Query 003205
Match_columns 839
No_of_seqs 190 out of 364
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 17:06:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003205.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003205hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 99.9 2.5E-20 8.7E-25 218.2 28.1 282 34-344 264-567 (577)
2 2ymu_A WD-40 repeat protein; u 99.9 3E-20 1E-24 217.5 27.8 283 34-345 223-527 (577)
3 1got_B GT-beta; complex (GTP-b 99.8 1.5E-18 5.2E-23 190.2 31.0 253 34-312 57-340 (340)
4 1vyh_C Platelet-activating fac 99.8 8.8E-19 3E-23 197.5 29.3 253 34-313 110-409 (410)
5 3fm0_A Protein CIAO1; WDR39,SG 99.8 6.7E-19 2.3E-23 193.5 24.0 264 34-323 18-343 (345)
6 2ynn_A Coatomer subunit beta'; 99.8 2.1E-18 7.2E-23 186.0 25.3 251 34-339 15-283 (304)
7 3ow8_A WD repeat-containing pr 99.8 3.3E-18 1.1E-22 186.3 26.8 254 33-313 33-319 (321)
8 1nr0_A Actin interacting prote 99.8 3.1E-18 1.1E-22 203.3 27.7 273 34-335 20-376 (611)
9 3frx_A Guanine nucleotide-bind 99.8 9E-18 3.1E-22 182.4 29.1 256 34-314 19-316 (319)
10 2xzm_R RACK1; ribosome, transl 99.8 1.1E-17 3.8E-22 183.4 29.3 259 34-314 23-339 (343)
11 4ery_A WD repeat-containing pr 99.8 5.3E-17 1.8E-21 174.8 31.0 255 34-314 25-311 (312)
12 4gqb_B Methylosome protein 50; 99.8 1.5E-17 5E-22 183.3 27.0 263 35-318 33-334 (344)
13 4g56_B MGC81050 protein; prote 99.8 2.9E-17 9.9E-22 181.6 28.3 260 34-314 44-342 (357)
14 1nr0_A Actin interacting prote 99.8 1.1E-17 3.9E-22 198.5 26.7 288 34-345 61-510 (611)
15 3iz6_a 40S ribosomal protein R 99.8 6.3E-18 2.2E-22 188.3 23.1 262 33-316 67-376 (380)
16 2pbi_B Guanine nucleotide-bind 99.8 3.5E-17 1.2E-21 180.6 28.0 256 33-312 65-354 (354)
17 3zwl_B Eukaryotic translation 99.8 6.9E-17 2.4E-21 176.2 27.1 270 33-324 33-355 (369)
18 1erj_A Transcriptional repress 99.8 1E-16 3.6E-21 179.3 28.8 254 34-314 66-388 (393)
19 1vyh_C Platelet-activating fac 99.8 2.8E-17 9.7E-22 185.1 23.5 260 69-343 92-397 (410)
20 3ow8_A WD repeat-containing pr 99.8 1.4E-17 4.7E-22 181.4 20.2 256 73-343 20-307 (321)
21 1r5m_A SIR4-interacting protei 99.8 5.6E-17 1.9E-21 180.6 24.2 286 34-342 47-410 (425)
22 4h5i_A Guanine nucleotide-exch 99.7 2.4E-17 8.2E-22 182.9 20.1 190 35-245 136-341 (365)
23 3dm0_A Maltose-binding peripla 99.7 2.3E-16 7.7E-21 190.0 29.4 257 34-314 384-692 (694)
24 3v7d_B Cell division control p 99.7 3.2E-16 1.1E-20 178.4 28.7 271 38-334 126-441 (464)
25 4aow_A Guanine nucleotide-bind 99.7 6.8E-16 2.3E-20 166.9 29.3 263 26-316 34-338 (340)
26 4e54_B DNA damage-binding prot 99.7 1.5E-16 5.2E-21 180.4 24.9 261 32-316 119-431 (435)
27 2ynn_A Coatomer subunit beta'; 99.7 3.3E-16 1.1E-20 168.7 26.3 201 34-257 57-269 (304)
28 2hes_X YDR267CP; beta-propelle 99.7 1.7E-16 5.7E-21 173.2 23.8 252 34-314 16-327 (330)
29 3ei3_B DNA damage-binding prot 99.7 8.3E-16 2.8E-20 170.3 29.7 258 33-314 74-381 (383)
30 2j04_B YDR362CP, TAU91; beta p 99.7 5.1E-17 1.8E-21 189.1 20.3 255 35-314 210-516 (524)
31 1k8k_C P40, ARP2/3 complex 41 99.7 1.8E-16 6.3E-21 173.7 23.5 209 34-269 10-254 (372)
32 3vl1_A 26S proteasome regulato 99.7 1.2E-15 4.1E-20 170.7 30.5 259 37-314 102-418 (420)
33 1got_B GT-beta; complex (GTP-b 99.7 4.2E-16 1.4E-20 170.7 25.2 209 35-270 100-323 (340)
34 3dwl_C Actin-related protein 2 99.7 2.5E-17 8.4E-22 181.9 15.4 209 34-268 13-260 (377)
35 3i2n_A WD repeat-containing pr 99.7 7.1E-16 2.4E-20 167.8 26.6 270 33-318 19-356 (357)
36 4gqb_B Methylosome protein 50; 99.7 5.1E-16 1.8E-20 170.9 25.4 208 35-269 85-309 (344)
37 2j04_A TAU60, YPL007P, hypothe 99.7 6.2E-18 2.1E-22 194.1 9.4 183 34-246 87-296 (588)
38 2pm7_B Protein transport prote 99.7 1.5E-15 5E-20 163.0 27.2 230 34-314 11-284 (297)
39 1gxr_A ESG1, transducin-like e 99.7 2.5E-16 8.6E-21 169.7 21.4 277 35-341 12-321 (337)
40 1gxr_A ESG1, transducin-like e 99.7 8.2E-15 2.8E-19 157.8 32.3 250 33-312 52-334 (337)
41 2j04_A TAU60, YPL007P, hypothe 99.7 1.2E-16 4E-21 183.5 18.5 244 33-314 16-296 (588)
42 4ery_A WD repeat-containing pr 99.7 9.8E-16 3.3E-20 164.8 24.7 257 73-343 11-296 (312)
43 1r5m_A SIR4-interacting protei 99.7 1E-15 3.6E-20 170.3 25.4 253 34-314 110-424 (425)
44 3sfz_A APAF-1, apoptotic pepti 99.7 7.2E-16 2.5E-20 197.4 26.4 285 34-345 617-1022(1249)
45 3frx_A Guanine nucleotide-bind 99.7 2E-15 7E-20 163.7 25.6 190 34-250 67-270 (319)
46 4a11_B DNA excision repair pro 99.7 1E-14 3.5E-19 161.5 31.7 266 33-325 44-375 (408)
47 3odt_A Protein DOA1; ubiquitin 99.7 8.5E-15 2.9E-19 156.1 29.9 258 34-322 20-303 (313)
48 2pbi_B Guanine nucleotide-bind 99.7 1.1E-15 3.8E-20 168.6 23.4 255 75-344 54-344 (354)
49 4ggc_A P55CDC, cell division c 99.7 2.1E-14 7.1E-19 153.6 32.7 253 35-315 28-315 (318)
50 1pgu_A Actin interacting prote 99.7 4E-15 1.4E-19 174.6 28.9 271 34-334 20-347 (615)
51 3dw8_B Serine/threonine-protei 99.7 5.1E-15 1.8E-19 166.8 28.4 260 34-314 30-445 (447)
52 4h5i_A Guanine nucleotide-exch 99.7 1.1E-15 3.6E-20 169.6 22.3 239 36-313 75-341 (365)
53 2pm9_A Protein WEB1, protein t 99.7 6.3E-16 2.1E-20 172.4 20.5 270 36-320 16-342 (416)
54 1erj_A Transcriptional repress 99.7 8.6E-16 2.9E-20 171.8 21.6 210 35-268 126-361 (393)
55 3mkq_A Coatomer beta'-subunit; 99.7 1E-15 3.5E-20 186.7 23.5 252 34-338 15-282 (814)
56 3bg1_A Protein SEC13 homolog; 99.7 1.1E-15 3.8E-20 165.6 21.2 244 34-325 15-306 (316)
57 4gga_A P55CDC, cell division c 99.7 2E-14 6.9E-19 161.9 32.3 256 32-318 105-398 (420)
58 2xzm_R RACK1; ribosome, transl 99.7 9.8E-15 3.4E-19 159.8 27.5 188 34-249 78-287 (343)
59 2pm9_A Protein WEB1, protein t 99.7 1.5E-15 5E-20 169.4 20.8 258 34-314 69-413 (416)
60 4aez_A CDC20, WD repeat-contai 99.7 2.6E-14 8.7E-19 160.0 30.7 242 64-322 111-387 (401)
61 3f3f_A Nucleoporin SEH1; struc 99.7 1E-14 3.5E-19 156.8 26.4 266 34-322 13-344 (351)
62 3fm0_A Protein CIAO1; WDR39,SG 99.7 1.7E-15 5.7E-20 166.4 20.2 253 76-343 6-321 (345)
63 1yfq_A Cell cycle arrest prote 99.7 3.8E-15 1.3E-19 161.4 22.4 261 34-343 13-309 (342)
64 3jrp_A Fusion protein of prote 99.6 9.8E-15 3.4E-19 159.9 24.2 234 34-315 13-287 (379)
65 4g56_B MGC81050 protein; prote 99.6 4.4E-15 1.5E-19 164.0 20.7 208 35-268 97-320 (357)
66 2hes_X YDR267CP; beta-propelle 99.6 5E-15 1.7E-19 161.5 20.4 186 34-246 60-279 (330)
67 3sfz_A APAF-1, apoptotic pepti 99.6 6.1E-15 2.1E-19 188.9 24.3 253 34-313 963-1247(1249)
68 1sq9_A Antiviral protein SKI8; 99.6 2.6E-14 8.8E-19 158.4 26.3 261 33-315 17-395 (397)
69 2ovr_B FBW7, F-BOX/WD repeat p 99.6 4.8E-14 1.6E-18 159.8 28.3 273 37-342 122-423 (445)
70 3k26_A Polycomb protein EED; W 99.6 3.7E-14 1.3E-18 154.5 26.3 259 33-314 19-365 (366)
71 3mkq_A Coatomer beta'-subunit; 99.6 6.3E-14 2.2E-18 170.8 29.2 248 33-306 56-322 (814)
72 3iz6_a 40S ribosomal protein R 99.6 1.1E-14 3.6E-19 162.1 20.5 269 66-344 46-362 (380)
73 3vl1_A 26S proteasome regulato 99.6 3E-14 1E-18 159.3 23.3 253 36-315 60-365 (420)
74 3gre_A Serine/threonine-protei 99.6 7.1E-15 2.4E-19 165.8 17.6 258 39-325 34-369 (437)
75 2j04_B YDR362CP, TAU91; beta p 99.6 1.2E-14 4.1E-19 169.1 19.7 260 63-338 180-495 (524)
76 2aq5_A Coronin-1A; WD40 repeat 99.6 5.5E-14 1.9E-18 157.1 23.3 257 37-342 39-329 (402)
77 3gre_A Serine/threonine-protei 99.6 1.6E-14 5.5E-19 162.9 19.2 203 34-255 65-300 (437)
78 1p22_A F-BOX/WD-repeat protein 99.6 1.8E-13 6.1E-18 154.8 27.1 253 36-321 135-420 (435)
79 3mmy_A MRNA export factor; mRN 99.6 4.5E-14 1.5E-18 153.7 21.0 267 33-345 40-334 (368)
80 1pgu_A Actin interacting prote 99.6 8.5E-14 2.9E-18 163.3 24.8 270 35-342 67-387 (615)
81 2vdu_B TRNA (guanine-N(7)-)-me 99.6 4E-14 1.4E-18 161.0 19.5 199 34-255 6-279 (450)
82 3ei3_B DNA damage-binding prot 99.6 1.3E-13 4.3E-18 152.6 22.9 255 74-343 62-369 (383)
83 3jro_A Fusion protein of prote 99.6 6.6E-14 2.3E-18 170.3 21.8 235 34-315 11-285 (753)
84 3dm0_A Maltose-binding peripla 99.6 2.6E-13 8.7E-18 163.3 26.3 195 34-255 432-640 (694)
85 3mmy_A MRNA export factor; mRN 99.6 5.6E-13 1.9E-17 145.0 26.3 213 34-270 88-326 (368)
86 2w18_A PALB2, fancn, partner a 99.6 7E-14 2.4E-18 151.4 18.1 202 34-244 113-354 (356)
87 2oaj_A Protein SNI1; WD40 repe 99.5 4.2E-13 1.4E-17 166.3 26.0 195 33-251 18-246 (902)
88 3zwl_B Eukaryotic translation 99.5 3.5E-13 1.2E-17 146.7 22.4 257 73-345 18-334 (369)
89 3lrv_A PRE-mRNA-splicing facto 99.5 2.3E-13 8E-18 148.7 20.4 247 39-314 43-332 (343)
90 2pm7_B Protein transport prote 99.5 6.6E-13 2.2E-17 142.2 22.1 188 34-247 55-285 (297)
91 1k8k_C P40, ARP2/3 complex 41 99.5 2.9E-13 1E-17 148.1 18.9 221 81-315 4-274 (372)
92 1yfq_A Cell cycle arrest prote 99.5 1.9E-12 6.3E-17 140.1 24.9 195 34-255 58-290 (342)
93 2xyi_A Probable histone-bindin 99.5 6.4E-13 2.2E-17 150.3 21.9 242 34-316 130-411 (430)
94 3dwl_C Actin-related protein 2 99.5 3.6E-13 1.2E-17 148.3 19.3 189 33-246 56-280 (377)
95 3bg1_A Protein SEC13 homolog; 99.5 3.7E-13 1.3E-17 145.7 18.2 192 34-248 59-294 (316)
96 3i2n_A WD repeat-containing pr 99.5 8.1E-13 2.8E-17 143.5 20.6 193 34-248 67-292 (357)
97 3odt_A Protein DOA1; ubiquitin 99.5 5.7E-13 1.9E-17 141.9 19.0 245 75-340 8-280 (313)
98 4e54_B DNA damage-binding prot 99.5 5E-13 1.7E-17 151.3 19.7 211 76-323 110-335 (435)
99 3k26_A Polycomb protein EED; W 99.5 3.2E-13 1.1E-17 147.1 17.3 211 34-270 71-346 (366)
100 4aow_A Guanine nucleotide-bind 99.5 8.3E-13 2.8E-17 142.5 20.4 255 74-343 27-323 (340)
101 1sq9_A Antiviral protein SKI8; 99.5 5.5E-13 1.9E-17 147.6 19.3 232 78-323 9-330 (397)
102 2aq5_A Coronin-1A; WD40 repeat 99.5 1.7E-12 5.9E-17 144.8 23.4 213 34-270 83-324 (402)
103 4aez_A CDC20, WD repeat-contai 99.5 1.7E-12 5.7E-17 145.2 23.2 209 34-270 136-360 (401)
104 3f3f_A Nucleoporin SEH1; struc 99.5 2E-12 7E-17 138.7 22.5 195 34-251 59-341 (351)
105 3jrp_A Fusion protein of prote 99.5 4.7E-13 1.6E-17 146.4 17.0 158 75-246 1-190 (379)
106 3vu4_A KMHSV2; beta-propeller 99.5 5.8E-12 2E-16 138.7 25.3 189 33-246 20-270 (355)
107 2vdu_B TRNA (guanine-N(7)-)-me 99.5 9.6E-12 3.3E-16 141.3 26.7 209 35-269 105-364 (450)
108 2hqs_A Protein TOLB; TOLB, PAL 99.4 9.2E-12 3.1E-16 140.4 25.9 182 44-247 143-344 (415)
109 4gq1_A NUP37; propeller, trans 99.4 2.9E-12 9.9E-17 143.2 21.0 196 34-248 138-391 (393)
110 1l0q_A Surface layer protein; 99.4 1.7E-11 5.7E-16 135.7 26.4 236 35-325 34-285 (391)
111 3v7d_B Cell division control p 99.4 3.8E-11 1.3E-15 136.2 29.8 245 34-311 164-458 (464)
112 4gq1_A NUP37; propeller, trans 99.4 1.4E-12 4.7E-17 145.8 16.6 230 37-314 94-388 (393)
113 2oaj_A Protein SNI1; WD40 repe 99.4 4.3E-12 1.5E-16 157.2 22.4 148 88-245 436-659 (902)
114 4a11_B DNA excision repair pro 99.4 8.6E-12 2.9E-16 137.8 22.3 270 64-345 21-353 (408)
115 3dw8_B Serine/threonine-protei 99.4 1.1E-11 3.9E-16 139.3 23.0 192 33-251 94-377 (447)
116 2hqs_A Protein TOLB; TOLB, PAL 99.4 2.6E-11 8.9E-16 136.7 25.5 209 34-268 180-406 (415)
117 3bws_A Protein LP49; two-domai 99.4 2.5E-11 8.5E-16 136.2 25.2 249 36-314 126-431 (433)
118 2ovr_B FBW7, F-BOX/WD repeat p 99.4 1E-10 3.6E-15 132.2 29.5 231 64-314 177-441 (445)
119 4gga_A P55CDC, cell division c 99.4 9.1E-12 3.1E-16 140.1 20.6 240 90-345 108-383 (420)
120 4ggc_A P55CDC, cell division c 99.4 1.6E-11 5.5E-16 131.0 20.6 240 91-345 29-303 (318)
121 2ecf_A Dipeptidyl peptidase IV 99.3 4.6E-11 1.6E-15 144.3 24.1 295 34-342 38-440 (741)
122 1p22_A F-BOX/WD-repeat protein 99.3 1.8E-10 6.1E-15 130.0 26.6 200 36-268 175-394 (435)
123 3lrv_A PRE-mRNA-splicing facto 99.3 7.4E-11 2.5E-15 128.7 21.9 172 63-246 92-291 (343)
124 2xyi_A Probable histone-bindin 99.3 1.1E-10 3.8E-15 131.8 22.4 187 34-246 183-409 (430)
125 3jro_A Fusion protein of prote 99.3 2.5E-11 8.7E-16 147.5 18.2 187 34-247 55-285 (753)
126 3bws_A Protein LP49; two-domai 99.3 2.2E-10 7.4E-15 128.5 23.7 206 37-271 174-412 (433)
127 3o4h_A Acylamino-acid-releasin 99.3 6.8E-11 2.3E-15 138.9 19.8 189 32-250 21-230 (582)
128 2ojh_A Uncharacterized protein 99.2 1.8E-10 6.2E-15 120.6 18.6 169 63-246 19-203 (297)
129 3vu4_A KMHSV2; beta-propeller 99.2 5.4E-10 1.8E-14 122.9 21.5 187 35-245 61-334 (355)
130 1l0q_A Surface layer protein; 99.2 1.1E-09 3.7E-14 121.0 23.5 197 34-257 75-285 (391)
131 2z3z_A Dipeptidyl aminopeptida 99.2 1.2E-09 4.1E-14 131.1 25.0 263 34-317 83-437 (706)
132 1xfd_A DIP, dipeptidyl aminope 99.2 3.7E-10 1.3E-14 135.8 18.7 194 35-250 19-292 (723)
133 1k32_A Tricorn protease; prote 99.2 1.8E-09 6E-14 136.1 25.3 281 36-342 18-436 (1045)
134 3u4y_A Uncharacterized protein 99.2 1.3E-08 4.3E-13 109.5 28.6 234 64-316 18-305 (331)
135 1k32_A Tricorn protease; prote 99.1 1E-09 3.5E-14 138.2 21.3 208 35-270 247-482 (1045)
136 2ecf_A Dipeptidyl peptidase IV 99.1 1.9E-09 6.6E-14 130.0 22.7 191 35-246 111-366 (741)
137 1pby_B Quinohemoprotein amine 99.1 3.1E-09 1.1E-13 114.0 21.5 234 35-325 36-320 (337)
138 1nir_A Nitrite reductase; hemo 99.1 1.3E-08 4.5E-13 118.7 27.0 266 35-325 181-524 (543)
139 1z68_A Fibroblast activation p 99.1 1.7E-09 5.7E-14 130.2 20.1 187 36-244 19-284 (719)
140 3vgz_A Uncharacterized protein 99.1 1E-08 3.4E-13 111.0 24.2 214 35-270 91-324 (353)
141 2ojh_A Uncharacterized protein 99.1 8.1E-09 2.8E-13 107.9 22.7 187 34-248 43-259 (297)
142 1nir_A Nitrite reductase; hemo 99.1 4.3E-09 1.5E-13 122.8 22.1 280 39-342 144-494 (543)
143 1xfd_A DIP, dipeptidyl aminope 99.0 7.4E-10 2.5E-14 133.1 13.3 143 88-237 17-193 (723)
144 3vgz_A Uncharacterized protein 99.0 2.5E-08 8.4E-13 107.9 24.0 205 35-255 43-270 (353)
145 2w18_A PALB2, fancn, partner a 99.0 1.2E-08 4.2E-13 110.4 19.9 187 89-312 113-354 (356)
146 1ri6_A Putative isomerase YBHE 99.0 2.5E-08 8.5E-13 107.1 21.5 216 34-271 85-334 (343)
147 1q7f_A NHL, brain tumor CG1071 98.9 2.7E-07 9.1E-12 97.3 26.8 196 35-254 32-244 (286)
148 2z3z_A Dipeptidyl aminopeptida 98.9 3.7E-09 1.3E-13 126.9 13.7 152 88-248 82-294 (706)
149 1ri6_A Putative isomerase YBHE 98.9 3E-08 1E-12 106.4 19.4 186 34-246 39-261 (343)
150 3pe7_A Oligogalacturonate lyas 98.9 5E-08 1.7E-12 107.4 21.4 189 38-249 41-275 (388)
151 3hfq_A Uncharacterized protein 98.9 7.1E-08 2.4E-12 104.7 21.9 196 34-247 87-317 (347)
152 3hfq_A Uncharacterized protein 98.9 4.5E-08 1.5E-12 106.3 20.0 194 35-246 42-270 (347)
153 1jmx_B Amine dehydrogenase; ox 98.9 7E-08 2.4E-12 104.0 21.2 202 34-255 44-333 (349)
154 1jmx_B Amine dehydrogenase; ox 98.9 6.3E-08 2.2E-12 104.3 18.9 102 37-151 4-110 (349)
155 3o4h_A Acylamino-acid-releasin 98.8 2.9E-08 9.9E-13 116.4 15.9 187 37-246 114-314 (582)
156 1z68_A Fibroblast activation p 98.8 1.5E-07 5E-12 113.2 22.3 203 35-246 62-345 (719)
157 4a5s_A Dipeptidyl peptidase 4 98.8 6.5E-08 2.2E-12 117.1 19.3 196 34-249 18-296 (740)
158 3no2_A Uncharacterized protein 98.8 2.4E-07 8.4E-12 98.1 21.3 184 64-256 13-204 (276)
159 3e5z_A Putative gluconolactona 98.8 4.7E-07 1.6E-11 96.1 23.7 205 36-270 31-266 (296)
160 4a5s_A Dipeptidyl peptidase 4 98.8 3.4E-07 1.2E-11 110.8 23.8 200 37-247 66-353 (740)
161 3u4y_A Uncharacterized protein 98.8 1E-06 3.5E-11 94.5 24.8 187 37-250 44-255 (331)
162 2gop_A Trilobed protease; beta 98.7 2.8E-07 9.7E-12 99.7 19.5 177 35-246 61-290 (347)
163 3azo_A Aminopeptidase; POP fam 98.7 1.4E-07 4.9E-12 112.0 18.3 180 41-246 87-322 (662)
164 1q7f_A NHL, brain tumor CG1071 98.7 9.6E-07 3.3E-11 92.9 22.6 169 65-246 99-279 (286)
165 3scy_A Hypothetical bacterial 98.7 1.4E-06 4.6E-11 95.1 24.6 192 36-246 53-290 (361)
166 1pby_B Quinohemoprotein amine 98.7 5.2E-08 1.8E-12 104.3 12.1 206 34-257 83-320 (337)
167 2oit_A Nucleoporin 214KDA; NH2 98.7 1.4E-07 4.7E-12 106.8 15.0 193 66-277 23-258 (434)
168 1jof_A Carboxy-CIS,CIS-muconat 98.7 1.2E-06 4E-11 96.3 22.0 187 35-246 42-290 (365)
169 1rwi_B Serine/threonine-protei 98.7 6E-06 2E-10 85.7 26.0 190 34-246 25-221 (270)
170 2oit_A Nucleoporin 214KDA; NH2 98.6 1.6E-07 5.4E-12 106.3 13.8 184 34-245 38-276 (434)
171 3scy_A Hypothetical bacterial 98.6 2.7E-06 9.1E-11 92.8 22.0 174 64-247 118-337 (361)
172 2z2n_A Virginiamycin B lyase; 98.6 5.1E-05 1.7E-09 79.4 30.3 229 34-288 16-255 (299)
173 3pe7_A Oligogalacturonate lyas 98.6 6.8E-07 2.3E-11 98.2 16.0 184 37-246 85-328 (388)
174 3azo_A Aminopeptidase; POP fam 98.6 2.3E-06 8E-11 101.5 21.5 187 35-246 26-273 (662)
175 3fvz_A Peptidyl-glycine alpha- 98.5 2E-06 6.9E-11 93.1 18.6 193 36-246 94-321 (329)
176 2dg1_A DRP35, lactonase; beta 98.5 1.6E-05 5.4E-10 85.4 25.1 194 36-255 48-270 (333)
177 3fvz_A Peptidyl-glycine alpha- 98.5 5.6E-06 1.9E-10 89.5 21.5 190 35-232 26-255 (329)
178 1jof_A Carboxy-CIS,CIS-muconat 98.5 1.4E-06 4.8E-11 95.6 16.7 179 64-248 117-342 (365)
179 3c5m_A Oligogalacturonate lyas 98.5 1.6E-06 5.5E-11 95.1 16.6 182 38-246 86-328 (396)
180 3c5m_A Oligogalacturonate lyas 98.5 2.7E-06 9.2E-11 93.3 18.2 190 35-248 38-274 (396)
181 3e5z_A Putative gluconolactona 98.4 6.8E-05 2.3E-09 79.2 26.3 202 73-289 15-247 (296)
182 2xdw_A Prolyl endopeptidase; a 98.4 1.4E-05 4.9E-10 95.9 21.7 200 36-255 128-376 (710)
183 2qc5_A Streptogramin B lactona 98.3 0.00069 2.4E-08 70.6 31.6 234 34-293 21-265 (300)
184 2oiz_A Aromatic amine dehydrog 98.3 2.1E-05 7E-10 86.5 19.4 246 37-324 54-345 (361)
185 2bkl_A Prolyl endopeptidase; m 98.3 1.7E-05 5.9E-10 95.0 20.2 185 35-246 123-348 (695)
186 2z2n_A Virginiamycin B lyase; 98.3 0.0003 1E-08 73.4 27.6 187 36-246 60-254 (299)
187 1rwi_B Serine/threonine-protei 98.2 7.2E-05 2.5E-09 77.4 20.7 186 35-246 69-263 (270)
188 2gop_A Trilobed protease; beta 98.2 3.5E-05 1.2E-09 83.0 18.2 171 43-244 23-250 (347)
189 2dg1_A DRP35, lactonase; beta 98.2 7.1E-05 2.4E-09 80.2 20.0 168 64-246 25-212 (333)
190 3g4e_A Regucalcin; six bladed 98.2 0.00018 6.2E-09 76.3 22.8 208 37-271 17-252 (297)
191 2ghs_A AGR_C_1268P; regucalcin 98.2 0.00015 5.2E-09 78.1 22.5 205 37-270 53-281 (326)
192 3dsm_A Uncharacterized protein 98.2 0.00022 7.4E-09 77.0 23.5 243 64-323 15-309 (328)
193 3no2_A Uncharacterized protein 98.1 2.6E-05 8.9E-10 82.4 15.4 178 96-287 3-194 (276)
194 2qc5_A Streptogramin B lactona 98.1 0.0011 3.7E-08 69.1 27.9 171 64-246 81-259 (300)
195 2mad_H Methylamine dehydrogena 98.1 0.00077 2.6E-08 74.3 27.1 160 37-211 70-244 (373)
196 1xip_A Nucleoporin NUP159; bet 98.1 8E-05 2.7E-09 82.4 18.2 166 35-237 40-234 (388)
197 1yr2_A Prolyl oligopeptidase; 98.0 7.9E-05 2.7E-09 90.0 18.9 188 36-244 166-390 (741)
198 1pjx_A Dfpase, DIISOPROPYLFLUO 98.0 0.0014 4.7E-08 69.1 25.9 198 36-246 21-255 (314)
199 2xdw_A Prolyl endopeptidase; a 97.9 0.00021 7.3E-09 85.7 19.6 219 40-277 79-353 (710)
200 3iuj_A Prolyl endopeptidase; h 97.9 0.0004 1.4E-08 83.1 21.7 186 36-246 132-358 (693)
201 3dsm_A Uncharacterized protein 97.9 0.00045 1.5E-08 74.5 19.3 184 64-267 103-319 (328)
202 3sjl_D Methylamine dehydrogena 97.9 0.00079 2.7E-08 74.2 21.2 244 37-324 82-372 (386)
203 3hrp_A Uncharacterized protein 97.8 0.00072 2.5E-08 75.5 20.4 184 35-244 133-351 (409)
204 3dr2_A Exported gluconolactona 97.8 0.0014 4.6E-08 69.7 21.4 203 37-268 49-285 (305)
205 3c75_H MADH, methylamine dehyd 97.8 0.0007 2.4E-08 75.9 19.5 242 37-322 122-409 (426)
206 2oiz_A Aromatic amine dehydrog 97.8 0.00067 2.3E-08 74.3 18.6 206 35-268 110-356 (361)
207 2bkl_A Prolyl endopeptidase; m 97.8 0.00031 1.1E-08 84.0 16.9 196 36-247 171-397 (695)
208 1npe_A Nidogen, entactin; glyc 97.6 0.016 5.4E-07 59.9 25.3 211 37-273 40-264 (267)
209 1yr2_A Prolyl oligopeptidase; 97.6 0.0012 4.1E-08 79.6 18.0 189 39-246 113-349 (741)
210 2mad_H Methylamine dehydrogena 97.5 0.011 3.9E-07 64.9 23.8 197 36-253 128-356 (373)
211 1qks_A Cytochrome CD1 nitrite 97.5 0.046 1.6E-06 63.5 29.4 266 36-324 200-547 (567)
212 1pjx_A Dfpase, DIISOPROPYLFLUO 97.5 0.021 7.2E-07 59.8 24.1 151 88-246 18-206 (314)
213 1qks_A Cytochrome CD1 nitrite 97.4 0.052 1.8E-06 63.1 28.3 179 64-256 175-382 (567)
214 2qe8_A Uncharacterized protein 97.3 0.0098 3.4E-07 64.2 19.8 199 36-245 20-276 (343)
215 3g4e_A Regucalcin; six bladed 97.2 0.0057 2E-07 64.5 16.5 190 89-289 14-231 (297)
216 3hrp_A Uncharacterized protein 97.2 0.01 3.5E-07 66.0 18.6 185 38-244 176-407 (409)
217 1xip_A Nucleoporin NUP159; bet 97.2 0.0042 1.4E-07 68.6 15.0 170 88-277 38-231 (388)
218 3dr2_A Exported gluconolactona 97.2 0.037 1.3E-06 58.3 22.0 158 74-246 33-223 (305)
219 2p4o_A Hypothetical protein; p 97.1 0.089 3.1E-06 55.5 24.5 206 37-269 36-264 (306)
220 3hxj_A Pyrrolo-quinoline quino 97.1 0.013 4.3E-07 62.0 17.8 53 65-119 116-168 (330)
221 3sjl_D Methylamine dehydrogena 97.1 0.013 4.5E-07 64.5 17.8 211 35-268 139-382 (386)
222 2ghs_A AGR_C_1268P; regucalcin 97.1 0.048 1.6E-06 58.3 22.0 188 90-289 51-261 (326)
223 2fp8_A Strictosidine synthase; 97.0 0.2 6.8E-06 53.1 26.0 197 37-255 23-276 (322)
224 3hxj_A Pyrrolo-quinoline quino 96.9 0.028 9.6E-07 59.3 18.4 199 68-289 80-285 (330)
225 1mda_H Methylamine dehydrogena 96.9 0.013 4.3E-07 64.3 15.8 224 37-267 69-364 (368)
226 3iuj_A Prolyl endopeptidase; h 96.9 0.017 5.9E-07 68.9 18.1 194 36-246 178-404 (693)
227 1xi4_A Clathrin heavy chain; a 96.8 2 6.8E-05 54.2 45.7 408 65-532 85-575 (1630)
228 1xi4_A Clathrin heavy chain; a 96.8 0.13 4.4E-06 64.5 24.2 119 693-812 1136-1256(1630)
229 3q7m_A Lipoprotein YFGL, BAMB; 96.4 0.58 2E-05 50.4 25.0 247 64-324 61-346 (376)
230 3v64_C Agrin; beta propeller, 96.4 1.2 4.3E-05 47.8 26.9 169 65-246 52-233 (349)
231 2hz6_A Endoplasmic reticulum t 96.3 0.0017 5.9E-08 71.3 3.7 183 43-256 8-201 (369)
232 3qqz_A Putative uncharacterize 96.3 0.81 2.8E-05 47.1 23.7 192 35-246 29-252 (255)
233 1npe_A Nidogen, entactin; glyc 96.2 0.87 3E-05 46.5 23.5 168 66-246 10-197 (267)
234 1mda_H Methylamine dehydrogena 96.1 0.11 3.8E-06 56.7 16.4 49 67-119 47-108 (368)
235 2qe8_A Uncharacterized protein 96.0 0.094 3.2E-06 56.3 15.4 187 34-235 68-309 (343)
236 3q7m_A Lipoprotein YFGL, BAMB; 96.0 1.7 5.9E-05 46.6 25.6 186 64-255 111-304 (376)
237 2ece_A 462AA long hypothetical 95.7 0.31 1.1E-05 54.4 17.9 183 37-235 142-399 (462)
238 3v64_C Agrin; beta propeller, 95.7 2.6 8.7E-05 45.3 25.2 195 37-244 66-272 (349)
239 1b89_A Protein (clathrin heavy 95.6 0.011 3.8E-07 65.9 6.0 169 645-816 17-187 (449)
240 3c75_H MADH, methylamine dehyd 95.6 0.38 1.3E-05 53.5 18.6 196 36-254 180-409 (426)
241 3v65_B Low-density lipoprotein 95.6 1.8 6.3E-05 47.2 24.0 169 65-246 95-276 (386)
242 3v65_B Low-density lipoprotein 95.3 2.3 7.9E-05 46.4 23.6 196 36-244 108-315 (386)
243 3p5b_L Low density lipoprotein 94.9 3.8 0.00013 44.9 24.0 165 36-212 104-279 (400)
244 2iwa_A Glutamine cyclotransfer 94.8 1.8 6.1E-05 44.8 19.6 166 74-256 8-190 (266)
245 3nol_A Glutamine cyclotransfer 94.8 3.9 0.00013 42.1 21.8 163 76-256 32-210 (262)
246 1ijq_A LDL receptor, low-densi 94.7 5.1 0.00018 42.1 24.4 192 39-245 25-236 (316)
247 1ijq_A LDL receptor, low-densi 94.6 5.4 0.00019 41.9 26.7 169 65-246 9-194 (316)
248 2xe4_A Oligopeptidase B; hydro 94.4 1.3 4.5E-05 53.0 20.0 182 36-244 177-397 (751)
249 3qqz_A Putative uncharacterize 94.0 2.9 9.8E-05 42.9 18.8 198 88-315 27-253 (255)
250 2xbg_A YCF48-like protein; pho 93.9 5.8 0.0002 41.9 21.9 160 74-245 150-320 (327)
251 2xpi_A Anaphase-promoting comp 93.7 11 0.00039 42.5 25.9 83 441-527 88-174 (597)
252 2fp8_A Strictosidine synthase; 93.7 4.7 0.00016 42.1 20.6 195 89-291 20-272 (322)
253 3p5b_L Low density lipoprotein 93.6 9.9 0.00034 41.5 23.9 169 65-246 91-276 (400)
254 3m0c_C LDL receptor, low-densi 93.6 7.7 0.00026 46.6 24.3 166 35-212 415-591 (791)
255 3tc9_A Hypothetical hydrolase; 93.5 3.3 0.00011 45.9 19.8 150 36-210 140-301 (430)
256 3sov_A LRP-6, low-density lipo 93.5 8.2 0.00028 40.7 22.1 196 37-245 28-236 (318)
257 2ece_A 462AA long hypothetical 93.5 2.5 8.5E-05 47.1 18.1 176 64-245 104-350 (462)
258 3pbp_A Nucleoporin NUP82; beta 93.2 0.62 2.1E-05 51.3 12.6 118 34-159 67-210 (452)
259 3tc9_A Hypothetical hydrolase; 92.3 1.4 4.6E-05 49.1 14.3 146 88-246 137-300 (430)
260 1n7d_A LDL receptor, low-densi 92.3 1.9 6.7E-05 51.1 16.4 169 65-246 385-570 (699)
261 1kb0_A Quinohemoprotein alcoho 92.1 5 0.00017 47.3 19.6 57 201-257 457-517 (677)
262 3nok_A Glutaminyl cyclase; bet 92.0 7.1 0.00024 40.2 18.0 163 76-256 44-219 (268)
263 2p4o_A Hypothetical protein; p 91.9 8.6 0.00029 39.9 19.4 197 75-289 22-243 (306)
264 3sov_A LRP-6, low-density lipo 91.6 15 0.00052 38.6 21.8 191 65-268 12-217 (318)
265 3s94_A LRP-6, low-density lipo 91.6 6.7 0.00023 45.7 19.7 196 37-246 33-242 (619)
266 3a9g_A Putative uncharacterize 90.9 3 0.0001 44.9 14.8 139 88-235 29-216 (354)
267 4hw6_A Hypothetical protein, I 90.2 7.7 0.00026 42.9 17.7 146 88-246 139-303 (433)
268 1yiq_A Quinohemoprotein alcoho 90.2 8.3 0.00028 45.5 19.0 67 201-267 455-525 (689)
269 2g8s_A Glucose/sorbosone dehyd 90.0 5.7 0.00019 42.6 16.0 74 75-150 7-87 (353)
270 3s25_A Hypothetical 7-bladed b 89.8 21 0.00072 37.3 22.2 170 40-246 21-215 (302)
271 2xbg_A YCF48-like protein; pho 89.6 22 0.00076 37.3 25.9 172 66-252 99-283 (327)
272 4hw6_A Hypothetical protein, I 88.9 29 0.001 38.2 21.2 149 36-209 142-303 (433)
273 3m0c_C LDL receptor, low-densi 88.9 42 0.0014 40.1 23.8 169 65-246 403-588 (791)
274 2xpi_A Anaphase-promoting comp 88.5 36 0.0012 38.2 28.6 105 696-800 446-573 (597)
275 2ism_A Putative oxidoreductase 87.7 7.1 0.00024 41.8 14.7 69 88-158 31-111 (352)
276 3mbr_X Glutamine cyclotransfer 87.5 26 0.00089 35.4 22.4 162 76-256 10-188 (243)
277 3das_A Putative oxidoreductase 87.4 12 0.00041 40.1 16.1 142 88-234 32-219 (347)
278 1kb0_A Quinohemoprotein alcoho 87.4 24 0.00082 41.4 20.2 184 65-254 86-353 (677)
279 3s94_A LRP-6, low-density lipo 87.1 32 0.0011 39.9 20.9 159 42-212 347-512 (619)
280 3mkq_B Coatomer subunit alpha; 86.9 2.1 7.3E-05 41.2 8.7 89 729-817 54-142 (177)
281 1tl2_A L10, protein (tachylect 86.5 4.4 0.00015 40.6 10.9 65 89-159 42-114 (236)
282 4a2l_A BT_4663, two-component 86.3 61 0.0021 38.4 31.5 172 67-246 236-435 (795)
283 1n7d_A LDL receptor, low-densi 86.1 1.8 6.1E-05 51.4 9.5 169 64-245 426-612 (699)
284 4a0p_A LRP6, LRP-6, low-densit 85.8 58 0.002 37.7 22.2 159 43-212 339-510 (628)
285 3s25_A Hypothetical 7-bladed b 85.2 28 0.00097 36.3 17.4 162 37-235 108-280 (302)
286 3kci_A Probable E3 ubiquitin-p 84.8 11 0.00038 40.9 14.5 144 95-246 7-186 (389)
287 2xe4_A Oligopeptidase B; hydro 84.8 12 0.0004 44.7 15.9 67 180-246 221-303 (751)
288 4a0p_A LRP6, LRP-6, low-densit 84.7 65 0.0022 37.3 23.6 167 64-245 57-235 (628)
289 1cru_A Protein (soluble quinop 84.7 24 0.00081 39.2 17.5 76 74-151 15-99 (454)
290 1b89_A Protein (clathrin heavy 84.6 1.5 5.2E-05 48.7 7.3 106 693-803 124-233 (449)
291 3a9g_A Putative uncharacterize 82.9 53 0.0018 34.9 19.3 30 90-119 137-180 (354)
292 1yiq_A Quinohemoprotein alcoho 81.9 30 0.001 40.7 17.7 84 37-120 239-342 (689)
293 2xzh_A Clathrin heavy chain 1; 81.7 12 0.00042 39.7 12.4 130 99-246 36-188 (365)
294 2ism_A Putative oxidoreductase 81.5 14 0.00047 39.5 13.4 54 66-119 105-180 (352)
295 1kv9_A Type II quinohemoprotei 80.4 56 0.0019 38.1 19.3 57 201-257 438-498 (668)
296 2p9w_A MAL S 1 allergenic prot 80.0 38 0.0013 35.9 15.7 58 189-246 146-214 (334)
297 1tl2_A L10, protein (tachylect 79.6 6.3 0.00021 39.5 8.9 108 37-155 45-157 (236)
298 3of7_A Regulator of chromosome 79.2 83 0.0028 34.8 19.8 148 88-246 67-284 (473)
299 3uc1_A DNA gyrase subunit A; D 79.2 60 0.002 34.2 17.2 65 88-158 95-173 (327)
300 2hz6_A Endoplasmic reticulum t 78.8 2 6.8E-05 46.5 5.6 61 190-250 8-71 (369)
301 3pbp_A Nucleoporin NUP82; beta 78.6 37 0.0013 37.4 15.3 159 42-206 21-208 (452)
302 4a2l_A BT_4663, two-component 78.1 1.2E+02 0.004 35.9 31.1 173 67-246 194-385 (795)
303 3kya_A Putative phosphatase; s 77.4 35 0.0012 38.4 15.4 149 89-246 140-340 (496)
304 3uc1_A DNA gyrase subunit A; D 77.1 78 0.0027 33.4 20.7 219 88-319 42-301 (327)
305 1w3b_A UDP-N-acetylglucosamine 77.1 76 0.0026 33.2 24.0 101 701-801 247-363 (388)
306 3kya_A Putative phosphatase; s 76.2 85 0.0029 35.2 18.1 61 36-108 142-214 (496)
307 3amr_A 3-phytase; beta-propell 76.2 85 0.0029 33.5 17.2 177 65-255 49-272 (355)
308 2y4t_A DNAJ homolog subfamily 75.2 90 0.0031 33.2 22.2 45 757-801 301-353 (450)
309 4d9s_A UVB-resistance protein 75.0 97 0.0033 33.4 22.6 147 89-246 122-304 (406)
310 1bpo_A Protein (clathrin); cla 74.8 25 0.00087 38.8 12.7 100 138-246 71-187 (494)
311 3qhy_B Beta-lactamase inhibito 74.7 79 0.0027 32.3 20.5 176 88-288 24-207 (282)
312 2iwa_A Glutamine cyclotransfer 73.6 24 0.00084 36.1 11.9 102 220-323 24-143 (266)
313 3kci_A Probable E3 ubiquitin-p 73.5 1E+02 0.0035 33.0 18.7 149 89-246 54-240 (389)
314 1a12_A RCC1, regulator of chro 73.4 1.1E+02 0.0036 33.1 26.0 150 88-246 164-364 (413)
315 4d9s_A UVB-resistance protein 73.3 1.1E+02 0.0036 33.1 22.5 148 88-246 16-200 (406)
316 3of7_A Regulator of chromosome 72.0 1.2E+02 0.0042 33.4 19.8 66 89-157 205-281 (473)
317 3v9f_A Two-component system se 70.9 1.7E+02 0.0057 34.4 33.4 172 65-246 332-523 (781)
318 4g26_A Pentatricopeptide repea 70.6 16 0.00053 41.3 10.5 86 719-804 102-202 (501)
319 3i4r_B Nuclear pore complex pr 65.8 20 0.00069 41.6 10.1 240 528-780 327-613 (644)
320 3v9f_A Two-component system se 64.1 2.2E+02 0.0076 33.3 28.6 171 66-246 427-610 (781)
321 4fhn_B Nucleoporin NUP120; pro 63.8 69 0.0024 40.0 15.3 39 219-257 240-278 (1139)
322 3c12_A FLGD, flagellar protein 61.1 11 0.00036 34.7 5.4 79 65-151 40-125 (138)
323 3qhy_B Beta-lactamase inhibito 60.9 1.5E+02 0.0051 30.2 24.2 196 65-289 41-247 (282)
324 2g8s_A Glucose/sorbosone dehyd 60.8 1.5E+02 0.0053 31.1 15.6 30 90-119 132-175 (353)
325 1kv9_A Type II quinohemoprotei 58.9 2E+02 0.0068 33.3 17.3 21 219-239 232-252 (668)
326 4g26_A Pentatricopeptide repea 58.8 8.4 0.00029 43.6 5.2 86 693-778 107-202 (501)
327 3ei3_A DNA damage-binding prot 58.1 3.5E+02 0.012 33.7 22.7 75 192-267 524-611 (1158)
328 3mvd_K Regulator of chromosome 57.5 2.1E+02 0.0071 30.8 21.9 69 88-157 127-203 (423)
329 1fwx_A Nitrous oxide reductase 56.5 63 0.0022 37.1 11.9 262 64-343 23-404 (595)
330 3sre_A PON1, serum paraoxonase 54.7 2.2E+02 0.0075 30.2 16.9 46 201-246 203-251 (355)
331 1w6s_A Methanol dehydrogenase 54.2 2.1E+02 0.0072 32.7 16.2 55 65-119 72-143 (599)
332 1zi0_A DNA gyrase subunit A; b 53.4 2.1E+02 0.0071 29.6 25.7 230 75-319 30-299 (307)
333 1wp5_A Topoisomerase IV; broke 53.3 2.2E+02 0.0074 29.8 18.9 79 73-158 77-171 (323)
334 3amr_A 3-phytase; beta-propell 53.0 2.3E+02 0.008 30.1 15.5 136 65-210 98-263 (355)
335 3i5p_A Nucleoporin NUP170; hel 51.5 37 0.0013 38.4 8.8 159 546-720 166-337 (525)
336 3hym_B Cell division cycle pro 51.2 1.9E+02 0.0067 28.6 21.4 103 701-803 169-296 (330)
337 3mkr_A Coatomer subunit epsilo 50.0 2.2E+02 0.0074 28.8 18.2 51 510-560 6-65 (291)
338 1k3i_A Galactose oxidase precu 49.7 3.4E+02 0.012 31.0 18.3 109 35-151 188-305 (656)
339 3no0_A DNA gyrase subunit A; D 49.6 2.2E+02 0.0077 28.8 24.5 213 88-319 24-267 (276)
340 4ady_A RPN2, 26S proteasome re 47.7 4.5E+02 0.015 31.8 20.3 143 663-832 113-274 (963)
341 4gq2_M Nucleoporin NUP120; bet 46.9 1.8E+02 0.0061 35.5 14.6 39 218-256 237-275 (950)
342 2fo7_A Synthetic consensus TPR 46.8 56 0.0019 27.2 7.7 78 722-799 35-125 (136)
343 1u89_A Talin 1, talin; 4-helix 45.8 45 0.0016 30.4 6.8 52 341-393 55-110 (139)
344 3ro2_A PINS homolog, G-protein 45.4 2.3E+02 0.0079 27.8 15.4 53 724-776 225-288 (338)
345 3mkr_A Coatomer subunit epsilo 45.2 2E+02 0.0069 29.0 13.0 102 701-802 44-155 (291)
346 3fp2_A TPR repeat-containing p 45.2 3.2E+02 0.011 29.4 19.7 141 698-838 351-536 (537)
347 1suu_A DNA gyrase subunit A; t 44.7 2.8E+02 0.0097 28.6 18.2 145 97-245 6-179 (312)
348 2vyi_A SGTA protein; chaperone 44.7 1.2E+02 0.004 25.1 9.5 77 724-800 14-103 (131)
349 1elw_A TPR1-domain of HOP; HOP 43.1 74 0.0025 25.8 7.8 78 723-800 5-95 (118)
350 1bpo_A Protein (clathrin); cla 42.5 3.9E+02 0.013 29.5 22.8 173 65-251 85-293 (494)
351 3upv_A Heat shock protein STI1 42.3 92 0.0031 26.4 8.4 78 725-802 7-97 (126)
352 3mkq_B Coatomer subunit alpha; 42.0 1.1E+02 0.0036 29.3 9.1 60 758-817 12-74 (177)
353 2be1_A Serine/threonine-protei 41.8 90 0.0031 33.1 9.6 28 142-169 110-138 (339)
354 1fwx_A Nitrous oxide reductase 41.6 36 0.0012 39.0 6.8 69 34-116 278-360 (595)
355 3sre_A PON1, serum paraoxonase 40.3 3.6E+02 0.012 28.5 19.6 158 37-209 54-251 (355)
356 1na0_A Designed protein CTPR3; 39.1 1.5E+02 0.0053 24.0 10.5 77 724-800 11-100 (125)
357 1zvt_A Topoisomerase IV subuni 38.6 2.5E+02 0.0084 28.2 12.0 118 190-314 43-179 (256)
358 1vyk_A Oxygen-evolving enhance 38.5 25 0.00085 32.6 3.9 107 689-834 40-149 (149)
359 3sf4_A G-protein-signaling mod 38.4 3.4E+02 0.012 27.7 17.3 45 757-801 273-331 (406)
360 4a1s_A PINS, partner of inscut 38.0 3.6E+02 0.012 27.9 19.7 78 724-801 265-367 (411)
361 3lvg_A Clathrin heavy chain 1; 37.0 0.82 2.8E-05 51.0 -7.4 92 725-817 119-210 (624)
362 1flg_A Protein (quinoprotein e 36.8 5.1E+02 0.017 29.3 18.5 58 200-257 465-526 (582)
363 1hh8_A P67PHOX, NCF-2, neutrop 36.3 89 0.0031 29.2 8.0 99 703-801 18-145 (213)
364 3no0_A DNA gyrase subunit A; D 35.6 3.6E+02 0.012 27.2 18.1 65 88-158 68-143 (276)
365 2p9w_A MAL S 1 allergenic prot 35.5 4.1E+02 0.014 27.9 20.1 141 64-209 33-214 (334)
366 2xcb_A PCRH, regulatory protei 35.5 1.5E+02 0.0052 25.8 9.0 76 727-802 23-111 (142)
367 3mvd_K Regulator of chromosome 35.0 4.4E+02 0.015 28.1 25.6 174 64-246 144-373 (423)
368 2ho1_A Type 4 fimbrial biogene 35.0 2.1E+02 0.0073 27.1 10.8 102 701-802 81-200 (252)
369 3l6v_A GYRA, DNA gyrase subuni 34.5 4.5E+02 0.015 27.9 28.1 230 74-319 33-338 (370)
370 3as5_A MAMA; tetratricopeptide 34.4 1.3E+02 0.0043 26.7 8.5 80 722-801 76-168 (186)
371 3sz7_A HSC70 cochaperone (SGT) 34.4 1.4E+02 0.0047 26.7 8.7 79 723-801 12-103 (164)
372 3nol_A Glutamine cyclotransfer 32.9 2.7E+02 0.0092 28.2 11.1 7 238-244 97-103 (262)
373 3nok_A Glutaminyl cyclase; bet 32.6 86 0.003 32.0 7.3 98 190-288 104-210 (268)
374 2xzh_A Clathrin heavy chain 1; 32.4 4.8E+02 0.016 27.6 25.1 191 37-251 71-294 (365)
375 2ho1_A Type 4 fimbrial biogene 31.9 3.3E+02 0.011 25.7 15.5 102 699-800 113-232 (252)
376 4eqf_A PEX5-related protein; a 31.6 4.1E+02 0.014 26.9 13.0 82 721-802 212-306 (365)
377 2lni_A Stress-induced-phosphop 30.6 1.8E+02 0.0062 24.0 8.4 21 781-801 88-108 (133)
378 3l6v_A GYRA, DNA gyrase subuni 30.6 5.1E+02 0.018 27.5 17.4 143 96-244 4-177 (370)
379 2wg3_C Hedgehog-interacting pr 29.9 1.2E+02 0.0041 33.5 8.6 62 88-149 14-89 (463)
380 1xks_A Nuclear pore complex pr 29.8 4.9E+02 0.017 28.5 13.3 108 34-158 39-169 (450)
381 2ad6_A Methanol dehydrogenase 28.9 3.2E+02 0.011 30.8 12.3 19 65-83 175-194 (571)
382 1zi0_A DNA gyrase subunit A; b 28.8 4.9E+02 0.017 26.7 17.3 144 97-244 1-173 (307)
383 3as5_A MAMA; tetratricopeptide 28.4 3E+02 0.01 24.1 11.2 82 721-802 41-135 (186)
384 3gyz_A Chaperone protein IPGC; 28.0 1.8E+02 0.0062 26.3 8.2 99 725-833 39-150 (151)
385 3das_A Putative oxidoreductase 28.0 4.3E+02 0.015 27.8 12.2 69 36-117 35-116 (347)
386 2vgx_A Chaperone SYCD; alterna 27.9 1.9E+02 0.0064 25.7 8.3 77 725-801 24-113 (148)
387 1flg_A Protein (quinoprotein e 27.8 6.9E+02 0.024 28.1 17.0 52 67-119 79-139 (582)
388 3hym_B Cell division cycle pro 27.6 4.4E+02 0.015 25.8 14.4 18 757-774 199-216 (330)
389 4gco_A Protein STI-1; structur 27.6 1.2E+02 0.0042 26.1 6.8 64 754-826 50-121 (126)
390 2fbn_A 70 kDa peptidylprolyl i 27.5 1.5E+02 0.0051 27.5 7.8 46 756-801 93-146 (198)
391 2q7f_A YRRB protein; TPR, prot 27.2 3.8E+02 0.013 24.9 11.0 76 701-776 101-184 (243)
392 1zvt_A Topoisomerase IV subuni 27.0 4.8E+02 0.016 26.0 16.9 137 101-245 5-161 (256)
393 1wy6_A Hypothetical protein ST 26.9 1.9E+02 0.0066 26.5 7.5 62 774-835 71-140 (172)
394 2q7f_A YRRB protein; TPR, prot 26.8 1.2E+02 0.004 28.7 7.1 46 700-745 134-182 (243)
395 3fp2_A TPR repeat-containing p 26.6 6.1E+02 0.021 27.1 16.7 80 722-801 276-368 (537)
396 1elr_A TPR2A-domain of HOP; HO 26.5 2.2E+02 0.0076 23.2 8.2 98 728-835 10-127 (131)
397 1pul_A Hypothetical protein C3 26.1 2.3E+02 0.0077 25.3 7.8 40 380-419 18-58 (125)
398 1zvu_A Topoisomerase IV subuni 25.5 7.3E+02 0.025 28.9 14.0 141 97-245 470-631 (716)
399 2pm7_A Protein WEB1, protein t 25.2 2.5E+02 0.0087 30.3 9.8 168 352-533 143-366 (399)
400 2dba_A Smooth muscle cell asso 25.1 1.5E+02 0.0051 25.3 6.9 62 757-827 71-140 (148)
401 4ga2_A E3 SUMO-protein ligase 25.0 1.1E+02 0.0037 27.4 6.0 94 730-831 39-145 (150)
402 1wp5_A Topoisomerase IV; broke 24.4 6.1E+02 0.021 26.2 24.1 240 88-347 39-320 (323)
403 3osv_A Flagellar basal-BODY RO 24.2 43 0.0015 30.5 2.9 33 65-97 38-70 (138)
404 1b2p_A Protein (lectin); manno 23.9 2.4E+02 0.0081 24.6 7.8 59 41-114 27-85 (119)
405 1u6h_B Talin; protein-protein 23.9 15 0.00051 24.5 -0.2 12 382-393 1-12 (31)
406 3ei3_A DNA damage-binding prot 23.9 1.1E+03 0.038 29.1 24.7 213 36-271 515-748 (1158)
407 3spa_A Mtrpol, DNA-directed RN 23.0 58 0.002 39.9 4.4 86 692-777 128-227 (1134)
408 2a7w_A PRA-PH, phosphoribosyl- 22.3 3.6E+02 0.012 23.7 8.3 83 488-584 7-92 (116)
409 3vtx_A MAMA; tetratricopeptide 21.9 2.2E+02 0.0077 25.6 7.8 78 724-801 75-165 (184)
410 3q49_B STIP1 homology and U bo 21.8 1.5E+02 0.0051 25.1 6.1 79 724-802 11-102 (137)
411 1suu_A DNA gyrase subunit A; t 21.8 6.6E+02 0.023 25.7 24.6 162 75-245 35-229 (312)
412 1yvw_A PRA-PH, phosphoribosyl- 20.9 3.6E+02 0.012 23.6 8.0 83 488-584 6-91 (115)
413 3mbr_X Glutamine cyclotransfer 20.7 6.3E+02 0.021 25.1 15.9 99 190-289 73-180 (243)
414 3nf1_A KLC 1, kinesin light ch 20.1 5.5E+02 0.019 24.7 10.9 54 724-777 155-221 (311)
415 2fo7_A Synthetic consensus TPR 20.1 96 0.0033 25.6 4.3 78 725-802 4-94 (136)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.86 E-value=2.5e-20 Score=218.19 Aligned_cols=282 Identities=16% Similarity=0.226 Sum_probs=223.7
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYR 112 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l 112 (839)
....++++|+|..+++.. .+++|++|+.+|+++.++..|. +.|.++.|+|++. +++++.||+|++
T Consensus 264 ~v~~v~~~~d~~~l~~~~------------~d~~i~~w~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~t~~~d~~i~~ 329 (577)
T 2ymu_A 264 SVNGVAFRPDGQTIASAS------------DDKTVKLWNRNGQLLQTLTGHS--SSVWGVAFSPDGQTIASASDDKTVKL 329 (577)
T ss_dssp CEEEEEECTTSSEEEEEE------------TTSCEEEEETTSCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CEEEEEEcCCCCEEEEEe------------CCCEEEEEeCCCcEEEEEecCC--CCeEEEEECCCCCEEEEEeCCCeEEE
Confidence 345788999999999886 5799999999999999999998 9999999999987 579999999999
Q ss_pred EeCCCCccccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCC
Q 003205 113 YNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTG 191 (839)
Q Consensus 113 ~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~ 191 (839)
|+..++......+| ...|..+.++++|..+++... ....+++..+.....+.. ......++ .|||+|
T Consensus 330 w~~~~~~~~~~~~~-----~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~----~~~~v~~~---~~s~dg 397 (577)
T 2ymu_A 330 WNRNGQHLQTLTGH-----SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG----HSSSVRGV---AFSPDG 397 (577)
T ss_dssp EETTSCEEEEECCC-----SSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEEC----CSSCEEEE---EECTTS
T ss_pred EeCCCCeeEEEeCC-----CCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecC----CCCCeEEE---EECCCC
Confidence 99988876666677 677999999999988887643 344566665444444432 22222233 567799
Q ss_pred cEEEEEEeCCeEEEEecCCcc----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceee
Q 003205 192 SVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAW 267 (839)
Q Consensus 192 ~~~v~~s~d~tv~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~W 267 (839)
+.++..+.|++|++|+.++.. ..+..+|..++|||||+++|+.+.||++.+|+.+ .+.+..+..+ ...+..++|
T Consensus 398 ~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~-~~~v~~~~~ 475 (577)
T 2ymu_A 398 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGH-SSSVRGVAF 475 (577)
T ss_dssp SCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECC-SSCEEEEEE
T ss_pred CEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCC-CCCEEEEEE
Confidence 999999999999999988764 5688899999999999999999999999999865 4444445444 234555666
Q ss_pred e---------cCceEEEEecC----EEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEccCcceeeeccchhhHhhhc
Q 003205 268 C---------GMDSVLLYWND----MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFA 331 (839)
Q Consensus 268 c---------G~d~vv~~~~~----~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~~~~vf~ 331 (839)
+ ++|..+..|+. ...+.|+.+. .+.|.+++..+++...|| ||||+.+ .+.++.+..|...|..
T Consensus 476 spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~~~~~~~~~h~~~v~~ 554 (577)
T 2ymu_A 476 SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWG 554 (577)
T ss_dssp CTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEE
T ss_pred cCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-CCEEEEEcCCCCCEEE
Confidence 4 56777777863 3456777765 788999999999999999 9999975 7889999999999999
Q ss_pred cCCCChhhhHHHH
Q 003205 332 IGSTSPAALLYDA 344 (839)
Q Consensus 332 igS~~pga~L~~A 344 (839)
+..++.|.+|+.+
T Consensus 555 ~~fs~dg~~l~s~ 567 (577)
T 2ymu_A 555 VAFSPDGQTIASA 567 (577)
T ss_dssp EEECTTSSCEEEE
T ss_pred EEEcCCCCEEEEE
Confidence 9888888777654
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.86 E-value=3e-20 Score=217.51 Aligned_cols=283 Identities=16% Similarity=0.225 Sum_probs=225.8
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYR 112 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l 112 (839)
....++++|+|..+|+.. .+++|++|+.+|+++.++..|. +.|.++.|+|+++ +++++.||++++
T Consensus 223 ~v~~~~~s~dg~~l~~~~------------~d~~i~~w~~~~~~~~~~~~~~--~~v~~v~~~~d~~~l~~~~~d~~i~~ 288 (577)
T 2ymu_A 223 SVRGVAFSPDGQTIASAS------------DDKTVKLWNRNGQLLQTLTGHS--SSVNGVAFRPDGQTIASASDDKTVKL 288 (577)
T ss_dssp CEEEEEECTTSSCEEEEE------------TTSCEEEECTTSCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CEEEEEECCCCCEEEEEe------------CCCEEEEEeCCCCEEEEEecCC--CCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence 345788999999999886 5899999999999999999998 9999999999997 579999999999
Q ss_pred EeCCCCccccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCC
Q 003205 113 YNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTG 191 (839)
Q Consensus 113 ~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~ 191 (839)
|+..|+......+| ...|..+.++++|..+++.+. ....+|+..+.....+.. .....+++ .|||+|
T Consensus 289 w~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~----~~~~v~~~---~~s~~g 356 (577)
T 2ymu_A 289 WNRNGQLLQTLTGH-----SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTG----HSSSVWGV---AFSPDG 356 (577)
T ss_dssp EETTSCEEEEECCC-----SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECC----CSSCEEEE---EECTTS
T ss_pred EeCCCcEEEEEecC-----CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeC----CCCCEEEE---EECCCC
Confidence 99999987777888 678999999999988877643 345567776665555542 23344444 567799
Q ss_pred cEEEEEEeCCeEEEEecCCcc----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceee
Q 003205 192 SVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAW 267 (839)
Q Consensus 192 ~~~v~~s~d~tv~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~W 267 (839)
..++..+.|++|.+|+.++.. ..+..+|..++|||||++||+++.||+|.+|+.+ .+.+..+..+ ...+..++|
T Consensus 357 ~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~~~-~~~v~~~~~ 434 (577)
T 2ymu_A 357 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGH-SSSVWGVAF 434 (577)
T ss_dssp SEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEECC-SSCEEEEEE
T ss_pred CEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEecCC-CCCeEEEEE
Confidence 999999999999999988764 5678899999999999999999999999999865 4444444444 234445555
Q ss_pred e---------cCceEEEEecC----EEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEccCcceeeeccchhhHhhhc
Q 003205 268 C---------GMDSVLLYWND----MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFA 331 (839)
Q Consensus 268 c---------G~d~vv~~~~~----~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~~~~vf~ 331 (839)
. +.|..+..|+. ...+.|+.+. .+.|.+++..+++...|| ||||+.+ .+.++.++.+...|..
T Consensus 435 s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~~~~~~~~h~~~v~~ 513 (577)
T 2ymu_A 435 SPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRG 513 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEE
T ss_pred CCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CCEEEEEeCCCCCEEE
Confidence 4 56666667753 3456677665 688999999999999998 9999976 7889999999988988
Q ss_pred cCCCChhhhHHHHH
Q 003205 332 IGSTSPAALLYDAL 345 (839)
Q Consensus 332 igS~~pga~L~~A~ 345 (839)
+..++.|.+|+.+.
T Consensus 514 l~~s~dg~~l~s~~ 527 (577)
T 2ymu_A 514 VAFSPDGQTIASAS 527 (577)
T ss_dssp EEECTTSSCEEEEE
T ss_pred EEEcCCCCEEEEEE
Confidence 88888887776543
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.83 E-value=1.5e-18 Score=190.16 Aligned_cols=253 Identities=12% Similarity=0.097 Sum_probs=191.3
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVY 111 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~ 111 (839)
....++++|+|..+|+.+ .|++|+||+ ..|+.+.+++.+. +.|.++.|+|++. |++++.||+|+
T Consensus 57 ~v~~~~~s~d~~~l~s~s------------~Dg~v~iWd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSAS------------QDGKLIIWDSYTTNKVHAIPLRS--SWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp CEEEEEECTTSSEEEEEE------------TTTEEEEEETTTCCEEEEEECSS--SCEEEEEECTTSSEEEEEETTCEEE
T ss_pred ceEEEEECCCCCEEEEEe------------CCCcEEEEECCCCCcceEeecCC--ccEEEEEECCCCCEEEEEeCCCeEE
Confidence 556889999999999987 589999999 5789999999988 9999999999997 57999999999
Q ss_pred EEeCCCC-----ccccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCceE-EEcCCCCCCCCCceEEEeCC
Q 003205 112 RYNIHAE-----LIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKV-CELARPEVEELPHCVAVIEP 185 (839)
Q Consensus 112 l~~~~G~-----~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~~-~~l~~~~~~~~~~~w~vi~~ 185 (839)
+|++... ......+| ...|..+.+.++|.++..+......+|++..... ..+.. +....+++
T Consensus 123 iw~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~----h~~~v~~~--- 190 (340)
T 1got_B 123 IYNLKTREGNVRVSRELAGH-----TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTG----HTGDVMSL--- 190 (340)
T ss_dssp EEETTTCSBSCEEEEEEECC-----SSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC----CSSCEEEE---
T ss_pred EEECccCCCcceeEEEecCC-----CccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcC----CCCceEEE---
Confidence 9987532 23345567 6678888998888755544444456777765433 33321 22333444
Q ss_pred CCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCC-C
Q 003205 186 KYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCES-A 259 (839)
Q Consensus 186 ~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~-~ 259 (839)
.|+|++..++..+.|++|++||..... ..+..+|..++|||+|+++|+++.||+|.+|+..-.+.+..+.... .
T Consensus 191 ~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~ 270 (340)
T 1got_B 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII 270 (340)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcc
Confidence 566799999999999999999976543 5678899999999999999999999999999876555554443221 1
Q ss_pred CCCCceeee---------cCceEEEEecC-----EEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEc
Q 003205 260 LPPEQIAWC---------GMDSVLLYWND-----MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILS 312 (839)
Q Consensus 260 ~~p~~~~Wc---------G~d~vv~~~~~-----~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit 312 (839)
..+..+.|. ++|..+..|+- .-.+.|+.+. .+.|.+++..+++...|| ||||.
T Consensus 271 ~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 233455554 56777778863 3456788775 788999999999999999 99984
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.83 E-value=8.8e-19 Score=197.51 Aligned_cols=253 Identities=13% Similarity=0.151 Sum_probs=196.7
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVY 111 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~ 111 (839)
....++++|+|..+|+.+ .|++|+||+. .|+.+.++..|. +.|.++.|+|++. |++++.||+|+
T Consensus 110 ~V~~~~~~p~~~~l~s~s------------~Dg~i~vwd~~~~~~~~~l~~h~--~~V~~v~~~~~~~~l~sgs~D~~i~ 175 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSAS------------EDATIKVWDYETGDFERTLKGHT--DSVQDISFDHSGKLLASCSADMTIK 175 (410)
T ss_dssp CEEEEEECSSSSEEEEEE------------SSSCEEEEETTTCCCCEEECCCS--SCEEEEEECTTSSEEEEEETTSCCC
T ss_pred cEEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCcEEEEEeccC--CcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 445899999999999987 5899999994 788999999998 9999999999987 58999999999
Q ss_pred EEeCCC-CccccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCce-EEEcCCCCCCCCCceEEEeCCCCC
Q 003205 112 RYNIHA-ELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMK-VCELARPEVEELPHCVAVIEPKYT 188 (839)
Q Consensus 112 l~~~~G-~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~-~~~l~~~~~~~~~~~w~vi~~~~S 188 (839)
+|++.+ +......+| ...|..+.|.++|-.+++++. ..+.+|++.... ...+.. +......+ .++
T Consensus 176 iwd~~~~~~~~~~~~h-----~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~----h~~~v~~~---~~~ 243 (410)
T 1vyh_C 176 LWDFQGFECIRTMHGH-----DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG----HREWVRMV---RPN 243 (410)
T ss_dssp EEETTSSCEEECCCCC-----SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC----CSSCEEEE---EEC
T ss_pred EEeCCCCceeEEEcCC-----CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeC----CCccEEEE---EEC
Confidence 999754 556667788 678999999999887777654 345677776433 333321 22222223 456
Q ss_pred CCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCC--------------------CcEEEEeecCCeEEEE
Q 003205 189 MTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPN--------------------GNFVACFTHDGRLVVN 243 (839)
Q Consensus 189 ~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spn--------------------g~~iA~~~~~g~i~i~ 243 (839)
|+|..++..+.|++|++|+..... ..+..+|..++|+|+ |.++|+++.||+|++|
T Consensus 244 ~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iw 323 (410)
T 1vyh_C 244 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 323 (410)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEE
Confidence 799999999999999999987543 567889999999997 7799999999999999
Q ss_pred ecCCCCccccccCCCCCCCCceeee---------cCceEEEEecC-----EEEEEcCCCC--ceEeccCCCeEEeecCCc
Q 003205 244 NTNFSSPVIDESCESALPPEQIAWC---------GMDSVLLYWND-----MLVMVAPQAE--PVQYFYDEPLVLIPECDG 307 (839)
Q Consensus 244 ssd~~~~l~e~~~~~~~~p~~~~Wc---------G~d~vv~~~~~-----~l~lig~~~~--~v~f~~~~~~~l~~E~DG 307 (839)
+...+..+..+..+. ..+..+.|. |.|..+..|+- .-.+.|+.+. .+.|.++++.+++...||
T Consensus 324 d~~~~~~~~~~~~h~-~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~ 402 (410)
T 1vyh_C 324 DVSTGMCLMTLVGHD-NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 402 (410)
T ss_dssp ETTTTEEEEEEECCS-SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTS
T ss_pred ECCCCceEEEEECCC-CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 977666666665552 344455553 67888888863 3456677665 788988999999999999
Q ss_pred -eEEEcc
Q 003205 308 -VRILSN 313 (839)
Q Consensus 308 -vRIit~ 313 (839)
||||..
T Consensus 403 ~i~vW~~ 409 (410)
T 1vyh_C 403 TVKVWEC 409 (410)
T ss_dssp EEEEEC-
T ss_pred cEEEEeC
Confidence 999963
No 5
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.82 E-value=6.7e-19 Score=193.54 Aligned_cols=264 Identities=17% Similarity=0.184 Sum_probs=179.1
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCc-eeE--E-EecCCCCCeEEEeecCCCe-EEEEEeCC
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVL-ISE--T-VWKNPGGRLIGMSWSEDQT-LICVVQDG 108 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~l-l~t--i-~~~~~~~~I~~~~fs~de~-Lv~v~~dG 108 (839)
..+.++++|+|..+|+.+ .|++|+||+..+.. +.. + ..|. +.|.++.|+|++. |++++.||
T Consensus 18 ~v~~l~~sp~g~~las~~------------~D~~i~iw~~~~~~~~~~~~~~~~h~--~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCG------------GDRRIRIWGTEGDSWICKSVLSEGHQ--RTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEECTTSSCEEEEE------------TTSCEEEEEEETTEEEEEEEECSSCS--SCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEEEECCCCCEEEEEc------------CCCeEEEEEcCCCcceeeeeeccccC--CcEEEEEECCCCCEEEEEECCC
Confidence 456899999999999987 58999999976543 222 2 3466 8899999999997 68999999
Q ss_pred eEEEEeCC-CC--ccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCce----EEEcCCCCCCCCCceE
Q 003205 109 TVYRYNIH-AE--LIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMK----VCELARPEVEELPHCV 180 (839)
Q Consensus 109 tv~l~~~~-G~--~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~----~~~l~~~~~~~~~~~w 180 (839)
++++|+.. ++ ......+| ...|..+.|+++|..+++.+.+ ...+|++.... ...+.. +.....
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h-----~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~----h~~~v~ 154 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGH-----ENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS----HTQDVK 154 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCC-----SSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECC----CCSCEE
T ss_pred cEEEEEccCCCeEEEEEccCC-----CCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecC----cCCCeE
Confidence 99999864 33 24556678 6789999999999888886542 34455554321 112211 222223
Q ss_pred EEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCc---
Q 003205 181 AVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSP--- 250 (839)
Q Consensus 181 ~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~--- 250 (839)
++ .|+|++..++..+.|++|.+|+..... ..|.++|..|+|||+|++||+++.||+|.||+......
T Consensus 155 ~~---~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~ 231 (345)
T 3fm0_A 155 HV---VWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQG 231 (345)
T ss_dssp EE---EECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTC
T ss_pred EE---EECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCcc
Confidence 33 567799999999999999999876431 56788999999999999999999999999997421111
Q ss_pred ------------cccccCCCCCCCCceeeec---------CceEEEEecC---------EEEE-----EcCCCC--ceEe
Q 003205 251 ------------VIDESCESALPPEQIAWCG---------MDSVLLYWND---------MLVM-----VAPQAE--PVQY 293 (839)
Q Consensus 251 ------------l~e~~~~~~~~p~~~~WcG---------~d~vv~~~~~---------~l~l-----ig~~~~--~v~f 293 (839)
+..+...-......++|+. .|..+..|+. ...+ .|+.+. .+.|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 311 (345)
T 3fm0_A 232 VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAW 311 (345)
T ss_dssp CCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEE
T ss_pred ceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEE
Confidence 1111111123456788873 3444455531 1111 245444 6889
Q ss_pred ccCCC-eEEeecCCc-eEEEccCcceeeeccc
Q 003205 294 FYDEP-LVLIPECDG-VRILSNSSMEFLQRVP 323 (839)
Q Consensus 294 ~~~~~-~~l~~E~DG-vRIit~~~~~~l~~Vp 323 (839)
.++++ .+++...|| ||||.......+.+.|
T Consensus 312 ~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~~ 343 (345)
T 3fm0_A 312 NPKEPGLLASCSDDGEVAFWKYQRPEGLHHHH 343 (345)
T ss_dssp CSSSTTEEEEEETTSCEEEEEECC--------
T ss_pred eCCCceEEEEcCCCCcEEEEEecCCCCccccc
Confidence 88875 778888999 9999998777665554
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.81 E-value=2.1e-18 Score=185.98 Aligned_cols=251 Identities=8% Similarity=0.063 Sum_probs=192.9
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVY 111 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~ 111 (839)
....++++|+|..+|+.. .|++|+||+. .|+.+.++..+. +.|.++.|+|++. |++++.||+|+
T Consensus 15 ~V~~~~fsp~~~~l~s~~------------~dg~v~lWd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTL------------YSGRVELWNYETQVEVRSIQVTE--TPVRAGKFIARKNWIIVGSDDFRIR 80 (304)
T ss_dssp CEEEEEECSSSSEEEEEE------------TTSEEEEEETTTTEEEEEEECCS--SCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred ceEEEEECCCCCEEEEEc------------CCCcEEEEECCCCceeEEeeccC--CcEEEEEEeCCCCEEEEECCCCEEE
Confidence 456899999999999986 5899999996 578899999988 8999999999987 68999999999
Q ss_pred EEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCc-eE-EEcCCCCCCCCCceEEEeCCCC
Q 003205 112 RYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATM-KV-CELARPEVEELPHCVAVIEPKY 187 (839)
Q Consensus 112 l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~-~~-~~l~~~~~~~~~~~w~vi~~~~ 187 (839)
+|++ .|+......+| ...|..+.|+++|..+++++.+ ...+|++... .. ..+.. +....+++ .|
T Consensus 81 vwd~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~----h~~~v~~v---~~ 148 (304)
T 2ynn_A 81 VFNYNTGEKVVDFEAH-----PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG----HEHFVMCV---AF 148 (304)
T ss_dssp EEETTTCCEEEEEECC-----SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECC----CCSCEEEE---EE
T ss_pred EEECCCCcEEEEEeCC-----CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcc----cCCcEEEE---EE
Confidence 9996 57766666778 6789999999999888886543 4456666533 22 22221 22333334 45
Q ss_pred CC-CCcEEEEEEeCCeEEEEecCCcc------cccCCCceEEEECC--CCcEEEEeecCCeEEEEecCCCCccccccCCC
Q 003205 188 TM-TGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSP--NGNFVACFTHDGRLVVNNTNFSSPVIDESCES 258 (839)
Q Consensus 188 S~-~~~~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~Sp--ng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~ 258 (839)
+| ++..++..+.|++|++||..... ..+..++..+.++| +++++|+++.||+|++|+..-.+.+.++
T Consensus 149 ~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~---- 224 (304)
T 2ynn_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL---- 224 (304)
T ss_dssp CTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE----
T ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee----
Confidence 66 67889999999999999986432 24556788888887 7889999999999999986533333322
Q ss_pred CCCCCceeeecCceEEEEecCEEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEccCcceeeeccchhhHhhhccCCC
Q 003205 259 ALPPEQIAWCGMDSVLLYWNDMLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIGST 335 (839)
Q Consensus 259 ~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~~~~vf~igS~ 335 (839)
.|+.+. .+.|.++++.+++...|| ||||.....+.++.++.+...++.+...
T Consensus 225 -------------------------~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~ 279 (304)
T 2ynn_A 225 -------------------------EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH 279 (304)
T ss_dssp -------------------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEEC
T ss_pred -------------------------CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEEC
Confidence 233332 466777888899999999 9999999999999999888888887766
Q ss_pred Chhh
Q 003205 336 SPAA 339 (839)
Q Consensus 336 ~pga 339 (839)
+++.
T Consensus 280 ~~~~ 283 (304)
T 2ynn_A 280 PTGR 283 (304)
T ss_dssp TTCG
T ss_pred CCCC
Confidence 6654
No 7
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.81 E-value=3.3e-18 Score=186.32 Aligned_cols=254 Identities=12% Similarity=0.078 Sum_probs=186.9
Q ss_pred CCCCEEEEcCC----CCeEEEEecCchhhhhhcccCCceEEEEcCCCC---ceeEEEecCCCCCeEEEeecCCCe-EEEE
Q 003205 33 LSRNKVACAPF----GGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV---LISETVWKNPGGRLIGMSWSEDQT-LICV 104 (839)
Q Consensus 33 l~~~~va~sp~----Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~---ll~ti~~~~~~~~I~~~~fs~de~-Lv~v 104 (839)
-..+.++++|+ |..+|+.+ .|++|+||+..+. +..++..|. +.|.++.|++++. ++++
T Consensus 33 ~~V~~v~~~~~~~~~~~~l~tgs------------~D~~v~vW~~~~~~~~~~~~l~gh~--~~v~~~~~~~~~~~l~s~ 98 (321)
T 3ow8_A 33 DAIWSVAWGTNKKENSETVVTGS------------LDDLVKVWKWRDERLDLQWSLEGHQ--LGVVSVDISHTLPIAASS 98 (321)
T ss_dssp SCEEEEEEC-------CEEEEEE------------TTSCEEEEEEETTEEEEEEEECCCS--SCEEEEEECSSSSEEEEE
T ss_pred CcEEEEEEecCCCCCCCEEEEEc------------CCCCEEEEECCCCCeeeeeeeccCC--CCEEEEEECCCCCEEEEE
Confidence 35678888875 56788876 6899999996543 344677787 8999999999987 5799
Q ss_pred EeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCc-eEEEcCCCCCCCCCceEE
Q 003205 105 VQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATM-KVCELARPEVEELPHCVA 181 (839)
Q Consensus 105 ~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~-~~~~l~~~~~~~~~~~w~ 181 (839)
+.||+|++||+ .|+......++ ...|..+.|+++|..+++++.+ ...++++... ....+.. ......+
T Consensus 99 s~D~~i~lWd~~~~~~~~~~~~~-----~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~----~~~~v~~ 169 (321)
T 3ow8_A 99 SLDAHIRLWDLENGKQIKSIDAG-----PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDT----RGKFILS 169 (321)
T ss_dssp ETTSEEEEEETTTTEEEEEEECC-----TTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEEC----SSSCEEE
T ss_pred eCCCcEEEEECCCCCEEEEEeCC-----CccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecC----CCceEEE
Confidence 99999999996 45554444444 4567788999999888887542 3455666533 2233322 1122222
Q ss_pred EeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccC
Q 003205 182 VIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESC 256 (839)
Q Consensus 182 vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~ 256 (839)
..|||+|+.++..+.|++|++||..... ..+..+|..++|||+|++||+++.||+|++|+..-.+.+..+..
T Consensus 170 ---~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 246 (321)
T 3ow8_A 170 ---IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG 246 (321)
T ss_dssp ---EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred ---EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC
Confidence 3577899999999999999999987543 46788999999999999999999999999999775666655555
Q ss_pred CCCCCCCceeee---------cCceEEEEecC-----EEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEcc
Q 003205 257 ESALPPEQIAWC---------GMDSVLLYWND-----MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSN 313 (839)
Q Consensus 257 ~~~~~p~~~~Wc---------G~d~vv~~~~~-----~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit~ 313 (839)
+ ...+..++|+ +.|..+..|+- ...+.|+.+. .+.|.+++..+++...|| ||||..
T Consensus 247 h-~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 247 H-ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp C-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred C-CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 5 3345666675 56777788863 2345677665 788999999999999999 999973
No 8
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.81 E-value=3.1e-18 Score=203.34 Aligned_cols=273 Identities=12% Similarity=0.065 Sum_probs=196.8
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVY 111 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~ 111 (839)
....++++|+|+.||... +++|+||+. .|+.+.++..|. +.|.++.|||||+ |++++.||+|+
T Consensus 20 ~~~~~~~spdg~~l~~~~-------------~~~v~l~~~~~~~~~~~~~~h~--~~v~~~~~spdg~~lasg~~d~~v~ 84 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCN-------------GTSVYTVPVGSLTDTEIYTEHS--HQTTVAKTSPSGYYCASGDVHGNVR 84 (611)
T ss_dssp CCCCCEECTTSSEEEEEE-------------TTEEEEEETTCSSCCEEECCCS--SCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ceeEEeeCCCCCEEEeCC-------------CCEEEEecCCCcccCeEecCCC--CceEEEEECCCCcEEEEEeCCCCEE
Confidence 445789999999999875 468999997 589999999998 9999999999998 57999999999
Q ss_pred EEeCC-CCc--cccCCCCCccccccCeEEEEEECCeEEEEecCC---e--EEEEecCCCceEEEcCCCCCCCCCceEEEe
Q 003205 112 RYNIH-AEL--IEPNASMGKECFEENVVECVFWGNGVVCVTEAN---R--YFCMADFATMKVCELARPEVEELPHCVAVI 183 (839)
Q Consensus 112 l~~~~-G~~--~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~---~--~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi 183 (839)
+||+. |+. .....+| ...|.++.|+++|..+++.+. + ...+++.... ...+. ++....+++
T Consensus 85 lWd~~~~~~~~~~~~~~~-----~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~-~~~l~----gh~~~v~~v- 153 (611)
T 1nr0_A 85 IWDTTQTTHILKTTIPVF-----SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS-NGNLT----GQARAMNSV- 153 (611)
T ss_dssp EEESSSTTCCEEEEEECS-----SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB-CBCCC----CCSSCEEEE-
T ss_pred EeECCCCcceeeEeeccc-----CCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCC-cceec----CCCCCceEE-
Confidence 99973 332 3344566 677999999999988877532 1 2334543221 11221 123333444
Q ss_pred CCCCCCCCc-EEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcccccc--
Q 003205 184 EPKYTMTGS-VEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDES-- 255 (839)
Q Consensus 184 ~~~~S~~~~-~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~-- 255 (839)
.|+|++. .++..+.|++|++|+..... ..|.++|..++|||||+++|+++.||+|++|+..-++.+..+.
T Consensus 154 --~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~ 231 (611)
T 1nr0_A 154 --DFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD 231 (611)
T ss_dssp --EECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCT
T ss_pred --EECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccc
Confidence 6778987 58888999999999976432 5688899999999999999999999999999865455544442
Q ss_pred -----CCCCCCCCceeee---------cCceEEEEecC---E-E------------------------------------
Q 003205 256 -----CESALPPEQIAWC---------GMDSVLLYWND---M-L------------------------------------ 281 (839)
Q Consensus 256 -----~~~~~~p~~~~Wc---------G~d~vv~~~~~---~-l------------------------------------ 281 (839)
.+ ...+..++|+ |.|..+..|+- . +
T Consensus 232 ~~~~~~h-~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~ 310 (611)
T 1nr0_A 232 SLKNVAH-SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 310 (611)
T ss_dssp TSSSCSS-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred ccccccc-CCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEe
Confidence 23 3355667775 56777777852 1 1
Q ss_pred --------EEEcCCCC--ceEeccCCCeEEeecCCc-eEEEccCcceeeeccc-hhhHhhhccCCC
Q 003205 282 --------VMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVP-ASTEQIFAIGST 335 (839)
Q Consensus 282 --------~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp-~~~~~vf~igS~ 335 (839)
.+.||.+. .+.|.+++..+++...|| ||+|.....+..+..+ .+...|..+..+
T Consensus 311 ~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s 376 (611)
T 1nr0_A 311 PELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 376 (611)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEEC
T ss_pred CCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEEC
Confidence 22355544 678888999999999999 9999988776665542 343344444333
No 9
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.81 E-value=9e-18 Score=182.43 Aligned_cols=256 Identities=12% Similarity=0.100 Sum_probs=185.7
Q ss_pred CCCEEEEcCCC-CeEEEEecCchhhhhhcccCCceEEEEcCC------CCceeEEEecCCCCCeEEEeecCCCe-EEEEE
Q 003205 34 SRNKVACAPFG-GPIAVIRDDSKIVQLYAESALRKLRIFNSA------GVLISETVWKNPGGRLIGMSWSEDQT-LICVV 105 (839)
Q Consensus 34 ~~~~va~sp~G-g~IA~~~d~~k~~~~~~~~~~~~I~iy~~~------G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~ 105 (839)
....++++|.+ ..+|+.+ .|++|++|+.. |.++.++..|. +.|.++.|+|++. |++++
T Consensus 19 ~V~~l~~~~~~~~~l~s~s------------~D~~v~~W~~~~~~~~~~~~~~~~~~h~--~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 19 WVTSLATSAGQPNLLLSAS------------RDKTLISWKLTGDDQKFGVPVRSFKGHS--HIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp CEEEEEECSSCTTEEEEEE------------TTSEEEEEEEEEETTEEEEEEEEEECCS--SCEEEEEECTTSSEEEEEE
T ss_pred eEEEEEccCCCccEEEEec------------CCccEEEecCCCCCccccccceEEeCCc--ccEEEEEECCCCCEEEEEe
Confidence 45688999976 6788776 68999999865 45678899998 9999999999997 58999
Q ss_pred eCCeEEEEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCceEEEcCCCCCCCCCceEEE-
Q 003205 106 QDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAV- 182 (839)
Q Consensus 106 ~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~~w~v- 182 (839)
.||+|++|++ .|+......+| ...|..+.+.++|..+++++.+ ...+|++.+.....+.. +.....++
T Consensus 85 ~D~~v~~wd~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~----h~~~v~~~~ 155 (319)
T 3frx_A 85 WDKTLRLWDVATGETYQRFVGH-----KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLG----HNDWVSQVR 155 (319)
T ss_dssp TTSEEEEEETTTTEEEEEEECC-----SSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECC----CSSCEEEEE
T ss_pred CCCEEEEEECCCCCeeEEEccC-----CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEec----cCCcEEEEE
Confidence 9999999996 57776667788 6789999999999888887543 45677776555444432 22222222
Q ss_pred eCC--CCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcccccc
Q 003205 183 IEP--KYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDES 255 (839)
Q Consensus 183 i~~--~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~ 255 (839)
..| ..++++..++..+.|++|++|+..... ..|..+|..+++||+|++||+++.||+|++|+..-.+.+..+.
T Consensus 156 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~ 235 (319)
T 3frx_A 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235 (319)
T ss_dssp ECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence 222 233466688999999999999988643 4688999999999999999999999999999977666665554
Q ss_pred CCCCCCCCceeeecCceEE--------EEe--cCE--EEEEcC---------CC--CceEeccCCCeEEeecCCc-eEEE
Q 003205 256 CESALPPEQIAWCGMDSVL--------LYW--NDM--LVMVAP---------QA--EPVQYFYDEPLVLIPECDG-VRIL 311 (839)
Q Consensus 256 ~~~~~~p~~~~WcG~d~vv--------~~~--~~~--l~lig~---------~~--~~v~f~~~~~~~l~~E~DG-vRIi 311 (839)
.+ ..+..++|+-+...+ ..| +.. +.-..+ .+ ..+.|++|+..+++...|| ||||
T Consensus 236 ~~--~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vW 313 (319)
T 3frx_A 236 AQ--DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313 (319)
T ss_dssp CC--SCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CC--CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEE
Confidence 43 356677776433222 122 221 111111 11 1578999999999999999 9999
Q ss_pred ccC
Q 003205 312 SNS 314 (839)
Q Consensus 312 t~~ 314 (839)
.-.
T Consensus 314 d~~ 316 (319)
T 3frx_A 314 QVM 316 (319)
T ss_dssp EEE
T ss_pred EEe
Confidence 754
No 10
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.80 E-value=1.1e-17 Score=183.43 Aligned_cols=259 Identities=14% Similarity=0.125 Sum_probs=182.1
Q ss_pred CCCEEEE-----cC-CCCeEEEEecCchhhhhhcccCCceEEEEcCC--------CCceeEEEecCCCCCeEEEeecCCC
Q 003205 34 SRNKVAC-----AP-FGGPIAVIRDDSKIVQLYAESALRKLRIFNSA--------GVLISETVWKNPGGRLIGMSWSEDQ 99 (839)
Q Consensus 34 ~~~~va~-----sp-~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~--------G~ll~ti~~~~~~~~I~~~~fs~de 99 (839)
....+++ +| +|..+|+.+ .|++|+||+.. |.++.++..|. +.|.++.|+|++
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs------------~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~--~~V~~~~~~~~~ 88 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGS------------RDKTVMIWKLYEEEQNGYFGIPHKALTGHN--HFVSDLALSQEN 88 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEE------------TTSCEEEEEECSSCCSSBSEEEEEEECCCS--SCEEEEEECSST
T ss_pred hhhheeeEEEeecCCCCCEEEEEc------------CCCEEEEEECCcCCcccccccccchhccCC--CceEEEEECCCC
Confidence 3456777 66 888999886 58999999964 45677888888 999999999998
Q ss_pred e-EEEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCceEEEcCCCCCCCC
Q 003205 100 T-LICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKVCELARPEVEEL 176 (839)
Q Consensus 100 ~-Lv~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~~~~l~~~~~~~~ 176 (839)
. +++++.||+|++|++ .|+......+| ...|..+.|+++|..+++.+. ....+|++.+.....+... .+..
T Consensus 89 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~h-----~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~ 162 (343)
T 2xzm_R 89 CFAISSSWDKTLRLWDLRTGTTYKRFVGH-----QSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK-ENHS 162 (343)
T ss_dssp TEEEEEETTSEEEEEETTSSCEEEEEECC-----CSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTT-TSCS
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEEcCC-----CCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecc-cCCC
Confidence 7 579999999999996 56766667788 678999999999877777643 2345666654333332211 0111
Q ss_pred CceEEE-eCCC------CCCCCcEEEEEEeCCeEEEEecCCcc----cccCCCceEEEECCCCcEEEEeecCCeEEEEec
Q 003205 177 PHCVAV-IEPK------YTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNT 245 (839)
Q Consensus 177 ~~~w~v-i~~~------~S~~~~~~v~~s~d~tv~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ss 245 (839)
....++ ..|. .+|.+..++..+.|++|++|+..+.. ..|.++|..++|||+|++||+++.||+|.+|+.
T Consensus 163 ~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 163 DWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242 (343)
T ss_dssp SCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEES
T ss_pred ceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 112222 2221 22334788999999999999966543 568889999999999999999999999999986
Q ss_pred -CCCCccccccCCCCCCCCceeee--------cCceEEEEecC------EE-EEE-----------cCCCC--ceEeccC
Q 003205 246 -NFSSPVIDESCESALPPEQIAWC--------GMDSVLLYWND------ML-VMV-----------APQAE--PVQYFYD 296 (839)
Q Consensus 246 -d~~~~l~e~~~~~~~~p~~~~Wc--------G~d~vv~~~~~------~l-~li-----------g~~~~--~v~f~~~ 296 (839)
........+... ..+..++|+ |.|..+..|+- .+ .+- |+.+. .+.|.++
T Consensus 243 ~~~~~~~~~~~~~--~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 320 (343)
T 2xzm_R 243 LNLTYPQREFDAG--STINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNAL 320 (343)
T ss_dssp SCCSSCSEEEECS--SCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSS
T ss_pred CCCcccceeecCC--CcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCC
Confidence 333333333222 235566665 44555556642 11 221 33333 6889999
Q ss_pred CCeEEeecCCc-eEEEccC
Q 003205 297 EPLVLIPECDG-VRILSNS 314 (839)
Q Consensus 297 ~~~~l~~E~DG-vRIit~~ 314 (839)
+..+++...|| ||+|..+
T Consensus 321 g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 321 GKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp SCCEEEEETTSEEEEEEEE
T ss_pred CCeEEEecCCceEEEEEEE
Confidence 99999999999 9999865
No 11
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.79 E-value=5.3e-17 Score=174.82 Aligned_cols=255 Identities=17% Similarity=0.187 Sum_probs=189.8
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVY 111 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~ 111 (839)
....++++|+|..+|+.. .+++|++|+. .|+.+.++..|. +.|.++.|+|+++ |++++.||+|+
T Consensus 25 ~v~~~~~s~~~~~l~s~~------------~dg~i~iw~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSS------------ADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSSDSNLLVSASDDKTLK 90 (312)
T ss_dssp CEEEEEECTTSSEEEEEE------------TTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEE
T ss_pred cEEEEEECCCCCEEEEee------------CCCeEEEEeCCCcccchhhccCC--CceEEEEEcCCCCEEEEECCCCEEE
Confidence 456899999999999986 5899999996 788888898888 8999999999987 57999999999
Q ss_pred EEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCce-EEEcCCCCCCCCCceEEEeCCCCC
Q 003205 112 RYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMK-VCELARPEVEELPHCVAVIEPKYT 188 (839)
Q Consensus 112 l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~-~~~l~~~~~~~~~~~w~vi~~~~S 188 (839)
+|++ .|+......+| ...|..+.+.++|..+++++. ....+|++.... ...+.. +.....++ .|+
T Consensus 91 vwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~---~~~ 158 (312)
T 4ery_A 91 IWDVSSGKCLKTLKGH-----SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA----HSDPVSAV---HFN 158 (312)
T ss_dssp EEETTTCCEEEEEECC-----SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC----CSSCEEEE---EEC
T ss_pred EEECCCCcEEEEEcCC-----CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC----CCCcEEEE---EEc
Confidence 9996 46666666677 667999999998888877643 234566665433 333332 22222333 466
Q ss_pred CCCcEEEEEEeCCeEEEEecCCcc------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCC-C
Q 003205 189 MTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESAL-P 261 (839)
Q Consensus 189 ~~~~~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~-~ 261 (839)
|+|..++..+.|++|++|+..... ..+..++..+++||+|+++++++.||+|.+|+..-.+.+..+..+... .
T Consensus 159 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 238 (312)
T 4ery_A 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238 (312)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSS
T ss_pred CCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceE
Confidence 799999999999999999987543 245667999999999999999999999999987656555555443211 0
Q ss_pred C----------CceeeecCceEEEEecC----E-EEEEcCCCC--ceEeccCCCeEEeec--CCc-eEEEccC
Q 003205 262 P----------EQIAWCGMDSVLLYWND----M-LVMVAPQAE--PVQYFYDEPLVLIPE--CDG-VRILSNS 314 (839)
Q Consensus 262 p----------~~~~WcG~d~vv~~~~~----~-l~lig~~~~--~v~f~~~~~~~l~~E--~DG-vRIit~~ 314 (839)
. .-+.=+|.|..+..|+- . -.+-|+.+. .+.|.+++..+++.. -|| ||||..+
T Consensus 239 ~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 0 12333467888888863 2 345566654 678888888887664 688 9999875
No 12
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.79 E-value=1.5e-17 Score=183.29 Aligned_cols=263 Identities=13% Similarity=0.120 Sum_probs=178.2
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-----CCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCe
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-----AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGT 109 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-----~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGt 109 (839)
...++++|+|..||..+|.+- .-.+..+.+|+. .........-+. +.|.++.|+||+.|++++.||+
T Consensus 33 v~~~~fs~dG~~l~~~sd~~~------r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~d~~l~~~s~dg~ 104 (344)
T 4gqb_B 33 LEAARYRSDGALLLGASSLSG------RCWAGSLWLFKDPCAAPNEGFCSAGVQTE--AGVADLTWVGERGILVASDSGA 104 (344)
T ss_dssp EEEEEECTTSCEEEEEECCSS------SCCCEEEEEESSGGGTTCGGGCSEEEEES--SCEEEEEEETTTEEEEEETTSE
T ss_pred EEEEEECCCCCEEEEEeCCce------EEeeceeeeeccccccCCcceeeeeeccC--CCEEEEEEeCCCeEEEEECCCE
Confidence 458899999999998874210 012444555542 111222222234 6799999999999999999999
Q ss_pred EEEEeCC-CCccc----cCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCceE-EEcCCCCCCCCCceEEE
Q 003205 110 VYRYNIH-AELIE----PNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMKV-CELARPEVEELPHCVAV 182 (839)
Q Consensus 110 v~l~~~~-G~~~~----~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~~-~~l~~~~~~~~~~~w~v 182 (839)
|++||+. |+... ...+| ...|..+.|+++|..+++++.+ .+.+|++.+... ..+.. +....+++
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H-----~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~----h~~~V~~~ 175 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEH-----DDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRA----HAAQVTCV 175 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECC-----SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC----CSSCEEEE
T ss_pred EEEEeccCCCceeEeeccccCC-----CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC----cCCceEEE
Confidence 9999864 54321 23477 6789999999999988887543 456777775443 33321 22233333
Q ss_pred eCCCCCCCCc-EEEEEEeCCeEEEEecCCcc-------cccCCCceEEEECCC-CcEEEEeecCCeEEEEecCCCCcccc
Q 003205 183 IEPKYTMTGS-VEVLIGTDAGILMLDEDGVQ-------KVDDTLSQKMAVSPN-GNFVACFTHDGRLVVNNTNFSSPVID 253 (839)
Q Consensus 183 i~~~~S~~~~-~~v~~s~d~tv~l~~~~~~~-------~~~~~~i~~ia~Spn-g~~iA~~~~~g~i~i~ssd~~~~l~e 253 (839)
.|++++. .++..+.|++|++||..... ..+...+..++++|+ ++++|+++.||+|++|+..-.+.+.+
T Consensus 176 ---~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~ 252 (344)
T 4gqb_B 176 ---AASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS 252 (344)
T ss_dssp ---EECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE
T ss_pred ---EecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE
Confidence 4566875 67788889999999987443 234456889999995 57899999999999999776777767
Q ss_pred ccCCCCCCCCceeee----------cCceEEEEecC----EEEEEcCCCC--ceEeccCCCeE-EeecCCc-eEEEccCc
Q 003205 254 ESCESALPPEQIAWC----------GMDSVLLYWND----MLVMVAPQAE--PVQYFYDEPLV-LIPECDG-VRILSNSS 315 (839)
Q Consensus 254 ~~~~~~~~p~~~~Wc----------G~d~vv~~~~~----~l~lig~~~~--~v~f~~~~~~~-l~~E~DG-vRIit~~~ 315 (839)
+..+. .....++|+ +.|..+..|+- .+.+.||.+. .+.|.+++..+ .+...|| |++|.-..
T Consensus 253 ~~~h~-~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 253 SAVHS-QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp EECCS-SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred EcCCC-CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 76652 344455554 56777788863 4667788775 78898887754 5667899 99998764
Q ss_pred cee
Q 003205 316 MEF 318 (839)
Q Consensus 316 ~~~ 318 (839)
-.+
T Consensus 332 ~~~ 334 (344)
T 4gqb_B 332 EPL 334 (344)
T ss_dssp ---
T ss_pred CCC
Confidence 333
No 13
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.78 E-value=2.9e-17 Score=181.60 Aligned_cols=260 Identities=14% Similarity=0.154 Sum_probs=182.2
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCC----ceeEEEecCCCCCeEEEeecCCCeEEEEEeCC
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGV----LISETVWKNPGGRLIGMSWSEDQTLICVVQDG 108 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~----ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dG 108 (839)
....|++||+|..+|+.++..- ...+++|++|+. .|. +......|. +.|.++.|+|++.+++++.||
T Consensus 44 ~V~~v~fSpDG~~las~s~d~~------~~wd~~v~~~~~~~~~~~~~~~~~~~~~~--~~V~~~~~s~d~~~l~~s~dg 115 (357)
T 4g56_B 44 QIGAVRYRRDGALLLAASSLSS------RTWGGSIWVFKDPEGAPNESLCTAGVQTE--AGVTDVAWVSEKGILVASDSG 115 (357)
T ss_dssp EEEEEEECSSSCEEEEEECSSS------SSCCEEEEEESSCC---CGGGCSEEEECS--SCEEEEEEETTTEEEEEETTS
T ss_pred CEEEEEECCCCCEEEEEcCCCC------ccccCeEEEEECCCCCcceeEecccCCCC--CCEEEEEEcCCCCEEEEECCC
Confidence 3468999999999999985321 114789999984 444 344455666 789999999999999999999
Q ss_pred eEEEEeCC-CCccc----cCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCceE-EEcCCCCCCCCCceEE
Q 003205 109 TVYRYNIH-AELIE----PNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKV-CELARPEVEELPHCVA 181 (839)
Q Consensus 109 tv~l~~~~-G~~~~----~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~~-~~l~~~~~~~~~~~w~ 181 (839)
+|++|++. |+... ...+| ...|..+.|+++|..+++++. ....+|+...... ..+.. +....++
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h-----~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~----h~~~v~~ 186 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEH-----DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA----HSSEVNC 186 (357)
T ss_dssp CEEEC--------CCCCEEECCC-----SSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECC----CSSCEEE
T ss_pred EEEEeeccccceeEEEeeccCCC-----CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC----CCCCEEE
Confidence 99999863 44321 23356 667999999999988888643 2455677765443 33321 2233344
Q ss_pred EeCCCCCCCCc-EEEEEEeCCeEEEEecCCcc-------cccCCCceEEEECCCC-cEEEEeecCCeEEEEecCCCCccc
Q 003205 182 VIEPKYTMTGS-VEVLIGTDAGILMLDEDGVQ-------KVDDTLSQKMAVSPNG-NFVACFTHDGRLVVNNTNFSSPVI 252 (839)
Q Consensus 182 vi~~~~S~~~~-~~v~~s~d~tv~l~~~~~~~-------~~~~~~i~~ia~Spng-~~iA~~~~~g~i~i~ssd~~~~l~ 252 (839)
+ .|++++. ..+..+.|++|++||..... ..+..++..++|||++ .++|+++.||+|++|+..-.+.+.
T Consensus 187 v---~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~ 263 (357)
T 4g56_B 187 V---AACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQ 263 (357)
T ss_dssp E---EECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCE
T ss_pred E---EEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeE
Confidence 4 4566775 67778889999999976432 2356679999999985 689999999999999876555555
Q ss_pred cccCCCCCCCCceeee----------cCceEEEEecC----EEEEEcCCCC--ceEecc-CCCeEEeecCCc-eEEEccC
Q 003205 253 DESCESALPPEQIAWC----------GMDSVLLYWND----MLVMVAPQAE--PVQYFY-DEPLVLIPECDG-VRILSNS 314 (839)
Q Consensus 253 e~~~~~~~~p~~~~Wc----------G~d~vv~~~~~----~l~lig~~~~--~v~f~~-~~~~~l~~E~DG-vRIit~~ 314 (839)
.+..+ ......++|+ +.|..|..|+- .+...|+.+. .+.|.+ ++..+++...|| ||||.-.
T Consensus 264 ~~~~~-~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 264 TSAVH-SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EECCC-SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EEecc-ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 55544 2234455554 56777888863 4667787765 788986 678888889999 9999854
No 14
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.78 E-value=1.1e-17 Score=198.51 Aligned_cols=288 Identities=11% Similarity=0.070 Sum_probs=189.2
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CC-------------------------------------
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AG------------------------------------- 75 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G------------------------------------- 75 (839)
....+++||+|..||+.. .|++|+||+. .|
T Consensus 61 ~v~~~~~spdg~~lasg~------------~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~ 128 (611)
T 1nr0_A 61 QTTVAKTSPSGYYCASGD------------VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 128 (611)
T ss_dssp CEEEEEECTTSSEEEEEE------------TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCS
T ss_pred ceEEEEECCCCcEEEEEe------------CCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCce
Confidence 456899999999999987 4667777764 22
Q ss_pred ---------CceeEEEecCCCCCeEEEeecCCCe--EEEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEEECC
Q 003205 76 ---------VLISETVWKNPGGRLIGMSWSEDQT--LICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWGN 143 (839)
Q Consensus 76 ---------~ll~ti~~~~~~~~I~~~~fs~de~--Lv~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~ 143 (839)
+.+.++..|. +.|.++.|+|++. |++++.||+|++|+. .|++.....+| ...|..++|+|+
T Consensus 129 ~~v~~wd~~~~~~~l~gh~--~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H-----~~~V~~v~fspd 201 (611)
T 1nr0_A 129 GHVFLFDTGTSNGNLTGQA--RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH-----TKFVHSVRYNPD 201 (611)
T ss_dssp EEEEETTTCCBCBCCCCCS--SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCC-----SSCEEEEEECTT
T ss_pred eEEEEeeCCCCcceecCCC--CCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccc-----cCceEEEEECCC
Confidence 2222233333 5677777777763 688889999999984 45555666778 678999999999
Q ss_pred eEEEEecCCe-EEEEecCCCc-eEEEcCCCCC---CCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc------
Q 003205 144 GVVCVTEANR-YFCMADFATM-KVCELARPEV---EELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------ 212 (839)
Q Consensus 144 G~v~~t~~~~-~~~v~~~~~~-~~~~l~~~~~---~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~------ 212 (839)
|..+++++.+ ...+|+.... ....+....+ ++....+++ .|||+|+.++..+.|++|++||.....
T Consensus 202 g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v---~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~ 278 (611)
T 1nr0_A 202 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL---TWSPDGTKIASASADKTIKIWNVATLKVEKTIP 278 (611)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEE---EECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEE---EECCCCCEEEEEeCCCeEEEEeCCCCceeeeec
Confidence 9888886542 3456665533 3333422111 122233444 678899999999999999999976321
Q ss_pred ------------------------------------------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCc
Q 003205 213 ------------------------------------------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSP 250 (839)
Q Consensus 213 ------------------------------------------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~ 250 (839)
.+|..+|..++|||||++||+++.||+|++|+..-...
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~ 358 (611)
T 1nr0_A 279 VGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS 358 (611)
T ss_dssp CCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Confidence 24677899999999999999999999999998664433
Q ss_pred ccccc-CCCCCCCCceeee--------cCceEEEEec-------------------------------------CEEEE-
Q 003205 251 VIDES-CESALPPEQIAWC--------GMDSVLLYWN-------------------------------------DMLVM- 283 (839)
Q Consensus 251 l~e~~-~~~~~~p~~~~Wc--------G~d~vv~~~~-------------------------------------~~l~l- 283 (839)
...+. .+ ......+.|. +.|..+..|+ ..+.+
T Consensus 359 ~~~~~~~h-~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~ 437 (611)
T 1nr0_A 359 NRVFPDVH-ATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 437 (611)
T ss_dssp EECSSCSC-SSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEE
T ss_pred eeecccCC-cceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEE
Confidence 32221 11 1122233332 2222233332 11111
Q ss_pred -------EcCCC--CceEeccCCCeEEeecCCc-eEEEccCccee--eeccchhhHhhhccCCCChhhhHHHHH
Q 003205 284 -------VAPQA--EPVQYFYDEPLVLIPECDG-VRILSNSSMEF--LQRVPASTEQIFAIGSTSPAALLYDAL 345 (839)
Q Consensus 284 -------ig~~~--~~v~f~~~~~~~l~~E~DG-vRIit~~~~~~--l~~Vp~~~~~vf~igS~~pga~L~~A~ 345 (839)
+.+.. ..+.|++|+..+++...|| ||||..+...+ +.. ..+...|..+.+++.|.+|+.+.
T Consensus 438 ~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s 510 (611)
T 1nr0_A 438 SHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATD 510 (611)
T ss_dssp ETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEE
T ss_pred eCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEc
Confidence 11111 2578889999999999998 99998765433 333 56777788888888888876553
No 15
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.78 E-value=6.3e-18 Score=188.33 Aligned_cols=262 Identities=10% Similarity=0.089 Sum_probs=189.0
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeE
Q 003205 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTV 110 (839)
Q Consensus 33 l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv 110 (839)
-..+.++++|+|..||+.+ .|++|+||+. .|+.+.++..|. ..|.++.|+|+++ |++++.||++
T Consensus 67 ~~V~~~~~sp~~~~l~s~s------------~D~~v~iWd~~~~~~~~~~~~h~--~~v~~~~~s~~g~~las~~~d~~v 132 (380)
T 3iz6_a 67 GKVYSLDWTPEKNWIVSAS------------QDGRLIVWNALTSQKTHAIKLHC--PWVMECAFAPNGQSVACGGLDSAC 132 (380)
T ss_dssp SCEEEEEECTTSSCEEEEE------------TTSEEEEEETTTTEEEEEEECCC--TTCCCCEECTTSSEEEECCSSSCC
T ss_pred cEEEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCccceEEecCC--CCEEEEEECCCCCEEEEeeCCCcE
Confidence 3567899999999999987 5899999995 788999999998 8999999999998 5799999999
Q ss_pred EEEeCCC------Cc--cccCCCCCccccccCeEEEEEECC-eEEEEecCC-eEEEEecCCCceE-EEcCCC-CCCCCCc
Q 003205 111 YRYNIHA------EL--IEPNASMGKECFEENVVECVFWGN-GVVCVTEAN-RYFCMADFATMKV-CELARP-EVEELPH 178 (839)
Q Consensus 111 ~l~~~~G------~~--~~~~~g~~~~~~~~~V~~~~~~~~-G~v~~t~~~-~~~~v~~~~~~~~-~~l~~~-~~~~~~~ 178 (839)
++|++.. +. .....|| ...|..+.+.++ +..++|++. ....+|++..... ..+... +.++...
T Consensus 133 ~iw~~~~~~~~~~~~~~~~~~~gh-----~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~ 207 (380)
T 3iz6_a 133 SIFNLSSQADRDGNMPVSRVLTGH-----KGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD 207 (380)
T ss_dssp EEEECCCCSSCCCSSTTCCBCCCC-----SSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSC
T ss_pred EEEECCCCccccCCccceeeccCC-----CcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccC
Confidence 9998742 22 3345677 566788888874 444556543 3456777765433 233211 1112222
Q ss_pred eEEEeCCCC-CCCCcEEEEEEeCCeEEEEecCCc-c-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcc
Q 003205 179 CVAVIEPKY-TMTGSVEVLIGTDAGILMLDEDGV-Q-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPV 251 (839)
Q Consensus 179 ~w~vi~~~~-S~~~~~~v~~s~d~tv~l~~~~~~-~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l 251 (839)
..++ .+ +++++.++..+.|++|++||.... . ..|.++|..++|||+|+++|+++.||+|++|+..-++.+
T Consensus 208 v~~~---~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~ 284 (380)
T 3iz6_a 208 VLSL---SINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL 284 (380)
T ss_dssp EEEE---EECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEE
T ss_pred eEEE---EeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEE
Confidence 2222 22 238899999999999999997622 1 568899999999999999999999999999987655555
Q ss_pred ccccCCCC------CCCCceeee---------cCceEEEEecC----EE-EE----EcCCCC--ceEeccCCCeEEeecC
Q 003205 252 IDESCESA------LPPEQIAWC---------GMDSVLLYWND----ML-VM----VAPQAE--PVQYFYDEPLVLIPEC 305 (839)
Q Consensus 252 ~e~~~~~~------~~p~~~~Wc---------G~d~vv~~~~~----~l-~l----ig~~~~--~v~f~~~~~~~l~~E~ 305 (839)
..+..+.. .....++|. +.|..+..|+- .+ .+ .|+.+. .+.|++++..+++...
T Consensus 285 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~ 364 (380)
T 3iz6_a 285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW 364 (380)
T ss_dssp EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECT
T ss_pred EEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeC
Confidence 44433211 123456665 45667777863 22 22 345553 6889999999999999
Q ss_pred Cc-eEEEccCcc
Q 003205 306 DG-VRILSNSSM 316 (839)
Q Consensus 306 DG-vRIit~~~~ 316 (839)
|| ||||.-..+
T Consensus 365 D~~i~iW~~~~~ 376 (380)
T 3iz6_a 365 DKNLKIWAFSGH 376 (380)
T ss_dssp TSCEEEEECCSS
T ss_pred CCCEEEEecCCC
Confidence 99 999987754
No 16
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.78 E-value=3.5e-17 Score=180.60 Aligned_cols=256 Identities=12% Similarity=0.097 Sum_probs=187.3
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeE
Q 003205 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTV 110 (839)
Q Consensus 33 l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv 110 (839)
-....++++|+|..||+.+ .|++|+||+ ..|+...++..+. ..|.++.|+|++. +++++.||++
T Consensus 65 ~~V~~~~~s~d~~~l~s~s------------~Dg~v~vWd~~~~~~~~~~~~~~--~~v~~~~~sp~g~~lasg~~d~~i 130 (354)
T 2pbi_B 65 NKVLCMDWCKDKRRIVSSS------------QDGKVIVWDSFTTNKEHAVTMPC--TWVMACAYAPSGCAIACGGLDNKC 130 (354)
T ss_dssp SCEEEEEECTTSSEEEEEE------------TTSEEEEEETTTCCEEEEEECSS--SCCCEEEECTTSSEEEEESTTSEE
T ss_pred CeEEEEEECCCCCEEEEEe------------CCCeEEEEECCCCCcceEEecCC--CCEEEEEECCCCCEEEEeeCCCCE
Confidence 3567899999999999987 589999999 5788888898887 8999999999998 5799999999
Q ss_pred EEEeCCCC-------ccccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCce-EEEcCCCCCCCCCceEE
Q 003205 111 YRYNIHAE-------LIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMK-VCELARPEVEELPHCVA 181 (839)
Q Consensus 111 ~l~~~~G~-------~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~-~~~l~~~~~~~~~~~w~ 181 (839)
++|++... ......+| ...|..+.|+++|..++|.+. ....+|++.... ...+.. +.....+
T Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~----h~~~v~~ 201 (354)
T 2pbi_B 131 SVYPLTFDKNENMAAKKKSVAMH-----TNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG----HGADVLC 201 (354)
T ss_dssp EEEECCCCTTCCSGGGCEEEEEC-----SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC----CSSCEEE
T ss_pred EEEEEeccccccccccceeeecc-----CCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC----CCCCeEE
Confidence 99976421 12223345 567889999998877777644 355677776543 333332 2222222
Q ss_pred EeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccC
Q 003205 182 VIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESC 256 (839)
Q Consensus 182 vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~ 256 (839)
+ .-..+++|+.++..+.|++|++||..... ..|..+|..++|||+|+.+|+++.||++++|+..-.+.+..+..
