRGF--GILDVGYR-SKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG 388 (398)
T ss_pred cccccceeecccCCCCc--ceEEEEEc-CCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe
Confidence 11 122111111111 11222233 33446677777777666555554 1 124568899998888777775
Q ss_pred ecCCeEEEE
Q 003205 235 THDGRLVVN 243 (839)
Q Consensus 235 ~~~g~i~i~ 243 (839)
.+|.|.-+
T Consensus 389 -~~G~il~~ 396 (398)
T PLN00033 389 -NDGVLLRY 396 (398)
T ss_pred -CCcEEEEe
Confidence 57876544
No 417
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=54.67 E-value=29 Score=25.99 Aligned_cols=29 Identities=28% Similarity=0.462 Sum_probs=23.4
Q ss_pred CCceEEEECCC-C--cEEEEeecCCeEEEEec
Q 003205 217 TLSQKMAVSPN-G--NFVACFTHDGRLVVNNT 245 (839)
Q Consensus 217 ~~i~~ia~Spn-g--~~iA~~~~~g~i~i~ss 245 (839)
|.|..|.|||+ | +++|..-..|.+.|++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~ 32 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDT 32 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEc
Confidence 45788999984 4 58998888899999864
No 418
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=54.15 E-value=1.2e+02 Score=37.93 Aligned_cols=138 Identities=11% Similarity=0.096 Sum_probs=73.5
Q ss_pred CceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EE-EEEeCCe-EEEE-------eCCCCccccCCCCCccccccC
Q 003205 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LI-CVVQDGT-VYRY-------NIHAELIEPNASMGKECFEEN 134 (839)
Q Consensus 65 ~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv-~v~~dGt-v~l~-------~~~G~~~~~~~g~~~~~~~~~ 134 (839)
+-.|-+==.+|+++-+|- .+ ...+.+.+|-++.. +. ++-.||. |.++ -..|...+--.|. .-.
T Consensus 469 dsyivvsF~n~TlVLsIg-es-veEvtdsgFls~~~Tl~~~l~Gd~slVQi~~d~iRhi~~~~r~~ew~~P~-----~~~ 541 (1205)
T KOG1898|consen 469 DSYIVVSFVNGTLVLSIG-ES-VEEVTDSGFLSTTPTLACSLMGDDSLVQIHPDGIRHIRPTKRINEWKTPE-----RVR 541 (1205)
T ss_pred ceEEEEEeeccEEEEEcc-hh-HHHhhhcccccCCceEEEEEecCCcEEEEchhhhhhcccccccccccCCC-----ceE
Confidence 333333334666777665 22 25566677766543 42 3333333 3333 1223222222222 445
Q ss_pred eEEEEEECCeEEEEecCCeEEEEecCCCceEEEcCC-CCCCCCCceEEEeCCC-CCCCCcEEEEEEeCCeEEEEecC
Q 003205 135 VVECVFWGNGVVCVTEANRYFCMADFATMKVCELAR-PEVEELPHCVAVIEPK-YTMTGSVEVLIGTDAGILMLDED 209 (839)
Q Consensus 135 V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~~~~l~~-~~~~~~~~~w~vi~~~-~S~~~~~~v~~s~d~tv~l~~~~ 209 (839)
|..+.+..+-+|+.++++.+++...-.+.+...+.+ +-+...+.|.++-+.. -.......++++.|+++..++.+
T Consensus 542 Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~ 618 (1205)
T KOG1898|consen 542 IVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLD 618 (1205)
T ss_pred EEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEec
Confidence 777788889999999999987665433333333422 1233457777653211 11122367888889988887665
No 419
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=53.33 E-value=63 Score=33.16 Aligned_cols=73 Identities=11% Similarity=0.194 Sum_probs=50.6
Q ss_pred EEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCC-cEEEEEEeCCeEEEEecC--Ccc----cccCCCceEEEECC
Q 003205 154 YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTG-SVEVLIGTDAGILMLDED--GVQ----KVDDTLSQKMAVSP 226 (839)
Q Consensus 154 ~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~-~~~v~~s~d~tv~l~~~~--~~~----~~~~~~i~~ia~Sp 226 (839)
+|.+.+|.+++..... ..|...+. .| +.+.++..+++|-+|+.. ++. ....+.|.+|+.|.
T Consensus 2 v~~~H~F~sQ~v~~~~-----~EP~~~c~-------~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~ 69 (215)
T PF14761_consen 2 VYNCHPFGSQNVVPCE-----QEPTAVCC-------GGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSE 69 (215)
T ss_pred eEEecccCCceeeccc-----cCcceeec-------cCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecc
Confidence 4556666665543322 35665544 45 666666778899999977 333 34568999999999
Q ss_pred CCcEEEEeecCC
Q 003205 227 NGNFVACFTHDG 238 (839)
Q Consensus 227 ng~~iA~~~~~g 238 (839)
.|++|++.-.+.
T Consensus 70 ~GDYlvTlE~k~ 81 (215)
T PF14761_consen 70 AGDYLVTLEEKN 81 (215)
T ss_pred ccceEEEEEeec
Confidence 999999986543
No 420
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=53.22 E-value=5.2e+02 Score=31.79 Aligned_cols=100 Identities=12% Similarity=0.056 Sum_probs=51.1
Q ss_pred HHHcCCcchHHhHHhHc---CCChHHHHHHHHHHHHhCCChhHHHHhhc-----cCCCCCCchHHHHHHHhcCCHHHHHH
Q 003205 701 CIVLGNHRAAMKVKTEF---KVSEKRWYWLKVFALATKRDWDALERFSK-----EKRPPIGYRPFVEACVDADEKGEALK 772 (839)
Q Consensus 701 l~~~~~~k~a~~l~k~f---kvsdkr~~~~kl~ala~~~~w~~L~~f~~-----~KKspIgyepfv~~~~~~~~~~ea~~ 772 (839)
+...|+.+.|..+-++. .-.+...|......+...++|++-....+ ....|..+.-...++...|+.++|..
T Consensus 577 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 656 (899)
T TIGR02917 577 YLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAIT 656 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 33445554444433322 12234566666677777777766443332 12344445555566666677776665
Q ss_pred hhccC----CC-H---HHHHHHHHHcCCHHHHHHHH
Q 003205 773 YIPKL----VD-P---RERAEAYARIGMAKEAADAA 800 (839)
Q Consensus 773 yI~~i----~d-~---~~r~~~~~~~~~~~~A~~~a 800 (839)
++.++ ++ . .....++.+.|.+.+|.+.+
T Consensus 657 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 657 SLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55442 11 1 33455556666666665543
No 421
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=53.09 E-value=1e+02 Score=30.50 Aligned_cols=82 Identities=17% Similarity=0.133 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHhCCChhHHHHhhccCCCCCCchHHHHHHHhcCCHHH-----HHHhhccCC-CHHHHHHHHHHcCCHH
Q 003205 721 EKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGE-----ALKYIPKLV-DPRERAEAYARIGMAK 794 (839)
Q Consensus 721 dkr~~~~kl~ala~~~~w~~L~~f~~~KKspIgyepfv~~~~~~~~~~e-----a~~yI~~i~-d~~~r~~~~~~~~~~~ 794 (839)
+...+-+-++.|++.+++..|..|...+ .--.=.|++-.++..++... |.--+.++. ..++.++.++.-|++-
T Consensus 28 ~~~L~~lli~lLi~~~~~~~L~qllq~~-Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~~~iievLL~~g~vl 106 (167)
T PF07035_consen 28 QHELYELLIDLLIRNGQFSQLHQLLQYH-VIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAYEEIIEVLLSKGQVL 106 (167)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHhhc-ccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhhhHHHHHHHHHhCCCHH
Confidence 4447778888899999999998888732 22233567777777766432 445566666 5678888888888888
Q ss_pred HHHHHHHhc
Q 003205 795 EAADAASQA 803 (839)
Q Consensus 795 ~A~~~a~~~ 803 (839)
+|+..|.+.
T Consensus 107 ~ALr~ar~~ 115 (167)
T PF07035_consen 107 EALRYARQY 115 (167)
T ss_pred HHHHHHHHc
Confidence 888888774
No 422
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.94 E-value=27 Score=40.09 Aligned_cols=82 Identities=13% Similarity=0.205 Sum_probs=46.9
Q ss_pred CCCCCCEEEEcCCCCeEEEEecCchhhhhhc----------ccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCC-
Q 003205 31 IDLSRNKVACAPFGGPIAVIRDDSKIVQLYA----------ESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSED- 98 (839)
Q Consensus 31 ~~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~----------~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~d- 98 (839)
..|+.+.|.++|.|..+|+++- ..++.+.. ++.+++|-.-+ +-|..+-+ ..+.=.+....|.|+
T Consensus 102 V~feV~~vl~s~~GS~VaL~G~-~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ft---ss~~ltl~Qa~WHP~S 177 (741)
T KOG4460|consen 102 VLFEVYQVLLSPTGSHVALIGI-KGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFT---SSTSLTLKQAAWHPSS 177 (741)
T ss_pred ceEEEEEEEecCCCceEEEecC-CeeEEEEchhhcCccceecCCCceEEEEeecccceeec---cCCceeeeeccccCCc
Confidence 3567789999999999999863 22222210 11222221111 11111111 111124566677774
Q ss_pred ---CeEEEEEeCCeEEEEeCC
Q 003205 99 ---QTLICVVQDGTVYRYNIH 116 (839)
Q Consensus 99 ---e~Lv~v~~dGtv~l~~~~ 116 (839)
-+|++.++|.++|+||+.
T Consensus 178 ~~D~hL~iL~sdnviRiy~lS 198 (741)
T KOG4460|consen 178 ILDPHLVLLTSDNVIRIYSLS 198 (741)
T ss_pred cCCceEEEEecCcEEEEEecC
Confidence 479999999999999875
No 423
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=51.96 E-value=33 Score=24.37 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=15.3
Q ss_pred CCceEEEECCCCcEEEEeecC
Q 003205 217 TLSQKMAVSPNGNFVACFTHD 237 (839)
Q Consensus 217 ~~i~~ia~Spng~~iA~~~~~ 237 (839)
+.-..-++||||+.|+..+..
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEEC
T ss_pred ccccCEEEecCCCEEEEEecC
Confidence 345678899999998887754
No 424
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=51.86 E-value=40 Score=35.01 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=45.0
Q ss_pred CCceEEEEcCCCCceeEEEecCCCCCeEEEeecC---CCeEEEEEeCCeEEEE---eCCCCccccCCCCCccccccCeEE
Q 003205 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSE---DQTLICVVQDGTVYRY---NIHAELIEPNASMGKECFEENVVE 137 (839)
Q Consensus 64 ~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~---de~Lv~v~~dGtv~l~---~~~G~~~~~~~g~~~~~~~~~V~~ 137 (839)
..-+|.|||.+|+++.++...........|.|.- +|.. ..+|.+.+- .-.|+-......- ...|..
T Consensus 126 ~~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~---lp~G~Yt~~V~A~~~g~~~~~~~~~-----~g~V~~ 197 (225)
T PRK06655 126 DNVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNA---LPDGNYTIKASASVGGKQLVAQTLT-----YANVQS 197 (225)
T ss_pred cEEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCc---CCCeeEEEEEEEEeCCceeeeeeeE-----EEEEEE
Confidence 4678999999999999998843224467888853 2322 245544322 2234432111100 345677
Q ss_pred EEEECCeEEEEecC
Q 003205 138 CVFWGNGVVCVTEA 151 (839)
Q Consensus 138 ~~~~~~G~v~~t~~ 151 (839)
+++-.+|..+....
T Consensus 198 V~~~~~~~~l~l~~ 211 (225)
T PRK06655 198 VSLGANGGGLDLNL 211 (225)
T ss_pred EEecCCCcEEEEcc
Confidence 77655565555443
No 425
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=51.24 E-value=4e+02 Score=29.95 Aligned_cols=76 Identities=16% Similarity=0.171 Sum_probs=51.8
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC-CCceeEEEecCCCCCeEEEeecCCCeEEEEE--eCCeE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISETVWKNPGGRLIGMSWSEDQTLICVV--QDGTV 110 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~--~dGtv 110 (839)
.-..++++|+|+.+=+..- .....++-+.+.. ++++.+++--. .+ ..+.++|+|+.+.+. .++++
T Consensus 117 ~P~~~~~~~~~~~vYV~n~---------~~~~~~vsvid~~t~~~~~~~~vG~--~P-~~~a~~p~g~~vyv~~~~~~~v 184 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANA---------GNGNNTVSVIDAATNKVTATIPVGN--TP-TGVAVDPDGNKVYVTNSDDNTV 184 (381)
T ss_pred CCceEEECCCCCEEEEEec---------ccCCceEEEEeCCCCeEEEEEecCC--Cc-ceEEECCCCCeEEEEecCCCeE
Confidence 3446778888877776652 1136888888865 56666654432 23 899999999954444 59999
Q ss_pred EEEeCCCCccc
Q 003205 111 YRYNIHAELIE 121 (839)
Q Consensus 111 ~l~~~~G~~~~ 121 (839)
.+++..+....
T Consensus 185 ~vi~~~~~~v~ 195 (381)
T COG3391 185 SVIDTSGNSVV 195 (381)
T ss_pred EEEeCCCccee
Confidence 99997776543
No 426
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=50.96 E-value=1e+02 Score=35.30 Aligned_cols=158 Identities=11% Similarity=-0.001 Sum_probs=93.7
Q ss_pred CeEEEeecCC--CeEEEEEeCCeEEEEeC---CCC-----ccccCCCCCccccccCeEEEEEECCeEE-EEecC-CeEEE
Q 003205 89 RLIGMSWSED--QTLICVVQDGTVYRYNI---HAE-----LIEPNASMGKECFEENVVECVFWGNGVV-CVTEA-NRYFC 156 (839)
Q Consensus 89 ~I~~~~fs~d--e~Lv~v~~dGtv~l~~~---~G~-----~~~~~~g~~~~~~~~~V~~~~~~~~G~v-~~t~~-~~~~~ 156 (839)
.+.+++-+|- .++++...|..+|+|+. +++ +.+|...|-.+.....|..++++.+|-- +++-+ -.+|.
T Consensus 283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL 362 (559)
T KOG1334|consen 283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYL 362 (559)
T ss_pred eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEE
Confidence 4566677773 35789999999999963 333 3344333333222455677777744444 44433 34565
Q ss_pred Eec-CC-CceEEEcCC----CC--CCCCCceEEEeC-CCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEE
Q 003205 157 MAD-FA-TMKVCELAR----PE--VEELPHCVAVIE-PKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKM 222 (839)
Q Consensus 157 v~~-~~-~~~~~~l~~----~~--~~~~~~~w~vi~-~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~i 222 (839)
.+. .. ++.+..+.. .+ ..+...+-+|-. -.|=|....+|..+.=|.|++|+..+++ .++..-|+.+
T Consensus 363 F~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCL 442 (559)
T KOG1334|consen 363 FNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCL 442 (559)
T ss_pred eccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEecc
Confidence 531 11 111111110 00 001111122211 1245567888888888899999998876 4555678888
Q ss_pred EECCCCcEEEEeecCCeEEEEecC
Q 003205 223 AVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 223 a~Spng~~iA~~~~~g~i~i~ssd 246 (839)
-..|-=-.+|+-+-+.-|+||+.-
T Consensus 443 EpHP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 443 EPHPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred CCCCCCchhhccCCccceeeecCC
Confidence 889988899998888899999873
No 427
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=50.82 E-value=19 Score=38.50 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHHHHhCCChhHHHHhhcc--CCC-----CCCchHHHHHHHhcCCHHHHHHhhcc
Q 003205 720 SEKRWYWLKVFALATKRDWDALERFSKE--KRP-----PIGYRPFVEACVDADEKGEALKYIPK 776 (839)
Q Consensus 720 sdkr~~~~kl~ala~~~~w~~L~~f~~~--KKs-----pIgyepfv~~~~~~~~~~ea~~yI~~ 776 (839)
++.+++...+..+...++|+++..++.+ ... |--|.-......+.|++++|..++.+
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455566666666666677666666543 111 12222233455666666666555443
No 428
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.67 E-value=2.5e+02 Score=35.18 Aligned_cols=103 Identities=18% Similarity=0.107 Sum_probs=52.7
Q ss_pred eEEEECCCCcEEEEeecCCeEEEEecCCCCcccc-ccCC---CCCCCCceeeecCceEEEEecCEEEEEcCCCC-----c
Q 003205 220 QKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVID-ESCE---SALPPEQIAWCGMDSVLLYWNDMLVMVAPQAE-----P 290 (839)
Q Consensus 220 ~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e-~~~~---~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~-----~ 290 (839)
.-.+..-+|..+|++..+-..-++... +..... |-+. .+.+|.-..-|.+-.+++.-++..+++..+|. .