T Consensus 202 ~-~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~ 280 (354)
T 2pbi_B 202 L-DLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK 280 (354)
T ss_dssp E-EECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred E-EEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 2 11223468899999999999999977543 56788999999999999999999999999998654444433332
Q ss_pred CC-CCCCCceeee---------cCceEEEEecC-----EEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEc
Q 003205 257 ES-ALPPEQIAWC---------GMDSVLLYWND-----MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILS 312 (839)
Q Consensus 257 ~~-~~~p~~~~Wc---------G~d~vv~~~~~-----~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit 312 (839)
+. ...+..+.|. ++|..+..|+- ...+.|+.+. .+.|.+++..+++...|| ||||+
T Consensus 281 ~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 281 ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 21 1123455554 46677777852 3356677765 788999999999999999 99984
No 17
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.77 E-value=6.9e-17 Score=176.24 Aligned_cols=270 Identities=9% Similarity=0.039 Sum_probs=191.0
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeE
Q 003205 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTV 110 (839)
Q Consensus 33 l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv 110 (839)
-....++++|+|..+|+.. .++.|+||+ .+|+.+.++..|. +.|.++.|+|++. |++++.||+|
T Consensus 33 ~~v~~~~~s~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~~~dg~i 98 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCS------------KDSSASVWYSLNGERLGTLDGHT--GTIWSIDVDCFTKYCVTGSADYSI 98 (369)
T ss_dssp SCEEEEEECTTSCEEEEEE------------SSSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTTEE
T ss_pred ceEEEEEEcCCCCEEEEEe------------CCCEEEEEeCCCchhhhhhhhcC--CcEEEEEEcCCCCEEEEEeCCCeE
Confidence 3556899999999999986 589999999 6889999999888 9999999999987 6899999999
Q ss_pred EEEeCC-CCccccCCCCCccccccCeEEEEEECCeEEEEecCC------eEEEEecCCCc----eEEEcCCCCCC---CC
Q 003205 111 YRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN------RYFCMADFATM----KVCELARPEVE---EL 176 (839)
Q Consensus 111 ~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~------~~~~v~~~~~~----~~~~l~~~~~~---~~ 176 (839)
++|++. |+...... + ...|..+.+.++|..+++... ....++++... ........... ..
T Consensus 99 ~iwd~~~~~~~~~~~-~-----~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
T 3zwl_B 99 KLWDVSNGQCVATWK-S-----PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH 172 (369)
T ss_dssp EEEETTTCCEEEEEE-C-----SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred EEEECCCCcEEEEee-c-----CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence 999975 55433222 4 567899999998877777532 22333333211 01111100000 00
Q ss_pred CceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCC-cc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCc
Q 003205 177 PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDG-VQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSP 250 (839)
Q Consensus 177 ~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~-~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~ 250 (839)
...-.+....|+|++..++..+.|++|++|+... .. ..+.+++..+++||+|+++++++.||+|.+|+..-.+.
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 252 (369)
T 3zwl_B 173 EGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV 252 (369)
T ss_dssp TTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred cCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCce
Confidence 0000122224677999999999999999999886 22 46788999999999999999999999999999876666
Q ss_pred cccccCCCCCCCCceeeecCce-----------------------EEEEecC-----EEEEEcCCCC--ceEeccCCCeE
Q 003205 251 VIDESCESALPPEQIAWCGMDS-----------------------VLLYWND-----MLVMVAPQAE--PVQYFYDEPLV 300 (839)
Q Consensus 251 l~e~~~~~~~~p~~~~WcG~d~-----------------------vv~~~~~-----~l~lig~~~~--~v~f~~~~~~~ 300 (839)
+..+... ..+..+.|..+.. .+..|+. ...+.|+.+. .+.|.+++..+
T Consensus 253 ~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 330 (369)
T 3zwl_B 253 LKKYETD--CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSY 330 (369)
T ss_dssp EEEEECS--SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred eeeecCC--CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEE
Confidence 6665532 3455666653222 3344432 2345566655 68898899999
Q ss_pred EeecCCc-eEEEccCcceeeeccch
Q 003205 301 LIPECDG-VRILSNSSMEFLQRVPA 324 (839)
Q Consensus 301 l~~E~DG-vRIit~~~~~~l~~Vp~ 324 (839)
++...|| |+||.-+...+..+.+.
T Consensus 331 ~s~~~dg~v~iw~~~~~~~~~~~~~ 355 (369)
T 3zwl_B 331 ASGGEDGFIRLHHFEKSYFDFKYDV 355 (369)
T ss_dssp EEEETTSEEEEEEECHHHHTCCCHH
T ss_pred EEEcCCCeEEEEECccccchhHHHH
Confidence 9999999 99999987766655543
No 18
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.76 E-value=1e-16 Score=179.28 Aligned_cols=254 Identities=14% Similarity=0.109 Sum_probs=178.9
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCC----------------CCCeEEEeec
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNP----------------GGRLIGMSWS 96 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~----------------~~~I~~~~fs 96 (839)
....+++||+|..+|+.. +++++||+ .+|+++.++..+.. ...|.++.|+
T Consensus 66 ~V~~v~fspdg~~la~g~-------------~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGC-------------NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp CCCEEEECTTSSEEEEEC-------------BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC
T ss_pred EEEEEEECCCCCEEEEEc-------------CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEEC
Confidence 457899999999999874 46899999 57888888765531 0138999999
Q ss_pred CCCe-EEEEEeCCeEEEEeCC-CCccccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCceEE-EcCCCC
Q 003205 97 EDQT-LICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKVC-ELARPE 172 (839)
Q Consensus 97 ~de~-Lv~v~~dGtv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~~~-~l~~~~ 172 (839)
||++ |++++.||+|++|++. |+......+| ...|..+.|+++|..+++++. ....+|++...... .+.
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h-----~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--- 204 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENRKIVMILQGH-----EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS--- 204 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECCC-----SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEEEEccC-----CCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE---
Confidence 9997 5799999999999975 5556666778 678999999999888777654 34567777654332 222
Q ss_pred CCCCCceEEEeCCCCCC-CCcEEEEEEeCCeEEEEecCCcc------------cccCCCceEEEECCCCcEEEEeecCCe
Q 003205 173 VEELPHCVAVIEPKYTM-TGSVEVLIGTDAGILMLDEDGVQ------------KVDDTLSQKMAVSPNGNFVACFTHDGR 239 (839)
Q Consensus 173 ~~~~~~~w~vi~~~~S~-~~~~~v~~s~d~tv~l~~~~~~~------------~~~~~~i~~ia~Spng~~iA~~~~~g~ 239 (839)
......++ .++| +|..++..+.|++|.+||..... ..|.++|..++|||+|++||+++.||+
T Consensus 205 --~~~~v~~~---~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~ 279 (393)
T 1erj_A 205 --IEDGVTTV---AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279 (393)
T ss_dssp --CSSCEEEE---EECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred --cCCCcEEE---EEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 11111222 3455 88999999999999999976432 246788999999999999999999999
Q ss_pred EEEEecCCCC------------ccccccCCCCCCCCceee---------ecCceEEEEecC-----EEEEEcCCCC--ce
Q 003205 240 LVVNNTNFSS------------PVIDESCESALPPEQIAW---------CGMDSVLLYWND-----MLVMVAPQAE--PV 291 (839)
Q Consensus 240 i~i~ssd~~~------------~l~e~~~~~~~~p~~~~W---------cG~d~vv~~~~~-----~l~lig~~~~--~v 291 (839)
|.+|+..-.. ....+..+ ......++| +|.|..+..|+- ...+-|+.+. .+
T Consensus 280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v 358 (393)
T 1erj_A 280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGH-KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358 (393)
T ss_dssp EEEEEC---------------CEEEEEECC-SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEEECCCCCCcccccCCCCCcceEEEecc-cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEE
Confidence 9999854211 11122222 122334444 367778888863 3456677765 45
Q ss_pred Eecc------CCCeEEeecCCc-eEEEccC
Q 003205 292 QYFY------DEPLVLIPECDG-VRILSNS 314 (839)
Q Consensus 292 ~f~~------~~~~~l~~E~DG-vRIit~~ 314 (839)
.|.. ++..+++...|| ||||.-.
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 5543 466788888999 9999765
No 19
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.76 E-value=2.8e-17 Score=185.14 Aligned_cols=260 Identities=11% Similarity=0.118 Sum_probs=197.0
Q ss_pred EEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEEECCeEE
Q 003205 69 RIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVV 146 (839)
Q Consensus 69 ~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v 146 (839)
..|.+......++..|. +.|.++.|+|++. |++++.||+|++||+ .|+......+| ...|.++.|.++|..
T Consensus 92 ~~~~~~~~~~~~l~gh~--~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h-----~~~V~~v~~~~~~~~ 164 (410)
T 1vyh_C 92 KEWIPRPPEKYALSGHR--SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH-----TDSVQDISFDHSGKL 164 (410)
T ss_dssp CCCCCCSSCSCEEECCS--SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCC-----SSCEEEEEECTTSSE
T ss_pred cccccCCCceEeecccC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEecc-----CCcEEEEEEcCCCCE
Confidence 34555566677788898 9999999999987 589999999999996 57777777788 778999999999988
Q ss_pred EEecCCe-EEEEecCCCceE-EEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCc
Q 003205 147 CVTEANR-YFCMADFATMKV-CELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLS 219 (839)
Q Consensus 147 ~~t~~~~-~~~v~~~~~~~~-~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i 219 (839)
+++++.+ ...+|++.+... ..+.. +....+++ .|+|+|+.++..+.|++|++||..... ..+...+
T Consensus 165 l~sgs~D~~i~iwd~~~~~~~~~~~~----h~~~V~~v---~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v 237 (410)
T 1vyh_C 165 LASCSADMTIKLWDFQGFECIRTMHG----HDHNVSSV---SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV 237 (410)
T ss_dssp EEEEETTSCCCEEETTSSCEEECCCC----CSSCEEEE---EECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred EEEEeCCCeEEEEeCCCCceeEEEcC----CCCCEEEE---EEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccE
Confidence 8886543 345666664433 22221 22333444 566799999999999999999987443 5678889
Q ss_pred eEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceee-----------------------------ecC
Q 003205 220 QKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAW-----------------------------CGM 270 (839)
Q Consensus 220 ~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~W-----------------------------cG~ 270 (839)
..++++|+|+++|+++.||+|.+|+..-.+...++..+. ..+..+.| ++.
T Consensus 238 ~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~ 316 (410)
T 1vyh_C 238 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR-HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316 (410)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCC-ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC
Confidence 999999999999999999999999876555554444331 12223333 457
Q ss_pred ceEEEEecC-----EEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEccCcceeeeccchhhHhhhccCCCChhhhHH
Q 003205 271 DSVLLYWND-----MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLY 342 (839)
Q Consensus 271 d~vv~~~~~-----~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~~~~vf~igS~~pga~L~ 342 (839)
|..+..|+- ...+.|+.+. .+.|.+++..+++...|| ||||.....+.+..+..|...|..+..++.+.+|+
T Consensus 317 D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 396 (410)
T 1vyh_C 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV 396 (410)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEE
T ss_pred CCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEE
Confidence 788888863 3466777765 688999999999999999 99999998999999988888888887777665554
Q ss_pred H
Q 003205 343 D 343 (839)
Q Consensus 343 ~ 343 (839)
.
T Consensus 397 s 397 (410)
T 1vyh_C 397 T 397 (410)
T ss_dssp E
T ss_pred E
Confidence 3
No 20
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.76 E-value=1.4e-17 Score=181.41 Aligned_cols=256 Identities=11% Similarity=0.138 Sum_probs=193.0
Q ss_pred CCCCceeEEEecCCCCCeEEEeecCC----C-eEEEEEeCCeEEEEeCCCC-c--cccCCCCCccccccCeEEEEEECCe
Q 003205 73 SAGVLISETVWKNPGGRLIGMSWSED----Q-TLICVVQDGTVYRYNIHAE-L--IEPNASMGKECFEENVVECVFWGNG 144 (839)
Q Consensus 73 ~~G~ll~ti~~~~~~~~I~~~~fs~d----e-~Lv~v~~dGtv~l~~~~G~-~--~~~~~g~~~~~~~~~V~~~~~~~~G 144 (839)
..|.++.+...|. +.|.++.|+|+ + .|++++.||+|++|++... . .....|| ...|..+.+.++|
T Consensus 20 ~~g~~~~~~~~H~--~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh-----~~~v~~~~~~~~~ 92 (321)
T 3ow8_A 20 QYGILFKQEQAHD--DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGH-----QLGVVSVDISHTL 92 (321)
T ss_dssp -CEEEEEETTSSS--SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCC-----SSCEEEEEECSSS
T ss_pred hhhheeeecccCC--CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccC-----CCCEEEEEECCCC
Confidence 4566677777888 99999999985 3 3789999999999986533 2 2235677 7789999999999
Q ss_pred EEEEecCC-eEEEEecCCCce-EEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCC
Q 003205 145 VVCVTEAN-RYFCMADFATMK-VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDT 217 (839)
Q Consensus 145 ~v~~t~~~-~~~~v~~~~~~~-~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~ 217 (839)
..+++++. ....+|++.... ...+.. .....|++ .|||+|+.++..+.+++|.+|+..... ..+..
T Consensus 93 ~~l~s~s~D~~i~lWd~~~~~~~~~~~~----~~~~~~~~---~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~ 165 (321)
T 3ow8_A 93 PIAASSSLDAHIRLWDLENGKQIKSIDA----GPVDAWTL---AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK 165 (321)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEEC----CTTCCCCE---EECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSS
T ss_pred CEEEEEeCCCcEEEEECCCCCEEEEEeC----CCccEEEE---EECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCc
Confidence 88888754 345677776543 333322 22223333 567799999999999999999987543 35667
Q ss_pred CceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeee---------cCceEEEEecC-----EEEE
Q 003205 218 LSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC---------GMDSVLLYWND-----MLVM 283 (839)
Q Consensus 218 ~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~Wc---------G~d~vv~~~~~-----~l~l 283 (839)
.+..+++||+|++||+++.||+|++|+..-.+.+.++..+ ...+..+.|+ +.|..+..|+- .-.+
T Consensus 166 ~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~ 244 (321)
T 3ow8_A 166 FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH-AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL 244 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccc-CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE
Confidence 8999999999999999999999999997766666666655 3456677775 56777777852 3356
Q ss_pred EcCCCC--ceEeccCCCeEEeecCCc-eEEEccCcceeeeccchhhHhhhccCCCChhhhHHH
Q 003205 284 VAPQAE--PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYD 343 (839)
Q Consensus 284 ig~~~~--~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~~~~vf~igS~~pga~L~~ 343 (839)
.|+.+. .+.|.+++..+++...|| ||||.....+.++.+..+...|..+..++.+..|+.
T Consensus 245 ~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s 307 (321)
T 3ow8_A 245 SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVS 307 (321)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEE
Confidence 667665 688999999999999999 999999999999999999888888887777766554
No 21
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.75 E-value=5.6e-17 Score=180.59 Aligned_cols=286 Identities=12% Similarity=0.139 Sum_probs=202.6
Q ss_pred CCCEEEEcCCCC-eEEEEecCchhhhhhcccCCceEEEEcC-----CCC------ceeEEEe----------cCCCCCeE
Q 003205 34 SRNKVACAPFGG-PIAVIRDDSKIVQLYAESALRKLRIFNS-----AGV------LISETVW----------KNPGGRLI 91 (839)
Q Consensus 34 ~~~~va~sp~Gg-~IA~~~d~~k~~~~~~~~~~~~I~iy~~-----~G~------ll~ti~~----------~~~~~~I~ 91 (839)
....++++|+|. .+|+.. .++.|++|+. +|+ ....+.. |. +.|.
T Consensus 47 ~v~~~~~s~~~~~~l~~~~------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~ 112 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGE------------KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTT--NQVT 112 (425)
T ss_dssp CCSEEEECSSCTTEEEEEE------------TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------C--BCEE
T ss_pred ceEEEEECCCCCcEEEEec------------CCceEEEEEEecccCCccccccccccccccccccccccccCCC--CceE
Confidence 456899999999 999886 5799999997 456 3555554 34 6899
Q ss_pred EEeecCCCe-EEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCce-EEEc
Q 003205 92 GMSWSEDQT-LICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMK-VCEL 168 (839)
Q Consensus 92 ~~~fs~de~-Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~-~~~l 168 (839)
++.|+|++. |++++.||+|++|+..|+......+| ...|..+.+.++|..+++.+. ....++++.... ...+
T Consensus 113 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 187 (425)
T 1r5m_A 113 CLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFH-----RAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHF 187 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCC-----CSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCC-----CccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe
Confidence 999999997 58999999999999888887666677 677999999998876666532 233456665433 2333
Q ss_pred CCCCCCCCCce----------EEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEE
Q 003205 169 ARPEVEELPHC----------VAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVAC 233 (839)
Q Consensus 169 ~~~~~~~~~~~----------w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~ 233 (839)
.... ..... -.+....|+++ ..++..+.++.|++|+..... ..+.+++..+++||+|+++++
T Consensus 188 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 188 ELKE--TGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp CCC-----------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEE
T ss_pred eccc--cCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEE
Confidence 2111 01000 00222334555 457778889999999988643 467889999999999999999
Q ss_pred eecCCeEEEEecCCCCccccccCCCCCCCCceeee--------cCceEEEEecC-----EEEEEcCCCC--ceEeccCCC
Q 003205 234 FTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC--------GMDSVLLYWND-----MLVMVAPQAE--PVQYFYDEP 298 (839)
Q Consensus 234 ~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~Wc--------G~d~vv~~~~~-----~l~lig~~~~--~v~f~~~~~ 298 (839)
++.+|+|.+|+..-.+.+..+..+ ...+..+.|+ +.|..+..|+- ...+.++.+. .+.|.+++.
T Consensus 265 ~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~ 343 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGNSQNCFYGH-SQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQ 343 (425)
T ss_dssp EETTSCEEEECSSSBSCSEEECCC-SSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSS
T ss_pred EcCCCEEEEEECCCCccceEecCC-CccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCC
Confidence 999999999987756666566544 3355677776 34555555652 2234444443 678888899
Q ss_pred eEEeecCCc-eEEEccCcce--------------------eeeccchhhH--hhhccCCCChhhhHH
Q 003205 299 LVLIPECDG-VRILSNSSME--------------------FLQRVPASTE--QIFAIGSTSPAALLY 342 (839)
Q Consensus 299 ~~l~~E~DG-vRIit~~~~~--------------------~l~~Vp~~~~--~vf~igS~~pga~L~ 342 (839)
.+++...|| |+||...... .+..++.+.. .|..+..++.+.+|+
T Consensus 344 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 410 (425)
T 1r5m_A 344 KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKIS 410 (425)
T ss_dssp EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEE
T ss_pred EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEE
Confidence 999999998 9999998888 8888888765 777776666665543
No 22
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.75 E-value=2.4e-17 Score=182.91 Aligned_cols=190 Identities=13% Similarity=0.187 Sum_probs=136.5
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCeEE-EEEeCCeEEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLI-CVVQDGTVYR 112 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~Lv-~v~~dGtv~l 112 (839)
...|++||+|..+|++.. +.|++|+||+. +|+.+.++. +. +.|.++.|+|||+++ +++.|+++.+
T Consensus 136 ~~~v~fSpDg~~la~as~----------~~d~~i~iwd~~~~~~~~~~~-~~--~~V~~v~fspdg~~l~s~s~~~~~~~ 202 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASS----------KVPAIMRIIDPSDLTEKFEIE-TR--GEVKDLHFSTDGKVVAYITGSSLEVI 202 (365)
T ss_dssp EEEEEECTTSSCEEEEES----------CSSCEEEEEETTTTEEEEEEE-CS--SCCCEEEECTTSSEEEEECSSCEEEE
T ss_pred EEEEEEcCCCCEEEEEEC----------CCCCEEEEeECCCCcEEEEeC-CC--CceEEEEEccCCceEEeccceeEEEE
Confidence 347999999999998762 36899999995 678888886 55 789999999999975 5555554444
Q ss_pred EeCCCCcc--ccCCCCCccccccCeEEEEEECCeEEEEecC--C--e-EEEEecCCCceEEEcCCCCC-CCCCceEEEeC
Q 003205 113 YNIHAELI--EPNASMGKECFEENVVECVFWGNGVVCVTEA--N--R-YFCMADFATMKVCELARPEV-EELPHCVAVIE 184 (839)
Q Consensus 113 ~~~~G~~~--~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~--~--~-~~~v~~~~~~~~~~l~~~~~-~~~~~~w~vi~ 184 (839)
|...|+.. ....+| ...|..++|+++|..+++.+ + . ....++.............+ +.....+++
T Consensus 203 ~~~~~~~~~~~~~~~~-----~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~-- 275 (365)
T 4h5i_A 203 STVTGSCIARKTDFDK-----NWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSM-- 275 (365)
T ss_dssp ETTTCCEEEEECCCCT-----TEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEE--
T ss_pred EeccCcceeeeecCCC-----CCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeE--
Confidence 45677753 344556 56789999999998888753 2 1 22334433222111100000 012222333
Q ss_pred CCCCCCCcEEEEEEeCCeEEEEecCCcc------cccCCCceEEEECCCCcEEEEeecCCeEEEEec
Q 003205 185 PKYTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNT 245 (839)
Q Consensus 185 ~~~S~~~~~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ss 245 (839)
.|||||+.++.++.|++|++||..... .+|.++|..|+|||||++||+++.|++|+||+.
T Consensus 276 -~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 276 -DVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp -EECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred -EECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 678899999999999999999987432 468899999999999999999999999999984
No 23
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.74 E-value=2.3e-16 Score=190.02 Aligned_cols=257 Identities=12% Similarity=0.115 Sum_probs=183.6
Q ss_pred CCCEEEEcCCC-CeEEEEecCchhhhhhcccCCceEEEEcCC------CCceeEEEecCCCCCeEEEeecCCCe-EEEEE
Q 003205 34 SRNKVACAPFG-GPIAVIRDDSKIVQLYAESALRKLRIFNSA------GVLISETVWKNPGGRLIGMSWSEDQT-LICVV 105 (839)
Q Consensus 34 ~~~~va~sp~G-g~IA~~~d~~k~~~~~~~~~~~~I~iy~~~------G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~ 105 (839)
....++++|++ ..||+.+ .|++|+||+.. |....++..|. +.|.++.|+|+++ |++++
T Consensus 384 ~V~~v~~~~~~~~~l~s~s------------~D~~i~~W~~~~~~~~~~~~~~~~~~h~--~~v~~v~~s~~g~~l~sgs 449 (694)
T 3dm0_A 384 MVTAIATPIDNADIIVSAS------------RDKSIILWKLTKDDKAYGVAQRRLTGHS--HFVEDVVLSSDGQFALSGS 449 (694)
T ss_dssp CEEEEECCTTCCSEEEEEE------------TTSEEEEEECCCSTTCSCEEEEEEECCS--SCEEEEEECTTSSEEEEEE
T ss_pred eeEEEEecCCCCCEEEEEe------------CCCcEEEEEccCCCcccccccceecCCC--CcEEEEEECCCCCEEEEEe
Confidence 45678888876 4677775 68999999864 34567788898 9999999999998 57999
Q ss_pred eCCeEEEEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCceEEEcCCCCCCCCCceEEEe
Q 003205 106 QDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKVCELARPEVEELPHCVAVI 183 (839)
Q Consensus 106 ~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi 183 (839)
.||+|++|++ .|+......+| ...|.++.|+++|..++|++. ....+|+..+.....+.....++.....++
T Consensus 450 ~Dg~v~vwd~~~~~~~~~~~~h-----~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~- 523 (694)
T 3dm0_A 450 WDGELRLWDLAAGVSTRRFVGH-----TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCV- 523 (694)
T ss_dssp TTSEEEEEETTTTEEEEEEECC-----SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEE-
T ss_pred CCCcEEEEECCCCcceeEEeCC-----CCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEE-
Confidence 9999999996 45556667788 678999999999887777654 245567665444334432111122222333
Q ss_pred CCCCCCCC--cEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccC
Q 003205 184 EPKYTMTG--SVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESC 256 (839)
Q Consensus 184 ~~~~S~~~--~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~ 256 (839)
.|||++ ..++..+.|++|++||..+.. ..|.++|..+++||+|+++|+++.||+|++|+..-.+.+..+..
T Consensus 524 --~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~ 601 (694)
T 3dm0_A 524 --RFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA 601 (694)
T ss_dssp --EECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC
T ss_pred --EEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC
Confidence 456676 578888899999999988654 56889999999999999999999999999999765666655443
Q ss_pred CCCCCCCceeeec--------CceEEEEecC---E-EE-EE-------------cCCC--------CceEeccCCCeEEe
Q 003205 257 ESALPPEQIAWCG--------MDSVLLYWND---M-LV-MV-------------APQA--------EPVQYFYDEPLVLI 302 (839)
Q Consensus 257 ~~~~~p~~~~WcG--------~d~vv~~~~~---~-l~-li-------------g~~~--------~~v~f~~~~~~~l~ 302 (839)
+ ..+..+.|+. .|..+..|+- . +. +. |+.. .++.|++++..+++
T Consensus 602 ~--~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~s 679 (694)
T 3dm0_A 602 N--SVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFS 679 (694)
T ss_dssp S--SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEE
T ss_pred C--CcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEE
Confidence 3 3456677763 3333455642 1 11 11 1110 14678899999999
Q ss_pred ecCCc-eEEEccC
Q 003205 303 PECDG-VRILSNS 314 (839)
Q Consensus 303 ~E~DG-vRIit~~ 314 (839)
...|| ||||.-.
T Consensus 680 gs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 680 GYTDGVIRVWGIG 692 (694)
T ss_dssp EETTSEEEEEEC-
T ss_pred EcCCCeEEEEecc
Confidence 99999 9999764
No 24
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.74 E-value=3.2e-16 Score=178.42 Aligned_cols=271 Identities=8% Similarity=0.063 Sum_probs=194.6
Q ss_pred EEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCC
Q 003205 38 VACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIH 116 (839)
Q Consensus 38 va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~ 116 (839)
.+++++|+.+|+.. .+++|++|+ .+|+++.++..|. +.|.++.|+|++.+++++.||+|++|++.
T Consensus 126 ~~~~~~~~~l~sgs------------~dg~i~vwd~~~~~~~~~~~~h~--~~V~~l~~~~~~~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 126 TCLQFEDNYVITGA------------DDKMIRVYDSINKKFLLQLSGHD--GGVWALKYAHGGILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp EEEEEETTEEEEEE------------TTSCEEEEETTTTEEEEEECCCS--SCEEEEEECSTTEEEEEETTSCEEEEETT
T ss_pred EEEEECCCEEEEEc------------CCCcEEEEECCCCcEEEEEeCCC--cCEEEEEEcCCCEEEEEeCCCCEEEEECC
Confidence 35666778888776 589999999 6889999999998 99999999999989999999999999964
Q ss_pred -CCccccCCCCCccccccCeEEEEEE--CCeEEEEecCC-eEEEEecCCCceEEE-cCC----------C---------C
Q 003205 117 -AELIEPNASMGKECFEENVVECVFW--GNGVVCVTEAN-RYFCMADFATMKVCE-LAR----------P---------E 172 (839)
Q Consensus 117 -G~~~~~~~g~~~~~~~~~V~~~~~~--~~G~v~~t~~~-~~~~v~~~~~~~~~~-l~~----------~---------~ 172 (839)
|+......+| ...|..+.+. ++|..+++++. ....+|++....... ... + .
T Consensus 192 ~~~~~~~~~~h-----~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 192 KGCCTHVFEGH-----NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp TTEEEEEECCC-----SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred CCcEEEEECCC-----CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence 6666666677 6778888887 57766666543 233455554322110 000 0 0
Q ss_pred CCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCC
Q 003205 173 VEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNF 247 (839)
Q Consensus 173 ~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~ 247 (839)
.++.....+ ++++++.++..+.|++|++||..... ..+.+++..+++||+|+.+|+++.||+|.+|+..-
T Consensus 267 ~~~~~~v~~-----~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 267 RGHMASVRT-----VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp CCCSSCEEE-----EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred cCccceEEE-----EcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 001112222 24589999999999999999987543 46788999999999999999999999999999876
Q ss_pred CCccccccCCCCCCCCceeee-------cCceEEEEecC----EEEEEcCCC--CceEeccCCCeEEeecCCc-eEEEcc
Q 003205 248 SSPVIDESCESALPPEQIAWC-------GMDSVLLYWND----MLVMVAPQA--EPVQYFYDEPLVLIPECDG-VRILSN 313 (839)
Q Consensus 248 ~~~l~e~~~~~~~~p~~~~Wc-------G~d~vv~~~~~----~l~lig~~~--~~v~f~~~~~~~l~~E~DG-vRIit~ 313 (839)
++.+.++..+ ...+..+.|. +.|..+..|+- ......+.. ..+.|.+++..++++. || |+||+.
T Consensus 342 ~~~~~~~~~h-~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~ 419 (464)
T 3v7d_B 342 GELMYTLQGH-TALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNL 419 (464)
T ss_dssp TEEEEEECCC-SSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEET
T ss_pred CcEEEEEeCC-CCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEEC
Confidence 7777677655 2345555554 56777777753 222222222 2567888888887777 77 999999
Q ss_pred Ccceeeec-cchhhHhhhccCC
Q 003205 314 SSMEFLQR-VPASTEQIFAIGS 334 (839)
Q Consensus 314 ~~~~~l~~-Vp~~~~~vf~igS 334 (839)
...+++++ ...+...|..+..
T Consensus 420 ~~g~~~~~~~~~~~~~v~~v~~ 441 (464)
T 3v7d_B 420 RSGKLVHANILKDADQIWSVNF 441 (464)
T ss_dssp TTCCEEESCTTTTCSEEEEEEE
T ss_pred CCCcEEehhhccCCCcEEEEEe
Confidence 99999986 5555555655544
No 25
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.74 E-value=6.8e-16 Score=166.93 Aligned_cols=263 Identities=11% Similarity=0.118 Sum_probs=178.0
Q ss_pred ccCCCCCCCCCEEEEcCCC-CeEEEEecCchhhhhhcccCCceEEEEcCC------CCceeEEEecCCCCCeEEEeecCC
Q 003205 26 MRWKHIDLSRNKVACAPFG-GPIAVIRDDSKIVQLYAESALRKLRIFNSA------GVLISETVWKNPGGRLIGMSWSED 98 (839)
Q Consensus 26 m~w~~~~l~~~~va~sp~G-g~IA~~~d~~k~~~~~~~~~~~~I~iy~~~------G~ll~ti~~~~~~~~I~~~~fs~d 98 (839)
|..| .-....++++|++ ..+|+.+ .|++|+||+.. |.++.++..|. +.|.++.|+|+
T Consensus 34 L~GH--~~~V~~v~~sp~~~~~l~S~s------------~D~~i~vWd~~~~~~~~~~~~~~l~~h~--~~V~~~~~s~d 97 (340)
T 4aow_A 34 LKGH--NGWVTQIATTPQFPDMILSAS------------RDKTIIMWKLTRDETNYGIPQRALRGHS--HFVSDVVISSD 97 (340)
T ss_dssp ECCC--SSCEEEEEECTTCTTEEEEEE------------TTSCEEEEEECCSSSCSEEEEEEECCCS--SCEEEEEECTT
T ss_pred ECCc--cCCEEEEEEeCCCCCEEEEEc------------CCCeEEEEECCCCCcccceeeEEEeCCC--CCEEEEEECCC
Confidence 4455 3356789999984 5788876 58999999953 34567788888 99999999999
Q ss_pred Ce-EEEEEeCCeEEEEeCCCCc-cccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCceEEEcCCCCCCC
Q 003205 99 QT-LICVVQDGTVYRYNIHAEL-IEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKVCELARPEVEE 175 (839)
Q Consensus 99 e~-Lv~v~~dGtv~l~~~~G~~-~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~~~~l~~~~~~~ 175 (839)
+. |++++.||+|++|+..... ......+ ...+....+.++|..+++++. ....+++........... .+.
T Consensus 98 g~~l~s~~~d~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~--~~~ 170 (340)
T 4aow_A 98 GQFALSGSWDGTLRLWDLTTGTTTRRFVGH-----TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESH 170 (340)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECC-----SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS--SSC
T ss_pred CCEEEEEcccccceEEeecccceeeeecCC-----CCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe--ccc
Confidence 98 5899999999999865443 3333333 445666677777777776543 234566665443333221 111
Q ss_pred CCceEEEeCCCCCC--CCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCC
Q 003205 176 LPHCVAVIEPKYTM--TGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFS 248 (839)
Q Consensus 176 ~~~~w~vi~~~~S~--~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~ 248 (839)
......+ .|++ .+...+..+.|++|++|+..... ..+.++|..|+|||+|+++|+++.||+|.+|+..-.
T Consensus 171 ~~~v~~~---~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 171 SEWVSCV---RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp SSCEEEE---EECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred cCcccce---EEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence 2221222 2222 34566777889999999988654 567889999999999999999999999999987766
Q ss_pred CccccccCCCCCCCCceeee--------cCceEEEEecC---E-E----------EEEcCCCC--ceEeccCCCeEEeec
Q 003205 249 SPVIDESCESALPPEQIAWC--------GMDSVLLYWND---M-L----------VMVAPQAE--PVQYFYDEPLVLIPE 304 (839)
Q Consensus 249 ~~l~e~~~~~~~~p~~~~Wc--------G~d~vv~~~~~---~-l----------~lig~~~~--~v~f~~~~~~~l~~E 304 (839)
+.+..+..+. .+..+.|. +.|..+..|+- . + ...++.+. .+.|.+++..+++..
T Consensus 248 ~~~~~~~~~~--~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs 325 (340)
T 4aow_A 248 KHLYTLDGGD--IINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY 325 (340)
T ss_dssp EEEEEEECSS--CEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEE
T ss_pred ceeeeecCCc--eEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEe
Confidence 6665554432 34444554 44555556642 1 1 11233333 678999999999999
Q ss_pred CCc-eEEEccCcc
Q 003205 305 CDG-VRILSNSSM 316 (839)
Q Consensus 305 ~DG-vRIit~~~~ 316 (839)
.|| ||||..+.+
T Consensus 326 ~Dg~v~iW~~~tG 338 (340)
T 4aow_A 326 TDNLVRVWQVTIG 338 (340)
T ss_dssp TTSCEEEEEEEC-
T ss_pred CCCEEEEEeCCCc
Confidence 999 999986543
No 26
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.74 E-value=1.5e-16 Score=180.37 Aligned_cols=261 Identities=12% Similarity=0.099 Sum_probs=170.9
Q ss_pred CCCCCEEEEcC-CCCeEEEEecCchhhhhhcccCCceEEEEcCC-CCceeE--EEecCCCCCeEEEeecC-CC-eEEEEE
Q 003205 32 DLSRNKVACAP-FGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISE--TVWKNPGGRLIGMSWSE-DQ-TLICVV 105 (839)
Q Consensus 32 ~l~~~~va~sp-~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G~ll~t--i~~~~~~~~I~~~~fs~-de-~Lv~v~ 105 (839)
+-....++++| ++..||+.. .|++|+||+.. |+.... +..|. +.|.++.|+| ++ .|++++
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs------------~dg~i~lWd~~~~~~~~~~~~~gH~--~~V~~l~f~p~~~~~l~s~s 184 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGS------------KGGDIMLWNFGIKDKPTFIKGIGAG--GSITGLKFNPLNTNQFYASS 184 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEE------------TTSCEEEECSSCCSCCEEECCCSSS--CCCCEEEECSSCTTEEEEEC
T ss_pred CCCEEEEEEeCCCCCEEEEEe------------CCCEEEEEECCCCCceeEEEccCCC--CCEEEEEEeCCCCCEEEEEe
Confidence 33456899999 566899886 58999999964 444443 44566 8999999998 55 478999
Q ss_pred eCCeEEEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCceEEEcCCCCCCCCCceEEEeC
Q 003205 106 QDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAVIE 184 (839)
Q Consensus 106 ~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~ 184 (839)
.||+|++||+.++.......+... ...|..+.+.++|..+++++.+ ...+++..+.....+.. +.....++
T Consensus 185 ~D~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~----h~~~v~~v-- 256 (435)
T 4e54_B 185 MEGTTRLQDFKGNILRVFASSDTI--NIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRM----HKKKVTHV-- 256 (435)
T ss_dssp SSSCEEEEETTSCEEEEEECCSSC--SCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBC----CSSCEEEE--
T ss_pred CCCEEEEeeccCCceeEEeccCCC--CccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEec----ccceEEee--
Confidence 999999999987764333322111 3456678899999888886543 34566665433322221 22233333
Q ss_pred CCCCCCCc-EEEEEEeCCeEEEEecCCcc--------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcccccc
Q 003205 185 PKYTMTGS-VEVLIGTDAGILMLDEDGVQ--------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDES 255 (839)
Q Consensus 185 ~~~S~~~~-~~v~~s~d~tv~l~~~~~~~--------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~ 255 (839)
.|+|++. .++..+.|++|++||..... ..|..+|..++|||||++||+++.||+|+||+..-.+....+.
T Consensus 257 -~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~ 335 (435)
T 4e54_B 257 -ALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI 335 (435)
T ss_dssp -EECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC
T ss_pred -eecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe
Confidence 5666876 56677789999999976432 3578899999999999999999999999999866444332221
Q ss_pred CC-----CCCCCCceeee--------------------c-CceEEEEecC----E-EEEEcCCCC---ce-EeccCCCeE
Q 003205 256 CE-----SALPPEQIAWC--------------------G-MDSVLLYWND----M-LVMVAPQAE---PV-QYFYDEPLV 300 (839)
Q Consensus 256 ~~-----~~~~p~~~~Wc--------------------G-~d~vv~~~~~----~-l~lig~~~~---~v-~f~~~~~~~ 300 (839)
.+ ....+....|. + ++..+..|+- . ..+.++... ++ .|.+++..+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~l 415 (435)
T 4e54_B 336 PHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTL 415 (435)
T ss_dssp CCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCE
T ss_pred cccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEE
Confidence 11 11123333343 2 2234555642 1 234444443 33 588888887
Q ss_pred EeecCCc-eEEEccCcc
Q 003205 301 LIPECDG-VRILSNSSM 316 (839)
Q Consensus 301 l~~E~DG-vRIit~~~~ 316 (839)
+.+. || ||||+.+..
T Consensus 416 asg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 416 ASAM-GYHILIWSQQEA 431 (435)
T ss_dssp EEEC-SSEEEECCCC--
T ss_pred EEEc-CCcEEEEECCcC
Confidence 7665 65 999998754
No 27
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.74 E-value=3.3e-16 Score=168.71 Aligned_cols=201 Identities=12% Similarity=0.007 Sum_probs=150.5
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVY 111 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~ 111 (839)
....++++|+|..||+.. .|++|++|+. .|+.+.++..|. +.|.++.|+|++. |++++.||+|+
T Consensus 57 ~v~~~~~~~~~~~l~s~s------------~d~~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~sgs~D~~v~ 122 (304)
T 2ynn_A 57 PVRAGKFIARKNWIIVGS------------DDFRIRVFNYNTGEKVVDFEAHP--DYIRSIAVHPTKPYVLSGSDDLTVK 122 (304)
T ss_dssp CEEEEEEEGGGTEEEEEE------------TTSEEEEEETTTCCEEEEEECCS--SCEEEEEECSSSSEEEEEETTSCEE
T ss_pred cEEEEEEeCCCCEEEEEC------------CCCEEEEEECCCCcEEEEEeCCC--CcEEEEEEcCCCCEEEEECCCCeEE
Confidence 345788999999999886 5899999995 789999999998 9999999999987 58999999999
Q ss_pred EEeCCCC--ccccCCCCCccccccCeEEEEEEC-CeEEEEecCC-eEEEEecCCCce-EEEcCCCCCCCCCceEEEeCCC
Q 003205 112 RYNIHAE--LIEPNASMGKECFEENVVECVFWG-NGVVCVTEAN-RYFCMADFATMK-VCELARPEVEELPHCVAVIEPK 186 (839)
Q Consensus 112 l~~~~G~--~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~~-~~~~v~~~~~~~-~~~l~~~~~~~~~~~w~vi~~~ 186 (839)
+|++... ..+...+| ...|..+.|+| +|..+++++. ....+|++.... ...+.. +.......+ .-.
T Consensus 123 lWd~~~~~~~~~~~~~h-----~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~---~~~~~v~~~-~~~ 193 (304)
T 2ynn_A 123 LWNWENNWALEQTFEGH-----EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT---GQERGVNYV-DYY 193 (304)
T ss_dssp EEEGGGTTEEEEEECCC-----CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEEC---CCTTCEEEE-EEC
T ss_pred EEECCCCcchhhhhccc-----CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceecc---CCcCcEEEE-EEE
Confidence 9997533 34556677 67799999998 6766766543 345566665322 112211 011111212 112
Q ss_pred CCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCC
Q 003205 187 YTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCE 257 (839)
Q Consensus 187 ~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~ 257 (839)
.++++..++..+.|++|++||..... ..|..+|..++|||+|++||+++.||+|++|+..-.+.+..+..+
T Consensus 194 ~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~ 269 (304)
T 2ynn_A 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (304)
T ss_dssp CSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred EcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC
Confidence 23478899999999999999987543 578899999999999999999999999999997655555554433
No 28
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.7e-16 Score=173.24 Aligned_cols=252 Identities=13% Similarity=0.072 Sum_probs=168.5
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC---CceeEE-Ee-cCCCCCeEEEeecCCCe-EEEEEeC
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG---VLISET-VW-KNPGGRLIGMSWSEDQT-LICVVQD 107 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G---~ll~ti-~~-~~~~~~I~~~~fs~de~-Lv~v~~d 107 (839)
..+.++++|+ .+|+.+ .|++|+||+..+ +++.++ .. |. +.|.++.|+|++. |++++.|
T Consensus 16 ~v~~~~~s~~--~las~~------------~D~~i~lw~~~~~~~~~~~~~~~~~h~--~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 16 KIWSFDFSQG--ILATGS------------TDRKIKLVSVKYDDFTLIDVLDETAHK--KAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CEEEEEEETT--EEEEEE------------SSSCEEEEECSSSCCEEEEEECTTCCC--SCEEEEEECTTSSEEEEEETT
T ss_pred ceeeeccCCC--EEEEEc------------CCCEEEEEEecCCCeEEEEEEecCCcc--CCEEEEEECCCCCEEEEEeCC
Confidence 4456777776 888876 589999999764 455555 23 66 8899999999997 5799999
Q ss_pred CeEEEEeCCC--------CccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCC-Cc---e-EEEcCCCCC
Q 003205 108 GTVYRYNIHA--------ELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFA-TM---K-VCELARPEV 173 (839)
Q Consensus 108 Gtv~l~~~~G--------~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~-~~---~-~~~l~~~~~ 173 (839)
|+|++|+..+ +......+| ...|..+.|+++|..+++.+.+ ...+|++. .. . ...+..
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h-----~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~--- 151 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAIIEGH-----ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE--- 151 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEEC---------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC---
T ss_pred CcEEEEEcccCcCccccceeEEEEcCC-----CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc---
Confidence 9999998732 234445677 6789999999999888886542 34566653 11 1 122221
Q ss_pred CCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCc----c---cccCCCceEEEECCC--CcEEEEeecCCeEEEEe
Q 003205 174 EELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGV----Q---KVDDTLSQKMAVSPN--GNFVACFTHDGRLVVNN 244 (839)
Q Consensus 174 ~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~----~---~~~~~~i~~ia~Spn--g~~iA~~~~~g~i~i~s 244 (839)
+.....++ .|+|++..++..+.|++|++|+.... . ..|.++|..++|||+ |..+|+++.||+|++|+
T Consensus 152 -h~~~v~~v---~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~ 227 (330)
T 2hes_X 152 -HSQDVKHV---IWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227 (330)
T ss_dssp -CSSCEEEE---EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEE
T ss_pred -CCCceEEE---EECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEE
Confidence 22233333 57779999999999999999986532 1 568899999999999 77999999999999997
Q ss_pred cCCC--------CccccccC-CCCCCCCceeee--------cCceEEEEecC-----EE--E-EEcCCC-C--ceEecc-
Q 003205 245 TNFS--------SPVIDESC-ESALPPEQIAWC--------GMDSVLLYWND-----ML--V-MVAPQA-E--PVQYFY- 295 (839)
Q Consensus 245 sd~~--------~~l~e~~~-~~~~~p~~~~Wc--------G~d~vv~~~~~-----~l--~-lig~~~-~--~v~f~~- 295 (839)
..-. .....+.. + ...+..+.|. |.|..+..|+. .. . +.|+.. . .+.|.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~ 306 (330)
T 2hes_X 228 YMGDDEDDQQEWVCEAILPDVH-KRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLEL 306 (330)
T ss_dssp EEEECTTSCEEEEEEEECCSCC-SSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC--
T ss_pred ecCCCccccceeEEeeeccccc-ccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecC
Confidence 5311 11111211 2 2344555554 66777777862 11 1 234544 2 567777
Q ss_pred -CCCeEEeecCCc-eEEEccC
Q 003205 296 -DEPLVLIPECDG-VRILSNS 314 (839)
Q Consensus 296 -~~~~~l~~E~DG-vRIit~~ 314 (839)
++..+++...|| ||||+.+
T Consensus 307 ~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 307 NGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp ---CCEEEEETTSEEEEEEC-
T ss_pred CCceEEEEecCCCcEEEEEec
Confidence 577888899999 9999865
No 29
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.73 E-value=8.3e-16 Score=170.30 Aligned_cols=258 Identities=9% Similarity=0.028 Sum_probs=182.9
Q ss_pred CCCCEEEEcCCC-CeEEEEecCchhhhhhcccCCceEEEEcCC-CCceeEEEe--cCCCCCeEEEeecC-CCe-EEEEEe
Q 003205 33 LSRNKVACAPFG-GPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISETVW--KNPGGRLIGMSWSE-DQT-LICVVQ 106 (839)
Q Consensus 33 l~~~~va~sp~G-g~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G~ll~ti~~--~~~~~~I~~~~fs~-de~-Lv~v~~ 106 (839)
-....++++|+| ..+|+.. .+++|+||+.. |+....+.. |. +.|.++.|+| ++. |++++.
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~s~~~ 139 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGS------------KGGDIILWDYDVQNKTSFIQGMGPG--DAITGMKFNQFNTNQLFVSSI 139 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEE------------BTSCEEEEETTSTTCEEEECCCSTT--CBEEEEEEETTEEEEEEEEET
T ss_pred CCEEEEEECCCCCCEEEEEc------------CCCeEEEEeCCCcccceeeecCCcC--CceeEEEeCCCCCCEEEEEeC
Confidence 456689999999 8888886 58999999975 566666654 66 8999999999 555 689999
Q ss_pred CCeEEEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCceEEEcCCCCCCCCCceEEEeCC
Q 003205 107 DGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKVCELARPEVEELPHCVAVIEP 185 (839)
Q Consensus 107 dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~ 185 (839)
||+|++|++.|+......++... ...|..+.++++|..+++++. ....++++.+.....+.. ......++
T Consensus 140 d~~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----h~~~v~~~--- 210 (383)
T 3ei3_B 140 RGATTLRDFSGSVIQVFAKTDSW--DYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKL----HKAKVTHA--- 210 (383)
T ss_dssp TTEEEEEETTSCEEEEEECCCCS--SCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEEC----SSSCEEEE---
T ss_pred CCEEEEEECCCCceEEEeccCCC--CCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEecc----CCCcEEEE---
Confidence 99999999988764444433111 466999999998888887644 345566665444444432 22222333
Q ss_pred CCCCCCc-EEEEEEeCCeEEEEecCC----cc----cccCCCceEEEECC-CCcEEEEeecCCeEEEEecCCCCcccccc
Q 003205 186 KYTMTGS-VEVLIGTDAGILMLDEDG----VQ----KVDDTLSQKMAVSP-NGNFVACFTHDGRLVVNNTNFSSPVIDES 255 (839)
Q Consensus 186 ~~S~~~~-~~v~~s~d~tv~l~~~~~----~~----~~~~~~i~~ia~Sp-ng~~iA~~~~~g~i~i~ssd~~~~l~e~~ 255 (839)
.|+|++. .++..+.|++|++||... .. ..+.+++..++||| +|+++|+++.||+|.+|+..-.+.+..+.
T Consensus 211 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 290 (383)
T 3ei3_B 211 EFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII 290 (383)
T ss_dssp EECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred EECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence 5667998 888899999999999875 21 45788999999999 99999999999999999976554443333
Q ss_pred CCC-----CCCCCceeee------------------cCceEEEEecC-----EEEEEcCC--CC--ceEeccCCCeEEee
Q 003205 256 CES-----ALPPEQIAWC------------------GMDSVLLYWND-----MLVMVAPQ--AE--PVQYFYDEPLVLIP 303 (839)
Q Consensus 256 ~~~-----~~~p~~~~Wc------------------G~d~vv~~~~~-----~l~lig~~--~~--~v~f~~~~~~~l~~ 303 (839)
.+. ...+....|+ +.|..+..|+- .-.+.|+. +. .+.|.+++..+++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~ 370 (383)
T 3ei3_B 291 IHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASG 370 (383)
T ss_dssp ECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEE
T ss_pred cccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEe
Confidence 211 0122233443 36777778863 23455543 22 34888889888888
Q ss_pred cCCc-eEEEccC
Q 003205 304 ECDG-VRILSNS 314 (839)
Q Consensus 304 E~DG-vRIit~~ 314 (839)
. || |+||..+
T Consensus 371 s-d~~i~iw~~~ 381 (383)
T 3ei3_B 371 M-GFNILIWNRE 381 (383)
T ss_dssp E-TTEEEEEECC
T ss_pred c-CCcEEEEecC
Confidence 6 87 9999865
No 30
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.73 E-value=5.1e-17 Score=189.06 Aligned_cols=255 Identities=11% Similarity=0.057 Sum_probs=173.3
Q ss_pred CCEEEEcCC------CCeEEEEecCchhhhhhcccCCceEEEEcCCCC------------ceeEEEecCCCCCeEEEeec
Q 003205 35 RNKVACAPF------GGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV------------LISETVWKNPGGRLIGMSWS 96 (839)
Q Consensus 35 ~~~va~sp~------Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~------------ll~ti~~~~~~~~I~~~~fs 96 (839)
...++++|+ |+.+|+.+ .|++|+||+..+. +..++..|. +.|.+++|+
T Consensus 210 V~~v~wsp~~~~~~~~~~LAs~s------------~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~--~~v~sv~~s 275 (524)
T 2j04_B 210 VWDLKWHEGCHAPHLVGCLSFVS------------QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD--SLITTFDFL 275 (524)
T ss_dssp EEEEEECSSCCCSSSSCEEEEEE------------TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT--TCEEEEEES
T ss_pred EEEEEECCCCCCCCCCceEEEEe------------cCCeEEEEEcCCCccccccceeecCceEEEEcCC--CCEEEEEec
Confidence 356888886 67899886 5899999997543 123677777 899999999
Q ss_pred CCCeEEEEEeCCeEEEEeCC-CCc-cccCCCCCccccccCeEEEE--EECCe-EEEEecCC-eEEEEecCCCceE-EEcC
Q 003205 97 EDQTLICVVQDGTVYRYNIH-AEL-IEPNASMGKECFEENVVECV--FWGNG-VVCVTEAN-RYFCMADFATMKV-CELA 169 (839)
Q Consensus 97 ~de~Lv~v~~dGtv~l~~~~-G~~-~~~~~g~~~~~~~~~V~~~~--~~~~G-~v~~t~~~-~~~~v~~~~~~~~-~~l~ 169 (839)
+++.|++++.||+|++||+. |+. .....+| ...|.++. +.++| ..++|++. ....+|++.++.. ..+.
T Consensus 276 ~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H-----~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~ 350 (524)
T 2j04_B 276 SPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVH-----DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV 350 (524)
T ss_dssp SSSEEEEEETTSEEEEEETTBCSSCSEEEECS-----SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE
T ss_pred CCCeEEEEeCCCEEEEEECCCCCCceEEeecc-----cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc
Confidence 98889999999999999986 543 3345677 67798883 45678 77777654 3567787754321 1111
Q ss_pred CCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEe
Q 003205 170 RPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (839)
Q Consensus 170 ~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~s 244 (839)
.. . .....+++ .|||+++.++..+.|++|++|+..... ..|.++|..|+|||+|++||+++.||++++|+
T Consensus 351 ~~-~-~~~~v~~v---~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 351 SR-F-RGSNLVPV---VYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp EE-C-SCCSCCCE---EEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred cc-c-ccCcccce---EeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 00 0 01112333 577899998888899999999976432 56889999999999999999999999999998
Q ss_pred cCCCCccccccCC----CCCCCCceeeecCceEEEEecC------------EEEEEcCCCC--ceEeccCCC---eEEee
Q 003205 245 TNFSSPVIDESCE----SALPPEQIAWCGMDSVLLYWND------------MLVMVAPQAE--PVQYFYDEP---LVLIP 303 (839)
Q Consensus 245 sd~~~~l~e~~~~----~~~~p~~~~WcG~d~vv~~~~~------------~l~lig~~~~--~v~f~~~~~---~~l~~ 303 (839)
.. .+.+..+... ....+.+++|.-+..++..|++ ...+.|+.+. .|.|++++. .+..+
T Consensus 426 ~~-~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg 504 (524)
T 2j04_B 426 AA-RRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFS 504 (524)
T ss_dssp SC-SSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEE
T ss_pred ch-HhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhh
Confidence 65 3333222110 0001234555544434444431 3456777765 899999864 77888
Q ss_pred cCCc-eEEEccC
Q 003205 304 ECDG-VRILSNS 314 (839)
Q Consensus 304 E~DG-vRIit~~ 314 (839)
.-|| ||||.-.
T Consensus 505 ~~~g~vrlw~l~ 516 (524)
T 2j04_B 505 NSAGLLTLEYLS 516 (524)
T ss_dssp CTTSEEEEEECS
T ss_pred ccCceEEEEEcc
Confidence 8889 9999865
No 31
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.73 E-value=1.8e-16 Score=173.72 Aligned_cols=209 Identities=13% Similarity=0.168 Sum_probs=155.2
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCC---ceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCe
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV---LISETVWKNPGGRLIGMSWSEDQT-LICVVQDGT 109 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~---ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGt 109 (839)
....++++|+|..+|+.. .++.|+||+..+. .+.++..|. +.|.++.|+|++. |++++.||+
T Consensus 10 ~i~~~~~s~~~~~l~~~~------------~d~~v~i~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~~~~~dg~ 75 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICP------------NNHEVHIYEKSGNKWVQVHELKEHN--GQVTGVDWAPDSNRIVTCGTDRN 75 (372)
T ss_dssp CCCEEEECTTSSEEEEEC------------SSSEEEEEEEETTEEEEEEEEECCS--SCEEEEEEETTTTEEEEEETTSC
T ss_pred CeEEEEECCCCCEEEEEe------------CCCEEEEEeCCCCcEEeeeeecCCC--CcccEEEEeCCCCEEEEEcCCCe
Confidence 556899999999999985 5899999997665 888899888 9999999999987 578999999
Q ss_pred EEEEeCC-CCc--cccCCCCCccccccCeEEEEEECCeEEEEecC--CeEEEEecCCCce----EEEcCCCCCCCCCceE
Q 003205 110 VYRYNIH-AEL--IEPNASMGKECFEENVVECVFWGNGVVCVTEA--NRYFCMADFATMK----VCELARPEVEELPHCV 180 (839)
Q Consensus 110 v~l~~~~-G~~--~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~--~~~~~v~~~~~~~----~~~l~~~~~~~~~~~w 180 (839)
|++|++. |+. .....+| ...|..+.++++|..+++.+ +.+ .++++.... ...+.. .......
T Consensus 76 i~vwd~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d~~v-~i~d~~~~~~~~~~~~~~~---~~~~~i~ 146 (372)
T 1k8k_C 76 AYVWTLKGRTWKPTLVILRI-----NRAARCVRWAPNEKKFAVGSGSRVI-SICYFEQENDWWVCKHIKK---PIRSTVL 146 (372)
T ss_dssp EEEEEEETTEEEEEEECCCC-----SSCEEEEEECTTSSEEEEEETTSSE-EEEEEETTTTEEEEEEECT---TCCSCEE
T ss_pred EEEEECCCCeeeeeEEeecC-----CCceeEEEECCCCCEEEEEeCCCEE-EEEEecCCCcceeeeeeec---ccCCCee
Confidence 9999864 443 2223455 66799999999887776653 444 333333221 122211 1122223
Q ss_pred EEeCCCCCCCCcEEEEEEeCCeEEEEecC-------------------Ccc----cccCCCceEEEECCCCcEEEEeecC
Q 003205 181 AVIEPKYTMTGSVEVLIGTDAGILMLDED-------------------GVQ----KVDDTLSQKMAVSPNGNFVACFTHD 237 (839)
Q Consensus 181 ~vi~~~~S~~~~~~v~~s~d~tv~l~~~~-------------------~~~----~~~~~~i~~ia~Spng~~iA~~~~~ 237 (839)
++ .|+|++..++..+.|++|++|+.. +.. ..+.+++..+++||+|+++++++.|
T Consensus 147 ~~---~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 223 (372)
T 1k8k_C 147 SL---DWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD 223 (372)
T ss_dssp EE---EECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred EE---EEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC
Confidence 33 566799999999999999999953 221 3567889999999999999999999
Q ss_pred CeEEEEecCCCCccccccCCCCCCCCceeeec
Q 003205 238 GRLVVNNTNFSSPVIDESCESALPPEQIAWCG 269 (839)
Q Consensus 238 g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG 269 (839)
|+|.+|+..-.+.+.++..+ ...+..+.|..
T Consensus 224 ~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~ 254 (372)
T 1k8k_C 224 STVCLADADKKMAVATLASE-TLPLLAVTFIT 254 (372)
T ss_dssp TEEEEEEGGGTTEEEEEECS-SCCEEEEEEEE
T ss_pred CEEEEEECCCCceeEEEccC-CCCeEEEEEec
Confidence 99999998767777677665 34567888873
No 32
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.73 E-value=1.2e-15 Score=170.71 Aligned_cols=259 Identities=10% Similarity=0.056 Sum_probs=182.3
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC-CCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEe
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYN 114 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~ 114 (839)
..+++|+|..+|+.. .++.|+||+.. |+.+..+..|. +.|.++.|+|++. |++++.||+|++|+
T Consensus 102 ~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~s~d~~i~iwd 167 (420)
T 3vl1_A 102 VDTAKLQMRRFILGT------------TEGDIKVLDSNFNLQREIDQAHV--SEITKLKFFPSGEALISSSQDMQLKIWS 167 (420)
T ss_dssp EEEECSSSCEEEEEE------------TTSCEEEECTTSCEEEEETTSSS--SCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEEecCCCEEEEEE------------CCCCEEEEeCCCcceeeeccccc--CccEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 447899999999986 58999999965 45555556787 9999999999987 68999999999999
Q ss_pred C-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCce-EEEcCCCCC-CCCCceE----------
Q 003205 115 I-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMK-VCELARPEV-EELPHCV---------- 180 (839)
Q Consensus 115 ~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~-~~~l~~~~~-~~~~~~w---------- 180 (839)
+ .|+......+| ...|..+.++++|..+++.+. ....+|++.... ...+..... .....+.
T Consensus 168 ~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 242 (420)
T 3vl1_A 168 VKDGSNPRTLIGH-----RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL 242 (420)
T ss_dssp TTTCCCCEEEECC-----SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC
T ss_pred CCCCcCceEEcCC-----CCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCccee
Confidence 6 46666656677 678999999998877777543 234566666443 233321100 0111111
Q ss_pred ------EEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc------cccCCCceEEEECCCCc-EEEEeecCCeEEEEecCC
Q 003205 181 ------AVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGN-FVACFTHDGRLVVNNTNF 247 (839)
Q Consensus 181 ------~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~Spng~-~iA~~~~~g~i~i~ssd~ 247 (839)
.+....|||+|..++..+.|++|.+||..... ..+..++..+++||+|+ ++++++.||+|.+|+..-
T Consensus 243 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 322 (420)
T 3vl1_A 243 HEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS 322 (420)
T ss_dssp GGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred eecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCC
Confidence 12234689999999999999999999987543 34678899999999999 999999999999998764
Q ss_pred CC-ccccccCCCCCCCCceee--------ecCceEEEEecC--------------EEEEEcCCCC--ceEeccCCC---e
Q 003205 248 SS-PVIDESCESALPPEQIAW--------CGMDSVLLYWND--------------MLVMVAPQAE--PVQYFYDEP---L 299 (839)
Q Consensus 248 ~~-~l~e~~~~~~~~p~~~~W--------cG~d~vv~~~~~--------------~l~lig~~~~--~v~f~~~~~---~ 299 (839)
.+ .+..+..+.......+.| +|.|..+..|+- ...+.++.+. .+.|.+++. .
T Consensus 323 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~ 402 (420)
T 3vl1_A 323 PECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGE 402 (420)
T ss_dssp TTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCE
T ss_pred CcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcce
Confidence 43 355554432223333333 367777777751 2355666554 688888887 4
Q ss_pred EEeecCCc-eEEEccC
Q 003205 300 VLIPECDG-VRILSNS 314 (839)
Q Consensus 300 ~l~~E~DG-vRIit~~ 314 (839)
++...-+| +++|..+
T Consensus 403 l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 403 VLEVGKNNFCALYNLS 418 (420)
T ss_dssp EEEEETTTEEEEEESC
T ss_pred EEEEcCCceEEEEecc
Confidence 54445555 8888765
No 33
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.72 E-value=4.2e-16 Score=170.66 Aligned_cols=209 Identities=13% Similarity=-0.005 Sum_probs=158.0
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC-----CceeEEEecCCCCCeEEEeecCCCeEEEEEeCCe
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-----VLISETVWKNPGGRLIGMSWSEDQTLICVVQDGT 109 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G-----~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGt 109 (839)
...++++|+|..+|+.. .+++|++|+... .+..++..|. +.|.++.|++++.+++++.||+
T Consensus 100 v~~~~~s~~~~~l~s~~------------~d~~v~iw~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~l~s~s~d~~ 165 (340)
T 1got_B 100 VMTCAYAPSGNYVACGG------------LDNICSIYNLKTREGNVRVSRELAGHT--GYLSCCRFLDDNQIVTSSGDTT 165 (340)
T ss_dssp EEEEEECTTSSEEEEEE------------TTCEEEEEETTTCSBSCEEEEEEECCS--SCEEEEEEEETTEEEEEETTSC
T ss_pred EEEEEECCCCCEEEEEe------------CCCeEEEEECccCCCcceeEEEecCCC--ccEEEEEECCCCcEEEEECCCc
Confidence 35678899999988886 589999999653 3566788888 9999999999999999999999
Q ss_pred EEEEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCce-EEEcCCCCCCCCCceEEEeCCC
Q 003205 110 VYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMK-VCELARPEVEELPHCVAVIEPK 186 (839)
Q Consensus 110 v~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~-~~~l~~~~~~~~~~~w~vi~~~ 186 (839)
|++|++ .|+......+| ...|..+.++++|..+++++. ....+|++.... ...+.. +....+++ .
T Consensus 166 i~~wd~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~----h~~~v~~v---~ 233 (340)
T 1got_B 166 CALWDIETGQQTTTFTGH-----TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG----HESDINAI---C 233 (340)
T ss_dssp EEEEETTTTEEEEEECCC-----SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC----CSSCEEEE---E
T ss_pred EEEEECCCCcEEEEEcCC-----CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC----CcCCEEEE---E
Confidence 999996 46666666678 677999999999988877643 244566665433 333321 22233333 5
Q ss_pred CCCCCcEEEEEEeCCeEEEEecCCcc-------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCC
Q 003205 187 YTMTGSVEVLIGTDAGILMLDEDGVQ-------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESA 259 (839)
Q Consensus 187 ~S~~~~~~v~~s~d~tv~l~~~~~~~-------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~ 259 (839)
|+|+|+.++..+.|++|++||..... .....+|..++|||+|+++|+++.||+|.+|+..-.+.+..+..+ .
T Consensus 234 ~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h-~ 312 (340)
T 1got_B 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH-D 312 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC-S
T ss_pred EcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecC-C
Confidence 67799999999999999999987543 123347999999999999999999999999997656666566555 3
Q ss_pred CCCCceeeecC
Q 003205 260 LPPEQIAWCGM 270 (839)
Q Consensus 260 ~~p~~~~WcG~ 270 (839)
..+..+.|..+
T Consensus 313 ~~v~~~~~s~d 323 (340)
T 1got_B 313 NRVSCLGVTDD 323 (340)
T ss_dssp SCEEEEEECTT
T ss_pred CcEEEEEEcCC
Confidence 35556666543
No 34
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.72 E-value=2.5e-17 Score=181.90 Aligned_cols=209 Identities=13% Similarity=0.160 Sum_probs=151.5
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC---CceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCe
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG---VLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGT 109 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G---~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGt 109 (839)
....++++|+|..||+.. .+++|+||+..+ +++.++..|. +.|.++.|+|+++ |++++.||+
T Consensus 13 ~v~~~~~s~~g~~l~~~~------------~d~~i~iw~~~~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~d~~ 78 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTT------------ATNQVELYEQDGNGWKHARTFSDHD--KIVTCVDWAPKSNRIVTCSQDRN 78 (377)
T ss_dssp CCSCCEECSSSSEEECCC------------SSSCBCEEEEETTEEEECCCBCCCS--SCEEEEEECTTTCCEEEEETTSS
T ss_pred cEEEEEECCCCCEEEEec------------CCCEEEEEEccCCceEEEEEEecCC--ceEEEEEEeCCCCEEEEEeCCCe
Confidence 456889999999999875 589999999765 6788888888 9999999999987 689999999
Q ss_pred EEEEeCC-CC---ccccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCce----EEEcCCCCCCCCCceE
Q 003205 110 VYRYNIH-AE---LIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMK----VCELARPEVEELPHCV 180 (839)
Q Consensus 110 v~l~~~~-G~---~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~----~~~l~~~~~~~~~~~w 180 (839)
|++|++. |+ ......+| ...|..+.++++|..+++.+. ....++++.... ...+..+ +....+
T Consensus 79 v~vwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---h~~~v~ 150 (377)
T 3dwl_C 79 AYVYEKRPDGTWKQTLVLLRL-----NRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRP---LRSTIL 150 (377)
T ss_dssp EEEC------CCCCEEECCCC-----SSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSS---CCSCEE
T ss_pred EEEEEcCCCCceeeeeEeccc-----CCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecc---cCCCeE
Confidence 9999865 33 23445566 678999999998877777543 245567766432 2233210 122223
Q ss_pred EEeCCCCCCCCcEEEEEEeCCeEEEEecCC-------------------cc---cccCCCceEEEECCCCcEEEEeecCC
Q 003205 181 AVIEPKYTMTGSVEVLIGTDAGILMLDEDG-------------------VQ---KVDDTLSQKMAVSPNGNFVACFTHDG 238 (839)
Q Consensus 181 ~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~-------------------~~---~~~~~~i~~ia~Spng~~iA~~~~~g 238 (839)
++ .|+|+++.++..+.|++|++|+... .. ..+.++|..++|||+|+++|+++.||
T Consensus 151 ~~---~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~ 227 (377)
T 3dwl_C 151 SL---DWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDS 227 (377)
T ss_dssp EE---EECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTT
T ss_pred EE---EEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCC
Confidence 33 5677999999999999999999741 11 25678899999999999999999999
Q ss_pred eEEEEecCCCCc----cccccCCCCCCCCceeee
Q 003205 239 RLVVNNTNFSSP----VIDESCESALPPEQIAWC 268 (839)
Q Consensus 239 ~i~i~ssd~~~~----l~e~~~~~~~~p~~~~Wc 268 (839)
+|.+|+..-.+. +..+..+ ...+..+.|+
T Consensus 228 ~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~s 260 (377)
T 3dwl_C 228 SVTIAYPSAPEQPPRALITVKLS-QLPLRSLLWA 260 (377)
T ss_dssp EEC-CEECSTTSCEEECCCEECS-SSCEEEEEEE
T ss_pred cEEEEECCCCCCcceeeEeecCC-CCceEEEEEc
Confidence 999999775555 5555555 3456788886
No 35
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.72 E-value=7.1e-16 Score=167.79 Aligned_cols=270 Identities=12% Similarity=0.063 Sum_probs=183.4
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC-CceeEEE-ecCCCCCeEEEeecCC---Ce-EEEEEe
Q 003205 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-VLISETV-WKNPGGRLIGMSWSED---QT-LICVVQ 106 (839)
Q Consensus 33 l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G-~ll~ti~-~~~~~~~I~~~~fs~d---e~-Lv~v~~ 106 (839)
-....++++|+|..+++.... ...+++|+||+..+ +...... .|. +.|.++.|+|+ +. |++++.
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~--------~~~d~~v~iw~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~l~~~~~ 88 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNF--------ARGTGVIQLYEIQHGDLKLLREIEKA--KPIKCGTFGATSLQQRYLATGDF 88 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC----------CCCEEEEEEEECSSSEEEEEEEEES--SCEEEEECTTCCTTTCCEEEEET
T ss_pred CceEEEEEcCCCceEEEecCc--------cCCCcEEEEEeCCCCcccceeeeccc--CcEEEEEEcCCCCCCceEEEecC
Confidence 356689999999766655410 01389999999655 4443333 355 89999999998 44 789999
Q ss_pred CCeEEEEeCC-CC-ccccCCCCCccccccCeEEEEE------ECCeEEEEecCC-eEEEEecCCCce--EEEcCCCCCCC
Q 003205 107 DGTVYRYNIH-AE-LIEPNASMGKECFEENVVECVF------WGNGVVCVTEAN-RYFCMADFATMK--VCELARPEVEE 175 (839)
Q Consensus 107 dGtv~l~~~~-G~-~~~~~~g~~~~~~~~~V~~~~~------~~~G~v~~t~~~-~~~~v~~~~~~~--~~~l~~~~~~~ 175 (839)
||+|++|++. |+ ......+| ...|..+.+ +++|-.+++++. ....+|++.... ...+....-..
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 163 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGH-----KEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN 163 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCC-----SSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC
T ss_pred CCeEEEEeCCCCCccEEEEEec-----ccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC
Confidence 9999999864 44 44555567 667887754 467777777543 244566666432 33333211112
Q ss_pred CCceEEE-eCCCCCCCCcEEEEEEeCCeEEEEecCCcc----cccCCCceEEEECC---CCcEEEEeecCCeEEEEecCC
Q 003205 176 LPHCVAV-IEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSP---NGNFVACFTHDGRLVVNNTNF 247 (839)
Q Consensus 176 ~~~~w~v-i~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----~~~~~~i~~ia~Sp---ng~~iA~~~~~g~i~i~ssd~ 247 (839)
...+|++ ..+.|+|++..++..+.|++|++|+..... ..+..++..+++|| +|+.+++++.+|+|.+|+..-
T Consensus 164 ~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 164 KRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp CCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred CCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 3356766 566789999999999999999999988654 45778999999999 999999999999999998654
Q ss_pred CCcccccc-----CCCCCCCCceeee----------cCceEEEEecC------------------------EEEEEcCCC
Q 003205 248 SSPVIDES-----CESALPPEQIAWC----------GMDSVLLYWND------------------------MLVMVAPQA 288 (839)
Q Consensus 248 ~~~l~e~~-----~~~~~~p~~~~Wc----------G~d~vv~~~~~------------------------~l~lig~~~ 288 (839)
.+.+..+. .+ ...+..+.|+ +.|..+..|+- ...+.++.+
T Consensus 244 ~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 322 (357)
T 3i2n_A 244 QHPTKGFASVSEKAH-KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ 322 (357)
T ss_dssp EETTTEEEEEEEECC-SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS
T ss_pred CCcccceeeeccCCC-cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC
Confidence 44443332 33 3355566665 45555666652 123445555
Q ss_pred C--ceEeccCCCeEE-eecCCc-eEEEccCccee
Q 003205 289 E--PVQYFYDEPLVL-IPECDG-VRILSNSSMEF 318 (839)
Q Consensus 289 ~--~v~f~~~~~~~l-~~E~DG-vRIit~~~~~~ 318 (839)
. .+.|.+++..++ ....|| ||||.-++.+.
T Consensus 323 ~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 323 PISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp CEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred CeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 4 688888888887 688898 99999876554
No 36
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.72 E-value=5.1e-16 Score=170.90 Aligned_cols=208 Identities=11% Similarity=0.097 Sum_probs=147.6
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEE----ecCCCCCeEEEeecCCCe-EEEEEeCC
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETV----WKNPGGRLIGMSWSEDQT-LICVVQDG 108 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~----~~~~~~~I~~~~fs~de~-Lv~v~~dG 108 (839)
...++++|++. +++.. .+++|+||+. .|+.+.... .|. +.|.++.|+|+++ |++++.||
T Consensus 85 v~~~~~s~d~~-l~~~s------------~dg~v~lWd~~~~~~~~~~~~~~~~H~--~~V~~v~~spdg~~l~sgs~d~ 149 (344)
T 4gqb_B 85 VADLTWVGERG-ILVAS------------DSGAVELWELDENETLIVSKFCKYEHD--DIVSTVSVLSSGTQAVSGSKDI 149 (344)
T ss_dssp EEEEEEETTTE-EEEEE------------TTSEEEEEEECTTSSCEEEEEEEECCS--SCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEeCCCe-EEEEE------------CCCEEEEEeccCCCceeEeeccccCCC--CCEEEEEECCCCCEEEEEeCCC
Confidence 45788999864 55554 5899999995 677665543 566 8999999999997 68999999
Q ss_pred eEEEEeC-CCCccccCCCCCccccccCeEEEEEECCeE-EEEecCC-eEEEEecCCCceE-EEcCCCCCCCCCceEEEeC
Q 003205 109 TVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGV-VCVTEAN-RYFCMADFATMKV-CELARPEVEELPHCVAVIE 184 (839)
Q Consensus 109 tv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~-v~~t~~~-~~~~v~~~~~~~~-~~l~~~~~~~~~~~w~vi~ 184 (839)
+|++||+ .|+......+| ...|..+.|+++|. ++++.+. ....+|++..++. ..+.... ......++
T Consensus 150 ~i~iwd~~~~~~~~~~~~h-----~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~-- 220 (344)
T 4gqb_B 150 CIKVWDLAQQVVLSSYRAH-----AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA--PGYLPTSL-- 220 (344)
T ss_dssp CEEEEETTTTEEEEEECCC-----SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC------CCCEEEE--
T ss_pred eEEEEECCCCcEEEEEcCc-----CCceEEEEecCCCCCceeeeccccccccccccccceeeeeecce--eeccceee--
Confidence 9999996 56677777888 77899999998773 4555432 3345677764432 3332111 11111222
Q ss_pred CCCCC-CCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCC-cEEEEeecCCeEEEEecCCCCccccccCC
Q 003205 185 PKYTM-TGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNG-NFVACFTHDGRLVVNNTNFSSPVIDESCE 257 (839)
Q Consensus 185 ~~~S~-~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng-~~iA~~~~~g~i~i~ssd~~~~l~e~~~~ 257 (839)
.|+| ++..++..+.|++|++||..... ..|.++|..|+|||+| ++||+++.||+|+||+...++.+ .+..+
T Consensus 221 -~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H 298 (344)
T 4gqb_B 221 -AWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAH 298 (344)
T ss_dssp -EECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCC
T ss_pred -eecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCC
Confidence 3444 45677788889999999987543 5788999999999998 58999999999999987755544 45555
Q ss_pred CCCCCCceeeec
Q 003205 258 SALPPEQIAWCG 269 (839)
Q Consensus 258 ~~~~p~~~~WcG 269 (839)
...+..++|+-
T Consensus 299 -~~~V~~v~~sp 309 (344)
T 4gqb_B 299 -RDFVRDATWSP 309 (344)
T ss_dssp -SSCEEEEEECS
T ss_pred -CCCEEEEEEeC
Confidence 34567788863
No 37
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.72 E-value=6.2e-18 Score=194.06 Aligned_cols=183 Identities=9% Similarity=0.091 Sum_probs=137.6
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCC---CCCeEEEeecCCCe-EEEEEeCCe
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNP---GGRLIGMSWSEDQT-LICVVQDGT 109 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~---~~~I~~~~fs~de~-Lv~v~~dGt 109 (839)
....+++||+|..||+.. .+++|+||+..| ++.++. |.. ...+.+++|||||+ |++++.||+
T Consensus 87 ~V~~vawSPdG~~LAs~s------------~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGt 152 (588)
T 2j04_A 87 YPRVCKPSPIDDWMAVLS------------NNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGE 152 (588)
T ss_dssp CEEEEEECSSSSCEEEEE------------TTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSE
T ss_pred cEEEEEECCCCCEEEEEe------------CCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCE
Confidence 456999999999999997 689999999777 777777 551 12599999999998 689999999
Q ss_pred EEEEeCCCCc--------ccc----CCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCceE----EEcCCCCC
Q 003205 110 VYRYNIHAEL--------IEP----NASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKV----CELARPEV 173 (839)
Q Consensus 110 v~l~~~~G~~--------~~~----~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~~----~~l~~~~~ 173 (839)
|++|++.+.. ... ..|| ...|..+.++|+| +++.+..+-..+|++.+... ..+..
T Consensus 153 VkIWd~~~~~l~~~~~i~l~ti~~~~~gh-----~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~--- 223 (588)
T 2j04_A 153 LQFFSIRKNSENTPEFYFESSIRLSDAGS-----KDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQN--- 223 (588)
T ss_dssp EEEEECCCCTTTCCCCEEEEEEECSCTTC-----CCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEEC---
T ss_pred EEEEECCCCccccccceeeeeeecccccc-----cccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecc---
Confidence 9999976652 122 2556 6789999999999 55555555566777765432 22321
Q ss_pred CCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEE--CCCCcEEEEeecCCeEEEEecC
Q 003205 174 EELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAV--SPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 174 ~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~--Spng~~iA~~~~~g~i~i~ssd 246 (839)
++....|.+ .|| |+.++.++ +++|++|+..+.. .+|.++|..|+| ||||+.||++.++|+ ++|..|
T Consensus 224 ~h~~~V~sv---aFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 224 ASRRKITDL---KIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCSSCCCCE---EEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred cccCcEEEE---EEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 011222323 566 57777666 7999999988765 378899999999 999999999999999 888765
No 38
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.71 E-value=1.5e-15 Score=163.03 Aligned_cols=230 Identities=12% Similarity=0.140 Sum_probs=159.2
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC---CCceeEEEecCCCCCeEEEeecCC--Ce-EEEEEeC
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA---GVLISETVWKNPGGRLIGMSWSED--QT-LICVVQD 107 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~---G~ll~ti~~~~~~~~I~~~~fs~d--e~-Lv~v~~d 107 (839)
....++++|+|..||+.+ .|++|+||+.. ++++.++..|. +.|.++.|+++ +. |++++.|
T Consensus 11 ~V~~~~~s~~g~~las~s------------~D~~v~iw~~~~~~~~~~~~l~gH~--~~V~~v~~s~~~~g~~l~s~s~D 76 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCS------------SDKTIKIFEVEGETHKLIDTLTGHE--GPVWRVDWAHPKFGTILASCSYD 76 (297)
T ss_dssp CEEEEEECTTSSEEEEEE------------TTSCEEEEEBCSSCBCCCEEECCCS--SCEEEEEECCGGGCSEEEEEETT
T ss_pred ceEEEEECCCCCEEEEEe------------CCCEEEEEecCCCCcEEEEEEcccc--CCeEEEEecCCCcCCEEEEEcCC
Confidence 455789999999999987 58999999975 46889999998 99999999863 54 7899999
Q ss_pred CeEEEEeCC-CCc--cccCCCCCccccccCeEEEEEECC--eEEEEecCC-eEEEEecCCCce---EEEcCCCCCCCCCc
Q 003205 108 GTVYRYNIH-AEL--IEPNASMGKECFEENVVECVFWGN--GVVCVTEAN-RYFCMADFATMK---VCELARPEVEELPH 178 (839)
Q Consensus 108 Gtv~l~~~~-G~~--~~~~~g~~~~~~~~~V~~~~~~~~--G~v~~t~~~-~~~~v~~~~~~~---~~~l~~~~~~~~~~ 178 (839)
|+|++|++. |+. .....+| ...|..+.+.++ |..+++.+. ....++++.... ...+.. +...
T Consensus 77 ~~v~iWd~~~~~~~~~~~~~~h-----~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~----h~~~ 147 (297)
T 2pm7_B 77 GKVMIWKEENGRWSQIAVHAVH-----SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDA----HAIG 147 (297)
T ss_dssp TEEEEEEBSSSCBCCCEEECCC-----SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEEC----CSSC
T ss_pred CEEEEEEcCCCceEEEEEeecC-----CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeec----ccCc
Confidence 999999875 432 2334456 567999999986 766666533 234455554321 112211 2222
Q ss_pred eEEEeCCCCCCC-------------CcEEEEEEeCCeEEEEecCCcc---------cccCCCceEEEECCCC---cEEEE
Q 003205 179 CVAVIEPKYTMT-------------GSVEVLIGTDAGILMLDEDGVQ---------KVDDTLSQKMAVSPNG---NFVAC 233 (839)
Q Consensus 179 ~w~vi~~~~S~~-------------~~~~v~~s~d~tv~l~~~~~~~---------~~~~~~i~~ia~Spng---~~iA~ 233 (839)
..++ .|+|+ +..++..+.|++|++|+..... ..|.++|..++|||+| +++|+
T Consensus 148 v~~~---~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las 224 (297)
T 2pm7_B 148 VNSA---SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224 (297)
T ss_dssp EEEE---EECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred cceE---eecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE
Confidence 2333 33333 5788999999999999875321 4688899999999995 89999
Q ss_pred eecCCeEEEEecCCCCc-cccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCC--CceEeccCCCeEEeecCCc-eE
Q 003205 234 FTHDGRLVVNNTNFSSP-VIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQA--EPVQYFYDEPLVLIPECDG-VR 309 (839)
Q Consensus 234 ~~~~g~i~i~ssd~~~~-l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~--~~v~f~~~~~~~l~~E~DG-vR 309 (839)
++.||+|+||+.+-... ........ .++.+ ..+.|.+++..+++...|| ||
T Consensus 225 ~s~D~~v~iWd~~~~~~~~~~~~~~~-------------------------~~~~~~v~~~~~s~~g~~las~~~D~~v~ 279 (297)
T 2pm7_B 225 VSQDRTCIIWTQDNEQGPWKKTLLKE-------------------------EKFPDVLWRASWSLSGNVLALSGGDNKVT 279 (297)
T ss_dssp EETTSCEEEEEESSTTSCCEEEESSS-------------------------SCCSSCEEEEEECSSSCCEEEEETTSCEE
T ss_pred EECCCcEEEEEeCCCCCccceeeeec-------------------------ccCCCcEEEEEECCCCCEEEEEcCCCcEE
Confidence 99999999998642110 00000000 00111 1467778888888888898 99
Q ss_pred EEccC
Q 003205 310 ILSNS 314 (839)
Q Consensus 310 Iit~~ 314 (839)
||...
T Consensus 280 lw~~~ 284 (297)
T 2pm7_B 280 LWKEN 284 (297)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99765
No 39
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.71 E-value=2.5e-16 Score=169.68 Aligned_cols=277 Identities=10% Similarity=0.072 Sum_probs=185.3
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CC-CCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SA-GVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYR 112 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~-G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l 112 (839)
...+++||+|..+|+..++ +.+.+|. .. +.++..+ .|. +.|.++.|+|++++++...||+|++
T Consensus 12 v~~~~~s~dg~~~~~~~~~------------~~~~~~~~~~~~~~~~~~-~h~--~~v~~~~~~~~~~~l~~~~dg~i~i 76 (337)
T 1gxr_A 12 AYSFHVTADGQMQPVPFPP------------DALIGPGIPRHARQINTL-NHG--EVVCAVTISNPTRHVYTGGKGCVKV 76 (337)
T ss_dssp CCEEEECSSSCEEECCCCT------------TSSSSTTCCSEEEEEEEE-CCS--SCCCEEEECSSSSEEEEECBSEEEE
T ss_pred eeEEEECCCCCEEEeecCC------------CcEeccccCCccccceec-cCC--CceEEEEEecCCcEEEEcCCCeEEE
Confidence 4578999999999987632 2222222 22 2333333 466 8999999999999765555999999
Q ss_pred EeCCCC-ccccC-----CCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCceE---EEcCCCCCCCCCceEEE
Q 003205 113 YNIHAE-LIEPN-----ASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKV---CELARPEVEELPHCVAV 182 (839)
Q Consensus 113 ~~~~G~-~~~~~-----~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~~---~~l~~~~~~~~~~~w~v 182 (839)
|++... ..... .+| ...|..+.++++|..+++.+. ....++++..+.. ..+.. .....+++
T Consensus 77 w~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~i~~~ 147 (337)
T 1gxr_A 77 WDISHPGNKSPVSQLDCLNR-----DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS----SAPACYAL 147 (337)
T ss_dssp EETTSTTCCSCSEEEECSCT-----TSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEEC----SSSCEEEE
T ss_pred EECCCCCceeeeecccccCC-----CCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeeccc----CCCceEEE
Confidence 987532 21111 145 567999999998876666532 3344566654431 22221 22333333
Q ss_pred eCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCC
Q 003205 183 IEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCE 257 (839)
Q Consensus 183 i~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~ 257 (839)
.|+|+++.++..+.|++|++|+..... ..+.+++..+++||+|+++++.+.+|++.+|+..-.+.+..+...
T Consensus 148 ---~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 224 (337)
T 1gxr_A 148 ---AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT 224 (337)
T ss_dssp ---EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred ---EECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCC
Confidence 456699999999999999999987543 457889999999999999999999999999997756665555432
Q ss_pred CCCCCCceeee---------cCceEEEEecC----EEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEccCcceeeec
Q 003205 258 SALPPEQIAWC---------GMDSVLLYWND----MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQR 321 (839)
Q Consensus 258 ~~~~p~~~~Wc---------G~d~vv~~~~~----~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~ 321 (839)
..+..+.|+ +.|..+..|+- ...+.++.+. .+.|.+++..+++...|| +++|.....+.+..
T Consensus 225 --~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~ 302 (337)
T 1gxr_A 225 --SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ 302 (337)
T ss_dssp --SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred --CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE
Confidence 345667775 33444445532 3455555554 688888899888888998 99999887777644
Q ss_pred cchhhHhhhccCCCChhhhH
Q 003205 322 VPASTEQIFAIGSTSPAALL 341 (839)
Q Consensus 322 Vp~~~~~vf~igS~~pga~L 341 (839)
. .+...|..+..++.+..|
T Consensus 303 ~-~~~~~v~~~~~s~~~~~l 321 (337)
T 1gxr_A 303 S-KESSSVLSCDISVDDKYI 321 (337)
T ss_dssp E-ECSSCEEEEEECTTSCEE
T ss_pred e-cCCCcEEEEEECCCCCEE
Confidence 3 234445555445444443
No 40
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.71 E-value=8.2e-15 Score=157.77 Aligned_cols=250 Identities=11% Similarity=0.077 Sum_probs=178.9
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC-C---ceeEEE--ecCCCCCeEEEeecCCCe-EEEEE
Q 003205 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-V---LISETV--WKNPGGRLIGMSWSEDQT-LICVV 105 (839)
Q Consensus 33 l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G-~---ll~ti~--~~~~~~~I~~~~fs~de~-Lv~v~ 105 (839)
-....++++|+|..+|+.. ++.|++|+... . .+.++. .+. +.|.++.|+|+++ +++++
T Consensus 52 ~~v~~~~~~~~~~~l~~~~-------------dg~i~iw~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~ 116 (337)
T 1gxr_A 52 EVVCAVTISNPTRHVYTGG-------------KGCVKVWDISHPGNKSPVSQLDCLNRD--NYIRSCKLLPDGCTLIVGG 116 (337)
T ss_dssp SCCCEEEECSSSSEEEEEC-------------BSEEEEEETTSTTCCSCSEEEECSCTT--SBEEEEEECTTSSEEEEEE
T ss_pred CceEEEEEecCCcEEEEcC-------------CCeEEEEECCCCCceeeeecccccCCC--CcEEEEEEcCCCCEEEEEc
Confidence 3556899999999999874 68999999643 2 445555 455 8899999999997 67899
Q ss_pred eCCeEEEEeCCC-C--ccccCCCCCccccccCeEEEEEECCeEEEEec--CCeEEEEecCCCce-EEEcCCCCCCCCCce
Q 003205 106 QDGTVYRYNIHA-E--LIEPNASMGKECFEENVVECVFWGNGVVCVTE--ANRYFCMADFATMK-VCELARPEVEELPHC 179 (839)
Q Consensus 106 ~dGtv~l~~~~G-~--~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~--~~~~~~v~~~~~~~-~~~l~~~~~~~~~~~ 179 (839)
.||+|++|++.. + ......+| ...|..+.+.++|..+++. ++.+ .++++.+.. ...+.. .....
T Consensus 117 ~d~~i~~~d~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~v-~~~d~~~~~~~~~~~~----~~~~i 186 (337)
T 1gxr_A 117 EASTLSIWDLAAPTPRIKAELTSS-----APACYALAISPDSKVCFSCCSDGNI-AVWDLHNQTLVRQFQG----HTDGA 186 (337)
T ss_dssp SSSEEEEEECCCC--EEEEEEECS-----SSCEEEEEECTTSSEEEEEETTSCE-EEEETTTTEEEEEECC----CSSCE
T ss_pred CCCcEEEEECCCCCcceeeecccC-----CCceEEEEECCCCCEEEEEeCCCcE-EEEeCCCCceeeeeec----ccCce
Confidence 999999998754 3 23334445 5678889999988666665 3444 456665443 233321 12222
Q ss_pred EEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcccccc
Q 003205 180 VAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDES 255 (839)
Q Consensus 180 w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~ 255 (839)
.++ .++|+++.++..+.|++|++|+..... ..+.+++..+++||+|+++|+.+.+|++.+|+.+-.+.. .+.
T Consensus 187 ~~~---~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~ 262 (337)
T 1gxr_A 187 SCI---DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLH 262 (337)
T ss_dssp EEE---EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EEC
T ss_pred EEE---EECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEc
Confidence 333 456699999999999999999987544 346778999999999999999999999999997744433 333
Q ss_pred CCCCCCCCceeee---------cCceEEEEecC----EEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEc
Q 003205 256 CESALPPEQIAWC---------GMDSVLLYWND----MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILS 312 (839)
Q Consensus 256 ~~~~~~p~~~~Wc---------G~d~vv~~~~~----~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit 312 (839)
.+ ...+..+.|+ +.|..+..|+- .+...++.+. .+.|.+++..+++..-|| |+||.
T Consensus 263 ~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 263 LH-ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp CC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CC-ccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 33 3456667776 45666666752 3444445444 677888888888888998 99986
No 41
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.2e-16 Score=183.51 Aligned_cols=244 Identities=6% Similarity=-0.079 Sum_probs=175.1
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEE
Q 003205 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYR 112 (839)
Q Consensus 33 l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l 112 (839)
.....|++||+|..||+++ .|.+|+ +|++..++..|. +.|.++.|+|+| .++++.+
T Consensus 16 ~~v~sv~~SpDG~~iASas------------~D~TV~----d~~~~~~l~gh~--~~v~~V~FsPdg------~~~~~~~ 71 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTF------------PDISIG----QPKYAKDINCNS--KNLFHVKEFPLE------FENKLDF 71 (588)
T ss_dssp SSSCCEEECTTSCEEEECS------------SSEEEE----EECCCSCCSSBG--GGTEEEEEECCC------CCCTTTT
T ss_pred ccEEEEEECCCCCEEEEEc------------CCceee----cccccceecCCC--ccEEEEEECCCC------CcceEEE
Confidence 3456899999999999997 589999 488888888888 999999999999 6888888
Q ss_pred EeCCCCccccCCCCCccccccCeEEEEEECCeEEEEecC--CeEEEEecCCCceEEEcCCCCCC-CCCceEEEeCCCCCC
Q 003205 113 YNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEA--NRYFCMADFATMKVCELARPEVE-ELPHCVAVIEPKYTM 189 (839)
Q Consensus 113 ~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~--~~~~~v~~~~~~~~~~l~~~~~~-~~~~~w~vi~~~~S~ 189 (839)
|+..|... +..++ +..|..++++|+|..+++.+ +.+ .+|+.++ ....+. .... ..-...++ .|||
T Consensus 72 ~~~~~~~~-~~~~~-----~~~V~~vawSPdG~~LAs~s~dg~V-~iwd~~~-~l~~l~-~~~~~~~~sv~sv---afSP 139 (588)
T 2j04_A 72 ELAQQNGL-LNSQP-----VCYPRVCKPSPIDDWMAVLSNNGNV-SVFKDNK-MLTNLD-SKGNLSSRTYHCF---EWNP 139 (588)
T ss_dssp SCCCSSCS-STTSC-----SCCEEEEEECSSSSCEEEEETTSCE-EEEETTE-EEEECC-CSSCSTTTCEEEE---EECS
T ss_pred EeCCCceE-eecCC-----CCcEEEEEECCCCCEEEEEeCCCcE-EEEeCCc-eeeecc-CCCccccccEEEE---EEcC
Confidence 87665553 34455 56799999999998777754 444 4555433 333332 1100 01123444 7888
Q ss_pred CCcEEEEEEeCCeEEEEecCCcc----------------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcc--
Q 003205 190 TGSVEVLIGTDAGILMLDEDGVQ----------------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPV-- 251 (839)
Q Consensus 190 ~~~~~v~~s~d~tv~l~~~~~~~----------------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l-- 251 (839)
||+.+++++.||+|.+|+..+.. .+|.++|.++++|||| +|+++.|+++++|+.+-+...
T Consensus 140 DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~ 217 (588)
T 2j04_A 140 IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPV 217 (588)
T ss_dssp SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCC
T ss_pred CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccc
Confidence 99999999999999999988541 3455789999999999 777888999999987633321
Q ss_pred -ccccCCCCCCCCceeeec------CceEEEEecC----E-EEEEcCCCC--ceEe--ccCCCeEEeecCCceEEEccC
Q 003205 252 -IDESCESALPPEQIAWCG------MDSVLLYWND----M-LVMVAPQAE--PVQY--FYDEPLVLIPECDGVRILSNS 314 (839)
Q Consensus 252 -~e~~~~~~~~p~~~~WcG------~d~vv~~~~~----~-l~lig~~~~--~v~f--~~~~~~~l~~E~DGvRIit~~ 314 (839)
.++.......+.+++|.| .+..|..|+- . ....|+.+. .+.| ++|+..++++..||.|+|..+
T Consensus 218 ~~tL~~~h~~~V~svaFsg~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~~d 296 (588)
T 2j04_A 218 SRMIQNASRRKITDLKIVDYKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLLED 296 (588)
T ss_dssp EEEEECCCSSCCCCEEEETTEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEESS
T ss_pred eeeecccccCcEEEEEEECCEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEeec
Confidence 123212235788999963 2344555652 2 333377765 6778 777888899999999999887
No 42
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.71 E-value=9.8e-16 Score=164.84 Aligned_cols=257 Identities=10% Similarity=0.133 Sum_probs=187.7
Q ss_pred CCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEec
Q 003205 73 SAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTE 150 (839)
Q Consensus 73 ~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~ 150 (839)
+...+..++..|. +.|.++.|+|+++ |++++.||+|++|+. .|+......+| ...|..+.++++|..++++
T Consensus 11 ~~~~~~~~~~gh~--~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~ 83 (312)
T 4ery_A 11 PNYALKFTLAGHT--KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-----KLGISDVAWSSDSNLLVSA 83 (312)
T ss_dssp CCCEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-----SSCEEEEEECTTSSEEEEE
T ss_pred CCceeEEEEcccC--CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccC-----CCceEEEEEcCCCCEEEEE
Confidence 4566777888888 9999999999997 579999999999985 67776666777 6789999999999888876
Q ss_pred CC-eEEEEecCCCce-EEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEE
Q 003205 151 AN-RYFCMADFATMK-VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMA 223 (839)
Q Consensus 151 ~~-~~~~v~~~~~~~-~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia 223 (839)
+. ....+|++.... ...+.. +....+++ .|+|+++.++..+.|++|++||..... ..+..++..++
T Consensus 84 ~~d~~i~vwd~~~~~~~~~~~~----~~~~v~~~---~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 156 (312)
T 4ery_A 84 SDDKTLKIWDVSSGKCLKTLKG----HSNYVFCC---NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 156 (312)
T ss_dssp ETTSEEEEEETTTCCEEEEEEC----CSSCEEEE---EECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred CCCCEEEEEECCCCcEEEEEcC----CCCCEEEE---EEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEE
Confidence 43 355677776443 233321 22233333 466799999999999999999987543 46778999999
Q ss_pred ECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeee---------cCceEEEEecC-----EEEEEcCCCC
Q 003205 224 VSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC---------GMDSVLLYWND-----MLVMVAPQAE 289 (839)
Q Consensus 224 ~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~Wc---------G~d~vv~~~~~-----~l~lig~~~~ 289 (839)
+||+|+++++++.||+|.+|+..-.+.+..+..........+.|. +.|..+..|+- ...+.|+.+.
T Consensus 157 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 236 (312)
T 4ery_A 157 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 236 (312)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCS
T ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCc
Confidence 999999999999999999999765555544433222233345554 55666777753 2234455443
Q ss_pred ----ceEecc-CCCeEEeecCCc-eEEEccCcceeeeccchhhHhhhccCCCChhhhHHH
Q 003205 290 ----PVQYFY-DEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYD 343 (839)
Q Consensus 290 ----~v~f~~-~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~~~~vf~igS~~pga~L~~ 343 (839)
...+.. ++..+++...|| ||||+....+.++++..+...|..+...+.+.+|+.
T Consensus 237 ~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s 296 (312)
T 4ery_A 237 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 296 (312)
T ss_dssp SSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred eEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEE
Confidence 233443 466778888999 999999999999999998888887777666665543
No 43
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1e-15 Score=170.28 Aligned_cols=253 Identities=10% Similarity=0.098 Sum_probs=183.1
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYR 112 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l 112 (839)
....++++|+|..+|+.. .++.|++|+.+|+.+.++..|. +.|.++.|+|++. |++++.||+|++
T Consensus 110 ~v~~~~~s~~~~~l~~~~------------~dg~i~i~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~i 175 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGV------------ENGELRLWNKTGALLNVLNFHR--APIVSVKWNKDGTHIISMDVENVTIL 175 (425)
T ss_dssp CEEEEEECTTSSEEEEEE------------TTSCEEEEETTSCEEEEECCCC--SCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred ceEEEEEcCCCCEEEEEe------------CCCeEEEEeCCCCeeeeccCCC--ccEEEEEECCCCCEEEEEecCCeEEE
Confidence 556889999999999986 5799999999999999999888 9999999999997 679999999999
Q ss_pred EeC-CCCccccCCCCCccccccC---------------eEEEEEECCeEEEEecCCeEEEEecCCCce-EEEcCCCCCCC
Q 003205 113 YNI-HAELIEPNASMGKECFEEN---------------VVECVFWGNGVVCVTEANRYFCMADFATMK-VCELARPEVEE 175 (839)
Q Consensus 113 ~~~-~G~~~~~~~g~~~~~~~~~---------------V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~-~~~l~~~~~~~ 175 (839)
|++ .|+.......+ ... |..+.+.++|.++.........++++.... ...+.. .
T Consensus 176 wd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~----~ 246 (425)
T 1r5m_A 176 WNVISGTVMQHFELK-----ETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIG----H 246 (425)
T ss_dssp EETTTTEEEEEECCC--------------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECC----C
T ss_pred EECCCCcEEEEeecc-----ccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeecc----C
Confidence 997 45543333323 122 677788887776655544334455555322 222221 1
Q ss_pred CCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCc
Q 003205 176 LPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSP 250 (839)
Q Consensus 176 ~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~ 250 (839)
.....++ .|+|++..++..+.|++|++|+..... ..+..++..+++||+| .+++++.+|+|.+|+..-.+.
T Consensus 247 ~~~i~~~---~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~ 322 (425)
T 1r5m_A 247 HGPISVL---EFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTL 322 (425)
T ss_dssp SSCEEEE---EEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEE
T ss_pred CCceEEE---EECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcE
Confidence 2222222 456699999999999999999987543 4578899999999999 999999999999999765666
Q ss_pred cccccCCCCCCCCceeee---------cCceEEEEecC------------------------E-EEEEcCCC--C--ceE
Q 003205 251 VIDESCESALPPEQIAWC---------GMDSVLLYWND------------------------M-LVMVAPQA--E--PVQ 292 (839)
Q Consensus 251 l~e~~~~~~~~p~~~~Wc---------G~d~vv~~~~~------------------------~-l~lig~~~--~--~v~ 292 (839)
+..+..+ ...+..+.|+ +.|..+..|+- . -.+.++.+ . .+.
T Consensus 323 ~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 401 (425)
T 1r5m_A 323 LALSIVD-GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLS 401 (425)
T ss_dssp EEEEECT-TCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEE
T ss_pred eEecccC-CccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEE
Confidence 6555544 3355566665 45666666642 1 23445533 3 688
Q ss_pred eccCCCeEEeecCCc-eEEEccC
Q 003205 293 YFYDEPLVLIPECDG-VRILSNS 314 (839)
Q Consensus 293 f~~~~~~~l~~E~DG-vRIit~~ 314 (839)
|.+++..+++...|| |+||.-+
T Consensus 402 ~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 402 WNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ECTTSSEEEEEESSSCCEEEECC
T ss_pred ccCCCceEEEEecCceEEEEeec
Confidence 888898888999998 9999754
No 44
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.70 E-value=7.2e-16 Score=197.44 Aligned_cols=285 Identities=14% Similarity=0.148 Sum_probs=209.1
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVY 111 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~ 111 (839)
....++++|+|..+|+.+ .+++|+||+ .+|+.+.++..|. +.|.++.|+|++. |++++.||+|+
T Consensus 617 ~v~~~~~s~~~~~l~s~~------------~d~~i~vw~~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~d~~v~ 682 (1249)
T 3sfz_A 617 AVYHACFSQDGQRIASCG------------ADKTLQVFKAETGEKLLDIKAHE--DEVLCCAFSSDDSYIATCSADKKVK 682 (1249)
T ss_dssp CEEEEEECTTSSEEEEEE------------TTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEE
T ss_pred cEEEEEECCCCCEEEEEe------------CCCeEEEEECCCCCEEEEeccCC--CCEEEEEEecCCCEEEEEeCCCeEE
Confidence 456889999999999987 589999999 5789999999998 9999999999997 57999999999
Q ss_pred EEeC-CCCccccCCCCCccccccCeEEEEEEC--CeEEEEecCCe-EEEEecCCCce-EEEcCCCCCCCCCceEEEeCCC
Q 003205 112 RYNI-HAELIEPNASMGKECFEENVVECVFWG--NGVVCVTEANR-YFCMADFATMK-VCELARPEVEELPHCVAVIEPK 186 (839)
Q Consensus 112 l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~--~G~v~~t~~~~-~~~v~~~~~~~-~~~l~~~~~~~~~~~w~vi~~~ 186 (839)
+|++ .|+......+| ...|..+.|++ ++.++++++.+ ...+|++.+.. ...+.. +....+++ .
T Consensus 683 vwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~----h~~~v~~~---~ 750 (1249)
T 3sfz_A 683 IWDSATGKLVHTYDEH-----SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG----HTNSVNHC---R 750 (1249)
T ss_dssp EEETTTCCEEEEEECC-----SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC----CSSCEEEE---E
T ss_pred EEECCCCceEEEEcCC-----CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC----CCCCEEEE---E
Confidence 9986 57776666677 67899999988 66677775432 34566666443 223321 22222222 4
Q ss_pred CCCCCcEEEEEEeCCeEEEEecCCcc------------------------------------------------------
Q 003205 187 YTMTGSVEVLIGTDAGILMLDEDGVQ------------------------------------------------------ 212 (839)
Q Consensus 187 ~S~~~~~~v~~s~d~tv~l~~~~~~~------------------------------------------------------ 212 (839)
|||+|..+++.+.||+|.+|+.....
T Consensus 751 ~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~ 830 (1249)
T 3sfz_A 751 FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSG 830 (1249)
T ss_dssp ECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCC
T ss_pred EecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCC
Confidence 55577777777777777777754210
Q ss_pred ------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeee---------cCceEEEEe
Q 003205 213 ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC---------GMDSVLLYW 277 (839)
Q Consensus 213 ------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~Wc---------G~d~vv~~~ 277 (839)
..+.+++..++|||+|+++|+++.+|++.+|+.+-...+..+..+ ...+..+.|+ +.|..+..|
T Consensus 831 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h-~~~v~~v~~spdg~~l~s~s~dg~v~vw 909 (1249)
T 3sfz_A 831 LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH-LSWVHGVMFSPDGSSFLTASDDQTIRVW 909 (1249)
T ss_dssp EEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCC-ccceEEEEECCCCCEEEEEeCCCeEEEE
Confidence 145677899999999999999999999999998766666666555 3455666665 456666666
Q ss_pred cCE---------------------------------E-EEEcC--------CC--CceEeccCCCeEEeecCCc-eEEEc
Q 003205 278 NDM---------------------------------L-VMVAP--------QA--EPVQYFYDEPLVLIPECDG-VRILS 312 (839)
Q Consensus 278 ~~~---------------------------------l-~lig~--------~~--~~v~f~~~~~~~l~~E~DG-vRIit 312 (839)
+-. + ..-+. .+ ..+.|++++..+++...|| |++|.
T Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d 989 (1249)
T 3sfz_A 910 ETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIE 989 (1249)
T ss_dssp EHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEE
T ss_pred EccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEE
Confidence 410 0 01111 11 2567888888899999998 99999
Q ss_pred cCcceeeeccchhhHhhhccCCCChhhhHHHHH
Q 003205 313 NSSMEFLQRVPASTEQIFAIGSTSPAALLYDAL 345 (839)
Q Consensus 313 ~~~~~~l~~Vp~~~~~vf~igS~~pga~L~~A~ 345 (839)
......+...+.+...|..+..++.|..|+.+.
T Consensus 990 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 1022 (1249)
T 3sfz_A 990 LPNNRVFSSGVGHKKAVRHIQFTADGKTLISSS 1022 (1249)
T ss_dssp TTTTSCEEECCCCSSCCCCEEECSSSSCEEEEC
T ss_pred cCCCceeeecccCCCceEEEEECCCCCEEEEEc
Confidence 999999999999988888888887777776543
No 45
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.70 E-value=2e-15 Score=163.74 Aligned_cols=190 Identities=13% Similarity=0.146 Sum_probs=147.7
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVY 111 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~ 111 (839)
....++++|+|..+|+.+ .|++|+||+ ..|+.+.++..|. +.|.++.|+|++. +++++.||+|+
T Consensus 67 ~v~~~~~s~dg~~l~s~s------------~D~~v~~wd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~s~D~~i~ 132 (319)
T 3frx_A 67 IVQDCTLTADGAYALSAS------------WDKTLRLWDVATGETYQRFVGHK--SDVMSVDIDKKASMIISGSRDKTIK 132 (319)
T ss_dssp CEEEEEECTTSSEEEEEE------------TTSEEEEEETTTTEEEEEEECCS--SCEEEEEECTTSCEEEEEETTSCEE
T ss_pred cEEEEEECCCCCEEEEEe------------CCCEEEEEECCCCCeeEEEccCC--CcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 445789999999999986 689999999 4789999999998 9999999999987 68999999999
Q ss_pred EEeCCCCccccCCCCCccccccCeEEEEEECC------eEEEEecCC-eEEEEecCCCceEE-EcCCCCCCCCCceEEEe
Q 003205 112 RYNIHAELIEPNASMGKECFEENVVECVFWGN------GVVCVTEAN-RYFCMADFATMKVC-ELARPEVEELPHCVAVI 183 (839)
Q Consensus 112 l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~------G~v~~t~~~-~~~~v~~~~~~~~~-~l~~~~~~~~~~~w~vi 183 (839)
+|++.|+......+| ...|..+.+.++ |..+++.+. ....+|++...... .+.. +....+++
T Consensus 133 vwd~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~----h~~~v~~~- 202 (319)
T 3frx_A 133 VWTIKGQCLATLLGH-----NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG----HNSNINTL- 202 (319)
T ss_dssp EEETTSCEEEEECCC-----SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECC----CCSCEEEE-
T ss_pred EEECCCCeEEEEecc-----CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecC----CCCcEEEE-
Confidence 999999887777888 677888888774 445666533 34556777654322 2221 23333444
Q ss_pred CCCCCCCCcEEEEEEeCCeEEEEecCCcc----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCc
Q 003205 184 EPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSP 250 (839)
Q Consensus 184 ~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~ 250 (839)
.|||+|..++..+.|++|++||..... .....++..++|||+|.++|..+.+ .+.+|+.+....
T Consensus 203 --~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~ 270 (319)
T 3frx_A 203 --TASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYL 270 (319)
T ss_dssp --EECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEE
T ss_pred --EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCee
Confidence 567799999999999999999988654 3346789999999999999998765 588887664433
No 46
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.70 E-value=1e-14 Score=161.51 Aligned_cols=266 Identities=9% Similarity=0.045 Sum_probs=175.7
Q ss_pred CCCCEEEEcC-CCCeEEEEecCchhhhhhcccCCceEEEEcCC-CCceeEEE-------------ecCCCCCeEEEeecC
Q 003205 33 LSRNKVACAP-FGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISETV-------------WKNPGGRLIGMSWSE 97 (839)
Q Consensus 33 l~~~~va~sp-~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G~ll~ti~-------------~~~~~~~I~~~~fs~ 97 (839)
-....++++| +|..+|+.. .+++|+||+.. |.....+. .|. +.|.++.|+|
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~ 109 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGG------------SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR--YSVETVQWYP 109 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEE------------TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS--SCEEEEEECT
T ss_pred CcEEEEEEecCCCCEEEEEc------------CCCeEEEEECCCCcccceEeccccccccccccccCC--CcEEEEEEcc
Confidence 3556899999 999999986 58999999965 45555444 366 8999999999
Q ss_pred -CCe-EEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEEC---CeEEEEec--CCeEEEEecCCCce-EEEcC
Q 003205 98 -DQT-LICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWG---NGVVCVTE--ANRYFCMADFATMK-VCELA 169 (839)
Q Consensus 98 -de~-Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~---~G~v~~t~--~~~~~~v~~~~~~~-~~~l~ 169 (839)
++. +++++.||+|++|++..........+ ...+..+.+.+ +|..++++ ++.+ .++++..+. ...+.
T Consensus 110 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~d~~~~~~~~~~~ 183 (408)
T 4a11_B 110 HDTGMFTSSSFDKTLKVWDTNTLQTADVFNF-----EETVYSHHMSPVSTKHCLVAVGTRGPKV-QLCDLKSGSCSHILQ 183 (408)
T ss_dssp TCTTCEEEEETTSEEEEEETTTTEEEEEEEC-----SSCEEEEEECSSCSSCCEEEEEESSSSE-EEEESSSSCCCEEEC
T ss_pred CCCcEEEEEeCCCeEEEeeCCCCccceeccC-----CCceeeeEeecCCCCCcEEEEEcCCCeE-EEEeCCCcceeeeec
Confidence 554 68999999999999764432222223 45677778776 43344443 4444 455555332 22332
Q ss_pred CCCCCCCCceEEEeCCCCCCCCc-EEEEEEeCCeEEEEecCCcc---------------------cccCCCceEEEECCC
Q 003205 170 RPEVEELPHCVAVIEPKYTMTGS-VEVLIGTDAGILMLDEDGVQ---------------------KVDDTLSQKMAVSPN 227 (839)
Q Consensus 170 ~~~~~~~~~~w~vi~~~~S~~~~-~~v~~s~d~tv~l~~~~~~~---------------------~~~~~~i~~ia~Spn 227 (839)
. +.....++ .|+|++. .++..+.|++|++|+..... ..+.++|..+++||+
T Consensus 184 ~----~~~~v~~~---~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (408)
T 4a11_B 184 G----HRQEILAV---SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD 256 (408)
T ss_dssp C----CCSCEEEE---EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred C----CCCcEEEE---EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence 1 12222223 4666888 57788889999999986321 356788999999999
Q ss_pred CcEEEEeecCCeEEEEecCCCCccccccCCC-------------CCCCCceeeecCceEEEEecC-----EEEEEcCCCC
Q 003205 228 GNFVACFTHDGRLVVNNTNFSSPVIDESCES-------------ALPPEQIAWCGMDSVLLYWND-----MLVMVAPQAE 289 (839)
Q Consensus 228 g~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~-------------~~~p~~~~WcG~d~vv~~~~~-----~l~lig~~~~ 289 (839)
|+++|+++.||+|.+|+..-.+....+.... ......+..+++|..+..|+- .-.+.|+.+.
T Consensus 257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 336 (408)
T 4a11_B 257 GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKT 336 (408)
T ss_dssp SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSC
T ss_pred CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCe
Confidence 9999999999999999976444332221110 011235555667777777862 2345556654
Q ss_pred --ceEeccCCCeEEeecCCc-eEEEccCcceeeeccchh
Q 003205 290 --PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPAS 325 (839)
Q Consensus 290 --~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~ 325 (839)
.+.|.+++..+++...|| |+||..+..+.+...+..
T Consensus 337 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 375 (408)
T 4a11_B 337 VDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDET 375 (408)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEEECC----------
T ss_pred EEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCce
Confidence 688999999999999999 999999988777655443
No 47
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.70 E-value=8.5e-15 Score=156.12 Aligned_cols=258 Identities=14% Similarity=0.151 Sum_probs=181.5
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVY 111 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~ 111 (839)
....+++ |+|+.+|+.. .+++|++|+. .|+.+..+..+. +.|.++.|+|++. +++++.||+++
T Consensus 20 ~v~~~~~-~~~~~l~s~~------------~dg~v~vw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 20 DVRDVVA-VDDSKVASVS------------RDGTVRLWSKDDQWLGTVVYTGQ--GFLNSVCYDSEKELLLFGGKDTMIN 84 (313)
T ss_dssp CEEEEEE-EETTEEEEEE------------TTSEEEEEEESSSEEEEEEEECS--SCEEEEEEETTTTEEEEEETTSCEE
T ss_pred CcEEEEe-cCCCEEEEEE------------cCCcEEEEECCCCEEEEEeecCC--ccEEEEEECCCCCEEEEecCCCeEE
Confidence 4557788 9999999886 5899999995 556677788887 9999999999987 58999999999
Q ss_pred EEeCCC----CccccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCC
Q 003205 112 RYNIHA----ELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKY 187 (839)
Q Consensus 112 l~~~~G----~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~ 187 (839)
+|++.. +......+| ...|..+.+.++-++..+.++.+.. ++ .......+... .....+....++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~l~~~~~d~~i~~-~d-~~~~~~~~~~~--~~~v~~~~~~~~-- 153 (313)
T 3odt_A 85 GVPLFATSGEDPLYTLIGH-----QGNVCSLSFQDGVVISGSWDKTAKV-WK-EGSLVYNLQAH--NASVWDAKVVSF-- 153 (313)
T ss_dssp EEETTCCTTSCC-CEECCC-----SSCEEEEEEETTEEEEEETTSEEEE-EE-TTEEEEEEECC--SSCEEEEEEEET--
T ss_pred EEEeeecCCCCcccchhhc-----ccCEEEEEecCCEEEEEeCCCCEEE-Ec-CCcEEEecccC--CCceeEEEEccC--
Confidence 998542 334444556 6678888875554444445555554 44 22223333220 012222223333
Q ss_pred CCCCcEEEEEEeCCeEEEEecCCcc---c-ccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCC
Q 003205 188 TMTGSVEVLIGTDAGILMLDEDGVQ---K-VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPE 263 (839)
Q Consensus 188 S~~~~~~v~~s~d~tv~l~~~~~~~---~-~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~ 263 (839)
+++.++..+.|++|++|+..... . .+..++..+++||+|+ +++++.+|+|.+|+..-.+.+.++..+ ...+.
T Consensus 154 --~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~ 229 (313)
T 3odt_A 154 --SENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH-ESFVY 229 (313)
T ss_dssp --TTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC-SSCEE
T ss_pred --CCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC-CceEE
Confidence 88999999999999999955443 2 3788899999999998 888999999999998767777666655 23455
Q ss_pred ceeee--------cCceEEEEecC-----EEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEccCcceeeecc
Q 003205 264 QIAWC--------GMDSVLLYWND-----MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRV 322 (839)
Q Consensus 264 ~~~Wc--------G~d~vv~~~~~-----~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~V 322 (839)
.+.|. |.|..+..|+- .-.+.++.+. .+.|.+++. +++...|| |+||..+..+++...
T Consensus 230 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 230 CIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp EEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred EEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 56665 56777777862 2345556554 678888887 55677888 999999877766544
No 48
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.69 E-value=1.1e-15 Score=168.60 Aligned_cols=255 Identities=11% Similarity=0.089 Sum_probs=188.3
Q ss_pred CCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCC
Q 003205 75 GVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN 152 (839)
Q Consensus 75 G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~ 152 (839)
.+...++..|. +.|.++.|+|++. |++++.||+|++|+. .|+.......+ ...|..+.|+|+|..+++++.
T Consensus 54 ~~~~~~l~gH~--~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~-----~~~v~~~~~sp~g~~lasg~~ 126 (354)
T 2pbi_B 54 MKTRRTLKGHG--NKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMP-----CTWVMACAYAPSGCAIACGGL 126 (354)
T ss_dssp CCEEEEEECCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS-----SSCCCEEEECTTSSEEEEEST
T ss_pred cEEEEEecCCC--CeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecC-----CCCEEEEEECCCCCEEEEeeC
Confidence 46778899999 9999999999987 689999999999984 55554434444 456889999999999998754
Q ss_pred e-EEEEecCCCc-------eEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCc
Q 003205 153 R-YFCMADFATM-------KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLS 219 (839)
Q Consensus 153 ~-~~~v~~~~~~-------~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i 219 (839)
+ ...++++... ....+.. +.....++ .|+|++..++..+.|++|++||..... ..|..++
T Consensus 127 d~~i~v~~~~~~~~~~~~~~~~~~~~----h~~~v~~~---~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v 199 (354)
T 2pbi_B 127 DNKCSVYPLTFDKNENMAAKKKSVAM----HTNYLSAC---SFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADV 199 (354)
T ss_dssp TSEEEEEECCCCTTCCSGGGCEEEEE----CSSCEEEE---EECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred CCCEEEEEEeccccccccccceeeec----cCCcEEEE---EEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCe
Confidence 3 3344443211 0111110 12222222 467799999999999999999987543 4678889
Q ss_pred eEEEECC--CCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeee---------cCceEEEEecC----EEEEE
Q 003205 220 QKMAVSP--NGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC---------GMDSVLLYWND----MLVMV 284 (839)
Q Consensus 220 ~~ia~Sp--ng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~Wc---------G~d~vv~~~~~----~l~li 284 (839)
..++++| +|+++|+++.||++.+|+..-.+.+..+..+ ...+..+.|. +.|..+..|+- .+...
T Consensus 200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~ 278 (354)
T 2pbi_B 200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH-ESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY 278 (354)
T ss_dssp EEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 9999988 5789999999999999997766666666555 2345555554 67777888862 44444
Q ss_pred cCCC-----CceEeccCCCeEEeecCCc-eEEEccCcceeeeccchhhHhhhccCCCChhhhHHHH
Q 003205 285 APQA-----EPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDA 344 (839)
Q Consensus 285 g~~~-----~~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~~~~vf~igS~~pga~L~~A 344 (839)
.... ..+.|.+++..+++..-|| ||||...+.+.+..++.|...|..+..++.|.+|+.+
T Consensus 279 ~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sg 344 (354)
T 2pbi_B 279 SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSG 344 (354)
T ss_dssp CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEE
Confidence 4332 2688999999999999998 9999998888888899999889888888877766543
No 49
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.69 E-value=2.1e-14 Score=153.64 Aligned_cols=253 Identities=13% Similarity=0.129 Sum_probs=174.1
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYR 112 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l 112 (839)
...++.||+| .||+.. |++|+|||. +|+.+.++..+...+.|.++.|+|+++ |++++.||+|++
T Consensus 28 ~~~l~WS~~~-~lAvg~-------------D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~i 93 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-------------DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL 93 (318)
T ss_dssp CBCEEECTTS-EEEEEE-------------TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ceEEEECCCC-EEEEEe-------------CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEE
Confidence 3468999875 888874 689999995 799999998765336799999999997 589999999999
Q ss_pred EeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCC-ceEEEcCCCCCCCCCceEEEeCCCCCCC
Q 003205 113 YNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFAT-MKVCELARPEVEELPHCVAVIEPKYTMT 190 (839)
Q Consensus 113 ~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~-~~~~~l~~~~~~~~~~~w~vi~~~~S~~ 190 (839)
|++ .|+......+| ...+......+..++....++.+..++.... .....+.. .......+ .++++
T Consensus 94 w~~~~~~~~~~~~~h-----~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~ 161 (318)
T 4ggc_A 94 WDVQQQKRLRNMTSH-----SARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG----HSQEVCGL---RWAPD 161 (318)
T ss_dssp EETTTTEEEEEEECC-----SSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC----CSSCEEEE---EECTT
T ss_pred eecCCceeEEEecCc-----cceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcC----ccCceEEE---EEcCC
Confidence 986 56666667777 4556655555454444444555544433222 22222221 12222222 34559
Q ss_pred CcEEEEEEeCCeEEEEecCCcc---------cccCCCceEEEECCCCcEE---EEeecCCeEEEEecCCCCccccccCCC
Q 003205 191 GSVEVLIGTDAGILMLDEDGVQ---------KVDDTLSQKMAVSPNGNFV---ACFTHDGRLVVNNTNFSSPVIDESCES 258 (839)
Q Consensus 191 ~~~~v~~s~d~tv~l~~~~~~~---------~~~~~~i~~ia~Spng~~i---A~~~~~g~i~i~ssd~~~~l~e~~~~~ 258 (839)
|..++..+.|++|++|+..... ..+.+++..++++|++..+ +..+.+++|.+|+.............
T Consensus 162 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~- 240 (318)
T 4ggc_A 162 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH- 240 (318)
T ss_dssp SSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS-
T ss_pred CCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce-
Confidence 9999999999999999976432 3567789999999988643 45567889999987655544333222
Q ss_pred CCCCCceeee----------c-CceEEEEecC-----EEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEccCc
Q 003205 259 ALPPEQIAWC----------G-MDSVLLYWND-----MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSNSS 315 (839)
Q Consensus 259 ~~~p~~~~Wc----------G-~d~vv~~~~~-----~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit~~~ 315 (839)
..+..+.|+ | .|..+..|+- .-.+.||.+. .+.|.+++..+++...|| ||||.-.+
T Consensus 241 -~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 241 -SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp -SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred -eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 233344443 2 5667777752 3456788775 788999999999999999 99997643
No 50
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.69 E-value=4e-15 Score=174.63 Aligned_cols=271 Identities=12% Similarity=0.127 Sum_probs=198.6
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC-C----CceeEEEecCCCCC-eEEEeecC--CCe-EEEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-G----VLISETVWKNPGGR-LIGMSWSE--DQT-LICV 104 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G----~ll~ti~~~~~~~~-I~~~~fs~--de~-Lv~v 104 (839)
....++++|+|..+|+.. ++.|+||+.. | +.+.++..|. +. |.++.|+| +++ |+++
T Consensus 20 ~v~~~~~spdg~~l~~~~-------------~~~v~v~~~~~~~~~~~~~~~~~~h~--~~~v~~~~~sp~~~~~~l~s~ 84 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPC-------------GKSAFVRCLDDGDSKVPPVVQFTGHG--SSVVTTVKFSPIKGSQYLCSG 84 (615)
T ss_dssp CCCCCEEETTTTEEEEEE-------------TTEEEEEECCSSCCSSCSEEEECTTT--TSCEEEEEECSSTTCCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-------------CCeEEEEECCCCCCccccceEEecCC--CceEEEEEECcCCCCCEEEEe
Confidence 456889999999999985 5789999975 6 7899999998 88 99999999 997 5799
Q ss_pred EeCCeEEEEeC-CC--------CccccCCCCCccccccCeEEEEEECCeEEEEecCCe-----EEEEecCCCceEEEcCC
Q 003205 105 VQDGTVYRYNI-HA--------ELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-----YFCMADFATMKVCELAR 170 (839)
Q Consensus 105 ~~dGtv~l~~~-~G--------~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-----~~~v~~~~~~~~~~l~~ 170 (839)
+.||+|++|++ .| +......+| ...|..+.|+++|..+++...+ ...+++.. .....+..
T Consensus 85 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~-~~~~~~~~ 158 (615)
T 1pgu_A 85 DESGKVIVWGWTFDKESNSVEVNVKSEFQVL-----AGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG-NSLGEVSG 158 (615)
T ss_dssp ETTSEEEEEEEEEEGGGTEEEEEEEEEEECC-----SSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC-CEEEECCS
T ss_pred cCCCEEEEEeCCCCcccccccccccchhhcc-----cccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC-Ccceeeec
Confidence 99999999997 34 444444456 6679999999999887776432 34455532 23333332
Q ss_pred CCCCCCCceEEEeCCCCCCCCc-EEEEEEeCCeEEEEecCCcc-----cccCC---CceEEEECCC-CcEEEEeecCCeE
Q 003205 171 PEVEELPHCVAVIEPKYTMTGS-VEVLIGTDAGILMLDEDGVQ-----KVDDT---LSQKMAVSPN-GNFVACFTHDGRL 240 (839)
Q Consensus 171 ~~~~~~~~~w~vi~~~~S~~~~-~~v~~s~d~tv~l~~~~~~~-----~~~~~---~i~~ia~Spn-g~~iA~~~~~g~i 240 (839)
+....+++ .|+|++. .++..+.|++|++|+..... ..+.+ +|..++|||+ |+++++++.+|+|
T Consensus 159 ----~~~~v~~~---~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 231 (615)
T 1pgu_A 159 ----HSQRINAC---HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKI 231 (615)
T ss_dssp ----CSSCEEEE---EECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCE
T ss_pred ----CCccEEEE---EECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeE
Confidence 22333333 5677888 78888889999999977543 45667 8999999999 9999999999999
Q ss_pred EEEecCCCCccccc-c---CCCCCCCCceeee--------cCceEEEEecC----E-EEEEcCC----CC--ceEeccCC
Q 003205 241 VVNNTNFSSPVIDE-S---CESALPPEQIAWC--------GMDSVLLYWND----M-LVMVAPQ----AE--PVQYFYDE 297 (839)
Q Consensus 241 ~i~ssd~~~~l~e~-~---~~~~~~p~~~~Wc--------G~d~vv~~~~~----~-l~lig~~----~~--~v~f~~~~ 297 (839)
.+|+..-.+.+.++ . .+ ...+..+.|+ +.|..+..|+- . ..+.++. .. .+.|+ ++
T Consensus 232 ~vwd~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 309 (615)
T 1pgu_A 232 SCFDGKSGEFLKYIEDDQEPV-QGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GN 309 (615)
T ss_dssp EEEETTTCCEEEECCBTTBCC-CSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ET
T ss_pred EEEECCCCCEeEEeccccccc-CCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CC
Confidence 99997766766666 3 33 3456677775 34555555642 1 2233331 11 34443 67
Q ss_pred CeEEeecCCc-eEEEccCcceeeeccchhhHhhhccCC
Q 003205 298 PLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIGS 334 (839)
Q Consensus 298 ~~~l~~E~DG-vRIit~~~~~~l~~Vp~~~~~vf~igS 334 (839)
..+++...|| +++|.....+.+..++.+...|..+..
T Consensus 310 ~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 347 (615)
T 1pgu_A 310 GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV 347 (615)
T ss_dssp TEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET
T ss_pred CeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe
Confidence 7788888898 999999988999988888877777666
No 51
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.69 E-value=5.1e-15 Score=166.83 Aligned_cols=260 Identities=10% Similarity=0.119 Sum_probs=180.8
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC-C-----------ceeEEEecCCC----------CCeE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-V-----------LISETVWKNPG----------GRLI 91 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G-~-----------ll~ti~~~~~~----------~~I~ 91 (839)
....++++|+|..+|+.. .++.|+||+... + ++.++..|... +.|.
T Consensus 30 ~V~~v~~s~~g~~la~g~------------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~ 97 (447)
T 3dw8_B 30 IISTVEFNHSGELLATGD------------KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN 97 (447)
T ss_dssp SEEEEEECSSSSEEEEEE------------TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCC
T ss_pred cEEEEEECCCCCEEEEEc------------CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceE
Confidence 456899999999999986 589999999654 3 37778877421 6699
Q ss_pred EEeecCCC---eEEEEEeCCeEEEEeCCCCcc-----------------------------------------ccCCCCC
Q 003205 92 GMSWSEDQ---TLICVVQDGTVYRYNIHAELI-----------------------------------------EPNASMG 127 (839)
Q Consensus 92 ~~~fs~de---~Lv~v~~dGtv~l~~~~G~~~-----------------------------------------~~~~g~~ 127 (839)
++.|+|++ .|++++.||+|++|++...-. .+..+|
T Consensus 98 ~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h- 176 (447)
T 3dw8_B 98 KIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH- 176 (447)
T ss_dssp EEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC-
T ss_pred EEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC-
Confidence 99999986 578999999999998643110 123456
Q ss_pred ccccccCeEEEEEECCeEEEEecCCeEEEEecCCC-ceEEE-c--CCCCC-CCCCceEEEeCCCCCCCC-cEEEEEEeCC
Q 003205 128 KECFEENVVECVFWGNGVVCVTEANRYFCMADFAT-MKVCE-L--ARPEV-EELPHCVAVIEPKYTMTG-SVEVLIGTDA 201 (839)
Q Consensus 128 ~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~-~~~~~-l--~~~~~-~~~~~~w~vi~~~~S~~~-~~~v~~s~d~ 201 (839)
...|..+.++++|..+++++.....+|++.. ..... + ....+ +.....+++ .|+|+| ..++..+.|+
T Consensus 177 ----~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~p~~~~~l~s~~~dg 249 (447)
T 3dw8_B 177 ----TYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAA---EFHPNSCNTFVYSSSKG 249 (447)
T ss_dssp ----SSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEE---EECSSCTTEEEEEETTS
T ss_pred ----CcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEE---EECCCCCcEEEEEeCCC
Confidence 6678999999999988888555667787762 22222 1 00001 122223333 577798 8999999999
Q ss_pred eEEEEecCCcc---------cccCC------------CceEEEECCCCcEEEEeecCCeEEEEecCC-CCccccccCCCC
Q 003205 202 GILMLDEDGVQ---------KVDDT------------LSQKMAVSPNGNFVACFTHDGRLVVNNTNF-SSPVIDESCESA 259 (839)
Q Consensus 202 tv~l~~~~~~~---------~~~~~------------~i~~ia~Spng~~iA~~~~~g~i~i~ssd~-~~~l~e~~~~~~ 259 (839)
+|++||..... ..+.. +|..++|||+|++||+++. |+|.+|+... .+.+..+..+..
T Consensus 250 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~ 328 (447)
T 3dw8_B 250 TIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEY 328 (447)
T ss_dssp CEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGG
T ss_pred eEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccc
Confidence 99999976421 23333 8999999999999999998 9999999764 666655554421
Q ss_pred CC--------------CCceeee---------cCceEEEEecC----EEEEEcCCC------------------------
Q 003205 260 LP--------------PEQIAWC---------GMDSVLLYWND----MLVMVAPQA------------------------ 288 (839)
Q Consensus 260 ~~--------------p~~~~Wc---------G~d~vv~~~~~----~l~lig~~~------------------------ 288 (839)
.. ...++|+ +.|..+..|+- .+.+.++..
T Consensus 329 ~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (447)
T 3dw8_B 329 LRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEI 408 (447)
T ss_dssp GTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCE
T ss_pred ccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccc
Confidence 10 1125665 56677777753 345444321
Q ss_pred -----------CceEeccCCCeEEeecCCceEEEccC
Q 003205 289 -----------EPVQYFYDEPLVLIPECDGVRILSNS 314 (839)
Q Consensus 289 -----------~~v~f~~~~~~~l~~E~DGvRIit~~ 314 (839)
..+.|.+++..++++--|++.+|+..
T Consensus 409 ~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~~ 445 (447)
T 3dw8_B 409 SVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQDK 445 (447)
T ss_dssp EGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEECC
T ss_pred cccccccCCceeEEEECCCCCEEEEEecceeeeeccc
Confidence 13778888888888888888888754
No 52
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.69 E-value=1.1e-15 Score=169.61 Aligned_cols=239 Identities=10% Similarity=-0.002 Sum_probs=162.7
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC--Cce---eEEEecCC---CCCeEEEeecCCCeE-EEEE-
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG--VLI---SETVWKNP---GGRLIGMSWSEDQTL-ICVV- 105 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G--~ll---~ti~~~~~---~~~I~~~~fs~de~L-v~v~- 105 (839)
...+++|+|..++...++...... ..+.++++++|+.+. ..+ ........ ...+..++|||||++ ++++
T Consensus 75 ~v~s~~~~~~~~~~g~~~~~~~l~-s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~ 153 (365)
T 4h5i_A 75 SPTAIDASKGIILVGCNENSTKIT-QGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASS 153 (365)
T ss_dssp CCCEEEEETTEEEEECCCCHHHHH-HTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEES
T ss_pred ceEEEEeCCCEEEEEECCCccEEE-EecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEEC
Confidence 355778888888887665433222 234689999998532 222 22322221 134889999999985 5555
Q ss_pred -eCCeEEEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCceEEEcCCCCCCCCCceEEEe
Q 003205 106 -QDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKVCELARPEVEELPHCVAVI 183 (839)
Q Consensus 106 -~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi 183 (839)
.||+|++||+......+.+.| ...|.++.|+|+|..+++.+. .+..++...+........ ..+...+.
T Consensus 154 ~~d~~i~iwd~~~~~~~~~~~~-----~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~ 223 (365)
T 4h5i_A 154 KVPAIMRIIDPSDLTEKFEIET-----RGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTD-----FDKNWSLS 223 (365)
T ss_dssp CSSCEEEEEETTTTEEEEEEEC-----SSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECC-----CCTTEEEE
T ss_pred CCCCEEEEeECCCCcEEEEeCC-----CCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeec-----CCCCCCEE
Confidence 689999999753332333445 556899999999998888654 466666554443322221 12223344
Q ss_pred CCCCCCCCcEEEEEEeCC----eEEEEecCCcc---------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCc
Q 003205 184 EPKYTMTGSVEVLIGTDA----GILMLDEDGVQ---------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSP 250 (839)
Q Consensus 184 ~~~~S~~~~~~v~~s~d~----tv~l~~~~~~~---------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~ 250 (839)
...|||+|..++.++.++ +++.|+..... ..+..+|..|+|||||++||+++.||+|.||+..-.+.
T Consensus 224 ~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~ 303 (365)
T 4h5i_A 224 KINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSM 303 (365)
T ss_dssp EEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcE
Confidence 447888999999999877 67788765332 35678899999999999999999999999998653443
Q ss_pred cccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEcc
Q 003205 251 VIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSN 313 (839)
Q Consensus 251 l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit~ 313 (839)
+.++ +-||.+. .+.|++|+..+++...|| ||||.-
T Consensus 304 ~~~~----------------------------~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 304 SKIF----------------------------KQAHSFAITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp EEEE----------------------------TTSSSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred EEEe----------------------------cCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 3332 1133332 578888999999999999 999974
No 53
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.69 E-value=6.3e-16 Score=172.42 Aligned_cols=270 Identities=11% Similarity=0.155 Sum_probs=181.5
Q ss_pred CEEEEcCCCC-eEEEEecCchhhhhhcccCCceEEEEcCCCC----ceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCe
Q 003205 36 NKVACAPFGG-PIAVIRDDSKIVQLYAESALRKLRIFNSAGV----LISETVWKNPGGRLIGMSWSEDQT-LICVVQDGT 109 (839)
Q Consensus 36 ~~va~sp~Gg-~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~----ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGt 109 (839)
..++++|+|. .+|+....-... ..-+.+++|+||+.... ++.++. +. +.|.++.|+|++. |++++.||+
T Consensus 16 ~~~~~sp~g~~~l~~g~~~g~~~--~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~--~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 16 ATFAWSHDKIPLLVSGTVSGTVD--ANFSTDSSLELWSLLAADSEKPIASLQ-VD--SKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp CBCCBCSSSSCEEEEBCBSSCCC--SSCCCCCCCEEEESSSGGGCSCSCCCC-CS--SCEEEEEECSSSSCEEEEESSSC
T ss_pred ceEeeCCCCCCEEEEEecCcccc--cccCCCCeEEEEEccCCCCCcEEEEEe-cC--CceEEEEECCCCCeEEEEccCCe
Confidence 4567888887 555552100000 00036899999997653 444453 55 8999999999997 678899999
Q ss_pred EEEEeCCC-----CccccCCCCCccccccCeEEEEEECC-eEEEEecCC-eEEEEecCCCce-------EEEcCCCCCCC
Q 003205 110 VYRYNIHA-----ELIEPNASMGKECFEENVVECVFWGN-GVVCVTEAN-RYFCMADFATMK-------VCELARPEVEE 175 (839)
Q Consensus 110 v~l~~~~G-----~~~~~~~g~~~~~~~~~V~~~~~~~~-G~v~~t~~~-~~~~v~~~~~~~-------~~~l~~~~~~~ 175 (839)
|++|++.. +......+| ...|..+.|+++ |..+++.+. ....+|++.... ...+.. ....
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~~ 164 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNH-----SSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ-SMSS 164 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCS-----SSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC-SCCS
T ss_pred EEEeecccccccccchhhccCC-----ccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccc-ccCC
Confidence 99998764 345556667 677999999986 777777643 244567666432 111111 0111
Q ss_pred CCceEEEeCCCCCCC-CcEEEEEEeCCeEEEEecCCcc-----ccc------CCCceEEEECCCC-cEEEEeecCC---e
Q 003205 176 LPHCVAVIEPKYTMT-GSVEVLIGTDAGILMLDEDGVQ-----KVD------DTLSQKMAVSPNG-NFVACFTHDG---R 239 (839)
Q Consensus 176 ~~~~w~vi~~~~S~~-~~~~v~~s~d~tv~l~~~~~~~-----~~~------~~~i~~ia~Spng-~~iA~~~~~g---~ 239 (839)
....+++ .|+|+ +..++..+.|++|++|+..... ..+ ..++..+++||+| .++|+++.+| +
T Consensus 165 ~~~v~~~---~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~ 241 (416)
T 2pm9_A 165 VDEVISL---AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS 241 (416)
T ss_dssp SCCCCEE---EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC
T ss_pred CCCeeEE---EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce
Confidence 1122222 45668 6788888889999999987543 222 6789999999998 6899999998 9
Q ss_pred EEEEecCCC-Ccccccc-CCCCCCCCceeee----------cCceEEEEecC-----EEEEEcCCCC--ceEeccCC-Ce
Q 003205 240 LVVNNTNFS-SPVIDES-CESALPPEQIAWC----------GMDSVLLYWND-----MLVMVAPQAE--PVQYFYDE-PL 299 (839)
Q Consensus 240 i~i~ssd~~-~~l~e~~-~~~~~~p~~~~Wc----------G~d~vv~~~~~-----~l~lig~~~~--~v~f~~~~-~~ 299 (839)
|.+|+..-. ..+..+. .+ ...+..+.|+ +.|..+..|+- ...+.++.+. .+.|.+++ ..
T Consensus 242 i~~~d~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 320 (416)
T 2pm9_A 242 ILIWDLRNANTPLQTLNQGH-QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDL 320 (416)
T ss_dssp CCEEETTSTTSCSBCCCSCC-SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTE
T ss_pred EEEEeCCCCCCCcEEeecCc-cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCE
Confidence 999987643 4455554 34 3355666665 45667777862 2345566554 78999988 68
Q ss_pred EEeecCCc-eEEEccCcceeee
Q 003205 300 VLIPECDG-VRILSNSSMEFLQ 320 (839)
Q Consensus 300 ~l~~E~DG-vRIit~~~~~~l~ 320 (839)
+++...|| ||||.........
T Consensus 321 l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 321 FACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp EEECCSSSEEEEEESCCCCCSS
T ss_pred EEEEecCCcEEEEEccCCCCCc
Confidence 88888998 9999987665433
No 54
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.69 E-value=8.6e-16 Score=171.83 Aligned_cols=210 Identities=14% Similarity=0.118 Sum_probs=154.0
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYR 112 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l 112 (839)
...++++|+|..+|+.. .+++|+||+. .|+.+.++..|. +.|.++.|+|++. |++++.||+|++
T Consensus 126 v~~v~~s~dg~~l~s~~------------~d~~i~iwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~s~d~~v~i 191 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGA------------EDRLIRIWDIENRKIVMILQGHE--QDIYSLDYFPSGDKLVSGSGDRTVRI 191 (393)
T ss_dssp EEEEEECTTSSEEEEEE------------TTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEEEEECCCCCEEEEEc------------CCCeEEEEECCCCcEEEEEccCC--CCEEEEEEcCCCCEEEEecCCCcEEE
Confidence 34789999999999986 5899999995 577888899888 9999999999986 689999999999
Q ss_pred EeCC-CCccccCCCCCccccccCeEEEEEEC-CeEEEEecCC-eEEEEecCCCce-EEEcCCCC---CCCCCceEEEeCC
Q 003205 113 YNIH-AELIEPNASMGKECFEENVVECVFWG-NGVVCVTEAN-RYFCMADFATMK-VCELARPE---VEELPHCVAVIEP 185 (839)
Q Consensus 113 ~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~~-~~~~v~~~~~~~-~~~l~~~~---~~~~~~~w~vi~~ 185 (839)
|++. |+... .+.+ ...|..+.+++ +|..+++++. ....+|+..... ...+.... .++....+++
T Consensus 192 wd~~~~~~~~-~~~~-----~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v--- 262 (393)
T 1erj_A 192 WDLRTGQCSL-TLSI-----EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV--- 262 (393)
T ss_dssp EETTTTEEEE-EEEC-----SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEE---
T ss_pred EECCCCeeEE-EEEc-----CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEE---
Confidence 9975 44322 2223 45688889988 8888777643 234566665432 33332111 1122233444
Q ss_pred CCCCCCcEEEEEEeCCeEEEEecCCcc-----------------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCC
Q 003205 186 KYTMTGSVEVLIGTDAGILMLDEDGVQ-----------------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFS 248 (839)
Q Consensus 186 ~~S~~~~~~v~~s~d~tv~l~~~~~~~-----------------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~ 248 (839)
.|+|+|+.++..+.|++|++|+..... ..|...|..+++||+|++||+++.||+|.+|+..-.
T Consensus 263 ~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~ 342 (393)
T 1erj_A 263 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342 (393)
T ss_dssp EECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 677899999999999999999976321 357788999999999999999999999999997767
Q ss_pred CccccccCCCCCCCCceeee
Q 003205 249 SPVIDESCESALPPEQIAWC 268 (839)
Q Consensus 249 ~~l~e~~~~~~~~p~~~~Wc 268 (839)
+.+..+..+ ......++|+
T Consensus 343 ~~~~~l~~h-~~~v~~v~~~ 361 (393)
T 1erj_A 343 NPLLMLQGH-RNSVISVAVA 361 (393)
T ss_dssp CEEEEEECC-SSCEEEEEEC
T ss_pred eEEEEECCC-CCCEEEEEec
Confidence 766666655 2345556654
No 55
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.68 E-value=1e-15 Score=186.73 Aligned_cols=252 Identities=9% Similarity=0.056 Sum_probs=177.1
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVY 111 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~ 111 (839)
....++++|+|..||+.. .+++|+||+ ..|+.+.++..|. +.|.++.|+|++. |++++.||+|+
T Consensus 15 ~v~~i~~sp~~~~la~~~------------~~g~v~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~ 80 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTL------------YSGRVEIWNYETQVEVRSIQVTE--TPVRAGKFIARKNWIIVGSDDFRIR 80 (814)
T ss_dssp CEEEEEECSSSSEEEEEE------------TTSEEEEEETTTTEEEEEEECCS--SCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred ceEEEEECCCCCEEEEEe------------CCCEEEEEECCCCceEEEEecCC--CcEEEEEEeCCCCEEEEEeCCCeEE
Confidence 456899999999999986 579999999 6889999999988 9999999999997 68999999999
Q ss_pred EEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCc-e-EEEcCCCCCCCCCceEEEeCCCC
Q 003205 112 RYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATM-K-VCELARPEVEELPHCVAVIEPKY 187 (839)
Q Consensus 112 l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~-~-~~~l~~~~~~~~~~~w~vi~~~~ 187 (839)
+|++ .|+......+| ...|..+.|+++|..+++++. ....+|++.+. . ...+.. +.....++ .|
T Consensus 81 vw~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~----~~~~v~~~---~~ 148 (814)
T 3mkq_A 81 VFNYNTGEKVVDFEAH-----PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG----HEHFVMCV---AF 148 (814)
T ss_dssp EEETTTCCEEEEEECC-----SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC----CSSCEEEE---EE
T ss_pred EEECCCCcEEEEEecC-----CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC----CCCcEEEE---EE
Confidence 9996 56666656667 677999999999976666543 24456666533 2 222221 22222333 56
Q ss_pred CC-CCcEEEEEEeCCeEEEEecCCcc------cccCCCceEEEECC--CCcEEEEeecCCeEEEEecCCCCccccccCCC
Q 003205 188 TM-TGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSP--NGNFVACFTHDGRLVVNNTNFSSPVIDESCES 258 (839)
Q Consensus 188 S~-~~~~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~Sp--ng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~ 258 (839)
+| +++.+++.+.|++|.+|+..+.. ..+..++..++++| +|.++++++.+|+|++|+..-.+.+.++..+
T Consensus 149 ~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~- 227 (814)
T 3mkq_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH- 227 (814)
T ss_dssp ETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC-
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC-
Confidence 77 78899999999999999986543 23448899999999 9999999999999999986544444444333
Q ss_pred CCCCCceeeecCceEEEEecCEEEEEcCCCCceEeccCCCeEEeecCCc-eEEEccCcceeeeccchhhHhhhccCCCCh
Q 003205 259 ALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIGSTSP 337 (839)
Q Consensus 259 ~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~~~~vf~igS~~p 337 (839)
...+..+. |.+++..+++...|| |++|+......+..++.+...+..+..+++
T Consensus 228 ~~~v~~~~--------------------------~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 281 (814)
T 3mkq_A 228 MSNVSFAV--------------------------FHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281 (814)
T ss_dssp SSCEEEEE--------------------------ECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTT
T ss_pred CCCEEEEE--------------------------EcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccC
Confidence 12233333 444445555555555 666665555555555555444444443433
Q ss_pred h
Q 003205 338 A 338 (839)
Q Consensus 338 g 338 (839)
|
T Consensus 282 ~ 282 (814)
T 3mkq_A 282 G 282 (814)
T ss_dssp C
T ss_pred C
Confidence 3
No 56
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.68 E-value=1.1e-15 Score=165.58 Aligned_cols=244 Identities=14% Similarity=0.185 Sum_probs=163.3
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC-CC--ceeEEEecCCCCCeEEEeecCC--C-eEEEEEeC
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GV--LISETVWKNPGGRLIGMSWSED--Q-TLICVVQD 107 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G~--ll~ti~~~~~~~~I~~~~fs~d--e-~Lv~v~~d 107 (839)
....++++|+|..||+.+ .|++|+||+.. |+ ++.++..|. +.|.++.|+|+ + .|++++.|
T Consensus 15 ~V~~v~~s~~g~~lasgs------------~D~~v~lwd~~~~~~~~~~~l~gH~--~~V~~v~~~~~~~~~~l~s~s~D 80 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCS------------SDRSVKIFDVRNGGQILIADLRGHE--GPVWQVAWAHPMYGNILASCSYD 80 (316)
T ss_dssp CEEEEEECGGGCEEEEEE------------TTTEEEEEEEETTEEEEEEEEECCS--SCEEEEEECCGGGSSCEEEEETT
T ss_pred eEEEeeEcCCCCEEEEEe------------CCCeEEEEEecCCCcEEEEEEcCCC--ccEEEEEeCCCCCCCEEEEEECC
Confidence 456899999999999987 68999999964 43 578899998 99999999863 4 47899999
Q ss_pred CeEEEEeCC-CCc--cccCCCCCccccccCeEEEEEECC--eEEEEecCCe-EEEEecCCCce-EEEcCCCCCCCCCceE
Q 003205 108 GTVYRYNIH-AEL--IEPNASMGKECFEENVVECVFWGN--GVVCVTEANR-YFCMADFATMK-VCELARPEVEELPHCV 180 (839)
Q Consensus 108 Gtv~l~~~~-G~~--~~~~~g~~~~~~~~~V~~~~~~~~--G~v~~t~~~~-~~~v~~~~~~~-~~~l~~~~~~~~~~~w 180 (839)
|+|++|++. |+. .....+| ...|..+.|+++ |..+++++.+ ...+++..... ...... ..++...+
T Consensus 81 ~~v~iWd~~~~~~~~~~~~~~h-----~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~-~~~h~~~v- 153 (316)
T 3bg1_A 81 RKVIIWREENGTWEKSHEHAGH-----DSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKI-NNAHTIGC- 153 (316)
T ss_dssp SCEEEECCSSSCCCEEEEECCC-----SSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCB-TTSSSSCB-
T ss_pred CEEEEEECCCCcceEEEEccCC-----CCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeee-eccccCCc-
Confidence 999999875 432 3334567 667899999986 8777776432 33445444321 111111 00011111
Q ss_pred EEeCCCCCCC-----------------CcEEEEEEeCCeEEEEecCCc----c----cccCCCceEEEECCCC----cEE
Q 003205 181 AVIEPKYTMT-----------------GSVEVLIGTDAGILMLDEDGV----Q----KVDDTLSQKMAVSPNG----NFV 231 (839)
Q Consensus 181 ~vi~~~~S~~-----------------~~~~v~~s~d~tv~l~~~~~~----~----~~~~~~i~~ia~Spng----~~i 231 (839)
....|+|+ +..++..+.|++|++|+..+. . ..|.++|..++|||+| ++|
T Consensus 154 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~l 231 (316)
T 3bg1_A 154 --NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTI 231 (316)
T ss_dssp --CCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEE
T ss_pred --ceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceE
Confidence 11122333 467888888999999998632 1 4688899999999997 899
Q ss_pred EEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCC--ceEeccCCCeEEeecCCc-e
Q 003205 232 ACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAE--PVQYFYDEPLVLIPECDG-V 308 (839)
Q Consensus 232 A~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~--~v~f~~~~~~~l~~E~DG-v 308 (839)
|+++.||+|+||+.+-... . . |+.. .+-++.+. .+.|.+++..+++...|| |
T Consensus 232 as~s~D~~v~iw~~~~~~~------~---~-----~~~~-----------~~~~~~~~v~~v~~sp~g~~las~~~D~~v 286 (316)
T 3bg1_A 232 ASCSQDGRVFIWTCDDASS------N---T-----WSPK-----------LLHKFNDVVWHVSWSITANILAVSGGDNKV 286 (316)
T ss_dssp EEEETTCEEEEEECSSTTC------C---C-----CBCC-----------EEEECSSCEEEEEECTTTCCEEEEESSSCE
T ss_pred EEEcCCCeEEEEEccCccc------c---c-----hhhh-----------hhhcCCCcEEEEEEcCCCCEEEEEcCCCeE
Confidence 9999999999997541100 0 0 1000 01122222 577888888899999998 9
Q ss_pred EEEccC---cceeeeccchh
Q 003205 309 RILSNS---SMEFLQRVPAS 325 (839)
Q Consensus 309 RIit~~---~~~~l~~Vp~~ 325 (839)
|||..+ ....++.+++.
T Consensus 287 ~lw~~~~~g~~~~~~~~~~~ 306 (316)
T 3bg1_A 287 TLWKESVDGQWVCISDVNKG 306 (316)
T ss_dssp EEEEECTTSCEEEEEECC--
T ss_pred EEEEECCCCcEEEeeeccCC
Confidence 999865 22445555543
No 57
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.68 E-value=2e-14 Score=161.95 Aligned_cols=256 Identities=14% Similarity=0.167 Sum_probs=180.6
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCe
Q 003205 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGT 109 (839)
Q Consensus 32 ~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGt 109 (839)
|+.-..++.|+. +.||+.. +++|+|||. +|+.+..+..+...+.|.+++|+|||. |++++.||+
T Consensus 105 d~y~~~l~wS~~-n~lAvgl-------------d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~ 170 (420)
T 4gga_A 105 DYYLNLVDWSSG-NVLAVAL-------------DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE 170 (420)
T ss_dssp CTTCBCEEECTT-SEEEEEE-------------TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred cccceeEEECCC-CEEEEEe-------------CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCe
Confidence 444457888874 6888874 689999994 788888888765336799999999997 589999999
Q ss_pred EEEEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEec--CCeEEEEecCCC--ceEEEcCCCCCCCCCceEEEeC
Q 003205 110 VYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTE--ANRYFCMADFAT--MKVCELARPEVEELPHCVAVIE 184 (839)
Q Consensus 110 v~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~--~~~~~~v~~~~~--~~~~~l~~~~~~~~~~~w~vi~ 184 (839)
|++|++ .|+......+| ...|..+... |..++++ ++.++. ++... .....+.. +......+
T Consensus 171 v~iWd~~~~~~~~~~~~h-----~~~v~~~s~~--~~~l~sgs~d~~i~~-~d~~~~~~~~~~~~~----h~~~~~~~-- 236 (420)
T 4gga_A 171 VQLWDVQQQKRLRNMTSH-----SARVGSLSWN--SYILSSGSRSGHIHH-HDVRVAEHHVATLSG----HSQEVCGL-- 236 (420)
T ss_dssp EEEEETTTTEEEEEECCC-----SSCEEEEEEE--TTEEEEEETTSEEEE-EETTSSSCEEEEEEC----CSSCEEEE--
T ss_pred EEEEEcCCCcEEEEEeCC-----CCceEEEeeC--CCEEEEEeCCCceeE-eeecccceeeEEecc----cccceeee--
Confidence 999986 56666667778 5567655544 4444444 444543 43332 22233321 22222222
Q ss_pred CCCCCCCcEEEEEEeCCeEEEEecCCcc---------cccCCCceEEEECCCCc-EEEEe--ecCCeEEEEecCCCCccc
Q 003205 185 PKYTMTGSVEVLIGTDAGILMLDEDGVQ---------KVDDTLSQKMAVSPNGN-FVACF--THDGRLVVNNTNFSSPVI 252 (839)
Q Consensus 185 ~~~S~~~~~~v~~s~d~tv~l~~~~~~~---------~~~~~~i~~ia~Spng~-~iA~~--~~~g~i~i~ssd~~~~l~ 252 (839)
.++|+|..++..+.|+.+++|+..... ..+.++|..++++|++. .+|++ +.||+|++|+..-.+.+.
T Consensus 237 -~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 237 -RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp -EECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE
T ss_pred -eecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce
Confidence 355699999999999999999876432 45778899999999775 55554 478999999987666666
Q ss_pred cccCCCCCCCCceeee----------c-CceEEEEecC-----EEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEcc
Q 003205 253 DESCESALPPEQIAWC----------G-MDSVLLYWND-----MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSN 313 (839)
Q Consensus 253 e~~~~~~~~p~~~~Wc----------G-~d~vv~~~~~-----~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit~ 313 (839)
.+..+. .+..+.|+ | .|..+..|+- ...|.||.+. .+.|.+|+..+++...|| ||||.-
T Consensus 316 ~~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 316 AVDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp EEECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred eecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 555543 45666676 2 4566667752 3457788776 788999999999999999 999986
Q ss_pred Cccee
Q 003205 314 SSMEF 318 (839)
Q Consensus 314 ~~~~~ 318 (839)
...+-
T Consensus 394 ~~~~~ 398 (420)
T 4gga_A 394 FELDP 398 (420)
T ss_dssp SCSSC
T ss_pred CCCCc
Confidence 54443
No 58
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.67 E-value=9.8e-15 Score=159.84 Aligned_cols=188 Identities=13% Similarity=0.058 Sum_probs=139.2
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVY 111 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~ 111 (839)
....++++|+|..+|+.+ .|++|+||+. .|+.+.++..|. +.|.++.|+|++. |++++.||+|+
T Consensus 78 ~V~~~~~~~~~~~l~s~s------------~D~~v~lwd~~~~~~~~~~~~h~--~~v~~v~~sp~~~~l~s~~~d~~i~ 143 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSS------------WDKTLRLWDLRTGTTYKRFVGHQ--SEVYSVAFSPDNRQILSAGAEREIK 143 (343)
T ss_dssp CEEEEEECSSTTEEEEEE------------TTSEEEEEETTSSCEEEEEECCC--SCEEEEEECSSTTEEEEEETTSCEE
T ss_pred ceEEEEECCCCCEEEEEc------------CCCcEEEEECCCCcEEEEEcCCC--CcEEEEEECCCCCEEEEEcCCCEEE
Confidence 445789999999999886 5899999995 789999999998 9999999999986 68999999999
Q ss_pred EEeCCCCccccCC---CCCccccccCeEEEEEECCe----------EEEEec--CCeEEEEecCCCceEEEcCCCCCCCC
Q 003205 112 RYNIHAELIEPNA---SMGKECFEENVVECVFWGNG----------VVCVTE--ANRYFCMADFATMKVCELARPEVEEL 176 (839)
Q Consensus 112 l~~~~G~~~~~~~---g~~~~~~~~~V~~~~~~~~G----------~v~~t~--~~~~~~v~~~~~~~~~~l~~~~~~~~ 176 (839)
+|++.|+...... +| ...|..+.++++| ..+++. ++.+ .+|+........+.. +.
T Consensus 144 ~wd~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i-~iwd~~~~~~~~~~~----h~ 213 (343)
T 2xzm_R 144 LWNILGECKFSSAEKENH-----SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRL-KVWNTNFQIRYTFKA----HE 213 (343)
T ss_dssp EEESSSCEEEECCTTTSC-----SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEE-EEEETTTEEEEEEEC----CS
T ss_pred EEeccCCceeeeecccCC-----CceeeeeeeccccccccccCCCCCEEEEEcCCCEE-EEEcCCCceeEEEcC----cc
Confidence 9998776532222 45 5678889998876 344443 4444 455544333333321 22
Q ss_pred CceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCc-c----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCC
Q 003205 177 PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGV-Q----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSS 249 (839)
Q Consensus 177 ~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~-~----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~ 249 (839)
....++ .|||+|+.++..+.|++|++||.... . ..+..+|..++|||+|+++|.. .++.+.+|+..-.+
T Consensus 214 ~~v~~~---~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 214 SNVNHL---SISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQS 287 (343)
T ss_dssp SCEEEE---EECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCC
T ss_pred ccceEE---EECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCC
Confidence 233333 57779999999999999999998432 2 2355679999999999998865 57789999865333
No 59
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.5e-15 Score=169.40 Aligned_cols=258 Identities=9% Similarity=0.064 Sum_probs=180.4
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC-----CceeEEEecCCCCCeEEEeecCC-Ce-EEEEEe
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-----VLISETVWKNPGGRLIGMSWSED-QT-LICVVQ 106 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G-----~ll~ti~~~~~~~~I~~~~fs~d-e~-Lv~v~~ 106 (839)
....++++|+|..+|+.. .++.|++|+... +.+.++..|. +.|.++.|+|+ +. |++++.
T Consensus 69 ~v~~~~~s~~~~~l~~~~------------~dg~v~vw~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~s~~~ 134 (416)
T 2pm9_A 69 KFNDLDWSHNNKIIAGAL------------DNGSLELYSTNEANNAINSMARFSNHS--SSVKTVKFNAKQDNVLASGGN 134 (416)
T ss_dssp CEEEEEECSSSSCEEEEE------------SSSCEEEECCSSTTSCCCEEEECCCSS--SCCCEEEECSSSTTBEEEECS
T ss_pred ceEEEEECCCCCeEEEEc------------cCCeEEEeecccccccccchhhccCCc--cceEEEEEcCCCCCEEEEEcC
Confidence 456899999999999986 579999999876 5888888888 99999999998 55 689999
Q ss_pred CCeEEEEeCCCCc------cc----cCCCCCccccccCeEEEEEECC-eEEEEecCC-eEEEEecCCCceE-EEcCCCCC
Q 003205 107 DGTVYRYNIHAEL------IE----PNASMGKECFEENVVECVFWGN-GVVCVTEAN-RYFCMADFATMKV-CELARPEV 173 (839)
Q Consensus 107 dGtv~l~~~~G~~------~~----~~~g~~~~~~~~~V~~~~~~~~-G~v~~t~~~-~~~~v~~~~~~~~-~~l~~~~~ 173 (839)
||+|++|++.... .. ...+| ...|..+.++++ |..+++.+. ....++++..... ..+.....
T Consensus 135 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 209 (416)
T 2pm9_A 135 NGEIFIWDMNKCTESPSNYTPLTPGQSMSS-----VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSP 209 (416)
T ss_dssp SSCEEBCBTTTTSSCTTTCCCBCCCCSCCS-----SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCC
T ss_pred CCeEEEEECCCCccccccccccccccccCC-----CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccc
Confidence 9999999875332 11 12344 567889999987 666666433 2345666664433 23322110
Q ss_pred --CCCCceEEEeCCCCCCCC-cEEEEEEeCC---eEEEEecCCc-c-----c-ccCCCceEEEECC-CCcEEEEeecCCe
Q 003205 174 --EELPHCVAVIEPKYTMTG-SVEVLIGTDA---GILMLDEDGV-Q-----K-VDDTLSQKMAVSP-NGNFVACFTHDGR 239 (839)
Q Consensus 174 --~~~~~~w~vi~~~~S~~~-~~~v~~s~d~---tv~l~~~~~~-~-----~-~~~~~i~~ia~Sp-ng~~iA~~~~~g~ 239 (839)
+......++ .|+|++ ..++..+.|+ +|++|+.... . . .+..++..+++|| +|+++|+++.||+
T Consensus 210 ~~~~~~~v~~~---~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~ 286 (416)
T 2pm9_A 210 NSGIKQQLSVV---EWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT 286 (416)
T ss_dssp SSCCCCCEEEE---EECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE
T ss_pred ccccCCceEEE---EECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC
Confidence 002222223 566787 5777777787 9999998753 2 3 6788999999999 9999999999999
Q ss_pred EEEEecCCCCccccccCCCCCCCCceeee----------cCceEEEEecCE-------------------EEEEcC----
Q 003205 240 LVVNNTNFSSPVIDESCESALPPEQIAWC----------GMDSVLLYWNDM-------------------LVMVAP---- 286 (839)
Q Consensus 240 i~i~ssd~~~~l~e~~~~~~~~p~~~~Wc----------G~d~vv~~~~~~-------------------l~lig~---- 286 (839)
|.+|+..-.+.+.++..+ ...+..+.|+ +.|..+..|+-. ..+..+
T Consensus 287 v~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (416)
T 2pm9_A 287 VLLWNPESAEQLSQFPAR-GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSRE 365 (416)
T ss_dssp EEEECSSSCCEEEEEECS-SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC---------------------
T ss_pred EEEeeCCCCccceeecCC-CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccc
Confidence 999997767777666655 3355666666 445556666420 001111
Q ss_pred ----------------CC---CceEeccCCCeEEeecCCc-eEEEccC
Q 003205 287 ----------------QA---EPVQYFYDEPLVLIPECDG-VRILSNS 314 (839)
Q Consensus 287 ----------------~~---~~v~f~~~~~~~l~~E~DG-vRIit~~ 314 (839)
.. ..+.|.+|+..+++..-|| |+||..+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 366 ESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp -CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred ccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence 01 1578888999998998998 9998765
No 60
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.67 E-value=2.6e-14 Score=159.96 Aligned_cols=242 Identities=14% Similarity=0.159 Sum_probs=169.9
Q ss_pred CCceEEEEcC-CCCceeEEEe-cCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeCC-CCccccCCCCCccccccCeEEEE
Q 003205 64 ALRKLRIFNS-AGVLISETVW-KNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECV 139 (839)
Q Consensus 64 ~~~~I~iy~~-~G~ll~ti~~-~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~ 139 (839)
.++.|++|+. .|+....+.. |. +.|.++.|+|++. |++++.||+|++|++. |+......+| ...|..+.
T Consensus 111 ~d~~v~lw~~~~~~~~~~~~~~~~--~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~~~ 183 (401)
T 4aez_A 111 LERNVYVWNADSGSVSALAETDES--TYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGH-----QARVGCLS 183 (401)
T ss_dssp ETTEEEEEETTTCCEEEEEECCTT--CCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-----SSCEEEEE
T ss_pred CCCeEEEeeCCCCcEeEeeecCCC--CCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCC-----CCceEEEE
Confidence 4799999996 5677777776 34 8899999999987 5788999999999964 5665556677 67788888
Q ss_pred EECCeEEEEecCCeEEEEecCCC--ceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----
Q 003205 140 FWGNGVVCVTEANRYFCMADFAT--MKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----- 212 (839)
Q Consensus 140 ~~~~G~v~~t~~~~~~~v~~~~~--~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----- 212 (839)
+.++-++..+.++.+. ++++.. .....+.. +.....++ .|+|+|..++..+.|++|++||.....
T Consensus 184 ~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~----~~~~v~~~---~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 255 (401)
T 4aez_A 184 WNRHVLSSGSRSGAIH-HHDVRIANHQIGTLQG----HSSEVCGL---AWRSDGLQLASGGNDNVVQIWDARSSIPKFTK 255 (401)
T ss_dssp EETTEEEEEETTSEEE-EEETTSSSCEEEEEEC----CSSCEEEE---EECTTSSEEEEEETTSCEEEEETTCSSEEEEE
T ss_pred ECCCEEEEEcCCCCEE-EEecccCcceeeEEcC----CCCCeeEE---EEcCCCCEEEEEeCCCeEEEccCCCCCccEEe
Confidence 7656555555555554 555542 22333321 22222333 566799999999999999999988643
Q ss_pred cccCCCceEEEECCCCc-EEEEee--cCCeEEEEecCCCCccccccCCCCCCCCceeee----------c-CceEEEEec
Q 003205 213 KVDDTLSQKMAVSPNGN-FVACFT--HDGRLVVNNTNFSSPVIDESCESALPPEQIAWC----------G-MDSVLLYWN 278 (839)
Q Consensus 213 ~~~~~~i~~ia~Spng~-~iA~~~--~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~Wc----------G-~d~vv~~~~ 278 (839)
..+..+|..+++||+|. ++|+++ .||+|.+|+..-.+.+..+..+ ..+..+.|+ | +|..+..|+
T Consensus 256 ~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~ 333 (401)
T 4aez_A 256 TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG--SQVTSLIWSPHSKEIMSTHGFPDNNLSIWS 333 (401)
T ss_dssp CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS--SCEEEEEECSSSSEEEEEECTTTCEEEEEE
T ss_pred cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC--CcEEEEEECCCCCeEEEEeecCCCcEEEEe
Confidence 46788999999999875 566654 6999999998767777666543 356667775 3 566666665
Q ss_pred C-------EEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEccCcceeeecc
Q 003205 279 D-------MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRV 322 (839)
Q Consensus 279 ~-------~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~V 322 (839)
- ...+.|+.+. .+.|.+++..+++...|| |+||.-...+.+.+.
T Consensus 334 ~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 334 YSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred cCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 2 1235566654 688999999999999999 999999877766553
No 61
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.67 E-value=1e-14 Score=156.82 Aligned_cols=266 Identities=11% Similarity=0.115 Sum_probs=169.6
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC-----CceeEEEecCCCCCeEEEeecC--CCe-EEEEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-----VLISETVWKNPGGRLIGMSWSE--DQT-LICVV 105 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G-----~ll~ti~~~~~~~~I~~~~fs~--de~-Lv~v~ 105 (839)
....++++|+|..+|+.. .+++|+||+... +++.++..|. +.|.++.|+| |+. |++++
T Consensus 13 ~v~~~~~~~~~~~l~~~~------------~dg~i~iw~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~d~~~l~s~~ 78 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCS------------SDQHIKVFKLDKDTSNWELSDSWRAHD--SSIVAIDWASPEYGRIIASAS 78 (351)
T ss_dssp CEEEEEECSSSSEEEEEE------------TTSEEEEEEECSSSCCEEEEEEEECCS--SCEEEEEECCGGGCSEEEEEE
T ss_pred ceeEEEEcCCCCEEEEee------------CCCeEEEEECCCCCCcceecceeccCC--CcEEEEEEcCCCCCCEEEEEc
Confidence 456899999999999986 589999999764 3677788888 9999999999 455 68999
Q ss_pred eCCeEEEEeCCCC----------ccccCCCCCccccccCeEEEEEECC--eEEEEecCC-eEEEEecCCCceE-------
Q 003205 106 QDGTVYRYNIHAE----------LIEPNASMGKECFEENVVECVFWGN--GVVCVTEAN-RYFCMADFATMKV------- 165 (839)
Q Consensus 106 ~dGtv~l~~~~G~----------~~~~~~g~~~~~~~~~V~~~~~~~~--G~v~~t~~~-~~~~v~~~~~~~~------- 165 (839)
.||+|++|++... ......+| ...|..+.+.++ |..+++.+. ....+|++..+..
T Consensus 79 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 153 (351)
T 3f3f_A 79 YDKTVKLWEEDPDQEECSGRRWNKLCTLNDS-----KGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT 153 (351)
T ss_dssp TTSCEEEEEECTTSCTTSSCSEEEEEEECCC-----SSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE
T ss_pred CCCeEEEEecCCCcccccccCcceeeeeccc-----CCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc
Confidence 9999999987542 23334456 667999999987 877766533 3344555543211
Q ss_pred ---EEcCCCCCCCCCceEEEeCCCCCCC---CcEEEEEEeCCeEEEEecCCcc-------cccCCCceEEEECCCC----
Q 003205 166 ---CELARPEVEELPHCVAVIEPKYTMT---GSVEVLIGTDAGILMLDEDGVQ-------KVDDTLSQKMAVSPNG---- 228 (839)
Q Consensus 166 ---~~l~~~~~~~~~~~w~vi~~~~S~~---~~~~v~~s~d~tv~l~~~~~~~-------~~~~~~i~~ia~Spng---- 228 (839)
..+...+........++ .|+|+ +..++..+.++.+..|+..... ..+.++|..+++||+|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~ 230 (351)
T 3f3f_A 154 SEMKVLSIPPANHLQSDFCL---SWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWY 230 (351)
T ss_dssp EEEESCSCCCSSCSCCCEEE---EECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSS
T ss_pred ccccccccccCCcccceeEE---EeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcc
Confidence 00110011111222222 33444 7888888889988777655432 4678899999999999
Q ss_pred cEEEEeecCCeEEEEecCCCCccccccCCCCCCC------Cceeeec-------CceEEEEecC-----EEEEEcCCCC-
Q 003205 229 NFVACFTHDGRLVVNNTNFSSPVIDESCESALPP------EQIAWCG-------MDSVLLYWND-----MLVMVAPQAE- 289 (839)
Q Consensus 229 ~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p------~~~~WcG-------~d~vv~~~~~-----~l~lig~~~~- 289 (839)
+++|+++.||+|.+|+............. .... ......+ ....+..|+. ...+.|+.+.
T Consensus 231 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 309 (351)
T 3f3f_A 231 QLIATGCKDGRIRIFKITEKLSPLASEES-LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEV 309 (351)
T ss_dssp EEEEEEETTSCEEEEEEEECC----------------------------------------CCSEEEEEEEEECTTSSCE
T ss_pred eEEEEEcCCCeEEEEeCCCCcCccccCCc-ccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccE
Confidence 89999999999999986532221111100 0000 0111110 1111112221 2234556554
Q ss_pred -ceEeccCCCeEEeecCCc-eEEEccCcceeeecc
Q 003205 290 -PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRV 322 (839)
Q Consensus 290 -~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~V 322 (839)
.+.|.+++..+++...|| ||||..+....++.+
T Consensus 310 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 310 WSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 788999999999999999 999998866555544
No 62
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.66 E-value=1.7e-15 Score=166.38 Aligned_cols=253 Identities=11% Similarity=0.124 Sum_probs=172.7
Q ss_pred CceeEEEecCCCC-CeEEEeecCCCe-EEEEEeCCeEEEEeCCCC-c---cccCCCCCccccccCeEEEEEECCeEEEEe
Q 003205 76 VLISETVWKNPGG-RLIGMSWSEDQT-LICVVQDGTVYRYNIHAE-L---IEPNASMGKECFEENVVECVFWGNGVVCVT 149 (839)
Q Consensus 76 ~ll~ti~~~~~~~-~I~~~~fs~de~-Lv~v~~dGtv~l~~~~G~-~---~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t 149 (839)
+++.+++.|. + .|..++|+|+++ |++++.||+|++|++.+. . .....+| ...|..+.|+++|..+++
T Consensus 6 ~~~~~~~~h~--~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h-----~~~v~~~~~sp~g~~l~s 78 (345)
T 3fm0_A 6 VLLGRVPAHP--DSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGH-----QRTVRKVAWSPCGNYLAS 78 (345)
T ss_dssp EEEEEECCST--TSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSC-----SSCEEEEEECTTSSEEEE
T ss_pred EEeeeecCCC--CCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeecccc-----CCcEEEEEECCCCCEEEE
Confidence 5678888887 5 899999999998 689999999999987654 2 2234577 678999999999988888
Q ss_pred cCCe-EEEEecCCCce---EEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc--------cccCC
Q 003205 150 EANR-YFCMADFATMK---VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--------KVDDT 217 (839)
Q Consensus 150 ~~~~-~~~v~~~~~~~---~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~--------~~~~~ 217 (839)
++.+ ...+|+..... ...+.. +....+++ .|||+|+.++..+.|++|++|+..... ..+..
T Consensus 79 ~s~D~~v~iw~~~~~~~~~~~~~~~----h~~~v~~v---~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~ 151 (345)
T 3fm0_A 79 ASFDATTCIWKKNQDDFECVTTLEG----HENEVKSV---AWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ 151 (345)
T ss_dssp EETTSCEEEEEECCC-EEEEEEECC----CSSCEEEE---EECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS
T ss_pred EECCCcEEEEEccCCCeEEEEEccC----CCCCceEE---EEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC
Confidence 6542 33455544332 222321 22333444 577799999999999999999976431 46788
Q ss_pred CceEEEECCCCcEEEEeecCCeEEEEecCCCCcc--ccccCCCCCCCCceeee---------cCceEEEEecCE------
Q 003205 218 LSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPV--IDESCESALPPEQIAWC---------GMDSVLLYWNDM------ 280 (839)
Q Consensus 218 ~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l--~e~~~~~~~~p~~~~Wc---------G~d~vv~~~~~~------ 280 (839)
+|..+++||+|++||+++.||+|.+|+..-.+.. ..+..+ ...+..++|. +.|..+..|+..
T Consensus 152 ~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h-~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~ 230 (345)
T 3fm0_A 152 DVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH-ESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQ 230 (345)
T ss_dssp CEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTT
T ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC-CCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCc
Confidence 8999999999999999999999999986533322 233334 2345556664 667777777520
Q ss_pred --------------EEEEcCCCC---ceEeccCCCeEEeecCCc-eEEEccCcce--------e-eeccchhhHhhhccC
Q 003205 281 --------------LVMVAPQAE---PVQYFYDEPLVLIPECDG-VRILSNSSME--------F-LQRVPASTEQIFAIG 333 (839)
Q Consensus 281 --------------l~lig~~~~---~v~f~~~~~~~l~~E~DG-vRIit~~~~~--------~-l~~Vp~~~~~vf~ig 333 (839)
..+.|.... .+.|.+++..+++...|| ||||..+... + .+....|...|..+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 310 (345)
T 3fm0_A 231 GVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVA 310 (345)
T ss_dssp CCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEE
T ss_pred cceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeE
Confidence 123332222 577888888888888898 9999765321 1 122245666677776
Q ss_pred CCChhh-hHHH
Q 003205 334 STSPAA-LLYD 343 (839)
Q Consensus 334 S~~pga-~L~~ 343 (839)
.++.+. +|+.
T Consensus 311 ~~p~~~~~laS 321 (345)
T 3fm0_A 311 WNPKEPGLLAS 321 (345)
T ss_dssp ECSSSTTEEEE
T ss_pred EeCCCceEEEE
Confidence 665543 4443
No 63
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.66 E-value=3.8e-15 Score=161.41 Aligned_cols=261 Identities=8% Similarity=0.075 Sum_probs=180.3
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCc----eeEEEecCCCCCeEEEeecCCCe--EEEEEeC
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVL----ISETVWKNPGGRLIGMSWSEDQT--LICVVQD 107 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~l----l~ti~~~~~~~~I~~~~fs~de~--Lv~v~~d 107 (839)
....++++|+|..+|+.. .++.|+||+..+.. +..+..|. +.|.++.|+|++. |++++.|
T Consensus 13 ~v~~~~~s~~~~~l~~~~------------~d~~v~iw~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~d 78 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITS------------WDGSLTVYKFDIQAKNVDLLQSLRYK--HPLLCCNFIDNTDLQIYVGTVQ 78 (342)
T ss_dssp CEEEEEEEGGGTEEEEEE------------TTSEEEEEEEETTTTEEEEEEEEECS--SCEEEEEEEESSSEEEEEEETT
T ss_pred cEEEEEEcCCCCEEEEEc------------CCCeEEEEEeCCCCccccceeeeecC--CceEEEEECCCCCcEEEEEcCC
Confidence 456899999999999986 58999999975544 66677777 8999999999988 6799999
Q ss_pred CeEEEEeC-CCCccccCCC--CCccccccCeEEEEEECCeEEEEecC-CeEEEEecCCCc---e----EEEcCCCCCCCC
Q 003205 108 GTVYRYNI-HAELIEPNAS--MGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATM---K----VCELARPEVEEL 176 (839)
Q Consensus 108 Gtv~l~~~-~G~~~~~~~g--~~~~~~~~~V~~~~~~~~G~v~~t~~-~~~~~v~~~~~~---~----~~~l~~~~~~~~ 176 (839)
|+|++|++ .+.......+ | ...|..+.+.+ |-.+++.+ .....+|++... . ...+.. +...
T Consensus 79 g~i~~wd~~~~~~~~~~~~~~~-----~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~ 150 (342)
T 1yfq_A 79 GEILKVDLIGSPSFQALTNNEA-----NLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN--TKVK 150 (342)
T ss_dssp SCEEEECSSSSSSEEECBSCCC-----CSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS--SSSC
T ss_pred CeEEEEEeccCCceEeccccCC-----CCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE--EeeC
Confidence 99999998 7655455555 6 67899999998 55555543 234456654320 0 111221 1112
Q ss_pred CceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCC-cc-------cccCCCceEEEECC-CCcEEEEeecCCeEEEEecCC
Q 003205 177 PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDG-VQ-------KVDDTLSQKMAVSP-NGNFVACFTHDGRLVVNNTNF 247 (839)
Q Consensus 177 ~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~-~~-------~~~~~~i~~ia~Sp-ng~~iA~~~~~g~i~i~ssd~ 247 (839)
...+++ .+++++ ++..+.+++|++|+... .. ..+..++..++++| +|+.+|+++.+|++.+|+-+.
T Consensus 151 ~~v~~~---~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~ 225 (342)
T 1yfq_A 151 NKIFTM---DTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp CCEEEE---EECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred CceEEE---EecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcC
Confidence 222333 344465 77778899999999886 22 35677899999999 999999999999999998664
Q ss_pred C------CccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEccCccee
Q 003205 248 S------SPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSNSSMEF 318 (839)
Q Consensus 248 ~------~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit~~~~~~ 318 (839)
. +....+..+... +. | .++.+. .+.|.+++..+++...|| |+||.....+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~-~~-----~--------------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 226 QGDDYNSSKRFAFRCHRLN-LK-----D--------------TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285 (342)
T ss_dssp TCCSTTCTTCEEEECCCCC-TT-----C--------------CSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred CCcccccccceeeeccccc-cc-----c--------------cccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhH
Confidence 4 333333333110 00 0 011111 466677777788888888 99999988888
Q ss_pred eeccchh-hHhhhccCCCChhhhHHH
Q 003205 319 LQRVPAS-TEQIFAIGSTSPAALLYD 343 (839)
Q Consensus 319 l~~Vp~~-~~~vf~igS~~pga~L~~ 343 (839)
+..++.+ ...|..+. +.+.+|+.
T Consensus 286 ~~~~~~~h~~~v~~~~--~~~~~l~s 309 (342)
T 1yfq_A 286 IKNFAKFNEDSVVKIA--CSDNILCL 309 (342)
T ss_dssp EEECCCCSSSEEEEEE--ECSSEEEE
T ss_pred hhhhhcccCCCceEec--CCCCeEEE
Confidence 8888887 77777665 44545443
No 64
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=9.8e-15 Score=159.92 Aligned_cols=234 Identities=13% Similarity=0.156 Sum_probs=161.2
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC---CCCceeEEEecCCCCCeEEEeecCC--Ce-EEEEEeC
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS---AGVLISETVWKNPGGRLIGMSWSED--QT-LICVVQD 107 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~---~G~ll~ti~~~~~~~~I~~~~fs~d--e~-Lv~v~~d 107 (839)
....++++|+|..+|+.. .+++|+||+. .++++.++..|. +.|.++.|+++ +. |++++.|
T Consensus 13 ~v~~~~~s~~~~~l~~~~------------~dg~i~iw~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~~~d 78 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCS------------SDKTIKIFEVEGETHKLIDTLTGHE--GPVWRVDWAHPKFGTILASCSYD 78 (379)
T ss_dssp CEEEEEECSSSSEEEEEE------------TTSCEEEEEEETTEEEEEEEECCCS--SCEEEEEECCGGGCSEEEEEETT
T ss_pred cEEEEEEcCCCCEEEEEE------------CCCcEEEEecCCCcceeeeEecCCC--CcEEEEEeCCCCCCCEEEEeccC
Confidence 456889999999999986 5899999997 456778888888 99999999976 55 6899999
Q ss_pred CeEEEEeCC-CC--ccccCCCCCccccccCeEEEEEECC--eEEEEecCC-eEEEEecCCCc---eEEEcCCCCCCCCCc
Q 003205 108 GTVYRYNIH-AE--LIEPNASMGKECFEENVVECVFWGN--GVVCVTEAN-RYFCMADFATM---KVCELARPEVEELPH 178 (839)
Q Consensus 108 Gtv~l~~~~-G~--~~~~~~g~~~~~~~~~V~~~~~~~~--G~v~~t~~~-~~~~v~~~~~~---~~~~l~~~~~~~~~~ 178 (839)
|+|++|++. |+ ......+| ...|..+.+.++ |..+++.+. ....++++... ....+.. ....
T Consensus 79 g~v~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~----~~~~ 149 (379)
T 3jrp_A 79 GKVLIWKEENGRWSQIAVHAVH-----SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA----HAIG 149 (379)
T ss_dssp SCEEEEEEETTEEEEEEEECCC-----SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC----CTTC
T ss_pred CEEEEEEcCCCceeEeeeecCC-----CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC----CCCc
Confidence 999999864 44 34445556 667999999987 766666432 23445555432 2222221 1222
Q ss_pred eEEEeCCCCCC-------------CCcEEEEEEeCCeEEEEecCCcc---------cccCCCceEEEECCC---CcEEEE
Q 003205 179 CVAVIEPKYTM-------------TGSVEVLIGTDAGILMLDEDGVQ---------KVDDTLSQKMAVSPN---GNFVAC 233 (839)
Q Consensus 179 ~w~vi~~~~S~-------------~~~~~v~~s~d~tv~l~~~~~~~---------~~~~~~i~~ia~Spn---g~~iA~ 233 (839)
..++ .|+| ++..++..+.|++|++|+..... ..+.++|..+++||+ |+++|+
T Consensus 150 v~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s 226 (379)
T 3jrp_A 150 VNSA---SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 226 (379)
T ss_dssp EEEE---EECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred eEEE---EEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEE
Confidence 2222 3444 68899999999999999876321 457889999999999 899999
Q ss_pred eecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCCceEeccCCCeEEeecCCc-eEEEc
Q 003205 234 FTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDG-VRILS 312 (839)
Q Consensus 234 ~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~~~l~~E~DG-vRIit 312 (839)
++.||+|.+|+.+-.+.......... .+....+ ..+.|.+++..+++...|| |+||.
T Consensus 227 ~~~dg~i~iwd~~~~~~~~~~~~~~~--------~~~~~~v--------------~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 227 VSQDRTCIIWTQDNEQGPWKKTLLKE--------EKFPDVL--------------WRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp EETTSCEEEEEESSTTSCCEEEESSS--------SCCSSCE--------------EEEEECSSSCCEEEEESSSSEEEEE
T ss_pred EeCCCEEEEEeCCCCCccceeeeecc--------ccCCCcE--------------EEEEEcCCCCEEEEecCCCcEEEEe
Confidence 99999999998653221100000000 0000000 1456667777777777788 99998
Q ss_pred cCc
Q 003205 313 NSS 315 (839)
Q Consensus 313 ~~~ 315 (839)
.+.
T Consensus 285 ~~~ 287 (379)
T 3jrp_A 285 ENL 287 (379)
T ss_dssp EEE
T ss_pred CCC
Confidence 763
No 65
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.64 E-value=4.4e-15 Score=164.05 Aligned_cols=208 Identities=12% Similarity=0.052 Sum_probs=140.7
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeE--EE--ecCCCCCeEEEeecCCCe-EEEEEeCC
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISE--TV--WKNPGGRLIGMSWSEDQT-LICVVQDG 108 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~t--i~--~~~~~~~I~~~~fs~de~-Lv~v~~dG 108 (839)
...++++|+|..++.. .+++|+||+. .|+.+.. +. .|. +.|.++.|+|++. |++++.||
T Consensus 97 V~~~~~s~d~~~l~~s-------------~dg~v~lWd~~~~~~~~~~~~~~~~h~--~~V~~v~~spdg~~l~sgs~dg 161 (357)
T 4g56_B 97 VTDVAWVSEKGILVAS-------------DSGAVELWEILEKESLLVNKFAKYEHD--DIVKTLSVFSDGTQAVSGGKDF 161 (357)
T ss_dssp EEEEEEETTTEEEEEE-------------TTSCEEEC--------CCCCEEECCCS--SCEEEEEECSSSSEEEEEETTS
T ss_pred EEEEEEcCCCCEEEEE-------------CCCEEEEeeccccceeEEEeeccCCCC--CCEEEEEECCCCCEEEEEeCCC
Confidence 4578999998876643 4789999995 4554332 32 455 8899999999987 68999999
Q ss_pred eEEEEeCC-CCccccCCCCCccccccCeEEEEEECCeE-EEEe-cCCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCC
Q 003205 109 TVYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGV-VCVT-EANRYFCMADFATMKVCELARPEVEELPHCVAVIEP 185 (839)
Q Consensus 109 tv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~-v~~t-~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~ 185 (839)
+|++|++. |+......+| ...|..+.|+++|- .+++ +......+|++..+.......... ......++
T Consensus 162 ~v~iwd~~~~~~~~~~~~h-----~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~-~~~~v~~v--- 232 (357)
T 4g56_B 162 SVKVWDLSQKAVLKSYNAH-----SSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCA-SDTIPTSV--- 232 (357)
T ss_dssp CEEEEETTTTEEEEEECCC-----SSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTT-CCSCEEEE---
T ss_pred eEEEEECCCCcEEEEEcCC-----CCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecc-ccccccch---
Confidence 99999864 6666656677 67799999988652 3333 333345677776544322111000 11222233
Q ss_pred CCCCCC-cEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCC-cEEEEeecCCeEEEEecCCCCccccccCCC
Q 003205 186 KYTMTG-SVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNG-NFVACFTHDGRLVVNNTNFSSPVIDESCES 258 (839)
Q Consensus 186 ~~S~~~-~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng-~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~ 258 (839)
.|+|++ ..++..+.|++|++|+..... ..+.++|..|+|||+| ++||+++.||+|+||+.+.++.+..+ .+
T Consensus 233 ~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H- 310 (357)
T 4g56_B 233 TWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SH- 310 (357)
T ss_dssp EECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CC-
T ss_pred hhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CC-
Confidence 456675 567777889999999987543 5678899999999998 57999999999999998866666433 33
Q ss_pred CCCCCceeee
Q 003205 259 ALPPEQIAWC 268 (839)
Q Consensus 259 ~~~p~~~~Wc 268 (839)
...+..++|+
T Consensus 311 ~~~V~~vafs 320 (357)
T 4g56_B 311 RDFVTGVAWS 320 (357)
T ss_dssp SSCEEEEEEC
T ss_pred CCCEEEEEEe
Confidence 3356677775
No 66
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.64 E-value=5e-15 Score=161.47 Aligned_cols=186 Identities=16% Similarity=0.131 Sum_probs=136.1
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC--------CCceeEEEecCCCCCeEEEeecCCCe-EEEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA--------GVLISETVWKNPGGRLIGMSWSEDQT-LICV 104 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~--------G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v 104 (839)
....++++|+|..+|+.. .|++|+||+.. ++++.++..|. +.|.++.|+|+++ |+++
T Consensus 60 ~v~~v~~sp~~~~las~s------------~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~--~~V~~v~~sp~g~~las~ 125 (330)
T 2hes_X 60 AIRSVAWRPHTSLLAAGS------------FDSTVSIWAKEESADRTFEMDLLAIIEGHE--NEVKGVAWSNDGYYLATC 125 (330)
T ss_dssp CEEEEEECTTSSEEEEEE------------TTSCEEEEEC-------CCCEEEEEEC------CEEEEEECTTSCEEEEE
T ss_pred CEEEEEECCCCCEEEEEe------------CCCcEEEEEcccCcCccccceeEEEEcCCC--CcEEEEEECCCCCEEEEE
Confidence 456899999999999986 58999999873 45778888888 9999999999997 6899
Q ss_pred EeCCeEEEEeCC-C----CccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCce---EEEcCCCCCCC
Q 003205 105 VQDGTVYRYNIH-A----ELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMK---VCELARPEVEE 175 (839)
Q Consensus 105 ~~dGtv~l~~~~-G----~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~---~~~l~~~~~~~ 175 (839)
+.||+|++|++. + +......+| ...|..+.|+|+|..+++++.+ ...+|+..... ...+.. +
T Consensus 126 s~D~~v~iwd~~~~~~~~~~~~~~~~h-----~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~----h 196 (330)
T 2hes_X 126 SRDKSVWIWETDESGEEYECISVLQEH-----SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG----H 196 (330)
T ss_dssp ETTSCEEEEECCTTCCCCEEEEEECCC-----SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC----C
T ss_pred eCCCEEEEEeccCCCCCeEEEEEeccC-----CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccC----C
Confidence 999999999873 2 223445667 6779999999999888887532 23344433221 222321 3
Q ss_pred CCceEEEeCCCCCCC--CcEEEEEEeCCeEEEEecCCc--------c------cccCCCceEEEECCCCcEEEEeecCCe
Q 003205 176 LPHCVAVIEPKYTMT--GSVEVLIGTDAGILMLDEDGV--------Q------KVDDTLSQKMAVSPNGNFVACFTHDGR 239 (839)
Q Consensus 176 ~~~~w~vi~~~~S~~--~~~~v~~s~d~tv~l~~~~~~--------~------~~~~~~i~~ia~Spng~~iA~~~~~g~ 239 (839)
....|++ .|+|+ +..++..+.|++|++|+..+. . ..+..+|..+++||++ .||+++.||+
T Consensus 197 ~~~v~~~---~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~ 272 (330)
T 2hes_X 197 EGTVWSS---DFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV 272 (330)
T ss_dssp SSCEEEE---EECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC
T ss_pred CCcEEEE---EecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE
Confidence 3344555 56667 667888899999999987542 1 1377889999999886 8999999999
Q ss_pred EEEEecC
Q 003205 240 LVVNNTN 246 (839)
Q Consensus 240 i~i~ssd 246 (839)
|.||+..
T Consensus 273 v~iw~~~ 279 (330)
T 2hes_X 273 LAVYEEV 279 (330)
T ss_dssp EEEEEEE
T ss_pred EEEEEcC
Confidence 9999865
No 67
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.64 E-value=6.1e-15 Score=188.87 Aligned_cols=253 Identities=12% Similarity=0.051 Sum_probs=186.1
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVY 111 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~ 111 (839)
....++++|+|..+|+.. .++.|++|+. +|+.+.++..|. +.|.++.|+|++. |++++.||+|+
T Consensus 963 ~i~~~~~sp~g~~l~~g~------------~~g~i~i~d~~~~~~~~~~~~h~--~~v~~l~~s~dg~~l~s~~~dg~i~ 1028 (1249)
T 3sfz_A 963 QVSCCCLSPHLEYVAFGD------------EDGAIKIIELPNNRVFSSGVGHK--KAVRHIQFTADGKTLISSSEDSVIQ 1028 (1249)
T ss_dssp CEEEEEECTTSSEEEEEE------------TTSCCEEEETTTTSCEEECCCCS--SCCCCEEECSSSSCEEEECSSSBEE
T ss_pred cEEEEEEcCCCCEEEEEc------------CCCCEEEEEcCCCceeeecccCC--CceEEEEECCCCCEEEEEcCCCEEE
Confidence 345789999999999986 5799999994 788889899888 9999999999997 78999999999
Q ss_pred EEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCce-EEEcCCCCCCCCCceEEEeCCCCCCC
Q 003205 112 RYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMK-VCELARPEVEELPHCVAVIEPKYTMT 190 (839)
Q Consensus 112 l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~-~~~l~~~~~~~~~~~w~vi~~~~S~~ 190 (839)
+|++.........+| ...|..+.++++|.++..+......+|++.+.. ...+.. +... |....|||+
T Consensus 1029 vwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~----~~~~---v~~~~~s~d 1096 (1249)
T 3sfz_A 1029 VWNWQTGDYVFLQAH-----QETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTC----HQGT---VLSCAISSD 1096 (1249)
T ss_dssp EEETTTTEEECCBCC-----SSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEEC----CSSC---CCCEEECSS
T ss_pred EEECCCCceEEEecC-----CCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcc----cCCc---EEEEEECCC
Confidence 999754443345566 677999999998887766655555667765432 223321 1111 222256779
Q ss_pred CcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccc---------cC
Q 003205 191 GSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDE---------SC 256 (839)
Q Consensus 191 ~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~---------~~ 256 (839)
|..++..+.|++|++|+..... ..|.++|..++|||+|+++|+++.||+|++|+..-++.+..+ ..
T Consensus 1097 ~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 1176 (1249)
T 3sfz_A 1097 ATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTAT 1176 (1249)
T ss_dssp SSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------
T ss_pred CCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccc
Confidence 9999999999999999987443 567889999999999999999999999999997655555443 12
Q ss_pred CCCCCCCceeeecCceE-------EEEecC-----EEEEEcCCC--CceEeccCCCeEEeecCCc-eEEEcc
Q 003205 257 ESALPPEQIAWCGMDSV-------LLYWND-----MLVMVAPQA--EPVQYFYDEPLVLIPECDG-VRILSN 313 (839)
Q Consensus 257 ~~~~~p~~~~WcG~d~v-------v~~~~~-----~l~lig~~~--~~v~f~~~~~~~l~~E~DG-vRIit~ 313 (839)
+ ...+..++|+.+... +..|+- ...+.++.+ ..+.|++|+..+++...|| +++|.-
T Consensus 1177 ~-~~~v~~l~fs~dg~~l~s~~g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1177 H-GGWVTDVCFSPDSKTLVSAGGYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp C-CSCCCEEEECTTSSCEEEESSSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred c-CceEEEEEECCCCCEEEECCCeEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEee
Confidence 2 345778888754433 334541 112223333 2688888888888888898 888863
No 68
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.64 E-value=2.6e-14 Score=158.41 Aligned_cols=261 Identities=11% Similarity=0.108 Sum_probs=175.9
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCC-------ceeEEEecCCCCCeEEEeecCC----C--
Q 003205 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV-------LISETVWKNPGGRLIGMSWSED----Q-- 99 (839)
Q Consensus 33 l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~-------ll~ti~~~~~~~~I~~~~fs~d----e-- 99 (839)
-....++++| ..+|+.+ .+++|+||+..+. ++.++..|. +.|.++.|+|+ +
T Consensus 17 ~~i~~~~~~~--~~l~s~~------------~dg~i~iw~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~g~~ 80 (397)
T 1sq9_A 17 ADIFSVSACN--SFTVSCS------------GDGYLKVWDNKLLDNENPKDKSYSHFVHK--SGLHHVDVLQAIERDAFE 80 (397)
T ss_dssp SCEEEEEECS--SEEEEEE------------TTSEEEEEESBCCTTCCGGGGEEEEECCT--TCEEEEEEEEEEETTTEE
T ss_pred cCeEEEEecC--CeEEEEc------------CCCEEEEEECCCcccccCCCcceEEecCC--CcEEEEEEecccccCCcc
Confidence 3556788888 6888876 5899999997654 588899888 99999999999 7
Q ss_pred -e-EEEEEeCCeEEEEeCC-CCc-----cccCCCCCccccccCeEEEEEE----CCeEE-EEec--CCeEEEEecCCC--
Q 003205 100 -T-LICVVQDGTVYRYNIH-AEL-----IEPNASMGKECFEENVVECVFW----GNGVV-CVTE--ANRYFCMADFAT-- 162 (839)
Q Consensus 100 -~-Lv~v~~dGtv~l~~~~-G~~-----~~~~~g~~~~~~~~~V~~~~~~----~~G~v-~~t~--~~~~~~v~~~~~-- 162 (839)
. |++++.||+|++|++. ++. .....+|........|..+.+. ++|-. +++. ++.+. ++++..
T Consensus 81 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~-iwd~~~~~ 159 (397)
T 1sq9_A 81 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTY-IWKFHPFA 159 (397)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEE-EEEEESSS
T ss_pred ccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEE-EEeCCccc
Confidence 5 6799999999999864 342 3333334100001569999999 88876 6664 44443 333322
Q ss_pred ----ce-EE-----EcCC---CCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cc---c---CCC
Q 003205 163 ----MK-VC-----ELAR---PEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KV---D---DTL 218 (839)
Q Consensus 163 ----~~-~~-----~l~~---~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~---~---~~~ 218 (839)
.. .. .+.. .........+++ .|+|++ .++..+.|++|++|+..... .. + ..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~ 235 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSV---DISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 235 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEE---EECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC
T ss_pred cccccceeeccCcceeeeeeccccCCCCCceEE---EECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCc
Confidence 11 11 1110 000011111222 456689 88888889999999987543 34 6 889
Q ss_pred ceEEEECCCCcEEEEeecC---CeEEEEecCCCCccccccC-------------CCCCCCCceeee---------cCceE
Q 003205 219 SQKMAVSPNGNFVACFTHD---GRLVVNNTNFSSPVIDESC-------------ESALPPEQIAWC---------GMDSV 273 (839)
Q Consensus 219 i~~ia~Spng~~iA~~~~~---g~i~i~ssd~~~~l~e~~~-------------~~~~~p~~~~Wc---------G~d~v 273 (839)
+..++|||+|+++|+++.+ |+|.+|+..-.+.+.++.. + ...+..+.|+ +.|..
T Consensus 236 i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~ 314 (397)
T 1sq9_A 236 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH-SSWVMSLSFNDSGETLCSAGWDGK 314 (397)
T ss_dssp EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB-SSCEEEEEECSSSSEEEEEETTSE
T ss_pred cceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccccc-CCcEEEEEECCCCCEEEEEeCCCe
Confidence 9999999999999999999 9999999776666666655 4 3456677776 45666
Q ss_pred EEEecC-----EEEEE------cC---------------CCC--ceEeccCC----------CeEEeecCCc-eEEEccC
Q 003205 274 LLYWND-----MLVMV------AP---------------QAE--PVQYFYDE----------PLVLIPECDG-VRILSNS 314 (839)
Q Consensus 274 v~~~~~-----~l~li------g~---------------~~~--~v~f~~~~----------~~~l~~E~DG-vRIit~~ 314 (839)
+..|+- ...+. ++ .+. .+.|.+++ ..+++...|| |+||..+
T Consensus 315 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 315 LRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp EEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred EEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 777753 23344 44 343 78888887 6888888998 9999865
Q ss_pred c
Q 003205 315 S 315 (839)
Q Consensus 315 ~ 315 (839)
.
T Consensus 395 ~ 395 (397)
T 1sq9_A 395 G 395 (397)
T ss_dssp C
T ss_pred C
Confidence 4
No 69
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.63 E-value=4.8e-14 Score=159.81 Aligned_cols=273 Identities=15% Similarity=0.130 Sum_probs=197.0
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeC
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNI 115 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~ 115 (839)
..+++++|+.+|+.. .+++|++|+. +|+.+.++..|. +.|.++.|+ +..+++++.||+|++|++
T Consensus 122 ~~~~~~~g~~l~sg~------------~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~-~~~l~s~~~dg~i~vwd~ 186 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGS------------DDNTLKVWSAVTGKCLRTLVGHT--GGVWSSQMR-DNIIISGSTDRTLKVWNA 186 (445)
T ss_dssp EEEEEEETTEEEEEE------------TTSCEEEEETTTCCEEEECCCCS--SCEEEEEEE-TTEEEEEETTSCEEEEET
T ss_pred EEEEEEcCCEEEEEE------------CCCcEEEEECCCCcEEEEEcCCC--CCEEEEEec-CCEEEEEeCCCeEEEEEC
Confidence 346788888988886 5899999995 799999999998 999999998 557899999999999996
Q ss_pred -CCCccccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCce-EEEcCCCCCCCCCceEEEeCCCCCCCCcE
Q 003205 116 -HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMK-VCELARPEVEELPHCVAVIEPKYTMTGSV 193 (839)
Q Consensus 116 -~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~-~~~l~~~~~~~~~~~w~vi~~~~S~~~~~ 193 (839)
.|+......+| ...|..+.+.++.++..+.++.+. ++++.... ...+.. +.....++ .. +|+.
T Consensus 187 ~~~~~~~~~~~h-----~~~v~~~~~~~~~l~s~s~dg~i~-~wd~~~~~~~~~~~~----~~~~v~~~-~~----~~~~ 251 (445)
T 2ovr_B 187 ETGECIHTLYGH-----TSTVRCMHLHEKRVVSGSRDATLR-VWDIETGQCLHVLMG----HVAAVRCV-QY----DGRR 251 (445)
T ss_dssp TTTEEEEEECCC-----SSCEEEEEEETTEEEEEETTSEEE-EEESSSCCEEEEEEC----CSSCEEEE-EE----CSSC
T ss_pred CcCcEEEEECCC-----CCcEEEEEecCCEEEEEeCCCEEE-EEECCCCcEEEEEcC----CcccEEEE-EE----CCCE
Confidence 46666666677 667888888777766666666654 45555332 333322 22222222 11 7889
Q ss_pred EEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeee
Q 003205 194 EVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC 268 (839)
Q Consensus 194 ~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~Wc 268 (839)
++..+.|++|++|+..... ..+.+++..+++ +|+++++++.||+|.+|+..-.+.+..+..+ ...+..+.|.
T Consensus 252 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~ 328 (445)
T 2ovr_B 252 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH-QSLTSGMELK 328 (445)
T ss_dssp EEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCC-CSCEEEEEEE
T ss_pred EEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC-cccEEEEEEe
Confidence 9999999999999977543 467788999988 8899999999999999997766766666554 2334445544
Q ss_pred -------cCceEEEEecC----E-EEEEc---CCCCceEeccCCCeEEeecCCc-eEEEccCcceeeecc-----chhhH
Q 003205 269 -------GMDSVLLYWND----M-LVMVA---PQAEPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRV-----PASTE 327 (839)
Q Consensus 269 -------G~d~vv~~~~~----~-l~lig---~~~~~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~V-----p~~~~ 327 (839)
+.|..+..|+- . ..+.+ +.+.-....+++..++++..|| |+||.....+.++.+ ..+..
T Consensus 329 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 408 (445)
T 2ovr_B 329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG 408 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCc
Confidence 46677777752 2 33444 2233233444778888999999 999999989999888 45566
Q ss_pred hhhccCCCChhhhHH
Q 003205 328 QIFAIGSTSPAALLY 342 (839)
Q Consensus 328 ~vf~igS~~pga~L~ 342 (839)
.|..+..++.+.+|+
T Consensus 409 ~v~~~~~s~~~~~la 423 (445)
T 2ovr_B 409 VVWRIRASNTKLVCA 423 (445)
T ss_dssp EEEEEEECSSEEEEE
T ss_pred eEEEEEecCCEEEEE
Confidence 677776666555443
No 70
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.63 E-value=3.7e-14 Score=154.52 Aligned_cols=259 Identities=10% Similarity=0.078 Sum_probs=177.6
Q ss_pred CCCCEEEEcCC---CCeEEEEecCchhhhhhcccCCceEEEEcCC-CCceeEEEecCC---CCCeEEEeecCC----Ce-
Q 003205 33 LSRNKVACAPF---GGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISETVWKNP---GGRLIGMSWSED----QT- 100 (839)
Q Consensus 33 l~~~~va~sp~---Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G~ll~ti~~~~~---~~~I~~~~fs~d----e~- 100 (839)
-....++++|+ |....++. ..++.|+||+.. |+.+..+..+.. .+.|.++.|+|+ +.
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~-----------~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 87 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFAT-----------VGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPL 87 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEE-----------EETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEE
T ss_pred CceEEEEEecccCCCCceEEEE-----------CCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCE
Confidence 35568899985 55333322 135699999976 888888775431 167999999998 44
Q ss_pred EEEEEeCCeEEEEeCC-CCccccCCCCCccccccCeEEEEEEC-CeEEEEecCC-eEEEEecCCCceE-EEcCCCCCCCC
Q 003205 101 LICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWG-NGVVCVTEAN-RYFCMADFATMKV-CELARPEVEEL 176 (839)
Q Consensus 101 Lv~v~~dGtv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~~-~~~~v~~~~~~~~-~~l~~~~~~~~ 176 (839)
|++++.||+|++|++. |+......+| ...|..+.+++ +|..+++++. ....+|++..... ..+... .+..
T Consensus 88 l~~~~~dg~i~v~d~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~ 161 (366)
T 3k26_A 88 LAVAGSRGIIRIINPITMQCIKHYVGH-----GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-EGHR 161 (366)
T ss_dssp EEEEETTCEEEEECTTTCCEEEEEESC-----CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST-TSCS
T ss_pred EEEecCCCEEEEEEchhceEeeeecCC-----CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc-cccc
Confidence 6899999999999864 6666656667 67899999998 8877777643 2345666664433 333210 0122
Q ss_pred CceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cc----------------------------cCCCceEEE
Q 003205 177 PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KV----------------------------DDTLSQKMA 223 (839)
Q Consensus 177 ~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~----------------------------~~~~i~~ia 223 (839)
...+++ .|+|++..++..+.|++|++|+..... .. +.++|..++
T Consensus 162 ~~v~~~---~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (366)
T 3k26_A 162 DEVLSA---DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR 238 (366)
T ss_dssp SCEEEE---EECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE
T ss_pred CceeEE---EECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE
Confidence 233333 566799999999999999999988543 11 788899999
Q ss_pred ECCCCcEEEEeecCCeEEEEecCCCCc--------------cccccCCCCCCCCceee-----------ecCceEEEEec
Q 003205 224 VSPNGNFVACFTHDGRLVVNNTNFSSP--------------VIDESCESALPPEQIAW-----------CGMDSVLLYWN 278 (839)
Q Consensus 224 ~Spng~~iA~~~~~g~i~i~ssd~~~~--------------l~e~~~~~~~~p~~~~W-----------cG~d~vv~~~~ 278 (839)
++ |+++++++.+|+|.+|+..-.+. +..+..+ ...+..+.| ++.|..+..|+
T Consensus 239 ~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd 315 (366)
T 3k26_A 239 WL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS-QCDIWYMRFSMDFWQKMLALGNQVGKLYVWD 315 (366)
T ss_dssp EE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS-SCCSSCCCCEECTTSSEEEEECTTSCEEEEE
T ss_pred Ec--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc-CCcEEEEEEcCCCCCcEEEEEecCCcEEEEE
Confidence 99 77999999999999998653332 2233322 122333333 35667777775
Q ss_pred C--------E-EEEEcC--CCC--ceEeccCCCeEEeecCCc-eEEEccC
Q 003205 279 D--------M-LVMVAP--QAE--PVQYFYDEPLVLIPECDG-VRILSNS 314 (839)
Q Consensus 279 ~--------~-l~lig~--~~~--~v~f~~~~~~~l~~E~DG-vRIit~~ 314 (839)
- . ..+.++ .+. .+.|.+++..+++...|| |+||.-.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 316 LEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 3 1 256666 233 688988999999999998 9999753
No 71
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.62 E-value=6.3e-14 Score=170.84 Aligned_cols=248 Identities=13% Similarity=0.008 Sum_probs=178.9
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeE
Q 003205 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTV 110 (839)
Q Consensus 33 l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv 110 (839)
-....++++|+|..||+.. .+++|+||+ .+|+.+.++..|. +.|.++.|+|++. |++++.||+|
T Consensus 56 ~~v~~~~~s~~~~~l~~~~------------~dg~i~vw~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i 121 (814)
T 3mkq_A 56 TPVRAGKFIARKNWIIVGS------------DDFRIRVFNYNTGEKVVDFEAHP--DYIRSIAVHPTKPYVLSGSDDLTV 121 (814)
T ss_dssp SCEEEEEEEGGGTEEEEEE------------TTSEEEEEETTTCCEEEEEECCS--SCEEEEEECSSSSEEEEEETTSEE
T ss_pred CcEEEEEEeCCCCEEEEEe------------CCCeEEEEECCCCcEEEEEecCC--CCEEEEEEeCCCCEEEEEcCCCEE
Confidence 3456899999999999987 489999999 5789999999998 9999999999996 6899999999
Q ss_pred EEEeCCCC--ccccCCCCCccccccCeEEEEEEC-CeEEEEecCC-eEEEEecCCCce-EEEcCCCCCCCCCceEEEeCC
Q 003205 111 YRYNIHAE--LIEPNASMGKECFEENVVECVFWG-NGVVCVTEAN-RYFCMADFATMK-VCELARPEVEELPHCVAVIEP 185 (839)
Q Consensus 111 ~l~~~~G~--~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~~-~~~~v~~~~~~~-~~~l~~~~~~~~~~~w~vi~~ 185 (839)
++|++.+. ......+| ...|..+.+++ +|..+++++. ....++++.++. ...+... ......+ +
T Consensus 122 ~vw~~~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~~~v~~--~--- 190 (814)
T 3mkq_A 122 KLWNWENNWALEQTFEGH-----EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG-QERGVNY--V--- 190 (814)
T ss_dssp EEEEGGGTSEEEEEEECC-----SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC-CTTCCCE--E---
T ss_pred EEEECCCCceEEEEEcCC-----CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC-CCCCEEE--E---
Confidence 99997643 34555566 66799999999 8877776543 234456654322 2222211 0012222 2
Q ss_pred CCCC--CCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCC
Q 003205 186 KYTM--TGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCES 258 (839)
Q Consensus 186 ~~S~--~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~ 258 (839)
.|+| ++..++..+.|++|.+|+..... ..+.+++..+++||+|+++|+++.||+|.+|+..-.+.+..+..+
T Consensus 191 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~- 269 (814)
T 3mkq_A 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG- 269 (814)
T ss_dssp EECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS-
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC-
Confidence 3344 88999999999999999977543 467889999999999999999999999999998766776666555
Q ss_pred CCCCCceeeecCce---EEEEecCEEEEEcCCC--CceEeccCCCeEEeecCC
Q 003205 259 ALPPEQIAWCGMDS---VLLYWNDMLVMVAPQA--EPVQYFYDEPLVLIPECD 306 (839)
Q Consensus 259 ~~~p~~~~WcG~d~---vv~~~~~~l~lig~~~--~~v~f~~~~~~~l~~E~D 306 (839)
...+..++|+.+.. ++...++.+.++.... ..+.+.+++..+.+...+
T Consensus 270 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 322 (814)
T 3mkq_A 270 LERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKN 322 (814)
T ss_dssp SSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTT
T ss_pred CCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECccc
Confidence 34677888885543 5555666555544332 255555555555544433
No 72
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.62 E-value=1.1e-14 Score=162.14 Aligned_cols=269 Identities=13% Similarity=0.137 Sum_probs=187.9
Q ss_pred ceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEEEC
Q 003205 66 RKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWG 142 (839)
Q Consensus 66 ~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~ 142 (839)
.++..|+. ......++..|. +.|.++.|+|++. |++++.||+|++||. .|+......+| ...|.++.|++
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH~--~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h-----~~~v~~~~~s~ 118 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGHS--GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLH-----CPWVMECAFAP 118 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCCS--SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECC-----CTTCCCCEECT
T ss_pred ccccccccceeEEeecccccc--cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecC-----CCCEEEEEECC
Confidence 33444554 455677899998 9999999999987 789999999999986 45555555566 56788999999
Q ss_pred CeEEEEecCCe-EEEEecCCCceE--EEcCCCC-CCCCCceEEEeCCCCCCCC-cEEEEEEeCCeEEEEecCCcc-----
Q 003205 143 NGVVCVTEANR-YFCMADFATMKV--CELARPE-VEELPHCVAVIEPKYTMTG-SVEVLIGTDAGILMLDEDGVQ----- 212 (839)
Q Consensus 143 ~G~v~~t~~~~-~~~v~~~~~~~~--~~l~~~~-~~~~~~~w~vi~~~~S~~~-~~~v~~s~d~tv~l~~~~~~~----- 212 (839)
+|..+++++.+ ...++++..... ..++... + ..... .+..-.|+|++ ..++..+.|++|++||.....
T Consensus 119 ~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~-~gh~~-~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~ 196 (380)
T 3iz6_a 119 NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVL-TGHKG-YASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIF 196 (380)
T ss_dssp TSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBC-CCCSS-CCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEE
T ss_pred CCCEEEEeeCCCcEEEEECCCCccccCCccceeec-cCCCc-ceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEe
Confidence 99999997653 344555542110 0000000 1 01111 12233456664 568888899999999987432
Q ss_pred -----cccCCCceEEEECC-CCcEEEEeecCCeEEEEecC-CCCccccccCCCCCCCCceeee---------cCceEEEE
Q 003205 213 -----KVDDTLSQKMAVSP-NGNFVACFTHDGRLVVNNTN-FSSPVIDESCESALPPEQIAWC---------GMDSVLLY 276 (839)
Q Consensus 213 -----~~~~~~i~~ia~Sp-ng~~iA~~~~~g~i~i~ssd-~~~~l~e~~~~~~~~p~~~~Wc---------G~d~vv~~ 276 (839)
..|..++..++++| ++.++|+++.||+|++|+.. ..+.+..+..+ ...+..+.|+ +.|..+..
T Consensus 197 ~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~D~~i~l 275 (380)
T 3iz6_a 197 GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGH-EGDINSVKFFPDGQRFGTGSDDGTCRL 275 (380)
T ss_dssp CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCC-SSCCCEEEECTTSSEEEEECSSSCEEE
T ss_pred ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCc-CCCeEEEEEecCCCeEEEEcCCCeEEE
Confidence 34677899999977 89999999999999999865 34555556555 3456677775 67777888
Q ss_pred ecC----EEEEEcC-C---------CCceEeccCCCeEEeecCCc-eEEEccCcceeeecc----chhhHhhhccCCCCh
Q 003205 277 WND----MLVMVAP-Q---------AEPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRV----PASTEQIFAIGSTSP 337 (839)
Q Consensus 277 ~~~----~l~lig~-~---------~~~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~V----p~~~~~vf~igS~~p 337 (839)
|+- .+..+.. . -..+.|.+++..+++...|| |+||.....+.+..+ ..|...|..+..++.
T Consensus 276 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 355 (380)
T 3iz6_a 276 FDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSD 355 (380)
T ss_dssp EETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSS
T ss_pred EECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCC
Confidence 863 2333321 1 12678999999999999999 999998777777666 467777888877777
Q ss_pred hhhHHHH
Q 003205 338 AALLYDA 344 (839)
Q Consensus 338 ga~L~~A 344 (839)
|..|+.+
T Consensus 356 g~~l~sg 362 (380)
T 3iz6_a 356 GSALCTG 362 (380)
T ss_dssp SSEEEEE
T ss_pred CCEEEEe
Confidence 7766554
No 73
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.61 E-value=3e-14 Score=159.35 Aligned_cols=253 Identities=10% Similarity=0.046 Sum_probs=174.5
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC-CceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEE
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-VLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRY 113 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G-~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~ 113 (839)
..++++|+|..+|+.. .++.|++|+... +....+..+ +.+....|++++. |++++.||+|++|
T Consensus 60 ~~~~~s~~g~~l~~~~------------~d~~v~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~i~iw 124 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKAR------------LDGHDFLFNTIIRDGSKMLKRA---DYTAVDTAKLQMRRFILGTTEGDIKVL 124 (420)
T ss_dssp TTCEEEEEETTEEEEE------------ETTEEEEEECCSEETTTTSCSC---CEEEEEEECSSSCEEEEEETTSCEEEE
T ss_pred cceeeeecCCeEEEEE------------cCCcEEEEEecccceeeEEecC---CceEEEEEecCCCEEEEEECCCCEEEE
Confidence 4689999999999987 579999999654 343333322 3344447889887 6799999999999
Q ss_pred eCCCC-ccccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCc-eEEEcCCCCCCCCCceEEEeCCCCCCC
Q 003205 114 NIHAE-LIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATM-KVCELARPEVEELPHCVAVIEPKYTMT 190 (839)
Q Consensus 114 ~~~G~-~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~-~~~~l~~~~~~~~~~~w~vi~~~~S~~ 190 (839)
++.+. ......+| ...|..+.++++|..+++++. ....+|++... ....+.. +....+++ .|+|+
T Consensus 125 d~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~----h~~~v~~~---~~~~~ 192 (420)
T 3vl1_A 125 DSNFNLQREIDQAH-----VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG----HRATVTDI---AIIDR 192 (420)
T ss_dssp CTTSCEEEEETTSS-----SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEEC----CSSCEEEE---EEETT
T ss_pred eCCCcceeeecccc-----cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcC----CCCcEEEE---EEcCC
Confidence 97544 45545577 678999999999977777643 34556666533 2233321 22222333 56679
Q ss_pred CcEEEEEEeCCeEEEEecCCcc-----c---cc---------------------CCCceEEEECCCCcEEEEeecCCeEE
Q 003205 191 GSVEVLIGTDAGILMLDEDGVQ-----K---VD---------------------DTLSQKMAVSPNGNFVACFTHDGRLV 241 (839)
Q Consensus 191 ~~~~v~~s~d~tv~l~~~~~~~-----~---~~---------------------~~~i~~ia~Spng~~iA~~~~~g~i~ 241 (839)
+..++..+.|++|++|+..... . .+ ..++..++|||+|+++|+++.+|+|.
T Consensus 193 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 272 (420)
T 3vl1_A 193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVIT 272 (420)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEE
T ss_pred CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEE
Confidence 9999999999999999977433 1 12 35566677799999999999999999
Q ss_pred EEecCCCCccccccCCCCCCCCceeee----------cCceEEEEecC------EEEEEcCCCC--ceEeccCCCeEEee
Q 003205 242 VNNTNFSSPVIDESCESALPPEQIAWC----------GMDSVLLYWND------MLVMVAPQAE--PVQYFYDEPLVLIP 303 (839)
Q Consensus 242 i~ssd~~~~l~e~~~~~~~~p~~~~Wc----------G~d~vv~~~~~------~l~lig~~~~--~v~f~~~~~~~l~~ 303 (839)
+|+..-.+.+..+.......+..+.|+ +.|..+..|+- ...+.++.+. +..++.++..+++.
T Consensus 273 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~ 352 (420)
T 3vl1_A 273 VHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSS 352 (420)
T ss_dssp EEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEE
T ss_pred EEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEe
Confidence 999775665555543323455666665 34556666752 2345554443 33355677788889
Q ss_pred cCCc-eEEEccCc
Q 003205 304 ECDG-VRILSNSS 315 (839)
Q Consensus 304 E~DG-vRIit~~~ 315 (839)
..|| ||||....
T Consensus 353 ~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 353 GFDTSIKLDIISD 365 (420)
T ss_dssp TTTEEEEEEEECC
T ss_pred cCCccEEEEeccC
Confidence 9998 99999654
No 74
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.61 E-value=7.1e-15 Score=165.83 Aligned_cols=258 Identities=12% Similarity=0.143 Sum_probs=177.1
Q ss_pred EEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEE-EecCCCCCeEEEeecC-CCe-EEEEEeCCeEEEEeC
Q 003205 39 ACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISET-VWKNPGGRLIGMSWSE-DQT-LICVVQDGTVYRYNI 115 (839)
Q Consensus 39 a~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti-~~~~~~~~I~~~~fs~-de~-Lv~v~~dGtv~l~~~ 115 (839)
.++|+|..+|... .|+..|+++.++ ..|. +.|.++.|+| ++. |++++.||+|++|++
T Consensus 34 ~f~~~~~~~~~~~------------------~w~~~g~~~~~~~~~h~--~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~ 93 (437)
T 3gre_A 34 EFGPIQEIVRSPN------------------MGNLRGKLIATLMENEP--NSITSSAVSPGETPYLITGSDQGVIKIWNL 93 (437)
T ss_dssp GGCCCCCCCCCCC------------------GGGCCCCEEEEECTTTT--SCEEEEEEECSSSCEEEEEETTSEEEEEEH
T ss_pred hcCCccccccccc------------------cccccceEEeeeccCCC--CceEEEEECCCCCCEEEEecCCceEEEeEC
Confidence 4688887776542 399999999999 8888 9999999999 886 689999999999986
Q ss_pred C----CC-c-cccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCC----CceEEEcC-----CC---C--CC
Q 003205 116 H----AE-L-IEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFA----TMKVCELA-----RP---E--VE 174 (839)
Q Consensus 116 ~----G~-~-~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~----~~~~~~l~-----~~---~--~~ 174 (839)
. |. + ....++| ...|..+.+.++|..+++++. ....+|+++ +.....+. .. + ..
T Consensus 94 ~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 168 (437)
T 3gre_A 94 KEIIVGEVYSSSLTYDC-----SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKN 168 (437)
T ss_dssp HHHHTTCCCSCSEEEEC-----SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSC
T ss_pred cccccCcccceeeeccC-----CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccc
Confidence 4 32 2 1233356 677999999998877776543 233444442 11111110 00 0 00
Q ss_pred CCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cc--cCCCceEEEECCCCcEEEEeecCCeEEEEecCC
Q 003205 175 ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KV--DDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNF 247 (839)
Q Consensus 175 ~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~--~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~ 247 (839)
....+ +...+++++..++..+.|++|++||..... .. +.++|..++|||+|+++|+++.||+|.+|+...
T Consensus 169 ~~~~~---~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 245 (437)
T 3gre_A 169 EYAVR---MRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF 245 (437)
T ss_dssp CCEEE---EEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred cCceE---EEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC
Confidence 11111 111255689999999999999999987543 23 678999999999999999999999999999876
Q ss_pred CCccccccCCCCCCCCceeee-------------cCceEEEEecC-----EEEEEcCCCC--------------------
Q 003205 248 SSPVIDESCESALPPEQIAWC-------------GMDSVLLYWND-----MLVMVAPQAE-------------------- 289 (839)
Q Consensus 248 ~~~l~e~~~~~~~~p~~~~Wc-------------G~d~vv~~~~~-----~l~lig~~~~-------------------- 289 (839)
.+.+.++..........+.|| +.|..+..|+- ...+.|+.+.
T Consensus 246 ~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (437)
T 3gre_A 246 NVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCG 325 (437)
T ss_dssp TEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCC
T ss_pred ccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecc
Confidence 666665542212233444443 57777888863 2344444321
Q ss_pred --------ceEeccCCCeEEeecCCc-eEEEccCcceeeeccchh
Q 003205 290 --------PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPAS 325 (839)
Q Consensus 290 --------~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~ 325 (839)
.+.|. ++..+++...|| ||+|.....+.++.+..+
T Consensus 326 ~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 369 (437)
T 3gre_A 326 IRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISP 369 (437)
T ss_dssp CCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC
T ss_pred cccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecc
Confidence 34555 556788888998 999999988888877765
No 75
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.2e-14 Score=169.06 Aligned_cols=260 Identities=12% Similarity=0.041 Sum_probs=154.8
Q ss_pred cCCceEEEEcCCCCce-----eEEEecCCCCCeEEEeecCC------C-eEEEEEeCCeEEEEeCCCCc-c---------
Q 003205 63 SALRKLRIFNSAGVLI-----SETVWKNPGGRLIGMSWSED------Q-TLICVVQDGTVYRYNIHAEL-I--------- 120 (839)
Q Consensus 63 ~~~~~I~iy~~~G~ll-----~ti~~~~~~~~I~~~~fs~d------e-~Lv~v~~dGtv~l~~~~G~~-~--------- 120 (839)
+.|++|+||+.++..+ .++..+. +.|.++.|+|+ + .|++++.||+|++|++.... .
T Consensus 180 s~D~tI~iWd~~~~~~~~~~~~~l~~~~--~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~ 257 (524)
T 2j04_B 180 KHSSCIQIFKMNTSTLHCVKVQTIVHSF--GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEK 257 (524)
T ss_dssp --CEEEEEEEEETTTCCEEEEEEEEECC--CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCS
T ss_pred CCCceEEEEEccCCCCCceEEEEEEecC--CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecC
Confidence 4799999999765432 4466677 89999999997 3 47899999999999975331 1
Q ss_pred --ccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCc-eE-EEcCCCCCCCCCceEEEeCCCCCCCC-cEE
Q 003205 121 --EPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATM-KV-CELARPEVEELPHCVAVIEPKYTMTG-SVE 194 (839)
Q Consensus 121 --~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~-~~-~~l~~~~~~~~~~~w~vi~~~~S~~~-~~~ 194 (839)
....+| ...|..+.|.+++. +++++. ....+|++..+ .+ ..+.. +....++| ...|+++| +++
T Consensus 258 p~~~l~~h-----~~~v~sv~~s~~~~-lasgs~DgtV~lWD~~~~~~~~~~~~~----H~~~V~sv-~~~~s~~g~~~l 326 (524)
T 2j04_B 258 PSLTLSLA-----DSLITTFDFLSPTT-VVCGFKNGFVAEFDLTDPEVPSFYDQV----HDSYILSV-STAYSDFEDTVV 326 (524)
T ss_dssp CSEEECCT-----TTCEEEEEESSSSE-EEEEETTSEEEEEETTBCSSCSEEEEC----SSSCEEEE-EEECCTTSCCEE
T ss_pred ceEEEEcC-----CCCEEEEEecCCCe-EEEEeCCCEEEEEECCCCCCceEEeec----ccccEEEE-EEEcCCCCCeEE
Confidence 123345 56788888888775 555433 34567777633 11 12221 22233333 11356688 899
Q ss_pred EEEEeCCeEEEEecCCcc-----cccC--CCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceee
Q 003205 195 VLIGTDAGILMLDEDGVQ-----KVDD--TLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAW 267 (839)
Q Consensus 195 v~~s~d~tv~l~~~~~~~-----~~~~--~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~W 267 (839)
+.++.|++|++||..... ..+. +.+..++|||+|+.+|+.+.|+++++|+..-...+..+..+ ...+..++|
T Consensus 327 aS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH-~~~V~sva~ 405 (524)
T 2j04_B 327 STVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSR-ETTITAIGV 405 (524)
T ss_dssp EEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEEC-SSCEEEEEC
T ss_pred EEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecC-CCceEEEEe
Confidence 999999999999987532 2232 35889999999999999999999999986544443334444 335566666
Q ss_pred e---------cCceEEEEecCEE-EEEcCCC----------CceEeccCCCeEEeecCCceEEEccC-cceeeeccchhh
Q 003205 268 C---------GMDSVLLYWNDML-VMVAPQA----------EPVQYFYDEPLVLIPECDGVRILSNS-SMEFLQRVPAST 326 (839)
Q Consensus 268 c---------G~d~vv~~~~~~l-~lig~~~----------~~v~f~~~~~~~l~~E~DGvRIit~~-~~~~l~~Vp~~~ 326 (839)
+ |.|..|..|+-.. .+.++.+ ..+.|++++..+.. .|+.+++..+ +...+..++++.
T Consensus 406 Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~--~~~~~~~~~~~~g~~~~~l~gh~ 483 (524)
T 2j04_B 406 SRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRI--DSSYEVYPLTVNDVSKAKIDAHG 483 (524)
T ss_dssp CSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEE--CCCCCCCC-------------CC
T ss_pred CCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEc--cCCceecccccCCcceeeecCCC
Confidence 5 4566666665311 1111110 03445555553322 2334443221 355677778888
Q ss_pred HhhhccCCCChh
Q 003205 327 EQIFAIGSTSPA 338 (839)
Q Consensus 327 ~~vf~igS~~pg 338 (839)
..|+.+..++.+
T Consensus 484 ~~V~~Vafsp~~ 495 (524)
T 2j04_B 484 INITCTKWNETS 495 (524)
T ss_dssp CSCCCEEECCST
T ss_pred ceEEEEECCCCC
Confidence 888888766654
No 76
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.60 E-value=5.5e-14 Score=157.09 Aligned_cols=257 Identities=11% Similarity=0.086 Sum_probs=165.6
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC-----CceeEEEecCCCCCeEEEeecC-CCe-EEEEEeCCe
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-----VLISETVWKNPGGRLIGMSWSE-DQT-LICVVQDGT 109 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G-----~ll~ti~~~~~~~~I~~~~fs~-de~-Lv~v~~dGt 109 (839)
.++++|++..+.... +.++.|+||+... ..+.++..|. +.|.++.|+| ++. |++++.||+
T Consensus 39 ~~~~~~~~~~~~~~~-----------~~~g~i~v~~~~~~~~~~~~~~~~~~h~--~~V~~~~~~p~~~~~l~s~s~dg~ 105 (402)
T 2aq5_A 39 FCAVNPKFMALICEA-----------SGGGAFLVLPLGKTGRVDKNVPLVCGHT--APVLDIAWCPHNDNVIASGSEDCT 105 (402)
T ss_dssp SEEECSSEEEEEBCC-----------SSSCCEEEEETTCCEECCTTCCCBCCCS--SCEEEEEECTTCTTEEEEEETTSE
T ss_pred cEEECCCeEEEEEEE-----------cCCCEEEEEECccCCCCCCCCceEecCC--CCEEEEEeCCCCCCEEEEEeCCCe
Confidence 578888755444332 3689999999643 3566677888 9999999999 776 689999999
Q ss_pred EEEEeCC-C-------CccccCCCCCccccccCeEEEEEECCe-EEEEecCC-eEEEEecCCCceE-EEcCCCCCCCCCc
Q 003205 110 VYRYNIH-A-------ELIEPNASMGKECFEENVVECVFWGNG-VVCVTEAN-RYFCMADFATMKV-CELARPEVEELPH 178 (839)
Q Consensus 110 v~l~~~~-G-------~~~~~~~g~~~~~~~~~V~~~~~~~~G-~v~~t~~~-~~~~v~~~~~~~~-~~l~~~~~~~~~~ 178 (839)
|++|++. | +......+| ...|..+.++++| ..+++++. ....+|++..... ..+.. ..+...
T Consensus 106 v~vw~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~ 178 (402)
T 2aq5_A 106 VMVWEIPDGGLVLPLREPVITLEGH-----TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP--DVHPDT 178 (402)
T ss_dssp EEEEECCTTCCSSCBCSCSEEEECC-----SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT--TTCCSC
T ss_pred EEEEEccCCCCccccCCceEEecCC-----CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec--CCCCCc
Confidence 9999864 3 233445567 6789999999988 45555432 2345666665433 33310 012222
Q ss_pred eEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc------cccCCC-ceEEEECCCCcEEEEe---ecCCeEEEEecCCC
Q 003205 179 CVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTL-SQKMAVSPNGNFVACF---THDGRLVVNNTNFS 248 (839)
Q Consensus 179 ~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~------~~~~~~-i~~ia~Spng~~iA~~---~~~g~i~i~ssd~~ 248 (839)
..++ .|+|+|..++..+.|++|++||..... ..+.+. +..+++||+|++++++ +.+|+|.+|+..-.
T Consensus 179 v~~~---~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 179 IYSV---DWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHL 255 (402)
T ss_dssp EEEE---EECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBC
T ss_pred eEEE---EECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccc
Confidence 2333 466799999999999999999987543 244444 8999999999999998 78999999986532
Q ss_pred Cc-cccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCCceEeccCCCeEE-eecCCc-eEEEccCcce-eeeccch
Q 003205 249 SP-VIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVL-IPECDG-VRILSNSSME-FLQRVPA 324 (839)
Q Consensus 249 ~~-l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~~~l-~~E~DG-vRIit~~~~~-~l~~Vp~ 324 (839)
+. +..........+. .+.|.+++..++ .+..|| |+||.....+ ++..+..
T Consensus 256 ~~~~~~~~~~~~~~v~--------------------------~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~ 309 (402)
T 2aq5_A 256 EEPLSLQELDTSSGVL--------------------------LPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM 309 (402)
T ss_dssp SSCSEEEECCCCSSCE--------------------------EEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE
T ss_pred cCCceEEeccCCCcee--------------------------EEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc
Confidence 22 2222111111122 234455555543 444676 8888776544 2333333
Q ss_pred h--hHhhhccCCCChhhhHH
Q 003205 325 S--TEQIFAIGSTSPAALLY 342 (839)
Q Consensus 325 ~--~~~vf~igS~~pga~L~ 342 (839)
+ ...|..+..++.+.+++
T Consensus 310 ~~~~~~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 310 FSSKESQRGMGYMPKRGLEV 329 (402)
T ss_dssp ECCSSCCSEEEECCGGGSCG
T ss_pred cccCCcccceEEecccccce
Confidence 2 35566666666666554
No 77
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.6e-14 Score=162.91 Aligned_cols=203 Identities=12% Similarity=-0.029 Sum_probs=137.5
Q ss_pred CCCEEEEcC-CCCeEEEEecCchhhhhhcccCCceEEEEcCCC----Ccee-EEE-ecCCCCCeEEEeecCCCe-EEEEE
Q 003205 34 SRNKVACAP-FGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG----VLIS-ETV-WKNPGGRLIGMSWSEDQT-LICVV 105 (839)
Q Consensus 34 ~~~~va~sp-~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G----~ll~-ti~-~~~~~~~I~~~~fs~de~-Lv~v~ 105 (839)
....++++| +|..+|+.+ .|++|+||+... .... ... .|. +.|.++.|+|++. |++++
T Consensus 65 ~V~~~~~s~~~~~~l~s~s------------~dg~v~vwd~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~s 130 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGS------------DQGVIKIWNLKEIIVGEVYSSSLTYDCS--STVTQITMIPNFDAFAVSS 130 (437)
T ss_dssp CEEEEEEECSSSCEEEEEE------------TTSEEEEEEHHHHHTTCCCSCSEEEECS--SCEEEEEECTTSSEEEEEE
T ss_pred ceEEEEECCCCCCEEEEec------------CCceEEEeECcccccCcccceeeeccCC--CCEEEEEEeCCCCEEEEEe
Confidence 556899999 999999987 589999999643 3121 222 356 8999999999887 68999
Q ss_pred eCCeEEEEeC----CCCccccCCCCCccc-------cccCeEEEEE--ECCeEEEEecCC-eEEEEecCCCce-EEEcCC
Q 003205 106 QDGTVYRYNI----HAELIEPNASMGKEC-------FEENVVECVF--WGNGVVCVTEAN-RYFCMADFATMK-VCELAR 170 (839)
Q Consensus 106 ~dGtv~l~~~----~G~~~~~~~g~~~~~-------~~~~V~~~~~--~~~G~v~~t~~~-~~~~v~~~~~~~-~~~l~~ 170 (839)
.||+|++|++ .|+...+..++.+.. ....+..+.+ .++|..+++++. ....+|++.... ...+..