T Consensus 159 ~p~~~~~~~~~~c~~~~~~~~ii~~~~-~~~~~~~~~s~~~~~s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~~ 237 (877)
T KOG2063|consen 159 VPKARAWCGHIVCLGLKKSYYIINNTS-KGVGPNLFPSSMDNESRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRGT 237 (877)
T ss_pred chhhhcccceeEEEeecceeEEEecCC-CccccceeeeccccccCCCeEEEecCCceEEEccCceEEEEecCCcccCCCc
Confidence 334555667777776653332233222 111111 1111 22333322222222444444444445544443 4
Q ss_pred eEeccC------CCeEEeecCCc-eEEEccCcceeeeccc
Q 003205 291 VQYFYD------EPLVLIPECDG-VRILSNSSMEFLQRVP 323 (839)
Q Consensus 291 v~f~~~------~~~~l~~E~DG-vRIit~~~~~~l~~Vp 323 (839)
+.|+-- .++++++..|+ +-|++...+.++|.++
T Consensus 238 l~ws~~P~~v~~~~PYlIa~~~~~veI~s~~~~qlvQSI~ 277 (877)
T KOG2063|consen 238 LVWSEVPLSVVVESPYLIALLDRSVEIRSKLDGQLVQSIT 277 (877)
T ss_pred eEecccchhhcccCceEEEEccccEEEEeccCHHHhhccc
Confidence 555421 45788888887 8899998889999985
No 429
>PRK14574 hmsH outer membrane protein; Provisional
Probab=50.27 E-value=6.2e+02 Score=31.83 Aligned_cols=108 Identities=21% Similarity=0.208 Sum_probs=68.1
Q ss_pred HHHHHHHHHcCCcchHHhHHhHcC--CChHHHHHHHHHHHHhCCChh------HHHHhh-------------c-cCCCCC
Q 003205 695 SDTIRTCIVLGNHRAAMKVKTEFK--VSEKRWYWLKVFALATKRDWD------ALERFS-------------K-EKRPPI 752 (839)
Q Consensus 695 ~~ti~~l~~~~~~k~a~~l~k~fk--vsdkr~~~~kl~ala~~~~w~------~L~~f~-------------~-~KKspI 752 (839)
.+-+..+-..|-...|.++.++.. +++...+|+.....++.=+|. +-++|. + -++.|=
T Consensus 207 ~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~ 286 (822)
T PRK14574 207 KNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPE 286 (822)
T ss_pred HHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCc
Confidence 555666777888889999999998 899999998877777655554 333332 1 112221
Q ss_pred ---Cch----HHHHHHHhcCCHHHHH-Hhhc------cCCCH--HHHHHHHHHcCCHHHHHHHHHh
Q 003205 753 ---GYR----PFVEACVDADEKGEAL-KYIP------KLVDP--RERAEAYARIGMAKEAADAASQ 802 (839)
Q Consensus 753 ---gye----pfv~~~~~~~~~~ea~-~yI~------~i~d~--~~r~~~~~~~~~~~~A~~~a~~ 802 (839)
.|. --+-++.+.|+..++. .|-. .||+. +--.+.|+..+...+|..+..+
T Consensus 287 ~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 287 AQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 121 1233456667777654 3322 33433 6677888888888888877654
No 430
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=49.17 E-value=4.4e+02 Score=29.78 Aligned_cols=101 Identities=17% Similarity=0.123 Sum_probs=51.4
Q ss_pred HHHHHHcCCcchHHhHH-hHcCCChHHHHHHHHHHHHhCCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHH
Q 003205 698 IRTCIVLGNHRAAMKVK-TEFKVSEKRWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEAL 771 (839)
Q Consensus 698 i~~l~~~~~~k~a~~l~-k~fkvsdkr~~~~kl~ala~~~~w~~L~~f~~~-----KKspIgyepfv~~~~~~~~~~ea~ 771 (839)
...++..|+...|.++- +-.+-++ -..-..+.+.+..++.++.-+++.. -.+|..+-.....|+..+...+|.
T Consensus 270 A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~ 348 (398)
T PRK10747 270 AEHLIECDDHDTAQQIILDGLKRQY-DERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEAS 348 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455666666655543 2233221 1122233444444565554444421 245555666677777777777777
Q ss_pred HhhccC----CCHH---HHHHHHHHcCCHHHHHHH
Q 003205 772 KYIPKL----VDPR---ERAEAYARIGMAKEAADA 799 (839)
Q Consensus 772 ~yI~~i----~d~~---~r~~~~~~~~~~~~A~~~ 799 (839)
.|..+. |+.+ .-..++.+.|...+|.+.
T Consensus 349 ~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~ 383 (398)
T PRK10747 349 LAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAM 383 (398)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777664 2221 233445555555555433
No 431
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=48.02 E-value=81 Score=34.51 Aligned_cols=51 Identities=27% Similarity=0.294 Sum_probs=38.1
Q ss_pred HHHHHHhCCChhHHHHhhccCCCCCCchHHHHHHH--hcCCHHHHHHhhccCC
Q 003205 728 KVFALATKRDWDALERFSKEKRPPIGYRPFVEACV--DADEKGEALKYIPKLV 778 (839)
Q Consensus 728 kl~ala~~~~w~~L~~f~~~KKspIgyepfv~~~~--~~~~~~ea~~yI~~i~ 778 (839)
...+.-..++||.|+.+...-.....-..|..++. ..+..+++.++|.++.
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r 56 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKAR 56 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 45677789999999999876554444555666665 5678888999998864
No 432
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=47.75 E-value=1.7e+02 Score=32.09 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=32.9
Q ss_pred CceEEEEcCCCCceeEEEec-------------CCCCCeEEEeecCCCe-EEEEEeCC
Q 003205 65 LRKLRIFNSAGVLISETVWK-------------NPGGRLIGMSWSEDQT-LICVVQDG 108 (839)
Q Consensus 65 ~~~I~iy~~~G~ll~ti~~~-------------~~~~~I~~~~fs~de~-Lv~v~~dG 108 (839)
.+.|.-|+.+|+.+..+... ..+..+-+|+++|||+ |+++.+..
T Consensus 111 ~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~ 168 (326)
T PF13449_consen 111 PPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESP 168 (326)
T ss_pred CCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECcc
Confidence 49999999999998887321 1134688999999998 76665544
No 433
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=47.38 E-value=4.1e+02 Score=29.00 Aligned_cols=191 Identities=14% Similarity=0.085 Sum_probs=100.5
Q ss_pred CCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeC-CCCc-ccc-CCCCCccccccCeEEEEE
Q 003205 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNI-HAEL-IEP-NASMGKECFEENVVECVF 140 (839)
Q Consensus 64 ~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~-~G~~-~~~-~~g~~~~~~~~~V~~~~~ 140 (839)
..+.|+-|+........+... +.+.+......+.++++.+.| +++++. .|.. ..+ ....... ...-.++++
T Consensus 45 ~~~~i~r~~~~~g~~~~~~~p---~~~~~~~~~d~~g~Lv~~~~g-~~~~~~~~~~~~t~~~~~~~~~~--~~r~ND~~v 118 (307)
T COG3386 45 LGGRIHRLDPETGKKRVFPSP---GGFSSGALIDAGGRLIACEHG-VRLLDPDTGGKITLLAEPEDGLP--LNRPNDGVV 118 (307)
T ss_pred CCCeEEEecCCcCceEEEECC---CCcccceeecCCCeEEEEccc-cEEEeccCCceeEEeccccCCCC--cCCCCceeE
Confidence 468888888875555555432 555666666677777778888 444653 3444 221 1111111 344557777
Q ss_pred ECCeEEEEecCC-------------eEEEEecCCCceEEEcCCCCCCCCCceEEE-eCCCCCCCCcEEEEEEe-CCeEEE
Q 003205 141 WGNGVVCVTEAN-------------RYFCMADFATMKVCELARPEVEELPHCVAV-IEPKYTMTGSVEVLIGT-DAGILM 205 (839)
Q Consensus 141 ~~~G~v~~t~~~-------------~~~~v~~~~~~~~~~l~~~~~~~~~~~w~v-i~~~~S~~~~~~v~~s~-d~tv~l 205 (839)
-++|-..++... .+|.++- .+...+.+. .+..+ +...|||||++...+.. .+.|+.
T Consensus 119 ~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~--------~~~~~~NGla~SpDg~tly~aDT~~~~i~r 189 (307)
T COG3386 119 DPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD--------DDLTIPNGLAFSPDGKTLYVADTPANRIHR 189 (307)
T ss_pred cCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec--------CcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence 787776666433 2344431 111111111 11111 33458889987777766 577877
Q ss_pred EecCCcc------------cccCCCceEEEECCCCcEEEEeecCC-eEEEEecCCCCccccccCCCCCCCCceeeecCc
Q 003205 206 LDEDGVQ------------KVDDTLSQKMAVSPNGNFVACFTHDG-RLVVNNTNFSSPVIDESCESALPPEQIAWCGMD 271 (839)
Q Consensus 206 ~~~~~~~------------~~~~~~i~~ia~Spng~~iA~~~~~g-~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d 271 (839)
++.+... ..+.+.--.+++--+|.+-+.....| .|.+++.| ++.+.++..-. ..|...++=|.+
T Consensus 190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~-~~~t~~~FgG~~ 266 (307)
T COG3386 190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV-KRPTNPAFGGPD 266 (307)
T ss_pred EecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC-CCCccceEeCCC
Confidence 7666211 11223334455555555543333333 56666666 66666554431 345566655654
No 434
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=45.41 E-value=4.4e+02 Score=28.77 Aligned_cols=113 Identities=17% Similarity=0.162 Sum_probs=55.5
Q ss_pred CeEEEEecCCcc-c---ccCCCceEEEECCCCcEEEEeecC--CeEEEEecCC--C---CccccccC-CCCCCCCceeee
Q 003205 201 AGILMLDEDGVQ-K---VDDTLSQKMAVSPNGNFVACFTHD--GRLVVNNTNF--S---SPVIDESC-ESALPPEQIAWC 268 (839)
Q Consensus 201 ~tv~l~~~~~~~-~---~~~~~i~~ia~Spng~~iA~~~~~--g~i~i~ssd~--~---~~l~e~~~-~~~~~p~~~~Wc 268 (839)
|.||.++..+.. . .+..-=+.|+|||||+ ...++++ +.|+-+.-|- . ..-..+.. .....|..|+=-
T Consensus 143 G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~-tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD 221 (307)
T COG3386 143 GSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGK-TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD 221 (307)
T ss_pred ceEEEEcCCCCEEEeecCcEEecCceEECCCCC-EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEe
Confidence 468888865543 2 1122346899999997 4455555 4566665441 0 11001111 234566655533
Q ss_pred cCceEE--EEecC-EEEEEcCCCC---ceEec-cCCCeEEeecCCc--eEEEccC
Q 003205 269 GMDSVL--LYWND-MLVMVAPQAE---PVQYF-YDEPLVLIPECDG--VRILSNS 314 (839)
Q Consensus 269 G~d~vv--~~~~~-~l~lig~~~~---~v~f~-~~~~~~l~~E~DG--vRIit~~ 314 (839)
.+.++- ..|+. .|..+.|+|. .+..+ .....+.+...|+ +.|-+..
T Consensus 222 adG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 222 ADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred CCCCEEEecccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 333332 12332 6667777765 34444 1223344555444 4444443
No 435
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=45.25 E-value=1.5e+02 Score=25.96 Aligned_cols=76 Identities=12% Similarity=0.086 Sum_probs=47.2
Q ss_pred EEEEcCCCCeEEEEecCchhhh------hhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeE
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQ------LYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTV 110 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~------~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv 110 (839)
-++++++||.|=...--++.-. +-.....+.+--|+++.+....+.-.= .-..+++.|+||..+++.+-+..
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L--~fpNGVals~d~~~vlv~Et~~~ 79 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGL--YFPNGVALSPDESFVLVAETGRY 79 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEE--SSEEEEEE-TTSSEEEEEEGGGT
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCC--CccCeEEEcCCCCEEEEEeccCc
Confidence 4678888777666532122110 111245788999999998887766443 56789999999999999998887
Q ss_pred EEEe
Q 003205 111 YRYN 114 (839)
Q Consensus 111 ~l~~ 114 (839)
|+..
T Consensus 80 Ri~r 83 (89)
T PF03088_consen 80 RILR 83 (89)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 7763
No 436
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=45.05 E-value=1e+02 Score=33.19 Aligned_cols=149 Identities=10% Similarity=0.144 Sum_probs=77.1
Q ss_pred CCeEEEeecCCCe-EEEEEeCCeEEEEe---CCC---CccccCCCCCccc-------cccCeEEEEEEC-Ce--EEEEec
Q 003205 88 GRLIGMSWSEDQT-LICVVQDGTVYRYN---IHA---ELIEPNASMGKEC-------FEENVVECVFWG-NG--VVCVTE 150 (839)
Q Consensus 88 ~~I~~~~fs~de~-Lv~v~~dGtv~l~~---~~G---~~~~~~~g~~~~~-------~~~~V~~~~~~~-~G--~v~~t~ 150 (839)
+.|.++.|...|. |+++...|.|.+|. ..| ++.+-+.+|+.|. .++.|..++..+ +| -.+++.
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 6788999987765 56777779999993 222 2344455665542 366777777655 22 223333
Q ss_pred CCeEEEEecCCCceEEEcCCCCCC--------CCC-ceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcccccCCCceE
Q 003205 151 ANRYFCMADFATMKVCELARPEVE--------ELP-HCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQKVDDTLSQK 221 (839)
Q Consensus 151 ~~~~~~v~~~~~~~~~~l~~~~~~--------~~~-~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~~~~~~~i~~ 221 (839)
+.+-..+|.+.+..+...++.++. ++. +.-.+.-|..| ..-+++++....||. ..|.-.+.+
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls--~hd~iiaa~p~rvya-------NaH~yhiNS 177 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLS--EHDEIIAAKPCRVYA-------NAHPYHINS 177 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhccccc--ccceEEEeccceecc-------ccceeEeee
Confidence 333333333332333333322221 000 00011122221 123333433333321 345566889
Q ss_pred EEECCCCcEEEEeecCCeEEEEecC
Q 003205 222 MAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 222 ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
|+|..|.+++.+. ++-.|-+|+.+
T Consensus 178 iS~NsD~et~lSa-DdLrINLWnl~ 201 (460)
T COG5170 178 ISFNSDKETLLSA-DDLRINLWNLE 201 (460)
T ss_pred eeecCchheeeec-cceeeeecccc
Confidence 9999998776663 56778888754
No 437
>PHA02248 hypothetical protein
Probab=44.93 E-value=28 Score=32.95 Aligned_cols=62 Identities=16% Similarity=0.304 Sum_probs=44.7
Q ss_pred EEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeec--------------CCCeEEEE
Q 003205 39 ACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWS--------------EDQTLICV 104 (839)
Q Consensus 39 a~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs--------------~de~Lv~v 104 (839)
-.|-+|..||.... ..+.+-+|.-+|.....+..-. +.++-...|| |.|.|++-
T Consensus 49 L~S~~G~~~A~Y~K-----------D~NAVGF~~~~G~T~k~L~H~~-~~~LE~~~FTIEE~~~i~Li~d~LP~GDiLI~ 116 (204)
T PHA02248 49 LVSDNGKFIAKYNK-----------DMNAVGFYEESGDTVKHLTHTT-PERLEGTVFTIEEETEIDLINDTLPQGDILIK 116 (204)
T ss_pred hhhcCCceehhhhc-----------ccceeeeEecCCceecccccCC-hHHccccEEEeeeeeEeehhcCCCCCCcEEEE
Confidence 35788999999863 4688999999999988887444 5777777787 34455555
Q ss_pred EeCCeEEE
Q 003205 105 VQDGTVYR 112 (839)
Q Consensus 105 ~~dGtv~l 112 (839)
.+||.|++
T Consensus 117 ~~DG~i~~ 124 (204)
T PHA02248 117 FSDGSIYL 124 (204)
T ss_pred eeCCeEec
Confidence 66666553
No 438
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=44.42 E-value=4.9e+02 Score=32.63 Aligned_cols=147 Identities=8% Similarity=0.123 Sum_probs=74.6
Q ss_pred eecCCCe-EEEEEeCCeEEEEeCCCCccc-cCCCCC------ccccccCeEEEEEE--CCeEEEEecCCeEEEEecCCCc
Q 003205 94 SWSEDQT-LICVVQDGTVYRYNIHAELIE-PNASMG------KECFEENVVECVFW--GNGVVCVTEANRYFCMADFATM 163 (839)
Q Consensus 94 ~fs~de~-Lv~v~~dGtv~l~~~~G~~~~-~~~g~~------~~~~~~~V~~~~~~--~~G~v~~t~~~~~~~v~~~~~~ 163 (839)
.+.++|. +++++.+|-++..+.. ++.. ..-+.. .+ .+.+..+... .+-++++|..|++|.+...+=|
T Consensus 491 dli~~e~~~vllS~~GyIKri~~~-~~~~~~~~~~g~s~~klKe--~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP 567 (800)
T TIGR01063 491 DLIARENVVVTLSHNGYVKRVPVS-AYRLQKRGGKGVSGADMKD--DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIP 567 (800)
T ss_pred hccCcceEEEEEcCCCEEEecchh-hhhhhcccCcCccccccCC--CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCc
Confidence 4456666 6899999999977543 1110 000000 01 2334444333 3668899999999887543222
Q ss_pred eEEE------cCC-CCCCCCCceEEEeC-CCCCCCCcEEEEEEeCCeEEEEecCCcc---c--------ccCCCceEEEE
Q 003205 164 KVCE------LAR-PEVEELPHCVAVIE-PKYTMTGSVEVLIGTDAGILMLDEDGVQ---K--------VDDTLSQKMAV 224 (839)
Q Consensus 164 ~~~~------l~~-~~~~~~~~~w~vi~-~~~S~~~~~~v~~s~d~tv~l~~~~~~~---~--------~~~~~i~~ia~ 224 (839)
...+ +.. ..+......-.+++ ..|+ ++..+++++.+|-++..+.+.-. . .....+..+..