T Consensus 131 ~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 210 (437)
T 3gre_A 131 KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN 210 (437)
T ss_dssp TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence 9999999987 565543332221000 0334555553 357777777543 345566665433 333332
Q ss_pred CCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----c-ccCCCceEE----EECCCCcEEEEeecCCeE
Q 003205 171 PEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----K-VDDTLSQKM----AVSPNGNFVACFTHDGRL 240 (839)
Q Consensus 171 ~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~-~~~~~i~~i----a~Spng~~iA~~~~~g~i 240 (839)
++ +.....++ .|+|++..++..+.|++|++||..... . .+..+|..+ ++||+|+++|+++.||+|
T Consensus 211 ~~--h~~~v~~~---~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i 285 (437)
T 3gre_A 211 SP--RHGAVSSI---CIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFL 285 (437)
T ss_dssp CG--GGCCEEEE---EECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEE
T ss_pred CC--CCCceEEE---EECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcE
Confidence 10 11122233 467799999999999999999987543 2 456689999 556679999999999999
Q ss_pred EEEecCCCCcccccc
Q 003205 241 VVNNTNFSSPVIDES 255 (839)
Q Consensus 241 ~i~ssd~~~~l~e~~ 255 (839)
.+|+..-.+.+..+.
T Consensus 286 ~iwd~~~~~~~~~~~ 300 (437)
T 3gre_A 286 TIWNFVKGHCQYAFI 300 (437)
T ss_dssp EEEETTTTEEEEEEE
T ss_pred EEEEcCCCcEEEEEE
Confidence 999876555444443
No 78
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.59 E-value=1.8e-13 Score=154.84 Aligned_cols=253 Identities=12% Similarity=0.071 Sum_probs=175.5
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEe
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYN 114 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~ 114 (839)
...+++++|+.+|+.. .+++|++|+. .|+.+.++..|. +.|.++.| .+..|++++.||+|++|+
T Consensus 135 ~v~~~~~d~~~l~~g~------------~dg~i~iwd~~~~~~~~~~~~h~--~~v~~l~~-~~~~l~sg~~dg~i~vwd 199 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGL------------RDNTIKIWDKNTLECKRILTGHT--GSVLCLQY-DERVIITGSSDSTVRVWD 199 (435)
T ss_dssp CEEEEECCSSEEEEEE------------SSSCEEEEESSSCCEEEEECCCS--SCEEEEEC-CSSEEEEEETTSCEEEEE
T ss_pred cEEEEEECCCEEEEEe------------CCCeEEEEeCCCCeEEEEEcCCC--CcEEEEEE-CCCEEEEEcCCCeEEEEE
Confidence 4678888999999886 5899999994 688999999998 99999999 344578999999999999
Q ss_pred C-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCceE----EEcCCCCCCCCCceEEEeCCCCCC
Q 003205 115 I-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKV----CELARPEVEELPHCVAVIEPKYTM 189 (839)
Q Consensus 115 ~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~~----~~l~~~~~~~~~~~w~vi~~~~S~ 189 (839)
+ .|+......+| ...|..+.+.++-++..+.++.+. ++++..+.. ..+.. +.....++ ..
T Consensus 200 ~~~~~~~~~~~~h-----~~~v~~l~~~~~~l~s~s~dg~i~-vwd~~~~~~~~~~~~~~~----~~~~v~~~-~~---- 264 (435)
T 1p22_A 200 VNTGEMLNTLIHH-----CEAVLHLRFNNGMMVTCSKDRSIA-VWDMASPTDITLRRVLVG----HRAAVNVV-DF---- 264 (435)
T ss_dssp SSSCCEEEEECCC-----CSCEEEEECCTTEEEEEETTSCEE-EEECSSSSCCEEEEEECC----CSSCEEEE-EE----
T ss_pred CCCCcEEEEEcCC-----CCcEEEEEEcCCEEEEeeCCCcEE-EEeCCCCCCceeeeEecC----CCCcEEEE-Ee----
Confidence 6 47766666677 667888887665444444455544 555543321 12211 22222222 21
Q ss_pred CCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCc
Q 003205 190 TGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQ 264 (839)
Q Consensus 190 ~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~ 264 (839)
+++.++.++.|++|++||..... ..+.+++..+++ +|+++++++.||+|.+|+..-.+.+.++..+ ...+..
T Consensus 265 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~ 341 (435)
T 1p22_A 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH-EELVRC 341 (435)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEE
T ss_pred CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCC-cCcEEE
Confidence 78899999999999999987543 467788888887 5779999999999999998767777677655 334555
Q ss_pred eeee-------cCceEEEEecC--------------EEEEEcCCCCceEeccCCCeEEeecCCc-eEEEccCcceeeec
Q 003205 265 IAWC-------GMDSVLLYWND--------------MLVMVAPQAEPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQR 321 (839)
Q Consensus 265 ~~Wc-------G~d~vv~~~~~--------------~l~lig~~~~~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~ 321 (839)
+.|. +.|..+..|+- ...+.|+.+.-....+++..+++...|| |+||.-....-.+.
T Consensus 342 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 420 (435)
T 1p22_A 342 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAQA 420 (435)
T ss_dssp EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC---------
T ss_pred EEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCCCccc
Confidence 5553 46677777751 2345566665333333888889999999 99999875544433
No 79
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.59 E-value=4.5e-14 Score=153.75 Aligned_cols=267 Identities=12% Similarity=0.103 Sum_probs=185.7
Q ss_pred CCCCEEEEcCC---CCeEEEEecCchhhhhhcccCCceEEEEcCC--CCce-eEEEecCCCCCeEEEeecCCCe-EEEEE
Q 003205 33 LSRNKVACAPF---GGPIAVIRDDSKIVQLYAESALRKLRIFNSA--GVLI-SETVWKNPGGRLIGMSWSEDQT-LICVV 105 (839)
Q Consensus 33 l~~~~va~sp~---Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~--G~ll-~ti~~~~~~~~I~~~~fs~de~-Lv~v~ 105 (839)
-....++++|+ |..+|+.. .++.|+||+.. |..+ ..+..|. +.|.++.|+|+++ |++++
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~------------~dg~i~iw~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGS------------WANDVRCWEVQDSGQTIPKAQQMHT--GPVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEE------------TTSEEEEEEECTTSCEEEEEEEECS--SCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEEcCCCCCceEEEEEC------------CCCcEEEEEcCCCCceeEEEecccc--CCEEEEEECcCCCEEEEEc
Confidence 35679999999 58888876 58999999976 6666 6788888 9999999999987 68999
Q ss_pred eCCeEEEEeCCCCccccCCCCCccccccCeEEEEE--ECCeEEEEecCC-eEEEEecCCCce-EEEcCCCCCCCCCceEE
Q 003205 106 QDGTVYRYNIHAELIEPNASMGKECFEENVVECVF--WGNGVVCVTEAN-RYFCMADFATMK-VCELARPEVEELPHCVA 181 (839)
Q Consensus 106 ~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~--~~~G~v~~t~~~-~~~~v~~~~~~~-~~~l~~~~~~~~~~~w~ 181 (839)
.||+|++|++.........+| ...|..+.+ .++|..+++.+. ....+|++.... ...+.. ...+.+
T Consensus 106 ~dg~v~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~~ 175 (368)
T 3mmy_A 106 CDKTAKMWDLSSNQAIQIAQH-----DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL-----PERCYC 175 (368)
T ss_dssp TTSEEEEEETTTTEEEEEEEC-----SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEEC-----SSCEEE
T ss_pred CCCcEEEEEcCCCCceeeccc-----cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEec-----CCCceE
Confidence 999999999765543335556 677999998 788877777543 345566665432 222221 122232
Q ss_pred EeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-------cccCCCceEEEECCCCcE----EEEeecCCeEEEEecCCCC-
Q 003205 182 VIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-------KVDDTLSQKMAVSPNGNF----VACFTHDGRLVVNNTNFSS- 249 (839)
Q Consensus 182 vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-------~~~~~~i~~ia~Spng~~----iA~~~~~g~i~i~ssd~~~- 249 (839)
+.. .+...+..+.++++.+|+..... .........+++++++.. +|+++.+|++.+|+.+...
T Consensus 176 ~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~ 250 (368)
T 3mmy_A 176 ADV-----IYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP 250 (368)
T ss_dssp EEE-----ETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH
T ss_pred EEe-----cCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc
Confidence 211 34577888889999999988653 233455667777776655 9999999999999876432
Q ss_pred --ccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCC--CceEeccCCCeEEeecCCc-eEEEccCcceeeeccch
Q 003205 250 --PVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQA--EPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPA 324 (839)
Q Consensus 250 --~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~--~~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~ 324 (839)
.+..+..+... ... ....++.. ..+.|.+++..+++...|| |+||+....+.++.++.
T Consensus 251 ~~~~~~~~~~~~~-~~~----------------~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (368)
T 3mmy_A 251 AKDNFTFKCHRSN-GTN----------------TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ 313 (368)
T ss_dssp HHHSEEEECSEEC---------------------CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred cccceeeeeeecc-ccc----------------ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC
Confidence 22222222100 000 00000111 1567777888888899998 99999999999999999
Q ss_pred hhHhhhccCCCChhhhHHHHH
Q 003205 325 STEQIFAIGSTSPAALLYDAL 345 (839)
Q Consensus 325 ~~~~vf~igS~~pga~L~~A~ 345 (839)
+...|..+..++.|.+|+.+.
T Consensus 314 ~~~~v~~~~~s~~g~~l~~~s 334 (368)
T 3mmy_A 314 LDQPISACCFNHNGNIFAYAS 334 (368)
T ss_dssp CSSCEEEEEECTTSSCEEEEE
T ss_pred CCCCceEEEECCCCCeEEEEe
Confidence 888888888888887777654
No 80
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.59 E-value=8.5e-14 Score=163.32 Aligned_cols=270 Identities=13% Similarity=0.113 Sum_probs=189.8
Q ss_pred CCEEEEcC--CCCeEEEEecCchhhhhhcccCCceEEEEcC-CC--------CceeEEEecCCCCCeEEEeecCCCe-EE
Q 003205 35 RNKVACAP--FGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AG--------VLISETVWKNPGGRLIGMSWSEDQT-LI 102 (839)
Q Consensus 35 ~~~va~sp--~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G--------~ll~ti~~~~~~~~I~~~~fs~de~-Lv 102 (839)
...++++| +|..+|+.. .+++|+||+. +| +++.++..+. +.|.++.|+|+++ |+
T Consensus 67 v~~~~~sp~~~~~~l~s~~------------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~ 132 (615)
T 1pgu_A 67 VTTVKFSPIKGSQYLCSGD------------ESGKVIVWGWTFDKESNSVEVNVKSEFQVLA--GPISDISWDFEGRRLC 132 (615)
T ss_dssp EEEEEECSSTTCCEEEEEE------------TTSEEEEEEEEEEGGGTEEEEEEEEEEECCS--SCEEEEEECTTSSEEE
T ss_pred EEEEEECcCCCCCEEEEec------------CCCEEEEEeCCCCcccccccccccchhhccc--ccEEEEEEeCCCCEEE
Confidence 56899999 999999986 5899999998 34 7888888887 9999999999998 46
Q ss_pred EEEeC----CeEEEEeCCCCccccCCCCCccccccCeEEEEEECCeE-EEEec-CCeEEEEecCCCce-EEEcCCCCCCC
Q 003205 103 CVVQD----GTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGV-VCVTE-ANRYFCMADFATMK-VCELARPEVEE 175 (839)
Q Consensus 103 ~v~~d----Gtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~-v~~t~-~~~~~~v~~~~~~~-~~~l~~~~~~~ 175 (839)
+++.+ |.|++|+ .|+......+| ...|..+.|+++|- .+++. ......+|+..... ...+.. .
T Consensus 133 ~~~~~~~~~~~v~~~d-~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~----~ 202 (615)
T 1pgu_A 133 VVGEGRDNFGVFISWD-SGNSLGEVSGH-----SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT----H 202 (615)
T ss_dssp EEECCSSCSEEEEETT-TCCEEEECCSC-----SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS----S
T ss_pred EeccCCCCccEEEEEE-CCCcceeeecC-----CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecc----c
Confidence 77776 7999999 56665666677 67899999999884 44443 33344566665433 233321 1
Q ss_pred CC---ceEEEeCCCCCCC-CcEEEEEEeCCeEEEEecCCcc----c-----ccCCCceEEEECCCCcEEEEeecCCeEEE
Q 003205 176 LP---HCVAVIEPKYTMT-GSVEVLIGTDAGILMLDEDGVQ----K-----VDDTLSQKMAVSPNGNFVACFTHDGRLVV 242 (839)
Q Consensus 176 ~~---~~w~vi~~~~S~~-~~~~v~~s~d~tv~l~~~~~~~----~-----~~~~~i~~ia~Spng~~iA~~~~~g~i~i 242 (839)
.. ..+++ .|+|+ |+.++..+.|++|++|+..... . .+.++|..+++| +|+++++.+.||+|.+
T Consensus 203 ~~~~~~v~~~---~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~ 278 (615)
T 1pgu_A 203 HKQGSFVRDV---EFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRV 278 (615)
T ss_dssp SCTTCCEEEE---EECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEE
T ss_pred CCCCceEEEE---EECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEE
Confidence 12 33344 56679 9999999999999999976432 2 678899999999 9999999999999999
Q ss_pred EecCCCCccccccCCC---CCCCCceeee--------cCceEEEEecC-----EEEEEcCCCC--ceEeccCCCeEEeec
Q 003205 243 NNTNFSSPVIDESCES---ALPPEQIAWC--------GMDSVLLYWND-----MLVMVAPQAE--PVQYFYDEPLVLIPE 304 (839)
Q Consensus 243 ~ssd~~~~l~e~~~~~---~~~p~~~~Wc--------G~d~vv~~~~~-----~l~lig~~~~--~v~f~~~~~~~l~~E 304 (839)
|+..-.+.+..+..+. ...+..+.|. +.|..+..|+- ...+.|+.+. .+.| ++ +++..
T Consensus 279 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~ 354 (615)
T 1pgu_A 279 WDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGS 354 (615)
T ss_dssp EETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEE
T ss_pred EECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEEC
Confidence 9977566665555431 1233445553 44555566652 2344555554 5556 44 77778
Q ss_pred CCc-eEEEccCcceeeeccchhhHhhhccCCCChhhhHH
Q 003205 305 CDG-VRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLY 342 (839)
Q Consensus 305 ~DG-vRIit~~~~~~l~~Vp~~~~~vf~igS~~pga~L~ 342 (839)
.|| |++|... -++ +.+...|..+.. +|+..|+
T Consensus 355 ~dg~i~~w~~~---~~~--~~~~~~v~~~~~-~~~~~l~ 387 (615)
T 1pgu_A 355 YDGRIMEWSSS---SMH--QDHSNLIVSLDN-SKAQEYS 387 (615)
T ss_dssp TTSCEEETTTT---EEE--CCCCSCEEEEEC-CSTTCCE
T ss_pred CCCeEEEEEch---hhc--CcccCceEEEEE-CCCcEEE
Confidence 888 9999987 223 555556666665 4454444
No 81
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.57 E-value=4e-14 Score=160.99 Aligned_cols=199 Identities=6% Similarity=0.045 Sum_probs=140.1
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCC---ceeEEEecCC-----------------------
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGV---LISETVWKNP----------------------- 86 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~---ll~ti~~~~~----------------------- 86 (839)
....++++|+|..++... ++.|++|+ .+|+ .+.++..+..
T Consensus 6 p~~~v~~s~dg~~l~~~~-------------~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAII-------------KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENE 72 (450)
T ss_dssp CCCEEEECSSSSEEEEEE-------------TTEEEEEEEETTTEEEEEEEEECCC------------------------
T ss_pred cEEEEEecCCCCEEEEEe-------------CCeEEEEECCCCCcceeeeecCCccccccccccccchhhcccccccccc
Confidence 345889999999777764 57899999 6888 7777764320
Q ss_pred -----------------------------CCCeEEEeecCCCeE--EEEEeCCeEEEEeCC---CCccccCC--CCCccc
Q 003205 87 -----------------------------GGRLIGMSWSEDQTL--ICVVQDGTVYRYNIH---AELIEPNA--SMGKEC 130 (839)
Q Consensus 87 -----------------------------~~~I~~~~fs~de~L--v~v~~dGtv~l~~~~---G~~~~~~~--g~~~~~ 130 (839)
.+.|.++.|+|++.. ++++.||+|++|++. |+...... ++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~---- 148 (450)
T 2vdu_B 73 NKKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCF---- 148 (450)
T ss_dssp ---------------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEEC----
T ss_pred ccccccCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccC----
Confidence 026999999999974 567789999999865 55544332 33
Q ss_pred cccCeEEEEEECCeEEEEec--CCeEEEEecCCCceEEE-cCCCCCCCCCceEEEeCCCCCCC---CcEEEEEEeCCeEE
Q 003205 131 FEENVVECVFWGNGVVCVTE--ANRYFCMADFATMKVCE-LARPEVEELPHCVAVIEPKYTMT---GSVEVLIGTDAGIL 204 (839)
Q Consensus 131 ~~~~V~~~~~~~~G~v~~t~--~~~~~~v~~~~~~~~~~-l~~~~~~~~~~~w~vi~~~~S~~---~~~~v~~s~d~tv~ 204 (839)
...|..+.|+++|..++++ ++.++.+. +....... ......+.....+++ .|||+ +..++..+.|++|+
T Consensus 149 -~~~v~~~~~sp~~~~l~~~~~~g~v~~~~-~~~~~~~~~~~~~~~~h~~~v~~~---~~sp~~~~~~~l~s~~~d~~i~ 223 (450)
T 2vdu_B 149 -SKRPNAISIAEDDTTVIIADKFGDVYSID-INSIPEEKFTQEPILGHVSMLTDV---HLIKDSDGHQFIITSDRDEHIK 223 (450)
T ss_dssp -SSCEEEEEECTTSSEEEEEETTSEEEEEE-TTSCCCSSCCCCCSEECSSCEEEE---EEEECTTSCEEEEEEETTSCEE
T ss_pred -CCCceEEEEcCCCCEEEEEeCCCcEEEEe-cCCcccccccceeeecccCceEEE---EEcCCCCCCcEEEEEcCCCcEE
Confidence 4578899999988777665 35565443 33222110 000001122223333 56678 88999999999999
Q ss_pred EEecCCcc------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcccccc
Q 003205 205 MLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDES 255 (839)
Q Consensus 205 l~~~~~~~------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~ 255 (839)
+|+..... ..+.++|..++|| +|+++|+++.||+|.+|+..-++.+..+.
T Consensus 224 vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~ 279 (450)
T 2vdu_B 224 ISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFD 279 (450)
T ss_dssp EEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEE
T ss_pred EEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeec
Confidence 99987432 3578899999999 99999999999999999977666665554
No 82
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.57 E-value=1.3e-13 Score=152.63 Aligned_cols=255 Identities=11% Similarity=0.109 Sum_probs=169.5
Q ss_pred CCCceeEEEecCCCCCeEEEeecCCC-e-EEEEEeCCeEEEEeCCC-Ccccc--CCCCCccccccCeEEEEEEC-CeEEE
Q 003205 74 AGVLISETVWKNPGGRLIGMSWSEDQ-T-LICVVQDGTVYRYNIHA-ELIEP--NASMGKECFEENVVECVFWG-NGVVC 147 (839)
Q Consensus 74 ~G~ll~ti~~~~~~~~I~~~~fs~de-~-Lv~v~~dGtv~l~~~~G-~~~~~--~~g~~~~~~~~~V~~~~~~~-~G~v~ 147 (839)
..+++.++..|. +.|.++.|+|++ . |++++.||+|++|++.+ +.... ..+| ...|..+.+++ +|..+
T Consensus 62 ~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~l 134 (383)
T 3ei3_B 62 SYKLHRTASPFD--RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGP-----GDAITGMKFNQFNTNQL 134 (383)
T ss_dssp TCEEEEEECCCS--SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCST-----TCBEEEEEEETTEEEEE
T ss_pred ccceEEeccCCC--CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCc-----CCceeEEEeCCCCCCEE
Confidence 456777888888 999999999998 4 68999999999999763 43322 2356 67899999999 77777
Q ss_pred EecCC-eEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----cccCCCceEE
Q 003205 148 VTEAN-RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKM 222 (839)
Q Consensus 148 ~t~~~-~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----~~~~~~i~~i 222 (839)
++.+. ....+|++.+.....+..... .....+++ .|+|++..++..+.|++|++|+.++.. ..+.++|..+
T Consensus 135 ~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~v~~~---~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~ 210 (383)
T 3ei3_B 135 FVSSIRGATTLRDFSGSVIQVFAKTDS-WDYWYCCV---DVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHA 210 (383)
T ss_dssp EEEETTTEEEEEETTSCEEEEEECCCC-SSCCEEEE---EEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEE
T ss_pred EEEeCCCEEEEEECCCCceEEEeccCC-CCCCeEEE---EECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEE
Confidence 77643 345677777655555433110 11222333 466799999999999999999997654 5678999999
Q ss_pred EECCCCc-EEEEeecCCeEEEEecCC----CCccccccCCCCCCCCceeee----------cCceEEEEecC-----EEE
Q 003205 223 AVSPNGN-FVACFTHDGRLVVNNTNF----SSPVIDESCESALPPEQIAWC----------GMDSVLLYWND-----MLV 282 (839)
Q Consensus 223 a~Spng~-~iA~~~~~g~i~i~ssd~----~~~l~e~~~~~~~~p~~~~Wc----------G~d~vv~~~~~-----~l~ 282 (839)
++||+|+ ++|+++.||+|.+|+..- ...+..+. + ...+..+.|+ +.|..+..|+- ...
T Consensus 211 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~-~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 288 (383)
T 3ei3_B 211 EFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-H-EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQ 288 (383)
T ss_dssp EECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-C-SSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSE
T ss_pred EECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec-C-CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccc
Confidence 9999999 999999999999998653 23333231 2 2244455554 45555555642 123
Q ss_pred EEcCCCC--------c-----------eEeccCCCeEEeecCCc-eEEEccCcceeeeccchhh--HhhhccCCCChhhh
Q 003205 283 MVAPQAE--------P-----------VQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPAST--EQIFAIGSTSPAAL 340 (839)
Q Consensus 283 lig~~~~--------~-----------v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~~--~~vf~igS~~pga~ 340 (839)
+.++... . +.|++++.. +...|| |+||.....+.+..+..+. ..+..+..++.+.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~ 366 (383)
T 3ei3_B 289 IIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDV 366 (383)
T ss_dssp EEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSE
T ss_pred cccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccE
Confidence 3332210 1 333334433 445788 9999998899998887532 22222244445555
Q ss_pred HHH
Q 003205 341 LYD 343 (839)
Q Consensus 341 L~~ 343 (839)
|+.
T Consensus 367 l~s 369 (383)
T 3ei3_B 367 LAS 369 (383)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 83
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.56 E-value=6.6e-14 Score=170.29 Aligned_cols=235 Identities=13% Similarity=0.132 Sum_probs=163.5
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC---CCCceeEEEecCCCCCeEEEeecCC--Ce-EEEEEeC
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS---AGVLISETVWKNPGGRLIGMSWSED--QT-LICVVQD 107 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~---~G~ll~ti~~~~~~~~I~~~~fs~d--e~-Lv~v~~d 107 (839)
....++++|+|..+|+.. .+++|+||+. .|+.+.++..|. +.|.++.|+|+ +. |++++.|
T Consensus 11 ~V~~l~~s~dg~~latg~------------~dg~I~vwd~~~~~~~~~~~l~~h~--~~V~~l~~s~~~~~~~l~s~s~D 76 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCS------------SDKTIKIFEVEGETHKLIDTLTGHE--GPVWRVDWAHPKFGTILASCSYD 76 (753)
T ss_dssp CEEEECCCSSSCCEEEEE------------TTTEEEEEEEETTEEEEEEEECCCS--SCEEEEEECCTTSCSEEEEEETT
T ss_pred eeEEEEECCCCCeEEEEE------------CCCcEEEEecCCCCCccceeccCCc--CceEEEEecCCCCCCEEEEEeCC
Confidence 456788999999999986 5899999996 456788888888 99999999987 65 6899999
Q ss_pred CeEEEEeCCC-C--ccccCCCCCccccccCeEEEEEECC--eEEEEecCC-eEEEEecCCCc---eEEEcCCCCCCCCCc
Q 003205 108 GTVYRYNIHA-E--LIEPNASMGKECFEENVVECVFWGN--GVVCVTEAN-RYFCMADFATM---KVCELARPEVEELPH 178 (839)
Q Consensus 108 Gtv~l~~~~G-~--~~~~~~g~~~~~~~~~V~~~~~~~~--G~v~~t~~~-~~~~v~~~~~~---~~~~l~~~~~~~~~~ 178 (839)
|+|++|++.+ + ......+| ...|..+.++++ |..+++++. ....++++... ....+.. ....
T Consensus 77 g~I~vwd~~~~~~~~~~~~~~h-----~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~----~~~~ 147 (753)
T 3jro_A 77 GKVLIWKEENGRWSQIAVHAVH-----SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA----HAIG 147 (753)
T ss_dssp SCEEEEEEETTEEEEEEEECCC-----SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEEC----CSSC
T ss_pred CeEEEEECCCCcccccccccCC-----CCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeec----CCCc
Confidence 9999998654 3 34445566 678999999997 877776543 24455655533 1222211 2222
Q ss_pred eEEE-eCCC---------CCCCCcEEEEEEeCCeEEEEecCCcc---------cccCCCceEEEECCC---CcEEEEeec
Q 003205 179 CVAV-IEPK---------YTMTGSVEVLIGTDAGILMLDEDGVQ---------KVDDTLSQKMAVSPN---GNFVACFTH 236 (839)
Q Consensus 179 ~w~v-i~~~---------~S~~~~~~v~~s~d~tv~l~~~~~~~---------~~~~~~i~~ia~Spn---g~~iA~~~~ 236 (839)
..++ ..|. .++++..++..+.||+|++|+..+.. ..|.++|..+++||+ |+++|+++.
T Consensus 148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~ 227 (753)
T 3jro_A 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 227 (753)
T ss_dssp EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES
T ss_pred eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec
Confidence 2333 2221 12268899999999999999876431 467889999999999 999999999
Q ss_pred CCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCC--CceEeccCCCeEEeecCCc-eEEEcc
Q 003205 237 DGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQA--EPVQYFYDEPLVLIPECDG-VRILSN 313 (839)
Q Consensus 237 ~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~--~~v~f~~~~~~~l~~E~DG-vRIit~ 313 (839)
||+|.+|+....+......... . .++.+ ..+.|.+++..++++..|| |+||..
T Consensus 228 Dg~I~iwd~~~~~~~~~~~~~~--------~----------------~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 228 DRTCIIWTQDNEQGPWKKTLLK--------E----------------EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (753)
T ss_dssp SSCEEEEEESSSSSCCBCCBSS--------S----------------SCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred CCEEEEecCCCCCCcceeEEec--------c----------------CCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence 9999999865332110000000 0 00111 1456667777778888888 999987
Q ss_pred Cc
Q 003205 314 SS 315 (839)
Q Consensus 314 ~~ 315 (839)
+.
T Consensus 284 ~~ 285 (753)
T 3jro_A 284 NL 285 (753)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 84
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.56 E-value=2.6e-13 Score=163.31 Aligned_cols=195 Identities=18% Similarity=0.158 Sum_probs=145.6
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVY 111 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~ 111 (839)
....++++|+|..+|+.+ .|++|+||+. .|+.+.++..|. +.|.++.|+|++. |++++.||+|+
T Consensus 432 ~v~~v~~s~~g~~l~sgs------------~Dg~v~vwd~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~D~~i~ 497 (694)
T 3dm0_A 432 FVEDVVLSSDGQFALSGS------------WDGELRLWDLAAGVSTRRFVGHT--KDVLSVAFSLDNRQIVSASRDRTIK 497 (694)
T ss_dssp CEEEEEECTTSSEEEEEE------------TTSEEEEEETTTTEEEEEEECCS--SCEEEEEECTTSSCEEEEETTSCEE
T ss_pred cEEEEEECCCCCEEEEEe------------CCCcEEEEECCCCcceeEEeCCC--CCEEEEEEeCCCCEEEEEeCCCEEE
Confidence 445789999999999886 5899999994 788899999998 9999999999986 78999999999
Q ss_pred EEeCCCCcc-c---cCCCCCccccccCeEEEEEECCe--EEEEecC-CeEEEEecCCCceE-EEcCCCCCCCCCceEEEe
Q 003205 112 RYNIHAELI-E---PNASMGKECFEENVVECVFWGNG--VVCVTEA-NRYFCMADFATMKV-CELARPEVEELPHCVAVI 183 (839)
Q Consensus 112 l~~~~G~~~-~---~~~g~~~~~~~~~V~~~~~~~~G--~v~~t~~-~~~~~v~~~~~~~~-~~l~~~~~~~~~~~w~vi 183 (839)
+|+..+... . ...+| ...|..+.|+++| ..+++++ .....+|++..... ..+.. +....+++
T Consensus 498 iwd~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~----h~~~v~~v- 567 (694)
T 3dm0_A 498 LWNTLGECKYTISEGGEGH-----RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG----HTGYVSTV- 567 (694)
T ss_dssp EECTTSCEEEEECSSTTSC-----SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC----CSSCEEEE-
T ss_pred EEECCCCcceeeccCCCCC-----CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC----CCCCEEEE-
Confidence 999876642 2 12345 5678999999876 3444443 23445676664433 23321 23333444
Q ss_pred CCCCCCCCcEEEEEEeCCeEEEEecCCcc----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcccccc
Q 003205 184 EPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDES 255 (839)
Q Consensus 184 ~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~ 255 (839)
.|||+|+.++..+.|++|++||..... .....++..++|||+|.+++..+ ++.|+||+..-.+.+.++.
T Consensus 568 --~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~ 640 (694)
T 3dm0_A 568 --AVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLK 640 (694)
T ss_dssp --EECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEC
T ss_pred --EEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhc
Confidence 567799999999999999999987543 33456799999999999988866 5669999877555554443
No 85
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.56 E-value=5.6e-13 Score=145.03 Aligned_cols=213 Identities=10% Similarity=0.073 Sum_probs=147.8
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEee--cCCCe-EEEEEeCCeE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSW--SEDQT-LICVVQDGTV 110 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~f--s~de~-Lv~v~~dGtv 110 (839)
....++++|+|..||+.. .+++|++|+........+..|. +.|.++.| ++++. +++++.||+|
T Consensus 88 ~v~~~~~~~~~~~l~s~~------------~dg~v~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~dg~i 153 (368)
T 3mmy_A 88 PVLDVCWSDDGSKVFTAS------------CDKTAKMWDLSSNQAIQIAQHD--APVKTIHWIKAPNYSCVMTGSWDKTL 153 (368)
T ss_dssp CEEEEEECTTSSEEEEEE------------TTSEEEEEETTTTEEEEEEECS--SCEEEEEEEECSSCEEEEEEETTSEE
T ss_pred CEEEEEECcCCCEEEEEc------------CCCcEEEEEcCCCCceeecccc--CceEEEEEEeCCCCCEEEEccCCCcE
Confidence 456789999999999886 5899999997666666677777 99999999 89987 6899999999
Q ss_pred EEEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCC-CceEEEcCCCCCCCCCceEEEeC-CCC
Q 003205 111 YRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFA-TMKVCELARPEVEELPHCVAVIE-PKY 187 (839)
Q Consensus 111 ~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~-~~~~~~l~~~~~~~~~~~w~vi~-~~~ 187 (839)
++|++ .|+....... ...+..+.+.++.+++.+.++.+..++ +. .+...............+..+.. +.+
T Consensus 154 ~vwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (368)
T 3mmy_A 154 KFWDTRSSNPMMVLQL------PERCYCADVIYPMAVVATAERGLIVYQ-LENQPSEFRRIESPLKHQHRCVAIFKDKQN 226 (368)
T ss_dssp EEECSSCSSCSEEEEC------SSCEEEEEEETTEEEEEEGGGCEEEEE-CSSSCEEEEECCCSCSSCEEEEEEEECTTS
T ss_pred EEEECCCCcEEEEEec------CCCceEEEecCCeeEEEeCCCcEEEEE-eccccchhhhccccccCCCceEEEcccCCC
Confidence 99996 4554433332 335677788888888888877765433 33 22222222212223344554432 222
Q ss_pred CCCCcEEEEEEeCCeEEEEecCCcc--------cccCC------------CceEEEECCCCcEEEEeecCCeEEEEecCC
Q 003205 188 TMTGSVEVLIGTDAGILMLDEDGVQ--------KVDDT------------LSQKMAVSPNGNFVACFTHDGRLVVNNTNF 247 (839)
Q Consensus 188 S~~~~~~v~~s~d~tv~l~~~~~~~--------~~~~~------------~i~~ia~Spng~~iA~~~~~g~i~i~ssd~ 247 (839)
+++ .++..+.|++|.+|+..... ..+.. +|..+++||+|+++|+++.||+|.+|+..-
T Consensus 227 ~~~--~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 227 KPT--GFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA 304 (368)
T ss_dssp CEE--EEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred CCC--eEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence 332 37888889999999988542 22322 799999999999999999999999999775
Q ss_pred CCccccccCCCCCCCCceeeecC
Q 003205 248 SSPVIDESCESALPPEQIAWCGM 270 (839)
Q Consensus 248 ~~~l~e~~~~~~~~p~~~~WcG~ 270 (839)
.+.+.++..+ ...+..++|+.+
T Consensus 305 ~~~~~~~~~~-~~~v~~~~~s~~ 326 (368)
T 3mmy_A 305 RTKLKTSEQL-DQPISACCFNHN 326 (368)
T ss_dssp TEEEEECCCC-SSCEEEEEECTT
T ss_pred CcEEEEecCC-CCCceEEEECCC
Confidence 6666555544 234555555543
No 86
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.55 E-value=7e-14 Score=151.38 Aligned_cols=202 Identities=10% Similarity=0.044 Sum_probs=128.3
Q ss_pred CCCEEEEcCC----CCeEEEEecCchhhhhh--------cccCCceEEEEc--CCCCceeEEEecCCCCCeEEEeecC--
Q 003205 34 SRNKVACAPF----GGPIAVIRDDSKIVQLY--------AESALRKLRIFN--SAGVLISETVWKNPGGRLIGMSWSE-- 97 (839)
Q Consensus 34 ~~~~va~sp~----Gg~IA~~~d~~k~~~~~--------~~~~~~~I~iy~--~~G~ll~ti~~~~~~~~I~~~~fs~-- 97 (839)
....+|+||+ |..+|..++..++..+. ....+++|++|+ .+|+.+.++..|. ..+..+.|++
T Consensus 113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~--~~v~~l~fs~~~ 190 (356)
T 2w18_A 113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP--PEETILTFAEVQ 190 (356)
T ss_dssp EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC--CSSCEEEEEEEE
T ss_pred ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCC--CceeeEEeeccC
Confidence 3458899999 99998876533222111 112499999999 4699999999998 5544555555
Q ss_pred -CCe-EEEEEeCCeEEEEeCC-CCccccCCCCCccccccCeEEEEEECCeEEEEecCC-------------eEEEEecCC
Q 003205 98 -DQT-LICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-------------RYFCMADFA 161 (839)
Q Consensus 98 -de~-Lv~v~~dGtv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-------------~~~~v~~~~ 161 (839)
+++ |++.+.|+|||+||+. |+...+..+|... ...|..+.|+|+|..+++.+. ..+.++|..
T Consensus 191 g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~--v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~ 268 (356)
T 2w18_A 191 GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY--QASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPK 268 (356)
T ss_dssp TSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-----CCCEEEEEEETTEEEEEEC------------CCEEEEEEETT
T ss_pred CCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc--eeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECC
Confidence 444 6899999999999975 8886665554211 345777889999998865331 233445554
Q ss_pred CceEEE-cC-CCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCC-ceEEEECCCCcEEEE
Q 003205 162 TMKVCE-LA-RPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTL-SQKMAVSPNGNFVAC 233 (839)
Q Consensus 162 ~~~~~~-l~-~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~-i~~ia~Spng~~iA~ 233 (839)
+.+... +. ..+.++... +++. +.++...+..+.|++|++||..... .+|... +..++|||||++||+
T Consensus 269 tgk~l~v~~~~~p~Gh~~~---~lsg--~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaS 343 (356)
T 2w18_A 269 TTLSVGVMLYCLPPGQAGR---FLEG--DVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLA 343 (356)
T ss_dssp TTEEEEEEEECCCTTCCCC---EEEE--EEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEE
T ss_pred CCEEEEEEEeeccCCCcce---eEcc--ccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEE
Confidence 433211 10 000011111 1111 1135577888889999999988543 345554 446999999999999
Q ss_pred eecCCeEEEEe
Q 003205 234 FTHDGRLVVNN 244 (839)
Q Consensus 234 ~~~~g~i~i~s 244 (839)
++.||+|+||+
T Consensus 344 GS~D~TIklWd 354 (356)
T 2w18_A 344 GQKDGNIFVYH 354 (356)
T ss_dssp ECTTSCEEEEE
T ss_pred EECCCcEEEec
Confidence 99999999996
No 87
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.54 E-value=4.2e-13 Score=166.30 Aligned_cols=195 Identities=9% Similarity=0.046 Sum_probs=137.9
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEE
Q 003205 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYR 112 (839)
Q Consensus 33 l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l 112 (839)
-....+|++|+|..+|+.. .+++|+||+..+.......-+. +.|.++.|+|+..|++++.||+|++
T Consensus 18 ~~V~~lafspdg~~lAsgs------------~Dg~I~lw~~~~~~~~~~~~~~--~~V~~l~fspg~~L~S~s~D~~v~l 83 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIAT------------VTGEVHIYGQQQVEVVIKLEDR--SAIKEMRFVKGIYLVVINAKDTVYV 83 (902)
T ss_dssp SCEEEEEEETTTTEEEEEE------------TTSEEEEECSTTCEEEEECSSC--CCEEEEEEETTTEEEEEETTCEEEE
T ss_pred CCcEEEEECCCCCEEEEEe------------CCCEEEEEeCCCcEEEEEcCCC--CCEEEEEEcCCCEEEEEECcCeEEE
Confidence 3566899999999999987 5899999998765543332345 7899999999334899999999999
Q ss_pred EeCC-CCccccCCCCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCceEEEcC--------CCCCCCCCceEEE
Q 003205 113 YNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMKVCELA--------RPEVEELPHCVAV 182 (839)
Q Consensus 113 ~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~~~~l~--------~~~~~~~~~~w~v 182 (839)
||+. |+..... .+ ...|..+.|+++|..+++++.+ .+.+|++.+.....+. ....++....+++
T Consensus 84 Wd~~~~~~~~~~-~~-----~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl 157 (902)
T 2oaj_A 84 LSLYSQKVLTTV-FV-----PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSI 157 (902)
T ss_dssp EETTTCSEEEEE-EC-----SSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEE
T ss_pred EECCCCcEEEEE-cC-----CCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEE
Confidence 9974 5553322 24 4578999999998888876432 3456777654432110 0001112222333
Q ss_pred eCCCCCCC-CcEEEEEEeCCeEEEEecCCcc-----ccc------------------CCCceEEEECCCCcEEEEeecCC
Q 003205 183 IEPKYTMT-GSVEVLIGTDAGILMLDEDGVQ-----KVD------------------DTLSQKMAVSPNGNFVACFTHDG 238 (839)
Q Consensus 183 i~~~~S~~-~~~~v~~s~d~tv~l~~~~~~~-----~~~------------------~~~i~~ia~Spng~~iA~~~~~g 238 (839)
.|+|+ +..++..+.|++| +||..... ..+ ..+|..++|||||++||+++.||
T Consensus 158 ---~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg 233 (902)
T 2oaj_A 158 ---QWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDN 233 (902)
T ss_dssp ---EEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTC
T ss_pred ---EEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCC
Confidence 46665 4677777779999 99987543 112 36799999999999999999999
Q ss_pred eEEEEecCCCCcc
Q 003205 239 RLVVNNTNFSSPV 251 (839)
Q Consensus 239 ~i~i~ssd~~~~l 251 (839)
+|++|+..-++.+
T Consensus 234 ~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 234 SLVFWDANSGHMI 246 (902)
T ss_dssp CEEEEETTTCCEE
T ss_pred eEEEEECCCCcEE
Confidence 9999997655544
No 88
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.54 E-value=3.5e-13 Score=146.71 Aligned_cols=257 Identities=9% Similarity=0.058 Sum_probs=182.3
Q ss_pred CCCCceeE--EEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEE
Q 003205 73 SAGVLISE--TVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCV 148 (839)
Q Consensus 73 ~~G~ll~t--i~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~ 148 (839)
..|..+.. +..|. +.|.++.|+|++. |++++.||+|++|++ .|+......+| ...|..+.++++|..++
T Consensus 18 ~~G~~~~~~~l~~h~--~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~ 90 (369)
T 3zwl_B 18 FQGSHMKAIKLTGHE--RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGH-----TGTIWSIDVDCFTKYCV 90 (369)
T ss_dssp SSCCSEEEEEEECCS--SCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCC-----SSCEEEEEECTTSSEEE
T ss_pred EeccccccEEEEEee--ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhc-----CCcEEEEEEcCCCCEEE
Confidence 34555555 66676 8999999999997 578899999999985 56666666677 67899999999887777
Q ss_pred ecCC-eEEEEecCCCceE-EEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeC-----CeEEEEecCCcc---------
Q 003205 149 TEAN-RYFCMADFATMKV-CELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTD-----AGILMLDEDGVQ--------- 212 (839)
Q Consensus 149 t~~~-~~~~v~~~~~~~~-~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d-----~tv~l~~~~~~~--------- 212 (839)
+.+. ....+|++.+... ..+.. .....++ .|+|++..++..+.+ ++|.+|+.....
T Consensus 91 s~~~dg~i~iwd~~~~~~~~~~~~-----~~~v~~~---~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~ 162 (369)
T 3zwl_B 91 TGSADYSIKLWDVSNGQCVATWKS-----PVPVKRV---EFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS 162 (369)
T ss_dssp EEETTTEEEEEETTTCCEEEEEEC-----SSCEEEE---EECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC
T ss_pred EEeCCCeEEEEECCCCcEEEEeec-----CCCeEEE---EEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccc
Confidence 7543 2445666664432 22221 1122222 466799999999888 999999876431
Q ss_pred -------cccCC--CceEEEECCCCcEEEEeecCCeEEEEecCC-CCccccccCCCCCCCCceeee---------cCceE
Q 003205 213 -------KVDDT--LSQKMAVSPNGNFVACFTHDGRLVVNNTNF-SSPVIDESCESALPPEQIAWC---------GMDSV 273 (839)
Q Consensus 213 -------~~~~~--~i~~ia~Spng~~iA~~~~~g~i~i~ssd~-~~~l~e~~~~~~~~p~~~~Wc---------G~d~v 273 (839)
..+.+ .+..+++||+|+++|+++.+|+|.+|+..- .+.+..+..+ ...+..+.|. +.|..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~ 241 (369)
T 3zwl_B 163 EEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH-EKSISDMQFSPDLTYFITSSRDTN 241 (369)
T ss_dssp SSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECC-SSCEEEEEECTTSSEEEEEETTSE
T ss_pred cceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC-CCceeEEEECCCCCEEEEecCCce
Confidence 12233 899999999999999999999999999764 4445455444 3355666665 45566
Q ss_pred EEEecC----EEEEEcCCCC--ceEeccCCCeEEeecCCc---------------eEEEccCcceeeeccchhhHhhhcc
Q 003205 274 LLYWND----MLVMVAPQAE--PVQYFYDEPLVLIPECDG---------------VRILSNSSMEFLQRVPASTEQIFAI 332 (839)
Q Consensus 274 v~~~~~----~l~lig~~~~--~v~f~~~~~~~l~~E~DG---------------vRIit~~~~~~l~~Vp~~~~~vf~i 332 (839)
+..|+- .+..+.+... .+.|.+++..+++...|| +++|.....+.+..++.+...|..+
T Consensus 242 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~ 321 (369)
T 3zwl_B 242 SFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTV 321 (369)
T ss_dssp EEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEE
Confidence 666652 2333323332 677888888887777765 8999998899999998888888888
Q ss_pred CCCChhhhHHHHH
Q 003205 333 GSTSPAALLYDAL 345 (839)
Q Consensus 333 gS~~pga~L~~A~ 345 (839)
..++.+.+|+.+.
T Consensus 322 ~~s~~~~~l~s~~ 334 (369)
T 3zwl_B 322 AISPQGTSYASGG 334 (369)
T ss_dssp EECTTSSEEEEEE
T ss_pred EECCCCCEEEEEc
Confidence 7777777766543
No 89
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.3e-13 Score=148.72 Aligned_cols=247 Identities=7% Similarity=-0.044 Sum_probs=159.1
Q ss_pred EEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCCC
Q 003205 39 ACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHA 117 (839)
Q Consensus 39 a~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G 117 (839)
++.++|..+|+.+ .|++|++|+ .+|+.+.++. . +.|.++.|+|+ +++++.||+|++|+..+
T Consensus 43 ~~~~d~~~l~sg~------------~Dg~v~iwd~~~~~~~~~~~--~--~~v~~~~~~~~--~~s~s~D~~i~~w~~~~ 104 (343)
T 3lrv_A 43 SMYYDKWVCMCRC------------EDGALHFTQLKDSKTITTIT--T--PNPRTGGEHPA--IISRGPCNRLLLLYPGN 104 (343)
T ss_dssp SSSEEEEEEEEEE------------ETTEEEEEEESSSSCEEEEE--E--ECCCTTCCCCS--EEEECSTTEEEEEETTT
T ss_pred hhcCCCCEEEEEC------------CCCcEEEEECCCCcEEEEEe--c--CCceeeeeCCc--eEEecCCCeEEEEEccC
Confidence 3446777888876 589999999 5788898887 3 67788899998 99999999999998765
Q ss_pred Cc-----------cccCCCCCccccccCeEEEEEEC--CeEEEEecCCe-EEEEecCCCceEEEcCCCCCCCCCceEEEe
Q 003205 118 EL-----------IEPNASMGKECFEENVVECVFWG--NGVVCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAVI 183 (839)
Q Consensus 118 ~~-----------~~~~~g~~~~~~~~~V~~~~~~~--~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi 183 (839)
+. ..+..+| ...|..+.+++ +|..+++.+.+ .+.+|++.......+.......... ++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~--~~- 176 (343)
T 3lrv_A 105 QITILDSKTNKVLREIEVDS-----ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYS--SG- 176 (343)
T ss_dssp EEEEEETTTCCEEEEEECCC-----SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCC--EE-
T ss_pred ceEEeecCCcceeEEeecCC-----CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceE--EE-
Confidence 43 1223344 46699999999 88888876432 4456777655443332211111222 23
Q ss_pred CCCCCCCCcEEEEEEeCCeEEEEecCCcc------cc-cCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccC
Q 003205 184 EPKYTMTGSVEVLIGTDAGILMLDEDGVQ------KV-DDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESC 256 (839)
Q Consensus 184 ~~~~S~~~~~~v~~s~d~tv~l~~~~~~~------~~-~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~ 256 (839)
.|+|+|..++..+.|++|++||..... .. |.++|..|+|||+|+++|+++ +++|.+|+..-.+....+..
T Consensus 177 --~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~ 253 (343)
T 3lrv_A 177 --VLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT 253 (343)
T ss_dssp --EECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC
T ss_pred --EECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc
Confidence 456799999999999999999987543 34 789999999999999999999 55999998664444333322
Q ss_pred C--CCCCC--CceeeecCceEEEE--e-cCEEEEEcCCC---C-------ceEecc---CCCeEEeecCCc-eEEEccC
Q 003205 257 E--SALPP--EQIAWCGMDSVLLY--W-NDMLVMVAPQA---E-------PVQYFY---DEPLVLIPECDG-VRILSNS 314 (839)
Q Consensus 257 ~--~~~~p--~~~~WcG~d~vv~~--~-~~~l~lig~~~---~-------~v~f~~---~~~~~l~~E~DG-vRIit~~ 314 (839)
. ..... ..++|..+...++. - +..+.+..... . .+.|.. +...+++...|| ++++..+
T Consensus 254 ~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 254 YTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp CBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEEEEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred cccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEecCceeEecCccccccceeEEEecCCceEEEEec
Confidence 1 01111 13777644333332 2 33444442211 1 233444 444566666676 7766443
No 90
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.52 E-value=6.6e-13 Score=142.25 Aligned_cols=188 Identities=16% Similarity=0.135 Sum_probs=133.7
Q ss_pred CCCEEEEcC--CCCeEEEEecCchhhhhhcccCCceEEEEcCC-C--CceeEEEecCCCCCeEEEeecCC--Ce-EEEEE
Q 003205 34 SRNKVACAP--FGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-G--VLISETVWKNPGGRLIGMSWSED--QT-LICVV 105 (839)
Q Consensus 34 ~~~~va~sp--~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G--~ll~ti~~~~~~~~I~~~~fs~d--e~-Lv~v~ 105 (839)
....++++| +|..+|+.+ .|++|+||+.. | ..+.++..|. +.|.++.|+|+ +. |++++
T Consensus 55 ~V~~v~~s~~~~g~~l~s~s------------~D~~v~iWd~~~~~~~~~~~~~~h~--~~v~~v~~~p~~~g~~l~s~s 120 (297)
T 2pm7_B 55 PVWRVDWAHPKFGTILASCS------------YDGKVMIWKEENGRWSQIAVHAVHS--ASVNSVQWAPHEYGPMLLVAS 120 (297)
T ss_dssp CEEEEEECCGGGCSEEEEEE------------TTTEEEEEEBSSSCBCCCEEECCCS--SCEEEEEECCGGGCSEEEEEE
T ss_pred CeEEEEecCCCcCCEEEEEc------------CCCEEEEEEcCCCceEEEEEeecCC--CceeEEEeCcCCCCcEEEEEE
Confidence 445788876 488888886 68999999975 4 3566777787 89999999997 54 78999
Q ss_pred eCCeEEEEeCCCC--c-cccCCCCCccccccCeEEEEEECC-------------eEEEEecCC-eEEEEecCCCce----
Q 003205 106 QDGTVYRYNIHAE--L-IEPNASMGKECFEENVVECVFWGN-------------GVVCVTEAN-RYFCMADFATMK---- 164 (839)
Q Consensus 106 ~dGtv~l~~~~G~--~-~~~~~g~~~~~~~~~V~~~~~~~~-------------G~v~~t~~~-~~~~v~~~~~~~---- 164 (839)
.||+|++|++... . .....+| ...|..+.+.++ |..+++++. ....+|++....
T Consensus 121 ~d~~v~~wd~~~~~~~~~~~~~~h-----~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~ 195 (297)
T 2pm7_B 121 SDGKVSVVEFKENGTTSPIIIDAH-----AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 195 (297)
T ss_dssp TTSEEEEEEBCSSSCBCCEEEECC-----SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEE
T ss_pred CCCcEEEEEecCCCceeeeeeecc-----cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEE
Confidence 9999999987532 2 2334466 667899999886 345666532 223444443211
Q ss_pred -EEEcCCCCCCCCCceEEEeCCCCCCCC---cEEEEEEeCCeEEEEecCCcc----------cccCCCceEEEECCCCcE
Q 003205 165 -VCELARPEVEELPHCVAVIEPKYTMTG---SVEVLIGTDAGILMLDEDGVQ----------KVDDTLSQKMAVSPNGNF 230 (839)
Q Consensus 165 -~~~l~~~~~~~~~~~w~vi~~~~S~~~---~~~v~~s~d~tv~l~~~~~~~----------~~~~~~i~~ia~Spng~~ 230 (839)
...+.. +....+++ .|||++ ..++..+.|++|++|+.+... ..+.+++..++|||+|++
T Consensus 196 ~~~~l~~----H~~~V~~v---~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 268 (297)
T 2pm7_B 196 LESTLEG----HSDWVRDV---AWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV 268 (297)
T ss_dssp EEEEECC----CSSCEEEE---EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC
T ss_pred EEEEecC----CCCceEEE---EECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCE
Confidence 122221 22223334 567774 788999999999999976421 235678999999999999
Q ss_pred EEEeecCCeEEEEecCC
Q 003205 231 VACFTHDGRLVVNNTNF 247 (839)
Q Consensus 231 iA~~~~~g~i~i~ssd~ 247 (839)
||+++.||+|.||+.+.
T Consensus 269 las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 269 LALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEEETTSCEEEEEECT
T ss_pred EEEEcCCCcEEEEEECC
Confidence 99999999999998653
No 91
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.51 E-value=2.9e-13 Score=148.06 Aligned_cols=221 Identities=12% Similarity=0.065 Sum_probs=153.1
Q ss_pred EEecCCCCCeEEEeecCCCeE-EEEEeCCeEEEEeCCCC---ccccCCCCCccccccCeEEEEEECCeEEEEecCC-eEE
Q 003205 81 TVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNIHAE---LIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYF 155 (839)
Q Consensus 81 i~~~~~~~~I~~~~fs~de~L-v~v~~dGtv~l~~~~G~---~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~ 155 (839)
+.+|. +.|.++.|+|++++ ++++.||+|++|++.+. ......+| ...|..+.++++|-.+++.+. ...
T Consensus 4 ~~~~~--~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~~~~~dg~i 76 (372)
T 1k8k_C 4 HSFLV--EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH-----NGQVTGVDWAPDSNRIVTCGTDRNA 76 (372)
T ss_dssp EESCS--SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECC-----SSCEEEEEEETTTTEEEEEETTSCE
T ss_pred ecccC--CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCC-----CCcccEEEEeCCCCEEEEEcCCCeE
Confidence 34566 89999999999985 67779999999987544 44555567 678999999998877776543 223
Q ss_pred EEecCCCceEE-EcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc---------cccCCCceEEEEC
Q 003205 156 CMADFATMKVC-ELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---------KVDDTLSQKMAVS 225 (839)
Q Consensus 156 ~v~~~~~~~~~-~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~---------~~~~~~i~~ia~S 225 (839)
.+|++...... .+.. ........++ .|+|+++.++..+.|++|++|+.+... ..+..+|..++++
T Consensus 77 ~vwd~~~~~~~~~~~~--~~~~~~v~~~---~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 151 (372)
T 1k8k_C 77 YVWTLKGRTWKPTLVI--LRINRAARCV---RWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH 151 (372)
T ss_dssp EEEEEETTEEEEEEEC--CCCSSCEEEE---EECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred EEEECCCCeeeeeEEe--ecCCCceeEE---EECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEc
Confidence 44554433321 1111 0112222333 567799999999999999999877432 3467889999999
Q ss_pred CCCcEEEEeecCCeEEEEec------------------CCCCccccccCCCCCCCCceeee---------cCceEEEEec
Q 003205 226 PNGNFVACFTHDGRLVVNNT------------------NFSSPVIDESCESALPPEQIAWC---------GMDSVLLYWN 278 (839)
Q Consensus 226 png~~iA~~~~~g~i~i~ss------------------d~~~~l~e~~~~~~~~p~~~~Wc---------G~d~vv~~~~ 278 (839)
|+|+++|+++.||++.+|+. ...+.+..+..+ ...+..+.|. +.|..+..|+
T Consensus 152 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 230 (372)
T 1k8k_C 152 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS-CGWVHGVCFSANGSRVAWVSHDSTVCLAD 230 (372)
T ss_dssp TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC-SSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC-CCeEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 99999999999999999983 234555555443 2345566664 5566666775
Q ss_pred C-----EEEEEcCCCC--ceEeccCCCeEEeecCCc-eEEEccCc
Q 003205 279 D-----MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSNSS 315 (839)
Q Consensus 279 ~-----~l~lig~~~~--~v~f~~~~~~~l~~E~DG-vRIit~~~ 315 (839)
- ...+.++.+. .+.|.+++..++.+ .|| ++||....
T Consensus 231 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 231 ADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp GGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 2 2345555543 67888888877777 776 99999875
No 92
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.51 E-value=1.9e-12 Score=140.08 Aligned_cols=195 Identities=9% Similarity=-0.046 Sum_probs=143.7
Q ss_pred CCCEEEEcCCCC-eEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEe--cCCCCCeEEEeecCCCeEEEEEeCCe
Q 003205 34 SRNKVACAPFGG-PIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVW--KNPGGRLIGMSWSEDQTLICVVQDGT 109 (839)
Q Consensus 34 ~~~~va~sp~Gg-~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~--~~~~~~I~~~~fs~de~Lv~v~~dGt 109 (839)
....++++|+|. .+|+.. .++.|++|+. .+....++.. |. +.|.++.|+|+..+++++.||+
T Consensus 58 ~v~~~~~~~~~~~~l~~~~------------~dg~i~~wd~~~~~~~~~~~~~~~~--~~v~~l~~~~~~~l~s~~~d~~ 123 (342)
T 1yfq_A 58 PLLCCNFIDNTDLQIYVGT------------VQGEILKVDLIGSPSFQALTNNEAN--LGICRICKYGDDKLIAASWDGL 123 (342)
T ss_dssp CEEEEEEEESSSEEEEEEE------------TTSCEEEECSSSSSSEEECBSCCCC--SCEEEEEEETTTEEEEEETTSE
T ss_pred ceEEEEECCCCCcEEEEEc------------CCCeEEEEEeccCCceEeccccCCC--CceEEEEeCCCCEEEEEcCCCe
Confidence 456889999999 888886 5899999998 8888888888 77 8999999999445789999999
Q ss_pred EEEEeCC----------CCccccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCC-ce--EEEcCCCCCCCC
Q 003205 110 VYRYNIH----------AELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFAT-MK--VCELARPEVEEL 176 (839)
Q Consensus 110 v~l~~~~----------G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~-~~--~~~l~~~~~~~~ 176 (839)
|++|++. ++... .+.+ ...|..+.+.++|+++.+.++.+. ++++.. +. ...... + ..
T Consensus 124 i~iwd~~~~~~~~~~~~~~~~~-~~~~-----~~~v~~~~~~~~~l~~~~~d~~i~-i~d~~~~~~~~~~~~~~-~--~~ 193 (342)
T 1yfq_A 124 IEVIDPRNYGDGVIAVKNLNSN-NTKV-----KNKIFTMDTNSSRLIVGMNNSQVQ-WFRLPLCEDDNGTIEES-G--LK 193 (342)
T ss_dssp EEEECHHHHTTBCEEEEESCSS-SSSS-----CCCEEEEEECSSEEEEEESTTEEE-EEESSCCTTCCCEEEEC-S--CS
T ss_pred EEEEcccccccccccccCCeee-EEee-----CCceEEEEecCCcEEEEeCCCeEE-EEECCccccccceeeec-C--CC
Confidence 9999864 33322 2224 567899999999966666676665 444443 21 111111 0 11
Q ss_pred CceEEEeCCCCCC-CCcEEEEEEeCCeEEEEecCCc------c-----cccC---------CCceEEEECCCCcEEEEee
Q 003205 177 PHCVAVIEPKYTM-TGSVEVLIGTDAGILMLDEDGV------Q-----KVDD---------TLSQKMAVSPNGNFVACFT 235 (839)
Q Consensus 177 ~~~w~vi~~~~S~-~~~~~v~~s~d~tv~l~~~~~~------~-----~~~~---------~~i~~ia~Spng~~iA~~~ 235 (839)
....++ .|+| +++.++..+.|++|.+|+.+.. . ..+. ++|..+++||+|++||+++
T Consensus 194 ~~i~~i---~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 270 (342)
T 1yfq_A 194 YQIRDV---ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG 270 (342)
T ss_dssp SCEEEE---EECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE
T ss_pred CceeEE---EECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEec
Confidence 222222 6788 8999999999999999987643 2 2333 3899999999999999999
Q ss_pred cCCeEEEEecCCCCcccccc
Q 003205 236 HDGRLVVNNTNFSSPVIDES 255 (839)
Q Consensus 236 ~~g~i~i~ssd~~~~l~e~~ 255 (839)
.||+|.+|+..-.+.+.++.
T Consensus 271 ~dg~i~vwd~~~~~~~~~~~ 290 (342)
T 1yfq_A 271 SDGIISCWNLQTRKKIKNFA 290 (342)
T ss_dssp TTSCEEEEETTTTEEEEECC
T ss_pred CCceEEEEcCccHhHhhhhh
Confidence 99999999977555555543
No 93
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.50 E-value=6.4e-13 Score=150.26 Aligned_cols=242 Identities=13% Similarity=0.123 Sum_probs=159.6
Q ss_pred CCCEEEEcCC-CCeEEEEecCchhhhhhcccCCceEEEEcCC-----------CCceeEEEecCCCCCeEEEeecCCCe-
Q 003205 34 SRNKVACAPF-GGPIAVIRDDSKIVQLYAESALRKLRIFNSA-----------GVLISETVWKNPGGRLIGMSWSEDQT- 100 (839)
Q Consensus 34 ~~~~va~sp~-Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-----------G~ll~ti~~~~~~~~I~~~~fs~de~- 100 (839)
....++++|+ |..+|+.. .++.|+||+.. ++++.++..|. +.|.++.|+|++.
T Consensus 130 ~v~~l~~~p~~~~~lat~~------------~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~~~ 195 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKT------------PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ--KEGYGLSWNPNLNG 195 (430)
T ss_dssp CCSEEEEETTEEEEEEEEC------------SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS--SCCCCEEECTTSTT
T ss_pred cEEEEEECCCCCcEEEEEC------------CCCcEEEEECCCcccccCccccCCCcEEecCCC--CCeEEEEeCCCCCC
Confidence 4568889997 55777765 57899999965 68899999998 8999999999875
Q ss_pred -EEEEEeCCeEEEEeCCC-Cc-------cccCCCCCccccccCeEEEEEEC-CeEEEEecC-CeEEEEecCCCc----eE
Q 003205 101 -LICVVQDGTVYRYNIHA-EL-------IEPNASMGKECFEENVVECVFWG-NGVVCVTEA-NRYFCMADFATM----KV 165 (839)
Q Consensus 101 -Lv~v~~dGtv~l~~~~G-~~-------~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~-~~~~~v~~~~~~----~~ 165 (839)
|++++.||+|++|++.. .. .....+| ...|.++.+++ ++.++++.+ .....++++... ..
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h-----~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGH-----TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCC-----SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCS
T ss_pred eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCC-----CCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcce
Confidence 68999999999998754 11 1223356 66799999988 666666643 234455665532 11
Q ss_pred EEcCCCCCCCCCceEEEeCCCCCCCCc-EEEEEEeCCeEEEEecCCc-c-----cccCCCceEEEECCCCc-EEEEeecC
Q 003205 166 CELARPEVEELPHCVAVIEPKYTMTGS-VEVLIGTDAGILMLDEDGV-Q-----KVDDTLSQKMAVSPNGN-FVACFTHD 237 (839)
Q Consensus 166 ~~l~~~~~~~~~~~w~vi~~~~S~~~~-~~v~~s~d~tv~l~~~~~~-~-----~~~~~~i~~ia~Spng~-~iA~~~~~ 237 (839)
..+.. +.....++ .|+|++. .+++.+.|++|.+|+.... . ..+.++|..|++||+|+ ++|+.+.|
T Consensus 271 ~~~~~----~~~~v~~i---~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d 343 (430)
T 2xyi_A 271 HTVDA----HTAEVNCL---SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 343 (430)
T ss_dssp EEEEC----CSSCEEEE---EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETT
T ss_pred eEeec----CCCCeEEE---EeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCC
Confidence 22211 11111222 4566887 6778888999999998752 2 45788999999999995 69999999
Q ss_pred CeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCC--ceEeccCCC-eEEeecCCc-eEEEcc
Q 003205 238 GRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAE--PVQYFYDEP-LVLIPECDG-VRILSN 313 (839)
Q Consensus 238 g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~--~v~f~~~~~-~~l~~E~DG-vRIit~ 313 (839)
|+|.||+..-.............+| ++. ..+.|+.+. .+.|.++++ .+++...|| |+||..
T Consensus 344 ~~i~iwd~~~~~~~~~~~~~~~~~~-~~~--------------~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 344 RRLHVWDLSKIGEEQSTEDAEDGPP-ELL--------------FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp SCCEEEEGGGTTCCCCHHHHHHCCT-TEE--------------EECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred CcEEEEeCCCCccccCccccccCCc-ceE--------------EEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 9999998542111000000000011 110 011223322 566777777 777888898 999988
Q ss_pred Ccc
Q 003205 314 SSM 316 (839)
Q Consensus 314 ~~~ 316 (839)
...
T Consensus 409 ~~~ 411 (430)
T 2xyi_A 409 AEN 411 (430)
T ss_dssp CHH
T ss_pred ccc
Confidence 743
No 94
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.50 E-value=3.6e-13 Score=148.35 Aligned_cols=189 Identities=11% Similarity=0.044 Sum_probs=130.7
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCC----ceeEEEecCCCCCeEEEeecCCCe-EEEEEeC
Q 003205 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV----LISETVWKNPGGRLIGMSWSEDQT-LICVVQD 107 (839)
Q Consensus 33 l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~----ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~d 107 (839)
-....++++|+|..||+.. .+++|+||+.... .+.++..|. +.|.++.|+|++. |++++.|
T Consensus 56 ~~v~~~~~s~~~~~l~s~s------------~d~~v~vwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d 121 (377)
T 3dwl_C 56 KIVTCVDWAPKSNRIVTCS------------QDRNAYVYEKRPDGTWKQTLVLLRLN--RAATFVRWSPNEDKFAVGSGA 121 (377)
T ss_dssp SCEEEEEECTTTCCEEEEE------------TTSSEEEC------CCCCEEECCCCS--SCEEEEECCTTSSCCEEEESS
T ss_pred ceEEEEEEeCCCCEEEEEe------------CCCeEEEEEcCCCCceeeeeEecccC--CceEEEEECCCCCEEEEEecC
Confidence 3456899999999999986 5899999997543 466666677 8999999999987 6899999
Q ss_pred CeEEEEeCCCC----ccccCCC-CCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCc----------------eE
Q 003205 108 GTVYRYNIHAE----LIEPNAS-MGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATM----------------KV 165 (839)
Q Consensus 108 Gtv~l~~~~G~----~~~~~~g-~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~----------------~~ 165 (839)
|+|++|++... ......+ | ...|..+.++++|..+++.+.+ ...++++... ..
T Consensus 122 ~~i~iwd~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 196 (377)
T 3dwl_C 122 RVISVCYFEQENDWWVSKHLKRPL-----RSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFN 196 (377)
T ss_dssp SCEEECCC-----CCCCEEECSSC-----CSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEE
T ss_pred CeEEEEEECCcccceeeeEeeccc-----CCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchh
Confidence 99999987543 2333333 6 6789999999998777775432 2334444210 11
Q ss_pred EEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc---------cccCCCceEEEECCCCcEEEEeec
Q 003205 166 CELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---------KVDDTLSQKMAVSPNGNFVACFTH 236 (839)
Q Consensus 166 ~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~---------~~~~~~i~~ia~Spng~~iA~~~~ 236 (839)
..+... ++.....++ .|||+|+.++..+.|++|++|+..... ..+..+|..++|||+|++||+++.
T Consensus 197 ~~~~~~--~~~~~v~~~---~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 271 (377)
T 3dwl_C 197 TVCAEY--PSGGWVHAV---GFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYN 271 (377)
T ss_dssp EEEECC--CCSSSEEEE---EECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESS
T ss_pred hhhhcc--cCCceEEEE---EECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcC
Confidence 111111 112222333 577899999999999999999977432 467788999999999999999987
Q ss_pred CCeEEEEecC
Q 003205 237 DGRLVVNNTN 246 (839)
Q Consensus 237 ~g~i~i~ssd 246 (839)
++.+ +|..+
T Consensus 272 ~~~~-~~~~~ 280 (377)
T 3dwl_C 272 YSPI-LLQGN 280 (377)
T ss_dssp SSEE-EECCC
T ss_pred CcEE-EEEeC
Confidence 7766 66543
No 95
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.50 E-value=3.7e-13 Score=145.68 Aligned_cols=192 Identities=14% Similarity=0.092 Sum_probs=134.2
Q ss_pred CCCEEEEcC--CCCeEEEEecCchhhhhhcccCCceEEEEcCC-C--CceeEEEecCCCCCeEEEeecCC--Ce-EEEEE
Q 003205 34 SRNKVACAP--FGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-G--VLISETVWKNPGGRLIGMSWSED--QT-LICVV 105 (839)
Q Consensus 34 ~~~~va~sp--~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G--~ll~ti~~~~~~~~I~~~~fs~d--e~-Lv~v~ 105 (839)
....++++| +|..+|+.+ .|++|+||+.. | +.+.++..|. +.|.++.|+|+ +. |++++
T Consensus 59 ~V~~v~~~~~~~~~~l~s~s------------~D~~v~iWd~~~~~~~~~~~~~~h~--~~V~~v~~~p~~~g~~lasgs 124 (316)
T 3bg1_A 59 PVWQVAWAHPMYGNILASCS------------YDRKVIIWREENGTWEKSHEHAGHD--SSVNSVCWAPHDYGLILACGS 124 (316)
T ss_dssp CEEEEEECCGGGSSCEEEEE------------TTSCEEEECCSSSCCCEEEEECCCS--SCCCEEEECCTTTCSCEEEEC
T ss_pred cEEEEEeCCCCCCCEEEEEE------------CCCEEEEEECCCCcceEEEEccCCC--CceEEEEECCCCCCcEEEEEc
Confidence 455788876 488888886 68999999975 4 3566677787 89999999997 54 78999
Q ss_pred eCCeEEEEeCCCC--c--cccCCCCCccccccCeEEEEEECC-----------------eEEEEecCCe-EEEEecCCCc
Q 003205 106 QDGTVYRYNIHAE--L--IEPNASMGKECFEENVVECVFWGN-----------------GVVCVTEANR-YFCMADFATM 163 (839)
Q Consensus 106 ~dGtv~l~~~~G~--~--~~~~~g~~~~~~~~~V~~~~~~~~-----------------G~v~~t~~~~-~~~v~~~~~~ 163 (839)
.||+|++|++.+. . .....+| ...|..+.+.++ |..+++++.+ ...+|+....
T Consensus 125 ~D~~i~lwd~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~ 199 (316)
T 3bg1_A 125 SDGAISLLTYTGEGQWEVKKINNAH-----TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED 199 (316)
T ss_dssp SSSCEEEEEECSSSCEEECCBTTSS-----SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT
T ss_pred CCCCEEEEecCCCCCcceeeeeccc-----cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC
Confidence 9999999987643 2 3344556 556777777775 3456665432 2334444322
Q ss_pred -eEEEcCCCCCCCCCceEEEeCCCCCCCC----cEEEEEEeCCeEEEEecCCc-------c--cccCCCceEEEECCCCc
Q 003205 164 -KVCELARPEVEELPHCVAVIEPKYTMTG----SVEVLIGTDAGILMLDEDGV-------Q--KVDDTLSQKMAVSPNGN 229 (839)
Q Consensus 164 -~~~~l~~~~~~~~~~~w~vi~~~~S~~~----~~~v~~s~d~tv~l~~~~~~-------~--~~~~~~i~~ia~Spng~ 229 (839)
....+... .++....+++ .|||++ ..++..+.|++|++|+.... . ..+.++|..++|||+|+
T Consensus 200 ~~~~~~~~l-~~h~~~V~~v---~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~ 275 (316)
T 3bg1_A 200 GQWKEEQKL-EAHSDWVRDV---AWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITAN 275 (316)
T ss_dssp SCEEEEECC-BCCSSCEEEE---ECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTC
T ss_pred Cccceeeec-ccCCCceEEE---EecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCC
Confidence 11111110 1122233444 566675 78999999999999987641 1 34678899999999999
Q ss_pred EEEEeecCCeEEEEecCCC
Q 003205 230 FVACFTHDGRLVVNNTNFS 248 (839)
Q Consensus 230 ~iA~~~~~g~i~i~ssd~~ 248 (839)
+||+++.||++++|+.+..
T Consensus 276 ~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 276 ILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp CEEEEESSSCEEEEEECTT
T ss_pred EEEEEcCCCeEEEEEECCC
Confidence 9999999999999986543
No 96
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.49 E-value=8.1e-13 Score=143.50 Aligned_cols=193 Identities=9% Similarity=0.040 Sum_probs=137.1
Q ss_pred CCCEEEEcCC---CCeEEEEecCchhhhhhcccCCceEEEEcCC-CC-ceeEEEecCCCCCeEEE------eecCCCe-E
Q 003205 34 SRNKVACAPF---GGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GV-LISETVWKNPGGRLIGM------SWSEDQT-L 101 (839)
Q Consensus 34 ~~~~va~sp~---Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G~-ll~ti~~~~~~~~I~~~------~fs~de~-L 101 (839)
....++++|+ |..+|+.. .++.|++|+.. |+ ++.++..|. +.|.++ .|+|++. |
T Consensus 67 ~v~~~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~s~~~~~l 132 (357)
T 3i2n_A 67 PIKCGTFGATSLQQRYLATGD------------FGGNLHIWNLEAPEMPVYSVKGHK--EIINAIDGIGGLGIGEGAPEI 132 (357)
T ss_dssp CEEEEECTTCCTTTCCEEEEE------------TTSCEEEECTTSCSSCSEEECCCS--SCEEEEEEESGGGCC-CCCEE
T ss_pred cEEEEEEcCCCCCCceEEEec------------CCCeEEEEeCCCCCccEEEEEecc--cceEEEeeccccccCCCccEE
Confidence 4467889998 68888876 58999999964 55 788898888 999999 4577886 6
Q ss_pred EEEEeCCeEEEEeCC-CC-ccccCCCCCccccccCeEEEE----EECCeEEEEecCC-eEEEEecCCCceEEEcCCCCCC
Q 003205 102 ICVVQDGTVYRYNIH-AE-LIEPNASMGKECFEENVVECV----FWGNGVVCVTEAN-RYFCMADFATMKVCELARPEVE 174 (839)
Q Consensus 102 v~v~~dGtv~l~~~~-G~-~~~~~~g~~~~~~~~~V~~~~----~~~~G~v~~t~~~-~~~~v~~~~~~~~~~l~~~~~~ 174 (839)
++++.||+|++|++. ++ .......+... ....|..+. ++++|..+++++. ....++++..........
T Consensus 133 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---- 207 (357)
T 3i2n_A 133 VTGSRDGTVKVWDPRQKDDPVANMEPVQGE-NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN---- 207 (357)
T ss_dssp EEEETTSCEEEECTTSCSSCSEEECCCTTS-CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE----
T ss_pred EEEeCCCeEEEEeCCCCCCcceeccccCCC-CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC----
Confidence 899999999999864 33 33322222110 033677777 4567777777543 345567776655433321
Q ss_pred CCCceEEEeCCCCCC---CCcEEEEEEeCCeEEEEecCCcc-----c-----ccCCCceEEEECCCCc-EEEEeecCCeE
Q 003205 175 ELPHCVAVIEPKYTM---TGSVEVLIGTDAGILMLDEDGVQ-----K-----VDDTLSQKMAVSPNGN-FVACFTHDGRL 240 (839)
Q Consensus 175 ~~~~~w~vi~~~~S~---~~~~~v~~s~d~tv~l~~~~~~~-----~-----~~~~~i~~ia~Spng~-~iA~~~~~g~i 240 (839)
......++ .|+| +++.++..+.|++|++|+..... . .+..+|..+++||+|+ ++|+++.||+|
T Consensus 208 ~~~~v~~~---~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 284 (357)
T 3i2n_A 208 IKNGVCSL---EFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGL 284 (357)
T ss_dssp CSSCEEEE---EESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred CCCceEEE---EcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcE
Confidence 12222223 5667 88999999999999999987543 2 6888999999999999 89999999999
Q ss_pred EEEecCCC
Q 003205 241 VVNNTNFS 248 (839)
Q Consensus 241 ~i~ssd~~ 248 (839)
.+|+....
T Consensus 285 ~iwd~~~~ 292 (357)
T 3i2n_A 285 HLWKYEYP 292 (357)
T ss_dssp EEEEEECC
T ss_pred EEeecCCC
Confidence 99986533
No 97
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.49 E-value=5.7e-13 Score=141.87 Aligned_cols=245 Identities=11% Similarity=0.022 Sum_probs=172.8
Q ss_pred CCceeEEEecCCCCCeEEEeecCCC-eEEEEEeCCeEEEEeCCC-CccccCCCCCccccccCeEEEEEECCeEEEEecC-
Q 003205 75 GVLISETVWKNPGGRLIGMSWSEDQ-TLICVVQDGTVYRYNIHA-ELIEPNASMGKECFEENVVECVFWGNGVVCVTEA- 151 (839)
Q Consensus 75 G~ll~ti~~~~~~~~I~~~~fs~de-~Lv~v~~dGtv~l~~~~G-~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~- 151 (839)
.+++.++..|. +.|.++.| +++ .|++++.||+|++|++.+ +......+| ...|..+.++++|..+++++
T Consensus 8 ~~~~~~l~~h~--~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~ 79 (313)
T 3odt_A 8 YQLSATLKGHD--QDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTG-----QGFLNSVCYDSEKELLLFGGK 79 (313)
T ss_dssp CEEEEEECCCS--SCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEEC-----SSCEEEEEEETTTTEEEEEET
T ss_pred HHHHHHhhCCC--CCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecC-----CccEEEEEECCCCCEEEEecC
Confidence 36778889998 99999999 555 578999999999998754 445555556 66799999999887777754
Q ss_pred -CeEEEEecCCCc---e-EEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc---cccCCCceEEE
Q 003205 152 -NRYFCMADFATM---K-VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---KVDDTLSQKMA 223 (839)
Q Consensus 152 -~~~~~v~~~~~~---~-~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~---~~~~~~i~~ia 223 (839)
+.+ .++++... . ...+.. +....+++ . | +++.++..+.|++|++|+..... ..+..++..++
T Consensus 80 dg~i-~~~~~~~~~~~~~~~~~~~----~~~~i~~~-~--~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~ 149 (313)
T 3odt_A 80 DTMI-NGVPLFATSGEDPLYTLIG----HQGNVCSL-S--F--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAK 149 (313)
T ss_dssp TSCE-EEEETTCCTTSCC-CEECC----CSSCEEEE-E--E--ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEE
T ss_pred CCeE-EEEEeeecCCCCcccchhh----cccCEEEE-E--e--cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEE
Confidence 333 33333321 1 122211 22222333 1 1 67889999999999999933322 56788999999
Q ss_pred ECC-CCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeee--------cCceEEEEecC-----EEEEEcCCCC
Q 003205 224 VSP-NGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC--------GMDSVLLYWND-----MLVMVAPQAE 289 (839)
Q Consensus 224 ~Sp-ng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~Wc--------G~d~vv~~~~~-----~l~lig~~~~ 289 (839)
++| +++.+++++.+|++.+|+ ..+....+.......+..+.|. +.|..+..|+- ...+.++.+.
T Consensus 150 ~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 227 (313)
T 3odt_A 150 VVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESF 227 (313)
T ss_dssp EEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred EccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCce
Confidence 988 999999999999999997 3455555554224456667775 44555666642 2344556654
Q ss_pred --ceEeccCCCeEEeecCCc-eEEEccCcceeeeccchhhHhhhccCCCChhhh
Q 003205 290 --PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIGSTSPAAL 340 (839)
Q Consensus 290 --~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~~~~vf~igS~~pga~ 340 (839)
.+.|.+++ .+++...|| |+||.....+.++.++.+...|..+..++.+.+
T Consensus 228 i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 280 (313)
T 3odt_A 228 VYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDI 280 (313)
T ss_dssp EEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCE
T ss_pred EEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCE
Confidence 67788887 577888898 999999989999998888777877777666653
No 98
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.49 E-value=5e-13 Score=151.28 Aligned_cols=211 Identities=11% Similarity=0.127 Sum_probs=146.4
Q ss_pred CceeEEEecCCCCCeEEEeecCC-Ce-EEEEEeCCeEEEEeCC-CCc--cccCCCCCccccccCeEEEEEEC-CeEEEEe
Q 003205 76 VLISETVWKNPGGRLIGMSWSED-QT-LICVVQDGTVYRYNIH-AEL--IEPNASMGKECFEENVVECVFWG-NGVVCVT 149 (839)
Q Consensus 76 ~ll~ti~~~~~~~~I~~~~fs~d-e~-Lv~v~~dGtv~l~~~~-G~~--~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t 149 (839)
.+..+...+. .+|.+++|+|. +. |++++.||+|++||+. ++. .....|| ...|.++.|+| +|..++|
T Consensus 110 ~~~~~~~~~~--~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH-----~~~V~~l~f~p~~~~~l~s 182 (435)
T 4e54_B 110 RILQKAAPFD--RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGA-----GGSITGLKFNPLNTNQFYA 182 (435)
T ss_dssp TSCCEEEECS--SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSS-----SCCCCEEEECSSCTTEEEE
T ss_pred eecccCCCCC--CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCC-----CCCEEEEEEeCCCCCEEEE
Confidence 4455666777 89999999994 44 6799999999999975 333 3345678 67899999997 7877777
Q ss_pred cCCe-EEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----cccCCCceEEEE
Q 003205 150 EANR-YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAV 224 (839)
Q Consensus 150 ~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----~~~~~~i~~ia~ 224 (839)
++.+ .+.+|++++.....+... .....| +....|+|+|..++..+.|++|++|+.++.. ..|.++|..|+|
T Consensus 183 ~s~D~~v~iwd~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~ 258 (435)
T 4e54_B 183 SSMEGTTRLQDFKGNILRVFASS---DTINIW-FCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVAL 258 (435)
T ss_dssp ECSSSCEEEEETTSCEEEEEECC---SSCSCC-CCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEE
T ss_pred EeCCCEEEEeeccCCceeEEecc---CCCCcc-EEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeee
Confidence 6543 456788876554444331 111111 1122456799999999999999999998764 578899999999
Q ss_pred CCCCc-EEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCC--ceEeccCCCeEE
Q 003205 225 SPNGN-FVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAE--PVQYFYDEPLVL 301 (839)
Q Consensus 225 Spng~-~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~--~v~f~~~~~~~l 301 (839)
||+|+ ++|+++.||+|.||+..-.+....+... .|+.+. .+.|.+++..++
T Consensus 259 ~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~--------------------------~~h~~~v~~~~~spdg~~l~ 312 (435)
T 4e54_B 259 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS--------------------------LPHRHPVNAACFSPDGARLL 312 (435)
T ss_dssp CTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBC--------------------------CBCSSCEEECCBCTTSSEEE
T ss_pred cCCCceEEEEecCcceeeEEecccccccceEEEe--------------------------eeccccccceeECCCCCeeE
Confidence 99986 7889999999999975422221111000 011111 356667778888
Q ss_pred eecCCc-eEEEccCcceeeeccc
Q 003205 302 IPECDG-VRILSNSSMEFLQRVP 323 (839)
Q Consensus 302 ~~E~DG-vRIit~~~~~~l~~Vp 323 (839)
+...|| ||||.....+......
T Consensus 313 s~~~D~~i~iwd~~~~~~~~~~~ 335 (435)
T 4e54_B 313 TTDQKSEIRVYSASQWDCPLGLI 335 (435)
T ss_dssp EEESSSCEEEEESSSSSSEEEEC
T ss_pred EEcCCCEEEEEECCCCccceEEe
Confidence 888898 9999887666555443
No 99
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.49 E-value=3.2e-13 Score=147.06 Aligned_cols=211 Identities=14% Similarity=0.122 Sum_probs=148.1
Q ss_pred CCCEEEEcCC----CCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecC-CCe-EEEEEe
Q 003205 34 SRNKVACAPF----GGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSE-DQT-LICVVQ 106 (839)
Q Consensus 34 ~~~~va~sp~----Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~-de~-Lv~v~~ 106 (839)
....++++|+ |..+|+.. .+++|++|+. .|+++.++..|. +.|.++.|+| ++. |++++.
T Consensus 71 ~v~~~~~~~~~~~~~~~l~~~~------------~dg~i~v~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~s~~~ 136 (366)
T 3k26_A 71 NFYTCAWTYDSNTSHPLLAVAG------------SRGIIRIINPITMQCIKHYVGHG--NAINELKFHPRDPNLLLSVSK 136 (366)
T ss_dssp CEEEEEEEECTTTCCEEEEEEE------------TTCEEEEECTTTCCEEEEEESCC--SCEEEEEECSSCTTEEEEEET
T ss_pred cEEEEEeccCCCCCCCEEEEec------------CCCEEEEEEchhceEeeeecCCC--CcEEEEEECCCCCCEEEEEeC
Confidence 4567889999 66788876 5899999994 689999999888 9999999999 776 689999
Q ss_pred CCeEEEEeCC-CCccccC---CCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCceEE-EcC-----------
Q 003205 107 DGTVYRYNIH-AELIEPN---ASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKVC-ELA----------- 169 (839)
Q Consensus 107 dGtv~l~~~~-G~~~~~~---~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~~~-~l~----------- 169 (839)
||+|++|++. |+..... .+| ...|..+.++++|..+++.+. ....++++...... .+.
T Consensus 137 dg~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 211 (366)
T 3k26_A 137 DHALRLWNIQTDTLVAIFGGVEGH-----RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTN 211 (366)
T ss_dssp TSCEEEEETTTTEEEEEECSTTSC-----SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCS
T ss_pred CCeEEEEEeecCeEEEEecccccc-----cCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCc
Confidence 9999999975 5544333 456 678999999998877777543 23445555532211 000
Q ss_pred --CCC-------------CCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-------------------ccc
Q 003205 170 --RPE-------------VEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-------------------KVD 215 (839)
Q Consensus 170 --~~~-------------~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-------------------~~~ 215 (839)
... -.....+. .|+ ++.++..+.|++|++|+..... ..+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (366)
T 3k26_A 212 RPFISQKIHFPDFSTRDIHRNYVDCV-----RWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS 284 (366)
T ss_dssp SCCCCEEECCCSEEECSSCSSCCCEE-----EEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS
T ss_pred ccccceeeccCccccccCCcceEEEE-----EEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc
Confidence 000 00111211 222 6788888899999999976421 346
Q ss_pred CCCceEEEECCC--CcEEEEeecCCeEEEEecCCCCccc----cccCCC-CCCCCceeeecC
Q 003205 216 DTLSQKMAVSPN--GNFVACFTHDGRLVVNNTNFSSPVI----DESCES-ALPPEQIAWCGM 270 (839)
Q Consensus 216 ~~~i~~ia~Spn--g~~iA~~~~~g~i~i~ssd~~~~l~----e~~~~~-~~~p~~~~WcG~ 270 (839)
..++..+++||+ |++||+++.||+|.+|+.+-.+... .+..+. ...+..+.|+-+
T Consensus 285 ~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 346 (366)
T 3k26_A 285 QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRD 346 (366)
T ss_dssp SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTT
T ss_pred CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCC
Confidence 678999999999 9999999999999999977554332 333331 345667777643
No 100
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.49 E-value=8.3e-13 Score=142.54 Aligned_cols=255 Identities=11% Similarity=0.101 Sum_probs=169.5
Q ss_pred CCCceeEEEecCCCCCeEEEeecCC-Ce-EEEEEeCCeEEEEeCCCC------ccccCCCCCccccccCeEEEEEECCeE
Q 003205 74 AGVLISETVWKNPGGRLIGMSWSED-QT-LICVVQDGTVYRYNIHAE------LIEPNASMGKECFEENVVECVFWGNGV 145 (839)
Q Consensus 74 ~G~ll~ti~~~~~~~~I~~~~fs~d-e~-Lv~v~~dGtv~l~~~~G~------~~~~~~g~~~~~~~~~V~~~~~~~~G~ 145 (839)
..++..++++|. +.|.+++|+|+ ++ |++++.||+|++|++... ......+| ...|..+.|.++|.
T Consensus 27 ~~~l~~tL~GH~--~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h-----~~~V~~~~~s~dg~ 99 (340)
T 4aow_A 27 QMTLRGTLKGHN--GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH-----SHFVSDVVISSDGQ 99 (340)
T ss_dssp EEEEEEEECCCS--SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCC-----SSCEEEEEECTTSS
T ss_pred ceEEEEEECCcc--CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCC-----CCCEEEEEECCCCC
Confidence 446777899999 99999999997 45 689999999999986432 23345667 67899999999998
Q ss_pred EEEecCCe-EEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc------cccCCC
Q 003205 146 VCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTL 218 (839)
Q Consensus 146 v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~------~~~~~~ 218 (839)
.+++++.+ ...+++............ ........ .+++++..++..+.|+.+.+|+..+.. ..+...
T Consensus 100 ~l~s~~~d~~i~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~ 173 (340)
T 4aow_A 100 FALSGSWDGTLRLWDLTTGTTTRRFVG---HTKDVLSV---AFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 173 (340)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEEC---CSSCEEEE---EECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSC
T ss_pred EEEEEcccccceEEeecccceeeeecC---CCCceeEE---EEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCc
Confidence 88886442 334454443332221110 11111212 234588999999999999999987643 456788
Q ss_pred ceEEEECCCC--cEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeee---------cCceEEEEecC----EEE-
Q 003205 219 SQKMAVSPNG--NFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC---------GMDSVLLYWND----MLV- 282 (839)
Q Consensus 219 i~~ia~Spng--~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~Wc---------G~d~vv~~~~~----~l~- 282 (839)
+..++++|++ .++++.+.|++|.+|+..-.+.+..+..+ ...+..++|. +.|..+..|+- .+.
T Consensus 174 v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 252 (340)
T 4aow_A 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH-TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT 252 (340)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred ccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCC-CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee
Confidence 9999999886 46788889999999997766666566554 3345566664 56677777752 232
Q ss_pred EEcCCCC-ceEeccCCCeEEeecCCc-eEEEccCcceeeeccchh---------hHhhhccCCCChhhhHHH
Q 003205 283 MVAPQAE-PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPAS---------TEQIFAIGSTSPAALLYD 343 (839)
Q Consensus 283 lig~~~~-~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~~---------~~~vf~igS~~pga~L~~ 343 (839)
+.++..- .+.|.+++.++. ...|| |+||..+....+..++.. ...|..+..++.|.+|+.
T Consensus 253 ~~~~~~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 323 (340)
T 4aow_A 253 LDGGDIINALCFSPNRYWLC-AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA 323 (340)
T ss_dssp EECSSCEEEEEECSSSSEEE-EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEE
T ss_pred ecCCceEEeeecCCCCceee-ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEE
Confidence 3333222 556665555444 44576 999999887777766543 233444545555555443
No 101
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.49 E-value=5.5e-13 Score=147.60 Aligned_cols=232 Identities=8% Similarity=0.068 Sum_probs=162.2
Q ss_pred eeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCC-CC------ccccCCCCCccccccCeEEEEEECC----e--
Q 003205 78 ISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIH-AE------LIEPNASMGKECFEENVVECVFWGN----G-- 144 (839)
Q Consensus 78 l~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~-G~------~~~~~~g~~~~~~~~~V~~~~~~~~----G-- 144 (839)
..++..|. +.|.++.|+| ..|++++.||+|++|++. ++ ......+| ...|..+.|+++ |
T Consensus 9 ~~~~~~h~--~~i~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~g~~ 80 (397)
T 1sq9_A 9 ANAGKAHD--ADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH-----KSGLHHVDVLQAIERDAFE 80 (397)
T ss_dssp EEESSCSS--SCEEEEEECS-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECC-----TTCEEEEEEEEEEETTTEE
T ss_pred hhhhhhhh--cCeEEEEecC-CeEEEEcCCCEEEEEECCCcccccCCCcceEEecC-----CCcEEEEEEecccccCCcc
Confidence 34456777 9999999999 778999999999999864 44 34445567 677999999998 8
Q ss_pred -EEEEec--CCeEEEEecCCCce------EEEcCCCCCCC--CCceEEEeCCCCC----CCCcE-EEEEEeCCeEEEEec
Q 003205 145 -VVCVTE--ANRYFCMADFATMK------VCELARPEVEE--LPHCVAVIEPKYT----MTGSV-EVLIGTDAGILMLDE 208 (839)
Q Consensus 145 -~v~~t~--~~~~~~v~~~~~~~------~~~l~~~~~~~--~~~~w~vi~~~~S----~~~~~-~v~~s~d~tv~l~~~ 208 (839)
..+++. ++.+ .+|++.... ...+..... . ....+++ .|+ |++.. ++..+.|++|++|+.
T Consensus 81 ~~~l~s~~~dg~i-~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~---~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 81 LCLVATTSFSGDL-LFYRITREDETKKVIFEKLDLLDS-DMKKHSFWAL---KWGASNDRLLSHRLVATDVKGTTYIWKF 155 (397)
T ss_dssp EEEEEEEETTSCE-EEEEEEECTTTCCEEEEEECCSCT-TGGGSCEEEE---EEECCC----CEEEEEEETTSCEEEEEE
T ss_pred ccEEEEEcCCCCE-EEEEccCCcccccccceeeccccc-ccCCCcEEEE---EEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence 666665 3443 334433222 333332100 0 1223333 445 69999 888889999999997
Q ss_pred CC------cc--c---------------ccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccC---C--CCC
Q 003205 209 DG------VQ--K---------------VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESC---E--SAL 260 (839)
Q Consensus 209 ~~------~~--~---------------~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~---~--~~~ 260 (839)
.. .. . .+..++..+++||+| .+++++.+|+|.+|+..-.+.+..+.. + ...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~ 234 (397)
T 1sq9_A 156 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 234 (397)
T ss_dssp ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred CccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCC
Confidence 76 22 1 147789999999999 999999999999999775666666655 2 023
Q ss_pred CCCceeee---------cCc---eEEEEecC-----EEEEEc-------------CCCC--ceEeccCCCeEEeecCCc-
Q 003205 261 PPEQIAWC---------GMD---SVLLYWND-----MLVMVA-------------PQAE--PVQYFYDEPLVLIPECDG- 307 (839)
Q Consensus 261 ~p~~~~Wc---------G~d---~vv~~~~~-----~l~lig-------------~~~~--~v~f~~~~~~~l~~E~DG- 307 (839)
.+..+.|+ +.| ..+..|+- ...+.+ +.+. .+.|.+++..+++...||
T Consensus 235 ~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 314 (397)
T 1sq9_A 235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK 314 (397)
T ss_dssp CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE
T ss_pred ccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCe
Confidence 45566665 455 67777762 234445 4443 688888899999999999
Q ss_pred eEEEccCcceeeeccc
Q 003205 308 VRILSNSSMEFLQRVP 323 (839)
Q Consensus 308 vRIit~~~~~~l~~Vp 323 (839)
|+||.....+.+..++
T Consensus 315 i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 315 LRFWDVKTKERITTLN 330 (397)
T ss_dssp EEEEETTTTEEEEEEE
T ss_pred EEEEEcCCCceeEEEe
Confidence 9999999899999988
No 102
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.49 E-value=1.7e-12 Score=144.84 Aligned_cols=213 Identities=12% Similarity=0.095 Sum_probs=149.8
Q ss_pred CCCEEEEcC-CCCeEEEEecCchhhhhhcccCCceEEEEcCC-C-------CceeEEEecCCCCCeEEEeecCCC--eEE
Q 003205 34 SRNKVACAP-FGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-G-------VLISETVWKNPGGRLIGMSWSEDQ--TLI 102 (839)
Q Consensus 34 ~~~~va~sp-~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G-------~ll~ti~~~~~~~~I~~~~fs~de--~Lv 102 (839)
....++++| +|..+|+.. .|++|+||+.. | +.+.++..|. +.|.++.|+|++ .|+
T Consensus 83 ~V~~~~~~p~~~~~l~s~s------------~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~p~~~~~l~ 148 (402)
T 2aq5_A 83 PVLDIAWCPHNDNVIASGS------------EDCTVMVWEIPDGGLVLPLREPVITLEGHT--KRVGIVAWHPTAQNVLL 148 (402)
T ss_dssp CEEEEEECTTCTTEEEEEE------------TTSEEEEEECCTTCCSSCBCSCSEEEECCS--SCEEEEEECSSBTTEEE
T ss_pred CEEEEEeCCCCCCEEEEEe------------CCCeEEEEEccCCCCccccCCceEEecCCC--CeEEEEEECcCCCCEEE
Confidence 456889999 888999886 58999999964 4 5788899998 999999999997 368
Q ss_pred EEEeCCeEEEEeCC-CCccccC--CCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCceE-EEcCCCCCCCCC
Q 003205 103 CVVQDGTVYRYNIH-AELIEPN--ASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKV-CELARPEVEELP 177 (839)
Q Consensus 103 ~v~~dGtv~l~~~~-G~~~~~~--~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~~-~~l~~~~~~~~~ 177 (839)
+++.||+|++||+. |+..... .+| ...|..+.++++|..+++++. ....++++..... ..+.....+..+
T Consensus 149 s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 223 (402)
T 2aq5_A 149 SAGCDNVILVWDVGTGAAVLTLGPDVH-----PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRP 223 (402)
T ss_dssp EEETTSCEEEEETTTTEEEEEECTTTC-----CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSC
T ss_pred EEcCCCEEEEEECCCCCccEEEecCCC-----CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcc
Confidence 99999999999964 5554444 556 677999999998877777543 3455666664432 333111110112
Q ss_pred ceEEEeCCCCCCCCcEEEEE---EeCCeEEEEecCCcc-------cccCCCceEEEECCCCcEEEEee-cCCeEEEEecC
Q 003205 178 HCVAVIEPKYTMTGSVEVLI---GTDAGILMLDEDGVQ-------KVDDTLSQKMAVSPNGNFVACFT-HDGRLVVNNTN 246 (839)
Q Consensus 178 ~~w~vi~~~~S~~~~~~v~~---s~d~tv~l~~~~~~~-------~~~~~~i~~ia~Spng~~iA~~~-~~g~i~i~ssd 246 (839)
.+ + .|+|+|..++.. +.|++|++|+..... ..+...+..+++||+|+++++.+ .||+|.+|+.+
T Consensus 224 ~~--~---~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~ 298 (402)
T 2aq5_A 224 VH--A---VFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT 298 (402)
T ss_dssp CE--E---EECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEEC
T ss_pred eE--E---EEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEec
Confidence 22 2 355688887777 579999999987532 24567799999999999997655 69999999876
Q ss_pred CCCc-cccccCC-CCCCCCceeeecC
Q 003205 247 FSSP-VIDESCE-SALPPEQIAWCGM 270 (839)
Q Consensus 247 ~~~~-l~e~~~~-~~~~p~~~~WcG~ 270 (839)
-.+. +..+... ....+..+.|..+
T Consensus 299 ~~~~~~~~l~~~~~~~~v~~~~~sp~ 324 (402)
T 2aq5_A 299 SEAPFLHYLSMFSSKESQRGMGYMPK 324 (402)
T ss_dssp SSTTCEEEEEEECCSSCCSEEEECCG
T ss_pred CCCcceEeecccccCCcccceEEecc
Confidence 4442 2222211 1345667777643
No 103
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.49 E-value=1.7e-12 Score=145.16 Aligned_cols=209 Identities=12% Similarity=0.066 Sum_probs=149.5
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYR 112 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l 112 (839)
....++++|+|..+|+.. .++.|+||+. .|+.+.++..|. +.|.++.|+ ...+++++.||+|++
T Consensus 136 ~v~~v~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~-~~~l~~~~~dg~i~i 200 (401)
T 4aez_A 136 YVASVKWSHDGSFLSVGL------------GNGLVDIYDVESQTKLRTMAGHQ--ARVGCLSWN-RHVLSSGSRSGAIHH 200 (401)
T ss_dssp CEEEEEECTTSSEEEEEE------------TTSCEEEEETTTCCEEEEECCCS--SCEEEEEEE-TTEEEEEETTSEEEE
T ss_pred CEEEEEECCCCCEEEEEC------------CCCeEEEEECcCCeEEEEecCCC--CceEEEEEC-CCEEEEEcCCCCEEE
Confidence 446889999999999986 5899999994 688999999888 999999995 346899999999999
Q ss_pred EeCC--CCccccCCCCCccccccCeEEEEEECCeEEEEecCC-eEEEEecCCCce-EEEcCCCCCCCCCceEEEeCCCCC
Q 003205 113 YNIH--AELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMK-VCELARPEVEELPHCVAVIEPKYT 188 (839)
Q Consensus 113 ~~~~--G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~-~~~l~~~~~~~~~~~w~vi~~~~S 188 (839)
|++. +.......+| ...|..+.++++|..+++++. ....+|++.... ...+... ...+.+ + .|+
T Consensus 201 ~d~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~--~~~v~~--~---~~~ 268 (401)
T 4aez_A 201 HDVRIANHQIGTLQGH-----SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNH--NAAVKA--V---AWC 268 (401)
T ss_dssp EETTSSSCEEEEEECC-----SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCC--SSCCCE--E---EEC
T ss_pred EecccCcceeeEEcCC-----CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCC--cceEEE--E---EEC
Confidence 9975 3445556667 677999999998877777643 344566665433 2233221 022232 2 455
Q ss_pred CCCcEEEEEE---eCCeEEEEecCCcc----cccCCCceEEEECCCCcEEEEee--cCCeEEEEecCCCCccc--cccCC
Q 003205 189 MTGSVEVLIG---TDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFT--HDGRLVVNNTNFSSPVI--DESCE 257 (839)
Q Consensus 189 ~~~~~~v~~s---~d~tv~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~~--~~g~i~i~ssd~~~~l~--e~~~~ 257 (839)
|++..++..+ .|++|++|+..... ..+..++..+++||+|+.+++.+ .+|+|.+|+..-.+... ++..+
T Consensus 269 p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h 348 (401)
T 4aez_A 269 PWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH 348 (401)
T ss_dssp TTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC
T ss_pred CCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCC
Confidence 6776555544 59999999987543 34567899999999999999954 89999999865433322 23333
Q ss_pred CCCCCCceeeecC
Q 003205 258 SALPPEQIAWCGM 270 (839)
Q Consensus 258 ~~~~p~~~~WcG~ 270 (839)
...+..+.|.-+
T Consensus 349 -~~~v~~~~~s~d 360 (401)
T 4aez_A 349 -DTRVLYSALSPD 360 (401)
T ss_dssp -SSCCCEEEECTT
T ss_pred -CCCEEEEEECCC
Confidence 346677777643
No 104
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.48 E-value=2e-12 Score=138.70 Aligned_cols=195 Identities=11% Similarity=0.094 Sum_probs=136.8
Q ss_pred CCCEEEEcC--CCCeEEEEecCchhhhhhcccCCceEEEEcCCC----------CceeEEEecCCCCCeEEEeecCC--C
Q 003205 34 SRNKVACAP--FGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG----------VLISETVWKNPGGRLIGMSWSED--Q 99 (839)
Q Consensus 34 ~~~~va~sp--~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G----------~ll~ti~~~~~~~~I~~~~fs~d--e 99 (839)
....++++| +|..+|+.. .+++|++|+... +++.++..|. +.|.++.|+|+ +
T Consensus 59 ~v~~~~~~~~~d~~~l~s~~------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~ 124 (351)
T 3f3f_A 59 SIVAIDWASPEYGRIIASAS------------YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK--GSLYSVKFAPAHLG 124 (351)
T ss_dssp CEEEEEECCGGGCSEEEEEE------------TTSCEEEEEECTTSCTTSSCSEEEEEEECCCS--SCEEEEEECCGGGC
T ss_pred cEEEEEEcCCCCCCEEEEEc------------CCCeEEEEecCCCcccccccCcceeeeecccC--CceeEEEEcCCCCC
Confidence 456788898 688999886 589999999755 5577888887 99999999998 7
Q ss_pred e-EEEEEeCCeEEEEeCC-CCcccc-C------------CCCCccccccCeEEEEEECC---eEEEEecCC-eEEEEecC
Q 003205 100 T-LICVVQDGTVYRYNIH-AELIEP-N------------ASMGKECFEENVVECVFWGN---GVVCVTEAN-RYFCMADF 160 (839)
Q Consensus 100 ~-Lv~v~~dGtv~l~~~~-G~~~~~-~------------~g~~~~~~~~~V~~~~~~~~---G~v~~t~~~-~~~~v~~~ 160 (839)
. +++++.||+|++|++. ++.... . .++ ...|..+.+.++ |..++++.. ....++..
T Consensus 125 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~ 199 (351)
T 3f3f_A 125 LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH-----LQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRG 199 (351)
T ss_dssp SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSC-----SCCCEEEEECCCSSSCCEEEEEETTEEEEEEEC
T ss_pred cEEEEecCCCcEEEecCCChHHhccccccccccccccccCCc-----ccceeEEEeccCCCCCcEEEEecCCCcEEEEcc
Confidence 6 6899999999999864 443221 1 123 456788888764 555555433 23333433
Q ss_pred CCceEEEcCCCCCCCCCceEEEeCCCCCCCC----cEEEEEEeCCeEEEEecCCc-------------------------
Q 003205 161 ATMKVCELARPEVEELPHCVAVIEPKYTMTG----SVEVLIGTDAGILMLDEDGV------------------------- 211 (839)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~----~~~v~~s~d~tv~l~~~~~~------------------------- 211 (839)
.......+.... ++.....++ .|+|++ ..++..+.|++|++|+....
T Consensus 200 ~~~~~~~~~~~~-~h~~~i~~~---~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (351)
T 3f3f_A 200 KDGKLHVAAKLP-GHKSLIRSI---SWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMD 275 (351)
T ss_dssp TTSCEEEEEECC-CCCSCEEEE---EECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------
T ss_pred CCCceeeeeecC-CCCcceeEE---EECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccc
Confidence 333322221100 122222333 466687 78999999999999997642
Q ss_pred ---------------------c-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcc
Q 003205 212 ---------------------Q-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPV 251 (839)
Q Consensus 212 ---------------------~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l 251 (839)
. ..|.++|..++|||+|++||+++.||+|.||+.+..+.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 276 AQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp ---------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred cccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence 1 357789999999999999999999999999997765544
No 105
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.47 E-value=4.7e-13 Score=146.43 Aligned_cols=158 Identities=11% Similarity=0.072 Sum_probs=115.8
Q ss_pred CCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeCC---CCccccCCCCCccccccCeEEEEEECC--eEEEE
Q 003205 75 GVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIH---AELIEPNASMGKECFEENVVECVFWGN--GVVCV 148 (839)
Q Consensus 75 G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~---G~~~~~~~g~~~~~~~~~V~~~~~~~~--G~v~~ 148 (839)
|+++.++..|. +.|.++.|+|++. |++++.||+|++|++. ++......+| ...|..+.+.++ |..++
T Consensus 1 G~~~~~~~~h~--~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~l~ 73 (379)
T 3jrp_A 1 GSMVVIANAHN--ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH-----EGPVWRVDWAHPKFGTILA 73 (379)
T ss_dssp ----CCEEECC--CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC-----SSCEEEEEECCGGGCSEEE
T ss_pred CCccEEecCCc--ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCC-----CCcEEEEEeCCCCCCCEEE
Confidence 67888999999 9999999999997 5788899999999874 3344556677 677998898765 77777
Q ss_pred ecCCe-EEEEecCCCce---EEEcCCCCCCCCCceEEEeCCCCCCC--CcEEEEEEeCCeEEEEecCCcc-------ccc
Q 003205 149 TEANR-YFCMADFATMK---VCELARPEVEELPHCVAVIEPKYTMT--GSVEVLIGTDAGILMLDEDGVQ-------KVD 215 (839)
Q Consensus 149 t~~~~-~~~v~~~~~~~---~~~l~~~~~~~~~~~w~vi~~~~S~~--~~~~v~~s~d~tv~l~~~~~~~-------~~~ 215 (839)
+.+.+ ...+|++.... ...+.. .....+++ .|+|+ +..++..+.|++|++|+..... ..+
T Consensus 74 s~~~dg~v~iwd~~~~~~~~~~~~~~----~~~~v~~~---~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 146 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGRWSQIAVHAV----HSASVNSV---QWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH 146 (379)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECC----CSSCEEEE---EECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECC
T ss_pred EeccCCEEEEEEcCCCceeEeeeecC----CCcceEEE---EeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCC
Confidence 75432 23455554443 222221 22233444 45668 8999999999999999987542 467
Q ss_pred CCCceEEEECC-------------CCcEEEEeecCCeEEEEecC
Q 003205 216 DTLSQKMAVSP-------------NGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 216 ~~~i~~ia~Sp-------------ng~~iA~~~~~g~i~i~ssd 246 (839)
..++..++++| +|+++|+++.||+|.+|+..
T Consensus 147 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 190 (379)
T 3jrp_A 147 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN 190 (379)
T ss_dssp TTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEE
T ss_pred CCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEec
Confidence 88999999999 79999999999999999754
No 106
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.47 E-value=5.8e-12 Score=138.74 Aligned_cols=189 Identities=11% Similarity=0.023 Sum_probs=122.3
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC-CCceeEEEecCCCCCeEEEeecCCCeE--EEEEeCCe
Q 003205 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISETVWKNPGGRLIGMSWSEDQTL--ICVVQDGT 109 (839)
Q Consensus 33 l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G~ll~ti~~~~~~~~I~~~~fs~de~L--v~v~~dGt 109 (839)
-....++++|+|..+|+.. +..++||+.. |+.+.+.. . +.+..+.|+++..+ ++.+.|++
T Consensus 20 ~~V~~v~fs~dg~~la~g~-------------~~~~~iw~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~d~~ 82 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILST-------------LKSFEIYNVHPVAHIMSQE--M--RHLSKVRMLHRTNYVAFVTGVKEV 82 (355)
T ss_dssp CCCCEEEECTTSSEEEEEC-------------SSEEEEEEETTEEEEEEEE--C--SCCCEEEECTTSSEEEEECSSTTE
T ss_pred CceEEEEECCCCCEEEEEc-------------CCEEEEEecCCcceeeeee--c--CCeEEEEEcCCCCEEEEEECCccE
Confidence 3567999999999999885 3457899954 33333322 2 33555566665553 45677889
Q ss_pred EEEEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCc-eE-E----------------EcCC
Q 003205 110 VYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATM-KV-C----------------ELAR 170 (839)
Q Consensus 110 v~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~-~~-~----------------~l~~ 170 (839)
|++||. .|+.... +.+ ...|..+.+.++++++.+ ++.+ .++++... .. . -++.
T Consensus 83 v~iWd~~~~~~~~~-~~~-----~~~v~~v~~~~~~~~~~~-~~~i-~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~s 154 (355)
T 3vu4_A 83 VHIWDDVKKQDVSR-IKV-----DAPVKDLFLSREFIVVSY-GDVI-SVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSN 154 (355)
T ss_dssp EEEEETTTTEEEEE-EEC-----SSCEEEEEECSSEEEEEE-TTEE-EEEESSTTCCBSSCCEEEEEEEEEETTEEEEEE
T ss_pred EEEEECCCCcEEEE-EEC-----CCceEEEEEcCCEEEEEE-cCEE-EEEECCCCceeeEEeccCCceEEEEccEEEEeC
Confidence 999986 4655332 223 446788888877766654 3333 23333322 00 0 0000
Q ss_pred CCCCCCCceEEE--------------------------------eCCCCCCCCcEEEEEEeCCe-EEEEecCCcc-----
Q 003205 171 PEVEELPHCVAV--------------------------------IEPKYTMTGSVEVLIGTDAG-ILMLDEDGVQ----- 212 (839)
Q Consensus 171 ~~~~~~~~~w~v--------------------------------i~~~~S~~~~~~v~~s~d~t-v~l~~~~~~~----- 212 (839)
...++....|.+ ....|||+|..++..+.|++ |++||.....
T Consensus 155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~ 234 (355)
T 3vu4_A 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREF 234 (355)
T ss_dssp SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 000011112211 11248889999999999999 9999987433
Q ss_pred c-c-cCCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 213 K-V-DDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 213 ~-~-~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
. + +.++|..++|||+|+++|+++.||+|+||+..
T Consensus 235 ~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 235 RRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp ECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred EcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence 2 3 88899999999999999999999999999854
No 107
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.45 E-value=9.6e-12 Score=141.29 Aligned_cols=209 Identities=13% Similarity=0.061 Sum_probs=148.0
Q ss_pred CCEEEEcCCCCeE-EEEecCchhhhhhcccCCceEEEEcCC---CCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCe
Q 003205 35 RNKVACAPFGGPI-AVIRDDSKIVQLYAESALRKLRIFNSA---GVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGT 109 (839)
Q Consensus 35 ~~~va~sp~Gg~I-A~~~d~~k~~~~~~~~~~~~I~iy~~~---G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGt 109 (839)
...++++|+|..+ |+.. .+++|+||+.. |+.+.++..+...+.|.++.|+|++. |++++.||.
T Consensus 105 v~~~~~s~d~~~l~~~~~------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~ 172 (450)
T 2vdu_B 105 IRNLRLTSDESRLIACAD------------SDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGD 172 (450)
T ss_dssp EEEEEECTTSSEEEEEEG------------GGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred eEEEEEcCCCCEEEEEEC------------CCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCc
Confidence 5688999999996 6654 57999999954 88899887543227899999999997 678999999
Q ss_pred EEEEeC-CCCccc----cCCCCCccccccCeEEEEEECC---eEEEEecCCe-EEEEecCCCce-EEEcCCCCCCCCCce
Q 003205 110 VYRYNI-HAELIE----PNASMGKECFEENVVECVFWGN---GVVCVTEANR-YFCMADFATMK-VCELARPEVEELPHC 179 (839)
Q Consensus 110 v~l~~~-~G~~~~----~~~g~~~~~~~~~V~~~~~~~~---G~v~~t~~~~-~~~v~~~~~~~-~~~l~~~~~~~~~~~ 179 (839)
+++|++ .|+... ...+| ...|.++.++++ |..+++++.+ ...+|++.... ...+.. ++....
T Consensus 173 v~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~h~~~v 244 (450)
T 2vdu_B 173 VYSIDINSIPEEKFTQEPILGH-----VSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF---GHKHFV 244 (450)
T ss_dssp EEEEETTSCCCSSCCCCCSEEC-----SSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC---CCSSCE
T ss_pred EEEEecCCcccccccceeeecc-----cCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec---CCCCce
Confidence 999985 444332 45566 677999999999 9777776432 34455554332 222221 122233
Q ss_pred EEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----c-------------------------ccCCCceEEEECCCCc
Q 003205 180 VAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----K-------------------------VDDTLSQKMAVSPNGN 229 (839)
Q Consensus 180 w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~-------------------------~~~~~i~~ia~Spng~ 229 (839)
+++ .|| +|..+++.+.|++|++||..... . .....+..|+++|+|+
T Consensus 245 ~~~---~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 320 (450)
T 2vdu_B 245 SSI---CCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP 320 (450)
T ss_dssp EEE---EEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred EEE---EEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence 333 677 99999999999999999977432 1 1234688999999999
Q ss_pred EEEEee-cCCeEEEEec--CCC---CccccccCCCCCCCCceeeec
Q 003205 230 FVACFT-HDGRLVVNNT--NFS---SPVIDESCESALPPEQIAWCG 269 (839)
Q Consensus 230 ~iA~~~-~~g~i~i~ss--d~~---~~l~e~~~~~~~~p~~~~WcG 269 (839)
++++.+ .+|+|.||+. .-+ ..+..+..+ ..+..+.|..
T Consensus 321 ~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~--~~v~~~~~~~ 364 (450)
T 2vdu_B 321 FVAFFVEATKCIIILEMSEKQKGDLALKQIITFP--YNVISLSAHN 364 (450)
T ss_dssp EEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS--SCEEEEEEET
T ss_pred EEEEEECCCCeEEEEEeccCCCCceeeccEeccC--CceEEEEecC
Confidence 999999 8999999987 323 222223333 4566777776
No 108
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.45 E-value=9.2e-12 Score=140.40 Aligned_cols=182 Identities=14% Similarity=0.178 Sum_probs=128.6
Q ss_pred CCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCC---eEEEEeCC-CC
Q 003205 44 GGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDG---TVYRYNIH-AE 118 (839)
Q Consensus 44 Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dG---tv~l~~~~-G~ 118 (839)
|+.||...... .+...+.|++|+.+|..+..+..+. +.+.++.|||||+ |++++.|+ +|++|++. |+
T Consensus 143 ~~~l~~~s~~~------~~~~~~~i~i~d~~g~~~~~l~~~~--~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~ 214 (415)
T 2hqs_A 143 RTRIAYVVQTN------GGQFPYELRVSDYDGYNQFVVHRSP--QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA 214 (415)
T ss_dssp TCEEEEEEECS------SSSCCEEEEEEETTSCSCEEEEEES--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred CCEEEEEEecC------CCCccceEEEEcCCCCCCEEEeCCC--CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc
Confidence 66777765310 0001279999999999999998888 8999999999997 67788775 99999975 54
Q ss_pred ccccCCCCCccccccCeEEEEEECCeEEEE-ec--CC--eEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcE
Q 003205 119 LIEPNASMGKECFEENVVECVFWGNGVVCV-TE--AN--RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSV 193 (839)
Q Consensus 119 ~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~-t~--~~--~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~ 193 (839)
... ..++ ...+..+.|+|+|..++ +. ++ ++|. ++..+.....+.. .... +..+.|||||+.
T Consensus 215 ~~~-l~~~-----~~~~~~~~~spdg~~la~~~~~~g~~~i~~-~d~~~~~~~~l~~----~~~~---~~~~~~spdg~~ 280 (415)
T 2hqs_A 215 VRQ-VASF-----PRHNGAPAFSPDGSKLAFALSKTGSLNLYV-MDLASGQIRQVTD----GRSN---NTEPTWFPDSQN 280 (415)
T ss_dssp EEE-EECC-----SSCEEEEEECTTSSEEEEEECTTSSCEEEE-EETTTCCEEECCC----CSSC---EEEEEECTTSSE
T ss_pred EEE-eecC-----CCcccCEEEcCCCCEEEEEEecCCCceEEE-EECCCCCEEeCcC----CCCc---ccceEECCCCCE
Confidence 433 3344 45688899999997544 43 22 3554 4555555555542 1111 334578889999
Q ss_pred EEEEEeC-C--eEEEEecCCcc----cccCCCceEEEECCCCcEEEEeecC---CeEEEEecCC
Q 003205 194 EVLIGTD-A--GILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHD---GRLVVNNTNF 247 (839)
Q Consensus 194 ~v~~s~d-~--tv~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~~~~---g~i~i~ssd~ 247 (839)
+++.+.+ + .|++|+..+.. ..+...+..++|||||++||+.+.+ ++|++|+.+-
T Consensus 281 l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~ 344 (415)
T 2hqs_A 281 LAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 344 (415)
T ss_dssp EEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred EEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence 9988874 3 78899987643 2345668899999999999998864 4799998663
No 109
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.44 E-value=2.9e-12 Score=143.20 Aligned_cols=196 Identities=11% Similarity=0.070 Sum_probs=125.9
Q ss_pred CCCEEEEcC--------CCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCe--EE
Q 003205 34 SRNKVACAP--------FGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT--LI 102 (839)
Q Consensus 34 ~~~~va~sp--------~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~--Lv 102 (839)
....|+++| +|..||..+ .|++|+||+. .|..+.++..+. +.+.++.|+|++. |+
T Consensus 138 ~v~~v~~~p~~~~~~~~d~~~las~s------------~D~tv~~Wd~~~~~~~~~~~~~~--~~v~~v~~~p~~~~~l~ 203 (393)
T 4gq1_A 138 FVNDIDIADVYSADNRLAEQVIASVG------------DDCTLIIWRLTDEGPILAGYPLS--SPGISVQFRPSNPNQLI 203 (393)
T ss_dssp CEEEEEEEEEECTTCSEEEEEEEEEE------------TTSEEEEEEEETTEEEEEEEECS--SCEEEEEEETTEEEEEE
T ss_pred ceEEEEEccccccccCCCCCEEEEEE------------CCCeEEEEECCCCceeeeecCCC--CCcEEEEECCCCCceEE
Confidence 456899998 899999997 5899999995 677788877787 8999999999873 68
Q ss_pred EEEeCCeEEEEeCC-CCcccc-------------------------CCCCCccccccCeEEEEEE-CCeEEEEecCC-eE
Q 003205 103 CVVQDGTVYRYNIH-AELIEP-------------------------NASMGKECFEENVVECVFW-GNGVVCVTEAN-RY 154 (839)
Q Consensus 103 ~v~~dGtv~l~~~~-G~~~~~-------------------------~~g~~~~~~~~~V~~~~~~-~~G~v~~t~~~-~~ 154 (839)
+++.||+|++||+. |+.... ..+| ...|..+.++ ++|..+++... +-
T Consensus 204 ~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-----~~~v~~v~~~~~dg~~l~s~s~d~~ 278 (393)
T 4gq1_A 204 VGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGI-----ASSLANVRWIGSDGSGILAMCKSGA 278 (393)
T ss_dssp EEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CC-----SSSCSEEEEETTTTCEEEEECTTSE
T ss_pred ecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccc-----cccceeeeeecCCCCEEEEEeCCCC
Confidence 99999999999864 322111 1122 4557778888 48887777643 34
Q ss_pred EEEecCCC-ceEEEcCCCCC-----CCCCceEEE------eCCCCCC--CCcEEEEEEeCCeEEEEecCCcc-----ccc
Q 003205 155 FCMADFAT-MKVCELARPEV-----EELPHCVAV------IEPKYTM--TGSVEVLIGTDAGILMLDEDGVQ-----KVD 215 (839)
Q Consensus 155 ~~v~~~~~-~~~~~l~~~~~-----~~~~~~w~v------i~~~~S~--~~~~~v~~s~d~tv~l~~~~~~~-----~~~ 215 (839)
..+|++.. +....+..... ...|..... +...++| ++..++..+.|++|++|+..... ..+
T Consensus 279 i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~ 358 (393)
T 4gq1_A 279 WLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQL 358 (393)
T ss_dssp EEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEEC
T ss_pred EEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCC
Confidence 55666542 22222221100 000111110 0001222 33455555679999999977433 457
Q ss_pred CCCceEEEECCCCcEEEEeecCCeEEEEecCCC
Q 003205 216 DTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFS 248 (839)
Q Consensus 216 ~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~ 248 (839)
..+|..|+|||||++||+++++|.+.+.-..|.
T Consensus 359 ~~~V~svafspdG~~LA~as~~Gv~lvrL~gf~ 391 (393)
T 4gq1_A 359 GMPIVDFCWHQDGSHLAIATEGSVLLTRLMGFT 391 (393)
T ss_dssp SSCEEEEEECTTSSEEEEEESSEEEEEEEGGGC
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEEeCcc
Confidence 789999999999999999998887544433443
No 110
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.44 E-value=1.7e-11 Score=135.66 Aligned_cols=236 Identities=12% Similarity=0.095 Sum_probs=152.9
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCeE-EEEE-eCCeEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTL-ICVV-QDGTVY 111 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~-~dGtv~ 111 (839)
...++++|+|..|++.. ..+++|++|+. .|+++.++..+ +.+.++.|+|+++. ++.. .||+|+
T Consensus 34 ~~~~~~s~dg~~l~~~~-----------~~d~~i~v~d~~~~~~~~~~~~~---~~v~~~~~spdg~~l~~~~~~~~~v~ 99 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVAN-----------AHSNDVSIIDTATNNVIATVPAG---SSPQGVAVSPDGKQVYVTNMASSTLS 99 (391)
T ss_dssp EEEEEECTTSSEEEEEE-----------GGGTEEEEEETTTTEEEEEEECS---SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred cceEEECCCCCEEEEEC-----------CCCCeEEEEECCCCeEEEEEECC---CCccceEECCCCCEEEEEECCCCEEE
Confidence 45889999999886664 24789999996 78888888754 58999999999984 3443 579999
Q ss_pred EEeCC-CCccccCCCCCccccccCeEEEEEECCeEEE-EecC-CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCC
Q 003205 112 RYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVC-VTEA-NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYT 188 (839)
Q Consensus 112 l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~-~t~~-~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S 188 (839)
+|++. |+...... + ...+..+.++++|..+ ++.. .....+++..+........ .+..+.+ + .|+
T Consensus 100 v~d~~~~~~~~~~~-~-----~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~--~---~~~ 166 (391)
T 1l0q_A 100 VIDTTSNTVAGTVK-T-----GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS--VGRSPKG--I---AVT 166 (391)
T ss_dssp EEETTTTEEEEEEE-C-----SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CCSSEEE--E---EEC
T ss_pred EEECCCCeEEEEEe-C-----CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe--cCCCcce--E---EEC
Confidence 99975 44433222 2 3467888998887543 4543 3344455665443322211 1122322 2 356
Q ss_pred CCCcEEEEE-EeCCeEEEEecCCcc----cccCCCceEEEECCCCcEEEEee---cCCeEEEEecCCCCccccccCCCCC
Q 003205 189 MTGSVEVLI-GTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFT---HDGRLVVNNTNFSSPVIDESCESAL 260 (839)
Q Consensus 189 ~~~~~~v~~-s~d~tv~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~~---~~g~i~i~ssd~~~~l~e~~~~~~~ 260 (839)
|+|+.++.. +.+++|++||..... ..+...+..+++||+|++++..+ .+++|++|+..-.+.+..+..+.
T Consensus 167 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-- 244 (391)
T 1l0q_A 167 PDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-- 244 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS--
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC--
Confidence 699877544 458999999987644 23455688999999999999888 58899999865344333332221
Q ss_pred CCCceeeecCceEEEEecCEEEEEcCCCCceEeccCCCeE-EeecCCc-eEEEccCcceeeeccchh
Q 003205 261 PPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLV-LIPECDG-VRILSNSSMEFLQRVPAS 325 (839)
Q Consensus 261 ~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~~~-l~~E~DG-vRIit~~~~~~l~~Vp~~ 325 (839)
.|. .+.|.+++..+ +....|| |++|.....+.++.++.+
T Consensus 245 ~~~--------------------------~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~ 285 (391)
T 1l0q_A 245 DPA--------------------------GIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVG 285 (391)
T ss_dssp SEE--------------------------EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred Ccc--------------------------EEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence 122 24444455444 3445566 777777777777666543
No 111
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.43 E-value=3.8e-11 Score=136.24 Aligned_cols=245 Identities=16% Similarity=0.134 Sum_probs=154.9
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeec--CCCe-EEEEEeCCe
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWS--EDQT-LICVVQDGT 109 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs--~de~-Lv~v~~dGt 109 (839)
....++++|+| .+++.. .+++|++|+. +|+.+.++..|. +.|.++.|+ +++. +++++.||+
T Consensus 164 ~V~~l~~~~~~-~l~s~s------------~dg~i~vwd~~~~~~~~~~~~h~--~~v~~l~~~~~~~~~~l~s~s~d~~ 228 (464)
T 3v7d_B 164 GVWALKYAHGG-ILVSGS------------TDRTVRVWDIKKGCCTHVFEGHN--STVRCLDIVEYKNIKYIVTGSRDNT 228 (464)
T ss_dssp CEEEEEECSTT-EEEEEE------------TTSCEEEEETTTTEEEEEECCCS--SCEEEEEEEESSSCEEEEEEETTSC
T ss_pred CEEEEEEcCCC-EEEEEe------------CCCCEEEEECCCCcEEEEECCCC--CccEEEEEecCCCCCEEEEEcCCCc
Confidence 44567777776 666664 6899999995 688999999888 999999998 4655 689999999
Q ss_pred EEEEeCCCCc------------------------cccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCceE
Q 003205 110 VYRYNIHAEL------------------------IEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKV 165 (839)
Q Consensus 110 v~l~~~~G~~------------------------~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~~ 165 (839)
|++|++.... .....+| ...|..+...++-++..+.++.+ .++++.....
T Consensus 229 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~l~~~~~d~~i-~vwd~~~~~~ 302 (464)
T 3v7d_B 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH-----MASVRTVSGHGNIVVSGSYDNTL-IVWDVAQMKC 302 (464)
T ss_dssp EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC-----SSCEEEEEEETTEEEEEETTSCE-EEEETTTTEE
T ss_pred EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc-----cceEEEEcCCCCEEEEEeCCCeE-EEEECCCCcE
Confidence 9999875332 1123344 44455543333333333344554 4566654432
Q ss_pred -EEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCe
Q 003205 166 -CELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGR 239 (839)
Q Consensus 166 -~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~ 239 (839)
..+.. +....+++ .|+|+|..++..+.|++|++|+..... ..+..++..++++ |+++++++.||+
T Consensus 303 ~~~~~~----~~~~v~~~---~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~ 373 (464)
T 3v7d_B 303 LYILSG----HTDRIYST---IYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS 373 (464)
T ss_dssp EEEECC----CSSCEEEE---EEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE
T ss_pred EEEecC----CCCCEEEE---EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc
Confidence 33321 22333333 466699999999999999999986433 5688899999998 579999999999
Q ss_pred EEEEecCCCCccccccCCCCCCCCceeee--------cCceEEEEecC----EEE--EEcCCCC--ceEeccCCCeEEee
Q 003205 240 LVVNNTNFSSPVIDESCESALPPEQIAWC--------GMDSVLLYWND----MLV--MVAPQAE--PVQYFYDEPLVLIP 303 (839)
Q Consensus 240 i~i~ssd~~~~l~e~~~~~~~~p~~~~Wc--------G~d~vv~~~~~----~l~--lig~~~~--~v~f~~~~~~~l~~ 303 (839)
|.+|+..-......+.. ......+.|. |.|..+..|+- .+. +.++.+. .+.|. +...++..
T Consensus 374 v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~ 450 (464)
T 3v7d_B 374 IRGWDANDYSRKFSYHH--TNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAV 450 (464)
T ss_dssp EEEEETTTCCEEEEEEC--TTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEE
T ss_pred EEEEECCCCceeeeecC--CCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEE
Confidence 99998764443333221 2233334443 45666666752 221 2333333 44553 23344555
Q ss_pred cCCceEEE
Q 003205 304 ECDGVRIL 311 (839)
Q Consensus 304 E~DGvRIi 311 (839)
+-||..++
T Consensus 451 ~~~g~~~i 458 (464)
T 3v7d_B 451 EKDGQSFL 458 (464)
T ss_dssp EETTEEEE
T ss_pred EeCCeEEE
Confidence 56675443
No 112
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.42 E-value=1.4e-12 Score=145.85 Aligned_cols=230 Identities=10% Similarity=0.054 Sum_probs=130.6
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCc------eeEEEecCCCCCeEEEeecC--------CCe-E
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVL------ISETVWKNPGGRLIGMSWSE--------DQT-L 101 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~l------l~ti~~~~~~~~I~~~~fs~--------de~-L 101 (839)
..+++|++..+|... .|++|+||+..+.. +.++.+|. +.|.++.|+| |++ |
T Consensus 94 ~~~~~~~~~~las~~------------~d~~v~lw~~~~~~~~~~~~~~~~~gH~--~~v~~v~~~p~~~~~~~~d~~~l 159 (393)
T 4gq1_A 94 VNSSPVYSLFLACVC------------QDNTVRLIITKNETIITQHVLGGKSGHH--NFVNDIDIADVYSADNRLAEQVI 159 (393)
T ss_dssp ---CCEEEEEEEEEE------------TTSCEEEEEEETTEEEEEEEECTTTSCS--SCEEEEEEEEEECTTCSEEEEEE
T ss_pred eeecCCCCCEEEEEe------------CCCcEEEEECCCCccceeeeecccCCCC--CceEEEEEccccccccCCCCCEE
Confidence 344555666677765 68999999976542 33456787 8999999997 777 5
Q ss_pred EEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEEECCeE-EEEecCC-eEEEEecCCCceEE-EcCCCCCCCCC
Q 003205 102 ICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGV-VCVTEAN-RYFCMADFATMKVC-ELARPEVEELP 177 (839)
Q Consensus 102 v~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~-v~~t~~~-~~~~v~~~~~~~~~-~l~~~~~~~~~ 177 (839)
++++.|+|||+||+ .+.......+| ...|..+.|+|+|- .+++++. ....+|++..+... .+.........
T Consensus 160 as~s~D~tv~~Wd~~~~~~~~~~~~~-----~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~ 234 (393)
T 4gq1_A 160 ASVGDDCTLIIWRLTDEGPILAGYPL-----SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP 234 (393)
T ss_dssp EEEETTSEEEEEEEETTEEEEEEEEC-----SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred EEEECCCeEEEEECCCCceeeeecCC-----CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence 89999999999996 34444445566 66789999999763 5666543 35567776543211 11100000000
Q ss_pred ceEEEe------------------CCC-CCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECC-------
Q 003205 178 HCVAVI------------------EPK-YTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSP------- 226 (839)
Q Consensus 178 ~~w~vi------------------~~~-~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Sp------- 226 (839)
.++..- ... +++||..++..+.|+++.+|+..... ..+...+..+.++|
T Consensus 235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 314 (393)
T 4gq1_A 235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISL 314 (393)
T ss_dssp CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECS
T ss_pred eEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccc
Confidence 001000 001 23577888877788888888765322 12222233333333
Q ss_pred -------------CCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCC--ce
Q 003205 227 -------------NGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAE--PV 291 (839)
Q Consensus 227 -------------ng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~--~v 291 (839)
++.++|+++.||+|++|+.+-++.+ ..+.++.+. .+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~-----------------------------~~~~~~~~~V~sv 365 (393)
T 4gq1_A 315 FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN-----------------------------SIPIQLGMPIVDF 365 (393)
T ss_dssp SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC-----------------------------EEEEECSSCEEEE
T ss_pred cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE-----------------------------EEecCCCCcEEEE
Confidence 3335666666777777764422222 122233332 57
Q ss_pred EeccCCCeEEeecCCceEEEccC
Q 003205 292 QYFYDEPLVLIPECDGVRILSNS 314 (839)
Q Consensus 292 ~f~~~~~~~l~~E~DGvRIit~~ 314 (839)
.|++|+..+++..-||+.+|...
T Consensus 366 afspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 366 CWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp EECTTSSEEEEEESSEEEEEEEG
T ss_pred EEcCCCCEEEEEeCCCeEEEEEe
Confidence 78888888888888898777543
No 113
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.42 E-value=4.3e-12 Score=157.23 Aligned_cols=148 Identities=13% Similarity=0.122 Sum_probs=103.2
Q ss_pred CCeEEEeecCCCe-EEEEEeCCeEEEEeCCCCccccC------------CCCCccccccCeEEEEEECCeEEEEecCCe-
Q 003205 88 GRLIGMSWSEDQT-LICVVQDGTVYRYNIHAELIEPN------------ASMGKECFEENVVECVFWGNGVVCVTEANR- 153 (839)
Q Consensus 88 ~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~G~~~~~~------------~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~- 153 (839)
..+..+.|+|+++ |++++.||+||+||+.+...... .+| ...|..+.|+++|..+++++.+
T Consensus 436 ~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h-----~~~V~svafspdg~~LAsgs~Dg 510 (902)
T 2oaj_A 436 RTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAK-----ELAVDKISFAAETLELAVSIETG 510 (902)
T ss_dssp CCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSS-----SCCEEEEEEETTTTEEEEEETTS
T ss_pred CCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCC-----CCceeEEEecCCCCeEEEEecCc
Confidence 3455667889997 58999999999999754322111 155 5679999999999888886432
Q ss_pred EEEEecCCCceE-------------------------------------------EEcCCCCCCCCCceEEEeCCCCCCC
Q 003205 154 YFCMADFATMKV-------------------------------------------CELARPEVEELPHCVAVIEPKYTMT 190 (839)
Q Consensus 154 ~~~v~~~~~~~~-------------------------------------------~~l~~~~~~~~~~~w~vi~~~~S~~ 190 (839)
.+.+|++.+... ..+... .++....|++ .||||
T Consensus 511 tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l-~~h~~~V~sv---afSpd 586 (902)
T 2oaj_A 511 DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAV-HANKGKTSAI---NNSNI 586 (902)
T ss_dssp CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEE-CCCSCSEEEE---EECBT
T ss_pred EEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEE-EcCCCcEEEE---EecCC
Confidence 223343332100 001000 0022233444 58899
Q ss_pred CcEEEEEEeCCeEEEEecCCcc----------c-ccCCCceEEEEC-----CCC---cEEEEeecCCeEEEEec
Q 003205 191 GSVEVLIGTDAGILMLDEDGVQ----------K-VDDTLSQKMAVS-----PNG---NFVACFTHDGRLVVNNT 245 (839)
Q Consensus 191 ~~~~v~~s~d~tv~l~~~~~~~----------~-~~~~~i~~ia~S-----png---~~iA~~~~~g~i~i~ss 245 (839)
| .++.++.|++|++||.++.. . +|.+.|..|+|| ||| +.||+++.||+|.+|+.
T Consensus 587 G-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 587 G-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp S-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred c-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 9 99999999999999988742 1 567779999999 886 89999999999999985
No 114
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.42 E-value=8.6e-12 Score=137.83 Aligned_cols=270 Identities=10% Similarity=0.067 Sum_probs=175.3
Q ss_pred CCceEEEEcC-CCCceeEEEecCCCCCeEEEeecC-CCe-EEEEEeCCeEEEEeCCCC-ccccC-------------CCC
Q 003205 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSE-DQT-LICVVQDGTVYRYNIHAE-LIEPN-------------ASM 126 (839)
Q Consensus 64 ~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~-de~-Lv~v~~dGtv~l~~~~G~-~~~~~-------------~g~ 126 (839)
.+..+++|+. .++....+..|. +.|.++.|+| ++. |++++.||+|++|++... ..... .+|
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~--~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHG--GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH 98 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCS--SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCC
T ss_pred ccCcceeeccccCcceeeeeccC--CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccC
Confidence 3566888885 467777788888 9999999999 887 579999999999987543 22221 135
Q ss_pred CccccccCeEEEEEEC-CeEEEEecC-CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEE
Q 003205 127 GKECFEENVVECVFWG-NGVVCVTEA-NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGIL 204 (839)
Q Consensus 127 ~~~~~~~~V~~~~~~~-~G~v~~t~~-~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~ 204 (839)
...|..+.+.+ +|..+++.+ .....+|++.+........ .......+.-..+++++..++..+.++.|+
T Consensus 99 -----~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (408)
T 4a11_B 99 -----RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN----FEETVYSHHMSPVSTKHCLVAVGTRGPKVQ 169 (408)
T ss_dssp -----SSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECSSCSSCCEEEEEESSSSEE
T ss_pred -----CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----CCCceeeeEeecCCCCCcEEEEEcCCCeEE
Confidence 67799999998 665555543 3345567776544333221 112222332223455777999999999999
Q ss_pred EEecCCcc-----cccCCCceEEEECCCCc-EEEEeecCCeEEEEecCCCC-ccccc---------------cCCCCCCC
Q 003205 205 MLDEDGVQ-----KVDDTLSQKMAVSPNGN-FVACFTHDGRLVVNNTNFSS-PVIDE---------------SCESALPP 262 (839)
Q Consensus 205 l~~~~~~~-----~~~~~~i~~ia~Spng~-~iA~~~~~g~i~i~ssd~~~-~l~e~---------------~~~~~~~p 262 (839)
+|+..... ..+.++|..++++|+|+ .+|+++.||+|.+|+..-.. .+..+ ..+ ...+
T Consensus 170 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v 248 (408)
T 4a11_B 170 LCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAH-NGKV 248 (408)
T ss_dssp EEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSC-SSCE
T ss_pred EEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccc-cCce
Confidence 99987543 46788999999999999 59999999999999865332 22222 111 2334
Q ss_pred Cceeee---------cCceEEEEecC-----EEEEEcC------CCCceEecc-CCCeEEeecCCc-eEEEccCcceeee
Q 003205 263 EQIAWC---------GMDSVLLYWND-----MLVMVAP------QAEPVQYFY-DEPLVLIPECDG-VRILSNSSMEFLQ 320 (839)
Q Consensus 263 ~~~~Wc---------G~d~vv~~~~~-----~l~lig~------~~~~v~f~~-~~~~~l~~E~DG-vRIit~~~~~~l~ 320 (839)
..+.|. +.|..+..|+- ...+.++ .+....... .+..++..-.|| |+||.....+.+.
T Consensus 249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 328 (408)
T 4a11_B 249 NGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT 328 (408)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE
T ss_pred eEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee
Confidence 456665 34444444531 0111110 000111111 123444444565 9999999999999
Q ss_pred ccchhhHhhhccCCCChhhhHHHHH
Q 003205 321 RVPASTEQIFAIGSTSPAALLYDAL 345 (839)
Q Consensus 321 ~Vp~~~~~vf~igS~~pga~L~~A~ 345 (839)
.+..+...|..+..++.+.+|+.+.
T Consensus 329 ~~~~~~~~v~~~~~s~~~~~l~s~~ 353 (408)
T 4a11_B 329 MLKGHYKTVDCCVFQSNFQELYSGS 353 (408)
T ss_dssp EECCCSSCEEEEEEETTTTEEEEEE
T ss_pred eeccCCCeEEEEEEcCCCCEEEEEC
Confidence 9999988888888887777777554
No 115
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.41 E-value=1.1e-11 Score=139.29 Aligned_cols=192 Identities=11% Similarity=0.090 Sum_probs=130.6
Q ss_pred CCCCEEEEcCCC--CeEEEEecCchhhhhhcccCCceEEEEcCCCCce--------------------------------
Q 003205 33 LSRNKVACAPFG--GPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLI-------------------------------- 78 (839)
Q Consensus 33 l~~~~va~sp~G--g~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll-------------------------------- 78 (839)
-....++++|+| ..+++.. .|++|++|+......
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s------------~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 161 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLST------------NDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMD 161 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEE------------CSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEE
T ss_pred CceEEEEEcCCCCcceEEEeC------------CCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchh
Confidence 346689999998 6788876 589999999654221
Q ss_pred --------eEE-EecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCC--CCccc-------cCCCCCccccccCeEEEEE
Q 003205 79 --------SET-VWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIH--AELIE-------PNASMGKECFEENVVECVF 140 (839)
Q Consensus 79 --------~ti-~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~--G~~~~-------~~~g~~~~~~~~~V~~~~~ 140 (839)
..+ ..|. +.|.++.|+|++++++...||+|++|++. ++... ...+| ...|..+.+
T Consensus 162 ~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~ 234 (447)
T 3dw8_B 162 LMVEASPRRIFANAHT--YHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEEL-----TEVITAAEF 234 (447)
T ss_dssp EEEEEEEEEEECSCCS--SCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGC-----CCCEEEEEE
T ss_pred eeeeccceEEeccCCC--cceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeeccccccccc-----CcceEEEEE
Confidence 122 3455 88999999999986433489999999987 33322 23355 667999999
Q ss_pred ECCe-EEEEec--CCeEEEEecCCCce-----EEEcCCCCCCCCC-----------ceEEEeCCCCCCCCcEEEEEEeCC
Q 003205 141 WGNG-VVCVTE--ANRYFCMADFATMK-----VCELARPEVEELP-----------HCVAVIEPKYTMTGSVEVLIGTDA 201 (839)
Q Consensus 141 ~~~G-~v~~t~--~~~~~~v~~~~~~~-----~~~l~~~~~~~~~-----------~~w~vi~~~~S~~~~~~v~~s~d~ 201 (839)
+++| ..++++ ++.+ .+|++.... ...+... ..+ ...++ .|||+|..++..+. +
T Consensus 235 ~p~~~~~l~s~~~dg~i-~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~---~~s~~g~~l~~~~~-~ 306 (447)
T 3dw8_B 235 HPNSCNTFVYSSSKGTI-RLCDMRASALCDRHSKLFEEP---EDPSNRSFFSEIISSISDV---KFSHSGRYMMTRDY-L 306 (447)
T ss_dssp CSSCTTEEEEEETTSCE-EEEETTTCSSSCTTCEEECCC--------CCHHHHHTTCEEEE---EECTTSSEEEEEES-S
T ss_pred CCCCCcEEEEEeCCCeE-EEEECcCCccccceeeEeccC---CCccccccccccCceEEEE---EECCCCCEEEEeeC-C
Confidence 9988 555554 4444 456655433 2333221 110 22333 67779999998888 9
Q ss_pred eEEEEecCC-cc-----cccCCC---------------ceEEEECCCCcEEEEeecCCeEEEEecCCCCcc
Q 003205 202 GILMLDEDG-VQ-----KVDDTL---------------SQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPV 251 (839)
Q Consensus 202 tv~l~~~~~-~~-----~~~~~~---------------i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l 251 (839)
+|++|+... .. ..+... +..++|||+|++||+++.||+|++|+..-++.+
T Consensus 307 ~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 307 SVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp EEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred eEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 999999874 22 222211 224999999999999999999999987655443
No 116
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.40 E-value=2.6e-11 Score=136.70 Aligned_cols=209 Identities=15% Similarity=0.132 Sum_probs=141.6
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EE-EEEeCCe--
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LI-CVVQDGT-- 109 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv-~v~~dGt-- 109 (839)
....+++||+|..||..+.+ ..++.|++|+..+.....+..+. +.+.++.|+|||+ |+ +.+.||.
T Consensus 180 ~v~~~~~Spdg~~la~~s~~---------~~~~~i~~~d~~tg~~~~l~~~~--~~~~~~~~spdg~~la~~~~~~g~~~ 248 (415)
T 2hqs_A 180 PLMSPAWSPDGSKLAYVTFE---------SGRSALVIQTLANGAVRQVASFP--RHNGAPAFSPDGSKLAFALSKTGSLN 248 (415)
T ss_dssp CEEEEEECTTSSEEEEEECT---------TSSCEEEEEETTTCCEEEEECCS--SCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred cceeeEEcCCCCEEEEEEec---------CCCcEEEEEECCCCcEEEeecCC--CcccCEEEcCCCCEEEEEEecCCCce
Confidence 34578999999999998742 13479999998655555676666 8899999999998 55 4444554
Q ss_pred EEEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEe-cC--C--eEEEEecCCCceEEEcCCCCCCCCCceEEEeC
Q 003205 110 VYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVT-EA--N--RYFCMADFATMKVCELARPEVEELPHCVAVIE 184 (839)
Q Consensus 110 v~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t-~~--~--~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~ 184 (839)
|++|++.+.......++ ...+..+.|+++|..++. ++ + ++|.+ +..+.....+.. ... + +..
T Consensus 249 i~~~d~~~~~~~~l~~~-----~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~-d~~~~~~~~l~~----~~~--~-~~~ 315 (415)
T 2hqs_A 249 LYVMDLASGQIRQVTDG-----RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV-NINGGAPQRITW----EGS--Q-NQD 315 (415)
T ss_dssp EEEEETTTCCEEECCCC-----SSCEEEEEECTTSSEEEEEECTTSSCEEEEE-ETTSSCCEECCC----SSS--E-EEE
T ss_pred EEEEECCCCCEEeCcCC-----CCcccceEECCCCCEEEEEECCCCCcEEEEE-ECCCCCEEEEec----CCC--c-ccC
Confidence 88888754333334445 456788899999865444 32 2 45544 444444444432 111 2 344
Q ss_pred CCCCCCCcEEEEEEeC---CeEEEEecCCcc---cccCCCceEEEECCCCcEEEEeecCC---eEEEEecCCCCcccccc
Q 003205 185 PKYTMTGSVEVLIGTD---AGILMLDEDGVQ---KVDDTLSQKMAVSPNGNFVACFTHDG---RLVVNNTNFSSPVIDES 255 (839)
Q Consensus 185 ~~~S~~~~~~v~~s~d---~tv~l~~~~~~~---~~~~~~i~~ia~Spng~~iA~~~~~g---~i~i~ssd~~~~l~e~~ 255 (839)
+.|||||+.++..+.+ .+|++|+..+.. ......+..++|||||+.|++.+.++ .|++|+.+ +.....+.
T Consensus 316 ~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~ 394 (415)
T 2hqs_A 316 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLP 394 (415)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECC
T ss_pred eEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEee
Confidence 5788899999988874 589999987643 11223789999999999999998776 79999877 44444443
Q ss_pred CCCCCCCCceeee
Q 003205 256 CESALPPEQIAWC 268 (839)
Q Consensus 256 ~~~~~~p~~~~Wc 268 (839)
.+ .....+.+|.
T Consensus 395 ~~-~~~v~~~~~~ 406 (415)
T 2hqs_A 395 AT-DGQVKFPAWS 406 (415)
T ss_dssp CS-SSEEEEEEEC
T ss_pred CC-CCCCcCCccc
Confidence 33 2345566664
No 117
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.40 E-value=2.5e-11 Score=136.19 Aligned_cols=249 Identities=9% Similarity=0.015 Sum_probs=161.8
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC-CCceeEE-----EecCCCCCeEEEeecCCCeE-EEEEeCC
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISET-----VWKNPGGRLIGMSWSEDQTL-ICVVQDG 108 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G~ll~ti-----~~~~~~~~I~~~~fs~de~L-v~v~~dG 108 (839)
..++++| ++.+++... .+++|++|+.. |+.+..+ ..|. +.|.++.|++++.+ ++.+.||
T Consensus 126 ~~~~~s~-~~~~~~~~~-----------~~~~i~~~d~~~g~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~s~~~d~ 191 (433)
T 3bws_A 126 KSVRFID-NTRLAIPLL-----------EDEGMDVLDINSGQTVRLSPPEKYKKKL--GFVETISIPEHNELWVSQMQAN 191 (433)
T ss_dssp CCCEESS-SSEEEEEBT-----------TSSSEEEEETTTCCEEEECCCHHHHTTC--CEEEEEEEGGGTEEEEEEGGGT
T ss_pred eEEEEeC-CCeEEEEeC-----------CCCeEEEEECCCCeEeeecCcccccccC--CceeEEEEcCCCEEEEEECCCC
Confidence 4678899 555555542 46889999975 7776633 2444 78999999999985 6778899
Q ss_pred eEEEEeCC-CCccccCCCCCccccccCeEEEEEECCeEEE-Eec--CCeEEEEecCCCceEE-EcCCCCCCCCCceEEEe
Q 003205 109 TVYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVC-VTE--ANRYFCMADFATMKVC-ELARPEVEELPHCVAVI 183 (839)
Q Consensus 109 tv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~-~t~--~~~~~~v~~~~~~~~~-~l~~~~~~~~~~~w~vi 183 (839)
+|++|++. |+......++ ...+..+.+.++|-.+ ++. ++.+ .+++....... .+.. ....+.+
T Consensus 192 ~v~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~i-~~~d~~~~~~~~~~~~-----~~~~~~~- 259 (433)
T 3bws_A 192 AVHVFDLKTLAYKATVDLT-----GKWSKILLYDPIRDLVYCSNWISEDI-SVIDRKTKLEIRKTDK-----IGLPRGL- 259 (433)
T ss_dssp EEEEEETTTCCEEEEEECS-----SSSEEEEEEETTTTEEEEEETTTTEE-EEEETTTTEEEEECCC-----CSEEEEE-
T ss_pred EEEEEECCCceEEEEEcCC-----CCCeeEEEEcCCCCEEEEEecCCCcE-EEEECCCCcEEEEecC-----CCCceEE-
Confidence 99999975 4554444445 5568889999977544 443 3444 45555544332 2221 1122222
Q ss_pred CCCCCCCCcEEEEEEe--------CCeEEEEecCCcc----cccCCCceEEEECCCCcEE-EEeecCCeEEEEecCCCCc
Q 003205 184 EPKYTMTGSVEVLIGT--------DAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFV-ACFTHDGRLVVNNTNFSSP 250 (839)
Q Consensus 184 ~~~~S~~~~~~v~~s~--------d~tv~l~~~~~~~----~~~~~~i~~ia~Spng~~i-A~~~~~g~i~i~ssd~~~~ 250 (839)
.++|+|+.++..+. |++|++|+..+.. ..+.+.+..+++||+|+.+ ++.+.+|++.+|+.+-.+.
T Consensus 260 --~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~ 337 (433)
T 3bws_A 260 --LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV 337 (433)
T ss_dssp --EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE
T ss_pred --EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE
Confidence 45669998888884 7799999987543 2334578899999999755 5557899999999775555
Q ss_pred cccccCCCCCCCCceeeecC------------------------ceEEEEecC----EEEEEcCCC--CceEeccCCCeE
Q 003205 251 VIDESCESALPPEQIAWCGM------------------------DSVLLYWND----MLVMVAPQA--EPVQYFYDEPLV 300 (839)
Q Consensus 251 l~e~~~~~~~~p~~~~WcG~------------------------d~vv~~~~~----~l~lig~~~--~~v~f~~~~~~~ 300 (839)
+..+.. ...|..++|..+ |..+..|+- .+..+...+ ..+.|.+++..+
T Consensus 338 ~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l 415 (433)
T 3bws_A 338 QKSIPV--FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYL 415 (433)
T ss_dssp EEEEEC--SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEE
T ss_pred EEEecC--CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEE
Confidence 544432 235666666522 235555542 222222222 267788888777
Q ss_pred Eeec-CCc-eEEEccC
Q 003205 301 LIPE-CDG-VRILSNS 314 (839)
Q Consensus 301 l~~E-~DG-vRIit~~ 314 (839)
+++. .|| |+||..+
T Consensus 416 ~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 416 VISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEETTTTEEEEEEET
T ss_pred EEEECCCCeEEEEEec
Confidence 6554 577 9998765
No 118
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.39 E-value=1e-10 Score=132.20 Aligned_cols=231 Identities=13% Similarity=0.119 Sum_probs=159.3
Q ss_pred CCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCC-CCccccCCCCCccccccCeEEEEEE
Q 003205 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFW 141 (839)
Q Consensus 64 ~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~ 141 (839)
.+++|++|+. +|+.+.++..|. +.|.++.|+ +..+++++.||+|++|++. |+......+| ...|..+.+.
T Consensus 177 ~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-----~~~v~~~~~~ 248 (445)
T 2ovr_B 177 TDRTLKVWNAETGECIHTLYGHT--STVRCMHLH-EKRVVSGSRDATLRVWDIETGQCLHVLMGH-----VAAVRCVQYD 248 (445)
T ss_dssp TTSCEEEEETTTTEEEEEECCCS--SCEEEEEEE-TTEEEEEETTSEEEEEESSSCCEEEEEECC-----SSCEEEEEEC
T ss_pred CCCeEEEEECCcCcEEEEECCCC--CcEEEEEec-CCEEEEEeCCCEEEEEECCCCcEEEEEcCC-----cccEEEEEEC
Confidence 6899999995 788999999888 999999996 4568999999999999964 6666666677 6678877773
Q ss_pred CCeEEEEecCCeEEEEecCCCce-EEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----ccc
Q 003205 142 GNGVVCVTEANRYFCMADFATMK-VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVD 215 (839)
Q Consensus 142 ~~G~v~~t~~~~~~~v~~~~~~~-~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~ 215 (839)
++-++..+.++.+. +++..... ...+.. +.....++. + ++..++..+.|++|++||..... ..+
T Consensus 249 ~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~----~~~~v~~~~---~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 318 (445)
T 2ovr_B 249 GRRVVSGAYDFMVK-VWDPETETCLHTLQG----HTNRVYSLQ---F--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 318 (445)
T ss_dssp SSCEEEEETTSCEE-EEEGGGTEEEEEECC----CSSCEEEEE---E--CSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred CCEEEEEcCCCEEE-EEECCCCcEeEEecC----CCCceEEEE---E--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC
Confidence 33333333455554 45554333 233321 222233331 1 78899999999999999987543 456
Q ss_pred CCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCC--CCCCCCceeee-------cCceEEEEecC----EEE
Q 003205 216 DTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCE--SALPPEQIAWC-------GMDSVLLYWND----MLV 282 (839)
Q Consensus 216 ~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~--~~~~p~~~~Wc-------G~d~vv~~~~~----~l~ 282 (839)
..++..+++ +|+++++++.||+|.+|+..-.+.+.++... ....+..+.|. +.|..+..|+- .+.
T Consensus 319 ~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 319 QSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 396 (445)
T ss_dssp CSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred cccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceee
Confidence 667776665 5679999999999999997666666666541 12344556664 56777777862 333
Q ss_pred EE------cCCCC--ceEeccCCCeEEeecCCc-----eEEEccC
Q 003205 283 MV------APQAE--PVQYFYDEPLVLIPECDG-----VRILSNS 314 (839)
Q Consensus 283 li------g~~~~--~v~f~~~~~~~l~~E~DG-----vRIit~~ 314 (839)
-+ ++.+. .+.|.+++..++++.-|| ++||+=+
T Consensus 397 ~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 397 NLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp EEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred eeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence 33 33333 678888888888888888 6776543
No 119
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.39 E-value=9.1e-12 Score=140.12 Aligned_cols=240 Identities=13% Similarity=0.150 Sum_probs=169.2
Q ss_pred eEEEeecCCCeEEEEEeCCeEEEEeC-CCCccccCC--CCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCceE
Q 003205 90 LIGMSWSEDQTLICVVQDGTVYRYNI-HAELIEPNA--SMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMKV 165 (839)
Q Consensus 90 I~~~~fs~de~Lv~v~~dGtv~l~~~-~G~~~~~~~--g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~~ 165 (839)
+..++||++..|++ .-|++|++||. .|+...... +| ...|.+++|+++|..+++++.+ ...+|++.....
T Consensus 108 ~~~l~wS~~n~lAv-gld~tV~lWd~~tg~~~~~~~~~~~-----~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 108 LNLVDWSSGNVLAV-ALDNSVYLWSASSGDILQLLQMEQP-----GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp CBCEEECTTSEEEE-EETTEEEEEETTTCCEEEEEECCST-----TCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred ceeEEECCCCEEEE-EeCCEEEEEECCCCCEEEEEEecCC-----CCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE
Confidence 44589998765555 45999999985 577644332 34 4569999999999888886543 456777765443
Q ss_pred -EEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc------cccCCCceEEEECCCCcEEEEeecCC
Q 003205 166 -CELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDG 238 (839)
Q Consensus 166 -~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~Spng~~iA~~~~~g 238 (839)
..+.. +.....++ +.++..++..+.|+++++|+..... ..+...+..+.++|+|+++|+++.||
T Consensus 182 ~~~~~~----h~~~v~~~-----s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~ 252 (420)
T 4gga_A 182 LRNMTS----HSARVGSL-----SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN 252 (420)
T ss_dssp EEEECC----CSSCEEEE-----EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEeC----CCCceEEE-----eeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccc
Confidence 33321 22333322 2278899999999999999977542 56788999999999999999999999
Q ss_pred eEEEEecCCCCc----cccccCCCCCCCCceeee------------cCceEEEEecC----EEEEEcCCCC--ceEeccC
Q 003205 239 RLVVNNTNFSSP----VIDESCESALPPEQIAWC------------GMDSVLLYWND----MLVMVAPQAE--PVQYFYD 296 (839)
Q Consensus 239 ~i~i~ssd~~~~----l~e~~~~~~~~p~~~~Wc------------G~d~vv~~~~~----~l~lig~~~~--~v~f~~~ 296 (839)
.+.+|+..-.+. +..+..+ ......+.|| +.|..+..|+- .+..+..... .+.|.++
T Consensus 253 ~v~i~~~~~~~~~~~~~~~~~~~-~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~ 331 (420)
T 4gga_A 253 LVNVWPSAPGEGGWVPLQTFTQH-QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH 331 (420)
T ss_dssp CEEEEESSCCSSCSCCSEEECCC-SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETT
T ss_pred cceEEeeccccccceeeeeeccc-CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCC
Confidence 999998654432 2222222 3455677777 24666777753 2222222232 6677777
Q ss_pred CCeEEee--cCCc-eEEEccCcceeeeccchhhHhhhccCCCChhhhHHHHH
Q 003205 297 EPLVLIP--ECDG-VRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDAL 345 (839)
Q Consensus 297 ~~~~l~~--E~DG-vRIit~~~~~~l~~Vp~~~~~vf~igS~~pga~L~~A~ 345 (839)
+..++++ ..|| |+||...+.+.+..+..|...|..+..++.|.+|+.+.
T Consensus 332 ~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s 383 (420)
T 4gga_A 332 YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 383 (420)
T ss_dssp TTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred CCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 7766554 3688 99999999999999999999999998888888887665
No 120
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.38 E-value=1.6e-11 Score=131.03 Aligned_cols=240 Identities=13% Similarity=0.141 Sum_probs=163.2
Q ss_pred EEEeecCCCeEEEEEeCCeEEEEeC-CCCccccCC--CCCccccccCeEEEEEECCeEEEEecCCe-EEEEecCCCceE-
Q 003205 91 IGMSWSEDQTLICVVQDGTVYRYNI-HAELIEPNA--SMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMKV- 165 (839)
Q Consensus 91 ~~~~fs~de~Lv~v~~dGtv~l~~~-~G~~~~~~~--g~~~~~~~~~V~~~~~~~~G~v~~t~~~~-~~~v~~~~~~~~- 165 (839)
..|+||+++. +.+..|++|++||. .|+..+... +| ...|..+.++++|..+++++.+ ...+|++++.+.
T Consensus 29 ~~l~WS~~~~-lAvg~D~tV~iWd~~tg~~~~~~~~~~~-----~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 29 NLVDWSSGNV-LAVALDNSVYLWSASSGDILQLLQMEQP-----GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp BCEEECTTSE-EEEEETTEEEEEETTTCCEEEEEECCST-----TCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred eEEEECCCCE-EEEEeCCEEEEEECCCCCEEEEEEecCC-----CCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeE
Confidence 4588999874 44556999999996 577754433 34 5569999999999888886543 456777775443
Q ss_pred EEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc------cccCCCceEEEECCCCcEEEEeecCCe
Q 003205 166 CELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGR 239 (839)
Q Consensus 166 ~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~Spng~~iA~~~~~g~ 239 (839)
..+.. +.....++ ++++..++..+.++.+..|+..... ..+...+..++++|+|+++++++.||+
T Consensus 103 ~~~~~----h~~~~~~~-----~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 173 (318)
T 4ggc_A 103 RNMTS----HSARVGSL-----SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 173 (318)
T ss_dssp EEEEC----CSSCEEEE-----EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEecC----ccceEEEe-----ecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcc
Confidence 22221 22332322 2377888888999999999877542 467888999999999999999999999
Q ss_pred EEEEecCCCCccccc---cCCCCCCCCceeee------------cCceEEEEecC----EEEEEcCCCC--ceEeccCCC
Q 003205 240 LVVNNTNFSSPVIDE---SCESALPPEQIAWC------------GMDSVLLYWND----MLVMVAPQAE--PVQYFYDEP 298 (839)
Q Consensus 240 i~i~ssd~~~~l~e~---~~~~~~~p~~~~Wc------------G~d~vv~~~~~----~l~lig~~~~--~v~f~~~~~ 298 (839)
|.+|+..-.+..... .......+..+.|+ +.+..+..|+. ......+... .+.|.+++.
T Consensus 174 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 253 (318)
T 4ggc_A 174 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK 253 (318)
T ss_dssp EEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTT
T ss_pred eeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeeccccc
Confidence 999986533322111 11112233444554 24445556643 2333333333 566777766
Q ss_pred eEEe--ecCCc-eEEEccCcceeeeccchhhHhhhccCCCChhhhHHHHH
Q 003205 299 LVLI--PECDG-VRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDAL 345 (839)
Q Consensus 299 ~~l~--~E~DG-vRIit~~~~~~l~~Vp~~~~~vf~igS~~pga~L~~A~ 345 (839)
.+++ ...|| |+||...+.+.+..+..|...|..+..++.|.+|+.+.
T Consensus 254 ~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s 303 (318)
T 4ggc_A 254 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 303 (318)
T ss_dssp EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred ceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 5544 34788 99999999999999999999999988888887776543
No 121
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.34 E-value=4.6e-11 Score=144.26 Aligned_cols=295 Identities=12% Similarity=0.065 Sum_probs=172.5
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC-CCceeEEEecCCC----------------------CCe
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISETVWKNPG----------------------GRL 90 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G~ll~ti~~~~~~----------------------~~I 90 (839)
....+++||+|..||..+... ++....+|.+|+.. |+....+..+... ..+
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d------~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 111 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKD------SDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGI 111 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCS------SCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEES
T ss_pred CCCCceEecCCCEEEEEeccC------CCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCc
Confidence 345899999999999987310 00012389999975 5555555444310 127
Q ss_pred EEEeecCCCeEEEEEeCCeEEEEeCCCC---ccccCCCCCccccccCeEEEEEECCeEEEEec-CCeEEEEecCCCceEE
Q 003205 91 IGMSWSEDQTLICVVQDGTVYRYNIHAE---LIEPNASMGKECFEENVVECVFWGNGVVCVTE-ANRYFCMADFATMKVC 166 (839)
Q Consensus 91 ~~~~fs~de~Lv~v~~dGtv~l~~~~G~---~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~-~~~~~~v~~~~~~~~~ 166 (839)
.++.|||||+.++...+++|++|++.+. ......++ ...+..+.|+|+|..++.. +++++ +++..+....
T Consensus 112 ~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~-----~~~~~~~~~SPDG~~la~~~~~~i~-~~d~~~g~~~ 185 (741)
T 2ecf_A 112 VDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHG-----EGFATDAKLSPKGGFVSFIRGRNLW-VIDLASGRQM 185 (741)
T ss_dssp CCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCS-----SSCEEEEEECTTSSEEEEEETTEEE-EEETTTTEEE
T ss_pred ceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccC-----CcccccccCCCCCCEEEEEeCCcEE-EEecCCCCEE
Confidence 8899999999766666699999998765 43334444 4568899999999766554 44554 5556655555
Q ss_pred EcCCCCCC---CCCceEE-------EeCCCCCCCCcEEEEEEeCC---------------------------------eE
Q 003205 167 ELARPEVE---ELPHCVA-------VIEPKYTMTGSVEVLIGTDA---------------------------------GI 203 (839)
Q Consensus 167 ~l~~~~~~---~~~~~w~-------vi~~~~S~~~~~~v~~s~d~---------------------------------tv 203 (839)
.+...... .....|. +..+.|||||+.+++.+.|+ +|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 55431110 0000110 13346888999999998765 88
Q ss_pred EEEecCC-cc--c-----ccCCCceEEEECCCCcEEEEeec-----CCeEEEEecCCCCccccccCCCCC---CCCceee
Q 003205 204 LMLDEDG-VQ--K-----VDDTLSQKMAVSPNGNFVACFTH-----DGRLVVNNTNFSSPVIDESCESAL---PPEQIAW 267 (839)
Q Consensus 204 ~l~~~~~-~~--~-----~~~~~i~~ia~Spng~~iA~~~~-----~g~i~i~ssd~~~~l~e~~~~~~~---~p~~~~W 267 (839)
++|+.++ .. . .+...+..+++ |||+.||+.+. +++|++|+.+-++....+..+... ....+.|
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF 344 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence 9999876 43 1 24556889999 99999998764 456999986644433222211111 2246667
Q ss_pred ecCceEEEEec-C---EEEEE----------cCCCC--ce-EeccCCCeE-EeecCCc---eEEEccCc-ceeeeccchh
Q 003205 268 CGMDSVLLYWN-D---MLVMV----------APQAE--PV-QYFYDEPLV-LIPECDG---VRILSNSS-MEFLQRVPAS 325 (839)
Q Consensus 268 cG~d~vv~~~~-~---~l~li----------g~~~~--~v-~f~~~~~~~-l~~E~DG---vRIit~~~-~~~l~~Vp~~ 325 (839)
.-+..++..-+ + .|..+ ++... .+ .|+.++..+ +.+..|| ++||.-+. ...+++++.
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~- 423 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK- 423 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-
T ss_pred CCCCeEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-
Confidence 64333222211 1 23322 22222 23 477787654 4444553 77876532 333444443
Q ss_pred hHhhhccCCCChhhhHH
Q 003205 326 TEQIFAIGSTSPAALLY 342 (839)
Q Consensus 326 ~~~vf~igS~~pga~L~ 342 (839)
...++.+..++.|..|+
T Consensus 424 ~~~~~~~~~spdg~~l~ 440 (741)
T 2ecf_A 424 APGMHSASFARNASVYV 440 (741)
T ss_dssp SCSEEEEEECTTSSEEE
T ss_pred CCCceEEEECCCCCEEE
Confidence 33344555555554443
No 122
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.33 E-value=1.8e-10 Score=130.04 Aligned_cols=200 Identities=10% Similarity=0.076 Sum_probs=138.4
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEe
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYN 114 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~ 114 (839)
.+.+++.+|..+|+.. .+++|++|+ .+|+.+.++..|. +.|.++.|+ ++.+++++.||+|++|+
T Consensus 175 ~v~~l~~~~~~l~sg~------------~dg~i~vwd~~~~~~~~~~~~h~--~~v~~l~~~-~~~l~s~s~dg~i~vwd 239 (435)
T 1p22_A 175 SVLCLQYDERVIITGS------------SDSTVRVWDVNTGEMLNTLIHHC--EAVLHLRFN-NGMMVTCSKDRSIAVWD 239 (435)
T ss_dssp CEEEEECCSSEEEEEE------------TTSCEEEEESSSCCEEEEECCCC--SCEEEEECC-TTEEEEEETTSCEEEEE
T ss_pred cEEEEEECCCEEEEEc------------CCCeEEEEECCCCcEEEEEcCCC--CcEEEEEEc-CCEEEEeeCCCcEEEEe
Confidence 3455555666666665 689999999 4689999999888 999999998 45789999999999998
Q ss_pred CC-CCcc---ccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCce-EEEcCCCCCCCCCceEEEeCCCCCC
Q 003205 115 IH-AELI---EPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMK-VCELARPEVEELPHCVAVIEPKYTM 189 (839)
Q Consensus 115 ~~-G~~~---~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~-~~~l~~~~~~~~~~~w~vi~~~~S~ 189 (839)
+. ++.. ....+| ...|..+.+.++-++..+.++.+ .+++..... ...+.... ....+...
T Consensus 240 ~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~l~s~~~dg~i-~vwd~~~~~~~~~~~~~~--~~v~~~~~------- 304 (435)
T 1p22_A 240 MASPTDITLRRVLVGH-----RAAVNVVDFDDKYIVSASGDRTI-KVWNTSTCEFVRTLNGHK--RGIACLQY------- 304 (435)
T ss_dssp CSSSSCCEEEEEECCC-----SSCEEEEEEETTEEEEEETTSEE-EEEETTTCCEEEEEECCS--SCEEEEEE-------
T ss_pred CCCCCCceeeeEecCC-----CCcEEEEEeCCCEEEEEeCCCeE-EEEECCcCcEEEEEcCCC--CcEEEEEe-------
Confidence 75 3332 455667 66788877744444444445554 456665432 33333210 12222222
Q ss_pred CCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCC---------cccccc
Q 003205 190 TGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSS---------PVIDES 255 (839)
Q Consensus 190 ~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~---------~l~e~~ 255 (839)
++..++..+.|++|++||..... ..+.+++..+++ +|+++|+++.||+|.+|+..... .+..+.
T Consensus 305 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 382 (435)
T 1p22_A 305 RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV 382 (435)
T ss_dssp ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc
Confidence 67889999999999999987433 567888999888 78899999999999999853222 333444
Q ss_pred CCCCCCCCceeee
Q 003205 256 CESALPPEQIAWC 268 (839)
Q Consensus 256 ~~~~~~p~~~~Wc 268 (839)
.+ ...+..+.|.
T Consensus 383 ~h-~~~v~~l~~~ 394 (435)
T 1p22_A 383 EH-SGRVFRLQFD 394 (435)
T ss_dssp CC-SSCCCCEEEC
T ss_pred CC-CCCeEEEEeC
Confidence 44 3456667764
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.32 E-value=7.4e-11 Score=128.72 Aligned_cols=172 Identities=10% Similarity=0.120 Sum_probs=116.2
Q ss_pred cCCceEEEEcCCCCc----------eeEEEecCCCCCeEEEeecC--CCe-EEEEEeCCeEEEEeCC-CCccccCCCCCc
Q 003205 63 SALRKLRIFNSAGVL----------ISETVWKNPGGRLIGMSWSE--DQT-LICVVQDGTVYRYNIH-AELIEPNASMGK 128 (839)
Q Consensus 63 ~~~~~I~iy~~~G~l----------l~ti~~~~~~~~I~~~~fs~--de~-Lv~v~~dGtv~l~~~~-G~~~~~~~g~~~ 128 (839)
+.|++|++|+.+|.. +..+.... .+.|.++.|+| ++. +++++.||+|++|++. |+......++.
T Consensus 92 s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~- 169 (343)
T 3lrv_A 92 GPCNRLLLLYPGNQITILDSKTNKVLREIEVDS-ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKS- 169 (343)
T ss_dssp CSTTEEEEEETTTEEEEEETTTCCEEEEEECCC-SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCS-
T ss_pred cCCCeEEEEEccCceEEeecCCcceeEEeecCC-CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-
Confidence 468899999776543 55555322 27899999999 887 5789999999999974 55433332221
Q ss_pred cccccCeEEEEEECCeEEEEecCC-eEEEEecCCCceE--EEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEE
Q 003205 129 ECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKV--CELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILM 205 (839)
Q Consensus 129 ~~~~~~V~~~~~~~~G~v~~t~~~-~~~~v~~~~~~~~--~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l 205 (839)
...|..+.|+++|..+++++. ....+|++..... ..+.. ++.....++ .|||+|..++..+ +++|++
T Consensus 170 ---~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~---~h~~~v~~l---~fs~~g~~l~s~~-~~~v~i 239 (343)
T 3lrv_A 170 ---DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV---DEEAKIKEV---KFADNGYWMVVEC-DQTVVC 239 (343)
T ss_dssp ---SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC---CTTSCEEEE---EECTTSSEEEEEE-SSBEEE
T ss_pred ---CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec---cCCCCEEEE---EEeCCCCEEEEEe-CCeEEE
Confidence 446888999999999998543 3445666654332 23321 122232333 6778999999888 559999
Q ss_pred EecCCcc---cc-----cCCCce--EEEECCCCcEEEEeec-CCeEEEEecC
Q 003205 206 LDEDGVQ---KV-----DDTLSQ--KMAVSPNGNFVACFTH-DGRLVVNNTN 246 (839)
Q Consensus 206 ~~~~~~~---~~-----~~~~i~--~ia~Spng~~iA~~~~-~g~i~i~ssd 246 (839)
||..... .. +..++. .++|||+|+++|+++. ++.+.||+-+
T Consensus 240 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 240 FDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp EETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence 9987543 11 224444 5999999999999988 9999999754
No 124
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.30 E-value=1.1e-10 Score=131.80 Aligned_cols=187 Identities=10% Similarity=0.098 Sum_probs=133.2
Q ss_pred CCCEEEEcCCCC-eEEEEecCchhhhhhcccCCceEEEEcCCC-C-------ceeEEEecCCCCCeEEEeecC-CCe-EE
Q 003205 34 SRNKVACAPFGG-PIAVIRDDSKIVQLYAESALRKLRIFNSAG-V-------LISETVWKNPGGRLIGMSWSE-DQT-LI 102 (839)
Q Consensus 34 ~~~~va~sp~Gg-~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G-~-------ll~ti~~~~~~~~I~~~~fs~-de~-Lv 102 (839)
..+.++++|+|. .+++.. .+++|++|+... . ....+..|. +.|.++.|+| ++. ++
T Consensus 183 ~v~~l~~~~~~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~--~~v~~v~~~p~~~~~l~ 248 (430)
T 2xyi_A 183 EGYGLSWNPNLNGYLLSAS------------DDHTICLWDINATPKEHRVIDAKNIFTGHT--AVVEDVAWHLLHESLFG 248 (430)
T ss_dssp CCCCEEECTTSTTEEEEEC------------TTSCEEEEETTSCCBGGGEEECSEEECCCS--SCEEEEEECSSCTTEEE
T ss_pred CeEEEEeCCCCCCeEEEEe------------CCCeEEEEeCCCCCCCCceeccceeecCCC--CCEeeeEEeCCCCCEEE
Confidence 446789999988 777775 589999999765 1 134555666 8999999999 454 57
Q ss_pred EEEeCCeEEEEeCCCC----ccccCCCCCccccccCeEEEEEECCeE-EEEecC-CeEEEEecCCCc--eEEEcCCCCCC
Q 003205 103 CVVQDGTVYRYNIHAE----LIEPNASMGKECFEENVVECVFWGNGV-VCVTEA-NRYFCMADFATM--KVCELARPEVE 174 (839)
Q Consensus 103 ~v~~dGtv~l~~~~G~----~~~~~~g~~~~~~~~~V~~~~~~~~G~-v~~t~~-~~~~~v~~~~~~--~~~~l~~~~~~ 174 (839)
+++.||+|++|++... ......+| ...|..+.|+++|- ++++++ ...+.++++... ....+..
T Consensus 249 s~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~---- 319 (430)
T 2xyi_A 249 SVADDQKLMIWDTRNNNTSKPSHTVDAH-----TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES---- 319 (430)
T ss_dssp EEETTSEEEEEETTCSCSSSCSEEEECC-----SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC----
T ss_pred EEeCCCeEEEEECCCCCCCcceeEeecC-----CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec----
Confidence 9999999999987532 33333356 66799999999774 455543 234556665532 1222221
Q ss_pred CCCceEEEeCCCCCCCCc-EEEEEEeCCeEEEEecCC---------------cc----cccCCCceEEEECCCCc-EEEE
Q 003205 175 ELPHCVAVIEPKYTMTGS-VEVLIGTDAGILMLDEDG---------------VQ----KVDDTLSQKMAVSPNGN-FVAC 233 (839)
Q Consensus 175 ~~~~~w~vi~~~~S~~~~-~~v~~s~d~tv~l~~~~~---------------~~----~~~~~~i~~ia~Spng~-~iA~ 233 (839)
+....+++ .|+|++. +++..+.|++|.+|+... .. ..+.++|..+++||+|+ ++|+
T Consensus 320 h~~~v~~i---~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s 396 (430)
T 2xyi_A 320 HKDEIFQV---QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS 396 (430)
T ss_dssp CSSCEEEE---EECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEE
T ss_pred CCCCEEEE---EECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEE
Confidence 22233444 5667885 577788899999999875 11 35677899999999999 8999
Q ss_pred eecCCeEEEEecC
Q 003205 234 FTHDGRLVVNNTN 246 (839)
Q Consensus 234 ~~~~g~i~i~ssd 246 (839)
.+.||+|.||+.+
T Consensus 397 ~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 397 VSEDNIMQVWQMA 409 (430)
T ss_dssp EETTSEEEEEEEC
T ss_pred EECCCCEEEeEcc
Confidence 9999999999865
No 125
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.30 E-value=2.5e-11 Score=147.49 Aligned_cols=187 Identities=16% Similarity=0.103 Sum_probs=137.2
Q ss_pred CCCEEEEcCC--CCeEEEEecCchhhhhhcccCCceEEEEcCCCC---ceeEEEecCCCCCeEEEeecCC--Ce-EEEEE
Q 003205 34 SRNKVACAPF--GGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV---LISETVWKNPGGRLIGMSWSED--QT-LICVV 105 (839)
Q Consensus 34 ~~~~va~sp~--Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~---ll~ti~~~~~~~~I~~~~fs~d--e~-Lv~v~ 105 (839)
....++++|+ |..+|+.. .|++|++|+..+. .+.++..|. +.|.++.|+|+ +. +++++
T Consensus 55 ~V~~l~~s~~~~~~~l~s~s------------~Dg~I~vwd~~~~~~~~~~~~~~h~--~~V~~v~~sp~~~~~~l~sgs 120 (753)
T 3jro_A 55 PVWRVDWAHPKFGTILASCS------------YDGKVLIWKEENGRWSQIAVHAVHS--ASVNSVQWAPHEYGPLLLVAS 120 (753)
T ss_dssp CEEEEEECCTTSCSEEEEEE------------TTSCEEEEEEETTEEEEEEEECCCS--SCEEEEEECCGGGCSEEEEEE
T ss_pred ceEEEEecCCCCCCEEEEEe------------CCCeEEEEECCCCcccccccccCCC--CCeEEEEECCCCCCCEEEEEe
Confidence 4567888888 89999886 5899999997554 566677777 89999999998 65 68999
Q ss_pred eCCeEEEEeCCCC--c-cccCCCCCccccccCeEEEEEEC-------------CeEEEEec--CCeEEEEecCCCc----
Q 003205 106 QDGTVYRYNIHAE--L-IEPNASMGKECFEENVVECVFWG-------------NGVVCVTE--ANRYFCMADFATM---- 163 (839)
Q Consensus 106 ~dGtv~l~~~~G~--~-~~~~~g~~~~~~~~~V~~~~~~~-------------~G~v~~t~--~~~~~~v~~~~~~---- 163 (839)
.||+|++|++... . .....+| ...|..+.+.+ +|..++++ ++.+ .++++...
T Consensus 121 ~dg~I~vwdl~~~~~~~~~~~~~~-----~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I-~iwd~~~~~~~~ 194 (753)
T 3jro_A 121 SDGKVSVVEFKENGTTSPIIIDAH-----AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV-KIWKYNSDAQTY 194 (753)
T ss_dssp TTSEEEEEECCSSSCCCCEEEECC-----SSCEEEEEECCCC---------CGGGCCEEEEETTSCE-EEEEEETTTTEE
T ss_pred CCCcEEEEEeecCCCcceeEeecC-----CCceEEEEecCcccccccccccCCCCCEEEEEECCCeE-EEEeccCCcccc
Confidence 9999999997544 1 2334455 66789889887 46666665 3443 33433221
Q ss_pred e-EEEcCCCCCCCCCceEEEeCCCCCCC---CcEEEEEEeCCeEEEEecCCcc----------cccCCCceEEEECCCCc
Q 003205 164 K-VCELARPEVEELPHCVAVIEPKYTMT---GSVEVLIGTDAGILMLDEDGVQ----------KVDDTLSQKMAVSPNGN 229 (839)
Q Consensus 164 ~-~~~l~~~~~~~~~~~w~vi~~~~S~~---~~~~v~~s~d~tv~l~~~~~~~----------~~~~~~i~~ia~Spng~ 229 (839)
. ...+.. +....+++ .|+|+ |..++..+.||+|++|+..... ..+.+++..++|||+|+
T Consensus 195 ~~~~~~~~----h~~~V~~l---~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~ 267 (753)
T 3jro_A 195 VLESTLEG----HSDWVRDV---AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN 267 (753)
T ss_dssp EEEEEECC----CSSCEEEE---EECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTC
T ss_pred eeeeeecC----CCCcEEEE---EeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCC
Confidence 1 112211 22233333 56678 8999999999999999987531 34678899999999999
Q ss_pred EEEEeecCCeEEEEecCC
Q 003205 230 FVACFTHDGRLVVNNTNF 247 (839)
Q Consensus 230 ~iA~~~~~g~i~i~ssd~ 247 (839)
++|+++.||+|.+|+.+.
T Consensus 268 ~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 268 VLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CEEEECSSSCEECCBCCS
T ss_pred EEEEEcCCCEEEEEecCC
Confidence 999999999999998663
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.29 E-value=2.2e-10 Score=128.49 Aligned_cols=206 Identities=8% Similarity=-0.032 Sum_probs=137.7
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCeEE-EEE-eCCeEEEE
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLI-CVV-QDGTVYRY 113 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~Lv-~v~-~dGtv~l~ 113 (839)
.++++|+|..+++.. .++.|++|+. .|+.+.++..+. ..+.++.|+|++..+ +.. .||+|++|
T Consensus 174 ~~~~~~~~~~~~s~~------------~d~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~i~~~ 239 (433)
T 3bws_A 174 TISIPEHNELWVSQM------------QANAVHVFDLKTLAYKATVDLTG--KWSKILLYDPIRDLVYCSNWISEDISVI 239 (433)
T ss_dssp EEEEGGGTEEEEEEG------------GGTEEEEEETTTCCEEEEEECSS--SSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEEcCCCEEEEEEC------------CCCEEEEEECCCceEEEEEcCCC--CCeeEEEEcCCCCEEEEEecCCCcEEEE
Confidence 456666666666554 4799999995 568888898777 899999999999754 444 68999999
Q ss_pred eC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecC---------CeEEEEecCCCceEEEcCCCCCCCCCceEEEe
Q 003205 114 NI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEA---------NRYFCMADFATMKVCELARPEVEELPHCVAVI 183 (839)
Q Consensus 114 ~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~---------~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi 183 (839)
++ .|+....... ...+..+.+.++|..+++.+ .....+++..+........ ....+. .
T Consensus 240 d~~~~~~~~~~~~------~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~--~-- 307 (433)
T 3bws_A 240 DRKTKLEIRKTDK------IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG--PPGNKR--H-- 307 (433)
T ss_dssp ETTTTEEEEECCC------CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE--EEECEE--E--
T ss_pred ECCCCcEEEEecC------CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc--CCCCcc--e--
Confidence 97 4555433322 23478888888885444432 2233455555443322211 001122 2
Q ss_pred CCCCCCCCcEEEEE-EeCCeEEEEecCCcc----cccCCCceEEEECCCCcEEEEeec---------------CCeEEEE
Q 003205 184 EPKYTMTGSVEVLI-GTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTH---------------DGRLVVN 243 (839)
Q Consensus 184 ~~~~S~~~~~~v~~-s~d~tv~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~~~---------------~g~i~i~ 243 (839)
..|+|+|+.++.. +.+++|++|+..+.. ..+...+..+++||+|+++++.+. ||+|++|
T Consensus 308 -~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~ 386 (433)
T 3bws_A 308 -IVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVI 386 (433)
T ss_dssp -EEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEE
T ss_pred -EEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEE
Confidence 2466799766554 669999999987543 335567899999999999888876 4799999
Q ss_pred ecCCCCccccccCCCCCCCCceeeecCc
Q 003205 244 NTNFSSPVIDESCESALPPEQIAWCGMD 271 (839)
Q Consensus 244 ssd~~~~l~e~~~~~~~~p~~~~WcG~d 271 (839)
+..-.+.+..+... ..|..+.|.-+.
T Consensus 387 d~~~~~~~~~~~~~--~~~~~~~~s~dg 412 (433)
T 3bws_A 387 DTTTDTVKEFWEAG--NQPTGLDVSPDN 412 (433)
T ss_dssp ETTTTEEEEEEECS--SSEEEEEECTTS
T ss_pred ECCCCcEEEEecCC--CCCceEEEcCCC
Confidence 97656666555543 357777776543
No 127
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.28 E-value=6.8e-11 Score=138.88 Aligned_cols=189 Identities=13% Similarity=0.048 Sum_probs=131.5
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEE-EEe---C
Q 003205 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLIC-VVQ---D 107 (839)
Q Consensus 32 ~l~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~-v~~---d 107 (839)
.+..+.++++|+|..||..++ .+++++||+.+|.....+..+. .+.+..+.|||| +++. ... +
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~-----------~~g~~~lw~~~~g~~~~lt~~~-~~~~~~~~~spd-~~l~~~~~~~g~ 87 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGF-----------SEGSVNAYLYDGGETVKLNREP-INSVLDPHYGVG-RVILVRDVSKGA 87 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEE-----------ETTEEEEEEEETTEEEECCSSC-CSEECEECTTCS-EEEEEEECSTTS
T ss_pred ccchheeecCCCCCeEEEEEc-----------cCCceeEEEEcCCCcEeeeccc-ccccccccCCCC-eEEEEeccCCCC
Confidence 446789999999999999873 3789999999888877776654 147899999999 7654 443 3
Q ss_pred CeEEEE--eC--CCCccccCCCCCccccccCeEEEEEEC--CeEEEEecCCe-EEEEecCCCceEEEcCCCCCCCCCceE
Q 003205 108 GTVYRY--NI--HAELIEPNASMGKECFEENVVECVFWG--NGVVCVTEANR-YFCMADFATMKVCELARPEVEELPHCV 180 (839)
Q Consensus 108 Gtv~l~--~~--~G~~~~~~~g~~~~~~~~~V~~~~~~~--~G~v~~t~~~~-~~~v~~~~~~~~~~l~~~~~~~~~~~w 180 (839)
...++| +. .|...+...++ ++....+++ +++++++.+.+ .+ ++++++....++.. .+. |
T Consensus 88 ~~~~l~~~~~~~~g~~~~l~~~~-------~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~-----~~~-~ 153 (582)
T 3o4h_A 88 EQHALFKVNTSRPGEEQRLEAVK-------PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELAR-----LPG-F 153 (582)
T ss_dssp CCEEEEEEETTSTTCCEECTTSC-------SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEE-----ESS-C
T ss_pred cceEEEEEeccCCCccccccCCC-------CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeec-----CCC-c
Confidence 556676 56 66654322222 122335555 55777766543 33 66666556555542 122 3
Q ss_pred EEeCCCCCCCCcEEEEEEeC----CeEEEEecCCcc----cccCCCceEEEECCCCcEEEEeecCC--eEEEEecCCCCc
Q 003205 181 AVIEPKYTMTGSVEVLIGTD----AGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDG--RLVVNNTNFSSP 250 (839)
Q Consensus 181 ~vi~~~~S~~~~~~v~~s~d----~tv~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~~~~g--~i~i~ssd~~~~ 250 (839)
.+ .|||||+.++..+.+ ++|++|+.++.. ..+.+.+..++|||||+.||....+| +|++|+.+-++.
T Consensus 154 ~~---~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~ 230 (582)
T 3o4h_A 154 GF---VSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV 230 (582)
T ss_dssp EE---EEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE
T ss_pred eE---EECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE
Confidence 33 577899999988876 789999976443 34567789999999999999777788 799998764443
No 128
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.24 E-value=1.8e-10 Score=120.58 Aligned_cols=169 Identities=12% Similarity=0.129 Sum_probs=115.9
Q ss_pred cCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCCC--CccccCCCCCccccccCeEEEEE
Q 003205 63 SALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHA--ELIEPNASMGKECFEENVVECVF 140 (839)
Q Consensus 63 ~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G--~~~~~~~g~~~~~~~~~V~~~~~ 140 (839)
..+++|++|+..+..+..+.-+. +.|.++.|+||++.+++..+|.|++|++.+ +......++. ...|..+.+
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~--~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~ 92 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTP--ELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFA----TICNNDHGI 92 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEES--SCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTC----CCBCSCCEE
T ss_pred CcceeEEEEeCCCCceeeeccCC--cceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccc----cccccceEE
Confidence 46899999998777777777677 899999999999977667799999999765 4444333331 345677889
Q ss_pred ECCeEEEEecC------CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEE-EEeCCeEEEEe--cCCc
Q 003205 141 WGNGVVCVTEA------NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVL-IGTDAGILMLD--EDGV 211 (839)
Q Consensus 141 ~~~G~v~~t~~------~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~-~s~d~tv~l~~--~~~~ 211 (839)
+++|..+++.. .++|.++ ..+.....+.. ..+ . ..+.+||+|+.+++ .+.++++.+|+ ..+.
T Consensus 93 spdg~~l~~~~~~~~~~~~l~~~~-~~~~~~~~~~~----~~~-~---~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~ 163 (297)
T 2ojh_A 93 SPDGALYAISDKVEFGKSAIYLLP-STGGTPRLMTK----NLP-S---YWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG 163 (297)
T ss_dssp CTTSSEEEEEECTTTSSCEEEEEE-TTCCCCEECCS----SSS-E---EEEEECTTSSEEEEEEEETTEEEEEEEETTTC
T ss_pred CCCCCEEEEEEeCCCCcceEEEEE-CCCCceEEeec----CCC-c---cceEECCCCCEEEEEECCCCceEEEEEECCCC
Confidence 99887666543 3566554 33333444432 112 2 22357779998874 55688777776 4333
Q ss_pred c----cccCCCceEEEECCCCcEEEEeec-CCeEEEEecC
Q 003205 212 Q----KVDDTLSQKMAVSPNGNFVACFTH-DGRLVVNNTN 246 (839)
Q Consensus 212 ~----~~~~~~i~~ia~Spng~~iA~~~~-~g~i~i~ssd 246 (839)
. ..+...+..+++||+|+.+++.+. ++.+.||.-+
T Consensus 164 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~ 203 (297)
T 2ojh_A 164 VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVR 203 (297)
T ss_dssp CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEEC
Confidence 2 345567899999999999888764 7776666544
No 129
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.21 E-value=5.4e-10 Score=122.88 Aligned_cols=187 Identities=11% Similarity=0.053 Sum_probs=128.2
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCeEE-----------
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQTLI----------- 102 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv----------- 102 (839)
...+++++.+..+|+.. +.+++|+||+ ..|+.+.++.. . +.|.++.|+++...+
T Consensus 61 ~~~~~~~~~~~~~~~~~-----------~~d~~v~iWd~~~~~~~~~~~~-~--~~v~~v~~~~~~~~~~~~~~i~i~d~ 126 (355)
T 3vu4_A 61 LSKVRMLHRTNYVAFVT-----------GVKEVVHIWDDVKKQDVSRIKV-D--APVKDLFLSREFIVVSYGDVISVFKF 126 (355)
T ss_dssp CCEEEECTTSSEEEEEC-----------SSTTEEEEEETTTTEEEEEEEC-S--SCEEEEEECSSEEEEEETTEEEEEES
T ss_pred eEEEEEcCCCCEEEEEE-----------CCccEEEEEECCCCcEEEEEEC-C--CceEEEEEcCCEEEEEEcCEEEEEEC
Confidence 45778888888888775 2568999999 57899998873 4 689999998764221
Q ss_pred -------------------------E--EEeCCeEEEEeCCCCc-----------------cccCCCCCccccccCeEEE
Q 003205 103 -------------------------C--VVQDGTVYRYNIHAEL-----------------IEPNASMGKECFEENVVEC 138 (839)
Q Consensus 103 -------------------------~--v~~dGtv~l~~~~G~~-----------------~~~~~g~~~~~~~~~V~~~ 138 (839)
+ .+.||+|++|++...- .....+| ...|..+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h-----~~~v~~~ 201 (355)
T 3vu4_A 127 GNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH-----TNPIKMV 201 (355)
T ss_dssp STTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCC-----SSCEEEE
T ss_pred CCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc-----CCceEEE
Confidence 1 2345555555543210 2334456 6679999
Q ss_pred EEECCeEEEEecCCe--EEEEecCCCc-eEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc---
Q 003205 139 VFWGNGVVCVTEANR--YFCMADFATM-KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--- 212 (839)
Q Consensus 139 ~~~~~G~v~~t~~~~--~~~v~~~~~~-~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~--- 212 (839)
.|+++|..++|++.+ +..+|+.... ....+.. +. +....+++ .|||+|+.++..+.|++|.+|+.....
T Consensus 202 ~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~-g~-h~~~v~~~---~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~ 276 (355)
T 3vu4_A 202 RLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRR-GL-DRADVVDM---KWSTDGSKLAVVSDKWTLHVFEIFNDQDNK 276 (355)
T ss_dssp EECTTSSEEEEEETTCSEEEEEETTTCCEEEEEEC-TT-CCSCEEEE---EECTTSCEEEEEETTCEEEEEESSCCSCCC
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc-CC-CCCcEEEE---EECCCCCEEEEEECCCEEEEEEccCCCCcc
Confidence 999999888887543 4778887743 3334431 00 12233333 678899999999999999999976431
Q ss_pred --c-----------------------ccCCCceEEEECCCCcEEEEeecCCeEEEEec
Q 003205 213 --K-----------------------VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNT 245 (839)
Q Consensus 213 --~-----------------------~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ss 245 (839)
. ....+...+++||+|+.|++.+.||++.+|..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~ 334 (355)
T 3vu4_A 277 RHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKV 334 (355)
T ss_dssp SEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred cccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 0 01122477999999999999999999888853
No 130
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.21 E-value=1.1e-09 Score=120.98 Aligned_cols=197 Identities=16% Similarity=0.143 Sum_probs=133.2
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC-CCceeEEEecCCCCCeEEEeecCCCe-E-EEEEeCCeE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISETVWKNPGGRLIGMSWSEDQT-L-ICVVQDGTV 110 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G~ll~ti~~~~~~~~I~~~~fs~de~-L-v~v~~dGtv 110 (839)
....++++|+|..|++... .++.|++|+.. |+.+..+.. . ..+.++.|+|+++ + ++...||+|
T Consensus 75 ~v~~~~~spdg~~l~~~~~-----------~~~~v~v~d~~~~~~~~~~~~-~--~~~~~~~~s~dg~~l~~~~~~~~~v 140 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNM-----------ASSTLSVIDTTSNTVAGTVKT-G--KSPLGLALSPDGKKLYVTNNGDKTV 140 (391)
T ss_dssp SEEEEEECTTSSEEEEEET-----------TTTEEEEEETTTTEEEEEEEC-S--SSEEEEEECTTSSEEEEEETTTTEE
T ss_pred CccceEECCCCCEEEEEEC-----------CCCEEEEEECCCCeEEEEEeC-C--CCcceEEECCCCCEEEEEeCCCCEE
Confidence 4568899999999887752 46899999965 666676664 3 6789999999997 4 466679999
Q ss_pred EEEeCC-CCccccCCCCCccccccCeEEEEEECCeEEE-EecC-CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCC
Q 003205 111 YRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVC-VTEA-NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKY 187 (839)
Q Consensus 111 ~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~-~t~~-~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~ 187 (839)
++|++. |+....... ...+..+.+.++|..+ ++.. .....+++........... .......+ .|
T Consensus 141 ~~~d~~~~~~~~~~~~------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~---~~ 207 (391)
T 1l0q_A 141 SVINTVTKAVINTVSV------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK----VEAAPSGI---AV 207 (391)
T ss_dssp EEEETTTTEEEEEEEC------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----CSSEEEEE---EE
T ss_pred EEEECCCCcEEEEEec------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe----cCCCccce---EE
Confidence 999964 554332222 2356788888888443 4532 2334455665443322211 11111222 56
Q ss_pred CCCCcEEEEEE---eCCeEEEEecCCcc----cccCCCceEEEECCCCcEE-EEeecCCeEEEEecCCCCccccccCC
Q 003205 188 TMTGSVEVLIG---TDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFV-ACFTHDGRLVVNNTNFSSPVIDESCE 257 (839)
Q Consensus 188 S~~~~~~v~~s---~d~tv~l~~~~~~~----~~~~~~i~~ia~Spng~~i-A~~~~~g~i~i~ssd~~~~l~e~~~~ 257 (839)
+|+|+.++..+ .+++|++||..... ......+..+++||+|+++ +..+.+|++.+|+..-.+.+..+..+
T Consensus 208 ~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~ 285 (391)
T 1l0q_A 208 NPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVG 285 (391)
T ss_dssp CTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred CCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence 77999888888 58999999987543 1223346899999999987 56678999999997756655555433
No 131
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.19 E-value=1.2e-09 Score=131.13 Aligned_cols=263 Identities=10% Similarity=0.002 Sum_probs=158.2
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRY 113 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~ 113 (839)
....+++||+ +.++... +++|++|+..+..+..+..+. +.+.++.|||||+.+....|++|++|
T Consensus 83 ~v~~~~~spd-~~~~~~~-------------~~~i~~~d~~~~~~~~l~~~~--~~~~~~~~SpdG~~la~~~~~~i~v~ 146 (706)
T 2z3z_A 83 PSFRTLDAGR-GLVVLFT-------------QGGLVGFDMLARKVTYLFDTN--EETASLDFSPVGDRVAYVRNHNLYIA 146 (706)
T ss_dssp CCEEEEETTT-TEEEEEE-------------TTEEEEEETTTTEEEEEECCT--TCCTTCEECTTSSEEEEEETTEEEEE
T ss_pred CceeEEECCC-CeEEEEE-------------CCEEEEEECCCCceEEccCCc--ccccCCcCCCCCCEEEEEECCeEEEE
Confidence 3567899999 7777764 489999998776666666555 77889999999986555789999999
Q ss_pred eCC------CCccccCCCCCcccc---------ccCeEEEEEECCeEEEEecC---------------------------
Q 003205 114 NIH------AELIEPNASMGKECF---------EENVVECVFWGNGVVCVTEA--------------------------- 151 (839)
Q Consensus 114 ~~~------G~~~~~~~g~~~~~~---------~~~V~~~~~~~~G~v~~t~~--------------------------- 151 (839)
++. |+..+....+..... ...+..+.++|+|..+++.+
T Consensus 147 ~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~ 226 (706)
T 2z3z_A 147 RGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYP 226 (706)
T ss_dssp ECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCC
T ss_pred ecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCC
Confidence 975 454443332210000 01136778889997666653
Q ss_pred ------C-eEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCC-----eEEEEecCCc-c-----c
Q 003205 152 ------N-RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDA-----GILMLDEDGV-Q-----K 213 (839)
Q Consensus 152 ------~-~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~-----tv~l~~~~~~-~-----~ 213 (839)
. .-..++++.+.....+... ..... .+..+.|||||+.+++.+.++ +|++|+..+. . .
T Consensus 227 ~~g~~~~~~~l~~~d~~~~~~~~~~~~---~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~ 302 (706)
T 2z3z_A 227 MAGTPSHHVTVGIYHLATGKTVYLQTG---EPKEK-FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV 302 (706)
T ss_dssp BTTSCCCEEEEEEEETTTTEEEECCCC---SCTTC-EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred CCCCCCCeeEEEEEECCCCceEeeccC---CCCce-eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE
Confidence 1 2244566665555444321 11111 234457888999999888765 9999998754 2 1
Q ss_pred -ccC---CCceEEEECC--CCcEEEEeecCCeEEEEecCC-CCccccccCCCCCCCCc-eeeecCce-------------
Q 003205 214 -VDD---TLSQKMAVSP--NGNFVACFTHDGRLVVNNTNF-SSPVIDESCESALPPEQ-IAWCGMDS------------- 272 (839)
Q Consensus 214 -~~~---~~i~~ia~Sp--ng~~iA~~~~~g~i~i~ssd~-~~~l~e~~~~~~~~p~~-~~WcG~d~------------- 272 (839)
.+. .++..++||| ||+++++.+.+|++.||.-+. +..+..+..+ ...... +.|..+..
T Consensus 303 ~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~-~~~v~~~~~~spdg~~l~~~~~~~~~~~ 381 (706)
T 2z3z_A 303 ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG-EWEVTNFAGFDPKGTRLYFESTEASPLE 381 (706)
T ss_dssp EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS-SSCEEEEEEECTTSSEEEEEESSSCTTC
T ss_pred ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC-CeEEEeeeEEcCCCCEEEEEecCCCCce
Confidence 112 1346789999 999999988888766665442 2333333222 112223 45653221
Q ss_pred -EEEEecC---EEEEEcCCCC--ceEeccCCCeEEee-cCC---c-eEEEccCcce
Q 003205 273 -VLLYWND---MLVMVAPQAE--PVQYFYDEPLVLIP-ECD---G-VRILSNSSME 317 (839)
Q Consensus 273 -vv~~~~~---~l~lig~~~~--~v~f~~~~~~~l~~-E~D---G-vRIit~~~~~ 317 (839)
.+..|+- .+..+.+.+. .+.|++|+..+++. .-+ + +++++.++.+
T Consensus 382 ~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 382 RHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp BEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 2223321 1222222222 57788888766543 222 3 8888776555
No 132
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.16 E-value=3.7e-10 Score=135.79 Aligned_cols=194 Identities=9% Similarity=0.005 Sum_probs=124.8
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC-CCceeEEEecCCCC---CeEEEeecCCCe-EEEEEeC--
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISETVWKNPGG---RLIGMSWSEDQT-LICVVQD-- 107 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G~ll~ti~~~~~~~---~I~~~~fs~de~-Lv~v~~d-- 107 (839)
...+++||+|..++. . .+++|++|+.. |+....+..+. . .|.++.|||||+ |++++.+
T Consensus 19 ~~~~~~spdg~~~~~-~------------~dg~i~~~d~~~g~~~~~~~~~~--~~~~~v~~~~~SpDg~~l~~~~~~~~ 83 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-E------------QKGTVRLWNVETNTSTVLIEGKK--IESLRAIRYEISPDREYALFSYNVEP 83 (723)
T ss_dssp CCCCCBSSSSCBCCC-C------------SSSCEEEBCGGGCCCEEEECTTT--TTTTTCSEEEECTTSSEEEEEESCCC
T ss_pred ccccEEcCCCcEEEE-e------------CCCCEEEEECCCCcEEEEecccc--ccccccceEEECCCCCEEEEEecCcc
Confidence 457789999997664 2 46899999964 55555555444 3 489999999998 4566654
Q ss_pred -------CeEEEEeCC-CCccccC--CCCCccccccCeEEEEEECCeEEEEec-CCeEEEEecCCCceEEEcCCCCCCCC
Q 003205 108 -------GTVYRYNIH-AELIEPN--ASMGKECFEENVVECVFWGNGVVCVTE-ANRYFCMADFATMKVCELARPEVEEL 176 (839)
Q Consensus 108 -------Gtv~l~~~~-G~~~~~~--~g~~~~~~~~~V~~~~~~~~G~v~~t~-~~~~~~v~~~~~~~~~~l~~~~~~~~ 176 (839)
+++++|++. |+..+.. .++ ...|..+.++|+|..++.. +++++ +++..+....++...+. ..
T Consensus 84 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~-----~~~~~~~~~SPdG~~la~~~~~~i~-~~~~~~g~~~~~~~~~~-~~ 156 (723)
T 1xfd_A 84 IYQHSYTGYYVLSKIPHGDPQSLDPPEVS-----NAKLQYAGWGPKGQQLIFIFENNIY-YCAHVGKQAIRVVSTGK-EG 156 (723)
T ss_dssp CSSSCCCSEEEEEESSSCCCEECCCTTCC-----SCCCSBCCBCSSTTCEEEEETTEEE-EESSSSSCCEEEECCCB-TT
T ss_pred ceeecceeeEEEEECCCCceEeccCCccc-----cccccccEECCCCCEEEEEECCeEE-EEECCCCceEEEecCCC-CC
Confidence 788899975 4432221 222 3347778999999655544 45555 45555444444433111 11
Q ss_pred C-----ceE--------EEeCCCCCCCCcEEEEEEeCC----------------------------------eEEEEecC
Q 003205 177 P-----HCV--------AVIEPKYTMTGSVEVLIGTDA----------------------------------GILMLDED 209 (839)
Q Consensus 177 ~-----~~w--------~vi~~~~S~~~~~~v~~s~d~----------------------------------tv~l~~~~ 209 (839)
. ..| .+..+.|||||+.+++.+.++ +|++|+..
T Consensus 157 ~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~ 236 (723)
T 1xfd_A 157 VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN 236 (723)
T ss_dssp TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred ceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC
Confidence 1 001 001236888999999988653 79999987
Q ss_pred Ccc-----cc------cCCCceEEEECCCCcEEEEeecC----CeEEEEecCCCCc
Q 003205 210 GVQ-----KV------DDTLSQKMAVSPNGNFVACFTHD----GRLVVNNTNFSSP 250 (839)
Q Consensus 210 ~~~-----~~------~~~~i~~ia~Spng~~iA~~~~~----g~i~i~ssd~~~~ 250 (839)
+.. .. +...+..+++||||++|+..+.. ++|++|+.+-++.
T Consensus 237 ~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~ 292 (723)
T 1xfd_A 237 GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC 292 (723)
T ss_dssp SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE
T ss_pred CCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc
Confidence 543 11 14567899999999999877543 4699998664443
No 133
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.16 E-value=1.8e-09 Score=136.07 Aligned_cols=281 Identities=8% Similarity=0.029 Sum_probs=178.0
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeC----C--
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQD----G-- 108 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~d----G-- 108 (839)
..+++|| ..||... .+.|.+|+.+|.....+..|. +.+.++.|||||+ |+.++.+ |
T Consensus 18 ~~~~~S~--~~iaf~~-------------~~~l~~~~~~gg~~~~lt~~~--~~v~~~~~SPDG~~la~~s~~~~~~~~~ 80 (1045)
T 1k32_A 18 LNPDIHG--DRIIFVC-------------CDDLWEHDLKSGSTRKIVSNL--GVINNARFFPDGRKIAIRVMRGSSLNTA 80 (1045)
T ss_dssp EEEEEET--TEEEEEE-------------TTEEEEEETTTCCEEEEECSS--SEEEEEEECTTSSEEEEEEEESTTCCEE
T ss_pred eCcEEeC--CEEEEEE-------------CCcEEEEECCCCcEEEeeeCC--CcccCeEECCCCCEEEEEEeeccCCCCC
Confidence 3667775 5888886 368999999998888898887 8999999999998 5566543 3
Q ss_pred eEEEEeCCCCccccCCCCCccccccCe-------EEEEEECCeEEEEecCC--------eEEEEecCCCceEEEcCCC--
Q 003205 109 TVYRYNIHAELIEPNASMGKECFEENV-------VECVFWGNGVVCVTEAN--------RYFCMADFATMKVCELARP-- 171 (839)
Q Consensus 109 tv~l~~~~G~~~~~~~g~~~~~~~~~V-------~~~~~~~~G~v~~t~~~--------~~~~v~~~~~~~~~~l~~~-- 171 (839)
+|++|+..|...+...+| ...+ ..+.|+++|.++++.+. ++|.++ ..+.....+...
T Consensus 81 ~i~~~d~~~g~~~~lt~~-----~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~-~~~g~~~~l~~~~~ 154 (1045)
T 1k32_A 81 DLYFYNGENGEIKRITYF-----SGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVE-NDGINFVPLNLGPA 154 (1045)
T ss_dssp EEEEEETTTTEEEECCCC-----CEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEE-GGGTEEEECCSCSC
T ss_pred eEEEEECCCCCeEEcccC-----CCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEE-CCCCCeEEecCCCc
Confidence 788889866544444445 3445 78899999976666542 366543 222222222110
Q ss_pred ------------------------------------------------------------------CCCCCCceEEEe--
Q 003205 172 ------------------------------------------------------------------EVEELPHCVAVI-- 183 (839)
Q Consensus 172 ------------------------------------------------------------------~~~~~~~~w~vi-- 183 (839)
..+.....|.+-
T Consensus 155 ~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~ 234 (1045)
T 1k32_A 155 THILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLD 234 (1045)
T ss_dssp SEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETT
T ss_pred ceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCC
Confidence 000122334321
Q ss_pred --------------CCCCCCCCcEEEEEEeCCeEEEEecCCcc--cc-------------cCCCceEEEEC-CCCcEEEE
Q 003205 184 --------------EPKYTMTGSVEVLIGTDAGILMLDEDGVQ--KV-------------DDTLSQKMAVS-PNGNFVAC 233 (839)
Q Consensus 184 --------------~~~~S~~~~~~v~~s~d~tv~l~~~~~~~--~~-------------~~~~i~~ia~S-png~~iA~ 233 (839)
.+.|||||+.+++. .+++|++|+..+.. .. +...+..++|| |||+.||+
T Consensus 235 g~~~~~l~~~~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~ 313 (1045)
T 1k32_A 235 GKDLRKHTSFTDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAF 313 (1045)
T ss_dssp SCSCEECCCCCSSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEE
T ss_pred CCcceEecCCCCcceeeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEE
Confidence 11367788877766 57888888874332 11 12358899999 99999999
Q ss_pred eecCCeEEEEecCCCCccccccCCCCCCCCceeee--------cCceEEE-EecC----EEEEEcCCCC--ceEeccCCC
Q 003205 234 FTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC--------GMDSVLL-YWND----MLVMVAPQAE--PVQYFYDEP 298 (839)
Q Consensus 234 ~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~Wc--------G~d~vv~-~~~~----~l~lig~~~~--~v~f~~~~~ 298 (839)
.+ ++++++|+.+-+... ....+....+..+.|. +++..+. .|+- ...+.++... .+.|++|+.
T Consensus 314 ~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~ 391 (1045)
T 1k32_A 314 VS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGK 391 (1045)
T ss_dssp EE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSS
T ss_pred EE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCC
Confidence 87 789999987644322 2222211134455665 2233333 3431 2233344343 688999999
Q ss_pred eEEeecCCc-eEEEccCcceeeeccchhhHhhhccCCCChhhhHH
Q 003205 299 LVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLY 342 (839)
Q Consensus 299 ~~l~~E~DG-vRIit~~~~~~l~~Vp~~~~~vf~igS~~pga~L~ 342 (839)
.+++...|| +++|..+..+.....+.+...+..+..++.|..|+
T Consensus 392 ~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la 436 (1045)
T 1k32_A 392 FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIA 436 (1045)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEE
T ss_pred EEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEE
Confidence 888888887 99999887776666655655566666666676554
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.16 E-value=1.3e-08 Score=109.55 Aligned_cols=234 Identities=13% Similarity=0.130 Sum_probs=143.9
Q ss_pred CCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCe-EEEEEe-CCeEEEEeC-CCCc-cccCCCCCccccccCeEE-
Q 003205 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQ-DGTVYRYNI-HAEL-IEPNASMGKECFEENVVE- 137 (839)
Q Consensus 64 ~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~-dGtv~l~~~-~G~~-~~~~~g~~~~~~~~~V~~- 137 (839)
.++.|.+|+. +|+++.++..+. ..+ ++.|+||++ ++++.. +++|++|++ .|+. ......+ .....
T Consensus 18 ~~~~v~~~d~~~~~~~~~~~~~~--~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~------~~~~~~ 88 (331)
T 3u4y_A 18 HLRRISFFSTDTLEILNQITLGY--DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG------QSSMAD 88 (331)
T ss_dssp GGTEEEEEETTTCCEEEEEECCC--CEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC------SSCCCC
T ss_pred CCCeEEEEeCcccceeeeEEccC--Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC------CCCccc
Confidence 5789999995 588888888655 566 999999998 555555 889999987 4554 3322222 22344
Q ss_pred EEEECCeEEEEecCCe----EEEEecCCCceEE-EcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe-CCe-EEEEecCC
Q 003205 138 CVFWGNGVVCVTEANR----YFCMADFATMKVC-ELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-DAG-ILMLDEDG 210 (839)
Q Consensus 138 ~~~~~~G~v~~t~~~~----~~~v~~~~~~~~~-~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~-d~t-v~l~~~~~ 210 (839)
+.++++|..+++.... ...+++..+.... .++. +..|++ + .+||||+.++..+. +++ |.+|+.+.
T Consensus 89 ~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~--~---~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 89 VDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI---PYDAVG--I---AISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp EEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC---CTTEEE--E---EECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred eEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC---CCCccc--e---EECCCCCEEEEEecCCCceEEEEEECC
Confidence 7888988766665433 5556666644332 2321 122332 2 45669987666655 477 89888663
Q ss_pred cc---------cccCCCceEEEECCCCcEEEEee-cCCeEEEEecCCCCc---cccccCCCCCCCCceeeecCce-----
Q 003205 211 VQ---------KVDDTLSQKMAVSPNGNFVACFT-HDGRLVVNNTNFSSP---VIDESCESALPPEQIAWCGMDS----- 272 (839)
Q Consensus 211 ~~---------~~~~~~i~~ia~Spng~~iA~~~-~~g~i~i~ssd~~~~---l~e~~~~~~~~p~~~~WcG~d~----- 272 (839)
.. .........+++||+|+++...+ .+++|.+|+.+-.+. +..+... ..|..+.|.-+..
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~ 238 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN--NLPGTIVVSRDGSTVYVL 238 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS--SCCCCEEECTTSSEEEEE
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC--CCCceEEECCCCCEEEEE
Confidence 21 12234468999999999765555 578999999775565 5555443 4677777763322
Q ss_pred -----EEEEecC---EEEEEc---------CCC----CceEeccCCCeEEee-cCCc-eEEEccCcc
Q 003205 273 -----VLLYWND---MLVMVA---------PQA----EPVQYFYDEPLVLIP-ECDG-VRILSNSSM 316 (839)
Q Consensus 273 -----vv~~~~~---~l~lig---------~~~----~~v~f~~~~~~~l~~-E~DG-vRIit~~~~ 316 (839)
.+..|+- .+..++ +.. ..+.|.+|+..++++ +-+| |+||.-+..
T Consensus 239 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 239 TESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred EcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 2223431 221111 111 125888888866544 4454 999998743
No 135
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.13 E-value=1e-09 Score=138.17 Aligned_cols=208 Identities=14% Similarity=0.106 Sum_probs=141.2
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecC---------CCCCeEEEeec-CCCeEEEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKN---------PGGRLIGMSWS-EDQTLICV 104 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~---------~~~~I~~~~fs-~de~Lv~v 104 (839)
....++||+|..||..+ ++.|.+|+..+..+.++..+. ..+.+.++.|| |||+.+..
T Consensus 247 ~~~~~~SpDG~~la~~~-------------~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~ 313 (1045)
T 1k32_A 247 YYPRHLNTDGRRILFSK-------------GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAF 313 (1045)
T ss_dssp SCEEEEEESSSCEEEEE-------------TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEE
T ss_pred cceeeEcCCCCEEEEEe-------------CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEE
Confidence 34779999999999875 578999998887777655421 00368999999 99985544
Q ss_pred EeCCeEEEEeCCCCccccCCCCCcccccc-CeEEEEEECCeEEEEec--CCeEEEEecCCCceEEEcCCCCCCCCCceEE
Q 003205 105 VQDGTVYRYNIHAELIEPNASMGKECFEE-NVVECVFWGNGVVCVTE--ANRYFCMADFATMKVCELARPEVEELPHCVA 181 (839)
Q Consensus 105 ~~dGtv~l~~~~G~~~~~~~g~~~~~~~~-~V~~~~~~~~G~v~~t~--~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~ 181 (839)
..+|++++|+..+.......++ .. .+..+.++ +|..++.. +.++|.+++..+.....+.. ....
T Consensus 314 ~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~----~~~~--- 380 (1045)
T 1k32_A 314 VSRGQAFIQDVSGTYVLKVPEP-----LRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEE----NLGN--- 380 (1045)
T ss_dssp EETTEEEEECTTSSBEEECSCC-----SCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCC----CCCS---
T ss_pred EEcCEEEEEcCCCCceEEccCC-----CcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecC----Cccc---
Confidence 4599999998764432223334 33 57778888 88665553 33455355665555555431 1222
Q ss_pred EeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCC----------eEEEEecC
Q 003205 182 VIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDG----------RLVVNNTN 246 (839)
Q Consensus 182 vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g----------~i~i~ssd 246 (839)
+..+.|||||+.+++.+.+++|++|+..+.. ..+.+++..++|||||++||+.+.++ +|++|+.+
T Consensus 381 ~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 381 VFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred eeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 2334678899999999999999999987543 35677899999999999999987654 79999876
Q ss_pred CCCccccccCCCCCCCCceeeecC
Q 003205 247 FSSPVIDESCESALPPEQIAWCGM 270 (839)
Q Consensus 247 ~~~~l~e~~~~~~~~p~~~~WcG~ 270 (839)
-++ ...+..+ ...+..+.|..+
T Consensus 461 ~g~-~~~l~~~-~~~~~~~~~spd 482 (1045)
T 1k32_A 461 GRK-IFAATTE-NSHDYAPAFDAD 482 (1045)
T ss_dssp TTE-EEECSCS-SSBEEEEEECTT
T ss_pred CCc-EEEeeCC-CcccCCceEcCC
Confidence 443 3233222 223445666533
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.13 E-value=1.9e-09 Score=129.99 Aligned_cols=191 Identities=5% Similarity=0.000 Sum_probs=124.8
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCC---ceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV---LISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVY 111 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~---ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~ 111 (839)
...+++||+|..||... .+.|.+|+..|. .+..+..+. +.+..+.|||||+.+....+++|+
T Consensus 111 v~~~~~SpDg~~l~~~~-------------~~~i~~~d~~~~~~~~~~~l~~~~--~~~~~~~~SPDG~~la~~~~~~i~ 175 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPL-------------GGELYLYDLKQEGKAAVRQLTHGE--GFATDAKLSPKGGFVSFIRGRNLW 175 (741)
T ss_dssp SCCCEECTTSSEEEEEE-------------TTEEEEEESSSCSTTSCCBCCCSS--SCEEEEEECTTSSEEEEEETTEEE
T ss_pred cceeEECCCCCEEEEEe-------------CCcEEEEECCCCCcceEEEcccCC--cccccccCCCCCCEEEEEeCCcEE
Confidence 46789999999999986 288999998877 777777666 789999999999966555678999
Q ss_pred EEeCCC-CccccCCCCCcccc-----------ccCeEEEEEECCeEEEEec--CC-------------------------
Q 003205 112 RYNIHA-ELIEPNASMGKECF-----------EENVVECVFWGNGVVCVTE--AN------------------------- 152 (839)
Q Consensus 112 l~~~~G-~~~~~~~g~~~~~~-----------~~~V~~~~~~~~G~v~~t~--~~------------------------- 152 (839)
+|++.+ +..+...++..... ...+..+.++++|..+++. ++
T Consensus 176 ~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 176 VIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp EEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred EEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence 999865 33333322210000 0013567888998655553 22
Q ss_pred --------eEEEEecCCC-ceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe-----CCeEEEEecCCcc-----c
Q 003205 153 --------RYFCMADFAT-MKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-----DAGILMLDEDGVQ-----K 213 (839)
Q Consensus 153 --------~~~~v~~~~~-~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~-----d~tv~l~~~~~~~-----~ 213 (839)
+++ +++..+ .....+.. ...+.-.+..+.| |||+.+++.+. +.+|++||..+.. .
T Consensus 256 ~g~~~~~~~l~-~~d~~~~~~~~~~~~----~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~ 329 (741)
T 2ecf_A 256 AGDANVQVKLG-VISPAEQAQTQWIDL----GKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH 329 (741)
T ss_dssp TTSCCCEEEEE-EECSSTTCCCEEECC----CSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE
T ss_pred CCCCCCeeEEE-EEECCCCCceEEecC----CCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE
Confidence 233 344444 44333321 1112222344467 79999988875 4689999987543 1
Q ss_pred ccCC----CceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 214 VDDT----LSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 214 ~~~~----~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
.+.. .+..++|||||+++++.+.+|+..||.-+
T Consensus 330 ~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 330 ETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp EECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred cCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence 2222 45689999999999888888865454433
No 137
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.12 E-value=3.1e-09 Score=113.95 Aligned_cols=234 Identities=13% Similarity=0.028 Sum_probs=142.0
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCC---CCCeEEEeecCCCeE-EEEE----
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNP---GGRLIGMSWSEDQTL-ICVV---- 105 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~---~~~I~~~~fs~de~L-v~v~---- 105 (839)
...++++|+|..+++... .++.|.+|+. +|+.+.++..... ...+.++.|+||++. +++.
T Consensus 36 ~~~~~~s~dg~~l~v~~~-----------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 104 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVN-----------KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVR 104 (337)
T ss_dssp CCCEEECTTSSEEEEEET-----------TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEE
T ss_pred ccceEEcCCCCEEEEEeC-----------CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccc
Confidence 457899999998877652 4688999995 6888888875320 016778999999964 5554
Q ss_pred --------eCCeEEEEeCCC-Cccc-cCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCceE-EEcCCCCCC
Q 003205 106 --------QDGTVYRYNIHA-ELIE-PNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKV-CELARPEVE 174 (839)
Q Consensus 106 --------~dGtv~l~~~~G-~~~~-~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~~-~~l~~~~~~ 174 (839)
.++.|++|++.+ +... +..+ ..+..+.++++|..+++.++.++.++ ..+... ..+...
T Consensus 105 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-------~~~~~~~~s~dg~~l~~~~~~i~~~d-~~~~~~~~~~~~~--- 173 (337)
T 1pby_B 105 LELTHFEVQPTRVALYDAETLSRRKAFEAP-------RQITMLAWARDGSKLYGLGRDLHVMD-PEAGTLVEDKPIQ--- 173 (337)
T ss_dssp ECSSCEEECCCEEEEEETTTTEEEEEEECC-------SSCCCEEECTTSSCEEEESSSEEEEE-TTTTEEEEEECST---
T ss_pred cccccccccCceEEEEECCCCcEEEEEeCC-------CCcceeEECCCCCEEEEeCCeEEEEE-CCCCcEeeeeecc---
Confidence 579999999754 3332 2222 23556778888875555577776554 443333 233211
Q ss_pred CCCceEEEeCCCCCCCCcEEEEEEe-CC-----------------------eEEEEecCCcc------cccCCCceEEEE
Q 003205 175 ELPHCVAVIEPKYTMTGSVEVLIGT-DA-----------------------GILMLDEDGVQ------KVDDTLSQKMAV 224 (839)
Q Consensus 175 ~~~~~w~vi~~~~S~~~~~~v~~s~-d~-----------------------tv~l~~~~~~~------~~~~~~i~~ia~ 224 (839)
..+. +..++|+|..++..+. ++ +|++|+..+.. ..+...+..+++
T Consensus 174 ~~~~-----~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 248 (337)
T 1pby_B 174 SWEA-----ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAV 248 (337)
T ss_dssp TTTT-----TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEE
T ss_pred ccCC-----CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEE
Confidence 1011 2245567664433222 11 56888877543 223445678999
Q ss_pred CCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCCceEeccCCCeEEeec
Q 003205 225 SPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPE 304 (839)
Q Consensus 225 Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~~~l~~E 304 (839)
||||+++++. +++|++|+.+-.+.+..+... ..|.. +.|.+++..++++.
T Consensus 249 s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~--~~~~~--------------------------~~~s~dg~~l~~~~ 298 (337)
T 1pby_B 249 NPAKTRAFGA--YNVLESFDLEKNASIKRVPLP--HSYYS--------------------------VNVSTDGSTVWLGG 298 (337)
T ss_dssp CTTSSEEEEE--ESEEEEEETTTTEEEEEEECS--SCCCE--------------------------EEECTTSCEEEEES
T ss_pred CCCCCEEEEe--CCeEEEEECCCCcCcceecCC--Cceee--------------------------EEECCCCCEEEEEc
Confidence 9999998877 689999986533333332222 12333 44444554443444
Q ss_pred CCc-eEEEccCcceeeeccchh
Q 003205 305 CDG-VRILSNSSMEFLQRVPAS 325 (839)
Q Consensus 305 ~DG-vRIit~~~~~~l~~Vp~~ 325 (839)
.|| |+||..+..+.+.+++..
T Consensus 299 ~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 299 ALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp BSSEEEEEETTTCCEEEEEECG
T ss_pred CCCcEEEEECcCCcEEEEEEcC
Confidence 455 777777777777766543
No 138
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.10 E-value=1.3e-08 Score=118.71 Aligned_cols=266 Identities=10% Similarity=0.087 Sum_probs=169.3
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC---CCCceeEEEecCCCCCeEEEeecC----CCeE-EEEE-
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS---AGVLISETVWKNPGGRLIGMSWSE----DQTL-ICVV- 105 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~---~G~ll~ti~~~~~~~~I~~~~fs~----de~L-v~v~- 105 (839)
...++++|+|..+++.. .+++|.+|+. .|+.+.+++. . ..+..+.||| ||+. +++.
T Consensus 181 ~~~v~~spdg~~l~v~~------------~d~~V~v~D~~~~t~~~~~~i~~-g--~~p~~va~sp~~~~dg~~l~v~~~ 245 (543)
T 1nir_A 181 VHISRMSASGRYLLVIG------------RDARIDMIDLWAKEPTKVAEIKI-G--IEARSVESSKFKGYEDRYTIAGAY 245 (543)
T ss_dssp EEEEEECTTSCEEEEEE------------TTSEEEEEETTSSSCEEEEEEEC-C--SEEEEEEECCSTTCTTTEEEEEEE
T ss_pred cceEEECCCCCEEEEEC------------CCCeEEEEECcCCCCcEEEEEec-C--CCcceEEeCCCcCCCCCEEEEEEc
Confidence 45788999999999986 4699999998 7888999983 4 5789999999 9985 4555
Q ss_pred eCCeEEEEeC-CCCccccCCCCC--cc---c-cccCeEEEEEEC-CeEEEEec--CCeEEEEecCCCc---eEEEcCCCC
Q 003205 106 QDGTVYRYNI-HAELIEPNASMG--KE---C-FEENVVECVFWG-NGVVCVTE--ANRYFCMADFATM---KVCELARPE 172 (839)
Q Consensus 106 ~dGtv~l~~~-~G~~~~~~~g~~--~~---~-~~~~V~~~~~~~-~G~v~~t~--~~~~~~v~~~~~~---~~~~l~~~~ 172 (839)
.+++|.+||. .++..+....+. .. . -+..|..+.+++ ++.++++. ++.++.++ .... ....+..
T Consensus 246 ~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd-~~~~~~l~~~~i~~-- 322 (543)
T 1nir_A 246 WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN-YKDIDNLTVTSIGA-- 322 (543)
T ss_dssp ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE-CTTSSSCEEEEEEC--
T ss_pred cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEE-ecCCCcceeEEecc--
Confidence 4899999985 455533222110 00 0 023678888887 44555553 45566554 3321 1122221
Q ss_pred CCCCCceEEEeCCCCCCCCcEEEEEEe-CCeEEEEecCCcc-----c----ccCCCceEEEECCC-CcEEEEee-cCCeE
Q 003205 173 VEELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDEDGVQ-----K----VDDTLSQKMAVSPN-GNFVACFT-HDGRL 240 (839)
Q Consensus 173 ~~~~~~~w~vi~~~~S~~~~~~v~~s~-d~tv~l~~~~~~~-----~----~~~~~i~~ia~Spn-g~~iA~~~-~~g~i 240 (839)
+..|++- .|||||+.++.++. +++|.+||..... . .|.+....+ ++|+ |...|+.+ .+++|
T Consensus 323 -~~~~~~~-----~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V 395 (543)
T 1nir_A 323 -APFLHDG-----GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSI 395 (543)
T ss_dssp -CSSCCCE-----EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEE
T ss_pred -CcCccCc-----eECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceE
Confidence 1223322 35679997766654 8899999987543 1 133333333 5787 66666654 57899
Q ss_pred EEEecCC-------CCccccccCCCC------CCC-CceeeecC--------ceEEEEecC-------EEEEEc------
Q 003205 241 VVNNTNF-------SSPVIDESCESA------LPP-EQIAWCGM--------DSVLLYWND-------MLVMVA------ 285 (839)
Q Consensus 241 ~i~ssd~-------~~~l~e~~~~~~------~~p-~~~~WcG~--------d~vv~~~~~-------~l~lig------ 285 (839)
.+|+.+- .+.+.++.++.. ..| ....|.++ +..|..|+- ++.-+|
T Consensus 396 ~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~ 475 (543)
T 1nir_A 396 SLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLG 475 (543)
T ss_dssp EEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCC
T ss_pred EEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccC
Confidence 9999875 445555544311 122 36788865 446666753 222232
Q ss_pred CCCC---ceEeccCCCeEEee-----cCCc-eEEEccCcceeeeccchh
Q 003205 286 PQAE---PVQYFYDEPLVLIP-----ECDG-VRILSNSSMEFLQRVPAS 325 (839)
Q Consensus 286 ~~~~---~v~f~~~~~~~l~~-----E~DG-vRIit~~~~~~l~~Vp~~ 325 (839)
..+. .+.|+.++..++++ +-|| |+||.....+++.++++.
T Consensus 476 ~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 476 EGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp SSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred CCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence 2122 67888889888766 3466 999999999999999853
No 139
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.10 E-value=1.7e-09 Score=130.21 Aligned_cols=187 Identities=8% Similarity=-0.036 Sum_probs=120.0
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCC---CeEEEeecCCCeE-EEEEe-----
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGG---RLIGMSWSEDQTL-ICVVQ----- 106 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~---~I~~~~fs~de~L-v~v~~----- 106 (839)
..++++|+|..++.. .+++|++|+..|.....+..+.. . .+.++.|||||+. ++++.
T Consensus 19 ~~~~~s~dg~~~~~~-------------~d~~i~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~SpDg~~la~~~~~~~~~ 84 (719)
T 1z68_A 19 FFPNWISGQEYLHQS-------------ADNNIVLYNIETGQSYTILSNRT-MKSVNASNYGLSPDRQFVYLESDYSKLW 84 (719)
T ss_dssp CCCEESSSSEEEEEC-------------TTSCEEEEESSSCCEEEEECHHH-HHTTTCSEEEECTTSSEEEEEEEEEECS
T ss_pred CccEECCCCeEEEEc-------------CCCCEEEEEcCCCcEEEEEcccc-ccccceeeEEECCCCCeEEEEecCceeE
Confidence 367899999655432 36899999986655444433320 2 3889999999985 55655
Q ss_pred ----CCeEEEEeCCCCcc-c-cCCCCCccccccCeEEEEEECCeEEEEec-CCeEEEEecCCCceEEEcCCCCCCC----
Q 003205 107 ----DGTVYRYNIHAELI-E-PNASMGKECFEENVVECVFWGNGVVCVTE-ANRYFCMADFATMKVCELARPEVEE---- 175 (839)
Q Consensus 107 ----dGtv~l~~~~G~~~-~-~~~g~~~~~~~~~V~~~~~~~~G~v~~t~-~~~~~~v~~~~~~~~~~l~~~~~~~---- 175 (839)
|+++++|++.+... . ..+ ...+..+.++|+|..++.. +++++ +++..+....++...+-..
T Consensus 85 ~~s~~~~i~~~d~~~g~~~~~~~l-------~~~~~~~~~SPDG~~la~~~~~~i~-~~~~~~g~~~~l~~~~~~~~v~~ 156 (719)
T 1z68_A 85 RYSYTATYYIYDLSNGEFVRGNEL-------PRPIQYLCWSPVGSKLAYVYQNNIY-LKQRPGDPPFQITFNGRENKIFN 156 (719)
T ss_dssp SSCEEEEEEEEETTTTEECCSSCC-------CSSBCCEEECSSTTCEEEEETTEEE-EESSTTSCCEECCCCCBTTTEEE
T ss_pred EeecceEEEEEECCCCccccceec-------CcccccceECCCCCEEEEEECCeEE-EEeCCCCCcEEEecCCCcCCeEc
Confidence 69999999865432 1 111 2346778999999655554 45555 5556554455554211100
Q ss_pred CCceEE--------EeCCCCCCCCcEEEEEEeCC----------------------------------eEEEEecCCccc
Q 003205 176 LPHCVA--------VIEPKYTMTGSVEVLIGTDA----------------------------------GILMLDEDGVQK 213 (839)
Q Consensus 176 ~~~~w~--------vi~~~~S~~~~~~v~~s~d~----------------------------------tv~l~~~~~~~~ 213 (839)
....|. ...+.|||||+.+++.+.|+ +|++|+..+...
T Consensus 157 g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~ 236 (719)
T 1z68_A 157 GIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAY 236 (719)
T ss_dssp SSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHH
T ss_pred ccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCc
Confidence 000110 02457899999999988652 788999876431
Q ss_pred -------------ccCCCceEEEECCCCcEEEEeecCC----eEEEEe
Q 003205 214 -------------VDDTLSQKMAVSPNGNFVACFTHDG----RLVVNN 244 (839)
Q Consensus 214 -------------~~~~~i~~ia~Spng~~iA~~~~~g----~i~i~s 244 (839)
.+.+.+..+++||||++++.....+ .|++|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d 284 (719)
T 1z68_A 237 VGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD 284 (719)
T ss_dssp HCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred cceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence 2555689999999998777654332 488888
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.09 E-value=1e-08 Score=111.02 Aligned_cols=214 Identities=10% Similarity=0.039 Sum_probs=131.8
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCC-------CeEEEeecCCCeE-EEEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGG-------RLIGMSWSEDQTL-ICVV 105 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~-------~I~~~~fs~de~L-v~v~ 105 (839)
...++++|+|+.+.+... .++.|.+|+. +|+.+.++..+.... .+.++.|+|++.. ++..