T Consensus 568 ~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~-~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~~ 646 (800)
T TIGR01063 568 EASRTAKGKPIVNLLPLQPDERITAILSVKEFD-DGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVRL 646 (800)
T ss_pred CCCcCCCCcCHHHhccCCCCCeEEEEEEeccCC-CCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEEE
Confidence 2110 100 01111111112222 1222 45678888888888877655321 0 11233444444
Q ss_pred CCCCcEEEEeecCCeEEEEe
Q 003205 225 SPNGNFVACFTHDGRLVVNN 244 (839)
Q Consensus 225 Spng~~iA~~~~~g~i~i~s 244 (839)
..+...+.++|.+|.+....
T Consensus 647 ~~~~d~lll~Ts~Gr~~r~~ 666 (800)
T TIGR01063 647 TSGDDEVMLGSKNGKAVRFP 666 (800)
T ss_pred eCCCCEEEEEECCCcEEEEE
Confidence 44456788888888765554
No 439
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=44.19 E-value=4.6e+02 Score=32.43 Aligned_cols=118 Identities=14% Similarity=0.121 Sum_probs=62.0
Q ss_pred CCcEEEEEEeCCeEEEEecCCcc--cccCCCceE-EEECCCCc-----------EEEEeecCCeEEEEecCCCCcccccc
Q 003205 190 TGSVEVLIGTDAGILMLDEDGVQ--KVDDTLSQK-MAVSPNGN-----------FVACFTHDGRLVVNNTNFSSPVIDES 255 (839)
Q Consensus 190 ~~~~~v~~s~d~tv~l~~~~~~~--~~~~~~i~~-ia~Spng~-----------~iA~~~~~g~i~i~ssd~~~~l~e~~ 255 (839)
+.+.+++++.+|.+|.+...... +...+|+.. +.+.++-+ .+.+.|..|..+..+ +.+|.
T Consensus 535 t~d~LllfTs~Gr~yrf~v~eIP~GR~aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~------lse~~ 608 (735)
T TIGR01062 535 SNQKVVFIDSTGRSYALDPDNLPSARGQGEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCN------FNDLI 608 (735)
T ss_pred CCCEEEEEECCCeEEEEEhHhcCcCccCCceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEE------hHhcc
Confidence 55678888888888888665432 334444444 33444333 344444444444333 22333
Q ss_pred CCCCCCCCceeeecCceEEE---EecC--EEEEEcCCCCceEeccCCCeEEeecCCceEEEccC
Q 003205 256 CESALPPEQIAWCGMDSVLL---YWND--MLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNS 314 (839)
Q Consensus 256 ~~~~~~p~~~~WcG~d~vv~---~~~~--~l~lig~~~~~v~f~~~~~~~l~~E~DGvRIit~~ 314 (839)
......-.-+.--.+|.++. .-++ .+.+++.+|..+.|.-+....+.. --|++++...
T Consensus 609 ~~~RaGKgvi~Lk~~d~lv~v~~v~~~dd~V~liT~~GrlLrf~v~EIp~~gR-gkGVkli~L~ 671 (735)
T TIGR01062 609 ARNKAGKALINLPENASVIAPLPVNGDSDMIAAITEAGRMLVFPIDDLPELSK-GKGNKLIRIP 671 (735)
T ss_pred ccCcCCeEEEEeCCCCEEEEEEEEcCCCCEEEEEeCCCcEEEEEHHHCCccCC-CCCeEEEEcC
Confidence 22111111111112333331 1222 578888888888998766555544 5688888773
No 440
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=43.36 E-value=2.1e+02 Score=30.93 Aligned_cols=159 Identities=20% Similarity=0.300 Sum_probs=83.7
Q ss_pred ecCC--ceEEEccCcceeeeccchhhHhhhccCCCChhhhHHHHHHHHhccChhh--H--------------HHHHHhhh
Q 003205 303 PECD--GVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKA--D--------------ENLRLIRA 364 (839)
Q Consensus 303 ~E~D--GvRIit~~~~~~l~~Vp~~~~~vf~igS~~pga~L~~A~~~~~~~~~~a--~--------------e~lr~i~~ 364 (839)
..+| |+|-+-.++..=+..+.......+ -.+.+|+.+.+||.+.|--..++. + |.+..+..
T Consensus 20 ~~MD~~gL~~fv~~~~k~~~~lr~Ev~~AL-~~A~DPAkLVLdai~~f~~~~~~~~~~~~~~~~r~~cilLLE~L~~~~~ 98 (290)
T PF07899_consen 20 EKMDGKGLRKFVSENRKELASLREEVPAAL-RCAPDPAKLVLDAIEGFYPPGSKNKKDSKLVDVRRACILLLEQLMRISP 98 (290)
T ss_pred HHCCHHHHHHHHHHhhhhHHHHHHHHHHHH-HcCCChHHHHHHHHHcccCCccccccCcchhhHHHHHHHHHHHHhhcCC
Confidence 3445 444444332332223333333334 367899999999999885544321 1 11111110
Q ss_pred -----------hHHHHHHHHHHHccccCCHHHHHHHHHHhchhcccccccChhHHHHHhhhhhhhhccCCCCCcccccHH
Q 003205 365 -----------SLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQ 433 (839)
Q Consensus 365 -----------~L~~AV~~CI~AA~~e~d~~~Qk~LL~AAsfGk~f~~~~~~~~fv~~c~~LRvLn~lr~~~igi~lT~~ 433 (839)
.+...=..=|..+..+...+.+-.|+=-|+||- -+.||.++..+.. +... -|. . +.+
T Consensus 99 ~is~~vke~A~~lA~~WK~~l~~~~~~~~lea~gFL~lla~fgi--~s~Fd~del~~Lv---~~va-~~~--~----a~~ 166 (290)
T PF07899_consen 99 EISPEVKEEAKKLAEEWKSKLDGVNNENSLEALGFLQLLAAFGI--VSEFDEDELLKLV---VSVA-RRK--Q----APE 166 (290)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHcCC--ccccCHHHHHHHH---HHhc-chH--h----hHH
Confidence 112222222223334455666667777777876 3356665432221 1111 111 0 112
Q ss_pred HHHhCC----hHHHHHHHHHcCChHHHHHHHHHhCCC----hhhHHHHh
Q 003205 434 QYKSLT----ASVLIGRLINANCHLLALRISEYLGMN----QEVVIMHW 474 (839)
Q Consensus 434 Q~~~l~----~~~li~rL~~r~~~~lA~~I~~~l~~~----~~~I~~~W 474 (839)
=+..|+ .+.+|+.|+++|+|..|++.+-.+|+- |-.+|..+
T Consensus 167 L~~sLgl~~k~~d~V~~LI~~g~~ieAv~fi~~f~L~dkfpPv~lLk~y 215 (290)
T PF07899_consen 167 LCRSLGLSDKMPDIVEKLIKKGKQIEAVRFIYAFGLVDKFPPVPLLKSY 215 (290)
T ss_pred HHHHcCchhhhHHHHHHHHHCCCccchHHHHHHHcCCCCCCCHHHHHHH
Confidence 233333 478999999999999999999999875 44455443
No 441
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=42.98 E-value=6.3e+02 Score=29.84 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=20.3
Q ss_pred HHHHHHhCcHHHHHHHHhc-CCCCCCc-------hhhhhccCchHHH
Q 003205 510 AAHADKSGRRKLAAMLVEH-EPRSSKQ-------VPLLLSIGEEDTA 548 (839)
Q Consensus 510 A~~A~~~gR~~LA~~Ll~~-E~~~~~q-------V~lLl~~~~~~~A 548 (839)
+..-.+.|..+-|+..|+. +...-++ ..+|+++|+.+.|
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA 57 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEA 57 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 3444556777777766543 2222222 2256666666655
No 442
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=42.30 E-value=1e+02 Score=32.74 Aligned_cols=89 Identities=24% Similarity=0.269 Sum_probs=48.8
Q ss_pred CCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEE----eCCCCccccCCCCCccccccCeEEEE
Q 003205 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRY----NIHAELIEPNASMGKECFEENVVECV 139 (839)
Q Consensus 64 ~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~----~~~G~~~~~~~g~~~~~~~~~V~~~~ 139 (839)
..-+|.|+|.+|+.+.++.......-...|.|.....--....+|.|.+- +-.|+....... ...|..+.
T Consensus 141 ~~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A~~~~G~~~~~~~~------~~~V~sV~ 214 (259)
T PRK12812 141 DEGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVYNNKNGEKITANYG------TYPVEAVK 214 (259)
T ss_pred ceEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEEEcCCCcEEeeeee------eEEEEEEE
Confidence 46889999999999999987332234578888652211122245544322 345665443222 12466666
Q ss_pred EECCeEEEEecCCeEEEEec
Q 003205 140 FWGNGVVCVTEANRYFCMAD 159 (839)
Q Consensus 140 ~~~~G~v~~t~~~~~~~v~~ 159 (839)
+- +|-.++...+..+.+.+
T Consensus 215 ~~-~g~~~L~l~g~~v~l~~ 233 (259)
T PRK12812 215 FV-DGVAYAKMAGEYVPMDK 233 (259)
T ss_pred ec-CCeEEEEECCeEEeHHH
Confidence 64 44444444443333333
No 443
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=42.21 E-value=3.7e+02 Score=26.92 Aligned_cols=18 Identities=11% Similarity=0.353 Sum_probs=7.3
Q ss_pred CCCcEEEEeecCCeEEEE
Q 003205 226 PNGNFVACFTHDGRLVVN 243 (839)
Q Consensus 226 png~~iA~~~~~g~i~i~ 243 (839)
|||..+-.+.+.++.++-
T Consensus 44 pDg~v~Y~ya~~~T~~tt 61 (179)
T PF07202_consen 44 PDGRVIYYYADAQTTHTT 61 (179)
T ss_pred cCCcEEEEEeCCCEEEEE
Confidence 444444444443443333
No 444
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=42.20 E-value=7.3e+02 Score=32.75 Aligned_cols=205 Identities=11% Similarity=0.076 Sum_probs=112.1
Q ss_pred ChhHHHHHHhcChhHHHHHHHHHHhcCHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHh
Q 003205 573 PALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEKAHS 652 (839)
Q Consensus 573 ~~~~f~~~l~~~p~a~~~~~~y~~~~~~~~L~~~~~~~~~~~e~a~~~l~~~~~~~~~~~~~~~~~~~~~k~~~L~~a~~ 652 (839)
+.++|-++++.+|...-+.+.|.. |+.+... .|.|.-...+|+.+-+.- +-.+.|+-+..
T Consensus 1443 saeDferlvrssPNSSi~WI~YMa---------f~LelsE-iekAR~iaerAL~tIN~R----------EeeEKLNiWiA 1502 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMA---------FHLELSE-IEKARKIAERALKTINFR----------EEEEKLNIWIA 1502 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHH---------HHhhhhh-hHHHHHHHHHHhhhCCcc----------hhHHHHHHHHH
Confidence 567999999999999999999975 2222211 355666666777655443 22345554444
Q ss_pred hhhhccccchHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHHHHHHHHc-CCcchH----HhHHhHcCCChHHHHHH
Q 003205 653 LFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVL-GNHRAA----MKVKTEFKVSEKRWYWL 727 (839)
Q Consensus 653 ~~~~~~~~~f~~~~~~~~~~Ll~~Q~~Le~~~~~~~f~~~Sl~~ti~~l~~~-~~~k~a----~~l~k~fkvsdkr~~~~ 727 (839)
+++-... +. .+. ..|..+|+.-+- -.-++|+.++...+.. +....| ..+.|+|+ -.+..|..
T Consensus 1503 ~lNlEn~---yG----~ee---sl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~ 1569 (1710)
T KOG1070|consen 1503 YLNLENA---YG----TEE---SLKKVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIM 1569 (1710)
T ss_pred HHhHHHh---hC----cHH---HHHHHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHH
Confidence 3321000 00 000 111112221110 1124566666666653 233444 34588999 77888999
Q ss_pred HHHHHHhCCChhHHHHhhcc------CCCCCCch-HHHHHHHhcCCHHHHH-HhhccCCCHHHHHHHHHHcCCHHHHHHH
Q 003205 728 KVFALATKRDWDALERFSKE------KRPPIGYR-PFVEACVDADEKGEAL-KYIPKLVDPRERAEAYARIGMAKEAADA 799 (839)
Q Consensus 728 kl~ala~~~~w~~L~~f~~~------KKspIgye-pfv~~~~~~~~~~ea~-~yI~~i~d~~~r~~~~~~~~~~~~A~~~ 799 (839)
....|....+=+......+. |+-.|++- -|+..-.++|.++.+. -|-..+....+|.++ |.-=|+.
T Consensus 1570 y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDl------W~VYid~ 1643 (1710)
T KOG1070|consen 1570 YADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDL------WSVYIDM 1643 (1710)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhH------HHHHHHH
Confidence 99999988775555544431 34455554 4788888888877653 444444433444433 3344445
Q ss_pred HHhcCCHHHHHHHHHHh
Q 003205 800 ASQAKDGELLGRLKLTF 816 (839)
Q Consensus 800 a~~~kd~~~L~~i~~~~ 816 (839)
-.+++|.+-+..+..|+
T Consensus 1644 eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1644 EIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred HHccCCHHHHHHHHHHH
Confidence 55555555555554443
No 445
>KOG3717 consensus Carnitine O-acyltransferase CRAT [Lipid transport and metabolism]
Probab=41.82 E-value=1.1e+02 Score=35.51 Aligned_cols=122 Identities=18% Similarity=0.267 Sum_probs=82.3
Q ss_pred HHHHHhchhccccc--ccChhHHHHHhhhhhhhhccCCCCCcccccHHHHHhCChHHHHHHHHHcCChHHHHHHHHHhCC
Q 003205 388 TLLRAASYGQAFCS--NFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGM 465 (839)
Q Consensus 388 ~LL~AAsfGk~f~~--~~~~~~fv~~c~~LRvLn~lr~~~igi~lT~~Q~~~l~~~~li~rL~~r~~~~lA~~I~~~l~~ 465 (839)
.-++-=.|||.|+. ...||.|+.++=.|-.-.-.++ .+-||+ . ..+=.|.+=
T Consensus 394 ~V~~f~~yGK~FiK~~k~SPDaFIQmalQLA~yk~h~~----l~aTYE---S-------------------AslR~F~~G 447 (612)
T KOG3717|consen 394 TVLKFNHYGKDFIKSQKLSPDAFIQMALQLAFYKLHGR----LVATYE---S-------------------ASLRRFHEG 447 (612)
T ss_pred EEEEeccccccchhhhCcCchHHHHHHHHHHHHHHhcc----cCcchh---h-------------------hhhhhhcCC
Confidence 34555689999987 5679999999976665554443 133433 2 222233333
Q ss_pred Ch------hhHHHHhHhhhhhhcCCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHHHHhcCCCCCCchhhh
Q 003205 466 NQ------EVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLL 539 (839)
Q Consensus 466 ~~------~~I~~~WA~~kI~~~~~~~D~~l~~~I~~kl~~~~~is~~~IA~~A~~~gR~~LA~~Ll~~E~~~~~qV~lL 539 (839)
.+ +.=...|+.+.- ++..+.++.+++++.=... +.-|+.-|....-.-|.-||.+++..|.+ +.+|-|
T Consensus 448 RtdtIRS~s~esL~fv~am~--~~~v~~~ek~~llr~Av~~--h~~yt~~ai~G~gvDrHLlgLk~~a~e~~--~~iPel 521 (612)
T KOG3717|consen 448 RTDTIRSASTESLEFVKAMD--DSSVPKSEKLELLRKAVQA--HTKYTKRAIRGNGVDRHLLGLKLMAIENC--KPIPEL 521 (612)
T ss_pred cccccccCCHHHHHHHHHhh--CCCCCHHHHHHHHHHHHHH--HHHHHHHHhccccchHHHHHHHHHHHHhC--CCcchh
Confidence 32 345667888775 4567888888777655432 45688888888889999999999999985 777766
Q ss_pred hc
Q 003205 540 LS 541 (839)
Q Consensus 540 l~ 541 (839)
.+
T Consensus 522 F~ 523 (612)
T KOG3717|consen 522 FK 523 (612)
T ss_pred hc
Confidence 54
No 446
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.56 E-value=2.3e+02 Score=33.00 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.9
Q ss_pred ceEEEECCCCcEEEEeecCCeE
Q 003205 219 SQKMAVSPNGNFVACFTHDGRL 240 (839)
Q Consensus 219 i~~ia~Spng~~iA~~~~~g~i 240 (839)
|.+|.+||.|..+|+.+.+|..