T Consensus 91 ~~~~~~s~dg~~l~v~~~-----------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 159 (353)
T 3vgz_A 91 PFGATINNTTQTLWFGNT-----------VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISG 159 (353)
T ss_dssp CCSEEEETTTTEEEEEET-----------TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEE
T ss_pred cceEEECCCCCEEEEEec-----------CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEe
Confidence 457889999997777652 4689999996 688889888754101 2789999999875 4444
Q ss_pred --eCCeEEEEeCC-CCccccCCCCCccccccCeEEEEEECCeEEEEe--cCCeEEEEecCCCceE-EEcCCCCCCCCCce
Q 003205 106 --QDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVT--EANRYFCMADFATMKV-CELARPEVEELPHC 179 (839)
Q Consensus 106 --~dGtv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t--~~~~~~~v~~~~~~~~-~~l~~~~~~~~~~~ 179 (839)
.+++|.+||.. |+.......+ ...+..+.++++|-.++. .++.++. .+..+... ..+.....+.....
T Consensus 160 ~~~~~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~~~i~~-~d~~~~~~~~~~~~~~~~~~~~~ 233 (353)
T 3vgz_A 160 IGKESVIWVVDGGNIKLKTAIQNT-----GKMSTGLALDSEGKRLYTTNADGELIT-IDTADNKILSRKKLLDDGKEHFF 233 (353)
T ss_dssp ESSSCEEEEEETTTTEEEEEECCC-----CTTCCCCEEETTTTEEEEECTTSEEEE-EETTTTEEEEEEECCCSSSCCCE
T ss_pred cCCCceEEEEcCCCCceEEEecCC-----CCccceEEECCCCCEEEEEcCCCeEEE-EECCCCeEEEEEEcCCCCCCccc
Confidence 38899999974 4443322212 223556778887754333 3455664 44444332 23322111011111
Q ss_pred EEEeCCCCCCCCcEEEEEEe-CCeEEEEecCCcc---cccCCCceEEEECCCCcEEEEee-cCCeEEEEecCCCCccccc
Q 003205 180 VAVIEPKYTMTGSVEVLIGT-DAGILMLDEDGVQ---KVDDTLSQKMAVSPNGNFVACFT-HDGRLVVNNTNFSSPVIDE 254 (839)
Q Consensus 180 w~vi~~~~S~~~~~~v~~s~-d~tv~l~~~~~~~---~~~~~~i~~ia~Spng~~iA~~~-~~g~i~i~ssd~~~~l~e~ 254 (839)
..+ .+||+|+.++..+. ++.|++||..+.. ....+.-..++|||+|+++...+ .+++|++|+.+-.+.+..+
T Consensus 234 ~~~---~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 310 (353)
T 3vgz_A 234 INI---SLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF 310 (353)
T ss_dssp EEE---EEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ceE---EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 122 45669997766665 5899999986443 11122236799999999766655 5889999987655555444
Q ss_pred cCCCCCCCCceeeecC
Q 003205 255 SCESALPPEQIAWCGM 270 (839)
Q Consensus 255 ~~~~~~~p~~~~WcG~ 270 (839)
... ..|..++|..+
T Consensus 311 ~~~--~~~~~~~~s~d 324 (353)
T 3vgz_A 311 DTP--THPNSLALSAD 324 (353)
T ss_dssp ECC--SEEEEEEECTT
T ss_pred ecC--CCCCeEEEcCC
Confidence 433 24556665543
No 141
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.09 E-value=8.1e-09 Score=107.88 Aligned_cols=187 Identities=13% Similarity=-0.019 Sum_probs=118.2
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC--CceeEEEecCCCCCeEEEeecCCCeE-EEEE--eCC
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG--VLISETVWKNPGGRLIGMSWSEDQTL-ICVV--QDG 108 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G--~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~--~dG 108 (839)
....++++|+|..+|+.. ++.|.+|+..+ ++......+. .+.+.++.|+||++. +++. .++
T Consensus 43 ~v~~~~~spdg~~l~~~~-------------~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~ 108 (297)
T 2ojh_A 43 LFEAPNWSPDGKYLLLNS-------------EGLLYRLSLAGDPSPEKVDTGFA-TICNNDHGISPDGALYAISDKVEFG 108 (297)
T ss_dssp CCEEEEECTTSSEEEEEE-------------TTEEEEEESSSCCSCEECCCTTC-CCBCSCCEECTTSSEEEEEECTTTS
T ss_pred ceEeeEECCCCCEEEEEc-------------CCeEEEEeCCCCCCceEeccccc-cccccceEECCCCCEEEEEEeCCCC
Confidence 456899999999999875 57899999765 4443333332 257889999999985 5666 334
Q ss_pred eEEEE--eCCCCccccCCCCCccccccCeEEEEEECCeEEEE-ec--CC--eEEEEecCCCceEEEcCCCCCCCCCceEE
Q 003205 109 TVYRY--NIHAELIEPNASMGKECFEENVVECVFWGNGVVCV-TE--AN--RYFCMADFATMKVCELARPEVEELPHCVA 181 (839)
Q Consensus 109 tv~l~--~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~-t~--~~--~~~~v~~~~~~~~~~l~~~~~~~~~~~w~ 181 (839)
..++| +..+...+.... ...+..+.++++|..++ +. ++ ++|.++ ..+.....+.. ....
T Consensus 109 ~~~l~~~~~~~~~~~~~~~------~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~-~~~~~~~~~~~----~~~~--- 174 (297)
T 2ojh_A 109 KSAIYLLPSTGGTPRLMTK------NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMD-IDSGVETRLTH----GEGR--- 174 (297)
T ss_dssp SCEEEEEETTCCCCEECCS------SSSEEEEEECTTSSEEEEEEEETTEEEEEEEE-TTTCCEEECCC----SSSC---
T ss_pred cceEEEEECCCCceEEeec------CCCccceEECCCCCEEEEEECCCCceEEEEEE-CCCCcceEccc----CCCc---
Confidence 55555 554443322222 22377788888886544 33 33 344443 23333444432 1111
Q ss_pred EeCCCCCCCCcEEEEEEe-CCeEEEEec--CCcc----cccCCCceEEEECCCCcEEEEeecC-----------CeEEEE
Q 003205 182 VIEPKYTMTGSVEVLIGT-DAGILMLDE--DGVQ----KVDDTLSQKMAVSPNGNFVACFTHD-----------GRLVVN 243 (839)
Q Consensus 182 vi~~~~S~~~~~~v~~s~-d~tv~l~~~--~~~~----~~~~~~i~~ia~Spng~~iA~~~~~-----------g~i~i~ 243 (839)
+..+.|||+|+.+++.+. ++.+.+|+. ++.. ..+...+..+++||+|++||+.+.+ ++|++|
T Consensus 175 ~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~ 254 (297)
T 2ojh_A 175 NDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLM 254 (297)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEE
T ss_pred cccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEE
Confidence 222356779998887775 776666654 3332 3345568899999999999998876 458888
Q ss_pred ecCCC
Q 003205 244 NTNFS 248 (839)
Q Consensus 244 ssd~~ 248 (839)
+.+-+
T Consensus 255 d~~~~ 259 (297)
T 2ojh_A 255 DMDGG 259 (297)
T ss_dssp ETTSC
T ss_pred ecCCC
Confidence 76533
No 142
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.08 E-value=4.3e-09 Score=122.81 Aligned_cols=280 Identities=6% Similarity=0.043 Sum_probs=173.8
Q ss_pred EEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeC-
Q 003205 39 ACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNI- 115 (839)
Q Consensus 39 a~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~- 115 (839)
+++|+|..+++.+ .+++|.+|+. .|+++.++.... . +..+.||||++ |++++.||+|++||+
T Consensus 144 ~~~p~~~~~vs~~------------~d~~V~v~D~~t~~~~~~i~~g~--~-~~~v~~spdg~~l~v~~~d~~V~v~D~~ 208 (543)
T 1nir_A 144 DLDLPNLFSVTLR------------DAGQIALVDGDSKKIVKVIDTGY--A-VHISRMSASGRYLLVIGRDARIDMIDLW 208 (543)
T ss_dssp CCCGGGEEEEEEG------------GGTEEEEEETTTCCEEEEEECST--T-EEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred ccCCCCEEEEEEc------------CCCeEEEEECCCceEEEEEecCc--c-cceEEECCCCCEEEEECCCCeEEEEECc
Confidence 5788776666554 4799999995 689999998654 3 88999999997 578999999999998
Q ss_pred --CCCccccCCCCCccccccCeEEEEEEC----CeEEEEecCC--eEEEEecCCCce-EEEcCCCCC--C-----CCCce
Q 003205 116 --HAELIEPNASMGKECFEENVVECVFWG----NGVVCVTEAN--RYFCMADFATMK-VCELARPEV--E-----ELPHC 179 (839)
Q Consensus 116 --~G~~~~~~~g~~~~~~~~~V~~~~~~~----~G~v~~t~~~--~~~~v~~~~~~~-~~~l~~~~~--~-----~~~~~ 179 (839)
.|+...... . ...+..+.|++ +|..+++.+. .-+.+++..... ...++..+. + ..+..
T Consensus 209 ~~t~~~~~~i~-~-----g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v 282 (543)
T 1nir_A 209 AKEPTKVAEIK-I-----GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV 282 (543)
T ss_dssp SSSCEEEEEEE-C-----CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE
T ss_pred CCCCcEEEEEe-c-----CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCce
Confidence 455433222 2 23568889998 8876666542 333455554332 233322110 0 11233
Q ss_pred EEEeCCCCCCCCcE-EEEEEeCCeEEEEecCCcc------cccCCCceEEEECCCCcEEE-EeecCCeEEEEecCCCCcc
Q 003205 180 VAVIEPKYTMTGSV-EVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVA-CFTHDGRLVVNNTNFSSPV 251 (839)
Q Consensus 180 w~vi~~~~S~~~~~-~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~Spng~~iA-~~~~~g~i~i~ssd~~~~l 251 (839)
..+ .+|+++.. ++....+++|.+|+..... .........++|||+|+++. ..+.+++|.+|+..-++.+
T Consensus 283 ~~i---~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~ 359 (543)
T 1nir_A 283 AAI---IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS 359 (543)
T ss_dssp EEE---EECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred EEE---EECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEE
Confidence 444 34556654 4444458899999976522 12344577899999999654 4456889999998766655
Q ss_pred ccccCCCCCC---------CC-ceeee-c--CceEEEEec------------CEEEEEcCCC--CceEeccCCCeEEeec
Q 003205 252 IDESCESALP---------PE-QIAWC-G--MDSVLLYWN------------DMLVMVAPQA--EPVQYFYDEPLVLIPE 304 (839)
Q Consensus 252 ~e~~~~~~~~---------p~-~~~Wc-G--~d~vv~~~~------------~~l~lig~~~--~~v~f~~~~~~~l~~E 304 (839)
..+.....-. |. .-.|. + .|..|..|+ ..-.+-|+.+ ..+.|.+++..+.+.-
T Consensus 360 ~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 360 ALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp EEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred EeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence 5554321000 11 22342 1 223344342 1123444432 3789999988776653
Q ss_pred -------CC-ceEEEccCcceee-ecc--------chhhHhhhccCCCChhhhHH
Q 003205 305 -------CD-GVRILSNSSMEFL-QRV--------PASTEQIFAIGSTSPAALLY 342 (839)
Q Consensus 305 -------~D-GvRIit~~~~~~l-~~V--------p~~~~~vf~igS~~pga~L~ 342 (839)
.| .|+||..+..+-+ +.+ |+....+..+..++.|..|+
T Consensus 440 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~ 494 (543)
T 1nir_A 440 TFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW 494 (543)
T ss_dssp TTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEE
T ss_pred CCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEE
Confidence 34 4999999988876 443 34455666777777776665
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.04 E-value=7.4e-10 Score=133.15 Aligned_cols=143 Identities=15% Similarity=0.109 Sum_probs=96.8
Q ss_pred CCeEEEeecCCCeEEEEEeCCeEEEEeCC-CCccccCCCCCccccccCeEEEEEECCeEEEEecCC----------eEEE
Q 003205 88 GRLIGMSWSEDQTLICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN----------RYFC 156 (839)
Q Consensus 88 ~~I~~~~fs~de~Lv~v~~dGtv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~----------~~~~ 156 (839)
..+.++.|||||+++..+.||+|++|+.. |+.....-++... ...|..+.|+++|..+++... .-+.
T Consensus 17 ~~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~--~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIE--SLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTT--TTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred ccccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEecccccc--ccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 34678899999997666899999999864 5554444434111 124889999999987766532 2344
Q ss_pred EecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cccCC--------------
Q 003205 157 MADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDT-------------- 217 (839)
Q Consensus 157 v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~~~-------------- 217 (839)
++++.+.....+... ..+...+..+.|||||+.+++++. ++|++|+..+.. ..+..
T Consensus 95 ~~d~~~~~~~~l~~~----~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e 169 (723)
T 1xfd_A 95 LSKIPHGDPQSLDPP----EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE 169 (723)
T ss_dssp EEESSSCCCEECCCT----TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred EEECCCCceEeccCC----ccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence 666765555555431 111111455789999999998876 789999987543 11122
Q ss_pred ----CceEEEECCCCcEEEEeecC
Q 003205 218 ----LSQKMAVSPNGNFVACFTHD 237 (839)
Q Consensus 218 ----~i~~ia~Spng~~iA~~~~~ 237 (839)
.+..+++||||+.||+.+.+
T Consensus 170 e~~~~~~~~~~SpDg~~la~~~~~ 193 (723)
T 1xfd_A 170 EILKTHIAHWWSPDGTRLAYAAIN 193 (723)
T ss_dssp TTSSSSEEEEECTTSSEEEEEEEE
T ss_pred EeccCcceEEECCCCCEEEEEEEC
Confidence 23789999999999998755
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.03 E-value=2.5e-08 Score=107.92 Aligned_cols=205 Identities=9% Similarity=0.038 Sum_probs=129.2
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCe-EEEE-EeCCeEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICV-VQDGTVY 111 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v-~~dGtv~ 111 (839)
...++++|+|+.+++...... ....++.|.+|+. .|+.+.++... +.+.++.|+|+++ +++. ..+++|.
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~-----~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSR-----KLDKGGVVYRLDPVTLEVTQAIHND---LKPFGATINNTTQTLWFGNTVNSAVT 114 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCT-----TTEESEEEEEECTTTCCEEEEEEES---SCCCSEEEETTTTEEEEEETTTTEEE
T ss_pred ccceEECCCCCEEEEEcCCCc-----CCCCCccEEEEcCCCCeEEEEEecC---CCcceEEECCCCCEEEEEecCCCEEE
Confidence 457899999999988762100 0012679999996 67888888763 4578899999998 5444 4469999
Q ss_pred EEeC-CCCcc-ccCCCCCccc---cccCeEEEEEECCeE-EEEec---CCeEEEEecCCCce-EEEcCCCCCCCCCceEE
Q 003205 112 RYNI-HAELI-EPNASMGKEC---FEENVVECVFWGNGV-VCVTE---ANRYFCMADFATMK-VCELARPEVEELPHCVA 181 (839)
Q Consensus 112 l~~~-~G~~~-~~~~g~~~~~---~~~~V~~~~~~~~G~-v~~t~---~~~~~~v~~~~~~~-~~~l~~~~~~~~~~~w~ 181 (839)
+|+. .|+.. .+..+..... ....+..+.++++|- ++++. ++.++.+ +..+.. ...++. .+..+.+.
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~-d~~~~~~~~~~~~--~~~~~~~~- 190 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVV-DGGNIKLKTAIQN--TGKMSTGL- 190 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEE-ETTTTEEEEEECC--CCTTCCCC-
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEE-cCCCCceEEEecC--CCCccceE-
Confidence 9986 46653 2333221000 011267788898764 34443 3345544 444433 333331 11223332
Q ss_pred EeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cc----cCCCceEEEECCCCcEEEEeecC-CeEEEEecCCCCcc
Q 003205 182 VIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KV----DDTLSQKMAVSPNGNFVACFTHD-GRLVVNNTNFSSPV 251 (839)
Q Consensus 182 vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~----~~~~i~~ia~Spng~~iA~~~~~-g~i~i~ssd~~~~l 251 (839)
.+||+|+.++..+.++.|++||..... .. +...+..+++||+|+.+...+.+ +.|++|+.+-.+.+
T Consensus 191 ----~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 266 (353)
T 3vgz_A 191 ----ALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNIL 266 (353)
T ss_dssp ----EEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEE
T ss_pred ----EECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 356699998888889999999987543 11 23446789999999987776654 78999987645554
Q ss_pred cccc
Q 003205 252 IDES 255 (839)
Q Consensus 252 ~e~~ 255 (839)
..+.
T Consensus 267 ~~~~ 270 (353)
T 3vgz_A 267 AKVA 270 (353)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 145
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.01 E-value=1.2e-08 Score=110.43 Aligned_cols=187 Identities=10% Similarity=0.016 Sum_probs=110.3
Q ss_pred CeEEEeecCC----CeE-EEEEe--------------------CCeEEEEeC--CCCccccCCCCCccccccCeEEEEEE
Q 003205 89 RLIGMSWSED----QTL-ICVVQ--------------------DGTVYRYNI--HAELIEPNASMGKECFEENVVECVFW 141 (839)
Q Consensus 89 ~I~~~~fs~d----e~L-v~v~~--------------------dGtv~l~~~--~G~~~~~~~g~~~~~~~~~V~~~~~~ 141 (839)
.|..+.|+|| ++. ++.+. |++|++|++ +|+......+| ...|..+.|+
T Consensus 113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~-----~~~v~~l~fs 187 (356)
T 2w18_A 113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLM-----PPEETILTFA 187 (356)
T ss_dssp EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEEC-----CCSSCEEEEE
T ss_pred ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccC-----CCceeeEEee
Confidence 4667788888 664 44332 777777754 46654433344 2334444555
Q ss_pred C---CeEEEEecCC-eEEEEecCCCce-EEEcCCCCCCCCCceEEEeCCCCCCCCcEEEE------------EEeCCeEE
Q 003205 142 G---NGVVCVTEAN-RYFCMADFATMK-VCELARPEVEELPHCVAVIEPKYTMTGSVEVL------------IGTDAGIL 204 (839)
Q Consensus 142 ~---~G~v~~t~~~-~~~~v~~~~~~~-~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~------------~s~d~tv~ 204 (839)
+ +|-.+++++. ....+||..+.+ ...|.. +..+...+....|||+|.+++. .+.|++|+
T Consensus 188 ~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g----~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIk 263 (356)
T 2w18_A 188 EVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHI----DDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLI 263 (356)
T ss_dssp EEETSTTEEEEEETTSEEEEEETTTCCEEEEEEC----CC---CCCEEEEEEETTEEEEEEC------------CCEEEE
T ss_pred ccCCCCceEEEecCCCcEEEEECCCCcEEEEEcC----CCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEE
Confidence 4 6677777554 467788887543 445532 1111122323357889988754 44588999
Q ss_pred EEecCCccc----------ccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEE
Q 003205 205 MLDEDGVQK----------VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVL 274 (839)
Q Consensus 205 l~~~~~~~~----------~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv 274 (839)
+|+..+... ++.+.+. +.+.+|.++|+++.||+|+||+..-++.+.++..+.. .+.
T Consensus 264 lWd~~tgk~l~v~~~~~p~Gh~~~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~-~vv----------- 329 (356)
T 2w18_A 264 VINPKTTLSVGVMLYCLPPGQAGRFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSD-QHW----------- 329 (356)
T ss_dssp EEETTTTEEEEEEEECCCTTCCCCEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC---CCC-----------
T ss_pred EEECCCCEEEEEEEeeccCCCcceeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCC-CeE-----------
Confidence 999775431 2233333 3333477899999999999999776666655433310 000
Q ss_pred EEecCEEEEEcCCCCceEeccCCCeEEeecCCc-eEEEc
Q 003205 275 LYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDG-VRILS 312 (839)
Q Consensus 275 ~~~~~~l~lig~~~~~v~f~~~~~~~l~~E~DG-vRIit 312 (839)
..+.|++|+..+++...|| ||||.
T Consensus 330 --------------s~vafSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 330 --------------SFVKWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp --------------CEEEECSSSSEEEEECTTSCEEEEE
T ss_pred --------------EEEEECCCCCEEEEEECCCcEEEec
Confidence 1367788888889999998 99996
No 146
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=98.98 E-value=2.5e-08 Score=107.14 Aligned_cols=216 Identities=12% Similarity=0.038 Sum_probs=130.9
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CC---CceeEEEecCCCCCeEEEeecCCCe-EEEEE-eC
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AG---VLISETVWKNPGGRLIGMSWSEDQT-LICVV-QD 107 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G---~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~-~d 107 (839)
....++++|+|..+++... .++.|.+|+. +| +.+..+..+ ..+.++.|+|+++ ++++. .+
T Consensus 85 ~~~~~~~s~dg~~l~~~~~-----------~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~ 150 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSY-----------NAGNVSVTRLEDGLPVGVVDVVEGL---DGCHSANISPDNRTLWVPALKQ 150 (343)
T ss_dssp CCSEEEECTTSSEEEEEET-----------TTTEEEEEEEETTEEEEEEEEECCC---TTBCCCEECTTSSEEEEEEGGG
T ss_pred CCcEEEEcCCCCEEEEEec-----------CCCeEEEEECCCCccccccccccCC---CCceEEEECCCCCEEEEecCCC
Confidence 4567899999998877752 4788999997 33 344444322 5688999999997 55555 79
Q ss_pred CeEEEEeCC--CCcc-----ccCCCCCccccccCeEEEEEECCeE-EEEec-CCeEEEEecCCC--ce---EEEcCCCCC
Q 003205 108 GTVYRYNIH--AELI-----EPNASMGKECFEENVVECVFWGNGV-VCVTE-ANRYFCMADFAT--MK---VCELARPEV 173 (839)
Q Consensus 108 Gtv~l~~~~--G~~~-----~~~~g~~~~~~~~~V~~~~~~~~G~-v~~t~-~~~~~~v~~~~~--~~---~~~l~~~~~ 173 (839)
|+|++|++. |++. ...... ...+..+.++++|. ++++. ...-..+++.+. .. ...+...+.
T Consensus 151 ~~v~~~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~ 225 (343)
T 1ri6_A 151 DRICLFTVSDDGHLVAQDPAEVTTVE-----GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPE 225 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEEEECST-----TCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCT
T ss_pred CEEEEEEecCCCceeeecccccccCC-----CCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCc
Confidence 999999864 5542 122212 33567788999885 44443 223333444421 11 112221111
Q ss_pred CCCCceEEEeCCCCCCCCcEEEEEE-eCCeEEEEecC--Cc--c----cccCCCceEEEECCCCcEEEEee-cCCeEEEE
Q 003205 174 EELPHCVAVIEPKYTMTGSVEVLIG-TDAGILMLDED--GV--Q----KVDDTLSQKMAVSPNGNFVACFT-HDGRLVVN 243 (839)
Q Consensus 174 ~~~~~~w~vi~~~~S~~~~~~v~~s-~d~tv~l~~~~--~~--~----~~~~~~i~~ia~Spng~~iA~~~-~~g~i~i~ 243 (839)
+.....+ +....|||+|+.++... .+++|.+|+.+ +. . ....+.+..+++||+|+++++.+ .++.+.+|
T Consensus 226 ~~~~~~~-~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~ 304 (343)
T 1ri6_A 226 NFSDTRW-AADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVY 304 (343)
T ss_dssp TCCSCCC-EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEE
T ss_pred cccccCC-ccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEE
Confidence 1111111 11224677998776555 58899999987 22 1 11233478999999999888887 57899999
Q ss_pred ecCCCC----ccccccCCCCCCCCceeeecCc
Q 003205 244 NTNFSS----PVIDESCESALPPEQIAWCGMD 271 (839)
Q Consensus 244 ssd~~~----~l~e~~~~~~~~p~~~~WcG~d 271 (839)
..|... .+.++... ..|..++|.++.
T Consensus 305 ~~d~~~g~~~~~~~~~~g--~~p~~i~~~~~~ 334 (343)
T 1ri6_A 305 EIVGEQGLLHEKGRYAVG--QGPMWVVVNAHE 334 (343)
T ss_dssp EEETTTTEEEEEEEEECS--SSCCEEEEEEEC
T ss_pred EEcCCCceeeEccccccC--CCCeeEEEEccc
Confidence 655322 23334332 367777777543
No 147
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.93 E-value=2.7e-07 Score=97.29 Aligned_cols=196 Identities=11% Similarity=0.081 Sum_probs=129.6
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecC----CCCCeEEEee-cCCCeEEEEEe--C
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKN----PGGRLIGMSW-SEDQTLICVVQ--D 107 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~----~~~~I~~~~f-s~de~Lv~v~~--d 107 (839)
...++++|+|...+... .++.|.+|+.+|+.+.++.... ....+.++.| .+++.++++.. +
T Consensus 32 p~~v~~~~~g~l~v~~~------------~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~ 99 (286)
T 1q7f_A 32 PSGVAVNAQNDIIVADT------------NNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT 99 (286)
T ss_dssp EEEEEECTTCCEEEEEG------------GGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG
T ss_pred CceEEECCCCCEEEEEC------------CCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCC
Confidence 35788899987655543 4688999999999988875321 1146899999 57888877764 8
Q ss_pred CeEEEEeCCCCccccC-CCCCccccccCeEEEEEECCeEEEEec--CCeEEEEecCCCceEEEcCCCCCCCCCceEEEeC
Q 003205 108 GTVYRYNIHAELIEPN-ASMGKECFEENVVECVFWGNGVVCVTE--ANRYFCMADFATMKVCELARPEVEELPHCVAVIE 184 (839)
Q Consensus 108 Gtv~l~~~~G~~~~~~-~g~~~~~~~~~V~~~~~~~~G~v~~t~--~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~ 184 (839)
+.|++|+..|+..... .++ ...+..+.+.++|.++++. ++.++.++ .++.....+........|.+.+
T Consensus 100 ~~i~~~d~~g~~~~~~~~~~-----~~~~~~i~~~~~g~l~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~p~~i~--- 170 (286)
T 1q7f_A 100 HQIQIYNQYGQFVRKFGATI-----LQHPRGVTVDNKGRIIVVECKVMRVIIFD-QNGNVLHKFGCSKHLEFPNGVV--- 170 (286)
T ss_dssp CEEEEECTTSCEEEEECTTT-----CSCEEEEEECTTSCEEEEETTTTEEEEEC-TTSCEEEEEECTTTCSSEEEEE---
T ss_pred CEEEEECCCCcEEEEecCcc-----CCCceEEEEeCCCCEEEEECCCCEEEEEc-CCCCEEEEeCCCCccCCcEEEE---
Confidence 8999999989875432 222 3457788888888777774 34565544 4444444443211102344332
Q ss_pred CCCCCCCcEEEEEEeCCeEEEEecCCcc----c--ccCCCceEEEECCCCcEEEEeecCC-eEEEEecCCCCccccc
Q 003205 185 PKYTMTGSVEVLIGTDAGILMLDEDGVQ----K--VDDTLSQKMAVSPNGNFVACFTHDG-RLVVNNTNFSSPVIDE 254 (839)
Q Consensus 185 ~~~S~~~~~~v~~s~d~tv~l~~~~~~~----~--~~~~~i~~ia~Spng~~iA~~~~~g-~i~i~ssd~~~~l~e~ 254 (839)
++++|...+.-..+++|++|+.++.. . ........|+++|+|++++....++ .|.+|+.+ ++.+..+
T Consensus 171 --~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~ 244 (286)
T 1q7f_A 171 --VNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISAL 244 (286)
T ss_dssp --ECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEE
T ss_pred --ECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEE
Confidence 34478755444458899999988754 1 1124578999999999888777675 99999865 4444344
No 148
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=98.93 E-value=3.7e-09 Score=126.85 Aligned_cols=152 Identities=8% Similarity=0.036 Sum_probs=98.9
Q ss_pred CCeEEEeecCCCeEEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEe-cCCeEEEEecCCC----
Q 003205 88 GRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVT-EANRYFCMADFAT---- 162 (839)
Q Consensus 88 ~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t-~~~~~~~v~~~~~---- 162 (839)
..|.++.|||| ..++++.||++++|++.+........+ ...+..++++|+|..++. .+++++ +++..+
T Consensus 82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~~SpdG~~la~~~~~~i~-v~~~~~~~~~ 154 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVTYLFDT-----NEETASLDFSPVGDRVAYVRNHNLY-IARGGKLGEG 154 (706)
T ss_dssp CCCEEEEETTT-TEEEEEETTEEEEEETTTTEEEEEECC-----TTCCTTCEECTTSSEEEEEETTEEE-EEECBCTTSC
T ss_pred cCceeEEECCC-CeEEEEECCEEEEEECCCCceEEccCC-----cccccCCcCCCCCCEEEEEECCeEE-EEecCccccc
Confidence 35899999999 554455789999999765432222223 334667889999855444 455565 444544
Q ss_pred -ceEEEcCCCCCCCCCceEE----------EeCCCCCCCCcEEEEEEe--------------------------------
Q 003205 163 -MKVCELARPEVEELPHCVA----------VIEPKYTMTGSVEVLIGT-------------------------------- 199 (839)
Q Consensus 163 -~~~~~l~~~~~~~~~~~w~----------vi~~~~S~~~~~~v~~s~-------------------------------- 199 (839)
.....+...+. ....+. +..+.|||||+.+++.+.
T Consensus 155 ~g~~~~~~~~~~--~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~ 232 (706)
T 2z3z_A 155 MSRAIAVTIDGT--ETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPS 232 (706)
T ss_dssp CCCCEESCSCCB--TTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCC
T ss_pred CCCcEEeccCCC--CCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCC
Confidence 44444432111 100000 123458889999999883
Q ss_pred -CCeEEEEecCCcc--c-----ccCCCceEEEECCCCcEEEEeecCC-----eEEEEecCCC
Q 003205 200 -DAGILMLDEDGVQ--K-----VDDTLSQKMAVSPNGNFVACFTHDG-----RLVVNNTNFS 248 (839)
Q Consensus 200 -d~tv~l~~~~~~~--~-----~~~~~i~~ia~Spng~~iA~~~~~g-----~i~i~ssd~~ 248 (839)
+.+|++|+..+.. . .+...+..+++||||+.||+.+.++ +|++|+.+-+
T Consensus 233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g 294 (706)
T 2z3z_A 233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG 294 (706)
T ss_dssp CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence 4679999987643 1 2345688999999999999987665 7999987644
No 149
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=98.92 E-value=3e-08 Score=106.43 Aligned_cols=186 Identities=8% Similarity=0.091 Sum_probs=116.0
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC---CC--ceeEEEecCCCCCeEEEeecCCCeE-EEEEe-
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA---GV--LISETVWKNPGGRLIGMSWSEDQTL-ICVVQ- 106 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~---G~--ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~- 106 (839)
....++++|+|..+++... .++.|.+|+.+ |+ .+.++.. . +.+..+.|+|+++. +++..
T Consensus 39 ~~~~~~~spdg~~l~~~~~-----------~~~~v~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~s~dg~~l~~~~~~ 104 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVR-----------PEFRVLAYRIAPDDGALTFAAESAL-P--GSLTHISTDHQGQFVFVGSYN 104 (343)
T ss_dssp CCCCEEECTTSSEEEEEET-----------TTTEEEEEEECTTTCCEEEEEEEEC-S--SCCSEEEECTTSSEEEEEETT
T ss_pred CCceEEECCCCCEEEEeec-----------CCCeEEEEEecCCCCceeecccccc-C--CCCcEEEEcCCCCEEEEEecC
Confidence 3457899999998888862 24899999975 44 3344543 2 57889999999984 45544
Q ss_pred CCeEEEEeC-CCC---ccccCCCCCccccccCeEEEEEECCeEEEEec---CCeEEEEecCCC-ceEEE-----cCCCCC
Q 003205 107 DGTVYRYNI-HAE---LIEPNASMGKECFEENVVECVFWGNGVVCVTE---ANRYFCMADFAT-MKVCE-----LARPEV 173 (839)
Q Consensus 107 dGtv~l~~~-~G~---~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~---~~~~~~v~~~~~-~~~~~-----l~~~~~ 173 (839)
+|+|++|++ .|. ......+ ...+..+.++++|..+++. ++.++ ++++.. ..... +.. +.
T Consensus 105 ~~~i~~~d~~~~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~~v~-~~d~~~~~~~~~~~~~~~~~-~~ 176 (343)
T 1ri6_A 105 AGNVSVTRLEDGLPVGVVDVVEG------LDGCHSANISPDNRTLWVPALKQDRIC-LFTVSDDGHLVAQDPAEVTT-VE 176 (343)
T ss_dssp TTEEEEEEEETTEEEEEEEEECC------CTTBCCCEECTTSSEEEEEEGGGTEEE-EEEECTTSCEEEEEEEEEEC-ST
T ss_pred CCeEEEEECCCCccccccccccC------CCCceEEEECCCCCEEEEecCCCCEEE-EEEecCCCceeeeccccccc-CC
Confidence 899999987 332 2222211 2346677888888544333 34444 344432 32221 111 11
Q ss_pred CCCCceEEEeCCCCCCCCcEEEEEE-eCCeEEEEecCC---cc----c---cc-----CCCceEEEECCCCcEEEEee-c
Q 003205 174 EELPHCVAVIEPKYTMTGSVEVLIG-TDAGILMLDEDG---VQ----K---VD-----DTLSQKMAVSPNGNFVACFT-H 236 (839)
Q Consensus 174 ~~~~~~w~vi~~~~S~~~~~~v~~s-~d~tv~l~~~~~---~~----~---~~-----~~~i~~ia~Spng~~iA~~~-~ 236 (839)
+..|.+ + .|+|+|+.++..+ .+++|.+|+.+. .. . .. ...+..+++||+|++++..+ .
T Consensus 177 ~~~~~~--~---~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~ 251 (343)
T 1ri6_A 177 GAGPRH--M---VFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT 251 (343)
T ss_dssp TCCEEE--E---EECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT
T ss_pred CCCcce--E---EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC
Confidence 122332 2 3566999776666 588999999853 11 1 11 12355799999999887554 6
Q ss_pred CCeEEEEecC
Q 003205 237 DGRLVVNNTN 246 (839)
Q Consensus 237 ~g~i~i~ssd 246 (839)
+++|.+|+.+
T Consensus 252 ~~~i~v~d~~ 261 (343)
T 1ri6_A 252 ASLITVFSVS 261 (343)
T ss_dssp TTEEEEEEEC
T ss_pred CCEEEEEEEc
Confidence 8899999865
No 150
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.92 E-value=5e-08 Score=107.37 Aligned_cols=189 Identities=15% Similarity=0.089 Sum_probs=117.1
Q ss_pred EEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeCC
Q 003205 38 VACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIH 116 (839)
Q Consensus 38 va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~ 116 (839)
.++||+|..||..++. .....|.+|+..|.....+.-.. ...+....||||++ |+.+..++++++|++.
T Consensus 41 ~~~SpDg~~l~~~~~~---------~g~~~l~~~d~~~g~~~~lt~~~-~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~ 110 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAF---------DGPWNYYLLDLNTQVATQLTEGR-GDNTFGGFLSPDDDALFYVKDGRNLMRVDLA 110 (388)
T ss_dssp CCBCTTSCEEEEEECT---------TSSCEEEEEETTTCEEEECCCSS-CBCSSSCEECTTSSEEEEEETTTEEEEEETT
T ss_pred ccCCCCCCEEEEEEcC---------CCCceEEEEeCCCCceEEeeeCC-CCCccceEEcCCCCEEEEEeCCCeEEEEECC
Confidence 6899999999999852 12346888998766555544332 13444678999997 6778888899999976
Q ss_pred C-CccccCCCCCccccccCeEE--EEEECCeEEEEec------------------------CCeEEEEecCCCceEEEcC
Q 003205 117 A-ELIEPNASMGKECFEENVVE--CVFWGNGVVCVTE------------------------ANRYFCMADFATMKVCELA 169 (839)
Q Consensus 117 G-~~~~~~~g~~~~~~~~~V~~--~~~~~~G~v~~t~------------------------~~~~~~v~~~~~~~~~~l~ 169 (839)
+ +.......+ ...+.. ..++++|..++.. ..+++.+ +..+.....+.
T Consensus 111 ~g~~~~~~~~~-----~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-d~~~g~~~~l~ 184 (388)
T 3pe7_A 111 TLEENVVYQVP-----AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV-DLKTGESTVIL 184 (388)
T ss_dssp TCCEEEEEECC-----TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE-ETTTCCEEEEE
T ss_pred CCcceeeeech-----hhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE-ECCCCceEEee
Confidence 4 332221111 111221 2335677666521 1234433 34444444443
Q ss_pred CCCCCCCCceEEEeCCCCCC-CCcEEEEEEeC------CeEEEEecCCcc--c--ccC--CCceEEEECCCCcEEEEeec
Q 003205 170 RPEVEELPHCVAVIEPKYTM-TGSVEVLIGTD------AGILMLDEDGVQ--K--VDD--TLSQKMAVSPNGNFVACFTH 236 (839)
Q Consensus 170 ~~~~~~~~~~w~vi~~~~S~-~~~~~v~~s~d------~tv~l~~~~~~~--~--~~~--~~i~~ia~Spng~~iA~~~~ 236 (839)
. ... + +..+.||| ||+.+++.+.+ ..|++++.++.. . .+. ..+...++||||+.||+.+.
T Consensus 185 ~----~~~--~-~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~ 257 (388)
T 3pe7_A 185 Q----ENQ--W-LGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSY 257 (388)
T ss_dssp E----ESS--C-EEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred c----CCc--c-ccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEec
Confidence 2 111 1 34457899 99999988864 388999987653 1 122 24778899999999988665
Q ss_pred C-C----eEEEEecCCCC
Q 003205 237 D-G----RLVVNNTNFSS 249 (839)
Q Consensus 237 ~-g----~i~i~ssd~~~ 249 (839)
. + +|++|+.+-++
T Consensus 258 ~~~~~~~~l~~~d~~~g~ 275 (388)
T 3pe7_A 258 LKGSPDRFIYSADPETLE 275 (388)
T ss_dssp ETTCCCEEEEEECTTTCC
T ss_pred CCCCCcceEEEEecCCCc
Confidence 2 2 39999876444
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=98.91 E-value=7.1e-08 Score=104.68 Aligned_cols=196 Identities=12% Similarity=0.156 Sum_probs=119.3
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC--CC--ceeEEEecCC-------CCCeEEEeecCCCeEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA--GV--LISETVWKNP-------GGRLIGMSWSEDQTLI 102 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~--G~--ll~ti~~~~~-------~~~I~~~~fs~de~Lv 102 (839)
....++++|+|..+++... .+++|.+|+.+ |. .+..+..... ...+.++.|+||++++
T Consensus 87 ~p~~~a~spdg~~l~~~~~-----------~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~ 155 (347)
T 3hfq_A 87 PPAYVAVDEARQLVYSANY-----------HKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLA 155 (347)
T ss_dssp CCSEEEEETTTTEEEEEET-----------TTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEE
T ss_pred CCEEEEECCCCCEEEEEeC-----------CCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEE
Confidence 4457899999998888862 46899999953 43 3444443220 1248899999999964
Q ss_pred EE-EeCCeEEEEeCC--CCcccc---CCCCCccccccCeEEEEEECCeE-EEEec--CCeEEEEecCC--CceEE---Ec
Q 003205 103 CV-VQDGTVYRYNIH--AELIEP---NASMGKECFEENVVECVFWGNGV-VCVTE--ANRYFCMADFA--TMKVC---EL 168 (839)
Q Consensus 103 ~v-~~dGtv~l~~~~--G~~~~~---~~g~~~~~~~~~V~~~~~~~~G~-v~~t~--~~~~~~v~~~~--~~~~~---~l 168 (839)
+. ..+++|++|++. |++... .... ...+..+.|+++|. ++++. ++.+. +++++ ..... .+
T Consensus 156 v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-----g~~p~~~~~spdg~~l~v~~~~~~~v~-v~~~~~~~g~~~~~~~~ 229 (347)
T 3hfq_A 156 VIDLGSDKVYVYNVSDAGQLSEQSVLTMEA-----GFGPRHLVFSPDGQYAFLAGELSSQIA-SLKYDTQTGAFTQLGIV 229 (347)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECCT-----TCCEEEEEECTTSSEEEEEETTTTEEE-EEEEETTTTEEEEEEEE
T ss_pred EEeCCCCEEEEEEECCCCcEEEeeeEEcCC-----CCCCceEEECCCCCEEEEEeCCCCEEE-EEEecCCCCceEEeeee
Confidence 33 357899999865 655321 1211 23567789999986 44443 23332 33322 12222 22
Q ss_pred CCCCCCCCCceEEEeCCCCCCCCcEEEEEEe-CCeEEEEecC--Ccc------cccCCCceEEEECCCCcEEEEeecC-C
Q 003205 169 ARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDED--GVQ------KVDDTLSQKMAVSPNGNFVACFTHD-G 238 (839)
Q Consensus 169 ~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~-d~tv~l~~~~--~~~------~~~~~~i~~ia~Spng~~iA~~~~~-g 238 (839)
...+.+.....+ +....|||||+.++..+. +++|.+|+.+ |.. ..+......++|||||++|+..+.+ +
T Consensus 230 ~~~~~~~~~~~~-~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 308 (347)
T 3hfq_A 230 KTIPADYTAHNG-AAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTD 308 (347)
T ss_dssp ESSCTTCCSCCE-EEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTT
T ss_pred eecCCCCCCCCc-ceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCC
Confidence 211111011111 222357789998755554 8899999976 221 2223457899999999999888764 7
Q ss_pred eEEEEecCC
Q 003205 239 RLVVNNTNF 247 (839)
Q Consensus 239 ~i~i~ssd~ 247 (839)
++.+|..|.
T Consensus 309 ~v~v~~~d~ 317 (347)
T 3hfq_A 309 NATLYARDL 317 (347)
T ss_dssp EEEEEEECT
T ss_pred cEEEEEEeC
Confidence 899996553
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=98.90 E-value=4.5e-08 Score=106.26 Aligned_cols=194 Identities=12% Similarity=0.092 Sum_probs=116.2
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCC---ceeEEEecCCCCCeEEEeecCCCe-EEEEE-eCCe
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV---LISETVWKNPGGRLIGMSWSEDQT-LICVV-QDGT 109 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~---ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~-~dGt 109 (839)
...++++|+|. +.+.... ..++.|.+|+..+. .+.++..+. ..+..+.|+||++ |+++. .+|+
T Consensus 42 p~~~a~spdg~-l~~~~~~---------~~~~~v~~~~~~~g~~~~~~~~~~~~--~~p~~~a~spdg~~l~~~~~~~~~ 109 (347)
T 3hfq_A 42 PTYLALSAKDC-LYSVDKE---------DDEGGIAAWQIDGQTAHKLNTVVAPG--TPPAYVAVDEARQLVYSANYHKGT 109 (347)
T ss_dssp CCCEEECTTCE-EEEEEEE---------TTEEEEEEEEEETTEEEEEEEEEEES--CCCSEEEEETTTTEEEEEETTTTE
T ss_pred cceEEEccCCe-EEEEEec---------CCCceEEEEEecCCcEEEeeeeecCC--CCCEEEEECCCCCEEEEEeCCCCE
Confidence 34689999999 5544310 13688999997543 455555455 7889999999998 56666 6899
Q ss_pred EEEEeCC--CCccc---cCC-CCCcc--ccccCeEEEEEECCeEEEEecC--CeEEEEecCC-CceEEEcCC--CCCCCC
Q 003205 110 VYRYNIH--AELIE---PNA-SMGKE--CFEENVVECVFWGNGVVCVTEA--NRYFCMADFA-TMKVCELAR--PEVEEL 176 (839)
Q Consensus 110 v~l~~~~--G~~~~---~~~-g~~~~--~~~~~V~~~~~~~~G~v~~t~~--~~~~~v~~~~-~~~~~~l~~--~~~~~~ 176 (839)
|++|++. |+... ... +.... .....+..+.++++|.++++.. +.++ ++++. +.....+.. ...+..
T Consensus 110 v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~-~~~~~~~g~~~~~~~~~~~~g~~ 188 (347)
T 3hfq_A 110 AEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVY-VYNVSDAGQLSEQSVLTMEAGFG 188 (347)
T ss_dssp EEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEE-EEEECTTSCEEEEEEEECCTTCC
T ss_pred EEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEE-EEEECCCCcEEEeeeEEcCCCCC
Confidence 9999763 44421 111 11000 0022477789999988555543 3343 33343 222222211 011123
Q ss_pred CceEEEeCCCCCCCCcEEEEEEe-CCeEEEEecCC---cc----c--ccC------CCceEEEECCCCcEEEEe-ecCCe
Q 003205 177 PHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDEDG---VQ----K--VDD------TLSQKMAVSPNGNFVACF-THDGR 239 (839)
Q Consensus 177 ~~~w~vi~~~~S~~~~~~v~~s~-d~tv~l~~~~~---~~----~--~~~------~~i~~ia~Spng~~iA~~-~~~g~ 239 (839)
|.. ..|||||+.++.++. +++|.+|+.+. .. . ... .....++|||||++|+.. ..+++
T Consensus 189 p~~-----~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~ 263 (347)
T 3hfq_A 189 PRH-----LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT 263 (347)
T ss_dssp EEE-----EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE
T ss_pred Cce-----EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE
Confidence 332 246779997666554 78889988663 21 1 111 347789999999988544 45788
Q ss_pred EEEEecC
Q 003205 240 LVVNNTN 246 (839)
Q Consensus 240 i~i~ssd 246 (839)
|.+|+.+
T Consensus 264 v~v~~~~ 270 (347)
T 3hfq_A 264 LAVFAVT 270 (347)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9999754
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=98.90 E-value=7e-08 Score=104.01 Aligned_cols=202 Identities=12% Similarity=0.010 Sum_probs=125.3
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCC----CCCeEEEeecCCCeE-EEEEeC
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNP----GGRLIGMSWSEDQTL-ICVVQD 107 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~----~~~I~~~~fs~de~L-v~v~~d 107 (839)
....++++|+|..+.+... .++.|.+|+. .|+.+.++..... ...+.++.|+||++. ++...+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~-----------~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 112 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNN-----------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNP 112 (349)
T ss_dssp SSCEEEECTTSSEEEEEET-----------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEE
T ss_pred CCceeEECCCCCEEEEEeC-----------CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEccc
Confidence 3568899999997776652 4789999996 4777878875430 023788999999974 555554
Q ss_pred ------------CeEEEEeCCC-Ccccc--CCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCc-eEEEcCCC
Q 003205 108 ------------GTVYRYNIHA-ELIEP--NASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATM-KVCELARP 171 (839)
Q Consensus 108 ------------Gtv~l~~~~G-~~~~~--~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~-~~~~l~~~ 171 (839)
++|.+|++.. +..+. ...+ ...+..+.++++|.+++ .++.++.+ +..+. ....++..
T Consensus 113 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~s~dg~l~~-~~~~i~~~-d~~~~~~~~~~~~~ 185 (349)
T 1jmx_B 113 TQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-----PRQVYLMRAADDGSLYV-AGPDIYKM-DVKTGKYTVALPLR 185 (349)
T ss_dssp EEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-----CSSCCCEEECTTSCEEE-ESSSEEEE-CTTTCCEEEEECST
T ss_pred ccccccccccCCCeEEEEECCCccccceeeeccC-----CCcccceeECCCCcEEE-ccCcEEEE-eCCCCceecccccc
Confidence 9999998753 32211 1111 23466777889998444 55565544 44332 22333221
Q ss_pred CC----------------CCCCce----EEE-----------------------------------------eCCCCCC-
Q 003205 172 EV----------------EELPHC----VAV-----------------------------------------IEPKYTM- 189 (839)
Q Consensus 172 ~~----------------~~~~~~----w~v-----------------------------------------i~~~~S~- 189 (839)
.. +...+. +.+ ....+||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 265 (349)
T 1jmx_B 186 NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK 265 (349)
T ss_dssp TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSS
T ss_pred ccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCC
Confidence 10 000000 000 1113567
Q ss_pred CCcEEEEEEeCCeEEEEecCCcc----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcccccc
Q 003205 190 TGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDES 255 (839)
Q Consensus 190 ~~~~~v~~s~d~tv~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~ 255 (839)
+|+.++.. +++|++||..... ......+..+++||+|+.|++.+.+++|++|+.+-.+.+.++.
T Consensus 266 dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 266 DPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp CTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 88876655 8899999977543 1223446789999999988887788899999876555555443
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=98.86 E-value=6.3e-08 Score=104.34 Aligned_cols=102 Identities=10% Similarity=0.017 Sum_probs=66.4
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCeE-EEE-EeCCeEEEE
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTL-ICV-VQDGTVYRY 113 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v-~~dGtv~l~ 113 (839)
-++++++|..+++.. .+++|.+|+. +|+.+.++.... ...+..+.|+||++. ++. ..+++|.+|
T Consensus 4 g~~~~~~~~~~v~~~------------~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~~~v~~~~~~~i~~~ 70 (349)
T 1jmx_B 4 GPALKAGHEYMIVTN------------YPNNLHVVDVASDTVYKSCVMPD-KFGPGTAMMAPDNRTAYVLNNHYGDIYGI 70 (349)
T ss_dssp CCCCCTTCEEEEEEE------------TTTEEEEEETTTTEEEEEEECSS-CCSSCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred cccccCCCEEEEEeC------------CCCeEEEEECCCCcEEEEEecCC-CCCCceeEECCCCCEEEEEeCCCCcEEEE
Confidence 356788877777765 5799999995 678888887643 136889999999974 333 368999999
Q ss_pred eCC-CCcc-ccCCCCCccccccCeEEEEEECCeEEEEecC
Q 003205 114 NIH-AELI-EPNASMGKECFEENVVECVFWGNGVVCVTEA 151 (839)
Q Consensus 114 ~~~-G~~~-~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~ 151 (839)
++. |+.. ....++........+..+.++++|..+++.+
T Consensus 71 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 110 (349)
T 1jmx_B 71 DLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV 110 (349)
T ss_dssp ETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred eCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEc
Confidence 975 5543 2222221000011255678899886555543
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=98.82 E-value=2.9e-08 Score=116.37 Aligned_cols=187 Identities=13% Similarity=0.082 Sum_probs=125.2
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeE-EEEEeC----CeEE
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQD----GTVY 111 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~d----Gtv~ 111 (839)
..++||+|.-++++.. ..+.+.||+..+.....+..+. + .++.|||||+. +.++.| ++++
T Consensus 114 ~~~~s~dg~~~~~~s~-----------~~~~~~l~d~~~g~~~~l~~~~--~--~~~~~spDG~~la~~~~~~~~~~~i~ 178 (582)
T 3o4h_A 114 ILSGVDTGEAVVFTGA-----------TEDRVALYALDGGGLRELARLP--G--FGFVSDIRGDLIAGLGFFGGGRVSLF 178 (582)
T ss_dssp EEEEEECSSCEEEEEE-----------CSSCEEEEEEETTEEEEEEEES--S--CEEEEEEETTEEEEEEEEETTEEEEE
T ss_pred eeeeCCCCCeEEEEec-----------CCCCceEEEccCCcEEEeecCC--C--ceEEECCCCCEEEEEEEcCCCCeEEE
Confidence 6689999987777652 2344459998777777776555 4 88999999985 567777 7899
Q ss_pred EEeCC-CCccccCCCCCccccccCeEEEEEECCeEEEEecC--C-eEEEEecCCCceEEEcCCCCCC-CCCceEEEeCCC
Q 003205 112 RYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEA--N-RYFCMADFATMKVCELARPEVE-ELPHCVAVIEPK 186 (839)
Q Consensus 112 l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~--~-~~~~v~~~~~~~~~~l~~~~~~-~~~~~w~vi~~~ 186 (839)
+|++. |+.. ...++ ...+....|+|||..+++++ + .-..+++.++.....+...... ..+..+..-.+.
T Consensus 179 ~~d~~~g~~~-~l~~~-----~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (582)
T 3o4h_A 179 TSNLSSGGLR-VFDSG-----EGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLG 252 (582)
T ss_dssp EEETTTCCCE-EECCS-----SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEE
T ss_pred EEcCCCCCce-EeecC-----CCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhcccccee
Confidence 99975 5544 34445 45578899999998877643 3 1234566665554433221000 001111111122
Q ss_pred CCCCCcEEEEEEeCCeEEEEecCCcc-cccCCCceEEEECCCCcEEEEeecCCe---EEEEecC
Q 003205 187 YTMTGSVEVLIGTDAGILMLDEDGVQ-KVDDTLSQKMAVSPNGNFVACFTHDGR---LVVNNTN 246 (839)
Q Consensus 187 ~S~~~~~~v~~s~d~tv~l~~~~~~~-~~~~~~i~~ia~Spng~~iA~~~~~g~---i~i~ssd 246 (839)
|||||.+.+..+.++++.+|+. |.. ....+.+..++|| +|+.+++.+.+.+ +++++.+
T Consensus 253 ~spdg~~~~~~~~~g~~~l~~~-g~~~~~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 253 YLPDGRLAVVARREGRSAVFID-GERVEAPQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp ECTTSCEEEEEEETTEEEEEET-TEEECCCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred EcCCCcEEEEEEcCCcEEEEEE-CCeeccCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 8899977777888999999999 654 3445678899999 9999998887754 7777644
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=98.82 E-value=1.5e-07 Score=113.20 Aligned_cols=203 Identities=11% Similarity=0.006 Sum_probs=116.9
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCce---eEEEecCCCCCeEEEeecCCCeEEEEEeCCeEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLI---SETVWKNPGGRLIGMSWSEDQTLICVVQDGTVY 111 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll---~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~ 111 (839)
...+++||+|..||...+..+.... +.+++|++|+..|... ..+ . +.+..+.|||||+.+....|++|+
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~---s~~~~i~~~d~~~g~~~~~~~l---~--~~~~~~~~SPDG~~la~~~~~~i~ 133 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRY---SYTATYYIYDLSNGEFVRGNEL---P--RPIQYLCWSPVGSKLAYVYQNNIY 133 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSS---CEEEEEEEEETTTTEECCSSCC---C--SSBCCEEECSSTTCEEEEETTEEE
T ss_pred eeeEEECCCCCeEEEEecCceeEEe---ecceEEEEEECCCCccccceec---C--cccccceECCCCCEEEEEECCeEE
Confidence 6789999999999998742211100 1368999999876554 333 2 567889999999865445689999
Q ss_pred EEeCC-CCccccC-CCCCcccc---c---------cCeEEEEEECCeEEEEecCC-----e-------------------
Q 003205 112 RYNIH-AELIEPN-ASMGKECF---E---------ENVVECVFWGNGVVCVTEAN-----R------------------- 153 (839)
Q Consensus 112 l~~~~-G~~~~~~-~g~~~~~~---~---------~~V~~~~~~~~G~v~~t~~~-----~------------------- 153 (839)
+|+.. |+..+.. -++..... . .....+.++|||..++..+. .
T Consensus 134 ~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 213 (719)
T 1z68_A 134 LKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP 213 (719)
T ss_dssp EESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred EEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence 99874 4443322 22200000 0 11136788999977765431 1
Q ss_pred -----------EEEEecCCCceE---EEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeC----CeEEEEe----cCCc
Q 003205 154 -----------YFCMADFATMKV---CELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTD----AGILMLD----EDGV 211 (839)
Q Consensus 154 -----------~~~v~~~~~~~~---~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d----~tv~l~~----~~~~ 211 (839)
-..+++..+... ..+..+. ....+...+..+.|||||...+..... ..|++|+ ..+.
T Consensus 214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g 292 (719)
T 1z68_A 214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPA-MIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW 292 (719)
T ss_dssp CCBTTSCCCEEEEEEEESSCHHHHCCEECCCCH-HHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE
T ss_pred CCCCCCCCCeeEEEEEECCCCCccceeEccCCc-cCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC
Confidence 122344443321 1221100 000122234455789998765554432 2488899 5543
Q ss_pred c----c-----ccCCCce-----EEEECCCCcEEEEee--cCC--eEEEEecC
Q 003205 212 Q----K-----VDDTLSQ-----KMAVSPNGNFVACFT--HDG--RLVVNNTN 246 (839)
Q Consensus 212 ~----~-----~~~~~i~-----~ia~Spng~~iA~~~--~~g--~i~i~ssd 246 (839)
. . .+.+.+. .++|||||+.+++.+ .+| +|++|+.+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~ 345 (719)
T 1z68_A 293 DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDT 345 (719)
T ss_dssp ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSC
T ss_pred ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECC
Confidence 2 1 2344555 789999999877643 445 47777654
No 157
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.82 E-value=6.5e-08 Score=117.11 Aligned_cols=196 Identities=9% Similarity=-0.010 Sum_probs=124.4
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCC-C--CeEEEeecCCCeE-EEEEeC-
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPG-G--RLIGMSWSEDQTL-ICVVQD- 107 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~-~--~I~~~~fs~de~L-v~v~~d- 107 (839)
..+.++++|+|..++.. +++|++|+. .|+....+..+... - ...++.|||||+. ++.+.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~ 83 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--------------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYV 83 (740)
T ss_dssp CCCCEEECSSSEEEEEE--------------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEE
T ss_pred cccccEECCCCcEEEEc--------------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCe
Confidence 35589999999877764 478999996 45555555555410 1 1234789999985 555554
Q ss_pred --------CeEEEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEe-cCCeEEEEecCCCceEEEcCCCCCCC---
Q 003205 108 --------GTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVT-EANRYFCMADFATMKVCELARPEVEE--- 175 (839)
Q Consensus 108 --------Gtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t-~~~~~~~v~~~~~~~~~~l~~~~~~~--- 175 (839)
|.+.+||+.+...+...++ ...+..+.++|+|..++- .++++|. ++..+....++...+-..
T Consensus 84 ~~~r~~~~~~~~~~d~~~~~~~~l~~~-----~~~~~~~~~SPdG~~la~~~~~~i~~-~~~~~~~~~~lt~~g~~~~~~ 157 (740)
T 4a5s_A 84 KQWRHSYTASYDIYDLNKRQLITEERI-----PNNTQWVTWSPVGHKLAYVWNNDIYV-KIEPNLPSYRITWTGKEDIIY 157 (740)
T ss_dssp ECSSSCEEEEEEEEETTTTEECCSSCC-----CTTEEEEEECSSTTCEEEEETTEEEE-ESSTTSCCEECCSCCBTTTEE
T ss_pred eeEEEccceEEEEEECCCCcEEEcccC-----CCcceeeEECCCCCEEEEEECCeEEE-EECCCCceEEEcCCCCcccee
Confidence 6677999865543334444 456889999999965544 4566664 455555555654311100
Q ss_pred -CCceEE--------EeCCCCCCCCcEEEEEEeCC------------------------------------eEEEEecCC
Q 003205 176 -LPHCVA--------VIEPKYTMTGSVEVLIGTDA------------------------------------GILMLDEDG 210 (839)
Q Consensus 176 -~~~~w~--------vi~~~~S~~~~~~v~~s~d~------------------------------------tv~l~~~~~ 210 (839)
....|. ...+.|||||+.+++.+.|. +|++|+.++
T Consensus 158 ~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~ 237 (740)
T 4a5s_A 158 NGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDS 237 (740)
T ss_dssp ESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTS
T ss_pred cCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCC
Confidence 000110 01145899999999886432 578888876
Q ss_pred ---c---c--c--------ccCCCceEEEECCCCcEEEEeecCC----eEEEEecCCCC
Q 003205 211 ---V---Q--K--------VDDTLSQKMAVSPNGNFVACFTHDG----RLVVNNTNFSS 249 (839)
Q Consensus 211 ---~---~--~--------~~~~~i~~ia~Spng~~iA~~~~~g----~i~i~ssd~~~ 249 (839)
. . . .+...+..+++||||+.+|.....+ +|++|+.+-++
T Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 238 LSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp CCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred CCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 3 2 1 1455588999999999877765433 69999866444
No 158
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.81 E-value=2.4e-07 Score=98.13 Aligned_cols=184 Identities=11% Similarity=0.026 Sum_probs=129.2
Q ss_pred CCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCCCCcc-ccCCCCCccccccCeEEEEEE
Q 003205 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELI-EPNASMGKECFEENVVECVFW 141 (839)
Q Consensus 64 ~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~~-~~~~g~~~~~~~~~V~~~~~~ 141 (839)
.++.|.+|+. +|+.+.++..+. ...+.++.++|+|++++ +.++.|+.||..|++. ++..+. ...+..+.+.
T Consensus 13 ~~~~v~~~d~~tG~~~w~~~~~~-~~~~~~~~~~pdG~ilv-s~~~~V~~~d~~G~~~W~~~~~~-----~~~~~~~~~~ 85 (276)
T 3no2_A 13 GWNKIAIINKDTKEIVWEYPLEK-GWECNSVAATKAGEILF-SYSKGAKMITRDGRELWNIAAPA-----GCEMQTARIL 85 (276)
T ss_dssp TCSEEEEEETTTTEEEEEEECCT-TCCCCEEEECTTSCEEE-ECBSEEEEECTTSCEEEEEECCT-----TCEEEEEEEC
T ss_pred CCCEEEEEECCCCeEEEEeCCCc-cCCCcCeEECCCCCEEE-eCCCCEEEECCCCCEEEEEcCCC-----CccccccEEC
Confidence 6899999999 999999998765 13688999999999877 6788899999999974 333332 2357788888
Q ss_pred CCeEEEEecC---CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc---ccc
Q 003205 142 GNGVVCVTEA---NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---KVD 215 (839)
Q Consensus 142 ~~G~v~~t~~---~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~---~~~ 215 (839)
++|.++++.. ++++.++ .++...+.+.-......++.+ ......+++|+.++....++.|+.||.+|.. ...
T Consensus 86 ~dG~~lv~~~~~~~~v~~vd-~~Gk~l~~~~~~~~~~~~~~~-~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~ 163 (276)
T 3no2_A 86 PDGNALVAWCGHPSTILEVN-MKGEVLSKTEFETGIERPHAQ-FRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKL 163 (276)
T ss_dssp TTSCEEEEEESTTEEEEEEC-TTSCEEEEEEECCSCSSGGGS-CSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEEEC
T ss_pred CCCCEEEEecCCCCEEEEEe-CCCCEEEEEeccCCCCccccc-ccCceECCCCCEEEEecCCCEEEEECCCCCEEEEEEC
Confidence 9888888753 3566654 344444444311100111111 0011235589988887789999999999875 222
Q ss_pred CCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccC
Q 003205 216 DTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESC 256 (839)
Q Consensus 216 ~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~ 256 (839)
.++...+.+.|+|+.++..+.+++|..++.+-++.+.++..
T Consensus 164 ~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~ 204 (276)
T 3no2_A 164 SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA 204 (276)
T ss_dssp SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence 34556789999999998888888899998887777777754
No 159
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.81 E-value=4.7e-07 Score=96.05 Aligned_cols=205 Identities=12% Similarity=0.078 Sum_probs=131.6
Q ss_pred CEEEEcCCCC-eEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEe-CCeEEEE
Q 003205 36 NKVACAPFGG-PIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQ-DGTVYRY 113 (839)
Q Consensus 36 ~~va~sp~Gg-~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~-dGtv~l~ 113 (839)
..++++|+|+ .+++.. ..+.|..|+.+|. +..+..+. +.+.++.|++++.|+++.. ++.|.+|
T Consensus 31 eg~~~d~~g~~l~~~~~------------~~~~i~~~~~~~~-~~~~~~~~--~~~~~l~~~~dg~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 31 EGPVYVPARSAVIFSDV------------RQNRTWAWSDDGQ-LSPEMHPS--HHQNGHCLNKQGHLIACSHGLRRLERQ 95 (296)
T ss_dssp EEEEEEGGGTEEEEEEG------------GGTEEEEEETTSC-EEEEESSC--SSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred cCCeEeCCCCEEEEEeC------------CCCEEEEEECCCC-eEEEECCC--CCcceeeECCCCcEEEEecCCCeEEEE
Confidence 3788999998 444432 4678999999998 77777665 7899999999999866654 5889999
Q ss_pred eC-CCCccccCCCCCccccccCeEEEEEECCeEEEEec-------------------CCeEEEEecCCCceEEEcCCCCC
Q 003205 114 NI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTE-------------------ANRYFCMADFATMKVCELARPEV 173 (839)
Q Consensus 114 ~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~-------------------~~~~~~v~~~~~~~~~~l~~~~~ 173 (839)
+. .|++..+....... ....+.++.+.++|.+++|. .+.+|.++.- .....+.. ..
T Consensus 96 d~~~g~~~~~~~~~~~~-~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~-~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGK-KLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIR-DR 171 (296)
T ss_dssp CSTTCCEEEEECEETTE-ECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEEC-CC
T ss_pred cCCCCcEEEEeeccCCC-CCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeec-CC
Confidence 98 78874432211000 02235567888899888862 2356666532 22333322 11
Q ss_pred CCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecC--Ccc-----c--ccCCCceEEEECCCCcEEEEeecCCeEEEEe
Q 003205 174 EELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED--GVQ-----K--VDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (839)
Q Consensus 174 ~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~--~~~-----~--~~~~~i~~ia~Spng~~iA~~~~~g~i~i~s 244 (839)
..|... .+||+|+.++.-+.+++|++|+.+ |.. . ...+....|+++|+|++.+.. ++.|.+|+
T Consensus 172 -~~~~gi-----~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~ 243 (296)
T 3e5z_A 172 -VKPNGL-----AFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLT 243 (296)
T ss_dssp -SSEEEE-----EECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEEC
T ss_pred -CCCccE-----EECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEEC
Confidence 223322 356699887444457899999875 211 1 123345689999999866554 78899998
Q ss_pred cCCCCccccccCCCCCCCCceeeecC
Q 003205 245 TNFSSPVIDESCESALPPEQIAWCGM 270 (839)
Q Consensus 245 sd~~~~l~e~~~~~~~~p~~~~WcG~ 270 (839)
.+ ++.+..+.... . |..++|.+.
T Consensus 244 ~~-g~~~~~~~~~~-~-~~~~~f~~~ 266 (296)
T 3e5z_A 244 PD-GDELGRVLTPQ-T-TSNLCFGGP 266 (296)
T ss_dssp TT-SCEEEEEECSS-C-CCEEEEEST
T ss_pred CC-CCEEEEEECCC-C-ceeEEEECC
Confidence 87 66665565543 2 666766543
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.78 E-value=3.4e-07 Score=110.81 Aligned_cols=200 Identities=10% Similarity=0.027 Sum_probs=119.4
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCC
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIH 116 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~ 116 (839)
.+++||+|..||...+..+.... +..+.+.+|+..+..+..+..+. +.+....|||||+.+.-..|+.|++|+..
T Consensus 66 ~~~~Spdg~~l~~~~~~~~~~r~---~~~~~~~~~d~~~~~~~~l~~~~--~~~~~~~~SPdG~~la~~~~~~i~~~~~~ 140 (740)
T 4a5s_A 66 DYSISPDGQFILLEYNYVKQWRH---SYTASYDIYDLNKRQLITEERIP--NNTQWVTWSPVGHKLAYVWNNDIYVKIEP 140 (740)
T ss_dssp EEEECTTSSEEEEEEEEEECSSS---CEEEEEEEEETTTTEECCSSCCC--TTEEEEEECSSTTCEEEEETTEEEEESST
T ss_pred ceEECCCCCEEEEEECCeeeEEE---ccceEEEEEECCCCcEEEcccCC--CcceeeEECCCCCEEEEEECCeEEEEECC
Confidence 37889999999998754322211 12478899998887777776665 88999999999985444478899999875
Q ss_pred -CCccccCC-CCCccccccCe-----------------EEEEEECCeEEEEecC-----CeEEEE---------------
Q 003205 117 -AELIEPNA-SMGKECFEENV-----------------VECVFWGNGVVCVTEA-----NRYFCM--------------- 157 (839)
Q Consensus 117 -G~~~~~~~-g~~~~~~~~~V-----------------~~~~~~~~G~v~~t~~-----~~~~~v--------------- 157 (839)
|+..+... |+ ...+ ....++|||..++..+ -..|.+
T Consensus 141 ~~~~~~lt~~g~-----~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~ 215 (740)
T 4a5s_A 141 NLPSYRITWTGK-----EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVR 215 (740)
T ss_dssp TSCCEECCSCCB-----TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEE
T ss_pred CCceEEEcCCCC-----ccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCccee
Confidence 44433222 22 1112 2367788997555431 122222
Q ss_pred -----------------ecCCC---c---eEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeC----CeEEEEecCC
Q 003205 158 -----------------ADFAT---M---KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTD----AGILMLDEDG 210 (839)
Q Consensus 158 -----------------~~~~~---~---~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d----~tv~l~~~~~ 210 (839)
+++++ . ....+..+.. ...+...+..+.|||||+.++..... .+|++|+..+
T Consensus 216 ~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 216 VPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS-MLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp EECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH-HHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred ecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc-CCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 22222 1 1222211000 00022224455789999977766542 2789998653
Q ss_pred -c-----c-------cccCCCce-----EEEECCCCcEEE-Eee-cCC--eEEEEecCC
Q 003205 211 -V-----Q-------KVDDTLSQ-----KMAVSPNGNFVA-CFT-HDG--RLVVNNTNF 247 (839)
Q Consensus 211 -~-----~-------~~~~~~i~-----~ia~Spng~~iA-~~~-~~g--~i~i~ssd~ 247 (839)
. . ..+.+.+. ..+|||||+.++ ..+ .+| .|++++.+-
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~ 353 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 353 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence 2 1 12344443 789999999988 554 344 488887763
No 161
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=98.77 E-value=1e-06 Score=94.47 Aligned_cols=187 Identities=12% Similarity=0.105 Sum_probs=117.1
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCc-eeEEEecCCCCCeEEEeecCCCeEEEEEeCC----eE
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVL-ISETVWKNPGGRLIGMSWSEDQTLICVVQDG----TV 110 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~l-l~ti~~~~~~~~I~~~~fs~de~Lv~v~~dG----tv 110 (839)
.++++|+|..+++... .++.|.+|+. .|++ ..++..+. +...++.|+||++.+.+..++ +|
T Consensus 44 ~~~~s~dg~~l~~~~~-----------~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~i 110 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSD-----------FCQTLVQIETQLEPPKVVAIQEGQ--SSMADVDITPDDQFAVTVTGLNHPFNM 110 (331)
T ss_dssp EEEECSSSCEEEEEES-----------TTCEEEEEECSSSSCEEEEEEECS--SCCCCEEECTTSSEEEECCCSSSSCEE
T ss_pred eEEEcCCCCEEEEEeC-----------CCCeEEEEECCCCceeEEecccCC--CCccceEECCCCCEEEEecCCCCcccE
Confidence 7899999997777752 3679999997 5565 66666544 444449999999854455544 89
Q ss_pred EEEeCC-CCccccCCCCCccccccCeEEEEEECCeE-EEEec-C-CeEEEEecCCC-ce-----EEEcCCCCCCCCCceE
Q 003205 111 YRYNIH-AELIEPNASMGKECFEENVVECVFWGNGV-VCVTE-A-NRYFCMADFAT-MK-----VCELARPEVEELPHCV 180 (839)
Q Consensus 111 ~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G~-v~~t~-~-~~~~~v~~~~~-~~-----~~~l~~~~~~~~~~~w 180 (839)
++|++. |+.... +.. ......+.++++|. ++++. . +....+++++. .. ...+. .+..|.+.
T Consensus 111 ~v~d~~~~~~~~~-~~~-----~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~---~~~~~~~~ 181 (331)
T 3u4y_A 111 QSYSFLKNKFIST-IPI-----PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS---GGTRPFNI 181 (331)
T ss_dssp EEEETTTTEEEEE-EEC-----CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC---SSSSEEEE
T ss_pred EEEECCCCCeEEE-EEC-----CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc---CCCCccce
Confidence 999975 444332 222 23467889999985 44442 2 34123333321 11 11121 11233322
Q ss_pred EEeCCCCCCCCcEEEEEE-eCCeEEEEecCCcc-------cccCCCceEEEECCCCcEEEEeec-CCeEEEEecCCCCc
Q 003205 181 AVIEPKYTMTGSVEVLIG-TDAGILMLDEDGVQ-------KVDDTLSQKMAVSPNGNFVACFTH-DGRLVVNNTNFSSP 250 (839)
Q Consensus 181 ~vi~~~~S~~~~~~v~~s-~d~tv~l~~~~~~~-------~~~~~~i~~ia~Spng~~iA~~~~-~g~i~i~ssd~~~~ 250 (839)
.|||+|+.++..+ .+++|.+|+..... .........++|||||++++..+. ++.|++|+..-.+.
T Consensus 182 -----~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 182 -----TFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp -----EECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred -----EECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 3566998766665 48899999976322 123355689999999998776654 66799998764443
No 162
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.75 E-value=2.8e-07 Score=99.69 Aligned_cols=177 Identities=13% Similarity=0.157 Sum_probs=114.5
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeC------
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQD------ 107 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~d------ 107 (839)
...+++||+|..||..+++. ......|.+|+..|.....+.-.. + +..+.|||||+ |+.++.+
T Consensus 61 ~~~~~~SpDg~~la~~~~~~-------~~~~~~l~~~~~~~g~~~~l~~~~--~-~~~~~wspdg~~l~~~~~~~~~~~~ 130 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANE-------EKKVSEIWVADLETLSSKKILEAK--N-IRSLEWNEDSRKLLIVGFKRREDED 130 (347)
T ss_dssp CEEEEECTTSSEEEEEEEET-------TTTEEEEEEEETTTTEEEEEEEES--E-EEEEEECTTSSEEEEEEECCCC---
T ss_pred CCCeEECCCCCEEEEEEecc-------CCCcceEEEEECCCCceEEEEcCC--C-ccceeECCCCCEEEEEEccCCCcCC
Confidence 34689999999999987421 012345888887776655555555 5 89999999997 5555532
Q ss_pred ---------------------CeEEEEeCCC-CccccCCCCCccccccCeEEEEEECCeEEEEec-----------CCeE
Q 003205 108 ---------------------GTVYRYNIHA-ELIEPNASMGKECFEENVVECVFWGNGVVCVTE-----------ANRY 154 (839)
Q Consensus 108 ---------------------Gtv~l~~~~G-~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~-----------~~~~ 154 (839)
+.+++|++.+ +..+.... . .+..+.++++| ++++. ..++
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~------~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l 202 (347)
T 2gop_A 131 FIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK------P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDI 202 (347)
T ss_dssp ------CCCC---------CEEEEEEEETTTTEEEEEEEE------E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEE
T ss_pred cEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC------C-CcccccCCCCe-EEEEEecccccccccccccE
Confidence 4677788754 33121110 1 45677889999 55544 1246
Q ss_pred EEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeC--------CeEEEEecCCcc----cccCCCceE-
Q 003205 155 FCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTD--------AGILMLDEDGVQ----KVDDTLSQK- 221 (839)
Q Consensus 155 ~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d--------~tv~l~~~~~~~----~~~~~~i~~- 221 (839)
|.++ +.....+.. . .. +..+ ||||+.+++++.+ ..|++|+ ++.. ..+...+..
T Consensus 203 ~~~d---~~~~~~l~~----~-~~---~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~~~~~ 268 (347)
T 2gop_A 203 YIWE---DGKEEKMFE----K-VS---FYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVDRGVGQA 268 (347)
T ss_dssp EEEE---TTEEEEEEE----E-ES---EEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESSTTCCSEEEEE
T ss_pred EEeC---CCceEEecc----C-cc---eeeE--CCCCCEEEEEEccccCCccccceEEEEC-CCceEeccccCCcccCCc
Confidence 6665 334444432 1 11 1122 7799999888854 4799999 5543 233456776
Q ss_pred EEECCCCcEEEEeecCCeEEEEecC
Q 003205 222 MAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 222 ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
+++| || ++++.+.+|+..|| .+
T Consensus 269 ~~~s-dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 269 KIKD-GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp EEET-TE-EEEEEEETTEEEEE-EE
T ss_pred cEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence 9999 99 88998999987777 55
No 163
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.74 E-value=1.4e-07 Score=112.04 Aligned_cols=180 Identities=13% Similarity=0.128 Sum_probs=113.9
Q ss_pred cCCCCe-EEEEecCchhhhhhcccCCceEEEEcCC--C-CceeEEEe-----cCCCCCeEEEeecCCCe-EEEEEeC---
Q 003205 41 APFGGP-IAVIRDDSKIVQLYAESALRKLRIFNSA--G-VLISETVW-----KNPGGRLIGMSWSEDQT-LICVVQD--- 107 (839)
Q Consensus 41 sp~Gg~-IA~~~d~~k~~~~~~~~~~~~I~iy~~~--G-~ll~ti~~-----~~~~~~I~~~~fs~de~-Lv~v~~d--- 107 (839)
||+|+. ||...+ .+..|.+++.. | .....+.. +. ..+.++.|||||+ |++++.|
T Consensus 87 SPDg~~~la~~~~-----------~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~--~~~~~~~~spDg~~l~~~~~~~~~ 153 (662)
T 3azo_A 87 RPAGGPLLVFTHF-----------GDQRLYAFEPDAPGGAVPRPLTPVSAVGGG--LRWADPVLLPERGEVWCMAEEFTG 153 (662)
T ss_dssp CSSSSCEEEEEBT-----------TTCCEEEECTTSTTCCCCEECSCCCCSTTC--EEEEEEEEETTTTEEEEEEEEECS
T ss_pred ecCCCeEEEEEEC-----------CCCeEEEEcCCCCCCCCCEeccCCccCCCC--ccccCcEECCCCCEEEEEEecccC
Confidence 499999 998764 25678888887 4 55555555 33 6789999999997 5677776
Q ss_pred -------CeEEEEeCCC------CccccCC-CCCccccccCeEEEEEECCeEEEEec--CC--------eEEEEecCC-C
Q 003205 108 -------GTVYRYNIHA------ELIEPNA-SMGKECFEENVVECVFWGNGVVCVTE--AN--------RYFCMADFA-T 162 (839)
Q Consensus 108 -------Gtv~l~~~~G------~~~~~~~-g~~~~~~~~~V~~~~~~~~G~v~~t~--~~--------~~~~v~~~~-~ 162 (839)
.+|++|++.| ...+... .+ ...+..+.++++|..++.. +. .+| +.+++ +
T Consensus 154 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~-~~d~~~~ 227 (662)
T 3azo_A 154 EGPSDVRRFLAAVPLDGSAAADRSAVRELSDDA-----HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELK-TARVTED 227 (662)
T ss_dssp SSTTCEEEEEEEEETTSTTTTCGGGSEESSCSC-----SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEE-EEEECTT
T ss_pred CCCCCceeEEEEEECCCCccccCCceeEEEecC-----CCcccCceECCCCCEEEEEECCCCCCCCCCcEEE-EEEECCC
Confidence 5789999876 3322232 33 3346677899999655432 22 344 44454 2
Q ss_pred c---eEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCC--eEEEEecCCcc-----cccCC---C-----ceEEEE
Q 003205 163 M---KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDA--GILMLDEDGVQ-----KVDDT---L-----SQKMAV 224 (839)
Q Consensus 163 ~---~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~--tv~l~~~~~~~-----~~~~~---~-----i~~ia~ 224 (839)
. ....+.. .. . ..+..+.|||||+..+..+.++ .|++|+..+.. ..+.. | +..++|
T Consensus 228 g~~~~~~~l~~----~~-~-~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~ 301 (662)
T 3azo_A 228 GRFADTRTLLG----GP-E-EAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAP 301 (662)
T ss_dssp SCEEEEEEEEE----ET-T-BCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEE
T ss_pred CcccccEEeCC----CC-C-ceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeE
Confidence 3 3444432 10 1 1234457888999444444466 78888874332 11111 1 468999
Q ss_pred CCCCcEEEEeecCCeEEEEecC
Q 003205 225 SPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 225 Spng~~iA~~~~~g~i~i~ssd 246 (839)
||+|+++++.+. |+..||..|
T Consensus 302 ~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 302 LANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp CTTSCEEEEEBS-SSCEEEEEE
T ss_pred eCCCEEEEEEEc-CccEEEEEE
Confidence 999999999988 886666444
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.73 E-value=9.6e-07 Score=92.94 Aligned_cols=169 Identities=12% Similarity=0.168 Sum_probs=114.1
Q ss_pred CceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEE-EeCCeEEEEeCCCCccccCC--CCCccccccCeEEEEEE
Q 003205 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICV-VQDGTVYRYNIHAELIEPNA--SMGKECFEENVVECVFW 141 (839)
Q Consensus 65 ~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v-~~dGtv~l~~~~G~~~~~~~--g~~~~~~~~~V~~~~~~ 141 (839)
++.|.+|+.+|+.+.++.... ...+.++.+++++.++++ ..++.|++|+..|+...... ++ ...+..+.+.
T Consensus 99 ~~~i~~~d~~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~-----~~~p~~i~~~ 172 (286)
T 1q7f_A 99 THQIQIYNQYGQFVRKFGATI-LQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKH-----LEFPNGVVVN 172 (286)
T ss_dssp GCEEEEECTTSCEEEEECTTT-CSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTT-----CSSEEEEEEC
T ss_pred CCEEEEECCCCcEEEEecCcc-CCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCc-----cCCcEEEEEC
Confidence 578999999999998875433 257899999999997655 45789999999888744321 12 2346788888
Q ss_pred CCeEEEEec--CCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCC-eEEEEecCCcc----cc
Q 003205 142 GNGVVCVTE--ANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDA-GILMLDEDGVQ----KV 214 (839)
Q Consensus 142 ~~G~v~~t~--~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~-tv~l~~~~~~~----~~ 214 (839)
++|.++++. ++.++.++ .++.....+...+....|... .++++|.+.|....++ +|.+|+.++.. ..
T Consensus 173 ~~g~l~v~~~~~~~i~~~~-~~g~~~~~~~~~g~~~~p~~i-----~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~ 246 (286)
T 1q7f_A 173 DKQEIFISDNRAHCVKVFN-YEGQYLRQIGGEGITNYPIGV-----GINSNGEILIADNHNNFNLTIFTQDGQLISALES 246 (286)
T ss_dssp SSSEEEEEEGGGTEEEEEE-TTCCEEEEESCTTTSCSEEEE-----EECTTCCEEEEECSSSCEEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEECCCCEEEEEc-CCCCEEEEEccCCccCCCcEE-----EECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcc
Confidence 888887775 34555554 444444455431110223332 2344887666555565 99999988764 11
Q ss_pred --cCCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 215 --DDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 215 --~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
.......|+++|+|+++++ +.+++|.+|...
T Consensus 247 ~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~ 279 (286)
T 1q7f_A 247 KVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV 279 (286)
T ss_dssp SSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred cCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence 2223678999999987777 678999999643
No 165
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=98.73 E-value=1.4e-06 Score=95.15 Aligned_cols=192 Identities=9% Similarity=0.117 Sum_probs=112.9
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC---CC--ceeEEEecCCCCCeEEEeecCCCe-EEEEE-eCC
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA---GV--LISETVWKNPGGRLIGMSWSEDQT-LICVV-QDG 108 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~---G~--ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~-~dG 108 (839)
..++++|+|..|++.... +...+.|.+|+.+ |+ .+.++..+. .....+.| +++ |+++. .+|
T Consensus 53 ~~l~~spdg~~l~~~~~~--------~~~~~~v~~~~~~~~~g~~~~~~~~~~~~--~~p~~~~~--dg~~l~~~~~~~~ 120 (361)
T 3scy_A 53 SYLIPSADGKFVYSVNEF--------SKDQAAVSAFAFDKEKGTLHLLNTQKTMG--ADPCYLTT--NGKNIVTANYSGG 120 (361)
T ss_dssp CSEEECTTSSEEEEEECC--------SSTTCEEEEEEEETTTTEEEEEEEEECSS--SCEEEEEE--CSSEEEEEETTTT
T ss_pred ceEEECCCCCEEEEEEcc--------CCCCCcEEEEEEeCCCCcEEEeeEeccCC--CCcEEEEE--CCCEEEEEECCCC
Confidence 457999999999888631 0134789999754 43 344555444 67888888 555 55554 588
Q ss_pred eEEEEeCC--CCccccC-----CCCCcc---ccccCeEEEEEECCeE-EEEecC--CeEEEEecCCCce-------E---
Q 003205 109 TVYRYNIH--AELIEPN-----ASMGKE---CFEENVVECVFWGNGV-VCVTEA--NRYFCMADFATMK-------V--- 165 (839)
Q Consensus 109 tv~l~~~~--G~~~~~~-----~g~~~~---~~~~~V~~~~~~~~G~-v~~t~~--~~~~~v~~~~~~~-------~--- 165 (839)
+|.+|++. |.+.... .+.... .....+..+.|+++|. ++++.. +.++ +++++... +
T Consensus 121 ~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~-v~~~~~~~~~~~~~~l~~~ 199 (361)
T 3scy_A 121 SITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIH-KFNINPNANADNKEKFLTK 199 (361)
T ss_dssp EEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEE-EEEECTTCCTTTCCCCEEE
T ss_pred EEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEE-EEEEcCCCCcccccceeec
Confidence 99999864 4332211 111000 0022357789999995 444442 3333 33332111 1
Q ss_pred ---EEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEE-eCCeEEEEecCCcc----------cccCCCceEEEECCCCcEE
Q 003205 166 ---CELARPEVEELPHCVAVIEPKYTMTGSVEVLIG-TDAGILMLDEDGVQ----------KVDDTLSQKMAVSPNGNFV 231 (839)
Q Consensus 166 ---~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s-~d~tv~l~~~~~~~----------~~~~~~i~~ia~Spng~~i 231 (839)
..+.. +.+..|.+ ..|||||+.++..+ .+++|.+|+.++.. ..+......|+|||||++|
T Consensus 200 ~~~~~~~~-~~~~~~~~-----~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l 273 (361)
T 3scy_A 200 GTPEAFKV-APGSGPRH-----LIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYL 273 (361)
T ss_dssp EEEEEEEC-CTTCCEEE-----EEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEE
T ss_pred ccccceec-CCCCCCeE-----EEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEE
Confidence 11111 11122332 24677999887777 48999999876321 1112335799999999998
Q ss_pred EEeecC--CeEEEEecC
Q 003205 232 ACFTHD--GRLVVNNTN 246 (839)
Q Consensus 232 A~~~~~--g~i~i~ssd 246 (839)
+..+.. +++.+|+.+
T Consensus 274 ~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 274 YASNRLKADGVAIFKVD 290 (361)
T ss_dssp EEEECSSSCEEEEEEEC
T ss_pred EEECCCCCCEEEEEEEc
Confidence 776654 789998765
No 166
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=98.71 E-value=5.2e-08 Score=104.29 Aligned_cols=206 Identities=10% Similarity=-0.002 Sum_probs=120.6
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC-CCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYR 112 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l 112 (839)
....++++|+|..+++...............++.|.+|+.. |+.+..+.. . ..+.++.|+||+..+.+. ++.+++
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~--~~~~~~~~s~dg~~l~~~-~~~i~~ 158 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-P--RQITMLAWARDGSKLYGL-GRDLHV 158 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-C--SSCCCEEECTTSSCEEEE-SSSEEE
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-C--CCcceeEECCCCCEEEEe-CCeEEE
Confidence 34578999999999888521000000000036899999975 566777764 3 567888999999854444 789999
Q ss_pred EeCC-CCccc-cCCCCCccccccCeEEEEEECCeEEEEecC---CeE----------------------EEEecCCCceE
Q 003205 113 YNIH-AELIE-PNASMGKECFEENVVECVFWGNGVVCVTEA---NRY----------------------FCMADFATMKV 165 (839)
Q Consensus 113 ~~~~-G~~~~-~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~---~~~----------------------~~v~~~~~~~~ 165 (839)
|++. |+... +..+.. ...+ .+.++|..+.... +.+ ..+.+..+...
T Consensus 159 ~d~~~~~~~~~~~~~~~----~~~~---~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 231 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSW----EAET---YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM 231 (337)
T ss_dssp EETTTTEEEEEECSTTT----TTTT---BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred EECCCCcEeeeeecccc----CCCc---eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence 9975 44432 222210 0111 3455554332221 111 12333333222
Q ss_pred EEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----cccCCCceEEEECCCCcEEEEeecCCeEE
Q 003205 166 CELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLV 241 (839)
Q Consensus 166 ~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----~~~~~~i~~ia~Spng~~iA~~~~~g~i~ 241 (839)
..+...+....+. . ..|||||+.++.. +++|++|+..+.. ......+..++|||+|+++++.+.+++|.
T Consensus 232 ~~~~~~~~~~~~~--~---~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~ 304 (337)
T 1pby_B 232 AMREVRIMDVFYF--S---TAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLA 304 (337)
T ss_dssp EEEEEEECSSCEE--E---EEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEE
T ss_pred eEeecCCCCCcee--e---EEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEE
Confidence 2211100001111 1 2466799887666 7999999987543 12234578999999999998888899999
Q ss_pred EEecCCCCccccccCC
Q 003205 242 VNNTNFSSPVIDESCE 257 (839)
Q Consensus 242 i~ssd~~~~l~e~~~~ 257 (839)
+|+.+-.+.+.++...
T Consensus 305 v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 305 AYDAETLEKKGQVDLP 320 (337)
T ss_dssp EEETTTCCEEEEEECG
T ss_pred EEECcCCcEEEEEEcC
Confidence 9997756666555544
No 167
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=98.68 E-value=1.4e-07 Score=106.84 Aligned_cols=193 Identities=15% Similarity=0.147 Sum_probs=121.3
Q ss_pred ceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeEEEEeCCCC------------cccc----CCCCCc
Q 003205 66 RKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNIHAE------------LIEP----NASMGK 128 (839)
Q Consensus 66 ~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv~l~~~~G~------------~~~~----~~g~~~ 128 (839)
+.+++|+..+.+ .. ..+..++|++++.+ +++..|| +++|+...- ...+ .+++
T Consensus 23 ~~vri~~~~~~~------~~--~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 91 (434)
T 2oit_A 23 KKVRIFDSPEEL------PK--ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPM-- 91 (434)
T ss_dssp CEEECSCCCSSC------CC--SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECC--
T ss_pred eeEEecCCcccc------CC--CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccC--
Confidence 468888765441 22 45677788887765 5666676 888853210 0000 0111
Q ss_pred cccccCeEEEEEECCeEEEE----ecCCe-EEEEecCCCc-----eE----EEcCCCCCCCCCceEEEeCCCCCCC-CcE
Q 003205 129 ECFEENVVECVFWGNGVVCV----TEANR-YFCMADFATM-----KV----CELARPEVEELPHCVAVIEPKYTMT-GSV 193 (839)
Q Consensus 129 ~~~~~~V~~~~~~~~G~v~~----t~~~~-~~~v~~~~~~-----~~----~~l~~~~~~~~~~~w~vi~~~~S~~-~~~ 193 (839)
...|..+.|+++|..++ +++.+ ...+|++... .. ..+.. ..++....+++ .|+|+ +..
T Consensus 92 ---~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~v---~~~p~~~~~ 164 (434)
T 2oit_A 92 ---KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKL-LKDAGGMVIDM---KWNPTVPSM 164 (434)
T ss_dssp ---SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEEC-CCSGGGSEEEE---EECSSCTTE
T ss_pred ---CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeec-cCCCCCceEEE---EECCCCCCE
Confidence 34589999999998887 66543 4556654322 00 01111 00012223333 56667 788
Q ss_pred EEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCC------CCC
Q 003205 194 EVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESA------LPP 262 (839)
Q Consensus 194 ~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~------~~p 262 (839)
++.++.|++|++||..... ..+..++..+++||+|++||+++.||+|.+|+.+ .+...++..+.. ...
T Consensus 165 las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v 243 (434)
T 2oit_A 165 VAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRV 243 (434)
T ss_dssp EEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEE
T ss_pred EEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeE
Confidence 9999999999999987543 3456789999999999999999999999999876 343333332211 145
Q ss_pred CceeeecCceEEEEe
Q 003205 263 EQIAWCGMDSVLLYW 277 (839)
Q Consensus 263 ~~~~WcG~d~vv~~~ 277 (839)
..+.|.++...++.+
T Consensus 244 ~~v~w~~~~~~l~~~ 258 (434)
T 2oit_A 244 LDVLWIGTYVFAIVY 258 (434)
T ss_dssp EEEEEEETTEEEEEE
T ss_pred EEEEEecCceEEEEE
Confidence 688998877666544
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=98.68 E-value=1.2e-06 Score=96.32 Aligned_cols=187 Identities=11% Similarity=0.067 Sum_probs=114.6
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC--CCCceeEEEecCCCCCeEEEeecCCCe--EE-EE-----
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS--AGVLISETVWKNPGGRLIGMSWSEDQT--LI-CV----- 104 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~--~G~ll~ti~~~~~~~~I~~~~fs~de~--Lv-~v----- 104 (839)
...++++|+|..+++.. .+ .|.+|+. +|++........ .+.+..+.|+||++ ++ ++
T Consensus 42 ~~~~a~spdg~~l~~~~------------~~-~v~~~~~~~~g~~~~~~~~~~-~g~~~~~~~spdg~~l~~~~~~~~~~ 107 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAA------------MK-KWSSFAVKSPTEIVHEASHPI-GGHPRANDADTNTRAIFLLAAKQPPY 107 (365)
T ss_dssp CSEEEECTTSSEEEEEE------------BT-EEEEEEEEETTEEEEEEEEEC-CSSGGGGCTTSCCEEEEEEECSSTTC
T ss_pred CcEEEECCCCCEEEEEc------------cc-eEEEEEECCCCCEEEeeEeec-CCCCccEEECCCCCEEEEEEecCCcc
Confidence 45799999999888775 23 8999995 687765443322 14466789999998 33 33
Q ss_pred ---E-----eCCeEEEEeC--CCCccccCC----CCCccccccCeEEEEEECCeEEEEec---CCeEEEEecCC-CceEE
Q 003205 105 ---V-----QDGTVYRYNI--HAELIEPNA----SMGKECFEENVVECVFWGNGVVCVTE---ANRYFCMADFA-TMKVC 166 (839)
Q Consensus 105 ---~-----~dGtv~l~~~--~G~~~~~~~----g~~~~~~~~~V~~~~~~~~G~v~~t~---~~~~~~v~~~~-~~~~~ 166 (839)
. .+|++.+|++ .|++..... .+ ...+..+.++++|..+++. ++.++ +++++ +....
T Consensus 108 ~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~~spdG~~l~~~~~~~~~v~-~~~~~~~g~~~ 181 (365)
T 1jof_A 108 AVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQE-----NTGIHGMVFDPTETYLYSADLTANKLW-THRKLASGEVE 181 (365)
T ss_dssp CEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCT-----TCCEEEEEECTTSSEEEEEETTTTEEE-EEEECTTSCEE
T ss_pred eeccceeecCCceEEEEccCCCCcCcceEeeEEeCC-----CCcceEEEECCCCCEEEEEcCCCCEEE-EEEECCCCCEE
Confidence 1 5899999976 466532111 12 3457889999999644443 23443 44443 23322
Q ss_pred EcCCCCC---CCCCceEEEeCCCCCCCCcEEEEEEe-CCeEEEEecC---Ccc--------ccc------CC------Cc
Q 003205 167 ELARPEV---EELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDED---GVQ--------KVD------DT------LS 219 (839)
Q Consensus 167 ~l~~~~~---~~~~~~w~vi~~~~S~~~~~~v~~s~-d~tv~l~~~~---~~~--------~~~------~~------~i 219 (839)
.+..... +..|.+. .|||||+.++.++. +++|.+|+.+ |.. ... .+ ..
T Consensus 182 ~~~~~~~~~~g~~p~~~-----~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 256 (365)
T 1jof_A 182 LVGSVDAPDPGDHPRWV-----AMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYR 256 (365)
T ss_dssp EEEEEECSSTTCCEEEE-----EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEE
T ss_pred EeeeEecCCCCCCCCEe-----EECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccccc
Confidence 2211000 1223322 46679998877765 6888888643 321 111 11 36
Q ss_pred eEEE-ECCCCcEEEEeecCC------eEEEEecC
Q 003205 220 QKMA-VSPNGNFVACFTHDG------RLVVNNTN 246 (839)
Q Consensus 220 ~~ia-~Spng~~iA~~~~~g------~i~i~ssd 246 (839)
..++ |||||++|+..+..+ +|.+|+.+
T Consensus 257 ~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 257 ADVCALTFSGKYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp EEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred ccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence 7899 999999987766432 78888754
No 169
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.67 E-value=6e-06 Score=85.68 Aligned_cols=190 Identities=15% Similarity=0.076 Sum_probs=117.7
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRY 113 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~ 113 (839)
.-..++++|+|...++.. ...+.|.+|+..+.....+.... ...+.++.|++++.+.++..++.|.+|
T Consensus 25 ~p~~i~~~~~g~l~v~~~-----------~~~~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~~~~g~l~v~~~~~~i~~~ 92 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSE-----------GMYGRVVKLATGSTGTTVLPFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTL 92 (270)
T ss_dssp CEEEEEECTTCCEEEEEC-----------SSSCEEEEECC-----EECCCCS-CCSCCCEEECTTCCEEEEETTTEEEEE
T ss_pred CccceEECCCCCEEEEcc-----------CCCCcEEEecCCCcccceEeeCC-cCCcceeEECCCCCEEEEcCCCEEEEE
Confidence 445788899988554232 14688999998776655443322 256889999999998766668899999
Q ss_pred eCCCCccccCCCCCccccccCeEEEEEECCeEEEEec--CCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCC
Q 003205 114 NIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTE--ANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTG 191 (839)
Q Consensus 114 ~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~--~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~ 191 (839)
+..|.......... ...+..+.+.++|.++++. ++.++.+.. .+........... ..|.+.++ +++|
T Consensus 93 d~~~~~~~~~~~~~----~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~~~~~~~~~~~~~-~~p~~i~~-----~~~g 161 (270)
T 1rwi_B 93 AAGSNNQTVLPFDG----LNYPEGLAVDTQGAVYVADRGNNRVVKLAA-GSKTQTVLPFTGL-NDPDGVAV-----DNSG 161 (270)
T ss_dssp CTTCSCCEECCCCS----CSSEEEEEECTTCCEEEEEGGGTEEEEECT-TCCSCEECCCCSC-CSCCCEEE-----CTTC
T ss_pred eCCCceEeeeecCC----cCCCcceEECCCCCEEEEECCCCEEEEEEC-CCceeEeeccccC-CCceeEEE-----eCCC
Confidence 98887643222111 2457778888888777764 456766642 2222222111111 23444433 3378
Q ss_pred cEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 192 SVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 192 ~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
.+.+.-..++.|+.|+.++.. .........|+++|+|...+.-..++.|.+++.+
T Consensus 162 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~ 221 (270)
T 1rwi_B 162 NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG 221 (270)
T ss_dssp CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred CEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence 744443447899999988754 1222557899999999776666667889888765
No 170
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=98.64 E-value=1.6e-07 Score=106.35 Aligned_cols=184 Identities=8% Similarity=-0.025 Sum_probs=117.3
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCC------------C-----ceeEEEecCCCCCeEEEeec
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG------------V-----LISETVWKNPGGRLIGMSWS 96 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G------------~-----ll~ti~~~~~~~~I~~~~fs 96 (839)
....+|++|.+|.+|+... ++ |+||+... . ...++. +. +.|.++.|+
T Consensus 38 ~~n~lavs~~~~~l~~~~~------------dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~v~~l~~s 101 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGA------------SG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVP-MK--FPIHHLALS 101 (434)
T ss_dssp CCBCEEEETTTTEEEEEET------------TE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEEC-CS--SCEEEEEEC
T ss_pred CccEEEEecCCCEEEEECC------------CE-EEEEEchHhhhhcccccCcccccccCcccccc-CC--CcccEEEEc
Confidence 4568999999999999863 23 66654321 0 011121 22 679999999
Q ss_pred CCCeE-E----EEEeCCeEEEEeCCCC------c------cccCCCCCccccccCeEEEEEECC-eEEEEec--CCeEEE
Q 003205 97 EDQTL-I----CVVQDGTVYRYNIHAE------L------IEPNASMGKECFEENVVECVFWGN-GVVCVTE--ANRYFC 156 (839)
Q Consensus 97 ~de~L-v----~v~~dGtv~l~~~~G~------~------~~~~~g~~~~~~~~~V~~~~~~~~-G~v~~t~--~~~~~~ 156 (839)
|++.+ + +++.||+|++|++... . .....+| ...|.++.++++ |..+++. ++.+ .
T Consensus 102 pdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h-----~~~V~~v~~~p~~~~~las~s~Dg~v-~ 175 (434)
T 2oit_A 102 CDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDA-----GGMVIDMKWNPTVPSMVAVCLADGSI-A 175 (434)
T ss_dssp TTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSG-----GGSEEEEEECSSCTTEEEEEETTSCE-E
T ss_pred CCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCC-----CCceEEEEECCCCCCEEEEEECCCeE-E
Confidence 99985 4 3456999999985321 1 2334456 667999999986 6556554 4444 4
Q ss_pred EecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----cc-------cCCCceEEEEC
Q 003205 157 MADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KV-------DDTLSQKMAVS 225 (839)
Q Consensus 157 v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----~~-------~~~~i~~ia~S 225 (839)
+|++...... ... .++....+++ .|||+|+.++..+.|++|++|+..+.. .. +...+..++++
T Consensus 176 iwD~~~~~~~-~~~--~~~~~~v~~v---~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~ 249 (434)
T 2oit_A 176 VLQVTETVKV-CAT--LPSTVAVTSV---CWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWI 249 (434)
T ss_dssp EEEESSSEEE-EEE--ECGGGCEEEE---EECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred EEEcCCCcce-eec--cCCCCceeEE---EEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEe
Confidence 5555543221 111 0111222333 567799999999999999999988432 11 12378999999
Q ss_pred CCCcEEEEeec-CCe------EEEEec
Q 003205 226 PNGNFVACFTH-DGR------LVVNNT 245 (839)
Q Consensus 226 png~~iA~~~~-~g~------i~i~ss 245 (839)
|++.+++.++. +|. +.+|..
T Consensus 250 ~~~~~l~~~~~~dg~~~~~~~v~i~~l 276 (434)
T 2oit_A 250 GTYVFAIVYAAADGTLETSPDVVMALL 276 (434)
T ss_dssp ETTEEEEEEEETTCCSSSCCEEEEEEC
T ss_pred cCceEEEEEccCCCccCCCCceEEEEe
Confidence 99999877653 332 666653
No 171
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=98.60 E-value=2.7e-06 Score=92.79 Aligned_cols=174 Identities=14% Similarity=0.197 Sum_probs=101.1
Q ss_pred CCceEEEEcCC--CCc--e-eEEEecCC--------CCCeEEEeecCCCe-EEEEE-eCCeEEEEeCC--C-----C-cc
Q 003205 64 ALRKLRIFNSA--GVL--I-SETVWKNP--------GGRLIGMSWSEDQT-LICVV-QDGTVYRYNIH--A-----E-LI 120 (839)
Q Consensus 64 ~~~~I~iy~~~--G~l--l-~ti~~~~~--------~~~I~~~~fs~de~-Lv~v~-~dGtv~l~~~~--G-----~-~~ 120 (839)
.++.|.+|+.+ |.+ + ..+..... ...+.++.|+||++ +++.. .+++|++|++. + + +.
T Consensus 118 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~ 197 (361)
T 3scy_A 118 SGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFL 197 (361)
T ss_dssp TTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCE
T ss_pred CCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccccccee
Confidence 47889999854 332 1 11222110 12458899999998 44443 47899999754 2 2 21
Q ss_pred ------ccCCCCCccccccCeEEEEEECCeE-EEEec--CCeEEEEecCCCceEEE---cCCCCCCCCCceEEEeCCCCC
Q 003205 121 ------EPNASMGKECFEENVVECVFWGNGV-VCVTE--ANRYFCMADFATMKVCE---LARPEVEELPHCVAVIEPKYT 188 (839)
Q Consensus 121 ------~~~~g~~~~~~~~~V~~~~~~~~G~-v~~t~--~~~~~~v~~~~~~~~~~---l~~~~~~~~~~~w~vi~~~~S 188 (839)
...... ...+..+.|+++|. ++++. ++.+ .++++.+..... +...+. .......+ .||
T Consensus 198 ~~~~~~~~~~~~-----~~~~~~~~~spdg~~l~v~~~~~~~v-~v~~~~~g~~~~~~~~~~~~~-~~~~~~~i---~~s 267 (361)
T 3scy_A 198 TKGTPEAFKVAP-----GSGPRHLIFNSDGKFAYLINEIGGTV-IAFRYADGMLDEIQTVAADTV-NAQGSGDI---HLS 267 (361)
T ss_dssp EEEEEEEEECCT-----TCCEEEEEECTTSSEEEEEETTTCEE-EEEEEETTEEEEEEEEESCSS-CCCCEEEE---EEC
T ss_pred ecccccceecCC-----CCCCeEEEEcCCCCEEEEEcCCCCeE-EEEEecCCceEEeEEEecCCC-CCCCcccE---EEC
Confidence 112222 34567889999985 43443 3343 344443333222 221111 11111222 467
Q ss_pred CCCcEEEEEEeC--CeEEEEecC---Ccc----c-ccCCCceEEEECCCCcEEEEee-cCCeEEEEecCC
Q 003205 189 MTGSVEVLIGTD--AGILMLDED---GVQ----K-VDDTLSQKMAVSPNGNFVACFT-HDGRLVVNNTNF 247 (839)
Q Consensus 189 ~~~~~~v~~s~d--~tv~l~~~~---~~~----~-~~~~~i~~ia~Spng~~iA~~~-~~g~i~i~ssd~ 247 (839)
|||+.++....+ ++|.+|+.+ +.. . ........++|||||++|+..+ .++++.+|..|.
T Consensus 268 pdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 268 PDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp TTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 799987666654 789999875 331 1 1234578999999999998887 568898876664
No 172
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.57 E-value=5.1e-05 Score=79.41 Aligned_cols=229 Identities=12% Similarity=0.074 Sum_probs=136.8
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEe-CCeEEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQ-DGTVYR 112 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~-dGtv~l 112 (839)
....+++.|+|....... ..+.|..|+..|+ +..+........+.++.+++++.+.++.. +|.|..
T Consensus 16 ~~~~i~~d~~g~l~v~~~------------~~~~v~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 82 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQH------------KANMISCINLDGK-ITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGR 82 (299)
T ss_dssp CEEEEEECTTSCEEEEET------------TTTEEEEECTTCC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred CccceEECCCCCEEEEec------------CCCcEEEEcCCCC-eEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEE
Confidence 345788889988665542 3578999998855 44444332126799999999999876665 788999
Q ss_pred EeCCCCccccCCCCCccccccCeEEEEEECCeEEEEec--CCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCC
Q 003205 113 YNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTE--ANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMT 190 (839)
Q Consensus 113 ~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~--~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~ 190 (839)
|+..|++..+..+.. ...+..+.+.++|.++++. ++.++.++. .+ ....+..+.....|.+.+ + +++
T Consensus 83 ~~~~g~~~~~~~~~~----~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g-~~~~~~~~~~~~~~~~i~-~----~~~ 151 (299)
T 2z2n_A 83 ITKKGIIKEYTLPNP----DSAPYGITEGPNGDIWFTEMNGNRIGRITD-DG-KIREYELPNKGSYPSFIT-L----GSD 151 (299)
T ss_dssp ECTTSCEEEEECSST----TCCEEEEEECTTSCEEEEETTTTEEEEECT-TC-CEEEEECSSTTCCEEEEE-E----CTT
T ss_pred ECCCCcEEEEeCCCc----CCCceeeEECCCCCEEEEecCCceEEEECC-CC-CEEEecCCCCCCCCceEE-E----cCC
Confidence 998888755443311 3457777888888777765 345666654 32 222322111112344332 2 337
Q ss_pred CcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCC-CCCCCCc
Q 003205 191 GSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCE-SALPPEQ 264 (839)
Q Consensus 191 ~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~-~~~~p~~ 264 (839)
|.+.+....++.|+.++.++.. ......+..|+++|+|++.+....++.|.+++.+ ++ +..+... ....|..
T Consensus 152 g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~ 229 (299)
T 2z2n_A 152 NALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTS-GE-ITEFKIPTPNARPHA 229 (299)
T ss_dssp SCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CC-EEEEECSSTTCCEEE
T ss_pred CCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCC-Cc-EEEEECCCCCCCcee
Confidence 7655544446889999986543 1223457799999999876665557789998763 22 3333222 1234555
Q ss_pred eeeecCceEEEE--ecCEEEEEcCCC
Q 003205 265 IAWCGMDSVLLY--WNDMLVMVAPQA 288 (839)
Q Consensus 265 ~~WcG~d~vv~~--~~~~l~lig~~~ 288 (839)
+....+..+.+. .++.|..+.+.+
T Consensus 230 i~~~~~g~l~v~~~~~~~i~~~d~~g 255 (299)
T 2z2n_A 230 ITAGAGIDLWFTEWGANKIGRLTSNN 255 (299)
T ss_dssp EEECSTTCEEEEETTTTEEEEEETTT
T ss_pred EEECCCCCEEEeccCCceEEEECCCC
Confidence 555443333222 123555555543
No 173
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.56 E-value=6.8e-07 Score=98.21 Aligned_cols=184 Identities=10% Similarity=-0.010 Sum_probs=110.9
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeE-EEecCCCCCeEEEe--ecCCCeEEEEE--------
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISE-TVWKNPGGRLIGMS--WSEDQTLICVV-------- 105 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~t-i~~~~~~~~I~~~~--fs~de~Lv~v~-------- 105 (839)
..++||+|..||..+ .+..|.+|+..+..... ...+. +.+.... +++|+.++++.
T Consensus 85 ~~~~spdg~~l~~~~------------~~~~l~~~d~~~g~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~ 150 (388)
T 3pe7_A 85 GGFLSPDDDALFYVK------------DGRNLMRVDLATLEENVVYQVPA--EWVGYGTWVANSDCTKLVGIEIRREDWV 150 (388)
T ss_dssp SCEECTTSSEEEEEE------------TTTEEEEEETTTCCEEEEEECCT--TEEEEEEEEECTTSSEEEEEEEEGGGCC
T ss_pred ceEEcCCCCEEEEEe------------CCCeEEEEECCCCcceeeeechh--hcccccceeECCCCCeeccccccCcccc
Confidence 568999999999987 35789999976544333 33333 4454444 48999865432
Q ss_pred ---------------eCCeEEEEeCC-CCccccCCCCCccccccCeEEEEEEC-CeEEEEe-cC-------CeEEEEecC
Q 003205 106 ---------------QDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWG-NGVVCVT-EA-------NRYFCMADF 160 (839)
Q Consensus 106 ---------------~dGtv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t-~~-------~~~~~v~~~ 160 (839)
.++.+++|++. |+... ...+ ...+..+.++| +|..++. .. .++|.++ .
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~-----~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d-~ 223 (388)
T 3pe7_A 151 PLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQE-----NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLIN-E 223 (388)
T ss_dssp CCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEE-----SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEE-T
T ss_pred cccccchhhhhhccCCcceEEEEECCCCceEE-eecC-----CccccccEECCCCCCEEEEEEecCCCCCcceEEEEe-C
Confidence 23678888875 44433 2222 34578889999 8875543 21 2566654 3
Q ss_pred CCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeC--C---eEEEEecCCcc--cc--cCC------CceEEEEC
Q 003205 161 ATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTD--A---GILMLDEDGVQ--KV--DDT------LSQKMAVS 225 (839)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d--~---tv~l~~~~~~~--~~--~~~------~i~~ia~S 225 (839)
++.....+.. .....+ +..|.|||||+.+++++.+ + +|++|+..+.. .. ..+ ....+++|
T Consensus 224 ~~~~~~~l~~----~~~~~~-~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~s 298 (388)
T 3pe7_A 224 DGTNMRKVKT----HAEGES-CTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMV 298 (388)
T ss_dssp TSCCCEESCC----CCTTEE-EEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEE
T ss_pred CCCceEEeee----CCCCcc-cccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEc
Confidence 3344445432 111112 4456799999999887762 2 39999987543 11 111 12234799
Q ss_pred CCCcEEEEee---------cCCeEEEEecC
Q 003205 226 PNGNFVACFT---------HDGRLVVNNTN 246 (839)
Q Consensus 226 png~~iA~~~---------~~g~i~i~ssd 246 (839)
|||+.||+.. .++.|++|+.+
T Consensus 299 pdg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 328 (388)
T 3pe7_A 299 GDGSDAPVDVQDDSGYKIENDPFLYVFNMK 328 (388)
T ss_dssp EEECCC------------CCCCEEEEEETT
T ss_pred cCCCcceeEeeeccccccCCCCEEEEEecc
Confidence 9999988753 34468888765
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.55 E-value=2.3e-06 Score=101.50 Aligned_cols=187 Identities=10% Similarity=0.002 Sum_probs=115.9
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeE---------EEeec--CCCeE-
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLI---------GMSWS--EDQTL- 101 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~---------~~~fs--~de~L- 101 (839)
...++++++ -++.++.+ .+.++...||. ..|.....+..+. ..+. .+.|+ |||+.
T Consensus 26 ~~~~~~s~~--~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 26 PACVGAVGD--EVWWVAPR--------PAEAGRATLVRRRADGAEESALPAP--WNVRNRVFEYSGFPWAGVPRPAGGPL 93 (662)
T ss_dssp CEEEEEETT--EEEEEEEE--------TTTTTEEEEEEECTTSCEEESSCTT--CCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred cceeEEcCC--eEEEEecC--------cccCCcEEEEEECCCCCcceeCCCC--ccccccccccCCccceeeeecCCCeE
Confidence 345667755 45555421 01356777887 4555555665554 4544 56666 99986
Q ss_pred EEEEeC--CeEEEEeCC----CCccccCCC----CCccccccCeEEEEEECCeEEEEecC------------CeEEEEec
Q 003205 102 ICVVQD--GTVYRYNIH----AELIEPNAS----MGKECFEENVVECVFWGNGVVCVTEA------------NRYFCMAD 159 (839)
Q Consensus 102 v~v~~d--Gtv~l~~~~----G~~~~~~~g----~~~~~~~~~V~~~~~~~~G~v~~t~~------------~~~~~v~~ 159 (839)
+..+.+ +.|.+++.. |+..+.... + ...+..+.++++|..++..+ .++| +++
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~-----~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~-~~~ 167 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGG-----GLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLA-AVP 167 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTT-----CEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEE-EEE
T ss_pred EEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCC-----CccccCcEECCCCCEEEEEEecccCCCCCCceeEEE-EEE
Confidence 666654 445555776 554332221 2 34577889999986555432 2344 445
Q ss_pred CCC------ceEEEcC-CCCCCCCCceEEEeCCCCCCCCcEEEEEEeCC--------eEEEEecCC-c---c-----ccc
Q 003205 160 FAT------MKVCELA-RPEVEELPHCVAVIEPKYTMTGSVEVLIGTDA--------GILMLDEDG-V---Q-----KVD 215 (839)
Q Consensus 160 ~~~------~~~~~l~-~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~--------tv~l~~~~~-~---~-----~~~ 215 (839)
..+ .....+. . . .. .+..+.|||||+.+++.+.++ +|++|+.++ . . ..+
T Consensus 168 ~~~~~~~~~~~~~~l~~~-----~-~~-~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~ 240 (662)
T 3azo_A 168 LDGSAAADRSAVRELSDD-----A-HR-FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP 240 (662)
T ss_dssp TTSTTTTCGGGSEESSCS-----C-SS-EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred CCCCccccCCceeEEEec-----C-CC-cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence 555 4445553 2 1 11 356678999999999988653 799999873 2 2 223
Q ss_pred CCCceEEEECCCCcEEEEeecCC--eEEEEecC
Q 003205 216 DTLSQKMAVSPNGNFVACFTHDG--RLVVNNTN 246 (839)
Q Consensus 216 ~~~i~~ia~Spng~~iA~~~~~g--~i~i~ssd 246 (839)
...+..+++||||+++++.+.+| +||+|+.+
T Consensus 241 ~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~ 273 (662)
T 3azo_A 241 EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPA 273 (662)
T ss_dssp TBCEEEEEECTTSCEEEEECTTSSCEEEEECTT
T ss_pred CceEcceEECCCCeEEEEECCCCCeEEEEEECC
Confidence 56789999999999777777777 57777643
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.54 E-value=2e-06 Score=93.06 Aligned_cols=193 Identities=9% Similarity=0.030 Sum_probs=119.3
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCC--ceeEEEe-------cCCCCCeEEEeecC-CCeEEEEE
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV--LISETVW-------KNPGGRLIGMSWSE-DQTLICVV 105 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~--ll~ti~~-------~~~~~~I~~~~fs~-de~Lv~v~ 105 (839)
..++++|+|..+++-. ..+.|++|+.+|+ .+.++.- ......+.+++|+| ++.+.++.
T Consensus 94 ~gia~d~~g~l~v~d~------------~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d 161 (329)
T 3fvz_A 94 HGLSIDTDGNYWVTDV------------ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSD 161 (329)
T ss_dssp EEEEECTTSCEEEEET------------TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEE
T ss_pred eEEEECCCCCEEEEEC------------CCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEe
Confidence 4678888888555432 4688999999998 6777632 11124789999999 88886666
Q ss_pred --eCCeEEEEeCCCCccccCCCCCcc-----ccccCeEEEEEECC-eEEEEecC--CeEEEEecCC-CceEEEcCCCCCC
Q 003205 106 --QDGTVYRYNIHAELIEPNASMGKE-----CFEENVVECVFWGN-GVVCVTEA--NRYFCMADFA-TMKVCELARPEVE 174 (839)
Q Consensus 106 --~dGtv~l~~~~G~~~~~~~g~~~~-----~~~~~V~~~~~~~~-G~v~~t~~--~~~~~v~~~~-~~~~~~l~~~~~~ 174 (839)
.++.|++|+..|++....-..... ..-.....+.+.++ |.++++.. +++..+ +.+ +.....+.....
T Consensus 162 ~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~-~~~~G~~~~~~~~~~~- 239 (329)
T 3fvz_A 162 GYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCF-KTDTKEFVREIKHASF- 239 (329)
T ss_dssp CSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEE-ETTTCCEEEEECCTTT-
T ss_pred CCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEE-ECCCCcEEEEEecccc-
Confidence 489999999999885433211000 00223677888886 88887753 345444 444 344444433222
Q ss_pred CCCceEEEeCCCCCC------CCcEEEEEEeCCeEEEEecC-Ccc--c-----ccCCCceEEEECCCCcEEEEeecCCeE
Q 003205 175 ELPHCVAVIEPKYTM------TGSVEVLIGTDAGILMLDED-GVQ--K-----VDDTLSQKMAVSPNGNFVACFTHDGRL 240 (839)
Q Consensus 175 ~~~~~w~vi~~~~S~------~~~~~v~~s~d~tv~l~~~~-~~~--~-----~~~~~i~~ia~Spng~~iA~~~~~g~i 240 (839)
....+.+ .|+| +|...+.-..+++|++|+.. |.. . .+......|+++|+|..+++-..+++|
T Consensus 240 -~~~~~~~---~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I 315 (329)
T 3fvz_A 240 -GRNVFAI---SYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTV 315 (329)
T ss_dssp -TTCEEEE---EEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCE
T ss_pred -CCCccee---eecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEE
Confidence 2222333 2334 22211111224578889854 332 1 234457899999999888887788899
Q ss_pred EEEecC
Q 003205 241 VVNNTN 246 (839)
Q Consensus 241 ~i~ssd 246 (839)
++|+.+
T Consensus 316 ~~~~~~ 321 (329)
T 3fvz_A 316 WKFTLT 321 (329)
T ss_dssp EEEEEE
T ss_pred EEEeCC
Confidence 999865
No 176
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.52 E-value=1.6e-05 Score=85.41 Aligned_cols=194 Identities=11% Similarity=0.126 Sum_probs=123.0
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEE-ecCCCCCeEEEeecCCCeEEEEEeC-----Ce
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETV-WKNPGGRLIGMSWSEDQTLICVVQD-----GT 109 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~-~~~~~~~I~~~~fs~de~Lv~v~~d-----Gt 109 (839)
..++++|+|...++.. .++.|.+|+..+..+..+. .+. ..+.++.|++++.++++... +.
T Consensus 48 ~~~~~~~~g~l~~~~~------------~~~~i~~~d~~~~~~~~~~~~~~--~~~~~i~~~~dg~l~v~~~~~~~~~~~ 113 (333)
T 2dg1_A 48 EGLNFDRQGQLFLLDV------------FEGNIFKINPETKEIKRPFVSHK--ANPAAIKIHKDGRLFVCYLGDFKSTGG 113 (333)
T ss_dssp EEEEECTTSCEEEEET------------TTCEEEEECTTTCCEEEEEECSS--SSEEEEEECTTSCEEEEECTTSSSCCE
T ss_pred cCcEECCCCCEEEEEC------------CCCEEEEEeCCCCcEEEEeeCCC--CCcceEEECCCCcEEEEeCCCCCCCce
Confidence 4678889988555443 4688999998766665544 333 78999999999998666544 48
Q ss_pred EEEEeCCCCccc-cCCCCCccccccCeEEEEEECCeEEEEecC--------CeEEEEecCCCceEEEcCCCCCCCCCceE
Q 003205 110 VYRYNIHAELIE-PNASMGKECFEENVVECVFWGNGVVCVTEA--------NRYFCMADFATMKVCELARPEVEELPHCV 180 (839)
Q Consensus 110 v~l~~~~G~~~~-~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~--------~~~~~v~~~~~~~~~~l~~~~~~~~~~~w 180 (839)
|.+|+..|...+ +..... . ...+.++.+.++|.++++.. +.+|.++. ++.....+.. .. ..+..
T Consensus 114 i~~~d~~~~~~~~~~~~~~-~--~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~-~~-~~~~~- 186 (333)
T 2dg1_A 114 IFAATENGDNLQDIIEDLS-T--AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSP-DFRTVTPIIQ-NI-SVANG- 186 (333)
T ss_dssp EEEECTTSCSCEEEECSSS-S--CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECT-TSCCEEEEEE-EE-SSEEE-
T ss_pred EEEEeCCCCEEEEEEccCc-c--CCcccceEECCCCCEEEEeccccccCCCceEEEEeC-CCCEEEEeec-CC-Ccccc-
Confidence 999998765533 211110 1 34678888888888777754 35666542 2222333321 01 11222
Q ss_pred EEeCCCCCCCCcEEEEEE-eCCeEEEEecC--Ccc--c--------cc-CCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 181 AVIEPKYTMTGSVEVLIG-TDAGILMLDED--GVQ--K--------VD-DTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 181 ~vi~~~~S~~~~~~v~~s-~d~tv~l~~~~--~~~--~--------~~-~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
+ .++|+|+.+.+.+ .+++|++|+.. +.. . .. ......|+++|+|++.+....++.|.+|+.+
T Consensus 187 -i---~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 187 -I---ALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp -E---EECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred -e---EECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 2 3566888665554 47899999874 321 0 01 1246789999999987776677899999875
Q ss_pred CCCcccccc
Q 003205 247 FSSPVIDES 255 (839)
Q Consensus 247 ~~~~l~e~~ 255 (839)
++.+..+.
T Consensus 263 -g~~~~~~~ 270 (333)
T 2dg1_A 263 -GYPIGQIL 270 (333)
T ss_dssp -SCEEEEEE
T ss_pred -CCEEEEEE
Confidence 44444444
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.52 E-value=5.6e-06 Score=89.50 Aligned_cols=190 Identities=13% Similarity=0.038 Sum_probs=113.6
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhh------------cccCCceEEEEcCC-CCceeEEEecCCCCCeEEEeecCCCeE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLY------------AESALRKLRIFNSA-GVLISETVWKNPGGRLIGMSWSEDQTL 101 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~------------~~~~~~~I~iy~~~-G~ll~ti~~~~~~~~I~~~~fs~de~L 101 (839)
...+|++|+|..++..+......... ....+++|.+|+.. |+++..+.-.. ...+.+++|++++.+
T Consensus 26 v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-~~~p~gia~d~~g~l 104 (329)
T 3fvz_A 26 VSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNL-FYLPHGLSIDTDGNY 104 (329)
T ss_dssp EEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTT-CSSEEEEEECTTSCE
T ss_pred ceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCc-cCCceEEEECCCCCE
Confidence 45899999999998776542111000 00123589999985 88876654222 357899999999997
Q ss_pred E-EEEeCCeEEEEeCCCCc--cccCC-----CCCccccccCeEEEEEEC-CeEEEEecC--CeEEEEecCCCceEEEcCC
Q 003205 102 I-CVVQDGTVYRYNIHAEL--IEPNA-----SMGKECFEENVVECVFWG-NGVVCVTEA--NRYFCMADFATMKVCELAR 170 (839)
Q Consensus 102 v-~v~~dGtv~l~~~~G~~--~~~~~-----g~~~~~~~~~V~~~~~~~-~G~v~~t~~--~~~~~v~~~~~~~~~~l~~ 170 (839)
. +-..+++|++|+..|+. ....- |.... .-.....+.+.+ +|.++++.. .+.+.+.+.++.....+..
T Consensus 105 ~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~-~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~ 183 (329)
T 3fvz_A 105 WVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQN-HFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGE 183 (329)
T ss_dssp EEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTT-CCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECE
T ss_pred EEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCcc-ccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEecc
Confidence 5 44557899999999873 22111 00000 023567889998 898888864 3333344444444444432
Q ss_pred CCCC--------CCCceEEEeCCCCCCC-CcEEEEEEeCCeEEEEecC-Ccc------cccCCCceEEEECCCCcEEE
Q 003205 171 PEVE--------ELPHCVAVIEPKYTMT-GSVEVLIGTDAGILMLDED-GVQ------KVDDTLSQKMAVSPNGNFVA 232 (839)
Q Consensus 171 ~~~~--------~~~~~w~vi~~~~S~~-~~~~v~~s~d~tv~l~~~~-~~~------~~~~~~i~~ia~Spng~~iA 232 (839)
.+.+ ..|...+ ++|+ |.+.|.-..+++|.+|+.+ |.. ......+..++++| |..++
T Consensus 184 ~g~~~~~~~~~~~~p~gia-----~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~ 255 (329)
T 3fvz_A 184 ESSGSSPRPGQFSVPHSLA-----LVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFA 255 (329)
T ss_dssp ECCSSSCCTTEESCEEEEE-----EETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEE
T ss_pred CCCCCCCCCcccCCCcEEE-----EECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEE
Confidence 1110 1244333 3347 5555554558899999987 653 12345577999999 54333
No 178
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=98.51 E-value=1.4e-06 Score=95.64 Aligned_cols=179 Identities=15% Similarity=0.071 Sum_probs=106.5
Q ss_pred CCceEEEEcC--CCCceeEEEe---cCCCCCeEEEeecCCCeEEEEE--eCCeEEEEeCC--CCccc---cCC-CCCccc
Q 003205 64 ALRKLRIFNS--AGVLISETVW---KNPGGRLIGMSWSEDQTLICVV--QDGTVYRYNIH--AELIE---PNA-SMGKEC 130 (839)
Q Consensus 64 ~~~~I~iy~~--~G~ll~ti~~---~~~~~~I~~~~fs~de~Lv~v~--~dGtv~l~~~~--G~~~~---~~~-g~~~~~ 130 (839)
.++++.+|+. +|++..++.. .. ...+.++.|+|||+.+.+. .+++|++|++. |++.. ... .+
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~---- 191 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQE-NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP---- 191 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCT-TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST----
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCC-CCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCC----
Confidence 3688999985 5777666553 22 2679999999999854443 36789999874 76532 111 11
Q ss_pred cccCeEEEEEECCeEEE-Eec--CCeEEEEe-cCCCceE----EEcCCCCCC--CCC----ceEEEeCCC-CCCCCcEEE
Q 003205 131 FEENVVECVFWGNGVVC-VTE--ANRYFCMA-DFATMKV----CELARPEVE--ELP----HCVAVIEPK-YTMTGSVEV 195 (839)
Q Consensus 131 ~~~~V~~~~~~~~G~v~-~t~--~~~~~~v~-~~~~~~~----~~l~~~~~~--~~~----~~w~vi~~~-~S~~~~~~v 195 (839)
...+..+.|+++|..+ ++. ++.+..+. +..+... ..+...+.+ ... ..+.+.... +||||+.++
T Consensus 192 -g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~ 270 (365)
T 1jof_A 192 -GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp -TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred -CCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence 2357888999999443 333 33433221 2222221 122221111 001 001122335 778999887
Q ss_pred EEEeC-C-----eEEEEecC--Ccc-c----c--cCCCceEEEECC---CCcEEEEeecC-CeEEEEecCCC
Q 003205 196 LIGTD-A-----GILMLDED--GVQ-K----V--DDTLSQKMAVSP---NGNFVACFTHD-GRLVVNNTNFS 248 (839)
Q Consensus 196 ~~s~d-~-----tv~l~~~~--~~~-~----~--~~~~i~~ia~Sp---ng~~iA~~~~~-g~i~i~ssd~~ 248 (839)
..+.+ + +|.+|+.+ |.. . . .......++||| ||++|+..+.+ ++|.||+.+-.
T Consensus 271 v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 66543 3 89999874 332 1 1 233467899999 89999998864 88999987633
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.49 E-value=1.6e-06 Score=95.14 Aligned_cols=182 Identities=10% Similarity=0.001 Sum_probs=111.7
Q ss_pred EEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEe-cCCCCCeEE-------------------EeecC
Q 003205 38 VACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVW-KNPGGRLIG-------------------MSWSE 97 (839)
Q Consensus 38 va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~-~~~~~~I~~-------------------~~fs~ 97 (839)
.++||+|..||..++ ++.|.+|+..|.....+.- +. +.... ..|+|
T Consensus 86 ~~~spdg~~l~~~~~------------~~~l~~~d~~~~~~~~~~~~~~--~~~~~g~~l~~~~~~~~~~~~~~~~~~sp 151 (396)
T 3c5m_A 86 GFISTDERAFFYVKN------------ELNLMKVDLETLEEQVIYTVDE--EWKGYGTWVANSDCTKLVGIEILKRDWQP 151 (396)
T ss_dssp CEECTTSSEEEEEET------------TTEEEEEETTTCCEEEEEECCT--TEEEEEEEEECTTSSEEEEEEEEGGGCCC
T ss_pred ceECCCCCEEEEEEc------------CCcEEEEECCCCCcEEEEeccc--ccCCCCCEEEeccCCccccccccccccCC
Confidence 678999999999873 4579999976654444332 22 32222 46788
Q ss_pred CCeEE-EE-----EeCCeEEEEeCCC-CccccCCCCCccccccCeEEEEEEC-CeEE--EEecC------CeEEEEecCC
Q 003205 98 DQTLI-CV-----VQDGTVYRYNIHA-ELIEPNASMGKECFEENVVECVFWG-NGVV--CVTEA------NRYFCMADFA 161 (839)
Q Consensus 98 de~Lv-~v-----~~dGtv~l~~~~G-~~~~~~~g~~~~~~~~~V~~~~~~~-~G~v--~~t~~------~~~~~v~~~~ 161 (839)
+++.+ ++ ..++.+++|++.+ +.... ..+ ...+..+.+++ +|-. +++.+ .++|.++ .+
T Consensus 152 dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~-~~~-----~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d-~~ 224 (396)
T 3c5m_A 152 LTSWEKFAEFYHTNPTCRLIKVDIETGELEVI-HQD-----TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVN-ED 224 (396)
T ss_dssp CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE-EEE-----SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEE-TT
T ss_pred CCcceeeeeeccCCCcceEEEEECCCCcEEee-ccC-----CcccccceECCCCCCEEEEEecCCCCCCCceEEEEE-CC
Confidence 87743 22 3566788888754 44322 222 44577888998 6753 33322 2455443 44
Q ss_pred CceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeC-----CeEEEEecCCcc--ccc-CCCceEEEECC-CCcEEE
Q 003205 162 TMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTD-----AGILMLDEDGVQ--KVD-DTLSQKMAVSP-NGNFVA 232 (839)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d-----~tv~l~~~~~~~--~~~-~~~i~~ia~Sp-ng~~iA 232 (839)
+.....+.. ....+.+..+.|||||+.+++++.+ ++|++|+..+.. ... ...+. +++|| ||+.++
T Consensus 225 ~~~~~~l~~-----~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~l~ 298 (396)
T 3c5m_A 225 GSNVRKIKE-----HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMSNFDGSLMV 298 (396)
T ss_dssp SCCCEESSC-----CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEECSSSSEEE
T ss_pred CCceeEeec-----cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCccCCCCceEE
Confidence 433344432 1113556667899999998888764 459999986543 111 11233 89999 999888
Q ss_pred Eee----------------cCCeEEEEecC
Q 003205 233 CFT----------------HDGRLVVNNTN 246 (839)
Q Consensus 233 ~~~----------------~~g~i~i~ssd 246 (839)
+.+ .++.|++|+.+
T Consensus 299 ~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~ 328 (396)
T 3c5m_A 299 GDGCDAPVDVADADSYNIENDPFLYVLNTK 328 (396)
T ss_dssp EEECCC----------CCCCCCEEEEEETT
T ss_pred EecCCcceeeccccccccCCCCcEEEEecc
Confidence 754 23568888755
No 180
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.49 E-value=2.7e-06 Score=93.29 Aligned_cols=190 Identities=14% Similarity=0.042 Sum_probs=111.3
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeE-EEeecCCCe-EEEEEeCCeEEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLI-GMSWSEDQT-LICVVQDGTVYR 112 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~-~~~fs~de~-Lv~v~~dGtv~l 112 (839)
...+++||+|..||...+. .....|.+|+..|.....+.... +... ...|||||+ |+.+..++.+++
T Consensus 38 ~~~~~~SpdG~~l~~~~~~---------~g~~~l~~~d~~~~~~~~l~~~~--~~~~~~~~~spdg~~l~~~~~~~~l~~ 106 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDF---------DGNRNYYLLNLETQQAVQLTEGK--GDNTFGGFISTDERAFFYVKNELNLMK 106 (396)
T ss_dssp TTSCCBCTTSCEEEEEECT---------TSSCEEEEEETTTTEEEECCCSS--CBCTTTCEECTTSSEEEEEETTTEEEE
T ss_pred eecCcCCCCCCEEEEEEec---------CCCceEEEEECCCCcEEEeecCC--CCccccceECCCCCEEEEEEcCCcEEE
Confidence 3467899999999998742 13467899998776665554433 3333 377999997 568888899999
Q ss_pred EeCCCC-ccccCCCCCccccccCeEE-------------------EEEECCeEEEEe-------cCCeEEEEecCCCceE
Q 003205 113 YNIHAE-LIEPNASMGKECFEENVVE-------------------CVFWGNGVVCVT-------EANRYFCMADFATMKV 165 (839)
Q Consensus 113 ~~~~G~-~~~~~~g~~~~~~~~~V~~-------------------~~~~~~G~v~~t-------~~~~~~~v~~~~~~~~ 165 (839)
|++.+. .......+ ....-+ +.++++|..++. ....++. .+..+...
T Consensus 107 ~d~~~~~~~~~~~~~-----~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~-~d~~~g~~ 180 (396)
T 3c5m_A 107 VDLETLEEQVIYTVD-----EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK-VDIETGEL 180 (396)
T ss_dssp EETTTCCEEEEEECC-----TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE-EETTTCCE
T ss_pred EECCCCCcEEEEecc-----cccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE-EECCCCcE
Confidence 997643 32222211 110001 111222222111 1123443 34444333
Q ss_pred EEcCCCCCCCCCceEEEeCCCCCC-CCcEEEEEEeC------CeEEEEecCCcc--cc-c---CCCceEEEECCCCcEEE
Q 003205 166 CELARPEVEELPHCVAVIEPKYTM-TGSVEVLIGTD------AGILMLDEDGVQ--KV-D---DTLSQKMAVSPNGNFVA 232 (839)
Q Consensus 166 ~~l~~~~~~~~~~~w~vi~~~~S~-~~~~~v~~s~d------~tv~l~~~~~~~--~~-~---~~~i~~ia~Spng~~iA 232 (839)
..+.. .... +..+.||| +|+.+++++.+ ..|++++.++.. .. . ...+..++|||||+.||
T Consensus 181 ~~~~~----~~~~---~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~ 253 (396)
T 3c5m_A 181 EVIHQ----DTAW---LGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMA 253 (396)
T ss_dssp EEEEE----ESSC---EEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEE
T ss_pred Eeecc----CCcc---cccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEE
Confidence 33321 1111 22346788 78888887753 468999987643 11 1 12467889999999988
Q ss_pred EeecC-----CeEEEEecCCC
Q 003205 233 CFTHD-----GRLVVNNTNFS 248 (839)
Q Consensus 233 ~~~~~-----g~i~i~ssd~~ 248 (839)
+.+.+ ++|++|+.+-+
T Consensus 254 ~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 254 YVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp EEEEETTTCCEEEEEECTTTC
T ss_pred EEecCCCCccceEEEEECCCC
Confidence 88654 44999976533
No 181
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.42 E-value=6.8e-05 Score=79.15 Aligned_cols=202 Identities=13% Similarity=0.051 Sum_probs=122.9
Q ss_pred CCCCceeEEEecCCCCCeEEEeecCCCe-E-EEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEec
Q 003205 73 SAGVLISETVWKNPGGRLIGMSWSEDQT-L-ICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTE 150 (839)
Q Consensus 73 ~~G~ll~ti~~~~~~~~I~~~~fs~de~-L-v~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~ 150 (839)
..|..+..+.-.. ...-++.|+|+++ | ++...+|.|.+|+..|.. +....+ ...+..+.+.++|.++++.
T Consensus 15 ~~~~~~~~l~~~~--~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~-~~~~~~-----~~~~~~l~~~~dg~l~v~~ 86 (296)
T 3e5z_A 15 PAGAEARRLADGF--TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQL-SPEMHP-----SHHQNGHCLNKQGHLIACS 86 (296)
T ss_dssp CTTCCCEEEECCC--SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCE-EEEESS-----CSSEEEEEECTTCCEEEEE
T ss_pred CCCCcEEEEecCC--ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCe-EEEECC-----CCCcceeeECCCCcEEEEe
Confidence 3455666666444 6778999999997 4 566778999999988773 322223 3457778888888777776
Q ss_pred CC--eEEEEecCCCceEEEcCCCCCC---CCCceEEEeCCCCCCCCcEEEEEE-----------------eCCeEEEEec
Q 003205 151 AN--RYFCMADFATMKVCELARPEVE---ELPHCVAVIEPKYTMTGSVEVLIG-----------------TDAGILMLDE 208 (839)
Q Consensus 151 ~~--~~~~v~~~~~~~~~~l~~~~~~---~~~~~w~vi~~~~S~~~~~~v~~s-----------------~d~tv~l~~~ 208 (839)
.+ .++.+ +..+.....+.....+ ..|... .++|+|.+.+.-+ ..+.|+.++.
T Consensus 87 ~~~~~i~~~-d~~~g~~~~~~~~~~~~~~~~~~~i-----~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 160 (296)
T 3e5z_A 87 HGLRRLERQ-REPGGEWESIADSFEGKKLNSPNDV-----CLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP 160 (296)
T ss_dssp TTTTEEEEE-CSTTCCEEEEECEETTEECCCCCCE-----EECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred cCCCeEEEE-cCCCCcEEEEeeccCCCCCCCCCCE-----EECCCCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence 43 45544 4433333333221000 122222 2345888666432 1457888887
Q ss_pred CCcc---cccCCCceEEEECCCCcEEEEeecCCeEEEEecCC-CCc---cccccCCCCCCCCceeeecCceEEEEecCEE
Q 003205 209 DGVQ---KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNF-SSP---VIDESCESALPPEQIAWCGMDSVLLYWNDML 281 (839)
Q Consensus 209 ~~~~---~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~-~~~---l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l 281 (839)
++.. .........+++||+|+.+++-+.+++|++|+.+- +.. ...+ ......|..|++..+..+.+.-+..|
T Consensus 161 ~g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~~~~v 239 (296)
T 3e5z_A 161 DGTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASAGDGV 239 (296)
T ss_dssp TSCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEETTEE
T ss_pred CCCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEcCCeE
Confidence 7553 23344568999999999986666678899998651 221 1122 11234677888775555544445667
Q ss_pred EEEcCCCC
Q 003205 282 VMVAPQAE 289 (839)
Q Consensus 282 ~lig~~~~ 289 (839)
..+.|.+.
T Consensus 240 ~~~~~~g~ 247 (296)
T 3e5z_A 240 HVLTPDGD 247 (296)
T ss_dssp EEECTTSC
T ss_pred EEECCCCC
Confidence 66766655
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.36 E-value=1.4e-05 Score=95.91 Aligned_cols=200 Identities=15% Similarity=0.132 Sum_probs=120.9
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCe-----
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGT----- 109 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGt----- 109 (839)
..+++||+|..||...++. ++...+|++|+..|.......... ..+.++.|||||+ |+.+..++.
T Consensus 128 ~~~~~SPDg~~la~~~~~~-------G~~~~~i~v~d~~tg~~~~~~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~ 198 (710)
T 2xdw_A 128 RGYAFSEDGEYFAYGLSAS-------GSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSD 198 (710)
T ss_dssp EEEEECTTSSEEEEEEEET-------TCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred EEEEECCCCCEEEEEEcCC-------CCceEEEEEEECCCCCCCcccccC--cccceEEEEeCCCEEEEEEECCcccccc
Confidence 4689999999999987531 122349999997665444333222 3456789999997 667777766
Q ss_pred -----------EEEEeCCCCccc--cCCCCCccccccCeEEEEEECCeEEEEec-------CCeEEEEecCCC------c
Q 003205 110 -----------VYRYNIHAELIE--PNASMGKECFEENVVECVFWGNGVVCVTE-------ANRYFCMADFAT------M 163 (839)
Q Consensus 110 -----------v~l~~~~G~~~~--~~~g~~~~~~~~~V~~~~~~~~G~v~~t~-------~~~~~~v~~~~~------~ 163 (839)
|++|++.+...+ ........ ...+..+.++++|..++.. +.++|.++ ..+ +
T Consensus 199 ~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~--~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d-~~~~~~~~~~ 275 (710)
T 2xdw_A 199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDE--PKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCD-LQQESNGITG 275 (710)
T ss_dssp SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTC--TTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEE-GGGSSSSSCS
T ss_pred ccccccCCCCEEEEEECCCCcccceEEeccCCC--CeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEE-CcccccccCC
Confidence 888987543311 11111000 2346788999988654432 23455543 332 2
Q ss_pred --eEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCC----eEEEEecCCc-----c--cccC--CCceEEEECCCC
Q 003205 164 --KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDA----GILMLDEDGV-----Q--KVDD--TLSQKMAVSPNG 228 (839)
Q Consensus 164 --~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~----tv~l~~~~~~-----~--~~~~--~~i~~ia~Spng 228 (839)
....+.. ....... .+|++|+.+++.+..+ .|++|+.++. . ..+. ..+..++++|++
T Consensus 276 ~~~~~~l~~----~~~~~~~----~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 347 (710)
T 2xdw_A 276 ILKWVKLID----NFEGEYD----YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN 347 (710)
T ss_dssp SCCCEEEEC----SSSSCEE----EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT
T ss_pred ccceEEeeC----CCCcEEE----EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC
Confidence 2344432 1111122 2455999888887633 6999998753 2 1222 257789999988
Q ss_pred cEEEEeecCCe--EEEEecCCCCcccccc
Q 003205 229 NFVACFTHDGR--LVVNNTNFSSPVIDES 255 (839)
Q Consensus 229 ~~iA~~~~~g~--i~i~ssd~~~~l~e~~ 255 (839)
.+++....+|. |++++..-++.+.++.
T Consensus 348 ~lv~~~~~~g~~~l~~~~~~~g~~~~~l~ 376 (710)
T 2xdw_A 348 FLVLCYLHDVKNTLQLHDLATGALLKIFP 376 (710)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred EEEEEEEECCEEEEEEEECCCCCEEEecC
Confidence 89999998885 6667642244444443
No 183
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.34 E-value=0.00069 Score=70.64 Aligned_cols=234 Identities=9% Similarity=0.063 Sum_probs=139.3
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEe-CCeEEE
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQ-DGTVYR 112 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~-dGtv~l 112 (839)
....+++.|+|....... ..+.|.+|+.+|+.. .+........+.++.+++++.+.++.. ++.|..
T Consensus 21 ~p~~i~~d~~g~l~v~~~------------~~~~v~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~ 87 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQH------------KANKISSLDQSGRIK-EFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGK 87 (300)
T ss_dssp CEEEEEECTTSCEEEEET------------TTTEEEEECTTSCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred CcceeeECCCCCEEEEcC------------CCCeEEEECCCCceE-EEECCCCCCcceeEEECCCCCEEEEecCCCeEEE
Confidence 345788889887655542 368899999886543 444332126799999999999876665 688999
Q ss_pred EeCCCCccccCCCCCccccccCeEEEEEECCeEEEEec--CCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCC
Q 003205 113 YNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTE--ANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMT 190 (839)
Q Consensus 113 ~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~--~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~ 190 (839)
|+..|++..+..+.. ...+..+.+.++|.++++. ++.++.++. + .....+..+.....|.+.+ +. ++
T Consensus 88 ~d~~g~~~~~~~~~~----~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~-g~~~~~~~~~~~~~~~~i~-~d----~~ 156 (300)
T 2qc5_A 88 LSKKGGFTEYPLPQP----DSGPYGITEGLNGDIWFTQLNGDRIGKLTA-D-GTIYEYDLPNKGSYPAFIT-LG----SD 156 (300)
T ss_dssp ECTTSCEEEEECSST----TCCEEEEEECSTTCEEEEETTTTEEEEECT-T-SCEEEEECSSTTCCEEEEE-EC----TT
T ss_pred ECCCCCeEEecCCCC----CCCCccceECCCCCEEEEccCCCeEEEECC-C-CCEEEccCCCCCCCceeEE-EC----CC
Confidence 998888755444321 3456777777788777765 345666543 2 2222222111112343332 33 37
Q ss_pred CcEEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCC-CCCCCCc
Q 003205 191 GSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCE-SALPPEQ 264 (839)
Q Consensus 191 ~~~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~-~~~~p~~ 264 (839)
|.+.+....++.|+.++.++.. .........|+++|+|.+.+.-...+.|.+++.+ + .+..+... ....|..
T Consensus 157 g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g-~~~~~~~~~~~~~~~~ 234 (300)
T 2qc5_A 157 NALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-G-EISEYDIPTPNARPHA 234 (300)
T ss_dssp SSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-C-CEEEEECSSTTCCEEE
T ss_pred CCEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-C-cEEEEECCCCCCCceE
Confidence 7744333337789999986653 1223457899999999876665566788888763 2 22233211 1234666
Q ss_pred eeeecCceEEEEe--cCEEEEEcCCCCceEe
Q 003205 265 IAWCGMDSVLLYW--NDMLVMVAPQAEPVQY 293 (839)
Q Consensus 265 ~~WcG~d~vv~~~--~~~l~lig~~~~~v~f 293 (839)
|....+..+.+.- +..+..+.+.+....|
T Consensus 235 i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~ 265 (300)
T 2qc5_A 235 ITAGKNSEIWFTEWGANQIGRITNDNTIQEY 265 (300)
T ss_dssp EEECSTTCEEEEETTTTEEEEECTTSCEEEE
T ss_pred EEECCCCCEEEeccCCCeEEEECCCCcEEEE
Confidence 6665444433322 3466666665543334
No 184
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.30 E-value=2.1e-05 Score=86.49 Aligned_cols=246 Identities=10% Similarity=0.026 Sum_probs=137.3
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCC----CCCeEEEeecCCCeEE-EEEe--CC
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNP----GGRLIGMSWSEDQTLI-CVVQ--DG 108 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~----~~~I~~~~fs~de~Lv-~v~~--dG 108 (839)
.++++|+|..+.+........ ..+..+++|.+|+. .++.+.+|..... ......+.|||||+.+ +... ++
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~--~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~ 131 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERI--TRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPAT 131 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTS--SSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSE
T ss_pred ceEECCCCCEEEEEEeccccc--ccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCC
Confidence 789999999998875200000 00012578999996 6788999886420 0346789999999854 4443 68
Q ss_pred eEEEEeCC-CCccccCCCCCccccccCeEEEEEECCe---EEEEecCCeEEEEecCCCceEE-EcC---CCCCCCCCceE
Q 003205 109 TVYRYNIH-AELIEPNASMGKECFEENVVECVFWGNG---VVCVTEANRYFCMADFATMKVC-ELA---RPEVEELPHCV 180 (839)
Q Consensus 109 tv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~G---~v~~t~~~~~~~v~~~~~~~~~-~l~---~~~~~~~~~~w 180 (839)
+|.+||.. ++.....++. .+-..+.++++| ++..+.++.+..+..-.+.+.. ... ....+..|. +
T Consensus 132 ~v~v~d~~~~~~~~~~i~~------~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~ 204 (361)
T 2oiz_A 132 SIGIVDVAKGDYVEDVTAA------AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-F 204 (361)
T ss_dssp EEEEEETTTTEEEEEEGGG------TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-C
T ss_pred eEEEEECCCCcEEEEEecC------CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-E
Confidence 99999864 4433220111 111224455543 4555566665544432212211 110 000101121 1
Q ss_pred EEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----c--------c----cCCCceEEEECCCCcEEEEeec-------
Q 003205 181 AVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----K--------V----DDTLSQKMAVSPNGNFVACFTH------- 236 (839)
Q Consensus 181 ~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~--------~----~~~~i~~ia~Spng~~iA~~~~------- 236 (839)
..+++++...++.+.+++|++++..+.. . . .......++|||+|+.+...+.
T Consensus 205 ----~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~ 280 (361)
T 2oiz_A 205 ----IAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT 280 (361)
T ss_dssp ----SCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred ----EEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence 1235578788888888999999876421 0 0 0122335899999887766554
Q ss_pred ----CCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCCceEeccCCCeEEeecCCceEEEc
Q 003205 237 ----DGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILS 312 (839)
Q Consensus 237 ----~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~~~l~~E~DGvRIit 312 (839)
++++++|+..-.+.+.++..+. |. .+.|++|+..+.++--+.|+||.
T Consensus 281 ~~~~~~~v~viD~~t~~~v~~i~~~~---p~--------------------------~ia~spdg~~l~v~n~~~v~v~D 331 (361)
T 2oiz_A 281 HKFPAAEIWVMDTKTKQRVARIPGRD---AL--------------------------SMTIDQQRNLMLTLDGGNVNVYD 331 (361)
T ss_dssp TTCCCSEEEEEETTTTEEEEEEECTT---CC--------------------------EEEEETTTTEEEEECSSCEEEEE
T ss_pred ccCCCceEEEEECCCCcEEEEEecCC---ee--------------------------EEEECCCCCEEEEeCCCeEEEEE
Confidence 3478888765445544443331 33 34445555543333225588888
Q ss_pred cCcc--eeeeccch
Q 003205 313 NSSM--EFLQRVPA 324 (839)
Q Consensus 313 ~~~~--~~l~~Vp~ 324 (839)
.... +.+.+++.
T Consensus 332 ~~t~~l~~~~~i~~ 345 (361)
T 2oiz_A 332 ISQPEPKLLRTIEG 345 (361)
T ss_dssp CSSSSCEEEEEETT
T ss_pred CCCCcceeeEEecc
Confidence 8777 88877643
No 185
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.30 E-value=1.7e-05 Score=95.00 Aligned_cols=185 Identities=9% Similarity=0.043 Sum_probs=113.8
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCcee---EEEecCCCCCeEEEeecCCCe-EEEEEeCCe-
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLIS---ETVWKNPGGRLIGMSWSEDQT-LICVVQDGT- 109 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~---ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGt- 109 (839)
...+++||+|..||...++ .++.+.+|++|+..|.... .+.+ ....++.|||||+ |+.++.|++
T Consensus 123 ~~~~~~SPDG~~la~~~~~-------~G~~~~~i~v~dl~tg~~~~~~~~~~----~~~~~~~wspDg~~l~~~~~d~~~ 191 (695)
T 2bkl_A 123 LGTWAVSWDGKKVAFAQKP-------NAADEAVLHVIDVDSGEWSKVDVIEG----GKYATPKWTPDSKGFYYEWLPTDP 191 (695)
T ss_dssp EEEEEECTTSSEEEEEEEE-------TTCSCCEEEEEETTTCCBCSSCCBSC----CTTCCCEECTTSSEEEEEECCCCT
T ss_pred EEEEEECCCCCEEEEEECC-------CCCceEEEEEEECCCCCCcCCcccCc----ccccceEEecCCCEEEEEEecCCC
Confidence 4478999999999998753 1234689999997654432 2222 2226789999997 677777776
Q ss_pred ------------EEEEeCCCCc----cccCC-CCCccccccCeEEEEEECCeEEEEe--cCC----eEEEEecCCCceEE
Q 003205 110 ------------VYRYNIHAEL----IEPNA-SMGKECFEENVVECVFWGNGVVCVT--EAN----RYFCMADFATMKVC 166 (839)
Q Consensus 110 ------------v~l~~~~G~~----~~~~~-g~~~~~~~~~V~~~~~~~~G~v~~t--~~~----~~~~v~~~~~~~~~ 166 (839)
|++|++.+.. ..+.. ++ ...+..+.++++|..++. .+. .+|.+ +..+...+
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~-----~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~-~~~~~~~~ 265 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD-----PTTFLQSDLSRDGKYLFVYILRGWSENDVYWK-RPGEKDFR 265 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC-----TTCEEEEEECTTSCCEEEEEEETTTEEEEEEE-CTTCSSCE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCC-----CEEEEEEEECCCCCEEEEEEeCCCCceEEEEE-cCCCCceE
Confidence 9999876433 11111 11 245778899999954443 233 56665 33333344
Q ss_pred EcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe----CCeEEEEecCCc-----c---ccc-CCCceEEEECCCCcEEEE
Q 003205 167 ELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT----DAGILMLDEDGV-----Q---KVD-DTLSQKMAVSPNGNFVAC 233 (839)
Q Consensus 167 ~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~----d~tv~l~~~~~~-----~---~~~-~~~i~~ia~Spng~~iA~ 233 (839)
.|.. .....+..+. ++|+ +++.+. ++.|++|+.++. . ..+ ...+..++++ ++.+++.
T Consensus 266 ~l~~----~~~~~~~~~~----~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~ 335 (695)
T 2bkl_A 266 LLVK----GVGAKYEVHA----WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLE 335 (695)
T ss_dssp EEEE----CSSCCEEEEE----ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEE
T ss_pred Eeec----CCCceEEEEe----cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEE
Confidence 4432 1112233322 3777 555554 478999998642 2 112 3457788998 7788999
Q ss_pred eecCCeEEEEecC
Q 003205 234 FTHDGRLVVNNTN 246 (839)
Q Consensus 234 ~~~~g~i~i~ssd 246 (839)
...+|+..||.-+
T Consensus 336 ~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 336 YLKDATSEVRVAT 348 (695)
T ss_dssp EEETTEEEEEEEE
T ss_pred EEECCEEEEEEEe
Confidence 9999875555433
No 186
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.29 E-value=0.0003 Score=73.44 Aligned_cols=187 Identities=10% Similarity=0.035 Sum_probs=115.5
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEE-eCCeEEEEe
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVV-QDGTVYRYN 114 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~-~dGtv~l~~ 114 (839)
..+++.|+|...+... ..+.|..|+.+|+. ..+........+.++.+++++.|.++. .++.+.+|+
T Consensus 60 ~~i~~~~~g~l~v~~~------------~~~~i~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d 126 (299)
T 2z2n_A 60 MCLTISSDGEVWFTEN------------AANKIGRITKKGII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRIT 126 (299)
T ss_dssp EEEEECTTSCEEEEET------------TTTEEEEECTTSCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred eeEEECCCCCEEEeCC------------CCCeEEEECCCCcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEEC
Confidence 3556666665444432 35789999988763 444432212579999999999986655 578899999
Q ss_pred CCCCccccCCCCCccccccCeEEEEEECCeEEEEec--CCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCc
Q 003205 115 IHAELIEPNASMGKECFEENVVECVFWGNGVVCVTE--ANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGS 192 (839)
Q Consensus 115 ~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~--~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~ 192 (839)
..|+...+..... ...+..+.+.++|.+.++. ++.++.++. . .....+..+.....|.+.+ + +++|.
T Consensus 127 ~~g~~~~~~~~~~----~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~-g~~~~~~~~~~~~~~~~i~-~----~~~g~ 195 (299)
T 2z2n_A 127 DDGKIREYELPNK----GSYPSFITLGSDNALWFTENQNNAIGRITE-S-GDITEFKIPTPASGPVGIT-K----GNDDA 195 (299)
T ss_dssp TTCCEEEEECSST----TCCEEEEEECTTSCEEEEETTTTEEEEECT-T-CCEEEEECSSTTCCEEEEE-E----CTTSS
T ss_pred CCCCEEEecCCCC----CCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C-CcEEEeeCCCCCCcceeEE-E----CCCCC
Confidence 8888755443211 2346777777788777765 356766654 3 2333332111112233332 2 33777
Q ss_pred EEEEEEeCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 193 VEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 193 ~~v~~s~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
..+....++.|+.++.++.. ......+..|+++|+|+..+....++.|..++.+
T Consensus 196 l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 196 LWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp EEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred EEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 44433337889999986543 1233567899999999866554467788888764
No 187
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.23 E-value=7.2e-05 Score=77.36 Aligned_cols=186 Identities=11% Similarity=0.049 Sum_probs=116.3
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEE-EeCCeEEEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICV-VQDGTVYRY 113 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v-~~dGtv~l~ 113 (839)
...++++|+|...+.. ..+.|.+|+.+|..+..+.... ...+.++.+++++.+.++ ..+|.|.+|
T Consensus 69 p~~i~~~~~g~l~v~~-------------~~~~i~~~d~~~~~~~~~~~~~-~~~p~~i~~~~~g~l~v~~~~~~~i~~~ 134 (270)
T 1rwi_B 69 PQGLAVDGAGTVYVTD-------------FNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKL 134 (270)
T ss_dssp CCCEEECTTCCEEEEE-------------TTTEEEEECTTCSCCEECCCCS-CSSEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred cceeEECCCCCEEEEc-------------CCCEEEEEeCCCceEeeeecCC-cCCCcceEECCCCCEEEEECCCCEEEEE
Confidence 3467788877744332 2578999999998877665433 257899999999997655 457889999
Q ss_pred eCCCCcccc-CCCCCccccccCeEEEEEECCeEEEEecC--CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCC
Q 003205 114 NIHAELIEP-NASMGKECFEENVVECVFWGNGVVCVTEA--NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMT 190 (839)
Q Consensus 114 ~~~G~~~~~-~~g~~~~~~~~~V~~~~~~~~G~v~~t~~--~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~ 190 (839)
+..+..... .... ...+..+.+.++|.++++.. +.++.++ ..+..........+ ..|.+.+ + +++
T Consensus 135 ~~~~~~~~~~~~~~-----~~~p~~i~~~~~g~l~v~~~~~~~i~~~~-~~~~~~~~~~~~~~-~~p~~i~-~----d~~ 202 (270)
T 1rwi_B 135 AAGSKTQTVLPFTG-----LNDPDGVAVDNSGNVYVTDTDNNRVVKLE-AESNNQVVLPFTDI-TAPWGIA-V----DEA 202 (270)
T ss_dssp CTTCCSCEECCCCS-----CCSCCCEEECTTCCEEEEEGGGTEEEEEC-TTTCCEEECCCSSC-CSEEEEE-E----CTT
T ss_pred ECCCceeEeecccc-----CCCceeEEEeCCCCEEEEECCCCEEEEEe-cCCCceEeecccCC-CCceEEE-E----CCC
Confidence 653322211 1111 12345567777887776653 4565554 33333322221111 2233332 3 337
Q ss_pred CcEEEEEEeCCeEEEEecCCcc----c-ccCCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 191 GSVEVLIGTDAGILMLDEDGVQ----K-VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 191 ~~~~v~~s~d~tv~l~~~~~~~----~-~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
|...+.-..++.|+.|+.++.. . ........|+++|+|+..++-..+++|.+++.+
T Consensus 203 g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 203 GTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp CCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred CCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence 7544444447899999988754 1 122457899999999987777788999999765
No 188
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.20 E-value=3.5e-05 Score=83.00 Aligned_cols=171 Identities=9% Similarity=0.074 Sum_probs=98.1
Q ss_pred CCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeC---Ce--EEEEeCC
Q 003205 43 FGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQD---GT--VYRYNIH 116 (839)
Q Consensus 43 ~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~d---Gt--v~l~~~~ 116 (839)
+|..||......... ....+..|.+|+..|.....+ +.+..+.|||||+ |+.+..+ |. +.+|++.
T Consensus 23 dG~~i~~~~~~~~~~---~~~~~~~l~~~d~~~~~~~~l------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~ 93 (347)
T 2gop_A 23 KGELVAYVLTKANLK---DNKYENTIVIENLKNNARRFI------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLE 93 (347)
T ss_dssp ETTEEEEEEEEEETT---TTEEEEEEEEEETTTCCEEEE------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETT
T ss_pred CCcEEEEEEeecCcc---cCCccceEEEEeCCCCceEEc------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECC
Confidence 899999875321100 112367899999887665555 3467889999997 5666654 45 5555765
Q ss_pred CC-ccccCCCCCccccccCeEEEEEECCeEEEEecC-----------------------------CeEEEEecCCCceE-
Q 003205 117 AE-LIEPNASMGKECFEENVVECVFWGNGVVCVTEA-----------------------------NRYFCMADFATMKV- 165 (839)
Q Consensus 117 G~-~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~-----------------------------~~~~~v~~~~~~~~- 165 (839)
|. ..+... . .. +..+.++++|..++... .++| +.+..+...
T Consensus 94 ~g~~~~l~~-~-----~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-~~d~~~~~~~ 165 (347)
T 2gop_A 94 TLSSKKILE-A-----KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFW-IFDTESEEVI 165 (347)
T ss_dssp TTEEEEEEE-E-----SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEE-EEETTTTEEE
T ss_pred CCceEEEEc-C-----CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEE-EEECCCCeEE
Confidence 43 333222 1 22 77788888875443321 2344 344544444
Q ss_pred EEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeC---------CeEEEEecCCcc---cccCCCceEEEECCCCcEEEE
Q 003205 166 CELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTD---------AGILMLDEDGVQ---KVDDTLSQKMAVSPNGNFVAC 233 (839)
Q Consensus 166 ~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d---------~tv~l~~~~~~~---~~~~~~i~~ia~Spng~~iA~ 233 (839)
..+.. + . +..+.+|||| ..+..+.+ ..|+.++ ++.. ..+ ..+.. +||||+.||+
T Consensus 166 ~~l~~-~-----~---~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~-~~~~~--~spdg~~l~~ 231 (347)
T 2gop_A 166 EEFEK-P-----R---FSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFEK-VSFYA--VDSDGERILL 231 (347)
T ss_dssp EEEEE-E-----T---TCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEEE-ESEEE--EEECSSCEEE
T ss_pred eeecC-C-----C---cccccCCCCe-EEEEEecccccccccccccEEEeC-CCceEEeccC-cceee--ECCCCCEEEE
Confidence 44432 1 1 1222466799 44444332 2577788 5443 222 44443 4999999998
Q ss_pred eecC--------CeEEEEe
Q 003205 234 FTHD--------GRLVVNN 244 (839)
Q Consensus 234 ~~~~--------g~i~i~s 244 (839)
.+.+ +.|++|+
T Consensus 232 ~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 232 YGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp EECCSSSCCCSSCEEEEEC
T ss_pred EEccccCCccccceEEEEC
Confidence 8754 3688887
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.18 E-value=7.1e-05 Score=80.25 Aligned_cols=168 Identities=14% Similarity=0.103 Sum_probs=105.5
Q ss_pred CCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEE-EEEeCCeEEEEeCC-CCccccCCCCCccccccCeEEEEEE
Q 003205 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLI-CVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFW 141 (839)
Q Consensus 64 ~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv-~v~~dGtv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~ 141 (839)
.+..++.| .|+.+..+..+. ..+.++.|+++++|. +...+|.|.+|+.. |++..+...+ ...|..+.+.
T Consensus 25 ~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-----~~~~~~i~~~ 95 (333)
T 2dg1_A 25 SESELQTI--TAEPWLEISKKG--LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSH-----KANPAAIKIH 95 (333)
T ss_dssp CGGGSCEE--ECEEEEEEESSC--CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECS-----SSSEEEEEEC
T ss_pred ecccCccc--ccceeEEEeccC--ccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCC-----CCCcceEEEC
Confidence 35677778 677777787665 778999999999986 45678899999975 4544433233 3467888888
Q ss_pred CCeEEEEecC------CeEEEEecCCCceEE-EcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe------CCeEEEEec
Q 003205 142 GNGVVCVTEA------NRYFCMADFATMKVC-ELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT------DAGILMLDE 208 (839)
Q Consensus 142 ~~G~v~~t~~------~~~~~v~~~~~~~~~-~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~------d~tv~l~~~ 208 (839)
++|.++++.. +.++.++ .++.... .+.... .....+.+ .++|+|...+.... .+.|+.++.
T Consensus 96 ~dg~l~v~~~~~~~~~~~i~~~d-~~~~~~~~~~~~~~--~~~~~~~i---~~d~~g~l~v~~~~~~~~~~~~~l~~~~~ 169 (333)
T 2dg1_A 96 KDGRLFVCYLGDFKSTGGIFAAT-ENGDNLQDIIEDLS--TAYCIDDM---VFDSKGGFYFTDFRGYSTNPLGGVYYVSP 169 (333)
T ss_dssp TTSCEEEEECTTSSSCCEEEEEC-TTSCSCEEEECSSS--SCCCEEEE---EECTTSCEEEEECCCBTTBCCEEEEEECT
T ss_pred CCCcEEEEeCCCCCCCceEEEEe-CCCCEEEEEEccCc--cCCcccce---EECCCCCEEEEeccccccCCCceEEEEeC
Confidence 8887666643 2465543 4433333 222111 11122222 34458876554432 357888887
Q ss_pred CCcc----cccCCCceEEEECCCCcEEEEe-ecCCeEEEEecC
Q 003205 209 DGVQ----KVDDTLSQKMAVSPNGNFVACF-THDGRLVVNNTN 246 (839)
Q Consensus 209 ~~~~----~~~~~~i~~ia~Spng~~iA~~-~~~g~i~i~ssd 246 (839)
++.. .........+++||+|+.+... +.++.|++|+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~ 212 (333)
T 2dg1_A 170 DFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALE 212 (333)
T ss_dssp TSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred CCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEec
Confidence 6532 1223346889999999866554 457789999864
No 190
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.17 E-value=0.00018 Score=76.30 Aligned_cols=208 Identities=8% Similarity=0.122 Sum_probs=129.0
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCC
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIH 116 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~ 116 (839)
..+++|.++-+.... ...+.|..|+..+..+..+.. . +.+.++.|++++.|++.. ++.|.+|+..
T Consensus 17 gp~w~~~~~~l~~~d-----------~~~~~i~~~d~~~~~~~~~~~-~--~~~~~i~~~~dG~l~v~~-~~~l~~~d~~ 81 (297)
T 3g4e_A 17 SPVWEEVSNSLLFVD-----------IPAKKVCRWDSFTKQVQRVTM-D--APVSSVALRQSGGYVATI-GTKFCALNWK 81 (297)
T ss_dssp EEEEETTTTEEEEEE-----------TTTTEEEEEETTTCCEEEEEC-S--SCEEEEEEBTTSSEEEEE-TTEEEEEETT
T ss_pred CCeEECCCCEEEEEE-----------CCCCEEEEEECCCCcEEEEeC-C--CceEEEEECCCCCEEEEE-CCeEEEEECC
Confidence 556777666555553 246889999998877665542 3 789999999999987766 5568889875
Q ss_pred -CCccccCCCC-CccccccCeEEEEEECCeEEEEecC-------------CeEEEEecCCCceEEEcCCCCCCCCCceEE
Q 003205 117 -AELIEPNASM-GKECFEENVVECVFWGNGVVCVTEA-------------NRYFCMADFATMKVCELARPEVEELPHCVA 181 (839)
Q Consensus 117 -G~~~~~~~g~-~~~~~~~~V~~~~~~~~G~v~~t~~-------------~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~ 181 (839)
|++..+.... ... ...+.++.+.++|.++++.. +.+|.++. .+ ....+.. .. ..|..
T Consensus 82 ~g~~~~~~~~~~~~~--~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~-~g-~~~~~~~-~~-~~png-- 153 (297)
T 3g4e_A 82 EQSAVVLATVDNDKK--NNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP-DH-HVKKYFD-QV-DISNG-- 153 (297)
T ss_dssp TTEEEEEEECCTTCS--SEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT-TS-CEEEEEE-EE-SBEEE--
T ss_pred CCcEEEEEecCCCCC--CCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC-CC-CEEEEee-cc-ccccc--
Confidence 5553221111 001 34467888888887766531 24555542 11 1222211 01 11222
Q ss_pred EeCCCCCCCCcEEEEEEe-CCeEEEEecC---Ccc---------cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCC
Q 003205 182 VIEPKYTMTGSVEVLIGT-DAGILMLDED---GVQ---------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFS 248 (839)
Q Consensus 182 vi~~~~S~~~~~~v~~s~-d~tv~l~~~~---~~~---------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~ 248 (839)
..+||||+.+..+.. +++|+.++.+ |.. ....+....|+++++|.+.+.....+.|.+++.+-+
T Consensus 154 ---i~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG 230 (297)
T 3g4e_A 154 ---LDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG 230 (297)
T ss_dssp ---EEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred ---eEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence 235669987765554 7889999853 321 112245678999999987777666788999988756
Q ss_pred CccccccCCCCCCCCceeeecCc
Q 003205 249 SPVIDESCESALPPEQIAWCGMD 271 (839)
Q Consensus 249 ~~l~e~~~~~~~~p~~~~WcG~d 271 (839)
+.+.++... ...|..++|.|.|
T Consensus 231 ~~~~~i~~p-~~~~t~~~f~g~d 252 (297)
T 3g4e_A 231 KRLQTVKLP-VDKTTSCCFGGKN 252 (297)
T ss_dssp CEEEEEECS-SSBEEEEEEESGG
T ss_pred eEEEEEECC-CCCceEEEEeCCC
Confidence 666666544 2356777777654
No 191
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.17 E-value=0.00015 Score=78.13 Aligned_cols=205 Identities=12% Similarity=0.088 Sum_probs=127.0
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeC-
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNI- 115 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~- 115 (839)
..+++|+++.+..+. ...+.|..|+..|..+..+.. . +.+.++.|++++.+++++.+| +.+|+.
T Consensus 53 gp~~~~~~~~l~~~d-----------~~~~~i~~~d~~~~~~~~~~~-~--~~v~~i~~~~dg~l~v~~~~g-l~~~d~~ 117 (326)
T 2ghs_A 53 GPTFDPASGTAWWFN-----------ILERELHELHLASGRKTVHAL-P--FMGSALAKISDSKQLIASDDG-LFLRDTA 117 (326)
T ss_dssp EEEEETTTTEEEEEE-----------GGGTEEEEEETTTTEEEEEEC-S--SCEEEEEEEETTEEEEEETTE-EEEEETT
T ss_pred CCeEeCCCCEEEEEE-----------CCCCEEEEEECCCCcEEEEEC-C--CcceEEEEeCCCeEEEEECCC-EEEEECC
Confidence 567888877666654 135789999998877666543 3 689999999999988777666 778886
Q ss_pred CCCccccCC-CCCccccccCeEEEEEECCeEEEEecC--------CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCC
Q 003205 116 HAELIEPNA-SMGKECFEENVVECVFWGNGVVCVTEA--------NRYFCMADFATMKVCELARPEVEELPHCVAVIEPK 186 (839)
Q Consensus 116 ~G~~~~~~~-g~~~~~~~~~V~~~~~~~~G~v~~t~~--------~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~ 186 (839)
.|++..+.. ..... ...+.++.+.++|.++++.. +.+|.++ . .....+.. .. ..+.. ..
T Consensus 118 ~g~~~~~~~~~~~~~--~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~-g~~~~~~~-~~-~~~~~-----i~ 185 (326)
T 2ghs_A 118 TGVLTLHAELESDLP--GNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--K-GKVTKLFA-DI-SIPNS-----IC 185 (326)
T ss_dssp TCCEEEEECSSTTCT--TEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--T-TEEEEEEE-EE-SSEEE-----EE
T ss_pred CCcEEEEeeCCCCCC--CCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--C-CcEEEeeC-CC-cccCC-----eE
Confidence 466533211 11000 23577888888887766642 4677776 2 33333321 01 11221 23
Q ss_pred CCCCCcEEEEEEe-CCeEEEEecC---C-cc-------c--ccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccc
Q 003205 187 YTMTGSVEVLIGT-DAGILMLDED---G-VQ-------K--VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVI 252 (839)
Q Consensus 187 ~S~~~~~~v~~s~-d~tv~l~~~~---~-~~-------~--~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~ 252 (839)
+||||+.+.+++. +++|++++.+ | .. . ...+....++++++|.+.+....++.|.+++.+ ++.+.
T Consensus 186 ~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~ 264 (326)
T 2ghs_A 186 FSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIA 264 (326)
T ss_dssp ECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEE
T ss_pred EcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEE
Confidence 5669987766654 6889999864 4 21 0 112345789999999876655556788888775 55554
Q ss_pred cccCCCCCCCCceeeecC
Q 003205 253 DESCESALPPEQIAWCGM 270 (839)
Q Consensus 253 e~~~~~~~~p~~~~WcG~ 270 (839)
++... ...|..++|.|.
T Consensus 265 ~i~~~-~~~~~~~af~g~ 281 (326)
T 2ghs_A 265 RYEVP-GKQTTCPAFIGP 281 (326)
T ss_dssp EEECS-CSBEEEEEEEST
T ss_pred EEECC-CCCcEEEEEecC
Confidence 44433 123555666543
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.16 E-value=0.00022 Score=77.02 Aligned_cols=243 Identities=12% Similarity=0.076 Sum_probs=143.4
Q ss_pred CCceEEEEcCC-CCceeEEEe----cCCCCCeEEEeecCCCeE-EEEEeCCeEEEEeC-CCCccccCCCCCccccccCeE
Q 003205 64 ALRKLRIFNSA-GVLISETVW----KNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVV 136 (839)
Q Consensus 64 ~~~~I~iy~~~-G~ll~ti~~----~~~~~~I~~~~fs~de~L-v~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~ 136 (839)
.+++|.+|+.. |+...++.. ........++.+. ++++ ++...+|+|.+||. .|+...... . .....
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~-----~~~p~ 87 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-G-----FTSPR 87 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-C-----CSSEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-C-----CCCCc
Confidence 47899999976 666555521 1111346778885 5666 56666899999986 477643221 1 23456
Q ss_pred EEEEECCeEEEEec--CCeEEEEecCCCceEE-EcCCCCC---CCCCceEEEeCCCCCCCCcEEEEEE--eCCeEEEEec
Q 003205 137 ECVFWGNGVVCVTE--ANRYFCMADFATMKVC-ELARPEV---EELPHCVAVIEPKYTMTGSVEVLIG--TDAGILMLDE 208 (839)
Q Consensus 137 ~~~~~~~G~v~~t~--~~~~~~v~~~~~~~~~-~l~~~~~---~~~~~~w~vi~~~~S~~~~~~v~~s--~d~tv~l~~~ 208 (839)
.+.+.++|.++++. ++.++.++ ..+.... .++.... ...|...++ ++..+..++ .+++|.++|.
T Consensus 88 ~i~~~~~g~lyv~~~~~~~v~~iD-~~t~~~~~~i~~g~~~~~~~~p~~i~~-------~~~~lyv~~~~~~~~v~viD~ 159 (328)
T 3dsm_A 88 YIHFLSDEKAYVTQIWDYRIFIIN-PKTYEITGYIECPDMDMESGSTEQMVQ-------YGKYVYVNCWSYQNRILKIDT 159 (328)
T ss_dssp EEEEEETTEEEEEEBSCSEEEEEE-TTTTEEEEEEECTTCCTTTCBCCCEEE-------ETTEEEEEECTTCCEEEEEET
T ss_pred EEEEeCCCeEEEEECCCCeEEEEE-CCCCeEEEEEEcCCccccCCCcceEEE-------ECCEEEEEcCCCCCEEEEEEC
Confidence 77787788877776 45566554 4433322 3321110 014665554 334444344 3789999997
Q ss_pred CCcc-----cccCCCceEEEECCCCcEEEEeecC----------CeEEEEecCCCCccccccCCCCCCCCceeeecCceE
Q 003205 209 DGVQ-----KVDDTLSQKMAVSPNGNFVACFTHD----------GRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSV 273 (839)
Q Consensus 209 ~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~----------g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~v 273 (839)
.... .... ....|+++|+|++.+....+ +.|.+++.+-.+....+.......|..|+|..++..
T Consensus 160 ~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~ 238 (328)
T 3dsm_A 160 ETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDT 238 (328)
T ss_dssp TTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCE
T ss_pred CCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCE
Confidence 7433 2222 34689999999977665554 789999876555544454432236888888865444
Q ss_pred EEEecCEEEEEcCCC----------------CceEeccC-CCeEEee----cCCc-eEEEccCcceeeeccc
Q 003205 274 LLYWNDMLVMVAPQA----------------EPVQYFYD-EPLVLIP----ECDG-VRILSNSSMEFLQRVP 323 (839)
Q Consensus 274 v~~~~~~l~lig~~~----------------~~v~f~~~-~~~~l~~----E~DG-vRIit~~~~~~l~~Vp 323 (839)
+..-+..+..+-+.. ..+.+.++ +.+++.. .-+| |.+|+.+ .+++++++
T Consensus 239 lyv~~~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 239 LYWINNDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEEESSSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred EEEEccEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 433333333332211 23555553 4455554 3445 9999998 88888874
No 193
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.15 E-value=2.6e-05 Score=82.36 Aligned_cols=178 Identities=11% Similarity=0.029 Sum_probs=121.9
Q ss_pred cCCCeEEEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCceEEEcCCCCCC
Q 003205 96 SEDQTLICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVE 174 (839)
Q Consensus 96 s~de~Lv~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~ 174 (839)
+|+.-+++.+.|+.|.+||. .|+..-....+. ...+.++.+.++|.++++.++.++.++. ++...+.+..+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~----~~~~~~~~~~pdG~ilvs~~~~V~~~d~-~G~~~W~~~~~--- 74 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK----GWECNSVAATKAGEILFSYSKGAKMITR-DGRELWNIAAP--- 74 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCT----TCCCCEEEECTTSCEEEECBSEEEEECT-TSCEEEEEECC---
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc----cCCCcCeEECCCCCEEEeCCCCEEEECC-CCCEEEEEcCC---
Confidence 34555678888999999998 999843332221 1356788899999988877777777665 55556666431
Q ss_pred CCCceEEEeCCCCCCCCcEEEEEEe-CCeEEEEecCCcc----cc------cCCCceEEEECCCCcEEEEeecCCeEEEE
Q 003205 175 ELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDEDGVQ----KV------DDTLSQKMAVSPNGNFVACFTHDGRLVVN 243 (839)
Q Consensus 175 ~~~~~w~vi~~~~S~~~~~~v~~s~-d~tv~l~~~~~~~----~~------~~~~i~~ia~Spng~~iA~~~~~g~i~i~ 243 (839)
....... ..++++|++++..+. ++.++.++.+|.. .. +..+...++++|+|+++++.+.++++..+
T Consensus 75 ~~~~~~~---~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~ 151 (276)
T 3no2_A 75 AGCEMQT---ARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREI 151 (276)
T ss_dssp TTCEEEE---EEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEE
T ss_pred CCccccc---cEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEE
Confidence 1112222 235569999888777 7889999988864 11 11245678899999999999999999999
Q ss_pred ecCCCCccccccCCCCCCCCceeeecCceEE-EEec-CEEEEEcCC
Q 003205 244 NTNFSSPVIDESCESALPPEQIAWCGMDSVL-LYWN-DMLVMVAPQ 287 (839)
Q Consensus 244 ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv-~~~~-~~l~lig~~ 287 (839)
+.+ ++.+.++... ..|.......++.++ .... ..+..+.|.
T Consensus 152 d~~-G~~~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 152 APN-GQLLNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp CTT-SCEEEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred CCC-CCEEEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence 998 8888888764 256666655444333 3333 367777777
No 194
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.14 E-value=0.0011 Score=69.11 Aligned_cols=171 Identities=10% Similarity=0.054 Sum_probs=106.1
Q ss_pred CCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEe-CCeEEEEeCCCCccccCCCCCccccccCeEEEEEEC
Q 003205 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQ-DGTVYRYNIHAELIEPNASMGKECFEENVVECVFWG 142 (839)
Q Consensus 64 ~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~-dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~ 142 (839)
..+.|..|+.+|+. ..+........+.++.+++++.+.++.. ++.|..|+..|++..+..+.. ...+..+.+.+
T Consensus 81 ~~~~v~~~d~~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~----~~~~~~i~~d~ 155 (300)
T 2qc5_A 81 GANKIGKLSKKGGF-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNK----GSYPAFITLGS 155 (300)
T ss_dssp TTTEEEEECTTSCE-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSST----TCCEEEEEECT
T ss_pred CCCeEEEECCCCCe-EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCC----CCCceeEEECC
Confidence 35789999988775 4454432125799999999999866654 788999998888765443321 33567777777
Q ss_pred CeEEEEec--CCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----ccc
Q 003205 143 NGVVCVTE--ANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVD 215 (839)
Q Consensus 143 ~G~v~~t~--~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~~ 215 (839)
+|.+.++. ++.++.++. .+ ....+..+.....|.+.+ + +++|.+.+.-..++.|+.++.++.. ...
T Consensus 156 ~g~l~v~~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~i~-~----d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~ 228 (300)
T 2qc5_A 156 DNALWFTENQNNSIGRITN-TG-KLEEYPLPTNAAAPVGIT-S----GNDGALWFVEIMGNKIGRITTTGEISEYDIPTP 228 (300)
T ss_dssp TSSEEEEETTTTEEEEECT-TC-CEEEEECSSTTCCEEEEE-E----CTTSSEEEEETTTTEEEEECTTCCEEEEECSST
T ss_pred CCCEEEEecCCCeEEEECC-CC-cEEEeeCCCCCCCcceEE-E----CCCCCEEEEccCCCEEEEEcCCCcEEEEECCCC
Confidence 77766665 446766654 32 222232111112233332 2 3377654443346789999987653 122
Q ss_pred CCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 216 DTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 216 ~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
......|+++|+|+..+.-..++.|..++.+
T Consensus 229 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 229 NARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp TCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred CCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 3457899999999865554456788888653
No 195
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.12 E-value=0.00077 Score=74.33 Aligned_cols=160 Identities=9% Similarity=-0.064 Sum_probs=89.9
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCC-----CCCeEEEeecCCCeE-EEEEe--C
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNP-----GGRLIGMSWSEDQTL-ICVVQ--D 107 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~-----~~~I~~~~fs~de~L-v~v~~--d 107 (839)
.+++||+|..+.+......- ...+..+++|.+|+. .++.+.+|..... ......+.|||||+. ++... +
T Consensus 70 ~i~~spDg~~lyv~n~~~~~--~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~ 147 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSR--IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG 147 (373)
T ss_pred CeEECCCCCEEEEEeccccc--cccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCC
Confidence 88999999999988520000 000013578999997 6888888875410 023568999999985 44443 5
Q ss_pred CeEEEEeCC-CCccccCCCCCccccccCeEEEEEEC---CeEEEEecCCeEEEEecCCCceEEEcCC-CC-CCCCCceEE
Q 003205 108 GTVYRYNIH-AELIEPNASMGKECFEENVVECVFWG---NGVVCVTEANRYFCMADFATMKVCELAR-PE-VEELPHCVA 181 (839)
Q Consensus 108 Gtv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~---~G~v~~t~~~~~~~v~~~~~~~~~~l~~-~~-~~~~~~~w~ 181 (839)
++|.++| . |+......+. ... +.+.+ .+.+..+.++.+..+.. .+........ +. .+..|.
T Consensus 148 ~~v~viD-~t~~~~~~~i~~-----~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~--- 214 (373)
T 2mad_H 148 PAVGLVV-QGGSSDDQLLSS-----PTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNL--- 214 (373)
T ss_pred CeEEEEE-CCCCEEeEEcCC-----Cce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcce---
Confidence 7899999 5 3443220211 111 22322 33444555666666655 3222111110 00 111121
Q ss_pred EeCCCCCCCCcEEEEEEeCCeEEEEecCCc
Q 003205 182 VIEPKYTMTGSVEVLIGTDAGILMLDEDGV 211 (839)
Q Consensus 182 vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~ 211 (839)
...+.|++++...++.+.++.++++|..+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~v~vid~~~~ 244 (373)
T 2mad_H 215 LTQPAQANKSGRIVWPVYSGKILQADISAA 244 (373)
T ss_pred eecceeEecCCEEEEEcCCceEEEEeccCC
Confidence 234567778877777778889999988643
No 196
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.09 E-value=8e-05 Score=82.43 Aligned_cols=166 Identities=13% Similarity=0.094 Sum_probs=110.6
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC----------C--CceeEEEecCCCCCeEEEeecCCCeEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA----------G--VLISETVWKNPGGRLIGMSWSEDQTLI 102 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~----------G--~ll~ti~~~~~~~~I~~~~fs~de~Lv 102 (839)
.+.+|+|+.+|.+|.++. ..+.+|+.+ + ++...+. .. + |..++| ||..+
T Consensus 40 ~nlLais~~~gll~a~~~-------------~~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp--~-V~~l~f--d~~~L 100 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASG-------------SKAVVGELQLLRDHITSDSTPLTFKWEKE-IP--D-VIFVCF--HGDQV 100 (388)
T ss_dssp CBCEEEETTTTEEEEEET-------------TEEEEEEHHHHHHHHHSSSCCCCCSEEEE-CT--T-EEEEEE--ETTEE
T ss_pred ccEEEEcCCCCEEEEeCC-------------CEEEEEEhhHhhhhhccccccccceEEee-CC--C-eeEEEE--CCCEE
Confidence 679999999999999872 345556522 1 1222333 33 6 999999 77655
Q ss_pred EEEeCCeEEEEeCCCCc-cccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCceEEEcCCCCCCCCCceEE
Q 003205 103 CVVQDGTVYRYNIHAEL-IEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVA 181 (839)
Q Consensus 103 ~v~~dGtv~l~~~~G~~-~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~ 181 (839)
.+..+|.|++|++.... ......+ +..|.+++.++..+++++.+|.++ ++++.+.....+. ...+|-
T Consensus 101 ~v~~~~~l~v~dv~sl~~~~~~~~~-----~~~v~~i~~~~p~~av~~~dG~L~-v~dl~~~~~~~~~-----~~Vs~v- 168 (388)
T 1xip_A 101 LVSTRNALYSLDLEELSEFRTVTSF-----EKPVFQLKNVNNTLVILNSVNDLS-ALDLRTKSTKQLA-----QNVTSF- 168 (388)
T ss_dssp EEEESSEEEEEESSSTTCEEEEEEC-----SSCEEEEEECSSEEEEEETTSEEE-EEETTTCCEEEEE-----ESEEEE-
T ss_pred EEEcCCcEEEEEchhhhccCcccee-----ecceeeEEecCCCEEEEECCCCEE-EEEccCCcccccc-----CCceEE-
Confidence 44499999999864322 1111122 445778888876788889999887 4456543333322 122322
Q ss_pred EeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-------------c---ccCCCceEEEECCCCcEEEEeecC
Q 003205 182 VIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-------------K---VDDTLSQKMAVSPNGNFVACFTHD 237 (839)
Q Consensus 182 vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-------------~---~~~~~i~~ia~Spng~~iA~~~~~ 237 (839)
.+||+| .+++..||++.+|+.++.. . .+...|.+|.+++|+++++.|+..
T Consensus 169 ----~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~ 234 (388)
T 1xip_A 169 ----DVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNV 234 (388)
T ss_dssp ----EECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECC
T ss_pred ----EEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCC
Confidence 456688 6778889999999877533 0 146779999999999999998863
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.05 E-value=7.9e-05 Score=89.97 Aligned_cols=188 Identities=14% Similarity=0.134 Sum_probs=110.0
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCe------
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGT------ 109 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGt------ 109 (839)
..+++||+|..||...++. ++...+|++|+..|........+. ..+.++.||||..|+.+..|++
T Consensus 166 ~~~~~SPDG~~la~~~~~~-------G~e~~~i~v~dl~tg~~~~~~~~~--~~~~~~~wspD~~l~~~~~~~~~~~~~~ 236 (741)
T 1yr2_A 166 DAWAASDDGRLLAYSVQDG-------GSDWRTVKFVGVADGKPLADELKW--VKFSGLAWLGNDALLYSRFAEPKEGQAF 236 (741)
T ss_dssp EEEEECTTSSEEEEEEEET-------TCSEEEEEEEETTTCCEEEEEEEE--EESCCCEESTTSEEEEEECCCC------
T ss_pred EeEEECCCCCEEEEEEcCC-------CCceEEEEEEECCCCCCCCccCCC--ceeccEEEECCCEEEEEEecCccccccc
Confidence 4679999999999987531 112368999998665544433222 2335788999933666666654
Q ss_pred --------EEEEeCCCCcc--ccCCCCCccccccCeEEEEEECCeEEE--EecCC-----eEEEEecCCCc--e-EEEcC
Q 003205 110 --------VYRYNIHAELI--EPNASMGKECFEENVVECVFWGNGVVC--VTEAN-----RYFCMADFATM--K-VCELA 169 (839)
Q Consensus 110 --------v~l~~~~G~~~--~~~~g~~~~~~~~~V~~~~~~~~G~v~--~t~~~-----~~~~v~~~~~~--~-~~~l~ 169 (839)
|++|++.+... ......... ...+..+.++++|..+ ...+. .+|.+ +.+++ . .+.|.
T Consensus 237 ~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~-d~~~~~~~~~~~l~ 313 (741)
T 1yr2_A 237 QALNYNQTVWLHRLGTPQSADQPVFATPEL--PKRGHGASVSSDGRWVVITSSEGTDPVNTVHVA-RVTNGKIGPVTALI 313 (741)
T ss_dssp --CCCCCEEEEEETTSCGGGCEEEECCTTC--TTCEEEEEECTTSCEEEEEEECTTCSCCEEEEE-EEETTEECCCEEEE
T ss_pred ccCCCCCEEEEEECCCCchhCEEEeccCCC--CeEEEEEEECCCCCEEEEEEEccCCCcceEEEE-ECCCCCCcccEEec
Confidence 77788743321 111111000 2247788999999433 33222 45544 34433 3 44443
Q ss_pred CCCCCCCCceEEEeCCCCCCCCcEEEEEEeC----CeEEEEecCCc--c-----cccCCCceEEEECCCCcEEEEeecCC
Q 003205 170 RPEVEELPHCVAVIEPKYTMTGSVEVLIGTD----AGILMLDEDGV--Q-----KVDDTLSQKMAVSPNGNFVACFTHDG 238 (839)
Q Consensus 170 ~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d----~tv~l~~~~~~--~-----~~~~~~i~~ia~Spng~~iA~~~~~g 238 (839)
.. ....+..+ +|+|+.+++.+.+ +.|++|+.++. . ..+...+..++++ ++.+++....+|
T Consensus 314 ~~----~~~~~~~~----~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg 384 (741)
T 1yr2_A 314 PD----LKAQWDFV----DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDA 384 (741)
T ss_dssp CS----SSSCEEEE----EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETT
T ss_pred CC----CCceEEEE----eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECC
Confidence 21 11112222 3489999888874 45999998752 2 2233446677777 667888888888
Q ss_pred eEEEEe
Q 003205 239 RLVVNN 244 (839)
Q Consensus 239 ~i~i~s 244 (839)
...||.
T Consensus 385 ~~~l~~ 390 (741)
T 1yr2_A 385 KSQVLA 390 (741)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 744443
No 198
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.02 E-value=0.0014 Score=69.14 Aligned_cols=198 Identities=10% Similarity=0.055 Sum_probs=114.9
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEe-----cCCCCCeEEEeecCC-CeEEEEEeCCe
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVW-----KNPGGRLIGMSWSED-QTLICVVQDGT 109 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~-----~~~~~~I~~~~fs~d-e~Lv~v~~dGt 109 (839)
..++++|+|...++.. .. ...+..++.|..|+..+..+..+.. +. +.+.++.|+++ +.|.++..++.
T Consensus 21 ~~~~~~~~g~l~~~~~-~~----~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~--~~~~~i~~~~~~g~l~v~~~~~~ 93 (314)
T 1pjx_A 21 EGPVFDKNGDFYIVAP-EV----EVNGKPAGEILRIDLKTGKKTVICKPEVNGYG--GIPAGCQCDRDANQLFVADMRLG 93 (314)
T ss_dssp EEEEECTTSCEEEEET-TC----EETTEECCEEEEECTTTCCEEEEECCEETTEE--CCEEEEEECSSSSEEEEEETTTE
T ss_pred cCceECCCCCEEEEEe-cc----ccCCCCCCEEEEEeCCCCcEEEEEecccCCCC--CCCceEEEecCCCcEEEEECCCC
Confidence 3678888887666510 00 0001136789999954333444443 33 67899999999 99887776667
Q ss_pred EEEEeCCCCcccc-CCCCCccccccCeEEEEEECCeEEEEecC-----------------CeEEEEecCCCceEEEcCCC
Q 003205 110 VYRYNIHAELIEP-NASMGKECFEENVVECVFWGNGVVCVTEA-----------------NRYFCMADFATMKVCELARP 171 (839)
Q Consensus 110 v~l~~~~G~~~~~-~~g~~~~~~~~~V~~~~~~~~G~v~~t~~-----------------~~~~~v~~~~~~~~~~l~~~ 171 (839)
+.+|+..|++..+ ....... ....+.++.+.++|.++++.. +.++.++. + .....+..
T Consensus 94 l~~~d~~g~~~~~~~~~~~~~-~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-g~~~~~~~- 169 (314)
T 1pjx_A 94 LLVVQTDGTFEEIAKKDSEGR-RMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-D-GQMIQVDT- 169 (314)
T ss_dssp EEEEETTSCEEECCSBCTTSC-BCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-T-SCEEEEEE-
T ss_pred EEEEeCCCCEEEEEeccCCCc-cccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECC-C-CCEEEecc-
Confidence 8889887887543 2111000 023467788888887777654 34665542 2 22222211
Q ss_pred CCCCCCceEEEeCCCCCCCCcEEEEEE-eCCeEEEEecC--Ccc---------cccC-CCceEEEECCCCcEEEEeecCC
Q 003205 172 EVEELPHCVAVIEPKYTMTGSVEVLIG-TDAGILMLDED--GVQ---------KVDD-TLSQKMAVSPNGNFVACFTHDG 238 (839)
Q Consensus 172 ~~~~~~~~w~vi~~~~S~~~~~~v~~s-~d~tv~l~~~~--~~~---------~~~~-~~i~~ia~Spng~~iA~~~~~g 238 (839)
.. ..|...++ ...-.++|+.+.... .++.|++|+.+ +.. ..+. +....|+++|+|++.+....++
T Consensus 170 ~~-~~~~~i~~-~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~ 247 (314)
T 1pjx_A 170 AF-QFPNGIAV-RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp EE-SSEEEEEE-EECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred CC-CCcceEEE-ecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence 01 12332222 100014776555554 47889999854 321 1111 4567899999998777766678
Q ss_pred eEEEEecC
Q 003205 239 RLVVNNTN 246 (839)
Q Consensus 239 ~i~i~ssd 246 (839)
.|.+|+.+
T Consensus 248 ~i~~~d~~ 255 (314)
T 1pjx_A 248 HIEVFGPD 255 (314)
T ss_dssp EEEEECTT
T ss_pred EEEEEcCC
Confidence 88888765
No 199
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=97.93 E-value=0.00021 Score=85.67 Aligned_cols=219 Identities=12% Similarity=-0.014 Sum_probs=118.9
Q ss_pred EcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEE----EecCC-CCCeEEEeecCCCeE-EEEEe-CC----
Q 003205 40 CAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISET----VWKNP-GGRLIGMSWSEDQTL-ICVVQ-DG---- 108 (839)
Q Consensus 40 ~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti----~~~~~-~~~I~~~~fs~de~L-v~v~~-dG---- 108 (839)
.+|+|+.++..+++. +...+.|.+.+..|.....+ ..... ...+.++.|||||+. +.+++ +|
T Consensus 79 p~~dG~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~ 151 (710)
T 2xdw_A 79 HFKKGKRYFYFYNTG-------LQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWV 151 (710)
T ss_dssp CEEETTEEEEEEECS-------SCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCE
T ss_pred CEEECCEEEEEEEcC-------CceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceE
Confidence 359999999987531 11234666666544322222 11110 024788999999985 44444 44
Q ss_pred eEEEEeCCC-CccccCCCCCccccccCeEEEEEECCeEEEEe--cCCe----------------EEEEecCCCce--EEE
Q 003205 109 TVYRYNIHA-ELIEPNASMGKECFEENVVECVFWGNGVVCVT--EANR----------------YFCMADFATMK--VCE 167 (839)
Q Consensus 109 tv~l~~~~G-~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t--~~~~----------------~~~v~~~~~~~--~~~ 167 (839)
+|++|++.+ +......+ ...+..+.+++||..++. .+.. +|. +++.++. ...
T Consensus 152 ~i~v~d~~tg~~~~~~~~------~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~l~t~~~~~~~ 224 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDVLE------RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYY-HVLGTDQSEDIL 224 (710)
T ss_dssp EEEEEETTTTEEEEEEEE------EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEE-EETTSCGGGCEE
T ss_pred EEEEEECCCCCCCccccc------CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEE-EECCCCcccceE
Confidence 899999754 44432222 122455677777754433 2221 443 4444332 122
Q ss_pred cCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe-----CCeEEEEecCC------c---c---cccCCCceEEEECCCCcE
Q 003205 168 LARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-----DAGILMLDEDG------V---Q---KVDDTLSQKMAVSPNGNF 230 (839)
Q Consensus 168 l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~-----d~tv~l~~~~~------~---~---~~~~~~i~~ia~Spng~~ 230 (839)
+...+ ..+. | +..+.+||||+.+++.+. ++.|++|+.++ . . ..+...+. -.+||+|+.
T Consensus 225 v~~~~--~~~~-~-~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~ 299 (710)
T 2xdw_A 225 CAEFP--DEPK-W-MGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY-DYVTNEGTV 299 (710)
T ss_dssp EECCT--TCTT-C-EEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTE
T ss_pred EeccC--CCCe-E-EEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEE-EEEeccCCE
Confidence 22100 1122 2 233467889999998876 56899999764 2 1 22233333 368999999
Q ss_pred EEEeecCC----eEEEEecCCCC--ccccccCCCC-CCCCceeeecCceEEEEe
Q 003205 231 VACFTHDG----RLVVNNTNFSS--PVIDESCESA-LPPEQIAWCGMDSVLLYW 277 (839)
Q Consensus 231 iA~~~~~g----~i~i~ssd~~~--~l~e~~~~~~-~~p~~~~WcG~d~vv~~~ 277 (839)
+++.+..+ .|++|+.+-.. ...++..+.. .....+.|..++.+++..
T Consensus 300 l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~ 353 (710)
T 2xdw_A 300 FTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353 (710)
T ss_dssp EEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred EEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEE
Confidence 99887643 58888765332 1122222211 234467787445555443
No 200
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.92 E-value=0.0004 Score=83.10 Aligned_cols=186 Identities=12% Similarity=0.139 Sum_probs=108.3
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC-CCceeE-EEecCCCCCeEEEeecCCCe-EEEEEeCCe---
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISE-TVWKNPGGRLIGMSWSEDQT-LICVVQDGT--- 109 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G~ll~t-i~~~~~~~~I~~~~fs~de~-Lv~v~~dGt--- 109 (839)
..+++||+|..||...++. ++...+|++|+.. |+.+.. +.+. +..++.|+ |++ |+.++.+++
T Consensus 132 ~~~~~SpDg~~lAy~~~~~-------G~~~~~i~v~dl~tg~~~~~~~~~~----k~~~~~Ws-Dg~~l~y~~~~~~~~~ 199 (693)
T 3iuj_A 132 DQLSFSRDGRILAYSLSLA-------GSDWREIHLMDVESKQPLETPLKDV----KFSGISWL-GNEGFFYSSYDKPDGS 199 (693)
T ss_dssp EEEEECTTSSEEEEEEECS-------SCCEEEEEEEETTTCSEEEEEEEEE----ESCCCEEE-TTTEEEEEESSCCC--
T ss_pred EEEEECCCCCEEEEEEecC-------CCceEEEEEEECCCCCCCccccCCc----eeccEEEe-CCCEEEEEEecCcccc
Confidence 3569999999999987532 2335799999975 454432 3332 23467799 886 677777744
Q ss_pred ----------EEEEeCCCCcc--ccCCCCCc-cccccCeEEEEEECCeEEEE-ec-C----CeEEEEecCCCc--eEEEc
Q 003205 110 ----------VYRYNIHAELI--EPNASMGK-ECFEENVVECVFWGNGVVCV-TE-A----NRYFCMADFATM--KVCEL 168 (839)
Q Consensus 110 ----------v~l~~~~G~~~--~~~~g~~~-~~~~~~V~~~~~~~~G~v~~-t~-~----~~~~~v~~~~~~--~~~~l 168 (839)
|++|++..... +....... . ...+..+.++++|..++ +. + .++|.+ +.+++ ..+++
T Consensus 200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~--~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~-d~~~~~~~~~~l 276 (693)
T 3iuj_A 200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ--HHRYVGATVTEDDRFLLISAANSTSGNRLYVK-DLSQENAPLLTV 276 (693)
T ss_dssp -----CCCCEEEEEETTSCGGGCEEEESCSGGG--CCSEEEEEECTTSCEEEEEEESSSSCCEEEEE-ETTSTTCCCEEE
T ss_pred cccccCCCcEEEEEECCCCcccceEEEecCCCC--CeEEEEEEEcCCCCEEEEEEccCCCCcEEEEE-ECCCCCCceEEE
Confidence 88887643321 11111100 0 22367788899886543 22 1 255554 34433 34444
Q ss_pred CCCCCCCCCceEEEeCCCCCCCCcEEEEEEe----CCeEEEEecCCcc-------cccCCCceEEEECCCCcEEEEeec-
Q 003205 169 ARPEVEELPHCVAVIEPKYTMTGSVEVLIGT----DAGILMLDEDGVQ-------KVDDTLSQKMAVSPNGNFVACFTH- 236 (839)
Q Consensus 169 ~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~----d~tv~l~~~~~~~-------~~~~~~i~~ia~Spng~~iA~~~~- 236 (839)
.. .....+.. ++++|+.+++.+. .+.|+.++.++.. ..+...+. .+||+|++|++...
T Consensus 277 ~~----~~~~~~~~----~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~ 346 (693)
T 3iuj_A 277 QG----DLDADVSL----VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMV 346 (693)
T ss_dssp EC----SSSSCEEE----EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEE
T ss_pred eC----CCCceEEE----EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEE
Confidence 32 11112222 3347787777765 3578999887522 22333343 99999998877664
Q ss_pred CC--eEEEEecC
Q 003205 237 DG--RLVVNNTN 246 (839)
Q Consensus 237 ~g--~i~i~ssd 246 (839)
+| .|++++.+
T Consensus 347 ~g~~~l~~~d~~ 358 (693)
T 3iuj_A 347 DATARVEQFDYE 358 (693)
T ss_dssp TTEEEEEEECTT
T ss_pred CCeeEEEEEECC
Confidence 44 58888765
No 201
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.88 E-value=0.00045 Score=74.48 Aligned_cols=184 Identities=11% Similarity=0.126 Sum_probs=112.1
Q ss_pred CCceEEEEcC-CCCceeEEEecCC---CCCeEEEeecCCCeEEEEE--eCCeEEEEeCC-CCccc-cCCCCCccccccCe
Q 003205 64 ALRKLRIFNS-AGVLISETVWKNP---GGRLIGMSWSEDQTLICVV--QDGTVYRYNIH-AELIE-PNASMGKECFEENV 135 (839)
Q Consensus 64 ~~~~I~iy~~-~G~ll~ti~~~~~---~~~I~~~~fs~de~Lv~v~--~dGtv~l~~~~-G~~~~-~~~g~~~~~~~~~V 135 (839)
.++.|.+|+. +|+++.++..... ......|.+ .++.|.++. .+++|.+||+. |+... ...+. ..
T Consensus 103 ~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-------~p 174 (328)
T 3dsm_A 103 WDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI-------QP 174 (328)
T ss_dssp SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS-------CB
T ss_pred CCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC-------Cc
Confidence 4789999996 5666777775320 014566777 577776665 38899999864 55532 22222 22
Q ss_pred EEEEEECCeEEEEecCC------------eEEEEecCCCceEE-EcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCe
Q 003205 136 VECVFWGNGVVCVTEAN------------RYFCMADFATMKVC-ELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAG 202 (839)
Q Consensus 136 ~~~~~~~~G~v~~t~~~------------~~~~v~~~~~~~~~-~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~t 202 (839)
..+.+.++|.++++..+ .++.++- .+.... .+.- +.+..|... .+||+++.+..+.. +
T Consensus 175 ~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~-~t~~v~~~~~~-~~g~~p~~l-----a~~~d~~~lyv~~~--~ 245 (328)
T 3dsm_A 175 TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDA-ETFTVEKQFKF-KLGDWPSEV-----QLNGTRDTLYWINN--D 245 (328)
T ss_dssp CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEET-TTTEEEEEEEC-CTTCCCEEE-----EECTTSCEEEEESS--S
T ss_pred cceEEcCCCCEEEEECCCccCCccccCCceEEEEEC-CCCeEEEEEec-CCCCCceeE-----EEecCCCEEEEEcc--E
Confidence 34567788887777643 4665553 323222 2221 111234443 23447887655433 8
Q ss_pred EEEEecCCcc----c-cc--CCCceEEEECC-CCcEEEEe----ecCCeEEEEecCCCCccccccCCCCCCCCceee
Q 003205 203 ILMLDEDGVQ----K-VD--DTLSQKMAVSP-NGNFVACF----THDGRLVVNNTNFSSPVIDESCESALPPEQIAW 267 (839)
Q Consensus 203 v~l~~~~~~~----~-~~--~~~i~~ia~Sp-ng~~iA~~----~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~W 267 (839)
|+++|..+.. . .. ......|+++| +|...++- ..+|+|.+|+.+ ++.+.++.... .|..+++
T Consensus 246 v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~--~P~~~~~ 319 (328)
T 3dsm_A 246 IWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGI--IPGAFCW 319 (328)
T ss_dssp EEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEE--SEEEEEE
T ss_pred EEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEecc--CcceEEE
Confidence 9999986433 1 11 24567899999 55555554 467899999998 88887776543 5666665
No 202
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.88 E-value=0.00079 Score=74.22 Aligned_cols=244 Identities=14% Similarity=0.029 Sum_probs=137.8
Q ss_pred EEEEcCCCCeEEEEecC-chhhhhhcccCCceEEEEcC-CCCceeEEEecC-C----CCCeEEEeecCCCeEE-EEEe--
Q 003205 37 KVACAPFGGPIAVIRDD-SKIVQLYAESALRKLRIFNS-AGVLISETVWKN-P----GGRLIGMSWSEDQTLI-CVVQ-- 106 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~-~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~-~----~~~I~~~~fs~de~Lv-~v~~-- 106 (839)
.+++||+|..+.+...- ++.. .+...++|.+|+. .++.+.+|.... . ......+.|||||+.+ +...
T Consensus 82 ~va~spDG~~lyVan~~~~r~~---~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~ 158 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIA---RGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP 158 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETT---EEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS
T ss_pred cEEECCCCCEEEEEcccccccc---cCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCC
Confidence 49999999988776310 0000 0012578999995 677889987642 0 0246789999999854 4432
Q ss_pred CCeEEEEeC-CCCccccC-CCCCccccccCeEEEEEECC---eEEEEecCCeEEEEecCCCceEEEcCCCCCC-CCCceE
Q 003205 107 DGTVYRYNI-HAELIEPN-ASMGKECFEENVVECVFWGN---GVVCVTEANRYFCMADFATMKVCELARPEVE-ELPHCV 180 (839)
Q Consensus 107 dGtv~l~~~-~G~~~~~~-~g~~~~~~~~~V~~~~~~~~---G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~-~~~~~w 180 (839)
+++|.++|. .++..... .+. . .-++|. .++.++.++.+.++..-...+...-.....+ ....
T Consensus 159 ~~~VsVID~~t~~vv~tI~v~g--------~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~-- 226 (386)
T 3sjl_D 159 APAVGVVDLEGKAFKRMLDVPD--------C--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEF-- 226 (386)
T ss_dssp SCEEEEEETTTTEEEEEEECCS--------E--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSC--
T ss_pred CCeEEEEECCCCcEEEEEECCC--------c--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccccc--
Confidence 689999986 45543322 211 1 123443 3466677777766654321221110011110 1111
Q ss_pred EEeCCCCC-CCCcEEEEEEeCCeEEEEecCCcc-----cc------------cCCCceEEEECCCCcEEEEeecC-----
Q 003205 181 AVIEPKYT-MTGSVEVLIGTDAGILMLDEDGVQ-----KV------------DDTLSQKMAVSPNGNFVACFTHD----- 237 (839)
Q Consensus 181 ~vi~~~~S-~~~~~~v~~s~d~tv~l~~~~~~~-----~~------------~~~~i~~ia~Spng~~iA~~~~~----- 237 (839)
....+.|. ++| ..++++.+++|+++|..+.. +. ..+.+..++++|+|+.+-....+
T Consensus 227 ~~~~~~~~~~dG-~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~ 305 (386)
T 3sjl_D 227 LINHPAYSQKAG-RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR 305 (386)
T ss_dssp BCSCCEEETTTT-EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC
T ss_pred ccccceeEcCCC-cEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccc
Confidence 01223332 355 45568889999999987542 11 13346678889988876665431
Q ss_pred -----CeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCCceEeccCCC-e-EEeecCCc-eE
Q 003205 238 -----GRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEP-L-VLIPECDG-VR 309 (839)
Q Consensus 238 -----g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~-~-~l~~E~DG-vR 309 (839)
++||+++..-.+.+.++.. |....++.++.|+. . +.....+| |-
T Consensus 306 hk~~~~~V~viD~~t~kv~~~i~v----------------------------g~~~~~lavs~D~~~~ly~tn~~~~~Vs 357 (386)
T 3sjl_D 306 HKTASRFVVVLDAKTGERLAKFEM----------------------------GHEIDSINVSQDEKPLLYALSTGDKTLY 357 (386)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEE----------------------------EEEECEEEECSSSSCEEEEEETTTTEEE
T ss_pred cCCCCCEEEEEECCCCeEEEEEEC----------------------------CCCcceEEECCCCCeEEEEEcCCCCeEE
Confidence 3577776654444433322 22233566666764 3 33345566 88
Q ss_pred EEccCcceeeeccch
Q 003205 310 ILSNSSMEFLQRVPA 324 (839)
Q Consensus 310 Iit~~~~~~l~~Vp~ 324 (839)
||.....+.+++++.
T Consensus 358 ViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 358 IHDAESGEELRSVNQ 372 (386)
T ss_dssp EEETTTCCEEEEECC
T ss_pred EEECCCCcEEEEecC
Confidence 888888888888764
No 203
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.83 E-value=0.00072 Score=75.52 Aligned_cols=184 Identities=13% Similarity=0.058 Sum_probs=111.3
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeE-EEEEeCC--eEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDG--TVY 111 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dG--tv~ 111 (839)
-..++++|+|.+.++-. ..+.|+.|+..+..+.++.... .... ++|+++++. +++..++ .|.
T Consensus 133 P~~la~d~~g~lyv~d~------------~~~~I~~id~~~g~~~~~~~~~--~~~~-ia~~~~g~~l~~~d~~~~~~I~ 197 (409)
T 3hrp_A 133 MWGIAAVGNNTVLAYQR------------DDPRVRLISVDDNKVTTVHPGF--KGGK-PAVTKDKQRVYSIGWEGTHTVY 197 (409)
T ss_dssp EEEEEECSTTEEEEEET------------TTTEEEEEETTTTEEEEEEETC--CBCB-CEECTTSSEEEEEBSSTTCEEE
T ss_pred ceEEEEeCCCCEEEEec------------CCCcEEEEECCCCEEEEeeccC--CCCc-eeEecCCCcEEEEecCCCceEE
Confidence 34788888888555543 4689999999987777775544 3344 899999975 5555555 788
Q ss_pred EEeCCCCccccCC----C-CCccccccCeEEEEEEC-CeEEEEecC-CeEEEEecCCCceEEEc----CCCCCCCCCc-e
Q 003205 112 RYNIHAELIEPNA----S-MGKECFEENVVECVFWG-NGVVCVTEA-NRYFCMADFATMKVCEL----ARPEVEELPH-C 179 (839)
Q Consensus 112 l~~~~G~~~~~~~----g-~~~~~~~~~V~~~~~~~-~G~v~~t~~-~~~~~v~~~~~~~~~~l----~~~~~~~~~~-~ 179 (839)
+|+..+......+ . . ...+..+.+.+ +|.++++.. +.++.++ .++.....+ .....+..|. .
T Consensus 198 ~~d~~~~~~~~~~g~~~~~~-----~~~p~~iav~p~~g~lyv~d~~~~I~~~d-~~~~~~~~~~~~~~~g~~~~~P~~~ 271 (409)
T 3hrp_A 198 VYMKASGWAPTRIGQLGSTF-----SGKIGAVALDETEEWLYFVDSNKNFGRFN-VKTQEVTLIKQLELSGSLGTNPGPY 271 (409)
T ss_dssp EEEGGGTTCEEEEEECCTTS-----CSCCCBCEECTTSSEEEEECTTCEEEEEE-TTTCCEEEEEECCCCSCCCCSSCCE
T ss_pred EEEcCCCceeEEeeeccchh-----cCCcEEEEEeCCCCeEEEEECCCcEEEEE-CCCCCEEEEecccccCCCCCCcccc
Confidence 8877654421111 1 1 23456677888 787777654 3466554 333333333 1111111122 3
Q ss_pred EEEeCCCCCCCCc-EEEEEEeCCeEEEEecCCcc---ccc---------------CCCceEEEECCCCcEEEEee-cCCe
Q 003205 180 VAVIEPKYTMTGS-VEVLIGTDAGILMLDEDGVQ---KVD---------------DTLSQKMAVSPNGNFVACFT-HDGR 239 (839)
Q Consensus 180 w~vi~~~~S~~~~-~~v~~s~d~tv~l~~~~~~~---~~~---------------~~~i~~ia~Spng~~iA~~~-~~g~ 239 (839)
. .++|++. +.+.-..++.|+.|+.++.. ... -..-..|+++|+|++.++-+ .+++
T Consensus 272 i-----a~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~ 346 (409)
T 3hrp_A 272 L-----IYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC 346 (409)
T ss_dssp E-----EEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE
T ss_pred E-----EEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE
Confidence 2 2344544 44433347899999988743 111 12357899999998766666 6778
Q ss_pred EEEEe
Q 003205 240 LVVNN 244 (839)
Q Consensus 240 i~i~s 244 (839)
|+.++
T Consensus 347 I~~~~ 351 (409)
T 3hrp_A 347 LRKLD 351 (409)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98887
No 204
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=97.81 E-value=0.0014 Score=69.66 Aligned_cols=203 Identities=9% Similarity=0.065 Sum_probs=122.6
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEe-CCeEEEEeC
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQ-DGTVYRYNI 115 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~-dGtv~l~~~ 115 (839)
..+++|+|+.+.... ...+.|..|+.+|+ +..+.... +.+.++.|+++|.|+++.. ++.|.+|+.
T Consensus 49 gp~~~~~g~~l~~~d-----------~~~~~i~~~~~~g~-~~~~~~~~--~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 49 GPAWWEAQRTLVWSD-----------LVGRRVLGWREDGT-VDVLLDAT--AFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp EEEEEGGGTEEEEEE-----------TTTTEEEEEETTSC-EEEEEESC--SCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred CCeEeCCCCEEEEEE-----------CCCCEEEEEeCCCC-EEEEeCCC--CccceeeECCCCCEEEEECCCCEEEEECC
Confidence 578889998555554 14678999999887 45665555 7899999999999876654 478999998
Q ss_pred CCCccccCCCCCccccccCeEEEEEECCeEEEEec-------------------CCeEEEEecCCCceEEEcCCCCCCCC
Q 003205 116 HAELIEPNASMGKECFEENVVECVFWGNGVVCVTE-------------------ANRYFCMADFATMKVCELARPEVEEL 176 (839)
Q Consensus 116 ~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~-------------------~~~~~~v~~~~~~~~~~l~~~~~~~~ 176 (839)
.|++.......... ....+.++.+.++|-+.+|. .+.+|.++. .+.....+. .+ ..
T Consensus 115 ~g~~~~~~~~~~~~-~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~-~~g~~~~~~--~~-~~ 189 (305)
T 3dr2_A 115 DGQAHLLVGRYAGK-RLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP-DGSPLQRMA--DL-DH 189 (305)
T ss_dssp TSCEEEEECEETTE-ECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS-SSCCCEEEE--EE-SS
T ss_pred CCCEEEEEeccCCC-ccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcC-CCCcEEEEe--cC-CC
Confidence 88864322111000 01235567778888888862 134555542 112222221 11 12
Q ss_pred CceEEEeCCCCCCCCcEEEEEEeC------CeEEEEecCCcc--------cccCCCceEEEECCCCcEEEEeecCCeEEE
Q 003205 177 PHCVAVIEPKYTMTGSVEVLIGTD------AGILMLDEDGVQ--------KVDDTLSQKMAVSPNGNFVACFTHDGRLVV 242 (839)
Q Consensus 177 ~~~w~vi~~~~S~~~~~~v~~s~d------~tv~l~~~~~~~--------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i 242 (839)
|... .|||||+.+..+... +.|+.++.++.. ....+....|+++++|++.+. +.+ .|++
T Consensus 190 p~gl-----~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~ 262 (305)
T 3dr2_A 190 PNGL-----AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCV 262 (305)
T ss_dssp EEEE-----EECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEE
T ss_pred Ccce-----EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEE
Confidence 2222 456799987777665 689998866321 112333467899999984333 333 4888
Q ss_pred EecCCCCccccccCCCCCCCCceeee
Q 003205 243 NNTNFSSPVIDESCESALPPEQIAWC 268 (839)
Q Consensus 243 ~ssd~~~~l~e~~~~~~~~p~~~~Wc 268 (839)
++.+ ++.+..+.... .|..++|.
T Consensus 263 ~~~~-g~~~~~~~~~~--~~~~~~f~ 285 (305)
T 3dr2_A 263 FDSD-GQLLGHIPTPG--TASNCTFD 285 (305)
T ss_dssp ECTT-SCEEEEEECSS--CCCEEEEC
T ss_pred ECCC-CCEEEEEECCC--ceeEEEEe
Confidence 8876 55554554432 35555554
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.80 E-value=0.0007 Score=75.86 Aligned_cols=242 Identities=10% Similarity=-0.004 Sum_probs=136.3
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCC-----CCCeEEEeecCCCeEE-EEEe--C
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNP-----GGRLIGMSWSEDQTLI-CVVQ--D 107 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~-----~~~I~~~~fs~de~Lv-~v~~--d 107 (839)
.+++||+|..+.+....... ...+...+.|.+++. +++.+.+|..... ......+.||||++.+ +... +
T Consensus 122 gia~SpDgk~lyVan~~~~~--~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~ 199 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFER--IARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPA 199 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEE--TTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSS
T ss_pred ceEECCCCCEEEEEeccccc--cccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCC
Confidence 89999999988887410000 000012578999995 7888999986410 0245688999999854 4442 5
Q ss_pred CeEEEEeCC-CCcc-ccCCCCCccccccCeEEEEEECC---eEEEEecCCeEEEEecCCCceEE-Ec-CCCCCCCCCceE
Q 003205 108 GTVYRYNIH-AELI-EPNASMGKECFEENVVECVFWGN---GVVCVTEANRYFCMADFATMKVC-EL-ARPEVEELPHCV 180 (839)
Q Consensus 108 Gtv~l~~~~-G~~~-~~~~g~~~~~~~~~V~~~~~~~~---G~v~~t~~~~~~~v~~~~~~~~~-~l-~~~~~~~~~~~w 180 (839)
++|.++|.. ++.. +...+. . ..+.++ .++..+.++++..+.. ...+.. .. .....+..|.
T Consensus 200 ~~VsVID~~t~kvv~~I~v~g--------~--~~~~p~g~~~~v~~~~dG~~~~V~~-~~~~v~~~~~~~~~v~~~p~-- 266 (426)
T 3c75_H 200 PAVGVVDLEGKTFDRMLDVPD--------C--YHIFPASPTVFYMNCRDGSLARVDF-ADGETKVTNTEVFHTEDELL-- 266 (426)
T ss_dssp CEEEEEETTTTEEEEEEECCS--------E--EEEEEEETTEEEEEETTSSEEEEEC-CTTCCEEEECCCCSCTTSCB--
T ss_pred CeEEEEECCCCeEEEEEEcCC--------c--eeeccCCCcEEEEEcCCCCEEEEEC-CCCcEEEEeeeeeccCCCce--
Confidence 789999864 4443 222221 1 223333 3455666777776765 322221 10 0001112221
Q ss_pred EEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc--cc---------------cCCCceEEEECCCCcEEEEeec-------
Q 003205 181 AVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--KV---------------DDTLSQKMAVSPNGNFVACFTH------- 236 (839)
Q Consensus 181 ~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~--~~---------------~~~~i~~ia~Spng~~iA~~~~------- 236 (839)
.+.+.|++++....+.+.+++|+++|..+.. .. .......+++||+|+.+-..+.
T Consensus 267 -~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gth 345 (426)
T 3c75_H 267 -INHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKH 345 (426)
T ss_dssp -CSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCT
T ss_pred -eeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccc
Confidence 1233567788888888888899999986432 00 1122345899999886555442
Q ss_pred ---CCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCCCceEeccCCC-eE-EeecCCc-eEE
Q 003205 237 ---DGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEP-LV-LIPECDG-VRI 310 (839)
Q Consensus 237 ---~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~~~v~f~~~~~-~~-l~~E~DG-vRI 310 (839)
++++++++..-.+.+.++... .....+.|..|+. .+ ...+.+| |-|
T Consensus 346 k~~s~~VsVID~~T~kvv~~I~vg----------------------------~~P~gia~spDg~~~lyv~n~~s~~VsV 397 (426)
T 3c75_H 346 KAASRFVVVLNAETGERINKIELG----------------------------HEIDSINVSQDAEPLLYALSAGTQTLHI 397 (426)
T ss_dssp TSCEEEEEEEETTTCCEEEEEEEE----------------------------EEECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred cCCCCEEEEEECCCCeEEEEEECC----------------------------CCcCeEEEccCCCEEEEEEcCCCCeEEE
Confidence 246888876645555443322 1233444555554 33 2333344 777
Q ss_pred EccCcceeeecc
Q 003205 311 LSNSSMEFLQRV 322 (839)
Q Consensus 311 it~~~~~~l~~V 322 (839)
|.....+.+.++
T Consensus 398 ID~~t~kvv~tI 409 (426)
T 3c75_H 398 YDAATGEELRSV 409 (426)
T ss_dssp EETTTCCEEEEE
T ss_pred EECCCCCEEEEe
Confidence 777777777665
No 206
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=97.77 E-value=0.00067 Score=74.28 Aligned_cols=206 Identities=12% Similarity=0.093 Sum_probs=116.4
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeE-EEecCCCCCeEEEeecCCC--eEEEEEeCCeE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISE-TVWKNPGGRLIGMSWSEDQ--TLICVVQDGTV 110 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~t-i~~~~~~~~I~~~~fs~de--~Lv~v~~dGtv 110 (839)
-..++++|+|..+.+..- ...++|.+|+. .|+.+.+ |... .-..+.+.|++ .+++++.||++
T Consensus 110 p~~i~~spdg~~l~v~n~----------~~~~~v~v~d~~~~~~~~~~i~~~----~~~~v~~~p~~~~~~~~~~~dg~~ 175 (361)
T 2oiz_A 110 DGLFRQTTDGKFIVLQNA----------SPATSIGIVDVAKGDYVEDVTAAA----GCWSVIPQPNRPRSFMTICGDGGL 175 (361)
T ss_dssp GGGEEECTTSSEEEEEEE----------SSSEEEEEEETTTTEEEEEEGGGT----TEEEEEECTTSSSEEEEEETTSSE
T ss_pred cceEEECCCCCEEEEECC----------CCCCeEEEEECCCCcEEEEEecCC----CcceeEEcCCCCeeEEEECCCCcE
Confidence 346899999999888741 12588999995 6677777 5532 22335567765 46788899998
Q ss_pred EEEeC--CCCcc-------ccCCCCCccccccCeEEEEEEC--CeEEEEecCCeEEEEecCCCceE-----EEcCC---C
Q 003205 111 YRYNI--HAELI-------EPNASMGKECFEENVVECVFWG--NGVVCVTEANRYFCMADFATMKV-----CELAR---P 171 (839)
Q Consensus 111 ~l~~~--~G~~~-------~~~~g~~~~~~~~~V~~~~~~~--~G~v~~t~~~~~~~v~~~~~~~~-----~~l~~---~ 171 (839)
.+|+. .|+.. .+..+. ..+ .+.+.+ .+.++.+.++.++.++ +..... ..+.. .
T Consensus 176 ~~v~~~~~g~~~~~~~~~~~~~~~~------~~~-~~~~~~~g~~~~~~~~~~~v~v~d-~~~~~~~~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 176 LTINLGEDGKVASQSRSKQMFSVKD------DPI-FIAPALDKDKAHFVSYYGNVYSAD-FSGDEVKVDGPWSLLNDEDK 247 (361)
T ss_dssp EEEEECTTSSEEEEEECCCCSCTTT------SCB-CSCCEECSSEEEEEBTTSEEEEEE-CSSSSCEEEEEEESCCHHHH
T ss_pred EEEEECCCCcEeeeccccceEcCCC------Cce-EEEecccCCEEEEEeCCCeEEEEE-ecCCCceecccccccCcccc
Confidence 88865 35543 111111 111 111122 3455555556655443 321111 11100 0
Q ss_pred CCCCCCceEEEeCCCCCCCCcEEEEEEe-----------CCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEee
Q 003205 172 EVEELPHCVAVIEPKYTMTGSVEVLIGT-----------DAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFT 235 (839)
Q Consensus 172 ~~~~~~~~w~vi~~~~S~~~~~~v~~s~-----------d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~ 235 (839)
..+..|..|.. ..|+|+++.+..+.. +++|.+||....+ ..+. ...|+|||||++++..+
T Consensus 248 ~~~~~p~g~~~--~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n 323 (361)
T 2oiz_A 248 AKNWVPGGYNL--VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLD 323 (361)
T ss_dssp HTTCEECCSSC--EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEEC
T ss_pred ccccccCCeeE--EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeC
Confidence 00001111110 135668877665543 3589999987654 2333 78999999999999888
Q ss_pred cCCeEEEEecCCC--CccccccCCCCCCCCceeee
Q 003205 236 HDGRLVVNNTNFS--SPVIDESCESALPPEQIAWC 268 (839)
Q Consensus 236 ~~g~i~i~ssd~~--~~l~e~~~~~~~~p~~~~Wc 268 (839)
. ++|.||+..-. +.+.++... -..|..|.+.
T Consensus 324 ~-~~v~v~D~~t~~l~~~~~i~~~-G~~P~~~~~~ 356 (361)
T 2oiz_A 324 G-GNVNVYDISQPEPKLLRTIEGA-AEASLQVQFH 356 (361)
T ss_dssp S-SCEEEEECSSSSCEEEEEETTS-CSSEEEEEEC
T ss_pred C-CeEEEEECCCCcceeeEEeccC-CCCcEEEEec
Confidence 7 99999987655 555443211 2245555543
No 207
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=97.76 E-value=0.00031 Score=84.05 Aligned_cols=196 Identities=11% Similarity=0.040 Sum_probs=107.4
Q ss_pred CEEEEcCCCCeEEEEecCchh-hhhhcccCCceEEEEcCCCCc-----eeEEEecCCCCCeEEEeecCCCe-EEEEEeCC
Q 003205 36 NKVACAPFGGPIAVIRDDSKI-VQLYAESALRKLRIFNSAGVL-----ISETVWKNPGGRLIGMSWSEDQT-LICVVQDG 108 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~-~~~~~~~~~~~I~iy~~~G~l-----l~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dG 108 (839)
..+++||+|..|+..+.+... -..........|.+|+..+.. +.+...+. ..+.++.|||||+ |++.+.++
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~--~~~~~~~~SpDG~~l~~~~~~~ 248 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDP--TTFLQSDLSRDGKYLFVYILRG 248 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCT--TCEEEEEECTTSCCEEEEEEET
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCC--EEEEEEEECCCCCEEEEEEeCC
Confidence 578999999999998753210 000000124569999965432 22222222 5789999999998 56666555
Q ss_pred ----eEEEEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecC-----CeEEEEecCCCce---EEEcCCCCCCC
Q 003205 109 ----TVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-----NRYFCMADFATMK---VCELARPEVEE 175 (839)
Q Consensus 109 ----tv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~-----~~~~~v~~~~~~~---~~~l~~~~~~~ 175 (839)
.+++++. .|++..... + ...+......+++ ++++.+ ++++.+ +++++. ...+.. .
T Consensus 249 ~~~~~l~~~~~~~~~~~~l~~-~-----~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~-d~~~~~~~~~~~l~~----~ 316 (695)
T 2bkl_A 249 WSENDVYWKRPGEKDFRLLVK-G-----VGAKYEVHAWKDR-FYVLTDEGAPRQRVFEV-DPAKPARASWKEIVP----E 316 (695)
T ss_dssp TTEEEEEEECTTCSSCEEEEE-C-----SSCCEEEEEETTE-EEEEECTTCTTCEEEEE-BTTBCSGGGCEEEEC----C
T ss_pred CCceEEEEEcCCCCceEEeec-C-----CCceEEEEecCCc-EEEEECCCCCCCEEEEE-eCCCCCccCCeEEec----C
Confidence 5666665 345443332 2 2234443334455 444433 455544 354432 123321 1
Q ss_pred CCceEEEeCCCCCCCCcEEEEEEeCCeEEEE--ecCCcc----ccc-CCCceEEEECCCCcEEEEee----cCCeEEEEe
Q 003205 176 LPHCVAVIEPKYTMTGSVEVLIGTDAGILML--DEDGVQ----KVD-DTLSQKMAVSPNGNFVACFT----HDGRLVVNN 244 (839)
Q Consensus 176 ~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~--~~~~~~----~~~-~~~i~~ia~Spng~~iA~~~----~~g~i~i~s 244 (839)
.+. +.+-...++ ++.+++....|+...+| +.+|.. ..+ .+.+..+++||+|+.+++.. ..+++++|+
T Consensus 317 ~~~-~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d 394 (695)
T 2bkl_A 317 DSS-ASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTS 394 (695)
T ss_dssp CSS-CEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEE
T ss_pred CCC-CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence 111 112112233 55666666678766655 544542 222 55678899999998888433 346799998
Q ss_pred cCC
Q 003205 245 TNF 247 (839)
Q Consensus 245 sd~ 247 (839)
.+-
T Consensus 395 ~~~ 397 (695)
T 2bkl_A 395 VST 397 (695)
T ss_dssp TTT
T ss_pred CCC
Confidence 653
No 208
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.61 E-value=0.016 Score=59.87 Aligned_cols=211 Identities=9% Similarity=-0.055 Sum_probs=121.7
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCC-CeEEEE-EeCCeEEEEe
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSED-QTLICV-VQDGTVYRYN 114 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~d-e~Lv~v-~~dGtv~l~~ 114 (839)
.+++.|.++.|-++. ...+.|..|+.+|..+..+.-.. .....++.++++ +.+.+. ..++.|.+++
T Consensus 40 gi~~d~~~~~ly~~d-----------~~~~~I~~~~~~g~~~~~~~~~~-~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~ 107 (267)
T 1npe_A 40 GLAFDCVDKVVYWTD-----------ISEPSIGRASLHGGEPTTIIRQD-LGSPEGIALDHLGRTIFWTDSQLDRIEVAK 107 (267)
T ss_dssp EEEEETTTTEEEEEE-----------TTTTEEEEEESSSCCCEEEECTT-CCCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEecCCCEEEEEE-----------CCCCEEEEEecCCCCcEEEEECC-CCCccEEEEEecCCeEEEEECCCCEEEEEE
Confidence 445555555554443 24688999999998776654322 257899999986 566443 4567899999
Q ss_pred CCCCccccCCCCCccccccCeEEEEEEC-CeEEEEecC----CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCC
Q 003205 115 IHAELIEPNASMGKECFEENVVECVFWG-NGVVCVTEA----NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTM 189 (839)
Q Consensus 115 ~~G~~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~----~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~ 189 (839)
+.|+..+...... -.....+.+.+ +|.++++.. +.++.+. .++.....+...++ ..|...++ ++
T Consensus 108 ~~g~~~~~~~~~~----~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~-~dg~~~~~~~~~~~-~~P~gia~-----d~ 176 (267)
T 1npe_A 108 MDGTQRRVLFDTG----LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH-MDGTNRRILAQDNL-GLPNGLTF-----DA 176 (267)
T ss_dssp TTSCSCEEEECSS----CSSEEEEEEETTTTEEEEEECCSSSCEEEEEE-TTSCCCEEEECTTC-SCEEEEEE-----ET
T ss_pred cCCCCEEEEEECC----CCCccEEEEeeCCCEEEEEECCCCCcEEEEEe-cCCCCcEEEEECCC-CCCcEEEE-----cC
Confidence 9987643322211 12356778887 677776653 3455443 33322223322122 33554433 33
Q ss_pred CCcEEEEEEe-CCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEee-cCCeEEEEecCCCCccccccCCCCCCC
Q 003205 190 TGSVEVLIGT-DAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFT-HDGRLVVNNTNFSSPVIDESCESALPP 262 (839)
Q Consensus 190 ~~~~~v~~s~-d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~-~~g~i~i~ssd~~~~l~e~~~~~~~~p 262 (839)
+++.+..+.. .+.|+.++.++.. .....| ..|++. +..+-... .++.|++++.+-++.+.++.......|
T Consensus 177 ~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P-~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p 253 (267)
T 1npe_A 177 FSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYP-FAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRL 253 (267)
T ss_dssp TTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSE-EEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCC
T ss_pred CCCEEEEEECCCCEEEEEecCCCceEEEecCCCCc-eEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccccccc
Confidence 6666555554 6789999988653 112223 466654 33433333 456788887765566656654433357
Q ss_pred CceeeecCceE
Q 003205 263 EQIAWCGMDSV 273 (839)
Q Consensus 263 ~~~~WcG~d~v 273 (839)
..+++..+.|.