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~ 127 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLM 127 (741)
T ss_pred EEEEEecCCCceEEEecCCeeE
Confidence 6799999999999999999963
No 447
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=41.41 E-value=6.2e+02 Score=29.33 Aligned_cols=57 Identities=11% Similarity=0.153 Sum_probs=37.0
Q ss_pred CCeEEEeecCCCeEEEEEe-CCeEEEEeCCCCccc--cCCCCCc-cccccCeEEEEEECCe
Q 003205 88 GRLIGMSWSEDQTLICVVQ-DGTVYRYNIHAELIE--PNASMGK-ECFEENVVECVFWGNG 144 (839)
Q Consensus 88 ~~I~~~~fs~de~Lv~v~~-dGtv~l~~~~G~~~~--~~~g~~~-~~~~~~V~~~~~~~~G 144 (839)
...++|.|.||+.+++... .|.|++++..+...+ ..++... ..-+.+...+.++|+-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 6789999999999888887 599999965432111 1111100 0016778888887654
No 448
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=41.32 E-value=6.6e+02 Score=31.29 Aligned_cols=90 Identities=19% Similarity=0.242 Sum_probs=57.3
Q ss_pred hHHHHhhccCCCCCCch-----HHHHHHHhcCCHHHHHHhhccCCCH---------HHHHHHHHHcCCHHHHHHHHHhc-
Q 003205 739 DALERFSKEKRPPIGYR-----PFVEACVDADEKGEALKYIPKLVDP---------RERAEAYARIGMAKEAADAASQA- 803 (839)
Q Consensus 739 ~~L~~f~~~KKspIgye-----pfv~~~~~~~~~~ea~~yI~~i~d~---------~~r~~~~~~~~~~~~A~~~a~~~- 803 (839)
+-|..|.-.+..+..+. -.+++++..|++++|..|...+.+- -....+|..+|.+++|++...+-
T Consensus 397 e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl 476 (895)
T KOG2076|consen 397 EALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVL 476 (895)
T ss_pred HHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44445555455444443 3788999999999998888766431 45678999999999999764331
Q ss_pred ----C--C-HHHHHHHHHHhcCChhHHHHHHH
Q 003205 804 ----K--D-GELLGRLKLTFAQNAAASSIFDT 828 (839)
Q Consensus 804 ----k--d-~~~L~~i~~~~~~~~~~~~~i~~ 828 (839)
. | +-.|..|+.+.++.+.+.+.+.+
T Consensus 477 ~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 477 ILAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred hcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 1 1 23566666665554444444443
No 449
>PRK00400 hisE phosphoribosyl-ATP pyrophosphatase; Validated
Probab=41.22 E-value=1.8e+02 Score=26.40 Aligned_cols=83 Identities=14% Similarity=0.173 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHHHHhcCCCCCCchhhhhc--cCchHHHHHHHHHcCCchHHHHHH
Q 003205 488 VTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLS--IGEEDTALVKATESGDTDLVYLVI 565 (839)
Q Consensus 488 ~~l~~~I~~kl~~~~~is~~~IA~~A~~~gR~~LA~~Ll~~E~~~~~qV~lLl~--~~~~~~AL~~Ai~S~D~dLI~~vl 565 (839)
++|.+.|.+|....|.-||+ ..-++.|-..++.++-+. -+.+.+- -++. +.+..--.||+|.+|
T Consensus 6 ~~L~~~I~~Rk~~~~~~SYT---~~L~~~G~~ki~kKlgEE------a~E~i~A~~~~d~-----~~~i~E~ADLlYHll 71 (105)
T PRK00400 6 ERLAATIEERKGADPEGSYT---AKLLDKGLDKILKKVGEE------ATEVVIAAKDGDR-----EELVYEIADLLYHLL 71 (105)
T ss_pred HHHHHHHHHHHhCCCCCcHH---HHHHHCCHHHHHHHHHHH------HHHHHHHHHcCCH-----HHHHHHHHHHHHHHH
Confidence 57889999999888889997 345567888888776542 1111111 0111 122222368899888
Q ss_pred HHHHhh-CChhHHHHHHhcC
Q 003205 566 FHIWQK-RPALEFFGMIQTR 584 (839)
Q Consensus 566 l~l~~~-l~~~~f~~~l~~~ 584 (839)
+-|..+ .++++....|.++
T Consensus 72 VlL~~~gv~~~dV~~eL~~R 91 (105)
T PRK00400 72 VLLAARGISLEDVLAELERR 91 (105)
T ss_pred HHHHHcCCCHHHHHHHHHHH
Confidence 776554 5677777766553
No 450
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=40.34 E-value=9.9e+02 Score=31.36 Aligned_cols=68 Identities=9% Similarity=0.186 Sum_probs=38.0
Q ss_pred CeEEEeecCCCeEEEEEeCCeEEEEeCCCCcccc-CCCCCccccccCeEEEEEEC-CeEEEEec--CCeEEEEecC
Q 003205 89 RLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEP-NASMGKECFEENVVECVFWG-NGVVCVTE--ANRYFCMADF 160 (839)
Q Consensus 89 ~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~~~~-~~g~~~~~~~~~V~~~~~~~-~G~v~~t~--~~~~~~v~~~ 160 (839)
..++++.-|||.|+++.-|- ||....+|+..+. .++.. . ..-=.-..++| +|-..++. +.++|.|.+.
T Consensus 366 aPvala~a~DGSl~VGDfNy-IRRI~~dg~v~tIl~L~~t-~--~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl 437 (1899)
T KOG4659|consen 366 APVALAYAPDGSLIVGDFNY-IRRISQDGQVSTILTLGLT-D--TSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSL 437 (1899)
T ss_pred ceeeEEEcCCCcEEEccchh-eeeecCCCceEEEEEecCC-C--ccceeEEEecCcCceEEecCCCcceEEEeccC
Confidence 34888999999998887776 5556666665221 11110 0 11113355666 77666553 3345655554
No 451
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=40.20 E-value=91 Score=32.36 Aligned_cols=87 Identities=17% Similarity=0.150 Sum_probs=46.7
Q ss_pred CCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEE---eCCCCcccc-CCCCCccccccCeEEEE
Q 003205 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRY---NIHAELIEP-NASMGKECFEENVVECV 139 (839)
Q Consensus 64 ~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~---~~~G~~~~~-~~g~~~~~~~~~V~~~~ 139 (839)
..-+|.|||.+|+++.++.... | ...|.|..-..=-....+|.|.+- .-.|+.... ...- ...|..+.
T Consensus 124 ~~v~v~I~D~~G~vV~t~~~~~--G-~~~f~WDG~d~~G~~l~~G~Yt~~V~A~~~g~~~~~~~~~~-----~g~V~~V~ 195 (223)
T PRK12813 124 DKAELVVRDAAGAEVARETVPV--G-AGPVEWAGEDADGNPLPNGAYSFVVESYSGGELLDTEPAEV-----YSRIVEAQ 195 (223)
T ss_pred ceEEEEEEcCCCCEEEEEeeCC--C-ceeEEeCCcCCCCCcCCCccEEEEEEEEeCCceeeeeeeeE-----EEEEEEEE
Confidence 3568999999999999998743 4 356888631111112255655432 223433211 1000 33567777
Q ss_pred EECCeEEEEecCCeEEEEe
Q 003205 140 FWGNGVVCVTEANRYFCMA 158 (839)
Q Consensus 140 ~~~~G~v~~t~~~~~~~v~ 158 (839)
+-++|..+...++..+.+.
T Consensus 196 ~~~g~~~L~l~gg~~V~l~ 214 (223)
T PRK12813 196 GGSGGTVLVLEGGIEVPAS 214 (223)
T ss_pred ecCCceEEEEcCCcEEeHH
Confidence 6555655555554433333
No 452
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=39.51 E-value=73 Score=23.05 Aligned_cols=40 Identities=25% Similarity=0.464 Sum_probs=26.9
Q ss_pred EcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEE-eCCeEEEE
Q 003205 71 FNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVV-QDGTVYRY 113 (839)
Q Consensus 71 y~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~-~dGtv~l~ 113 (839)
|+..|+++.... .. |....+.|...|+|+... .+|.+..|
T Consensus 1 yd~~g~l~~~~~-p~--G~~~~~~YD~~Grl~~~tdp~g~~~~~ 41 (42)
T TIGR01643 1 YDAAGRLTGSTD-AD--GTTTRYTYDAAGRLVEITDADGGSTRY 41 (42)
T ss_pred CCCCCCEEEEEC-CC--CCEEEEEECCCCCEEEEECCCCCEEEe
Confidence 567788876543 33 788888888888886444 56655443
No 453
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=39.10 E-value=16 Score=37.89 Aligned_cols=71 Identities=21% Similarity=0.221 Sum_probs=37.6
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEe
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYN 114 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~ 114 (839)
-.|+++|+|-+.|+-.+ ++.... ....+.=..+ ...+.|.+=.|+.. ..+.+.++|.|..|..||++..+.
T Consensus 37 ~~i~~~P~g~lY~I~~~--~lY~~~-~~~~~~~~~~-~~~~~Ig~g~W~~F----~~i~~d~~G~LYaV~~~G~lyR~~ 107 (229)
T PF14517_consen 37 RDIAAGPNGRLYAIRND--GLYRGS-PSSSGGNTWD-SGSKQIGDGGWNSF----KFIFFDPTGVLYAVTPDGKLYRHP 107 (229)
T ss_dssp SEEEE-TTS-EEEEETT--EEEEES----STT--HH-HH-EEEE-S-GGG-----SEEEE-TTS-EEEEETT-EEEEES
T ss_pred ceEEEcCCceEEEEECC--ceEEec-CCccCccccc-ccCcccccCcccce----eEEEecCCccEEEeccccceeecc
Confidence 38899999999998753 222110 0111111112 44466776667662 277789999999999999985553
No 454
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=38.81 E-value=43 Score=38.00 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=31.7
Q ss_pred eEEEECCCCcEEEEee-cCC----eEEEEecCCCCccccccCCCCCCCCceeeecCceEEE
Q 003205 220 QKMAVSPNGNFVACFT-HDG----RLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLL 275 (839)
Q Consensus 220 ~~ia~Spng~~iA~~~-~~g----~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~ 275 (839)
..+++||||+++|..- ..| ++++.+.+-++.+..- .. ......+.|..++..+.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~-~~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IE-NPKFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EE-EEESEEEEECTTSSEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-cc-ccccceEEEeCCCCEEE
Confidence 4678999999998764 344 3888877655444221 11 11223488886644443
No 455
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=38.65 E-value=12 Score=35.39 Aligned_cols=80 Identities=16% Similarity=0.152 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHHHHhcCCCCCCchhhhhccCchHHHHHHHHHcCCchHHHHHHHH
Q 003205 488 VTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFH 567 (839)
Q Consensus 488 ~~l~~~I~~kl~~~~~is~~~IA~~A~~~gR~~LA~~Ll~~E~~~~~qV~lLl~~~~~~~AL~~Ai~S~D~dLI~~vll~ 567 (839)
+++.+.+. .....+...+++.+.+.|..+-|.-|...=....+-+-++..+++++.|++-|.+.+|+++...++-+
T Consensus 59 ~~l~~~L~----~~~~yd~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~ 134 (143)
T PF00637_consen 59 EKLLEFLK----TSNNYDLDKALRLCEKHGLYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKY 134 (143)
T ss_dssp CHHHHTTT----SSSSS-CTHHHHHHHTTTSHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHH
T ss_pred hHHHHHcc----cccccCHHHHHHHHHhcchHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHH
Confidence 44444443 44557888899999999999999999999888888888888999999999999999999999998876
Q ss_pred HHhh
Q 003205 568 IWQK 571 (839)
Q Consensus 568 l~~~ 571 (839)
+...
T Consensus 135 ~l~~ 138 (143)
T PF00637_consen 135 CLDS 138 (143)
T ss_dssp HCTS
T ss_pred HHhc
Confidence 6554
No 456
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=38.64 E-value=3.8e+02 Score=29.59 Aligned_cols=106 Identities=15% Similarity=0.193 Sum_probs=63.9
Q ss_pred HHHHHHHcCCcchHHhHHhHc----CCCh----HHHHHHHHHHHHhCCChhHHHHhhcc--CCCCC---CchHHHHHHHh
Q 003205 697 TIRTCIVLGNHRAAMKVKTEF----KVSE----KRWYWLKVFALATKRDWDALERFSKE--KRPPI---GYRPFVEACVD 763 (839)
Q Consensus 697 ti~~l~~~~~~k~a~~l~k~f----kvsd----kr~~~~kl~ala~~~~w~~L~~f~~~--KKspI---gyepfv~~~~~ 763 (839)
....+...|+.+.|..+-++. ..+. ..++......+.+.+++++-.+.... +..|- .+--......+
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 226 (389)
T PRK11788 147 LLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALA 226 (389)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH
Confidence 334445567776655543332 2111 12445556677788999887766642 22222 22334567788
Q ss_pred cCCHHHHHHhhccCC--CHH-------HHHHHHHHcCCHHHHHHHHHh
Q 003205 764 ADEKGEALKYIPKLV--DPR-------ERAEAYARIGMAKEAADAASQ 802 (839)
Q Consensus 764 ~~~~~ea~~yI~~i~--d~~-------~r~~~~~~~~~~~~A~~~a~~ 802 (839)
.|++++|..++.++. ++. .-...|.+.|.+.+|++...+
T Consensus 227 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 227 QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999988887764 222 234677888888888876554
No 457
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=38.63 E-value=5.2e+02 Score=27.60 Aligned_cols=119 Identities=13% Similarity=0.130 Sum_probs=64.7
Q ss_pred CceeEEEecCCCCCeEEEeecCCCeEE-EEEeCC--eEEEEeCC-CCc-cccCCCCCccccccCeEEEEEECCeEEEEec
Q 003205 76 VLISETVWKNPGGRLIGMSWSEDQTLI-CVVQDG--TVYRYNIH-AEL-IEPNASMGKECFEENVVECVFWGNGVVCVTE 150 (839)
Q Consensus 76 ~ll~ti~~~~~~~~I~~~~fs~de~Lv-~v~~dG--tv~l~~~~-G~~-~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~ 150 (839)
+.+.+.+++. ..-.-++.|.+++.|. +-..-| .++.|++. |+. .+..++.. .+-+ .+.++++-+..+|=
T Consensus 34 ~vv~~ypHd~-~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~--~FgE---Git~~~d~l~qLTW 107 (264)
T PF05096_consen 34 EVVETYPHDP-TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR--YFGE---GITILGDKLYQLTW 107 (264)
T ss_dssp EEEEEEE--T-T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----EE---EEEEETTEEEEEES
T ss_pred EEEEECCCCC-cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc--ccce---eEEEECCEEEEEEe
Confidence 6788888776 2457888898888874 555566 57778864 665 34444331 1112 23556677777775
Q ss_pred CCeEEEEecCCCc-eEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCC
Q 003205 151 ANRYFCMADFATM-KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDG 210 (839)
Q Consensus 151 ~~~~~~v~~~~~~-~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~ 210 (839)
..+...+.+.+.. ...+++- ....|-+-. ||+.++.-+-.+.++.+|...
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y-----~~EGWGLt~-----dg~~Li~SDGS~~L~~~dP~~ 158 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPY-----PGEGWGLTS-----DGKRLIMSDGSSRLYFLDPET 158 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE------SSS--EEEE-----CSSCEEEE-SSSEEEEE-TTT
T ss_pred cCCeEEEEccccceEEEEEec-----CCcceEEEc-----CCCEEEEECCccceEEECCcc
Confidence 4444444444322 2223321 236786642 777666666677888888764
No 458
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=37.60 E-value=1.2e+02 Score=31.31 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=16.5
Q ss_pred CCeEEEEEeCCeEEEEeCC
Q 003205 98 DQTLICVVQDGTVYRYNIH 116 (839)
Q Consensus 98 de~Lv~v~~dGtv~l~~~~ 116 (839)
+-.++|++.||.|.+|+++
T Consensus 70 ~~~~~vG~~dg~v~~~n~n 88 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWN 88 (238)
T ss_pred CceEEeecccceEEEecCC
Confidence 5679999999999999765
No 459
>PF09958 DUF2192: Uncharacterized protein conserved in archaea (DUF2192); InterPro: IPR018693 This family of various hypothetical archaeal proteins has no known function.
Probab=36.82 E-value=4.8e+02 Score=27.14 Aligned_cols=62 Identities=19% Similarity=0.258 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHhchhcccccccChhHHHHHhhhhhhhhccCCCCCcccccHHHHHhCChHHHHHHHHHcCChHHHHHHHH
Q 003205 382 DISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISE 461 (839)
Q Consensus 382 d~~~Qk~LL~AAsfGk~f~~~~~~~~fv~~c~~LRvLn~lr~~~igi~lT~~Q~~~l~~~~li~rL~~r~~~~lA~~I~~ 461 (839)
|...--++||-+ |-+..+.-++-+.|++ .||.+... - +.+=.++.+.-.+|.|++||+
T Consensus 119 de~~vaR~LR~~-fT~~vlgF~~E~~l~k---~lr~~~~a-~-----------------pe~~~t~~~y~rFY~AfKiAE 176 (231)
T PF09958_consen 119 DENKVARVLRLV-FTKVVLGFFDEEELIK---ALRKLEEA-F-----------------PELKETARSYARFYIAFKIAE 176 (231)
T ss_pred hHHHHHHHHHHH-HHHHHHccCCHHHHHH---HHHHHHHh-C-----------------hHHHHHHHHHHHHHHHHHHHH
Confidence 666667788765 5555565566666654 45555554 1 345678888899999999999
Q ss_pred HhCC
Q 003205 462 YLGM 465 (839)
Q Consensus 462 ~l~~ 465 (839)
..-.
T Consensus 177 ~Ia~ 180 (231)
T PF09958_consen 177 AIAE 180 (231)
T ss_pred HHHh
Confidence 6543
No 460
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=36.26 E-value=9.2e+02 Score=29.80 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=18.8
Q ss_pred CCCCcEEEEEEeCCeEEEEecCC
Q 003205 188 TMTGSVEVLIGTDAGILMLDEDG 210 (839)
Q Consensus 188 S~~~~~~v~~s~d~tv~l~~~~~ 210 (839)
|+++..++.+..|+++.++|...
T Consensus 158 s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 158 SESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCCCCeEEEEecCCEEEEEecCC
Confidence 44778888889999999998864
No 461
>PRK13615 lipoprotein LpqB; Provisional
Probab=36.13 E-value=7.9e+02 Score=29.30 Aligned_cols=132 Identities=12% Similarity=0.075 Sum_probs=0.0
Q ss_pred EEEEECCeEEEEecCCe-EEEEecCCCceEE-----EcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCC
Q 003205 137 ECVFWGNGVVCVTEANR-YFCMADFATMKVC-----ELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDG 210 (839)
Q Consensus 137 ~~~~~~~G~v~~t~~~~-~~~v~~~~~~~~~-----~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~ 210 (839)
.+.++.+|..++-.+.. .+.+....++... .|..|..+..--.|.+..- +...++....+|.......+-
T Consensus 338 s~avS~dg~~~A~v~~~~~l~vg~~~~~~~~~~~~~~Lt~PS~d~~g~vWtv~~g----~~~~l~~~~~~G~~~~v~v~~ 413 (557)
T PRK13615 338 AATLSADGRQAAVRNASGVWSVGDGDRDAVLLDTRPGLVAPSLDAQGYVWSTPAS----DPRGLVAWGPDGVGHPVAVSW 413 (557)
T ss_pred cceEcCCCceEEEEcCCceEEEecCCCcceeeccCCccccCcCcCCCCEEEEeCC----CceEEEEecCCCceEEeeccc
Q ss_pred cccccCCCceEEEECCCCcEEEEeec---CCeEEE--EecCCC--Ccc----ccccCCCCCCCCceeeecCceEEEE
Q 003205 211 VQKVDDTLSQKMAVSPNGNFVACFTH---DGRLVV--NNTNFS--SPV----IDESCESALPPEQIAWCGMDSVLLY 276 (839)
Q Consensus 211 ~~~~~~~~i~~ia~Spng~~iA~~~~---~g~i~i--~ssd~~--~~l----~e~~~~~~~~p~~~~WcG~d~vv~~ 276 (839)
...++|..+.+|+||-.+|...+ .++|.| .-.+-+ ..| .+.-.... .+.++.|-+++++++.
T Consensus 414 ---~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~-~v~sl~W~~~~~laVl 486 (557)
T PRK13615 414 ---TATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPG-TPLDATWVDELDVATL 486 (557)
T ss_pred ---cCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcC-cceeeEEcCCCEEEEE
No 462
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=36.09 E-value=2.3e+02 Score=31.28 Aligned_cols=57 Identities=18% Similarity=0.297 Sum_probs=37.8
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCc---eeEEE---ecCCCCCeEEEeecCC----CeEEEEE
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVL---ISETV---WKNPGGRLIGMSWSED----QTLICVV 105 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~l---l~ti~---~~~~~~~I~~~~fs~d----e~Lv~v~ 105 (839)
..+++.|+|.++...+ .+.|++++.+|.. +..+. ... .+.+.+++|.|+ +.|.+..
T Consensus 5 ~~~a~~pdG~l~v~e~-------------~G~i~~~~~~g~~~~~v~~~~~v~~~~-~~gllgia~~p~f~~n~~lYv~~ 70 (331)
T PF07995_consen 5 RSMAFLPDGRLLVAER-------------SGRIWVVDKDGSLKTPVADLPEVFADG-ERGLLGIAFHPDFASNGYLYVYY 70 (331)
T ss_dssp EEEEEETTSCEEEEET-------------TTEEEEEETTTEECEEEEE-TTTBTST-TBSEEEEEE-TTCCCC-EEEEEE
T ss_pred eEEEEeCCCcEEEEeC-------------CceEEEEeCCCcCcceecccccccccc-cCCcccceeccccCCCCEEEEEE
Confidence 4689999988877664 6999999988886 33331 111 156899999994 6764444
Q ss_pred e
Q 003205 106 Q 106 (839)
Q Consensus 106 ~ 106 (839)
.
T Consensus 71 t 71 (331)
T PF07995_consen 71 T 71 (331)
T ss_dssp E
T ss_pred E
Confidence 4
No 463
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=35.22 E-value=7.4e+02 Score=28.39 Aligned_cols=109 Identities=18% Similarity=0.211 Sum_probs=57.8
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCC--ceeEEEecC-----CCCCeEEEeecCCCeEEEEEeCCe
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV--LISETVWKN-----PGGRLIGMSWSEDQTLICVVQDGT 109 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~--ll~ti~~~~-----~~~~I~~~~fs~de~Lv~v~~dGt 109 (839)
.|+.+-+|+-.|++- .+..+.|.++|. .+++++-+. ..+.+++|.|. ||..|.+..++.
T Consensus 91 rVsMah~~~sq~V~i-------------~G~~~gYrYdgat~~l~~~~~~~~~p~y~~g~v~Dv~~~-dGryVw~~pgt~ 156 (469)
T PF11134_consen 91 RVSMAHSGGSQAVAI-------------NGKLKGYRYDGATKTLSNWPTDEGYPQYDLGDVVDVTRL-DGRYVWVKPGTG 156 (469)
T ss_pred eEEEEeCCceeEEEE-------------ccccceEEEechhhHhhcCCCcCcccccCccceeEEEec-cceEEEEeCCCc
Confidence 555555555555442 455556666664 455544322 12568999998 888877444443
Q ss_pred EEEE-eCCCCc--cccCCCCCccccccCeEEEEEECCeEEEEec-CCeEEEEec
Q 003205 110 VYRY-NIHAEL--IEPNASMGKECFEENVVECVFWGNGVVCVTE-ANRYFCMAD 159 (839)
Q Consensus 110 v~l~-~~~G~~--~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~-~~~~~~v~~ 159 (839)
...+ ++..+- ..+.---++|-..++|+.+..|.+-++++-. +..+|....
T Consensus 157 ~f~vSdL~D~T~~d~~~~~ytAEsqPD~Ivgl~~~r~~I~~fG~~TiEvf~nTG 210 (469)
T PF11134_consen 157 YFFVSDLEDETKPDRYLDFYTAESQPDNIVGLAVWRREIWCFGASTIEVFYNTG 210 (469)
T ss_pred eEEEeecccccCcchhhhhhhhccCCCceEEEEEeeeeEEEEecccEEEEEccC
Confidence 4445 454321 1111011334447788888888655444443 334555443
No 464
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=35.11 E-value=6.7e+02 Score=27.86 Aligned_cols=102 Identities=25% Similarity=0.366 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHcCCc-ch----HHhHHhHcCCChHHHHHHHHHHHHhCCChhHH----HHhhcc--CCCCCCchHHHHHH
Q 003205 693 SISDTIRTCIVLGNH-RA----AMKVKTEFKVSEKRWYWLKVFALATKRDWDAL----ERFSKE--KRPPIGYRPFVEAC 761 (839)
Q Consensus 693 Sl~~ti~~l~~~~~~-k~----a~~l~k~fkvsdkr~~~~kl~ala~~~~w~~L----~~f~~~--KKspIgyepfv~~~ 761 (839)
||.+ |+.|++.+.. |. -.+|+|--| . .--.+..++.++|.+- ++..+. .-+||-|.-|=-.|
T Consensus 242 sL~~-iRECLKldpdHK~Cf~~YKklkKv~K----~--les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c 314 (504)
T KOG0624|consen 242 SLKE-IRECLKLDPDHKLCFPFYKKLKKVVK----S--LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLC 314 (504)
T ss_pred HHHH-HHHHHccCcchhhHHHHHHHHHHHHH----H--HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheee
Confidence 4433 7889987642 22 122222111 1 1123466777888543 233332 12677777665555
Q ss_pred ---HhcCCHHHHHH----hhccCCC----HHHHHHHHHHcCCHHHHHHHHH
Q 003205 762 ---VDADEKGEALK----YIPKLVD----PRERAEAYARIGMAKEAADAAS 801 (839)
Q Consensus 762 ---~~~~~~~ea~~----yI~~i~d----~~~r~~~~~~~~~~~~A~~~a~ 801 (839)
-+.+++.||.. -+...+| .-+|.+.|+--.||.+||+...
T Consensus 315 ~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye 365 (504)
T KOG0624|consen 315 TCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYE 365 (504)
T ss_pred ecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34567777643 3444444 2689999999999999997643
No 465
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=34.77 E-value=51 Score=28.13 Aligned_cols=32 Identities=13% Similarity=0.314 Sum_probs=23.7
Q ss_pred CceEEEEcCCCCceeEEEecCCCCCeEEEeec
Q 003205 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWS 96 (839)
Q Consensus 65 ~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs 96 (839)
.-+|.|||.+|+++.++.......-...|.|.
T Consensus 26 ~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~Wd 57 (81)
T PF13860_consen 26 NVTVTIYDSNGQVVRTISLGSQSAGEHSFTWD 57 (81)
T ss_dssp EEEEEEEETTS-EEEEEEEEECSSEEEEEEE-
T ss_pred EEEEEEEcCCCCEEEEEEcCCcCCceEEEEEC
Confidence 45899999999999999875423456888887
No 466
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=34.70 E-value=2.7e+02 Score=31.10 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=28.0
Q ss_pred CCeEEEeecCCC-eEEEEEeCCeEEEEeCCCCccccCCC
Q 003205 88 GRLIGMSWSEDQ-TLICVVQDGTVYRYNIHAELIEPNAS 125 (839)
Q Consensus 88 ~~I~~~~fs~de-~Lv~v~~dGtv~l~~~~G~~~~~~~g 125 (839)
|+..++.|...+ +|+++..---+...++.|+..+...+
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~ 153 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLAD 153 (376)
T ss_pred CCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccc
Confidence 789999999987 88887655555556888888554443
No 467
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=34.16 E-value=6.7e+02 Score=27.59 Aligned_cols=101 Identities=13% Similarity=0.093 Sum_probs=66.5
Q ss_pred HHcCCcchHHhHHhH-cCCC--hHHHHHHHHHHHHhCCChhHHHHhhcc--CCCCCC----chHHHHHHHhcCCHHHHHH
Q 003205 702 IVLGNHRAAMKVKTE-FKVS--EKRWYWLKVFALATKRDWDALERFSKE--KRPPIG----YRPFVEACVDADEKGEALK 772 (839)
Q Consensus 702 ~~~~~~k~a~~l~k~-fkvs--dkr~~~~kl~ala~~~~w~~L~~f~~~--KKspIg----yepfv~~~~~~~~~~ea~~ 772 (839)
+..|+.+.|.+.-++ .++. ....+......+.+.+++++-.++... ...|-. +...+.++.+.|+.++|..
T Consensus 191 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 270 (389)
T PRK11788 191 LARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLE 270 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 455776666554333 2332 234566677889999999887766642 223321 2334577788999999988
Q ss_pred hhccCC----CH---HHHHHHHHHcCCHHHHHHHHHh
Q 003205 773 YIPKLV----DP---RERAEAYARIGMAKEAADAASQ 802 (839)
Q Consensus 773 yI~~i~----d~---~~r~~~~~~~~~~~~A~~~a~~ 802 (839)
++.++. +. ....+++.+.|++.+|.+...+
T Consensus 271 ~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 271 FLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 877642 21 5567889999999999987643
No 468
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=33.54 E-value=3.7e+02 Score=30.96 Aligned_cols=41 Identities=29% Similarity=0.485 Sum_probs=30.9
Q ss_pred eeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEE--eCCCCc
Q 003205 78 ISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRY--NIHAEL 119 (839)
Q Consensus 78 l~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~--~~~G~~ 119 (839)
+..+++..+...|+.+++..+ ++++++.+|+++-| +.+|++
T Consensus 221 ~~~~p~~v~~~~i~qla~G~d-h~i~lt~~G~vy~~Gs~qkgql 263 (476)
T COG5184 221 IQFTPLKVPKKAIVQLAAGAD-HLIALTNEGKVYGWGSNQKGQL 263 (476)
T ss_pred eeeeeeecCchheeeeccCCc-eEEEEecCCcEEEecCCccccc
Confidence 445666651137999999866 99999999999988 466776
No 469
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=33.19 E-value=97 Score=22.17 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=20.4
Q ss_pred EcCCCCceeEEEecCCCCCeEEEeecCCCeEEE
Q 003205 71 FNSAGVLISETVWKNPGGRLIGMSWSEDQTLIC 103 (839)
Q Consensus 71 y~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~ 103 (839)
||..|++++... .. |....+.+.+.++++.
T Consensus 1 YD~~G~l~~~~d-~~--G~~~~y~YD~~g~l~~ 30 (38)
T PF05593_consen 1 YDANGRLTSVTD-PD--GRTTRYTYDAAGRLTS 30 (38)
T ss_pred CCCCCCEEEEEc-CC--CCEEEEEECCCCCEEE
Confidence 677777777662 22 6777777777777653
No 470
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=32.92 E-value=2e+02 Score=23.74 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=26.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhc-----CCHHHHHHHHH
Q 003205 781 RERAEAYARIGMAKEAADAASQA-----KDGELLGRLKL 814 (839)
Q Consensus 781 ~~r~~~~~~~~~~~~A~~~a~~~-----kd~~~L~~i~~ 814 (839)
-+|.+-+...|+|.+|+.+|... |..+-+++++.
T Consensus 10 ~~~F~~l~~~g~y~eAA~~AA~sP~giLRt~~Ti~rFk~ 48 (66)
T PF13838_consen 10 VQQFNELFSQGQYEEAAKVAANSPRGILRTPETINRFKQ 48 (66)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHSGGGTT-SHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCccchhcCHHHHHHHHc
Confidence 57888999999999999999987 46677777773
No 471
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=32.21 E-value=1.3e+02 Score=32.40 Aligned_cols=67 Identities=21% Similarity=0.289 Sum_probs=51.9
Q ss_pred HHhHHhHc-CCChHHHHHHHHHHHHhCCChhHHHHhhccC-------CCCCCchHHHHHHHhcCCHHHHHHhhcc
Q 003205 710 AMKVKTEF-KVSEKRWYWLKVFALATKRDWDALERFSKEK-------RPPIGYRPFVEACVDADEKGEALKYIPK 776 (839)
Q Consensus 710 a~~l~k~f-kvsdkr~~~~kl~ala~~~~w~~L~~f~~~K-------KspIgyepfv~~~~~~~~~~ea~~yI~~ 776 (839)
++-+..+| +-.++.---.-|++||+.++|..|.+|-... +=+=+|..|++.+.+.|.+.-..+.|..
T Consensus 189 V~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 189 VDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 44455555 4556667788899999999999999997432 3345566799999999999999988764
No 472
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=32.19 E-value=1e+02 Score=37.91 Aligned_cols=109 Identities=13% Similarity=0.050 Sum_probs=60.6
Q ss_pred ccCeEEEEEE----CCeEEEEecCCeEEEEecCCC---ceEEEcCCCCCCCCC--ceEEEeCCCCCCCCcEEEEEEeCCe
Q 003205 132 EENVVECVFW----GNGVVCVTEANRYFCMADFAT---MKVCELARPEVEELP--HCVAVIEPKYTMTGSVEVLIGTDAG 202 (839)
Q Consensus 132 ~~~V~~~~~~----~~G~v~~t~~~~~~~v~~~~~---~~~~~l~~~~~~~~~--~~w~vi~~~~S~~~~~~v~~s~d~t 202 (839)
..+|.+..|- +-|. ...++.-+|.|.-+++ +.+..-+..+.++.+ -.|+-+-+ +...+++-..+++
T Consensus 132 ~G~v~dl~fah~~~pk~~-~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~----~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 132 PGGVGDLQFAHTKCPKGR-RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV----NKVYICYGLKGGE 206 (1283)
T ss_pred CCCcccccccccCChHHH-HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc----ccceeeeccCCCc
Confidence 4556666662 3443 2223333465554443 222111222333333 35765444 5567777777888
Q ss_pred EEEEecCCcc----cccCCCceEE-----------EECCCCcEEEEeecCCeEEEEec
Q 003205 203 ILMLDEDGVQ----KVDDTLSQKM-----------AVSPNGNFVACFTHDGRLVVNNT 245 (839)
Q Consensus 203 v~l~~~~~~~----~~~~~~i~~i-----------a~Spng~~iA~~~~~g~i~i~ss 245 (839)
+.++..+... +.|..++..| .+||||..+|....||.+..|..
T Consensus 207 i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 207 IRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 8887766432 2343333222 48999999999999998666553
No 473
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=32.15 E-value=8.2e+02 Score=28.02 Aligned_cols=141 Identities=6% Similarity=0.055 Sum_probs=72.4
Q ss_pred CeEEEEEeCCeEEEEeCCCCc-cccCCCCCccccccCeEEE---EE-EC---CeEEEEecCC-eEEEEecCCCc------
Q 003205 99 QTLICVVQDGTVYRYNIHAEL-IEPNASMGKECFEENVVEC---VF-WG---NGVVCVTEAN-RYFCMADFATM------ 163 (839)
Q Consensus 99 e~Lv~v~~dGtv~l~~~~G~~-~~~~~g~~~~~~~~~V~~~---~~-~~---~G~v~~t~~~-~~~~v~~~~~~------ 163 (839)
+++++++.+|++|+|.+.++- ....+--+.+ +...|.++ +| .+ .-++|+.-.. -+|.+....+.
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 467899999999999765432 1100000111 13345543 33 11 3444444332 35555433221
Q ss_pred -eEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-------cccCCCceEEEECCCCcEEEEee
Q 003205 164 -KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-------KVDDTLSQKMAVSPNGNFVACFT 235 (839)
Q Consensus 164 -~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-------~~~~~~i~~ia~Spng~~iA~~~ 235 (839)
.+..+.+..+....-.+++-+-.-..+...++.=+.||++..++.+... ...++| |+++|.-+-+.+.+
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgP---l~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGP---LCYCPRTDSFVTAS 193 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcC---eEEeecCCEEEEec
Confidence 2333333334222223444333223336788888899999999888654 244566 45555556666666
Q ss_pred cCCeEEEE
Q 003205 236 HDGRLVVN 243 (839)
Q Consensus 236 ~~g~i~i~ 243 (839)
.+.++.-+
T Consensus 194 ss~~l~~Y 201 (418)
T PF14727_consen 194 SSWTLECY 201 (418)
T ss_pred CceeEEEe
Confidence 55555444
No 474
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=31.73 E-value=74 Score=33.67 Aligned_cols=174 Identities=17% Similarity=0.231 Sum_probs=85.5
Q ss_pred CCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCC---e--EEEEEeCCeEEEE-eCCCCccccCCCC-CccccccCeE
Q 003205 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQ---T--LICVVQDGTVYRY-NIHAELIEPNASM-GKECFEENVV 136 (839)
Q Consensus 64 ~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de---~--Lv~v~~dGtv~l~-~~~G~~~~~~~g~-~~~~~~~~V~ 136 (839)
.++.+++|... .+.+.+.....+..|.+| -.|+ . .+.|.....|.+| |+. -+.+|.++. +.+..+..||
T Consensus 43 ~~~kLKVykGt-~l~~E~~L~d~P~ai~sF--y~d~~ep~~P~iAVA~G~~vyiYkNlk-P~yKftlP~~~~~~~E~eiW 118 (257)
T PF14779_consen 43 QNMKLKVYKGT-SLISEITLPDLPSAIVSF--YMDEHEPRTPAIAVAAGPSVYIYKNLK-PFYKFTLPPLEINPLEQEIW 118 (257)
T ss_pred CCceEEEEcCC-ChhhcccccCCCeEEEEE--eccCCCCCCCeEEEEeCCEEEEEeccc-ceeeecCCCCCCCHHHHHHH
Confidence 57899999854 455555554423445544 3333 2 2666777779999 554 345555544 2222244444
Q ss_pred EEEEE-----------------C-CeEEEEecCCeEEEEecCC-CceEEEcCCCCCC--CCCceEEEeCCCCCCC-C-cE
Q 003205 137 ECVFW-----------------G-NGVVCVTEANRYFCMADFA-TMKVCELARPEVE--ELPHCVAVIEPKYTMT-G-SV 193 (839)
Q Consensus 137 ~~~~~-----------------~-~G~v~~t~~~~~~~v~~~~-~~~~~~l~~~~~~--~~~~~w~vi~~~~S~~-~-~~ 193 (839)
. ++. + .|..+-+.+.++-.+..-+ .....+..+.++. ..+.|++.+.-.-+.+ . +-
T Consensus 119 ~-~~~~~~i~~~~l~~~L~~lr~~~~~~LS~rSl~~L~l~~ee~~~fi~~~k~~pl~~~t~ITcm~tikk~~~d~~a~sc 197 (257)
T PF14779_consen 119 Q-QLREGKIDPETLKEMLESLRDIAGVKLSPRSLRFLQLDPEEREAFIERYKDSPLKRQTVITCMATIKKSSADEDAVSC 197 (257)
T ss_pred H-hcccCCCCHHHHHHHHHHHhhccCCccCHHHHHHHCCCHHHHHHHHHHHhcCCcccCceeEEeeeecccccCCCCcce
Confidence 2 111 1 1222222222222211100 0001111222222 3467777765432222 2 34
Q ss_pred EEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCc----EEEEeecCCeEEEE
Q 003205 194 EVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGN----FVACFTHDGRLVVN 243 (839)
Q Consensus 194 ~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~----~iA~~~~~g~i~i~ 243 (839)
+|+...++.||++|..+.. ....-|+ .|+.+-..+ .|...++||.|++.
T Consensus 198 LViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 198 LVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred EEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 5666679999999999865 2333343 344332111 36667788887765
No 475
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=31.46 E-value=2.2e+02 Score=35.58 Aligned_cols=58 Identities=14% Similarity=0.302 Sum_probs=42.4
Q ss_pred eEEEeCCCCCCCCcEEEE-EEeCC-----eEEEEecCCcc------cccCCCceEEEECCCCcE-EEEeec
Q 003205 179 CVAVIEPKYTMTGSVEVL-IGTDA-----GILMLDEDGVQ------KVDDTLSQKMAVSPNGNF-VACFTH 236 (839)
Q Consensus 179 ~w~vi~~~~S~~~~~~v~-~s~d~-----tv~l~~~~~~~------~~~~~~i~~ia~Spng~~-iA~~~~ 236 (839)
.+.+++|.+||||+.+++ .+.++ .||+-++...- ......|.+-.+.+||.. |...++
T Consensus 349 ~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~gdt~ivyv~~ 419 (912)
T TIGR02171 349 TISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLENGDTVIVYVSD 419 (912)
T ss_pred CCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecCCCCeEEEEEcC
Confidence 356789999999999999 66544 58887766332 455677888889999986 444444
No 476
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=31.32 E-value=2.4e+02 Score=32.03 Aligned_cols=107 Identities=18% Similarity=0.112 Sum_probs=61.1
Q ss_pred HHHHHHHHHHc-CCcchHHhHHhHcCCChHHHHHHHHHHHHhCCChhHHHHhhcc--CCCCCCchH---HHHHHHhcCCH
Q 003205 694 ISDTIRTCIVL-GNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKE--KRPPIGYRP---FVEACVDADEK 767 (839)
Q Consensus 694 l~~ti~~l~~~-~~~k~a~~l~k~fkvsdkr~~~~kl~ala~~~~w~~L~~f~~~--KKspIgyep---fv~~~~~~~~~ 767 (839)
|.+++-.++.. +....|..+-++..-.+...+.+..+.+...++=.+--+++++ ++.|-.++. -++.|++.+..
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 34455444443 2333444444444333344555555665554432222222322 456666664 57778999999
Q ss_pred HHHHHhhccC----CCH----HHHHHHHHHcCCHHHHHHHH
Q 003205 768 GEALKYIPKL----VDP----RERAEAYARIGMAKEAADAA 800 (839)
Q Consensus 768 ~ea~~yI~~i----~d~----~~r~~~~~~~~~~~~A~~~a 800 (839)
+.|.+...+. |+. ..-++.|++.|+|++|.-..
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaL 291 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLAL 291 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 8877666654 322 55688899999999998553
No 477
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=31.16 E-value=1.5e+02 Score=33.71 Aligned_cols=121 Identities=12% Similarity=0.151 Sum_probs=79.5
Q ss_pred CCcEEEEEEeCCeEEEEecCCcc--------cccCCCceEEEECCCCcEEEEeec-CCeEEEEe---cCCCCccccccCC
Q 003205 190 TGSVEVLIGTDAGILMLDEDGVQ--------KVDDTLSQKMAVSPNGNFVACFTH-DGRLVVNN---TNFSSPVIDESCE 257 (839)
Q Consensus 190 ~~~~~v~~s~d~tv~l~~~~~~~--------~~~~~~i~~ia~Spng~~iA~~~~-~g~i~i~s---sd~~~~l~e~~~~ 257 (839)
--+.++.++.||.++-|...+.. ..|.+.|.+++.|.+|...++.+. |..+++.+ -|+-.-+ .
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminmi-----K 93 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMI-----K 93 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhc-----c
Confidence 34678889999999999776532 467788999999999999999777 88777754 2222211 1
Q ss_pred CCCCCCceeeec--CceEE---EE-ecC-EEEEEcCCCCc----------------eEeccCCCeEEeecCCc-eEEEcc
Q 003205 258 SALPPEQIAWCG--MDSVL---LY-WND-MLVMVAPQAEP----------------VQYFYDEPLVLIPECDG-VRILSN 313 (839)
Q Consensus 258 ~~~~p~~~~WcG--~d~vv---~~-~~~-~l~lig~~~~~----------------v~f~~~~~~~l~~E~DG-vRIit~ 313 (839)
....|....|.- .|.+. +. +.+ .+.++-+.++. +.|...+...++..+.| |.-||.
T Consensus 94 L~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~ 173 (558)
T KOG0882|consen 94 LVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSA 173 (558)
T ss_pred cccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecC
Confidence 234789999962 33322 21 222 45555544432 33333456677777778 999999
Q ss_pred Cc
Q 003205 314 SS 315 (839)
Q Consensus 314 ~~ 315 (839)
+.
T Consensus 174 e~ 175 (558)
T KOG0882|consen 174 EG 175 (558)
T ss_pred CC
Confidence 83
No 478
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=30.64 E-value=1.1e+03 Score=28.92 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=77.4
Q ss_pred HHHHHHcCCcchHHhHHhHcCCChHHHHHHHHHHHHhCCChhHHHHhhccCCCCCCchHHHHHHHhcCCHHHH--HHhhc
Q 003205 698 IRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEA--LKYIP 775 (839)
Q Consensus 698 i~~l~~~~~~k~a~~l~k~fkvsdkr~~~~kl~ala~~~~w~~L~~f~~~KKspIgyepfv~~~~~~~~~~ea--~~yI~ 775 (839)
.-.|...|++..|..|-=-|..+-. .|.++|+.++|..-.+.+++-- --|+|.|+...+.--+.|. ...|.
T Consensus 1220 ~~al~~~~~~e~aael~l~f~~~ke-----aida~~~~eewakakqvake~~--p~~~~~idk~yke~lknegkl~eli~ 1292 (1636)
T KOG3616|consen 1220 GGALDEAGCHEAAAELLLLFDLSKE-----AIDAFCEAEEWAKAKQVAKELD--PEMEDEIDKHYKEFLKNEGKLDELID 1292 (1636)
T ss_pred chhhhcccccHHHHHHHHHhhhHHH-----HHHHHHhHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHhccCccccccc
Confidence 3456677888878777777776643 6889999999999888887533 3477777766554333332 12222
Q ss_pred cCCCHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHH
Q 003205 776 KLVDPRERAEAYARIGMAKEAADAASQAKDGELLGRLKLT 815 (839)
Q Consensus 776 ~i~d~~~r~~~~~~~~~~~~A~~~a~~~kd~~~L~~i~~~ 815 (839)
+ |+-.-++|+++.++|..|++.|.++.=...|..+-..
T Consensus 1293 -v-dviaaidl~ien~qwdk~idtak~qnykpil~kyva~ 1330 (1636)
T KOG3616|consen 1293 -V-DVIAAIDLMIENDQWDKAIDTAKKQNYKPILDKYVAL 1330 (1636)
T ss_pred -h-hHHHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHH
Confidence 1 3567889999999999999999999887777766543
No 479
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=29.86 E-value=8.3e+02 Score=28.49 Aligned_cols=212 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC--------CceeEEEe-cCCCCCeEEEeecC-----CCe-
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG--------VLISETVW-KNPGGRLIGMSWSE-----DQT- 100 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G--------~ll~ti~~-~~~~~~I~~~~fs~-----de~- 100 (839)
..+++-|.|..||+.- ..+.+.||...- ....+.+. .. +.|.+|.|-+ ++.
T Consensus 47 ~~l~vDP~~R~i~v~a------------~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~--~~i~~~~FL~~~~~~~~p~ 112 (504)
T PF10433_consen 47 QYLAVDPSGRCIAVSA------------YEGNFLVYPLNRSLDSDIAFSPHINSPIKSE--GNILDMCFLHPSVGYDNPT 112 (504)
T ss_dssp -EEEE-TTSSEEEEEE------------BTTEEEEEE-SS----T-TT---EEEE--S---SEEEEEEEES---S-SS-E
T ss_pred cEEEECCcCCEEEEEe------------cCCeEEEEEecccccccccccccccccccCC--ceEEEEEEEecccCCCCce
Q ss_pred EEEEEeCCeEEE------EeCCCCccccCCCCCccccccC------------eEEEEEECCeEEEEecCCeEEEEecCCC
Q 003205 101 LICVVQDGTVYR------YNIHAELIEPNASMGKECFEEN------------VVECVFWGNGVVCVTEANRYFCMADFAT 162 (839)
Q Consensus 101 Lv~v~~dGtv~l------~~~~G~~~~~~~g~~~~~~~~~------------V~~~~~~~~G~v~~t~~~~~~~v~~~~~ 162 (839)
++++..|..=+. |+....+..-.... ... ++-+.--+.|+++...+.-+|...+...
T Consensus 113 la~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~-----~~~~~l~~~~~~p~~LIPlp~~~ggllV~~~~~i~y~~~~~~~ 187 (504)
T PF10433_consen 113 LAILYVDSQRRTHLVTYEWSLDDGLNHVISKS-----TLPIRLPNEDELPSFLIPLPNPPGGLLVGGENIIIYKNHLIGS 187 (504)
T ss_dssp EEEEEEETT-EEEEEEEE--------EETTTT-----EEEE--EEEE-TTEEEEEE-TTT-SEEEEESSEEEEEE-----
T ss_pred EEEEEEEecccceeEEEeeecccccceeeeec-----cccccccccCCCccEEEEcCCCCcEEEEECCEEEEEecccccc
Q ss_pred ceEEEcCCCCC----CCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcccccCCCceEEEECCCCcEEEEeecCC
Q 003205 163 MKVCELARPEV----EELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQKVDDTLSQKMAVSPNGNFVACFTHDG 238 (839)
Q Consensus 163 ~~~~~l~~~~~----~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~~~~~~~i~~ia~Spng~~iA~~~~~g 238 (839)
+.....+-..- ..-+.+|.. |........++.++.+.+++|
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------p~~~~~~~~~~~~~lL~~e~G 232 (504)
T PF10433_consen 188 GDYSFLSIPSPPSSSSSLWTSWAR-----------------------------------PERNISYDKDGDRILLQDEDG 232 (504)
T ss_dssp -TTEEEEE--H-HHHTS-EEEEEE-----------------------------------------SSTTSSEEEEEETTS
T ss_pred cccccccccCCccCCCceEEEEEe-----------------------------------ccccceecCCCCEEEEEeCCC
Q ss_pred eEEEEecCCCC---ccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCCceEeccCCCeEEeecCCceEEEccCc
Q 003205 239 RLVVNNTNFSS---PVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSS 315 (839)
Q Consensus 239 ~i~i~ssd~~~---~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~~~l~~E~DGvRIit~~~ 315 (839)
.++...-+... .+..++.- ...+..+.+++++ ++.+++-+..|++.-+-+. ...
T Consensus 233 ~l~~l~l~~~~~~i~i~~~g~~-~~~~s~l~~l~~g------~d~lf~gs~~gds~l~~~~----------------~~~ 289 (504)
T PF10433_consen 233 DLYLLTLDNDGGSISITYLGTL-CSIASSLTYLKNG------GDYLFVGSEFGDSQLLQIS----------------LSN 289 (504)
T ss_dssp EEEEEEEEEEEEEEEEEEEEE---S-ESEEEEESTT--------EEEEEESSS-EEEEEEE----------------SES
T ss_pred eEEEEEEEECCCeEEEEEcCCc-CChhheEEEEcCC------CEEEEEEEecCCcEEEEEe----------------CCC
Q ss_pred ceeeeccch
Q 003205 316 MEFLQRVPA 324 (839)
Q Consensus 316 ~~~l~~Vp~ 324 (839)
.++++.+|+
T Consensus 290 l~~~~~~~N 298 (504)
T PF10433_consen 290 LEVLDSLPN 298 (504)
T ss_dssp EEEEEEE--
T ss_pred cEEEEeccC
No 480
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=29.40 E-value=96 Score=20.55 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=13.6
Q ss_pred eEEEECCCCcEEEEeecCCeEEE
Q 003205 220 QKMAVSPNGNFVACFTHDGRLVV 242 (839)
Q Consensus 220 ~~ia~Spng~~iA~~~~~g~i~i 242 (839)
+.|+++++|+++.+=+.++.|++
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEE
Confidence 46677777766555455555554
No 481
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=28.94 E-value=2.5e+02 Score=33.89 Aligned_cols=69 Identities=10% Similarity=0.135 Sum_probs=48.6
Q ss_pred cCCCceEEEECCCCcEEEEeecCCe-EEEEecCCCCccccccC--CCCCCCCceeee----cCceEEEEecCEEEEEcC
Q 003205 215 DDTLSQKMAVSPNGNFVACFTHDGR-LVVNNTNFSSPVIDESC--ESALPPEQIAWC----GMDSVLLYWNDMLVMVAP 286 (839)
Q Consensus 215 ~~~~i~~ia~Spng~~iA~~~~~g~-i~i~ssd~~~~l~e~~~--~~~~~p~~~~Wc----G~d~vv~~~~~~l~lig~ 286 (839)
...+...++-|.-| .+|++..+|+ +.||++.-+. .||.. .......++.|. |+.-+++-|.+.|.|++.
T Consensus 28 ~i~~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~--lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 28 GISNPSLISGSSIK-KIAVVDSSRSELTIWDTRSGV--LEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred CCCCcceEeecccC-cEEEEECCCCEEEEEEcCCcE--EEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 34556778888864 7888887775 9999876333 45543 235577899997 555566678888888875
No 482
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=28.48 E-value=1.1e+02 Score=20.51 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=20.0
Q ss_pred CceEEEECCCCcEEEEeecCCeEEEEe
Q 003205 218 LSQKMAVSPNGNFVACFTHDGRLVVNN 244 (839)
Q Consensus 218 ~i~~ia~Spng~~iA~~~~~g~i~i~s 244 (839)
.|..|+.+++ ++|..|..+.++|++
T Consensus 3 ~i~aia~g~~--~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGDS--WVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccCC--EEEEEeCCCeEEecC
Confidence 4678888876 899999888888864
No 483
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=28.43 E-value=92 Score=29.86 Aligned_cols=53 Identities=17% Similarity=0.094 Sum_probs=35.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHHhc----CChh-HHHHHHHHHHHhh
Q 003205 782 ERAEAYARIGMAKEAADAASQAKDGELLGRLKLTFA----QNAA-ASSIFDTLRDRLS 834 (839)
Q Consensus 782 ~r~~~~~~~~~~~~A~~~a~~~kd~~~L~~i~~~~~----~~~~-~~~~i~~~~~~~~ 834 (839)
+.+.-+++-|+|.+|+..|.+..-+-.+-.|...+- +++. -...++..+..|.
T Consensus 2 Q~L~N~l~~~~y~~Al~LAl~L~~P~~ll~i~~~~~~~~~~~~~~g~~~l~~~i~~L~ 59 (141)
T PF08625_consen 2 QELSNLLRQKDYKEALRLALKLDHPFRLLKILKDLLETEEDEDSIGSEELDEVIKKLD 59 (141)
T ss_pred chHHHHHHhhhHHHHHHHHHhcCCcHHHHHHHHHHHhcccccccchHHHHHHHHHhcC
Confidence 456778999999999999999999765555555443 2211 1245666666554
No 484
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=28.34 E-value=3.5e+02 Score=26.64 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=66.8
Q ss_pred HHHHHHHHHHcCCcchHHhHHhHcCCChHHHHHHHHHHHHhCCChhHHHH---hhccCCCCCCchHHHHHHHhcCCHHHH
Q 003205 694 ISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALER---FSKEKRPPIGYRPFVEACVDADEKGEA 770 (839)
Q Consensus 694 l~~ti~~l~~~~~~k~a~~l~k~fkvsdkr~~~~kl~ala~~~~w~~L~~---f~~~KKspIgyepfv~~~~~~~~~~ea 770 (839)
..+.++.++-.+. ...+..+..++||..--...|=++-++..|||.+.. ++...-=-|...-+-+.++.+...=+-
T Consensus 7 ~R~~~R~~YV~~~-~sLe~aA~~~gVs~~TarrWK~~Ak~~GDDWDk~RaA~~laggg~e~v~~~~l~~f~~Q~~~tmee 85 (165)
T PF08822_consen 7 TRDAVRRAYVFDR-LSLEQAAAKCGVSYATARRWKREAKAKGDDWDKARAAHTLAGGGIEDVARQMLEDFVVQYQATMEE 85 (165)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHhCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666665433 457788899999999999999999999999999962 222111112222233333333332221
Q ss_pred HHhhccCCCHHHHHHHHHHcCC-HHHHHHHHHhc
Q 003205 771 LKYIPKLVDPRERAEAYARIGM-AKEAADAASQA 803 (839)
Q Consensus 771 ~~yI~~i~d~~~r~~~~~~~~~-~~~A~~~a~~~ 803 (839)
.+=-..|+ +++|++++..+++ |..++..+.+.
T Consensus 86 l~~~~~~~-~~~k~~~LasLaDsf~K~vaaskr~ 118 (165)
T PF08822_consen 86 LKENEDMP-PQEKVELLASLADSFSKMVAASKRV 118 (165)
T ss_pred HhcccCCC-HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 12123444 7999999998876 77777665444
No 485
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=28.32 E-value=3.9e+02 Score=30.20 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=8.4
Q ss_pred HHHHhcCCHHHHHHhhcc
Q 003205 759 EACVDADEKGEALKYIPK 776 (839)
Q Consensus 759 ~~~~~~~~~~ea~~yI~~ 776 (839)
+..+..|++++|..++.+
T Consensus 161 ~l~l~~g~~~~Al~~l~~ 178 (398)
T PRK10747 161 RIQLARNENHAARHGVDK 178 (398)
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 344445555554444443
No 486
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=28.11 E-value=62 Score=31.24 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=0.0
Q ss_pred CchhhhhccCchHHHHHHHH-HcCCchHHHHHHHHHHhh
Q 003205 534 KQVPLLLSIGEEDTALVKAT-ESGDTDLVYLVIFHIWQK 571 (839)
Q Consensus 534 ~qV~lLl~~~~~~~AL~~Ai-~S~D~dLI~~vll~l~~~ 571 (839)
.+...+|+--+|..||+.|+ .+.+|+.++.||-.|.+.
T Consensus 23 ~~~D~~Lr~F~y~~ALD~aL~~~~~p~~~vavl~EL~~R 61 (148)
T PF09384_consen 23 SKYDKLLRKFRYKKALDAALVKNKSPEVVVAVLEELIRR 61 (148)
T ss_pred hHHHHHHHcCCHHHHHHHHHhcCCChHHHHHHHHHHHHc
No 487
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=28.08 E-value=5.5e+02 Score=29.15 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=24.2
Q ss_pred CceEEEECCCCcEEEEeecCCeEEEEecCC
Q 003205 218 LSQKMAVSPNGNFVACFTHDGRLVVNNTNF 247 (839)
Q Consensus 218 ~i~~ia~Spng~~iA~~~~~g~i~i~ssd~ 247 (839)
.|.+|++.+..+.+.+.+.+|+|.+|+-..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 388999998889999999999999998653
No 488
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.07 E-value=1.2e+02 Score=37.20 Aligned_cols=65 Identities=11% Similarity=0.114 Sum_probs=57.1
Q ss_pred CCCCCchHHHHHHHhcCCHHHHHHhhccCCCHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHH
Q 003205 749 RPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIGMAKEAADAASQAKDGELLGRLK 813 (839)
Q Consensus 749 KspIgyepfv~~~~~~~~~~ea~~yI~~i~d~~~r~~~~~~~~~~~~A~~~a~~~kd~~~L~~i~ 813 (839)
+--+.++..+..|-.+|..+++..|-.-+.|.+.=+..+++-++|.+|.++...+++.+..-++-
T Consensus 502 ~~~~nretv~~l~~~~~~~e~ll~fA~l~~d~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~a 566 (911)
T KOG2034|consen 502 KDELNRETVYQLLASHGRQEELLQFANLIKDYEFVVSYWIQQENYEEALEVLLNQRNPELFYKYA 566 (911)
T ss_pred HHhhhHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhh
Confidence 44556788899999999999999999999999999999999999999999999998887665543
No 489
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=27.91 E-value=7.4e+02 Score=30.12 Aligned_cols=150 Identities=15% Similarity=0.168 Sum_probs=72.6
Q ss_pred EEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCC---ceeEEEecCCCCCeEEEeecC-----CC-e-EEEEEe-C
Q 003205 39 ACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV---LISETVWKNPGGRLIGMSWSE-----DQ-T-LICVVQ-D 107 (839)
Q Consensus 39 a~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~---ll~ti~~~~~~~~I~~~~fs~-----de-~-Lv~v~~-d 107 (839)
-+.++|..|.+.- ..|.|++|+.+-. .+..+..... ++++.=.|-+ ++ . +++++. +
T Consensus 136 k~~~~~~~I~vvl------------~nG~i~~~d~~~~~l~~~~~l~~~~~-~~v~ys~fv~~~~~~~~~~~ll~v~~~~ 202 (670)
T PF10395_consen 136 KFSSDGKIIYVVL------------ENGSIQIYDFSENSLEKVPQLKLKSS-INVSYSKFVNDFELENGKDLLLTVSQLS 202 (670)
T ss_pred EEecCCCEEEEEE------------cCCcEEEEeccccccccccccccccc-cceehhhhhcccccccCCceEEEEEEcC
Confidence 4455555555553 4799999998222 2223333221 2233223322 22 2 455555 3
Q ss_pred ---CeEEEEeC--CCCc-cccCCCCCccccccCeEEEEEE-CCeEEEEecCCeE--EEEecCCCceEEEcCCCCCCCC-C
Q 003205 108 ---GTVYRYNI--HAEL-IEPNASMGKECFEENVVECVFW-GNGVVCVTEANRY--FCMADFATMKVCELARPEVEEL-P 177 (839)
Q Consensus 108 ---Gtv~l~~~--~G~~-~~~~~g~~~~~~~~~V~~~~~~-~~G~v~~t~~~~~--~~v~~~~~~~~~~l~~~~~~~~-~ 177 (839)
-++|++.+ .+.- .+.+ ....+ ..+..+++|. ..|....-.+..+ |.+.+++-.+...++.. ++.. .
T Consensus 203 ~~k~~ykL~~l~~~~~~~~El~-s~~~e--~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~~~~tI~l~~i-i~~~~~ 278 (670)
T PF10395_consen 203 NSKLSYKLISLSNESSSIFELS-STILE--NFGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQIQKTISLPSI-IDKESD 278 (670)
T ss_pred CCcEEEEEEEeccCCcceEEee-hheec--cCCcccceEEEeCCEEEEEeCCEEEEEEcCCceEEEEEEechh-hccccc
Confidence 24777776 2221 1111 00011 3345566764 4888777766654 33344432223333321 1111 2
Q ss_pred ceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCC
Q 003205 178 HCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDG 210 (839)
Q Consensus 178 ~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~ 210 (839)
..+.+.+| + .--++++.+++||++|..-
T Consensus 279 ~~vSl~~~----s-~nRvLLs~~nkIyLld~~~ 306 (670)
T PF10395_consen 279 DLVSLKPP----S-PNRVLLSVNNKIYLLDLKF 306 (670)
T ss_pred cceEeecC----C-CCeEEEEcCCEEEEEeehh
Confidence 34555554 2 2246788899999999773
No 490
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=27.62 E-value=1.2e+03 Score=29.07 Aligned_cols=111 Identities=10% Similarity=0.136 Sum_probs=65.7
Q ss_pred CCCCEEEEcC-CCCeEEEEecCchhhhhhcccCCceEEEEcCCCC-c------------eeEEEecC-CCCCeEEEeecC
Q 003205 33 LSRNKVACAP-FGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV-L------------ISETVWKN-PGGRLIGMSWSE 97 (839)
Q Consensus 33 l~~~~va~sp-~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~-l------------l~ti~~~~-~~~~I~~~~fs~ 97 (839)
...--|+|.| +-+.+|++. .+|.-.||+-.|. . -++|..+. +.+....+.|..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD------------~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~ 213 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVD------------EKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS 213 (765)
T ss_pred CccceEEeccCccceEEEEe------------ccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC
Confidence 3445788887 556888885 5788888887221 1 12221111 113345788988
Q ss_pred CCeEEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEECC---eEEEEecCCeEEEEe
Q 003205 98 DQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGN---GVVCVTEANRYFCMA 158 (839)
Q Consensus 98 de~Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~---G~v~~t~~~~~~~v~ 158 (839)
+-.-++|.+...+.++|+.+......+..... ...|.+++-.+. -++++|. .+++.+.
T Consensus 214 ~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~--~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~ 274 (765)
T PF10214_consen 214 DSNRLLVCNRSKLMLIDFESNWQTEYLVTAKT--WSWILDVKRSPDNPSHVFILTS-KEIIWLD 274 (765)
T ss_pred CCCEEEEEcCCceEEEECCCCCccchhccCCC--hhheeeEEecCCccceEEEEec-CeEEEEE
Confidence 87766666666788899877653211222112 567999998876 4445555 5544444
No 491
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=27.39 E-value=4.8e+02 Score=23.75 Aligned_cols=62 Identities=11% Similarity=0.148 Sum_probs=34.0
Q ss_pred EEEeecCCCeEEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCc
Q 003205 91 IGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATM 163 (839)
Q Consensus 91 ~~~~fs~de~Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~ 163 (839)
..+.++.||.|++-..+|.+ +|...+. .+. ......+.+-++|-+++..+..-..+..++.|
T Consensus 21 ~~L~l~~dGnLvl~~~~~~~-iWss~~t-----~~~-----~~~~~~~~L~~~GNlvl~d~~~~~lW~Sf~~p 82 (114)
T PF01453_consen 21 YTLILQSDGNLVLYDSNGSV-IWSSNNT-----SGR-----GNSGCYLVLQDDGNLVLYDSSGNVLWQSFDYP 82 (114)
T ss_dssp EEEEEETTSEEEEEETTTEE-EEE--S------TTS-----S-SSEEEEEETTSEEEEEETTSEEEEESTTSS
T ss_pred ccceECCCCeEEEEcCCCCE-EEEeccc-----CCc-----cccCeEEEEeCCCCEEEEeecceEEEeecCCC
Confidence 45667777777777777666 6754211 111 00235577778877777664443344444444
No 492
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=27.12 E-value=1.7e+02 Score=33.31 Aligned_cols=161 Identities=9% Similarity=0.067 Sum_probs=76.5
Q ss_pred CCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCCCCc------cccCCCCCccccccCeE-EEEEECCeE
Q 003205 73 SAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAEL------IEPNASMGKECFEENVV-ECVFWGNGV 145 (839)
Q Consensus 73 ~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~------~~~~~g~~~~~~~~~V~-~~~~~~~G~ 145 (839)
.+|+.+.++.-- +..+-.+--+||++++-+-...++.+|.++... ..-+.|+. ...|. ....-..|+
T Consensus 208 ~q~e~i~~L~~~--~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~----~~~Vte~l~lL~Gg~ 281 (733)
T COG4590 208 TQQEIIRLLSVP--FSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDS----RHQVTEQLYLLSGGF 281 (733)
T ss_pred chhhhhhhcCCC--ccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCch----HHHHHHHHHHHhCce
Confidence 455555554433 377788889999997655555788889765332 11122210 01111 001112444
Q ss_pred EEEec--CCeEEEEecC---CCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----cccC
Q 003205 146 VCVTE--ANRYFCMADF---ATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDD 216 (839)
Q Consensus 146 v~~t~--~~~~~~v~~~---~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----~~~~ 216 (839)
-++.. +|-+-.+-+. .+|......+-++ .|..-.++.|.- +++....++.+|++-++...... ..-.
T Consensus 282 SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l--~pa~~~~l~pe~--~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~ 357 (733)
T COG4590 282 SLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKL--APAEVQFLLPET--NRKGFYSLYRNGTLQSFYSTSEKLLLFERAY 357 (733)
T ss_pred eEEEEcCCCceeeeeeeecCCCCcceeeecccc--Ccccceeecccc--ccceEEEEcCCCceeeeecccCcceehhhhh
Confidence 44332 3322222111 1222111111111 222222333311 23334455556776666544332 1122
Q ss_pred CCceEEEECCCCcEEEEeecCCeEEEEe
Q 003205 217 TLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (839)
Q Consensus 217 ~~i~~ia~Spng~~iA~~~~~g~i~i~s 244 (839)
.....+++||++..+++.. .|.+.+..
T Consensus 358 ~~~~~~~~Sp~~~~Ll~e~-~gki~~~~ 384 (733)
T COG4590 358 QAPQLVAMSPNQAYLLSED-QGKIRLAQ 384 (733)
T ss_pred cCcceeeeCcccchheeec-CCceEEEE
Confidence 3567899999999999875 45666654
No 493
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=26.94 E-value=1.2e+03 Score=28.31 Aligned_cols=101 Identities=14% Similarity=0.140 Sum_probs=57.0
Q ss_pred HHHHcCCcchHHhHHhH-cCC--ChHHHHHHHHHHHHhCCChhH-----HHHhhcc----CCCCCCchHHHHHHHhcCCH
Q 003205 700 TCIVLGNHRAAMKVKTE-FKV--SEKRWYWLKVFALATKRDWDA-----LERFSKE----KRPPIGYRPFVEACVDADEK 767 (839)
Q Consensus 700 ~l~~~~~~k~a~~l~k~-fkv--sdkr~~~~kl~ala~~~~w~~-----L~~f~~~----KKspIgyepfv~~~~~~~~~ 767 (839)
.+...|+...|...-++ ... .+...+...-.++.+.|++++ +..|-+. -..+-.+.-...++.+.|+.
T Consensus 221 ~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 300 (656)
T PRK15174 221 TLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQN 300 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Confidence 44556766554443222 222 234455556667778888875 3333221 12333444567778888888
Q ss_pred HHHHHhhccCC----C-H---HHHHHHHHHcCCHHHHHHHH
Q 003205 768 GEALKYIPKLV----D-P---RERAEAYARIGMAKEAADAA 800 (839)
Q Consensus 768 ~ea~~yI~~i~----d-~---~~r~~~~~~~~~~~~A~~~a 800 (839)
++|..++.+.- + + ......|.+.|++.+|++..
T Consensus 301 ~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 301 EKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88877766542 1 2 22345666777777777653
No 494
>PF03177 Nucleoporin_C: Non-repetitive/WGA-negative nucleoporin C-terminal; InterPro: IPR007187 This is the C-terminal half of a family of nucleoporin proteins. Nucleoporins are the main components of the nuclear pore complex in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. Two nucleoporin classes are known: one is characterised by the FG repeat and the other is represented by this family, which lacks any repeats. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ].; PDB: 3I5P_A 3I5Q_B 3I4R_B 3CQC_B 3CQG_B 3KFO_A.
Probab=26.94 E-value=1.9e+02 Score=34.67 Aligned_cols=142 Identities=17% Similarity=0.133 Sum_probs=76.2
Q ss_pred hhhhhc-cCchHHHHHHHHHcCCchHHHHHH-----HHHHhhCChhHHHHHHhcC---hhHHHHHHHHHHh---------
Q 003205 536 VPLLLS-IGEEDTALVKATESGDTDLVYLVI-----FHIWQKRPALEFFGMIQTR---PLACDLFTVYARC--------- 597 (839)
Q Consensus 536 V~lLl~-~~~~~~AL~~Ai~S~D~dLI~~vl-----l~l~~~l~~~~f~~~l~~~---p~a~~~~~~y~~~--------- 597 (839)
+-.|.+ +|.++.|++-|-+-.|....-.++ ......-..+.....+... .-+..+|--|++.
T Consensus 272 i~~l~~r~~~~~~a~~lae~~~d~~~lv~~~~~~~~~~~~~~~~~~~~~~y~~~~~d~~Fa~~Ly~wyi~~~~~~~l~~l 351 (586)
T PF03177_consen 272 IEALAKRIGCYEEAFELAEKYHDFSSLVELCPDNQLDSLEASEIKERIYQYFEKFGDELFAFFLYDWYIENGKIGKLLEL 351 (586)
T ss_dssp SCCHHHHHCHCCCHHHHHHHTS--HHHHHHH--------HHHSS-TTCHHHHCCS-SCHHHHHCHHHHHHT---T-GGGG
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhcccccccchhHHHHHHHHHHHHCCchHHHHHHHHHHHHhccchHHHhh
Confidence 344556 999999999999998888655555 1111111122222222222 2244445444433
Q ss_pred --cCHHHHHHHH---------------HhcCChhHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHhhhhhccc-
Q 003205 598 --YKHEFLKDFF---------------LSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEKAHSLFSETKE- 659 (839)
Q Consensus 598 --~~~~~L~~~~---------------~~~~~~~e~a~~~l~~~~~~~~~~~~~~~~~~~~~k~~~L~~a~~~~~~~~~- 659 (839)
.....|..|+ ...++|.++|......|.+..+.. +.....|+..+-.+........+
T Consensus 352 ~~~~~~~L~~fL~~~~~~~~~L~Wi~~~~~~~y~~AA~~L~~lA~~~~~~~-----~~~~~~r~~ls~~kL~~~a~~~~~ 426 (586)
T PF03177_consen 352 LEIYSPFLERFLRRNPKKYPDLLWIYYIRNGQYSKAAETLLQLAQREADSV-----SFPLEKRIELSLAKLAALASSESD 426 (586)
T ss_dssp GG--GCCCHHHHHC--T-HCCCHHCHHHHTTSHHHHHHHHHHHHHH-HSSH-----SS-HHHHHHHHHHHHHHHHS--HH
T ss_pred cccCCHHHHHHHHHHHhhcCCcchHHHHhccCHHHHHHHHHHHHhhhcccc-----chhhHHHHHHHHHHHHHhhccccC
Confidence 1223333444 447789999999888877654320 00012566666555555543321
Q ss_pred ---cchHHHHHHHHHHHHHHHHHHHh
Q 003205 660 ---HTFESKAAEEHAKLLRIQHELEV 682 (839)
Q Consensus 660 ---~~f~~~~~~~~~~Ll~~Q~~Le~ 682 (839)
..-..+.+++.+.++++|..|-.
T Consensus 427 ~~~~~~~l~~i~~~L~v~~iQ~~l~~ 452 (586)
T PF03177_consen 427 SPEDQELLEEIEDELDVIRIQERLYE 452 (586)
T ss_dssp -H-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12234568999999999999887
No 495
>PRK13613 lipoprotein LpqB; Provisional
Probab=26.76 E-value=1.2e+03 Score=28.15 Aligned_cols=184 Identities=17% Similarity=0.126 Sum_probs=87.5
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC--CCCc-e-eEEEecCCCCCeEEEeecCCCeEEEEEe--C
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS--AGVL-I-SETVWKNPGGRLIGMSWSEDQTLICVVQ--D 107 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~--~G~l-l-~ti~~~~~~~~I~~~~fs~de~Lv~v~~--d 107 (839)
.....|+|++|+.+|..... ...+.+-.. .|.. + .+-.... ..+..=.|.+++-+-++.. +
T Consensus 364 ~~~s~avS~~g~~~A~v~~~-----------~~~l~vg~~~~~~~~~~~~~~~~~~--~~Lt~PS~d~~g~vWtvd~~~~ 430 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISAD-----------GDSVYVGSLTPGASIGVHSWGVTAD--GRLTSPSWDGRGDLWVVDRDPA 430 (599)
T ss_pred CccceEEcCCCceEEEEcCC-----------CcEEEEeccCCCCccccccceeecc--CcccCCcCcCCCCEEEecCCCC
Confidence 44578999999999988532 223444321 2220 0 0000111 3344445555555444422 1
Q ss_pred C--eEEEEeCCCCccccCCCCCcccccc-CeEEEEEECCeEEEEe--c---CCeEE--EE-ecCCCceEEEcCCC-----
Q 003205 108 G--TVYRYNIHAELIEPNASMGKECFEE-NVVECVFWGNGVVCVT--E---ANRYF--CM-ADFATMKVCELARP----- 171 (839)
Q Consensus 108 G--tv~l~~~~G~~~~~~~g~~~~~~~~-~V~~~~~~~~G~v~~t--~---~~~~~--~v-~~~~~~~~~~l~~~----- 171 (839)
| .++++.-.|+..+.... . +.. .|.+.+++++|.=++. . .++++ .| .+-.+ . ..|.++
T Consensus 431 ~~~vl~v~~~~G~~~~V~~~-~---l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G-~-~~l~~~~~l~~ 504 (599)
T PRK13613 431 DPRLLWLLQGDGEPVEVRTP-E---LDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKA-V-VSVEEFRSLAP 504 (599)
T ss_pred CceEEEEEcCCCcEEEeecc-c---cCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCC-c-EEeeccEEecc
Confidence 1 25555445554221111 1 122 5899999998875443 2 13332 22 22222 1 333221
Q ss_pred CCCCCCceEEEeCCCCCCCCcEEEEEE---eCCeEEEEecCCcc-----cccCCCceEEEECCCCc-EEEEeecCCeEEE
Q 003205 172 EVEELPHCVAVIEPKYTMTGSVEVLIG---TDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGN-FVACFTHDGRLVV 242 (839)
Q Consensus 172 ~~~~~~~~w~vi~~~~S~~~~~~v~~s---~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~-~iA~~~~~g~i~i 242 (839)
.+ ..+. .-.+..++.+.|+.. .+..++..+.+|.. .....++..|+.+.+-. .+...+.++.|+.
T Consensus 505 ~l-~~v~-----~~~W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v~~ 578 (599)
T PRK13613 505 EL-EDVT-----DMSWAGDSQLVVLGREEGGVQQARYVQVDGSTPPASAPAAVTGVESITASEDERLPLVAGTSEDGIVR 578 (599)
T ss_pred CC-Cccc-----eeEEcCCCEEEEEeccCCCCcceEEEecCCcCcccccccCCCCeeEEEecCCCCceEEEEecCCCeEE
Confidence 12 1121 112223555555432 14577888888765 23455677788886654 3333255555543
No 496
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.68 E-value=2.6e+02 Score=35.64 Aligned_cols=61 Identities=13% Similarity=0.224 Sum_probs=42.5
Q ss_pred CCceEEEECCCCcEEEEeecCCeEEEEecCCCC--ccccccCCCCCCCCceeeecCceEEEEe
Q 003205 217 TLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSS--PVIDESCESALPPEQIAWCGMDSVLLYW 277 (839)
Q Consensus 217 ~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~--~l~e~~~~~~~~p~~~~WcG~d~vv~~~ 277 (839)
...+.++.||.|+.++.+-.+|++.-+...+.- .+-+-.......+..+.|.+.---++.|
T Consensus 199 ~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 199 NSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred cceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 446899999999999999999998888766542 2222222224677899999764444444
No 497
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=26.48 E-value=1.2e+03 Score=27.99 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=10.9
Q ss_pred hHHHHHHHhcCCHHHHHHhhcc
Q 003205 755 RPFVEACVDADEKGEALKYIPK 776 (839)
Q Consensus 755 epfv~~~~~~~~~~ea~~yI~~ 776 (839)
.-...++...|+.++|.++..+
T Consensus 546 ~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 546 ATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHH
Confidence 3344445555555555555444
No 498
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=26.28 E-value=2.1e+02 Score=34.56 Aligned_cols=34 Identities=6% Similarity=0.010 Sum_probs=22.1
Q ss_pred cHHHHHhCChHHHHHHHHHcCChHHHHHHHHHhC
Q 003205 431 SIQQYKSLTASVLIGRLINANCHLLALRISEYLG 464 (839)
Q Consensus 431 T~~Q~~~l~~~~li~rL~~r~~~~lA~~I~~~l~ 464 (839)
|..|+..-....+-+.-+.+++|.|---|...+|
T Consensus 497 ~~~~~~l~~L~~i~~q~v~s~~yClepClr~l~g 530 (1081)
T KOG0309|consen 497 TMKAKLLKILKDIALQKVKSGQYCLEPCLRQLVG 530 (1081)
T ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHhc
Confidence 3333333345566677788888888777777766
No 499
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=26.27 E-value=8.8e+02 Score=26.49 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=19.3
Q ss_pred CCCeEEEeec-CCCeEEEEEeCCe
Q 003205 87 GGRLIGMSWS-EDQTLICVVQDGT 109 (839)
Q Consensus 87 ~~~I~~~~fs-~de~Lv~v~~dGt 109 (839)
.|.+-++.|. .++.++.++++|.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~ 42 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGP 42 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCC
Confidence 4778899999 4677899999998
No 500
>PF12110 Nup96: Nuclear protein 96; InterPro: IPR021967 Nup96 (often known by the name of its yeast homologue Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the nuclear pore complex between the inner and outer nuclear membranes. Nup96 is predicted to be an alpha helical solenoid. The interaction between Nup96 and Sec13 is the point of curvature in the heptameric complex [], [].; PDB: 3BG1_C 3BG0_F 3IKO_B.
Probab=26.18 E-value=2.3e+02 Score=30.66 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHHhcCChhHHHHHH
Q 003205 779 DPRERAEAYARIGMAKEAADAASQAKDGELLGRLKLTFAQNAAASSIFD 827 (839)
Q Consensus 779 d~~~r~~~~~~~~~~~~A~~~a~~~kd~~~L~~i~~~~~~~~~~~~~i~ 827 (839)
|+.+++=.++-.|+..+|.+.|.+.||.. |.-+..++.+++.+...+.
T Consensus 1 ~~le~if~~L~~~~i~~A~~~A~~~~n~~-LA~Llsq~~~~~~~r~~~~ 48 (290)
T PF12110_consen 1 SPLEKIFLLLSGHDIEEACELAIDSGNPH-LATLLSQIGGDPAVRSLAK 48 (290)
T ss_dssp -HHHHHHHHHHTT-HHHHHHHHHHTT-HH-HHHHHHHTS--HHHHHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHCCCch-HHHHHHHhcCCHHHHHHHH
Confidence 47889999999999999999999999964 4445556655554444333
Done!