T Consensus 254 ~gi~~~~~~~~ 264 (267)
T 1npe_A 254 YGITIALSQCP 264 (267)
T ss_dssp CCEEEECSCC-
T ss_pred ceeeecCccCC
Confidence 78877766664
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=97.56 E-value=0.0012 Score=79.58 Aligned_cols=189 Identities=15% Similarity=0.077 Sum_probs=101.0
Q ss_pred EEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC---CCceeEE-EecC--CCC--CeEEEeecCCCeE-EEEEeC-C
Q 003205 39 ACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA---GVLISET-VWKN--PGG--RLIGMSWSEDQTL-ICVVQD-G 108 (839)
Q Consensus 39 a~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~---G~ll~ti-~~~~--~~~--~I~~~~fs~de~L-v~v~~d-G 108 (839)
..+|+|+.++..+++. +...+.|.+.+.. |.....+ ..+. ..+ .+.++.|||||+. +.++++ |
T Consensus 113 ~p~pdG~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G 185 (741)
T 1yr2_A 113 LPQRRGASVFYSWNSG-------LMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGG 185 (741)
T ss_dssp CCEEETTEEEEEEECS-------SCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETT
T ss_pred CCEEECCEEEEEEEcC-------CCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCC
Confidence 4459999999988531 1113455555544 4333332 1110 002 5788999999985 444433 3
Q ss_pred ----eEEEEeCCC-CccccCCCCCccccccCeEEEEEECC-eEEEEecCC--------------eEEEEecCCCce--EE
Q 003205 109 ----TVYRYNIHA-ELIEPNASMGKECFEENVVECVFWGN-GVVCVTEAN--------------RYFCMADFATMK--VC 166 (839)
Q Consensus 109 ----tv~l~~~~G-~~~~~~~g~~~~~~~~~V~~~~~~~~-G~v~~t~~~--------------~~~~v~~~~~~~--~~ 166 (839)
+|++||+.| +...... + ...+..+.++++ ++++.+.+. ++|. +++.++. ..
T Consensus 186 ~e~~~i~v~dl~tg~~~~~~~-~-----~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~-~~lgt~~~~~~ 258 (741)
T 1yr2_A 186 SDWRTVKFVGVADGKPLADEL-K-----WVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWL-HRLGTPQSADQ 258 (741)
T ss_dssp CSEEEEEEEETTTCCEEEEEE-E-----EEESCCCEESTTSEEEEEECCCC--------CCCCCEEEE-EETTSCGGGCE
T ss_pred CceEEEEEEECCCCCCCCccC-C-----CceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEE-EECCCCchhCE
Confidence 599999754 4433211 1 111234455565 333333222 2443 3343322 12
Q ss_pred EcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCC-----eEEEEecCCc----c---cccCCCceEEEECCCCcEEEEe
Q 003205 167 ELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDA-----GILMLDEDGV----Q---KVDDTLSQKMAVSPNGNFVACF 234 (839)
Q Consensus 167 ~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~-----tv~l~~~~~~----~---~~~~~~i~~ia~Spng~~iA~~ 234 (839)
.+...+ ..+. | +..+.+||||+.+++.+.++ .|++|+.++. . ..+....... ++|+|+.|++.
T Consensus 259 lv~~~~--~~~~-~-~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~ 333 (741)
T 1yr2_A 259 PVFATP--ELPK-R-GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFV 333 (741)
T ss_dssp EEECCT--TCTT-C-EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEE
T ss_pred EEeccC--CCCe-E-EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEE
Confidence 222100 1121 2 33456788999999888654 8999987542 2 1222333333 46999999998
Q ss_pred ecC----CeEEEEecC
Q 003205 235 THD----GRLVVNNTN 246 (839)
Q Consensus 235 ~~~----g~i~i~ssd 246 (839)
+.. +.|++|+.+
T Consensus 334 s~~~~~~~~l~~~d~~ 349 (741)
T 1yr2_A 334 SGDGAPLKKIVRVDLS 349 (741)
T ss_dssp ECTTCTTCEEEEEECS
T ss_pred ECCCCCCCEEEEEeCC
Confidence 864 348888755
No 210
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.52 E-value=0.011 Score=64.86 Aligned_cols=197 Identities=9% Similarity=-0.007 Sum_probs=110.6
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeE-EEecCCCCCeEEEeecCCC--eEEEEEeCCeEEE
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISE-TVWKNPGGRLIGMSWSEDQ--TLICVVQDGTVYR 112 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~t-i~~~~~~~~I~~~~fs~de--~Lv~v~~dGtv~l 112 (839)
..++++|+|+.+.+.... ..+.|.+++..|+++.+ ++.. +. +.+.|++ .+++...||++.+
T Consensus 128 ~~~~~spDG~~l~v~n~~----------~~~~v~viD~t~~~~~~~i~~~---~~---~~~~~~~~~~~~~~~~dg~~~~ 191 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFA----------AGPAVGLVVQGGSSDDQLLSSP---TC---YHIHPGAPSTFYLLCAQGGLAK 191 (373)
T ss_pred cceEECCCCCEEEEEecC----------CCCeEEEEECCCCEEeEEcCCC---ce---EEEEeCCCceEEEEcCCCCEEE
Confidence 468999999999988521 24779999966677777 6543 22 3344544 3467778888888
Q ss_pred EeCCCCccccCC--CCCccccccCe-EEEEEEC--CeEEEEecCCeEEEEecCCCceEEEcCCCC--------CCCCCce
Q 003205 113 YNIHAELIEPNA--SMGKECFEENV-VECVFWG--NGVVCVTEANRYFCMADFATMKVCELARPE--------VEELPHC 179 (839)
Q Consensus 113 ~~~~G~~~~~~~--g~~~~~~~~~V-~~~~~~~--~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~--------~~~~~~~ 179 (839)
++..|+...... ..... ...+ ....+.+ ++.++.+..++++.++- .+.....+.... .+-.|..
T Consensus 192 vd~~g~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~-~~~~~~v~~~~~~~~~~~~~~~~~p~g 268 (373)
T 2mad_H 192 TDHAGGAAGAGLVGAMLTA--AQNLLTQPAQANKSGRIVWPVYSGKILQADI-SAAGATNKAPIDALSGGRKADTWRPGG 268 (373)
T ss_pred EECCCcEEEEEeccccccC--CcceeecceeEecCCEEEEEcCCceEEEEec-cCCcceEeeeeeecCCcccccceecCc
Confidence 876555431100 00000 1111 1122332 44555555566665542 211111111100 0011333
Q ss_pred EEEeCCCCCCCCcEEEEEEe----------CCeEEEEecCCcc---cc-cCCCceEEEECCCCc-EEEEee-cCCeEEEE
Q 003205 180 VAVIEPKYTMTGSVEVLIGT----------DAGILMLDEDGVQ---KV-DDTLSQKMAVSPNGN-FVACFT-HDGRLVVN 243 (839)
Q Consensus 180 w~vi~~~~S~~~~~~v~~s~----------d~tv~l~~~~~~~---~~-~~~~i~~ia~Spng~-~iA~~~-~~g~i~i~ 243 (839)
|..+ .+|+||+.+..+.. +++|.++|..... .. -.+....|+|||||+ .+...+ .+++|.|+
T Consensus 269 ~~~~--~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~Vi 346 (373)
T 2mad_H 269 WQQV--AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIY 346 (373)
T ss_pred eEeE--EECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEE
Confidence 3221 35668876655443 3579999987654 22 223478999999999 566656 48899999
Q ss_pred ecCCCCcccc
Q 003205 244 NTNFSSPVID 253 (839)
Q Consensus 244 ssd~~~~l~e 253 (839)
+..-.+.+..
T Consensus 347 D~~t~~vv~~ 356 (373)
T 2mad_H 347 DAGAGDQDQS 356 (373)
T ss_pred ECCCCCEEee
Confidence 9876666654
No 211
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=97.48 E-value=0.046 Score=63.54 Aligned_cols=266 Identities=12% Similarity=0.045 Sum_probs=153.5
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC---CCCceeEEEecCCCCCeEEEeec----CCCeE--EEEEe
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS---AGVLISETVWKNPGGRLIGMSWS----EDQTL--ICVVQ 106 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~---~G~ll~ti~~~~~~~~I~~~~fs----~de~L--v~v~~ 106 (839)
..+++||+|..+.+.. .++.|.+|+. +++.+.+|+- . .....+.|| |||+. ++-..
T Consensus 200 ~~v~~SpDGr~lyv~~------------~dg~V~viD~~~~t~~~v~~i~~-G--~~P~~ia~s~~~~pDGk~l~v~n~~ 264 (567)
T 1qks_A 200 HISRLSASGRYLFVIG------------RDGKVNMIDLWMKEPTTVAEIKI-G--SEARSIETSKMEGWEDKYAIAGAYW 264 (567)
T ss_dssp EEEEECTTSCEEEEEE------------TTSEEEEEETTSSSCCEEEEEEC-C--SEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred cceEECCCCCEEEEEc------------CCCeEEEEECCCCCCcEeEEEec-C--CCCceeEEccccCCCCCEEEEEEcc
Confidence 4789999999887765 3678999998 7889998875 2 457899999 69974 34455
Q ss_pred CCeEEEEeC-CCCccc-cCCCC-Cccc----cccCeEEEEEECC-eEEEEe--cCCeEEEEecCCC--ceEEEcCCCCCC
Q 003205 107 DGTVYRYNI-HAELIE-PNASM-GKEC----FEENVVECVFWGN-GVVCVT--EANRYFCMADFAT--MKVCELARPEVE 174 (839)
Q Consensus 107 dGtv~l~~~-~G~~~~-~~~g~-~~~~----~~~~V~~~~~~~~-G~v~~t--~~~~~~~v~~~~~--~~~~~l~~~~~~ 174 (839)
+++|.++|. .++..+ ...+. .... -+..|..+.++++ ...+++ .+++++.++-... .....+. .+
T Consensus 265 ~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~---~~ 341 (567)
T 1qks_A 265 PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS---AE 341 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE---CC
T ss_pred CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee---cc
Confidence 699999984 344432 22211 0000 0124555555653 333333 3466776653221 1122221 11
Q ss_pred CCCceEEEeCCCCCCCCcEEEEEEe-CCeEEEEecCCcc-----cc-cCCC--ceEEE-ECCCCcEE-EEee-cCCeEEE
Q 003205 175 ELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDEDGVQ-----KV-DDTL--SQKMA-VSPNGNFV-ACFT-HDGRLVV 242 (839)
Q Consensus 175 ~~~~~w~vi~~~~S~~~~~~v~~s~-d~tv~l~~~~~~~-----~~-~~~~--i~~ia-~Spng~~i-A~~~-~~g~i~i 242 (839)
..+++ + .|||||...+.++. +++|.++|..... .. ...| -.... ++|+|..+ ++.. .+++|.+
T Consensus 342 ~~~~d--~---~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsv 416 (567)
T 1qks_A 342 RFLHD--G---GLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVAL 416 (567)
T ss_dssp SSEEE--E---EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred ccccC--c---eECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEE
Confidence 12232 2 35669998777664 8899999987543 12 1111 11222 68986554 3332 4678999
Q ss_pred EecCC-------CCccccccCCC------CCCCC-ceeeecC---------ceEEEEe-c-C---------EEEEEc---
Q 003205 243 NNTNF-------SSPVIDESCES------ALPPE-QIAWCGM---------DSVLLYW-N-D---------MLVMVA--- 285 (839)
Q Consensus 243 ~ssd~-------~~~l~e~~~~~------~~~p~-~~~WcG~---------d~vv~~~-~-~---------~l~lig--- 285 (839)
++.+- -+.+.+..+.. ...|. .-.|..+ ++|.+.= + . ++.-++
T Consensus 417 id~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~ 496 (567)
T 1qks_A 417 IGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA 496 (567)
T ss_dssp EECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHH
T ss_pred ecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccc
Confidence 98774 22333333321 12333 5778733 2444421 1 1 122222
Q ss_pred ---CCC---CceEeccCCCeEEee-----cCCc-eEEEccCcceeeeccch
Q 003205 286 ---PQA---EPVQYFYDEPLVLIP-----ECDG-VRILSNSSMEFLQRVPA 324 (839)
Q Consensus 286 ---~~~---~~v~f~~~~~~~l~~-----E~DG-vRIit~~~~~~l~~Vp~ 324 (839)
..+ ..+.|+.++.-+.++ +-+| |-|+.....+++.++++
T Consensus 497 ~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 497 GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred ccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 123 267778888877666 2355 99999999999999886
No 212
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=97.45 E-value=0.021 Score=59.82 Aligned_cols=151 Identities=11% Similarity=0.073 Sum_probs=91.1
Q ss_pred CCeEEEeecCCCeEEEE--------EeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEEECC-eEEEEec-CCeEEE
Q 003205 88 GRLIGMSWSEDQTLICV--------VQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWGN-GVVCVTE-ANRYFC 156 (839)
Q Consensus 88 ~~I~~~~fs~de~Lv~v--------~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~-G~v~~t~-~~~~~~ 156 (839)
....++.|++++.+.++ ..+|.|.+|+. .|++..+..+.. ......+..+.+.++ |.++++. ...++.
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~ 96 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEV-NGYGGIPAGCQCDRDANQLFVADMRLGLLV 96 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEE-TTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEeccc-CCCCCCCceEEEecCCCcEEEEECCCCEEE
Confidence 56789999999998766 78899999985 677654333100 000345777888787 8766655 445665
Q ss_pred EecCCCceEEEc-CCCCCC---CCCceEEEeCCCCCCCCcEEEEEEeC---------------CeEEEEecCCcc---cc
Q 003205 157 MADFATMKVCEL-ARPEVE---ELPHCVAVIEPKYTMTGSVEVLIGTD---------------AGILMLDEDGVQ---KV 214 (839)
Q Consensus 157 v~~~~~~~~~~l-~~~~~~---~~~~~w~vi~~~~S~~~~~~v~~s~d---------------~tv~l~~~~~~~---~~ 214 (839)
++ .+ .....+ .....+ ..+.+.. + +++|...+....+ +.|+.++.++.. ..
T Consensus 97 ~d-~~-g~~~~~~~~~~~~~~~~~~~~i~-~----d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 169 (314)
T 1pjx_A 97 VQ-TD-GTFEEIAKKDSEGRRMQGCNDCA-F----DYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDT 169 (314)
T ss_dssp EE-TT-SCEEECCSBCTTSCBCBCCCEEE-E----CTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEE
T ss_pred Ee-CC-CCEEEEEeccCCCccccCCcCEE-E----CCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEecc
Confidence 54 33 334444 221110 1233322 2 3478765544443 578889877543 12
Q ss_pred cCCCceEEEEC----CCCcEEEEe-ecCCeEEEEecC
Q 003205 215 DDTLSQKMAVS----PNGNFVACF-THDGRLVVNNTN 246 (839)
Q Consensus 215 ~~~~i~~ia~S----png~~iA~~-~~~g~i~i~ssd 246 (839)
.......++++ |+|+.+... +.++.|++|+.+
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~ 206 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK 206 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECC
Confidence 22345789999 999765544 457889998743
No 213
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=97.39 E-value=0.052 Score=63.07 Aligned_cols=179 Identities=12% Similarity=0.094 Sum_probs=107.1
Q ss_pred CCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeC---CCCccc-cCCCCCccccccCeEE
Q 003205 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNI---HAELIE-PNASMGKECFEENVVE 137 (839)
Q Consensus 64 ~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~---~G~~~~-~~~g~~~~~~~~~V~~ 137 (839)
.+++|.+++. +|+.+.+|... ..+..+.|||||+ +.+++.||+|.+||+ .++... ...|. ....
T Consensus 175 ~~~~V~viD~~t~~v~~~i~~g---~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-------~P~~ 244 (567)
T 1qks_A 175 DAGQIALIDGSTYEIKTVLDTG---YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-------EARS 244 (567)
T ss_dssp TTTEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-------EEEE
T ss_pred CCCeEEEEECCCCeEEEEEeCC---CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-------CCce
Confidence 5789999996 57888888742 4577999999998 467888999999998 454432 22222 2456
Q ss_pred EEEE----CCeEEEEecC---CeEEEEecCCCce-EEEcCCCC--CCC-----CCceEEEeCCCCCCCCc-EEEEEEeCC
Q 003205 138 CVFW----GNGVVCVTEA---NRYFCMADFATMK-VCELARPE--VEE-----LPHCVAVIEPKYTMTGS-VEVLIGTDA 201 (839)
Q Consensus 138 ~~~~----~~G~v~~t~~---~~~~~v~~~~~~~-~~~l~~~~--~~~-----~~~~w~vi~~~~S~~~~-~~v~~s~d~ 201 (839)
+.|+ ++|..+...+ +.+..++ ..+.. ...++..+ .+. .|+.-.+. .|+++. ..+.+..+|
T Consensus 245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD-~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~---~s~~~~~~vv~~~~~g 320 (567)
T 1qks_A 245 IETSKMEGWEDKYAIAGAYWPPQYVIMD-GETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL---ASHYRPEFIVNVKETG 320 (567)
T ss_dssp EEECCSTTCTTTEEEEEEEETTEEEEEE-TTTCCEEEEEECCEECTTTCCEESCCCEEEEE---ECSSSSEEEEEETTTT
T ss_pred eEEccccCCCCCEEEEEEccCCeEEEEE-CCCCcEEEEEeccccccccccccCCCceEEEE---EcCCCCEEEEEecCCC
Confidence 7888 5775544433 4454444 33222 22222111 100 12322231 233443 333333478
Q ss_pred eEEEEecCCcc-----cc-cCCCceEEEECCCCcEEEEee-cCCeEEEEecCCCCccccccC
Q 003205 202 GILMLDEDGVQ-----KV-DDTLSQKMAVSPNGNFVACFT-HDGRLVVNNTNFSSPVIDESC 256 (839)
Q Consensus 202 tv~l~~~~~~~-----~~-~~~~i~~ia~Spng~~iA~~~-~~g~i~i~ssd~~~~l~e~~~ 256 (839)
+|.++|..... .. .....+.+.|||+|+++...+ .+++|.+++.+-.+.....+.
T Consensus 321 ~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~v 382 (567)
T 1qks_A 321 KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT 382 (567)
T ss_dssp EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred eEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEec
Confidence 88888876532 12 223456889999999865544 577899998875555444444
No 214
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.31 E-value=0.0098 Score=64.21 Aligned_cols=199 Identities=8% Similarity=-0.011 Sum_probs=109.1
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEE-e----cCCCCCeEEEeecCCCeEEEEEe----
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETV-W----KNPGGRLIGMSWSEDQTLICVVQ---- 106 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~-~----~~~~~~I~~~~fs~de~Lv~v~~---- 106 (839)
..|+++|+|..++....- .. ...+|...+ +|++. .++ | ......+.++.|++++.|.++..
T Consensus 20 ~~va~~~~g~~~v~~~~~------~~--~~~~l~~~~-~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~ 89 (343)
T 2qe8_A 20 GNITLTPDGRLFLSLHQF------YQ--PEMQVAELT-QDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQS 89 (343)
T ss_dssp EEEEECTTSCEEEEECGG------GC--CSCSEEEEE-TTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHH
T ss_pred ceEEECCCCCEEEEeCCC------CC--CceEEEEEC-CCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCc
Confidence 478999999887775310 00 012455555 67543 111 1 01125799999999999877764
Q ss_pred --CCeEEEEeCC-CCcc-ccCCCCCccccccCeEEEEEEC-CeEEEEecC-----CeEEEEecCCCceEEEcCCC--CCC
Q 003205 107 --DGTVYRYNIH-AELI-EPNASMGKECFEENVVECVFWG-NGVVCVTEA-----NRYFCMADFATMKVCELARP--EVE 174 (839)
Q Consensus 107 --dGtv~l~~~~-G~~~-~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~-----~~~~~v~~~~~~~~~~l~~~--~~~ 174 (839)
++.|.+||+. |++. ++.++.....-...+.++.+.+ +|.++++.. +.++.+ +..+....++... ...
T Consensus 90 ~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~-d~~~g~~~r~~~~~~~~~ 168 (343)
T 2qe8_A 90 KSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRV-DLQTGLAARVLQGYPGIA 168 (343)
T ss_dssp TSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEE-ETTTCCEEEECTTCTTTS
T ss_pred CCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEE-ECCCCCEEEEecCCCccc
Confidence 4789999975 7753 3333211100023456788885 678877743 344444 3433333332210 000
Q ss_pred C-------------------CCceEE--EeCCCCCCCCcEEEEEEeCC-eEEEEecC----Ccc-----------cccCC
Q 003205 175 E-------------------LPHCVA--VIEPKYTMTGSVEVLIGTDA-GILMLDED----GVQ-----------KVDDT 217 (839)
Q Consensus 175 ~-------------------~~~~w~--vi~~~~S~~~~~~v~~s~d~-tv~l~~~~----~~~-----------~~~~~ 217 (839)
. ....|. +....+||||+.+...+..+ .++.++.. +.. ..+.+
T Consensus 169 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g 248 (343)
T 2qe8_A 169 PEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKP 248 (343)
T ss_dssp CCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECC
T ss_pred ccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCC
Confidence 0 000021 12234666887776666543 66666532 110 11233
Q ss_pred CceEEEECCCCcEEEEeecCCeEEEEec
Q 003205 218 LSQKMAVSPNGNFVACFTHDGRLVVNNT 245 (839)
Q Consensus 218 ~i~~ia~Spng~~iA~~~~~g~i~i~ss 245 (839)
....|+++++|.+.+....++.|.+|+.
T Consensus 249 ~pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 249 ICDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp SCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred CCceEEECCCCCEEEEccCCCeEEEEEC
Confidence 4567888888888777777888888876
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=97.24 E-value=0.0057 Score=64.52 Aligned_cols=190 Identities=11% Similarity=0.086 Sum_probs=104.2
Q ss_pred CeEEEeecCC-CeEE-EEEeCCeEEEEeCCCCc-cccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCceE
Q 003205 89 RLIGMSWSED-QTLI-CVVQDGTVYRYNIHAEL-IEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKV 165 (839)
Q Consensus 89 ~I~~~~fs~d-e~Lv-~v~~dGtv~l~~~~G~~-~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~~ 165 (839)
-.-+..|+++ +.|+ +-..+++|..|+..+.. ..+.. ...+..+.+.++|-+++.....++.++ .++...
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~-------~~~~~~i~~~~dG~l~v~~~~~l~~~d-~~~g~~ 85 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTM-------DAPVSSVALRQSGGYVATIGTKFCALN-WKEQSA 85 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC-------SSCEEEEEEBTTSSEEEEETTEEEEEE-TTTTEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeC-------CCceEEEEECCCCCEEEEECCeEEEEE-CCCCcE
Confidence 3457778875 4554 44457889999976543 22222 335677788888877776666776665 333444
Q ss_pred EEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe-----------CCeEEEEecCCcc---cccCCCceEEEECCCCcEE
Q 003205 166 CELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-----------DAGILMLDEDGVQ---KVDDTLSQKMAVSPNGNFV 231 (839)
Q Consensus 166 ~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~-----------d~tv~l~~~~~~~---~~~~~~i~~ia~Spng~~i 231 (839)
..+..... ..+. ..+....++|+|.+.+.... .+.|+.++.++.. .........|++||+|+.+
T Consensus 86 ~~~~~~~~-~~~~-~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~l 163 (297)
T 3g4e_A 86 VVLATVDN-DKKN-NRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIF 163 (297)
T ss_dssp EEEEECCT-TCSS-EEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEE
T ss_pred EEEEecCC-CCCC-CCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEE
Confidence 44433211 1111 11112234558885553322 2468888877653 1222335789999999866
Q ss_pred E-EeecCCeEEEEecCC--CC-----ccccccCCCCCCCCceeeecCceEEE-Eec-CEEEEEcCC-CC
Q 003205 232 A-CFTHDGRLVVNNTNF--SS-----PVIDESCESALPPEQIAWCGMDSVLL-YWN-DMLVMVAPQ-AE 289 (839)
Q Consensus 232 A-~~~~~g~i~i~ssd~--~~-----~l~e~~~~~~~~p~~~~WcG~d~vv~-~~~-~~l~lig~~-~~ 289 (839)
. +-+.+++|++++.|. +. .+.++... ...|..|++..+..+.+ .|. ..|..+.|. +.
T Consensus 164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~-~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~ 231 (297)
T 3g4e_A 164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKE-EQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK 231 (297)
T ss_dssp EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGG-GCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC
T ss_pred EEecCCCCcEEEEeccCCCCcccCcEEEEECCCC-CCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce
Confidence 4 445578899987541 11 11122111 23566666654433332 343 357777775 54
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.18 E-value=0.01 Score=66.02 Aligned_cols=185 Identities=10% Similarity=0.075 Sum_probs=108.7
Q ss_pred EEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCce-eEE---EecCCCCCeEEEeecC-CCeEEEEEeCCeEEE
Q 003205 38 VACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLI-SET---VWKNPGGRLIGMSWSE-DQTLICVVQDGTVYR 112 (839)
Q Consensus 38 va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll-~ti---~~~~~~~~I~~~~fs~-de~Lv~v~~dGtv~l 112 (839)
++++|+|+.+.+.... ....|.+|+..+... ..+ .... ...+.++.++| ++.|.+...+|.|+.
T Consensus 176 ia~~~~g~~l~~~d~~----------~~~~I~~~d~~~~~~~~~~g~~~~~~-~~~p~~iav~p~~g~lyv~d~~~~I~~ 244 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWE----------GTHTVYVYMKASGWAPTRIGQLGSTF-SGKIGAVALDETEEWLYFVDSNKNFGR 244 (409)
T ss_dssp CEECTTSSEEEEEBSS----------TTCEEEEEEGGGTTCEEEEEECCTTS-CSCCCBCEECTTSSEEEEECTTCEEEE
T ss_pred eeEecCCCcEEEEecC----------CCceEEEEEcCCCceeEEeeeccchh-cCCcEEEEEeCCCCeEEEEECCCcEEE
Confidence 7788888877666421 122788888776543 333 1212 26788999999 788877778899999
Q ss_pred EeCCCCccc-c----CCCCCccccccCeE-EEEEEC-CeEEEEecC--CeEEEEecCCCceEEEcCCCC----CC-----
Q 003205 113 YNIHAELIE-P----NASMGKECFEENVV-ECVFWG-NGVVCVTEA--NRYFCMADFATMKVCELARPE----VE----- 174 (839)
Q Consensus 113 ~~~~G~~~~-~----~~g~~~~~~~~~V~-~~~~~~-~G~v~~t~~--~~~~~v~~~~~~~~~~l~~~~----~~----- 174 (839)
|+..+.... + ..+.. ...-. .+.|.+ +|.++++.. +.++.++ .++. ...+.... ..
T Consensus 245 ~d~~~~~~~~~~~~~~~g~~----~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~-~~g~-~~~~~g~~~~~g~~dg~~~ 318 (409)
T 3hrp_A 245 FNVKTQEVTLIKQLELSGSL----GTNPGPYLIYYFVDSNFYMSDQNLSSVYKIT-PDGE-CEWFCGSATQKTVQDGLRE 318 (409)
T ss_dssp EETTTCCEEEEEECCCCSCC----CCSSCCEEEEETTTTEEEEEETTTTEEEEEC-TTCC-EEEEEECTTCCSCBCEEGG
T ss_pred EECCCCCEEEEecccccCCC----CCCccccEEEeCCCCEEEEEeCCCCEEEEEe-cCCC-EEEEEeCCCCCCcCCCccc
Confidence 998654322 2 22210 11112 678888 687777753 4455553 3322 22222100 00
Q ss_pred ----CCCceEEEeCCCCCCCCcEEEEEE-eCCeEEEEe-cCCcc---ccc---------------CCCceEEEECCCCcE
Q 003205 175 ----ELPHCVAVIEPKYTMTGSVEVLIG-TDAGILMLD-EDGVQ---KVD---------------DTLSQKMAVSPNGNF 230 (839)
Q Consensus 175 ----~~~~~w~vi~~~~S~~~~~~v~~s-~d~tv~l~~-~~~~~---~~~---------------~~~i~~ia~Spng~~ 230 (839)
..|... .++++|.+.+.-. .++.|+.|+ .+|.. .++ ......|+++|+|.+
T Consensus 319 ~~~~~~P~gi-----a~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~l 393 (409)
T 3hrp_A 319 EALFAQPNGM-----TVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGY 393 (409)
T ss_dssp GCBCSSEEEE-----EECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEE
T ss_pred ccEeCCCeEE-----EEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCE
Confidence 123332 2345888555555 578999999 55543 111 123578999999877
Q ss_pred EEEeecCCeEEEEe
Q 003205 231 VACFTHDGRLVVNN 244 (839)
Q Consensus 231 iA~~~~~g~i~i~s 244 (839)
.+.-..+++|+.++
T Consensus 394 yVad~~n~~Ir~i~ 407 (409)
T 3hrp_A 394 WIAEAWGKAIRKYA 407 (409)
T ss_dssp EEEESTTCEEEEEE
T ss_pred EEEECCCCeEEEEE
Confidence 77766777777654
No 217
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=97.17 E-value=0.0042 Score=68.58 Aligned_cols=170 Identities=12% Similarity=0.087 Sum_probs=101.2
Q ss_pred CCeEEEeecCCCeE-EEEEeCCeEEEEeCC----------CCccc-cCCCCCccccccCeEEEEEECCeEEEEecCCeEE
Q 003205 88 GRLIGMSWSEDQTL-ICVVQDGTVYRYNIH----------AELIE-PNASMGKECFEENVVECVFWGNGVVCVTEANRYF 155 (839)
Q Consensus 88 ~~I~~~~fs~de~L-v~v~~dGtv~l~~~~----------G~~~~-~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~ 155 (839)
.++..+++++...| ++++.|| +++|++. +++.. ...++ .. |..+.| ++..+++..++ ..
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~l-----p~-V~~l~f-d~~~L~v~~~~-~l 108 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEI-----PD-VIFVCF-HGDQVLVSTRN-AL 108 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEEC-----TT-EEEEEE-ETTEEEEEESS-EE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeC-----CC-eeEEEE-CCCEEEEEcCC-cE
Confidence 56888999998876 4555565 6679632 11111 11111 44 888888 43444444333 33
Q ss_pred EEecCCCc-eEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-cccCCCceEEEECCCCcEEEE
Q 003205 156 CMADFATM-KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-KVDDTLSQKMAVSPNGNFVAC 233 (839)
Q Consensus 156 ~v~~~~~~-~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-~~~~~~i~~ia~Spng~~iA~ 233 (839)
.+++..+. ....+.... ....+...++| ..+++..||+|++|+..+.. ......|..++.||+| +++
T Consensus 109 ~v~dv~sl~~~~~~~~~~--~~v~~i~~~~p-------~~av~~~dG~L~v~dl~~~~~~~~~~~Vs~v~WSpkG--~~v 177 (388)
T 1xip_A 109 YSLDLEELSEFRTVTSFE--KPVFQLKNVNN-------TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQ--LAV 177 (388)
T ss_dssp EEEESSSTTCEEEEEECS--SCEEEEEECSS-------EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSE--EEE
T ss_pred EEEEchhhhccCccceee--cceeeEEecCC-------CEEEEECCCCEEEEEccCCccccccCCceEEEEcCCc--eEE
Confidence 34443321 111221111 11222222332 27777889999999998544 2234579999999999 678
Q ss_pred eecCCeEEEEecCCCCc--cccc------cC--CCCCCCCceeeecCceEEEEe
Q 003205 234 FTHDGRLVVNNTNFSSP--VIDE------SC--ESALPPEQIAWCGMDSVLLYW 277 (839)
Q Consensus 234 ~~~~g~i~i~ssd~~~~--l~e~------~~--~~~~~p~~~~WcG~d~vv~~~ 277 (839)
+..||++.+|+.+.... ..++ .. .....+..+.|.++...++.|
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 88999999998886663 3333 10 113567899999888777765
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=97.16 E-value=0.037 Score=58.32 Aligned_cols=158 Identities=11% Similarity=-0.009 Sum_probs=93.8
Q ss_pred CCCceeEEEecCCCCCeEEEeecCCCe-E-EEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEecC
Q 003205 74 AGVLISETVWKNPGGRLIGMSWSEDQT-L-ICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEA 151 (839)
Q Consensus 74 ~G~ll~ti~~~~~~~~I~~~~fs~de~-L-v~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~ 151 (839)
.|..+..+.-.. ...-+..|+++++ | ++-..+|.+..|+..|+...+..+ ...+..+.+.++|.++++..
T Consensus 33 ~~~~~~~l~~~~--~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~------~~~~~gl~~d~dG~l~v~~~ 104 (305)
T 3dr2_A 33 GDARLLTLYDQA--TWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDA------TAFTNGNAVDAQQRLVHCEH 104 (305)
T ss_dssp TTCCCEEEECCC--SSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEES------CSCEEEEEECTTSCEEEEET
T ss_pred CCCceEEEecCC--cCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCC------CCccceeeECCCCCEEEEEC
Confidence 455666665433 6778899999987 5 455567899999988876443322 23466677777887776653
Q ss_pred --CeEEEEecCCCceEEEcCCCCCC---CCCceEEEeCCCCCCCCcEEEEE---Ee--------------CCeEEEEecC
Q 003205 152 --NRYFCMADFATMKVCELARPEVE---ELPHCVAVIEPKYTMTGSVEVLI---GT--------------DAGILMLDED 209 (839)
Q Consensus 152 --~~~~~v~~~~~~~~~~l~~~~~~---~~~~~w~vi~~~~S~~~~~~v~~---s~--------------d~tv~l~~~~ 209 (839)
+.++.++ .+ .....+.....+ ..|... .++++|...+.- +. .+.|+.++..
T Consensus 105 ~~~~v~~~~-~~-g~~~~~~~~~~~~~~~~~~~i-----~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 105 GRRAITRSD-AD-GQAHLLVGRYAGKRLNSPNDL-----IVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp TTTEEEEEC-TT-SCEEEEECEETTEECSCCCCE-----EECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred CCCEEEEEC-CC-CCEEEEEeccCCCccCCCCCE-----EECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 3566554 23 223333221100 123322 233478755531 11 2578888874
Q ss_pred -Ccc-cc-cCCCceEEEECCCCcEEEEeecC------CeEEEEecC
Q 003205 210 -GVQ-KV-DDTLSQKMAVSPNGNFVACFTHD------GRLVVNNTN 246 (839)
Q Consensus 210 -~~~-~~-~~~~i~~ia~Spng~~iA~~~~~------g~i~i~ssd 246 (839)
+.. .. .......++|||||+.|...... +.|++++.+
T Consensus 178 ~g~~~~~~~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~ 223 (305)
T 3dr2_A 178 GSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWR 223 (305)
T ss_dssp SCCCEEEEEESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEE
T ss_pred CCcEEEEecCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEec
Confidence 332 11 33345789999999977766554 578888754
No 219
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.12 E-value=0.089 Score=55.52 Aligned_cols=206 Identities=11% Similarity=0.074 Sum_probs=115.4
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeC--C-eEEEE
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQD--G-TVYRY 113 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~d--G-tv~l~ 113 (839)
.++++|+|....+-. ..+.|..|+.+|+....+.. . +.+.++.|+++++|+++... + .|..+
T Consensus 36 gia~~~~g~lyv~d~------------~~~~I~~~d~~g~~~~~~~~-~--~~p~gia~~~dG~l~vad~~~~~~~v~~~ 100 (306)
T 2p4o_A 36 NLASAPDGTIFVTNH------------EVGEIVSITPDGNQQIHATV-E--GKVSGLAFTSNGDLVATGWNADSIPVVSL 100 (306)
T ss_dssp EEEECTTSCEEEEET------------TTTEEEEECTTCCEEEEEEC-S--SEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred eEEECCCCCEEEEeC------------CCCeEEEECCCCceEEEEeC-C--CCceeEEEcCCCcEEEEeccCCcceEEEE
Confidence 678888887444432 46789999999986654432 3 67999999999998666633 3 35555
Q ss_pred e-CCCCccccC-CCCCccccccCeEEEEEECCeEEEEec--CCeEEEEecCCC-ceEEEcCC-----CCCCCCCceEEEe
Q 003205 114 N-IHAELIEPN-ASMGKECFEENVVECVFWGNGVVCVTE--ANRYFCMADFAT-MKVCELAR-----PEVEELPHCVAVI 183 (839)
Q Consensus 114 ~-~~G~~~~~~-~g~~~~~~~~~V~~~~~~~~G~v~~t~--~~~~~~v~~~~~-~~~~~l~~-----~~~~~~~~~w~vi 183 (839)
+ ..|++.... .+. ...-....+|++|.++++. ++.+|.++.-.. ........ ...+.....-.+
T Consensus 101 d~~~g~~~~~~~~~~-----~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi- 174 (306)
T 2p4o_A 101 VKSDGTVETLLTLPD-----AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL- 174 (306)
T ss_dssp ECTTSCEEEEEECTT-----CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred cCCCCeEEEEEeCCC-----ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence 5 467763221 111 0111233457777766664 567887763211 12211100 001111111122
Q ss_pred CCCCCCCCcEEEEEEe-CCeEEEEecCC--cc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcc--cc
Q 003205 184 EPKYTMTGSVEVLIGT-DAGILMLDEDG--VQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPV--ID 253 (839)
Q Consensus 184 ~~~~S~~~~~~v~~s~-d~tv~l~~~~~--~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l--~e 253 (839)
|++|+.+..... .+.|+.++.++ .. ......-..|+++|+|++.+.-...+.|.+++.+ ++.. .+
T Consensus 175 ----s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~ 249 (306)
T 2p4o_A 175 ----KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQ 249 (306)
T ss_dssp ----EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEEC
T ss_pred ----CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEee
Confidence 457776555544 77899998764 21 1111234689999999876666667788888776 4432 12
Q ss_pred ccCCCCCCCCceeeec
Q 003205 254 ESCESALPPEQIAWCG 269 (839)
Q Consensus 254 ~~~~~~~~p~~~~WcG 269 (839)
.... -..|..+++.|
T Consensus 250 ~~~~-~~~p~~~a~~g 264 (306)
T 2p4o_A 250 AEQG-VIGSTAVAFGQ 264 (306)
T ss_dssp GGGT-CTTEEEEEECC
T ss_pred cccc-cCCceEEEEec
Confidence 2222 12466666654
No 220
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.12 E-value=0.013 Score=62.05 Aligned_cols=53 Identities=21% Similarity=0.059 Sum_probs=25.1
Q ss_pred CceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCCCCc
Q 003205 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAEL 119 (839)
Q Consensus 65 ~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~ 119 (839)
++.|..|+..|+.+.+..... ..+.++...+++.+.+++.+|.+..|+..|+.
T Consensus 116 ~~~l~~~d~~g~~~~~~~~~~--~~~~~~~~~~~g~l~vgt~~~~l~~~d~~g~~ 168 (330)
T 3hxj_A 116 DGHLYAINTDGTEKWRFKTKK--AIYATPIVSEDGTIYVGSNDNYLYAINPDGTE 168 (330)
T ss_dssp TSEEEEECTTSCEEEEEECSS--CCCSCCEECTTSCEEEECTTSEEEEECTTSCE
T ss_pred CCEEEEEcCCCCEEEEEcCCC--ceeeeeEEcCCCEEEEEcCCCEEEEECCCCCE
Confidence 344555555555544444332 22333344445555555555555555544443
No 221
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.09 E-value=0.013 Score=64.46 Aligned_cols=211 Identities=11% Similarity=0.043 Sum_probs=120.4
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCC--eEEEEEeCCeEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQ--TLICVVQDGTVY 111 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de--~Lv~v~~dGtv~ 111 (839)
-..++++|+|..+-+..- ...+.|.+++. +++.+.+|+... . .+..|.+ .+++++.||++.
T Consensus 139 P~~~a~spDGk~lyVan~----------~~~~~VsVID~~t~~vv~tI~v~g--~----~~~~P~g~~~~~~~~~DG~~~ 202 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQF----------SPAPAVGVVDLEGKAFKRMLDVPD--C----YHIFPTAPDTFFMHCRDGSLA 202 (386)
T ss_dssp GGGEEECTTSSEEEEEEC----------SSSCEEEEEETTTTEEEEEEECCS--E----EEEEEEETTEEEEEETTSCEE
T ss_pred CceEEEcCCCCEEEEEEc----------CCCCeEEEEECCCCcEEEEEECCC--c----ceeecCCCceeEEECCCCCEE
Confidence 446899999998777641 12578999994 788899997532 1 2223433 356777788776
Q ss_pred EEeCC--CCcccc-CCCCCccccccCeE-EEEEE-CCe-EEEEecCCeEEEEecCCCceEEEcCCCCC--------CCCC
Q 003205 112 RYNIH--AELIEP-NASMGKECFEENVV-ECVFW-GNG-VVCVTEANRYFCMADFATMKVCELARPEV--------EELP 177 (839)
Q Consensus 112 l~~~~--G~~~~~-~~g~~~~~~~~~V~-~~~~~-~~G-~v~~t~~~~~~~v~~~~~~~~~~l~~~~~--------~~~~ 177 (839)
+.++. |+.... ......+ ...+. ...+- ++| .++.+.+++++.++ ..+.....+....+ +-.|
T Consensus 203 ~v~~~~~g~v~~~~~~~~~~~--~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d-~~~~~~~v~~~~~~~~~~~~~~g~~p 279 (386)
T 3sjl_D 203 KVAFGTEGTPEITHTEVFHPE--DEFLINHPAYSQKAGRLVWPTYTGKIHQID-LSSGDAKFLPAVEALTEAERADGWRP 279 (386)
T ss_dssp EEECCSSSCCEEEECCCCSCT--TSCBCSCCEEETTTTEEEEEBTTSEEEEEE-CTTSSCEECCCEESSCHHHHHTTEEE
T ss_pred EEECCCCCeEEEeecceeccc--cccccccceeEcCCCcEEEEeCCCEEEEEE-CCCCcceeecceeccccccccccccC
Confidence 66652 454110 0000000 11111 12332 477 56777788877765 33222222221110 0012
Q ss_pred ceEEEeCCCCCCCCcEEEEEEe----------CCeEEEEecCCcc---c-ccCCCceEEEECCCCc-EEEEee-cCCeEE
Q 003205 178 HCVAVIEPKYTMTGSVEVLIGT----------DAGILMLDEDGVQ---K-VDDTLSQKMAVSPNGN-FVACFT-HDGRLV 241 (839)
Q Consensus 178 ~~w~vi~~~~S~~~~~~v~~s~----------d~tv~l~~~~~~~---~-~~~~~i~~ia~Spng~-~iA~~~-~~g~i~ 241 (839)
..|.. -.++++++.+..+.. .++|.++|..... . .-..+..+|+|||||+ .+-..+ .+|++.
T Consensus 280 ~g~q~--~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~Vs 357 (386)
T 3sjl_D 280 GGWQQ--VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLY 357 (386)
T ss_dssp CSSSC--EEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEE
T ss_pred CCcce--eeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEE
Confidence 12211 123457777666543 3579999987654 1 1123678999999997 444434 378999
Q ss_pred EEecCCCCccccccCCCCCCCCceeee
Q 003205 242 VNNTNFSSPVIDESCESALPPEQIAWC 268 (839)
Q Consensus 242 i~ssd~~~~l~e~~~~~~~~p~~~~Wc 268 (839)
|++..-.+.+.+.++. ..|.+|.+.
T Consensus 358 ViD~~t~k~~~~i~~~--~~p~~l~~s 382 (386)
T 3sjl_D 358 IHDAESGEELRSVNQL--GHGPQVITT 382 (386)
T ss_dssp EEETTTCCEEEEECCC--CSSCCEEEE
T ss_pred EEECCCCcEEEEecCC--CCCceeEEC
Confidence 9998777777666554 478888764
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=97.07 E-value=0.048 Score=58.25 Aligned_cols=188 Identities=11% Similarity=0.035 Sum_probs=104.7
Q ss_pred eEEEeecCC-CeEE-EEEeCCeEEEEeCCCCc-cccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCceEE
Q 003205 90 LIGMSWSED-QTLI-CVVQDGTVYRYNIHAEL-IEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVC 166 (839)
Q Consensus 90 I~~~~fs~d-e~Lv-~v~~dGtv~l~~~~G~~-~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~~~ 166 (839)
.-+..|+|+ +.++ +-..++.|.+|+..+.. ..+.. ...|..+.+.++|..+++....++.++ ..+....
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~-------~~~v~~i~~~~dg~l~v~~~~gl~~~d-~~~g~~~ 122 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVHAL-------PFMGSALAKISDSKQLIASDDGLFLRD-TATGVLT 122 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC-------SSCEEEEEEEETTEEEEEETTEEEEEE-TTTCCEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEC-------CCcceEEEEeCCCeEEEEECCCEEEEE-CCCCcEE
Confidence 356678876 4554 44457889999876543 33222 235677777778877766666676665 3333444
Q ss_pred EcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe------CCeEEEEecCCcc---cccCCCceEEEECCCCcEEEEee-c
Q 003205 167 ELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT------DAGILMLDEDGVQ---KVDDTLSQKMAVSPNGNFVACFT-H 236 (839)
Q Consensus 167 ~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~------d~tv~l~~~~~~~---~~~~~~i~~ia~Spng~~iA~~~-~ 236 (839)
.+..... ..+.. .+....++|+|...+.... .+.|+.++ ++.. .........+++||+|+.+.... .
T Consensus 123 ~~~~~~~-~~~~~-~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~ 199 (326)
T 2ghs_A 123 LHAELES-DLPGN-RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLFADISIPNSICFSPDGTTGYFVDTK 199 (326)
T ss_dssp EEECSST-TCTTE-EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEEEEESSEEEEEECTTSCEEEEEETT
T ss_pred EEeeCCC-CCCCC-CCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEeeCCCcccCCeEEcCCCCEEEEEECC
Confidence 4433111 11111 1222245568885543322 25788888 5543 11223457899999998776654 4
Q ss_pred CCeEEEEecC--CC-C-----ccccccCCCCCCCCceeeecCceEEE-Eec-CEEEEEcCCCC
Q 003205 237 DGRLVVNNTN--FS-S-----PVIDESCESALPPEQIAWCGMDSVLL-YWN-DMLVMVAPQAE 289 (839)
Q Consensus 237 ~g~i~i~ssd--~~-~-----~l~e~~~~~~~~p~~~~WcG~d~vv~-~~~-~~l~lig~~~~ 289 (839)
++.|++++.+ -+ . .+..+... ...|..+.+..+..+.+ .|. ..|..+.+.+.
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~-~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~ 261 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTGI-KGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGN 261 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTS-SSEEEEEEECTTSCEEEEEETTTEEEEECTTCC
T ss_pred CCEEEEEEcccccCCcccCceEEEECCCC-CCCCCeeEECCCCCEEEEEeCCCEEEEECCCCC
Confidence 6789999864 22 1 11122111 23466677665444433 343 46777777665
No 223
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.00 E-value=0.2 Score=53.08 Aligned_cols=197 Identities=11% Similarity=0.046 Sum_probs=109.6
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCC------------------CCCeEEEeecC-
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNP------------------GGRLIGMSWSE- 97 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~------------------~~~I~~~~fs~- 97 (839)
.+++.|+|..+-+.. ..+.|..|+..|..+..+..... .+.+.++.+.+
T Consensus 23 ~i~~d~~g~~l~v~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~ 90 (322)
T 2fp8_A 23 SFTFDSTNKGFYTSV------------QDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ 90 (322)
T ss_dssp CEECCTTCSSEEEEC------------TTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT
T ss_pred EEEEcCCCCEEEEEc------------CCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCC
Confidence 567778776443332 46788889988876766653210 13689999997
Q ss_pred CCeEEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEEC-CeEEEEecC-------------------CeEEEE
Q 003205 98 DQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWG-NGVVCVTEA-------------------NRYFCM 157 (839)
Q Consensus 98 de~Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~-------------------~~~~~v 157 (839)
++.|+++...+.+..++..+...+..........-....++.+-+ +|.+.++.. +.++.+
T Consensus 91 ~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 170 (322)
T 2fp8_A 91 NNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY 170 (322)
T ss_dssp TTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred CCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence 889988876666888887743222111100000012356677777 787766642 234444
Q ss_pred ecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe-CCeEEEEecCCcc-------cccCCCceEEEECCCCc
Q 003205 158 ADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDEDGVQ-------KVDDTLSQKMAVSPNGN 229 (839)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~-d~tv~l~~~~~~~-------~~~~~~i~~ia~Spng~ 229 (839)
+. .+.....+.. .+ ..|... .++++|+.+..+.. ++.|+.++.++.. ....+ -..|+++++|.
T Consensus 171 d~-~~~~~~~~~~-~~-~~p~gi-----a~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~ 241 (322)
T 2fp8_A 171 DP-STKETTLLLK-EL-HVPGGA-----EVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH 241 (322)
T ss_dssp ET-TTTEEEEEEE-EE-SCCCEE-----EECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSC
T ss_pred eC-CCCEEEEecc-CC-ccCcce-----EECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCC
Confidence 32 1122222211 01 223332 24558886665544 6899999887521 11123 46788888887
Q ss_pred EEEEeec----------CCeEEEEecCCCCcccccc
Q 003205 230 FVACFTH----------DGRLVVNNTNFSSPVIDES 255 (839)
Q Consensus 230 ~iA~~~~----------~g~i~i~ssd~~~~l~e~~ 255 (839)
+.+.... .+.|..++.+ ++.+..+.
T Consensus 242 l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~ 276 (322)
T 2fp8_A 242 FWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIP 276 (322)
T ss_dssp EEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEE
T ss_pred EEEEecCcccccccCCCccEEEEECCC-CCEEEEEE
Confidence 5444333 3557777665 45444443
No 224
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.93 E-value=0.028 Score=59.31 Aligned_cols=199 Identities=13% Similarity=0.133 Sum_probs=104.4
Q ss_pred EEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCCCCccc-cCCCCCccccccCeEEEEEECCeEE
Q 003205 68 LRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIE-PNASMGKECFEENVVECVFWGNGVV 146 (839)
Q Consensus 68 I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~~~-~~~g~~~~~~~~~V~~~~~~~~G~v 146 (839)
|..|+.+|+.+.+..... ......... ++.+.+++.+|.+..|+..|+..- +..+. ..+....+.++|.+
T Consensus 80 l~~~d~~g~~~~~~~~~~--~~~~~~~~~-~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~------~~~~~~~~~~~g~l 150 (330)
T 3hxj_A 80 VYAINPDGTEKWRFDTKK--AIVSDFTIF-EDILYVTSMDGHLYAINTDGTEKWRFKTKK------AIYATPIVSEDGTI 150 (330)
T ss_dssp EEEECCCGGGGGGSCC-------CCEEEE-TTEEEEECTTSEEEEECTTSCEEEEEECSS------CCCSCCEECTTSCE
T ss_pred EEEECCCCcEEEEEECCC--CcccCceEE-CCEEEEEecCCEEEEEcCCCCEEEEEcCCC------ceeeeeEEcCCCEE
Confidence 888899998887665443 222222222 788888888999999987777632 22211 11223334445655
Q ss_pred EEec-CCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----cccCCCceE
Q 003205 147 CVTE-ANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQK 221 (839)
Q Consensus 147 ~~t~-~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----~~~~~~i~~ 221 (839)
++.. ++.++.++.- +...+.+... . ....+ +...++|. ++++. +.|+.++.++.. ......+..
T Consensus 151 ~vgt~~~~l~~~d~~-g~~~~~~~~~-~-~~~~~-----~~~d~~g~--l~v~t-~~l~~~d~~g~~~~~~~~~~~~~~~ 219 (330)
T 3hxj_A 151 YVGSNDNYLYAINPD-GTEKWRFKTN-D-AITSA-----ASIGKDGT--IYFGS-DKVYAINPDGTEKWNFYAGYWTVTR 219 (330)
T ss_dssp EEECTTSEEEEECTT-SCEEEEEECS-S-CCCSC-----CEECTTCC--EEEES-SSEEEECTTSCEEEEECCSSCCCSC
T ss_pred EEEcCCCEEEEECCC-CCEeEEEecC-C-Cceee-----eEEcCCCE--EEEEe-CEEEEECCCCcEEEEEccCCcceec
Confidence 5444 4667766543 3333333210 0 11111 11222554 33444 889999976654 233456888
Q ss_pred EEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecC-EEEEEcCCCC
Q 003205 222 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWND-MLVMVAPQAE 289 (839)
Q Consensus 222 ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~-~l~lig~~~~ 289 (839)
++++++|. |-+++.+|.+..++.+ ++.+..+.... ..+..+..-.++.+.+.-.+ .+..+.+.+.
T Consensus 220 ~~~~~~g~-l~v~t~~~gl~~~~~~-g~~~~~~~~~~-~~~~~~~~~~~g~l~v~t~~ggl~~~d~~g~ 285 (330)
T 3hxj_A 220 PAISEDGT-IYVTSLDGHLYAINPD-GTEKWRFKTGK-RIESSPVIGNTDTIYFGSYDGHLYAINPDGT 285 (330)
T ss_dssp CEECTTSC-EEEEETTTEEEEECTT-SCEEEEEECSS-CCCSCCEECTTSCEEEECTTCEEEEECTTSC
T ss_pred eEECCCCe-EEEEcCCCeEEEECCC-CCEeEEeeCCC-CccccceEcCCCeEEEecCCCCEEEECCCCc
Confidence 99999985 4445667777777654 44444444331 12223333323333333333 5666665444
No 225
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=96.92 E-value=0.013 Score=64.34 Aligned_cols=224 Identities=7% Similarity=-0.010 Sum_probs=114.2
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCC-----CCCeEEEeecCCCeEE-EEEe--C
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNP-----GGRLIGMSWSEDQTLI-CVVQ--D 107 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~-----~~~I~~~~fs~de~Lv-~v~~--d 107 (839)
.+++||+|+.+.+...... ....+..+++|.+|+ .+++.+.+|+.... ......+.|||||+.+ +... +
T Consensus 69 ~i~~spDg~~lyVan~~~~--r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~ 146 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFA--RSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS 146 (368)
T ss_dssp EEEECTTSSCEEEEEEEET--TTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred ceEECCCCCEEEEEccccc--ccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCC
Confidence 7999999999998851000 000001368899999 57899999986410 0246788999999854 4442 4
Q ss_pred CeEEE--EeCCCCccccCCCC-------C-----ccccccCeEEEEEEC----CeEE-----------------------
Q 003205 108 GTVYR--YNIHAELIEPNASM-------G-----KECFEENVVECVFWG----NGVV----------------------- 146 (839)
Q Consensus 108 Gtv~l--~~~~G~~~~~~~g~-------~-----~~~~~~~V~~~~~~~----~G~v----------------------- 146 (839)
+.+.+ +|..- ..+...+. . ..+-...+..+..-. +|.+
T Consensus 147 ~~v~V~~iD~~t-v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~ 225 (368)
T 1mda_H 147 AAAGLSVPGASD-DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML 225 (368)
T ss_dssp CEEEEEETTTEE-EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred CeEEEEEEchhh-ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE
Confidence 57888 76521 10000000 0 000011111111111 1221
Q ss_pred -EEecCCeEEEEecCCCceEEEcCCCCCCC---CCceEEEeC---CCCCCCCcEEEEEEe-C--------CeEEEEecCC
Q 003205 147 -CVTEANRYFCMADFATMKVCELARPEVEE---LPHCVAVIE---PKYTMTGSVEVLIGT-D--------AGILMLDEDG 210 (839)
Q Consensus 147 -~~t~~~~~~~v~~~~~~~~~~l~~~~~~~---~~~~w~vi~---~~~S~~~~~~v~~s~-d--------~tv~l~~~~~ 210 (839)
+.+. +.++.++- .+.....+....+.. .+..|.-.. ..+++||+....... + +++.++|...
T Consensus 226 ~~vs~-~~V~viD~-~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t 303 (368)
T 1mda_H 226 VWAVA-SSILQGDI-PAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV 303 (368)
T ss_dssp EECBS-SCCEEEEC-CSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS
T ss_pred EEEcC-CEEEEEEC-CCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC
Confidence 1222 23332221 111111111111100 012232111 136778887655433 2 3566999876
Q ss_pred cc---cc-cCCCceEEEECCCCcEEEEeec--CCeEEEEecCCCCccccccCCCCCCCCceee
Q 003205 211 VQ---KV-DDTLSQKMAVSPNGNFVACFTH--DGRLVVNNTNFSSPVIDESCESALPPEQIAW 267 (839)
Q Consensus 211 ~~---~~-~~~~i~~ia~Spng~~iA~~~~--~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~W 267 (839)
.. .. -...-+.|+|||||+.+...+. ++++.|++..-.+.+..+.... .|..|+.
T Consensus 304 ~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~--~P~~i~~ 364 (368)
T 1mda_H 304 GQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK--GPESLSV 364 (368)
T ss_dssp CCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS--CCCEEEC
T ss_pred CeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC--CCCEEEe
Confidence 54 11 1124689999999986555454 8999999987677776665542 5666653
No 226
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=96.90 E-value=0.017 Score=68.86 Aligned_cols=194 Identities=11% Similarity=0.014 Sum_probs=105.0
Q ss_pred CEEEEcCCCCeEEEEecCch-hhhhhcccCCceEEEEcCCC-CceeEEEecCC---CCCeEEEeecCCCeEE-EEEe-C-
Q 003205 36 NKVACAPFGGPIAVIRDDSK-IVQLYAESALRKLRIFNSAG-VLISETVWKNP---GGRLIGMSWSEDQTLI-CVVQ-D- 107 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k-~~~~~~~~~~~~I~iy~~~G-~ll~ti~~~~~---~~~I~~~~fs~de~Lv-~v~~-d- 107 (839)
..+++| +|.-|+..+.+.. -...........|.+|+... +.-....+... ....+++.|||||+.+ +... +
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 256 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST 256 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence 456788 8988988875421 00000012346688888532 21112222221 1468899999999853 3332 2
Q ss_pred --CeEEEEeCCC---CccccCCCCCccccccCeEEEEEECCe-EEEEecC----CeEEEEecCCCceE---EEcCCCCCC
Q 003205 108 --GTVYRYNIHA---ELIEPNASMGKECFEENVVECVFWGNG-VVCVTEA----NRYFCMADFATMKV---CELARPEVE 174 (839)
Q Consensus 108 --Gtv~l~~~~G---~~~~~~~g~~~~~~~~~V~~~~~~~~G-~v~~t~~----~~~~~v~~~~~~~~---~~l~~~~~~ 174 (839)
+.++++++.+ ++..... + ...+...-.++++ +++.|.. ++++.++ ++++.. +.|..
T Consensus 257 ~~~~i~~~d~~~~~~~~~~l~~-~-----~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d-~~~~~~~~~~~l~~---- 325 (693)
T 3iuj_A 257 SGNRLYVKDLSQENAPLLTVQG-D-----LDADVSLVDNKGSTLYLLTNRDAPNRRLVTVD-AANPGPAHWRDLIP---- 325 (693)
T ss_dssp SCCEEEEEETTSTTCCCEEEEC-S-----SSSCEEEEEEETTEEEEEECTTCTTCEEEEEE-TTSCCGGGCEEEEC----
T ss_pred CCcEEEEEECCCCCCceEEEeC-C-----CCceEEEEeccCCEEEEEECCCCCCCEEEEEe-CCCCCccccEEEec----
Confidence 3688888643 3433222 2 2223333222344 4444432 3455443 333322 23321
Q ss_pred CCCceEEEeCCCCCCCCcEEEEEEeCC---eEEEEecCCcc--c---ccCCCceEEEECCCCcEEEEeecC----CeEEE
Q 003205 175 ELPHCVAVIEPKYTMTGSVEVLIGTDA---GILMLDEDGVQ--K---VDDTLSQKMAVSPNGNFVACFTHD----GRLVV 242 (839)
Q Consensus 175 ~~~~~w~vi~~~~S~~~~~~v~~s~d~---tv~l~~~~~~~--~---~~~~~i~~ia~Spng~~iA~~~~~----g~i~i 242 (839)
+... ++ .+|++|+.+++...++ .|++|+.+|.. . ...+.+..+++||+|+.+++...+ ++++.
T Consensus 326 ~~~~---~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~ 400 (693)
T 3iuj_A 326 ERQQ---VL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYR 400 (693)
T ss_dssp CCSS---CE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEE
T ss_pred CCCC---EE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEE
Confidence 1111 12 4666899888887644 68899988754 1 233457788889999888876555 67888
Q ss_pred EecC
Q 003205 243 NNTN 246 (839)
Q Consensus 243 ~ssd 246 (839)
++.+
T Consensus 401 ~d~~ 404 (693)
T 3iuj_A 401 FEPK 404 (693)
T ss_dssp ECTT
T ss_pred EECC
Confidence 8754
No 227
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.81 E-value=2 Score=54.22 Aligned_cols=408 Identities=13% Similarity=0.148 Sum_probs=203.5
Q ss_pred CceEEEEcCCC-CceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCCCCc--cccCCCC-CccccccCeEEEEE
Q 003205 65 LRKLRIFNSAG-VLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAEL--IEPNASM-GKECFEENVVECVF 140 (839)
Q Consensus 65 ~~~I~iy~~~G-~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~--~~~~~g~-~~~~~~~~V~~~~~ 140 (839)
..+++|||..- +.+.+...+ ..|+...|-.+..|..|+++. |+-|++.|+- .+.+-.| .-. ...|+.-+.
T Consensus 85 g~~lQiFnl~~k~klks~~~~---e~VvfWkWis~~~l~lVT~~a-VyHW~~~~~s~P~k~fdR~~~L~--~~QIinY~~ 158 (1630)
T 1xi4_A 85 GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWISLNTVALVTDNA-VYHWSMEGESQPVKMFDRHSSLA--GCQIINYRT 158 (1630)
T ss_pred CCeEEEeehHHhhhhcccccC---CCceEEEecCCCeeEEEcCCe-EEEeccCCCCccHHHHhcchhcc--cCeeEEeee
Confidence 57888888643 355555543 679999999999999999887 6779998742 1111111 001 334555555
Q ss_pred ECCeEEEEe-----------cCCeEEEEecCCCceEEEcCCCCCCCCCceEEEe-CCCCCCCCcEEEEEEe---CCeEEE
Q 003205 141 WGNGVVCVT-----------EANRYFCMADFATMKVCELARPEVEELPHCVAVI-EPKYTMTGSVEVLIGT---DAGILM 205 (839)
Q Consensus 141 ~~~G~v~~t-----------~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi-~~~~S~~~~~~v~~s~---d~tv~l 205 (839)
.+++..++. +...+|.+..-.+ +.+ .+...++.-+ .+..++..++.+++.. ++.+.+
T Consensus 159 d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s---Q~i-----egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi 230 (1630)
T 1xi4_A 159 DAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS---QPI-----EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 230 (1630)
T ss_pred CCCCCeEEEEeeccCCCcccceeeeeecccccc---hhh-----hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEE
Confidence 444433322 1223444432111 111 0111122111 1111112223333332 345555
Q ss_pred EecCCc----c-----------cc--cCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeee
Q 003205 206 LDEDGV----Q-----------KV--DDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC 268 (839)
Q Consensus 206 ~~~~~~----~-----------~~--~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~Wc 268 (839)
...... . +. ...--..|.+|+....|-+.|.-|.+++++...+..+ |....+..+ -+.=|
T Consensus 231 ~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i--~~~ris~~~-iF~~~ 307 (1630)
T 1xi4_A 231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI--YMNRISGET-IFVTA 307 (1630)
T ss_pred EecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhh--hhccccCCc-eEEec
Confidence 554321 1 00 0111248889999999999999999999986655555 322211111 11112
Q ss_pred cC---ceEEE-EecCEEEEEcCCCC-ceEeccCC---C-----eEEeecCCc---------------------eEEEccC
Q 003205 269 GM---DSVLL-YWNDMLVMVAPQAE-PVQYFYDE---P-----LVLIPECDG---------------------VRILSNS 314 (839)
Q Consensus 269 G~---d~vv~-~~~~~l~lig~~~~-~v~f~~~~---~-----~~l~~E~DG---------------------vRIit~~ 314 (839)
.+ .+++. .-...|.-++.+.+ -|.|.-+. + +.......| +++--+.
T Consensus 308 ~~~~~~g~~~vnr~G~vl~v~v~~~~iv~yi~~~l~~~~la~~~a~r~~lpGad~l~~~~F~~l~~~g~y~~AA~~aa~s 387 (1630)
T 1xi4_A 308 PHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANA 387 (1630)
T ss_pred cCCCCCceEEEcCCceEEEEEEccchhhhhHhhccCCHHHHHHHHHhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 11 12221 11123333333332 22222110 0 000111111 1111111
Q ss_pred cceeeeccchhhHhhhccCCCCh---hhhHHHHHHHHhccChhhHHHHHHhhhhH----HHHHHHHHHHccccCCHHHHH
Q 003205 315 SMEFLQRVPASTEQIFAIGSTSP---AALLYDALDHFDRRSAKADENLRLIRASL----PKAVEACIDAAGHEFDISRQR 387 (839)
Q Consensus 315 ~~~~l~~Vp~~~~~vf~igS~~p---ga~L~~A~~~~~~~~~~a~e~lr~i~~~L----~~AV~~CI~AA~~e~d~~~Qk 387 (839)
..-+| |-|+... =|.--.+.| +.+|.-=.-.++++.-...|.|..+|.-| .+-++.++....-|++.
T Consensus 388 p~giL-Rt~~ti~-rfk~~~~~pgq~~pll~YF~~ll~~g~Ln~~eSlEl~r~vl~q~r~~lle~Wl~e~KL~~SE---- 461 (1630)
T 1xi4_A 388 PKGIL-RTPDTIR-RFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSE---- 461 (1630)
T ss_pred ccccc-cCHHHHH-HHHcCCCCCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchHHHHHHHHHhCCccccH----
Confidence 11222 2233332 232222333 34555555578888888889888886543 33455555544333333
Q ss_pred HHHHHhchhcccccccChhHHHHHhhhhhhhhccCCCCCcccccHHHHHhCC-hHHHHHHHHHcCChHHHHHHHHHhCCC
Q 003205 388 TLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLT-ASVLIGRLINANCHLLALRISEYLGMN 466 (839)
Q Consensus 388 ~LL~AAsfGk~f~~~~~~~~fv~~c~~LRvLn~lr~~~igi~lT~~Q~~~l~-~~~li~rL~~r~~~~lA~~I~~~l~~~ 466 (839)
+..++++.. .. .|-..=|...+ +..+|.-|+.+|++.-...-|+-.|..
T Consensus 462 -------------------eLGDlv~~~---------d~--~lAl~iY~~a~~~~Kvi~~l~~~gq~~ki~~Y~~~~~~~ 511 (1630)
T 1xi4_A 462 -------------------ELGDLVKSV---------DP--TLALSVYLRANVPNKVIQCFAETGQVQKIVLYAKKVGYT 511 (1630)
T ss_pred -------------------HHHHHHHhc---------Ch--HHHHHHHHhcCCcHHHHHHHHHhCCHHHHHHHHhccCCC
Confidence 333333221 01 11111133333 678999999999999999999999988
Q ss_pred hhhHHHHhHhhhhhhcCCCCh--HHHHHHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHHHH---hcCCCC
Q 003205 467 QEVVIMHWACSKITASLAIPD--VTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLV---EHEPRS 532 (839)
Q Consensus 467 ~~~I~~~WA~~kI~~~~~~~D--~~l~~~I~~kl~~~~~is~~~IA~~A~~~gR~~LA~~Ll---~~E~~~ 532 (839)
+|.+..==-|-++ + ++ -+++..+.+. .. |.+++..|+..=.+.|+.+-|+.+| ..+.++
T Consensus 512 pDy~~ll~~~~~~--~---P~~~~~fa~~L~~~-~~-p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~ 575 (1630)
T 1xi4_A 512 PDWIFLLRNVMRI--S---PDQGQQFAQMLVQD-EE-PLADITQIVDVFMEYNLIQQCTAFLLDALKNNRP 575 (1630)
T ss_pred ccHHHHHHHHhhc--C---hHHHHHHHHHHhcC-CC-CccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCCh
Confidence 8765431111111 1 23 3444444433 22 7899999999999999999999887 455554
No 228
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.76 E-value=0.13 Score=64.54 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHcCCcchHHhH-HhHcCC-ChHHHHHHHHHHHHhCCChhHHHHhhccCCCCCCchHHHHHHHhcCCHHHH
Q 003205 693 SISDTIRTCIVLGNHRAAMKV-KTEFKV-SEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEA 770 (839)
Q Consensus 693 Sl~~ti~~l~~~~~~k~a~~l-~k~fkv-sdkr~~~~kl~ala~~~~w~~L~~f~~~KKspIgyepfv~~~~~~~~~~ea 770 (839)
.+.+.+..|.+.|+.+.|-+. ....+. ++-...--..-+|++.+++++++.|.+.... -.|.-..+.|...|...+|
T Consensus 1136 ay~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~-ad~~~iGd~le~eg~YeeA 1214 (1630)
T 1xi4_A 1136 SYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNN-AHIQQVGDRCYDEKMYDAA 1214 (1630)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCH-HHHHHHHHHHHhcCCHHHH
Confidence 346667777777877654332 221111 2211112267789999999999999875444 4677799999999999999
Q ss_pred HHhhccCCCHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHH
Q 003205 771 LKYIPKLVDPRERAEAYARIGMAKEAADAASQAKDGELLGRL 812 (839)
Q Consensus 771 ~~yI~~i~d~~~r~~~~~~~~~~~~A~~~a~~~kd~~~L~~i 812 (839)
..|-.++++..+....|+++|++.+|++.|.+.++.....++
T Consensus 1215 ~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev 1256 (1630)
T 1xi4_A 1215 KLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEV 1256 (1630)
T ss_pred HHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHH
Confidence 999999998899999999999999999999999998875543
No 229
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=96.45 E-value=0.58 Score=50.38 Aligned_cols=247 Identities=11% Similarity=0.057 Sum_probs=116.1
Q ss_pred CCceEEEEcC-CCCceeEEEecCC-------CCCeEEEeecCCCeEEEEEeCCeEEEEeC-CCCcc-ccCCCCCcccccc
Q 003205 64 ALRKLRIFNS-AGVLISETVWKNP-------GGRLIGMSWSEDQTLICVVQDGTVYRYNI-HAELI-EPNASMGKECFEE 133 (839)
Q Consensus 64 ~~~~I~iy~~-~G~ll~ti~~~~~-------~~~I~~~~fs~de~Lv~v~~dGtv~l~~~-~G~~~-~~~~g~~~~~~~~ 133 (839)
.++.|..|+. +|+.+++...... ...+..---..++.+++.+.+|.+..+|. .|+.. ++..+.... ..
T Consensus 61 ~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~--~~ 138 (376)
T 3q7m_A 61 RAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEAL--SR 138 (376)
T ss_dssp TTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCC--SC
T ss_pred CCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceE--cC
Confidence 4678999997 6999988876421 02232222233778889999999999986 58863 333322110 11
Q ss_pred CeEEEEEECCeEEEEecCCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecC-Ccc
Q 003205 134 NVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED-GVQ 212 (839)
Q Consensus 134 ~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~-~~~ 212 (839)
..+.++-+++.+.++.++.++--.+...+.............+ -.|.. ++..++....++.++.++.. |..
T Consensus 139 ----p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~ 210 (376)
T 3q7m_A 139 ----PVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGE--SAPTT--AFGAAVVGGDNGRVSAVLMEQGQM 210 (376)
T ss_dssp ----CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCC--CCCEE--ETTEEEECCTTTEEEEEETTTCCE
T ss_pred ----CEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCC--CCcEE--ECCEEEEEcCCCEEEEEECCCCcE
Confidence 1223333334455667777764334334443221000000000 00111 23444444557788888864 432
Q ss_pred --c-ccCCC--------ceEEEECC--CCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEE-Eec
Q 003205 213 --K-VDDTL--------SQKMAVSP--NGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLL-YWN 278 (839)
Q Consensus 213 --~-~~~~~--------i~~ia~Sp--ng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~-~~~ 278 (839)
. ....+ +..+..+| .+..+...+.+|.+..++..-++.+.++.... +..+...++ .+.+ ..+
T Consensus 211 ~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~---~~~~~~~~~-~l~~~~~~ 286 (376)
T 3q7m_A 211 IWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS---VNDFIVDGN-RIYLVDQN 286 (376)
T ss_dssp EEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC---EEEEEEETT-EEEEEETT
T ss_pred EEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC---CCCceEECC-EEEEEcCC
Confidence 1 00000 00111122 23455555666777777665455554443221 112222221 1111 112
Q ss_pred CEEEEEcCCCCceEecc-------------CCCeEEeecCCc-eEEEccCcceeeeccch
Q 003205 279 DMLVMVAPQAEPVQYFY-------------DEPLVLIPECDG-VRILSNSSMEFLQRVPA 324 (839)
Q Consensus 279 ~~l~lig~~~~~v~f~~-------------~~~~~l~~E~DG-vRIit~~~~~~l~~Vp~ 324 (839)
..+..+.+..-.+.|.+ .+..+++...|| +.++.....+++.+.+.
T Consensus 287 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 287 DRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp CCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence 23333333222222211 123445555676 99999888888876543
No 230
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.37 E-value=1.2 Score=47.78 Aligned_cols=169 Identities=13% Similarity=0.092 Sum_probs=97.1
Q ss_pred CceEEEEcCCCCceeEEEecCCCCCeEEEeecCC-CeEEEE-EeCCeEEEEeCCCCccccCCCCCccccccCeEEEEE-E
Q 003205 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSED-QTLICV-VQDGTVYRYNIHAELIEPNASMGKECFEENVVECVF-W 141 (839)
Q Consensus 65 ~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~d-e~Lv~v-~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~-~ 141 (839)
...|+..+.+|.....+.-.. ..+.+++|.+. +.|..+ ..++.|+.+++.|...+...... ......+.+ |
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~~--~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~----~~~p~glavd~ 125 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNNL--ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG----LESPGGLAVDW 125 (349)
T ss_dssp BSCEEEECTTSCCEEEEECSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS----CSCCCEEEEET
T ss_pred ccceEEEeCCCCeeEEeecCC--CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC----CCCccEEEEec
Confidence 456888899998777665444 78999999975 456444 35788888998887533222111 011223344 3
Q ss_pred CCeEEEEecC--CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe-C-CeEEEEecCCcc--c--
Q 003205 142 GNGVVCVTEA--NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-D-AGILMLDEDGVQ--K-- 213 (839)
Q Consensus 142 ~~G~v~~t~~--~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~-d-~tv~l~~~~~~~--~-- 213 (839)
.+|.++.+.. +.++.++ .++.....+....+ ..|...++- | .+..+...+. + +.|+.++.+|.. .
T Consensus 126 ~~g~ly~~d~~~~~I~~~~-~dG~~~~~l~~~~l-~~P~~iavd-p----~~g~ly~td~~~~~~I~r~~~dG~~~~~~~ 198 (349)
T 3v64_C 126 VHDKLYWTDSGTSRIEVAN-LDGAHRKVLLWQSL-EKPRAIALH-P----MEGTIYWTDWGNTPRIEASSMDGSGRRIIA 198 (349)
T ss_dssp TTTEEEEEETTTTEEEEEE-TTSCSCEEEECTTC-SCEEEEEEE-T----TTTEEEEEECSSSCEEEEEETTSCSCEESC
T ss_pred CCCeEEEEcCCCCeEEEEc-CCCCceEEEEeCCC-CCcceEEEe-c----CcCeEEEeccCCCCEEEEEeCCCCCcEEEE
Confidence 4666666643 3444433 33332223322222 346555443 2 4555544443 4 789999988864 1
Q ss_pred -ccCCCceEEEECCCCcEEEEee-cCCeEEEEecC
Q 003205 214 -VDDTLSQKMAVSPNGNFVACFT-HDGRLVVNNTN 246 (839)
Q Consensus 214 -~~~~~i~~ia~Spng~~iA~~~-~~g~i~i~ssd 246 (839)
.....-..|+++|+++.|-... ..++|+.++.|
T Consensus 199 ~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 199 DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 1223357899998776554433 34568877765
No 231
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=96.33 E-value=0.0017 Score=71.26 Aligned_cols=183 Identities=11% Similarity=0.014 Sum_probs=88.1
Q ss_pred CCCeEEEEecCchhhhhhcccCCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCeEEE-EEeCCeEEEEeC-CCCc
Q 003205 43 FGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQTLIC-VVQDGTVYRYNI-HAEL 119 (839)
Q Consensus 43 ~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~-v~~dGtv~l~~~-~G~~ 119 (839)
+|+.+++.. .++.|..|+ .+|++++++.. +.+.+.-+.+++.+++ .+.||+++.||. .|+.
T Consensus 8 ~~~~v~~gs------------~dg~v~a~d~~tG~~~W~~~~----~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~ 71 (369)
T 2hz6_A 8 PETLLFVST------------LDGSLHAVSKRTGSIKWTLKE----DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG 71 (369)
T ss_dssp CTTEEEEEE------------TTSEEEEEETTTCCEEEEEEC----CCSCCCC-----CCEEECTTTCCEEEC-----CC
T ss_pred eCCEEEEEc------------CCCEEEEEECCCCCEEEEecC----CCceecceEcCCCEEEEeCCCCEEEEEECCCCce
Confidence 577777765 578999999 69999998876 3344455566776554 478999999987 6876
Q ss_pred cccCCCCCccccccCeE-EEEEECCeEEEEe-cCCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEE
Q 003205 120 IEPNASMGKECFEENVV-ECVFWGNGVVCVT-EANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLI 197 (839)
Q Consensus 120 ~~~~~g~~~~~~~~~V~-~~~~~~~G~v~~t-~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~ 197 (839)
......+. ...+. ...+..+|.+++. .++.++.++--.+...+.+.. +. . ..++|++..+++.
T Consensus 72 ~w~~~~~~----~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~------~~-~----~~~~p~~~~v~~~ 136 (369)
T 2hz6_A 72 LTKLPFTI----PELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSS------AF-A----DSLSPSTSLLYLG 136 (369)
T ss_dssp SEECSCCH----HHHHTTCSCC-----CCCCEEEEEEEEECCC---------------------------------EEEE
T ss_pred eeeeeccC----ccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecC------CC-c----ccccccCCEEEEE
Confidence 32111110 00000 0011134444332 344555544322222233221 11 1 1234578888888
Q ss_pred EeCCeEEEEecC-Ccc--cccCCCceEEEECCCC---cEEEEeecCCeEEEEecCCCCccccccC
Q 003205 198 GTDAGILMLDED-GVQ--KVDDTLSQKMAVSPNG---NFVACFTHDGRLVVNNTNFSSPVIDESC 256 (839)
Q Consensus 198 s~d~tv~l~~~~-~~~--~~~~~~i~~ia~Spng---~~iA~~~~~g~i~i~ssd~~~~l~e~~~ 256 (839)
+.+++|+.||.. |.. ......+...++++++ ..+...+.+|.+..|+.+-++.+-+++.
T Consensus 137 ~~dg~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 137 RTEYTITMYDTKTRELRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp EEEEEEECCCSSSSSCCCEEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred ecCCEEEEEECCCCCEEEeEecccccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 889999999975 432 1111123344455542 4566677889999998765666655543
No 232
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.32 E-value=0.81 Score=47.10 Aligned_cols=192 Identities=8% Similarity=0.067 Sum_probs=116.5
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEE-eCCeEEEE
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVV-QDGTVYRY 113 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~-~dGtv~l~ 113 (839)
-.-+++.|+++.+.++.| .++.|..++.+|+.+.+++... .+..-++.+.+++.++++. .++.+.++
T Consensus 29 lSGla~~~~~~~L~aV~d-----------~~~~I~~ld~~g~v~~~i~l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 29 ISSLTWSAQSNTLFSTIN-----------KPAAIVEMTTNGDLIRTIPLDF-VKDLETIEYIGDNQFVISDERDYAIYVI 96 (255)
T ss_dssp EEEEEEETTTTEEEEEEE-----------TTEEEEEEETTCCEEEEEECSS-CSSEEEEEECSTTEEEEEETTTTEEEEE
T ss_pred cceeEEeCCCCEEEEEEC-----------CCCeEEEEeCCCCEEEEEecCC-CCChHHeEEeCCCEEEEEECCCCcEEEE
Confidence 347889999888887765 3788999999999999998765 3678999999999886665 55677777
Q ss_pred eC--CCCc---cc--cCCCCCccccccCeEEEEEECCe--EEEEecC-C-eEEEEecCCC-ceEEEcC------CCCCCC
Q 003205 114 NI--HAEL---IE--PNASMGKECFEENVVECVFWGNG--VVCVTEA-N-RYFCMADFAT-MKVCELA------RPEVEE 175 (839)
Q Consensus 114 ~~--~G~~---~~--~~~g~~~~~~~~~V~~~~~~~~G--~v~~t~~-~-~~~~v~~~~~-~~~~~l~------~~~~~~ 175 (839)
++ .|+. .+ +.++.... ..+.-.+.+.+.| +.++... . .+|.+..+.. .....+. ...+ .
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~--N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~-~ 173 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPT--NCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTL-D 173 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCC--SSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCS-S
T ss_pred EcCCCCeeeeeeeeccccccccc--cCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccccc-C
Confidence 53 4431 11 11111111 3344455666543 3333332 2 4666664321 1111111 1111 3
Q ss_pred CCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----cccC---------CCceEEEECCCCcEEEEeecCCeEEE
Q 003205 176 LPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDD---------TLSQKMAVSPNGNFVACFTHDGRLVV 242 (839)
Q Consensus 176 ~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----~~~~---------~~i~~ia~Spng~~iA~~~~~g~i~i 242 (839)
.++.-++.|. +|.+.++.+.++.+..+|.+|.. .+.. ..-..|+|.|+|. |=..++-..+|+
T Consensus 174 d~S~l~~dp~----tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~ 248 (255)
T 3qqz_A 174 DVSGAEFNQQ----KNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYR 248 (255)
T ss_dssp CCCEEEEETT----TTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEE
T ss_pred CceeEEEcCC----CCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEE
Confidence 4666666554 66777776678888888888764 1111 1347999999996 444466556777
Q ss_pred EecC
Q 003205 243 NNTN 246 (839)
Q Consensus 243 ~ssd 246 (839)
++.+
T Consensus 249 f~~~ 252 (255)
T 3qqz_A 249 FTPQ 252 (255)
T ss_dssp EEC-
T ss_pred EEec
Confidence 6543
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=96.19 E-value=0.87 Score=46.45 Aligned_cols=168 Identities=9% Similarity=0.005 Sum_probs=94.4
Q ss_pred ceEEEEcCCCCceeE------EEecCCCCCeEEEeecCCC-eEEEEE-eCCeEEEEeCCCCccccCCCCCccccccCeEE
Q 003205 66 RKLRIFNSAGVLISE------TVWKNPGGRLIGMSWSEDQ-TLICVV-QDGTVYRYNIHAELIEPNASMGKECFEENVVE 137 (839)
Q Consensus 66 ~~I~iy~~~G~ll~t------i~~~~~~~~I~~~~fs~de-~Lv~v~-~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~ 137 (839)
+.|+.++.+|..... +.-.. ..+.++.|++++ .|.++. .++.|..+++.|.......... ......
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~--~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~----~~~p~~ 83 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPA--KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD----LGSPEG 83 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEE--EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT----CCCEEE
T ss_pred CeEEEEEecCcccccccceeeecCCC--CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC----CCCccE
Confidence 578888888875431 22112 567899999854 564443 4678999999887533222110 124566
Q ss_pred EEEEC-CeEEEEecC--CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe---CCeEEEEecCCc
Q 003205 138 CVFWG-NGVVCVTEA--NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT---DAGILMLDEDGV 211 (839)
Q Consensus 138 ~~~~~-~G~v~~t~~--~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~---d~tv~l~~~~~~ 211 (839)
+.+.+ +|.++++.. +.++.++ .++.....+...++ ..|...++ . |++..+..... .+.|+.++.+|.
T Consensus 84 ia~d~~~~~lyv~d~~~~~I~~~~-~~g~~~~~~~~~~~-~~P~~i~v-d----~~~g~lyv~~~~~~~~~I~~~~~dg~ 156 (267)
T 1npe_A 84 IALDHLGRTIFWTDSQLDRIEVAK-MDGTQRRVLFDTGL-VNPRGIVT-D----PVRGNLYWTDWNRDNPKIETSHMDGT 156 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEE-TTSCSCEEEECSSC-SSEEEEEE-E----TTTTEEEEEECCSSSCEEEEEETTSC
T ss_pred EEEEecCCeEEEEECCCCEEEEEE-cCCCCEEEEEECCC-CCccEEEE-e----eCCCEEEEEECCCCCcEEEEEecCCC
Confidence 67765 566666643 3455443 33322222222112 33444333 3 35555555543 368888888875
Q ss_pred c--c---ccCCCceEEEECCCCcEEEEee-cCCeEEEEecC
Q 003205 212 Q--K---VDDTLSQKMAVSPNGNFVACFT-HDGRLVVNNTN 246 (839)
Q Consensus 212 ~--~---~~~~~i~~ia~Spng~~iA~~~-~~g~i~i~ssd 246 (839)
. . .....-..|+++|+|+.|-... ..++|++++.+
T Consensus 157 ~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~ 197 (267)
T 1npe_A 157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA 197 (267)
T ss_dssp CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecC
Confidence 4 1 1223357899999876554433 34567777654
No 234
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=96.06 E-value=0.11 Score=56.74 Aligned_cols=49 Identities=6% Similarity=-0.117 Sum_probs=37.7
Q ss_pred eEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCeEE-EEE----------eCCeEEEEeC-CCCc
Q 003205 67 KLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLI-CVV----------QDGTVYRYNI-HAEL 119 (839)
Q Consensus 67 ~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~Lv-~v~----------~dGtv~l~~~-~G~~ 119 (839)
+|.+++. +++.+.+|+--. .+ .+.||||++.+ +.. .+++|.+||. .++.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~--~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v 108 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAF--LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP 108 (368)
T ss_dssp EEEEEETTTTEEEEEEEECT--TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred eEEEEECCCCeEEEEEeCCC--CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence 8889984 789999998755 44 89999999854 443 3789999985 4555
No 235
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=95.99 E-value=0.094 Score=56.35 Aligned_cols=187 Identities=6% Similarity=0.003 Sum_probs=99.4
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCC----CCCeEEEeecCC-CeEE-EEE-
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNP----GGRLIGMSWSED-QTLI-CVV- 105 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~----~~~I~~~~fs~d-e~Lv-~v~- 105 (839)
....+++.|+|.+.++-... .....+.|.+|+. .|+++.++..... ...+.++.++++ +.+. +-.
T Consensus 68 ~p~gv~~d~~g~L~v~D~g~-------~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~ 140 (343)
T 2qe8_A 68 TVLGIKSDGNGIVWMLDNGN-------QSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPA 140 (343)
T ss_dssp CEEEEEECSSSEEEEEECHH-------HHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECC
T ss_pred EeeEEEEcCCCcEEEEcCCC-------CcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCc
Confidence 34577888887665543210 0012578999996 5888888876421 135689999975 5553 333
Q ss_pred --eCCeEEEEeCC-CCccccCCCCC-ccc-----------------------cccCeEEEEEECCeE-EEEe-c-CCeEE
Q 003205 106 --QDGTVYRYNIH-AELIEPNASMG-KEC-----------------------FEENVVECVFWGNGV-VCVT-E-ANRYF 155 (839)
Q Consensus 106 --~dGtv~l~~~~-G~~~~~~~g~~-~~~-----------------------~~~~V~~~~~~~~G~-v~~t-~-~~~~~ 155 (839)
.++.|.+|++. |+...+.-+|. ..+ ....+..+.++++|- ++.+ . +.++|
T Consensus 141 ~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~ 220 (343)
T 2qe8_A 141 PDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMY 220 (343)
T ss_dssp SGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEE
T ss_pred cCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEE
Confidence 57889999875 66544332210 000 012344556666663 2222 1 22455
Q ss_pred EEecC--CCce---------EEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEec-CCcc----cc-cCCC
Q 003205 156 CMADF--ATMK---------VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDE-DGVQ----KV-DDTL 218 (839)
Q Consensus 156 ~v~~~--~~~~---------~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~-~~~~----~~-~~~~ 218 (839)
.+.-- ..+. ...+.. . ..|...+ ++++|.+.+....++.|.+|+. +|.. .. ....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~g~--~-g~pdgia-----~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~ 292 (343)
T 2qe8_A 221 RIKSADLSNLQLTDAELGSKIERYSE--K-PICDGIS-----IDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSW 292 (343)
T ss_dssp EEEHHHHTCTTCCHHHHHTTCEEEEE--C-CSCSCEE-----ECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSC
T ss_pred EEEHHHhcCCCCChhhhhcceEeccc--C-CCCceEE-----ECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceec
Confidence 55310 0000 000000 0 1233333 2348877777767899999998 6653 11 1233
Q ss_pred ceEEEECCCCcEEEEee
Q 003205 219 SQKMAVSPNGNFVACFT 235 (839)
Q Consensus 219 i~~ia~Spng~~iA~~~ 235 (839)
...|+|+|+|++.++.+
T Consensus 293 p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 293 TDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp EEEEEECTTSCEEEEEC
T ss_pred CCeeEECCCCcEEEEeC
Confidence 56777777665444433
No 236
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=95.97 E-value=1.7 Score=46.59 Aligned_cols=186 Identities=11% Similarity=0.049 Sum_probs=93.1
Q ss_pred CCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeC-CCCcc-ccCCCCCccccccCeEEEEE
Q 003205 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNI-HAELI-EPNASMGKECFEENVVECVF 140 (839)
Q Consensus 64 ~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~-~G~~~-~~~~g~~~~~~~~~V~~~~~ 140 (839)
.++.|..++. +|+++.+..... ........ .++.+++.+.+|.+..+|. .|+.. ++..+..... ........+
T Consensus 111 ~~g~l~a~d~~tG~~~W~~~~~~--~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~-~~~~~~~~~ 186 (376)
T 3q7m_A 111 EKAQVYALNTSDGTVAWQTKVAG--EALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLS-LRGESAPTT 186 (376)
T ss_dssp TTSEEEEEETTTCCEEEEEECSS--CCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC------CCCCCCEE
T ss_pred CCCEEEEEECCCCCEEEEEeCCC--ceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCcee-ecCCCCcEE
Confidence 4688999995 599998887654 11101111 2677888889999999985 68763 2222110000 000011122
Q ss_pred ECCeEEEEecCCeEEEEecCCCceEEEcCCCC-CCC-CCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecC-Ccc--ccc
Q 003205 141 WGNGVVCVTEANRYFCMADFATMKVCELARPE-VEE-LPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED-GVQ--KVD 215 (839)
Q Consensus 141 ~~~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~-~~~-~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~-~~~--~~~ 215 (839)
.++.+++.+.++.++.++.-.+...+...... .+. ....+.-+...-...+..+...+.++.++.++.. |.. ...
T Consensus 187 ~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~ 266 (376)
T 3q7m_A 187 AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE 266 (376)
T ss_dssp ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC
T ss_pred ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc
Confidence 33333333445667766643333333332100 000 0000000000000134556666668889999875 433 222
Q ss_pred CCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcccccc
Q 003205 216 DTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDES 255 (839)
Q Consensus 216 ~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~ 255 (839)
......+++ ++..|-+.+.+|.+..++.+-++.+-+++
T Consensus 267 ~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 267 LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence 333444444 35567777778888888866566554443
No 237
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=95.69 E-value=0.31 Score=54.35 Aligned_cols=183 Identities=11% Similarity=0.050 Sum_probs=100.5
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCC-CCceeEEEecC-CCCCeEEEeecCCCeEEEEEe--------
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISETVWKN-PGGRLIGMSWSEDQTLICVVQ-------- 106 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G~ll~ti~~~~-~~~~I~~~~fs~de~Lv~v~~-------- 106 (839)
.+.++|+|=+|....+. .+..++.|-++|.. ++.+.++.-.. +.+--.++.|+|+++.+++++
T Consensus 142 ~~~~~pdGi~Vs~~g~~-------~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~ 214 (462)
T 2ece_A 142 TVHCGPDAIYISALGNE-------EGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIE 214 (462)
T ss_dssp EEEECSSCEEEEEEEET-------TSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHT
T ss_pred ceeECCCeEEEEcCCCc-------CCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccc
Confidence 35788998333223321 12356899999976 88999887443 112245688999999777765
Q ss_pred ------------CCeEEEEeCC-CCcc-ccCCCCCccccccCeEEEEE--ECCeEEE---Ee-----cCCeEEEEecCCC
Q 003205 107 ------------DGTVYRYNIH-AELI-EPNASMGKECFEENVVECVF--WGNGVVC---VT-----EANRYFCMADFAT 162 (839)
Q Consensus 107 ------------dGtv~l~~~~-G~~~-~~~~g~~~~~~~~~V~~~~~--~~~G~v~---~t-----~~~~~~~v~~~~~ 162 (839)
+.+|.+|++. ++.. +..+|. + ......++| .++|..+ .. .++.++.+.--.+
T Consensus 215 ~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~--~--g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g 290 (462)
T 2ece_A 215 DGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE--E--NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG 290 (462)
T ss_dssp TCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT--T--EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT
T ss_pred cccchhhhhhccCCEEEEEECCCCcEeeEEecCC--C--CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC
Confidence 7889999975 4442 334432 0 233456667 6665332 22 2334443210001
Q ss_pred c----eEEEcCCCC----C----------CCCCceEEEeCCCCCCCCcEEEEEEe-CCeEEEEecCCc--c----cccCC
Q 003205 163 M----KVCELARPE----V----------EELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDEDGV--Q----KVDDT 217 (839)
Q Consensus 163 ~----~~~~l~~~~----~----------~~~~~~w~vi~~~~S~~~~~~v~~s~-d~tv~l~~~~~~--~----~~~~~ 217 (839)
. +...++... + +..|.. + ..|+||+.+-.... .++|.+++.... . ....+
T Consensus 291 ~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~--I---~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tG 365 (462)
T 2ece_A 291 KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD--I---DISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLG 365 (462)
T ss_dssp EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC--E---EECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECB
T ss_pred ceeEEEEEeCCCccccccccccccccccCCCceeE--E---EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeC
Confidence 0 011111100 0 011221 2 24669887654444 778888886421 1 11111
Q ss_pred ----------------CceEEEECCCCcEEEEee
Q 003205 218 ----------------LSQKMAVSPNGNFVACFT 235 (839)
Q Consensus 218 ----------------~i~~ia~Spng~~iA~~~ 235 (839)
.=..|++||||++|...+
T Consensus 366 G~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 366 GIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 127899999999999888
No 238
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=95.67 E-value=2.6 Score=45.28 Aligned_cols=195 Identities=12% Similarity=0.036 Sum_probs=106.4
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecC-CCeEE-EEEeCCeEEEEe
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSE-DQTLI-CVVQDGTVYRYN 114 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~-de~Lv-~v~~dGtv~l~~ 114 (839)
...+...+.|.++.-|+..-..+=.+...+.|..++.+|....++.-.. .....++++.+ ++.|. +-..++.|.+++
T Consensus 66 ~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~-~~~p~glavd~~~g~ly~~d~~~~~I~~~~ 144 (349)
T 3v64_C 66 TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG-LESPGGLAVDWVHDKLYWTDSGTSRIEVAN 144 (349)
T ss_dssp EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC-CCCccEEEEecCCCeEEEEcCCCCeEEEEc
Confidence 3344555567776654321111111234678999999998777764433 24567788876 55664 445567899999
Q ss_pred CCCCccccCCCCCccccccCeEEEEEEC-CeEEEEecC---CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCC
Q 003205 115 IHAELIEPNASMGKECFEENVVECVFWG-NGVVCVTEA---NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMT 190 (839)
Q Consensus 115 ~~G~~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~---~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~ 190 (839)
+.|...+...... -.....+.+.+ +|.++.|.. ++++.++ .++.....+....+ ..|...++ +|+
T Consensus 145 ~dG~~~~~l~~~~----l~~P~~iavdp~~g~ly~td~~~~~~I~r~~-~dG~~~~~~~~~~~-~~PnGla~-----d~~ 213 (349)
T 3v64_C 145 LDGAHRKVLLWQS----LEKPRAIALHPMEGTIYWTDWGNTPRIEASS-MDGSGRRIIADTHL-FWPNGLTI-----DYA 213 (349)
T ss_dssp TTSCSCEEEECTT----CSCEEEEEEETTTTEEEEEECSSSCEEEEEE-TTSCSCEESCCSSC-SCEEEEEE-----ETT
T ss_pred CCCCceEEEEeCC----CCCcceEEEecCcCeEEEeccCCCCEEEEEe-CCCCCcEEEEECCC-CCcceEEE-----eCC
Confidence 9998754433221 12345667775 777777753 3455554 33333333332122 33554443 225
Q ss_pred CcEEEEEEe-CCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEe
Q 003205 191 GSVEVLIGT-DAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (839)
Q Consensus 191 ~~~~v~~s~-d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~s 244 (839)
++.+..+.. .+.|..++.+|.. ......-..|++ .+|....+-..++.|..++
T Consensus 214 ~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 214 GRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred CCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEE
Confidence 565555554 6788999988753 112223356776 3333333323345566555
No 239
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=95.61 E-value=0.011 Score=65.90 Aligned_cols=169 Identities=17% Similarity=0.134 Sum_probs=55.1
Q ss_pred HHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHHHHHHHHcCCcchHHhHH-hHc-CCChH
Q 003205 645 KRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVK-TEF-KVSEK 722 (839)
Q Consensus 645 ~~L~~a~~~~~~~~~~~f~~~~~~~~~~Ll~~Q~~Le~~~~~~~f~~~Sl~~ti~~l~~~~~~k~a~~l~-k~f-kvsdk 722 (839)
..|..|.+.+.+.+++..+....+-+.+..+++..++.=...++. ....+.+..+...|..+.|.+.- ..- +.++.
T Consensus 17 ~~ld~A~~fae~~~~~~vWs~La~A~l~~g~~~eAIdsfika~D~--~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~ 94 (449)
T 1b89_A 17 GNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDP--SSYMEVVQAANTSGNWEELVKYLQMARKKARES 94 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHcCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccc
Confidence 345666666655444445556666666666655554431111111 12344445555566665544421 111 12222
Q ss_pred HHHHHHHHHHHhCCChhHHHHhhccCCCCCCchHHHHHHHhcCCHHHHHHhhccCCCHHHHHHHHHHcCCHHHHHHHHHh
Q 003205 723 RWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIGMAKEAADAASQ 802 (839)
Q Consensus 723 r~~~~kl~ala~~~~w~~L~~f~~~KKspIgyepfv~~~~~~~~~~ea~~yI~~i~d~~~r~~~~~~~~~~~~A~~~a~~ 802 (839)
...---+.++++.|+|++++.|.+. .....|.-+-+.|...|..++|..|-.+++........+.++|+|.+|++.+.+
T Consensus 95 ~i~~~Li~~Y~Klg~l~e~e~f~~~-pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~K 173 (449)
T 1b89_A 95 YVETELIFALAKTNRLAELEEFING-PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK 173 (449)
T ss_dssp --------------CHHHHTTTTTC-C----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhCCHHHHHHHHcC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHH
Confidence 2233345589999999999999974 233578888999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHh
Q 003205 803 AKDGELLGRLKLTF 816 (839)
Q Consensus 803 ~kd~~~L~~i~~~~ 816 (839)
.+++..-+.+-..|
T Consensus 174 A~~~~~Wk~v~~aC 187 (449)
T 1b89_A 174 ANSTRTWKEVCFAC 187 (449)
T ss_dssp HTCHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHH
Confidence 99986555544433
No 240
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=95.61 E-value=0.38 Score=53.53 Aligned_cols=196 Identities=11% Similarity=0.020 Sum_probs=104.7
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCC--eEEEEEeCCeEEE
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQ--TLICVVQDGTVYR 112 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de--~Lv~v~~dGtv~l 112 (839)
..++++|+|+.+-+..- ...+.|.+.+. +++.+.+|+... . .+..|++ .++..+.||++.+
T Consensus 180 ~~~~~spDGk~lyV~n~----------~~~~~VsVID~~t~kvv~~I~v~g--~----~~~~p~g~~~~v~~~~dG~~~~ 243 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQF----------SPAPAVGVVDLEGKTFDRMLDVPD--C----YHIFPASPTVFYMNCRDGSLAR 243 (426)
T ss_dssp GGSEECTTSSEEEEEEC----------SSSCEEEEEETTTTEEEEEEECCS--E----EEEEEEETTEEEEEETTSSEEE
T ss_pred ceEEEcCCCCEEEEEec----------CCCCeEEEEECCCCeEEEEEEcCC--c----eeeccCCCcEEEEEcCCCCEEE
Confidence 46789999998888741 12578999995 678888888632 2 1122222 2344555555444
Q ss_pred EeC-CCCcc-----ccCCCCCccccccCe-EEEEEEC--CeEEEEecCCeEEEEecCCCceEEEcCCCCC---CCCCceE
Q 003205 113 YNI-HAELI-----EPNASMGKECFEENV-VECVFWG--NGVVCVTEANRYFCMADFATMKVCELARPEV---EELPHCV 180 (839)
Q Consensus 113 ~~~-~G~~~-----~~~~g~~~~~~~~~V-~~~~~~~--~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~---~~~~~~w 180 (839)
.+. .|+.. .+..+. ..+ ....+.+ .++.+.+..++++.++-. +.....+..... ...+..|
T Consensus 244 V~~~~~~v~~~~~~~~~v~~------~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~-~~~~~v~~~~~~~~~~~i~~g~ 316 (426)
T 3c75_H 244 VDFADGETKVTNTEVFHTED------ELLINHPAFSLRSGRLVWPTYTGKIFQADLT-AEGATFRAPIEALTEAERADDW 316 (426)
T ss_dssp EECCTTCCEEEECCCCSCTT------SCBCSCCEECTTTCEEEEEBTTSEEEEEEEC-SSCEEECCCEESSCTTTGGGTE
T ss_pred EECCCCcEEEEeeeeeccCC------CceeeEeeecCCCCEEEEEeCCCcEEEEecc-CCceEEeeeeeecccccccccc
Confidence 443 22221 111111 011 1123333 445555666666665532 221111111000 0111122
Q ss_pred EEe---CCCCCCCCcEEEEEEe----------CCeEEEEecCCcc---ccc-CCCceEEEECCCCc-EEEEee-cCCeEE
Q 003205 181 AVI---EPKYTMTGSVEVLIGT----------DAGILMLDEDGVQ---KVD-DTLSQKMAVSPNGN-FVACFT-HDGRLV 241 (839)
Q Consensus 181 ~vi---~~~~S~~~~~~v~~s~----------d~tv~l~~~~~~~---~~~-~~~i~~ia~Spng~-~iA~~~-~~g~i~ 241 (839)
..- +..++++|+.+..... +++|.++|..... ... ...-..|+|||||+ .+...+ .+++|.
T Consensus 317 ~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~Vs 396 (426)
T 3c75_H 317 RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLH 396 (426)
T ss_dssp EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEE
Confidence 211 1135668776555432 3579999987654 221 12367999999999 788777 489999
Q ss_pred EEecCCCCccccc
Q 003205 242 VNNTNFSSPVIDE 254 (839)
Q Consensus 242 i~ssd~~~~l~e~ 254 (839)
|++..-.+.+.++
T Consensus 397 VID~~t~kvv~tI 409 (426)
T 3c75_H 397 IYDAATGEELRSV 409 (426)
T ss_dssp EEETTTCCEEEEE
T ss_pred EEECCCCCEEEEe
Confidence 9998766666554
No 241
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=95.59 E-value=1.8 Score=47.16 Aligned_cols=169 Identities=14% Similarity=0.113 Sum_probs=95.2
Q ss_pred CceEEEEcCCCCceeEEEecCCCCCeEEEeecCC-CeEEEE-EeCCeEEEEeCCCCccccCCCCCccccccCeEEEEE-E
Q 003205 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSED-QTLICV-VQDGTVYRYNIHAELIEPNASMGKECFEENVVECVF-W 141 (839)
Q Consensus 65 ~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~d-e~Lv~v-~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~-~ 141 (839)
...|+.++.+|..+..+.-.. ..+.+++|.+. +.|..+ ..++.|+.+++.|...+....... .....+.+ |
T Consensus 95 ~~~I~~i~~~~~~~~~~~~~~--~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~----~~p~glavd~ 168 (386)
T 3v65_B 95 RIDIRQVLPHRSEYTLLLNNL--ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL----ESPGGLAVDW 168 (386)
T ss_dssp BSCEEEECTTSCCCEEEECSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC----SCCCCEEEET
T ss_pred CccceeeccCCCcEEEEecCC--CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC----CCccEEEEEe
Confidence 467888999988777665444 78999999975 556444 457788889988875332221110 01122333 3
Q ss_pred CCeEEEEecC--CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe-C-CeEEEEecCCcc--c--
Q 003205 142 GNGVVCVTEA--NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-D-AGILMLDEDGVQ--K-- 213 (839)
Q Consensus 142 ~~G~v~~t~~--~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~-d-~tv~l~~~~~~~--~-- 213 (839)
.+|.++.+.. +.++ +-+.++.....+....+ ..|...++ .| .+..+..... + +.|+.++.+|.. .
T Consensus 169 ~~g~lY~~d~~~~~I~-~~~~dg~~~~~l~~~~l-~~P~giav-dp----~~g~ly~td~~~~~~I~r~~~dG~~~~~~~ 241 (386)
T 3v65_B 169 VHDKLYWTDSGTSRIE-VANLDGAHRKVLLWQSL-EKPRAIAL-HP----MEGTIYWTDWGNTPRIEASSMDGSGRRIIA 241 (386)
T ss_dssp TTTEEEEEETTTTEEE-ECBTTSCSCEEEECSSC-SCEEEEEE-ET----TTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred CCCeEEEEcCCCCeEE-EEeCCCCceEEeecCCC-CCCcEEEE-Ec----CCCeEEEeccCCCCEEEEEeCCCCCcEEEE
Confidence 4666555543 2333 33333322222322122 34555444 32 4555554444 4 689999988864 1
Q ss_pred -ccCCCceEEEECCCCcEEEEee-cCCeEEEEecC
Q 003205 214 -VDDTLSQKMAVSPNGNFVACFT-HDGRLVVNNTN 246 (839)
Q Consensus 214 -~~~~~i~~ia~Spng~~iA~~~-~~g~i~i~ssd 246 (839)
.....-..|+++|+++.|-... ..+.|+.++.|
T Consensus 242 ~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 242 DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 1223347899998776554433 34567777655
No 242
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=95.31 E-value=2.3 Score=46.36 Aligned_cols=196 Identities=12% Similarity=0.034 Sum_probs=104.5
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecC-CCeEE-EEEeCCeEEEE
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSE-DQTLI-CVVQDGTVYRY 113 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~-de~Lv-~v~~dGtv~l~ 113 (839)
....+...+.|.++.-|+..-..+=.+...+.|..++.+|....++.-.. .....++++.+ ++.|. +-..++.|.++
T Consensus 108 ~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~-~~~p~glavd~~~g~lY~~d~~~~~I~~~ 186 (386)
T 3v65_B 108 YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG-LESPGGLAVDWVHDKLYWTDSGTSRIEVA 186 (386)
T ss_dssp CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS-CSCCCCEEEETTTTEEEEEETTTTEEEEC
T ss_pred EEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC-CCCccEEEEEeCCCeEEEEcCCCCeEEEE
Confidence 34445556667777655321111111235688999999998777765433 24556777776 45664 44456788888
Q ss_pred eCCCCccccCCCCCccccccCeEEEEEEC-CeEEEEecC---CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCC
Q 003205 114 NIHAELIEPNASMGKECFEENVVECVFWG-NGVVCVTEA---NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTM 189 (839)
Q Consensus 114 ~~~G~~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~---~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~ 189 (839)
++.|...+...... -.....+.+.+ +|.++.+.. ++++.+. .++.....+....+ ..|...++ +|
T Consensus 187 ~~dg~~~~~l~~~~----l~~P~giavdp~~g~ly~td~~~~~~I~r~~-~dG~~~~~~~~~~~-~~PnGlav-----d~ 255 (386)
T 3v65_B 187 NLDGAHRKVLLWQS----LEKPRAIALHPMEGTIYWTDWGNTPRIEASS-MDGSGRRIIADTHL-FWPNGLTI-----DY 255 (386)
T ss_dssp BTTSCSCEEEECSS----CSCEEEEEEETTTTEEEEEECSSSCEEEEEE-TTSCSCEEEECSSC-SCEEEEEE-----EG
T ss_pred eCCCCceEEeecCC----CCCCcEEEEEcCCCeEEEeccCCCCEEEEEe-CCCCCcEEEEECCC-CCeeeEEE-----eC
Confidence 99988744333221 12345666765 676666643 3455543 23222223322122 23554443 22
Q ss_pred CCcEEEEEEe-CCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEe
Q 003205 190 TGSVEVLIGT-DAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (839)
Q Consensus 190 ~~~~~v~~s~-d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~s 244 (839)
+++.+..+.. .+.|+.++.+|.. ......-..|++ ..+....+-..++.|..++
T Consensus 256 ~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 256 AGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp GGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEE
Confidence 5555555544 6788888888753 111223356777 3333333333455566665
No 243
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=94.92 E-value=3.8 Score=44.86 Aligned_cols=165 Identities=8% Similarity=0.020 Sum_probs=92.3
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCC----ceeEEEecCCCCCeEEEeecC-CCeEE-EEEeCCe
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV----LISETVWKNPGGRLIGMSWSE-DQTLI-CVVQDGT 109 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~----ll~ti~~~~~~~~I~~~~fs~-de~Lv-~v~~dGt 109 (839)
+...++..+.++|+.-|+..-..+=.+...+.|+.++.+|. ...++.... .....++++.+ ++.|. +-..++.
T Consensus 104 ~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~-~~~p~glavD~~~~~lY~~d~~~~~ 182 (400)
T 3p5b_L 104 YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVDWIHSNIYWTDSVLGT 182 (400)
T ss_dssp CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS-CSCEEEEEEETTTTEEEEEETTTTE
T ss_pred eeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC-CCCcccEEEEecCCceEEEECCCCe
Confidence 44445666778887765321111111234678888888873 344444433 25678888887 56674 4445788
Q ss_pred EEEEeCCCCccccCCCCCccccccCeEEEEEEC-CeEEEEecC---CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCC
Q 003205 110 VYRYNIHAELIEPNASMGKECFEENVVECVFWG-NGVVCVTEA---NRYFCMADFATMKVCELARPEVEELPHCVAVIEP 185 (839)
Q Consensus 110 v~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~---~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~ 185 (839)
|.+.++.|...+...... -.....+.+.+ +|.++.|.. ..++.+. .++.....+....+ ..|...++ .
T Consensus 183 I~~~~~~g~~~~~l~~~~----~~~P~~iavdp~~g~ly~td~~~~~~I~~~~-~dG~~~~~~~~~~l-~~P~glav-d- 254 (400)
T 3p5b_L 183 VSVADTKGVKRKTLFREN----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG-LNGVDIYSLVTENI-QWPNGITL-D- 254 (400)
T ss_dssp EEEECTTTCSEEEEEECS----SCCEEEEEEETTTTEEEEEECSSSCCEEEEE-TTSCSCEEEECSSC-SCEEEEEE-E-
T ss_pred EEEEeCCCCceEEEEeCC----CCCcceEEEecccCeEEEEeCCCCCEEEEEe-CCCCccEEEEECCC-CceEEEEE-E-
Confidence 999999998754433221 22346677776 777777753 3455443 33332233322122 34555444 2
Q ss_pred CCCCCCcEEEEEEe-CCeEEEEecCCcc
Q 003205 186 KYTMTGSVEVLIGT-DAGILMLDEDGVQ 212 (839)
Q Consensus 186 ~~S~~~~~~v~~s~-d~tv~l~~~~~~~ 212 (839)
++++.+..++. .+.|..++.+|..
T Consensus 255 ---~~~~~lY~aD~~~~~I~~~d~dG~~ 279 (400)
T 3p5b_L 255 ---LLSGRLYWVDSKLHSISSIDVNGGN 279 (400)
T ss_dssp ---TTTTEEEEEETTTTEEEEEETTSCC
T ss_pred ---eCCCEEEEEECCCCEEEEEeCCCCc
Confidence 25665555554 6788889888754
No 244
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=94.84 E-value=1.8 Score=44.80 Aligned_cols=166 Identities=10% Similarity=0.008 Sum_probs=99.6
Q ss_pred CCCceeEEEecCCCCCeEEEeecCCCeEEEEEe---CCeEEEEeC-CCCccc-cCCCCCccccccCeEEEEEECCeEEEE
Q 003205 74 AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQ---DGTVYRYNI-HAELIE-PNASMGKECFEENVVECVFWGNGVVCV 148 (839)
Q Consensus 74 ~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~---dGtv~l~~~-~G~~~~-~~~g~~~~~~~~~V~~~~~~~~G~v~~ 148 (839)
.++.+.+++... .....++.|++|+.|.+.+. +++|+++|+ .|+... ..++. ......+.++++-+.++
T Consensus 8 ~~~vv~~~p~~~-~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~-----~~fgeGi~~~g~~lyv~ 81 (266)
T 2iwa_A 8 IVEVLNEFPHDP-YAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD-----SYFGEGLTLLNEKLYQV 81 (266)
T ss_dssp EEEEEEEEECCT-TCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT-----TCCEEEEEEETTEEEEE
T ss_pred CceEEEEEECCC-CCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC-----CcceEEEEEeCCEEEEE
Confidence 357888898654 13478999999988866654 579999986 577643 33332 11122345555444455
Q ss_pred ec-CCeEEEEecCCCc-eEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cc--cCCC-
Q 003205 149 TE-ANRYFCMADFATM-KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KV--DDTL- 218 (839)
Q Consensus 149 t~-~~~~~~v~~~~~~-~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~--~~~~- 218 (839)
+. ++.++.++ ..+. ....++ .+ .+..|.+- +||+.++....+++|..+|..... .. ...|
T Consensus 82 t~~~~~v~viD-~~t~~v~~~i~---~g-~~~g~glt-----~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~ 151 (266)
T 2iwa_A 82 VWLKNIGFIYD-RRTLSNIKNFT---HQ-MKDGWGLA-----TDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV 151 (266)
T ss_dssp ETTCSEEEEEE-TTTTEEEEEEE---CC-SSSCCEEE-----ECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred EecCCEEEEEE-CCCCcEEEEEE---CC-CCCeEEEE-----ECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccc
Confidence 54 34445444 3322 233343 22 35667643 278777665568899999987643 11 1112
Q ss_pred --ceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccC
Q 003205 219 --SQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESC 256 (839)
Q Consensus 219 --i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~ 256 (839)
...+.+. +|+.-|..-.+++|.+.+..-.+++..++.
T Consensus 152 ~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~ 190 (266)
T 2iwa_A 152 IRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILL 190 (266)
T ss_dssp CCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEEC
T ss_pred ccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEEC
Confidence 4577777 776555544577888888876777666654
No 245
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=94.81 E-value=3.9 Score=42.06 Aligned_cols=163 Identities=9% Similarity=0.047 Sum_probs=94.9
Q ss_pred CceeEEEecCCCCCeEEEeecCCCeE-EEEEeCC--eEEEEeC-CCCcc-ccCCCCCccccccCeEEEEEECCeEEEEec
Q 003205 76 VLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDG--TVYRYNI-HAELI-EPNASMGKECFEENVVECVFWGNGVVCVTE 150 (839)
Q Consensus 76 ~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dG--tv~l~~~-~G~~~-~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~ 150 (839)
+.+.+++.+. ..-.-++.|+ ++.| ++...+| +|+.+|+ .|+.. +..++. ..--..+.+.++-+.++|-
T Consensus 32 ~vv~~~phd~-~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-----~~FgeGit~~g~~ly~ltw 104 (262)
T 3nol_A 32 QIVHSYPHDT-KAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-----RYFGEGISDWKDKIVGLTW 104 (262)
T ss_dssp EEEEEEECCT-TCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-----TCCEEEEEEETTEEEEEES
T ss_pred EEEEEecCCC-CcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-----ccceeEEEEeCCEEEEEEe
Confidence 4667787665 2347889998 6787 5666666 8999986 57763 333332 1111234556666666665
Q ss_pred CCeEEEEecCCC-ceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----cc--cCCCc---
Q 003205 151 ANRYFCMADFAT-MKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KV--DDTLS--- 219 (839)
Q Consensus 151 ~~~~~~v~~~~~-~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~~--~~~~i--- 219 (839)
..+...+-+.++ ....+++- ++..|.+-+ ||+.++..+.+++|+.+|..... .. ...|+
T Consensus 105 ~~~~v~v~D~~t~~~~~ti~~-----~~eG~glt~-----dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~l 174 (262)
T 3nol_A 105 KNGLGFVWNIRNLRQVRSFNY-----DGEGWGLTH-----NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPEL 174 (262)
T ss_dssp SSSEEEEEETTTCCEEEEEEC-----SSCCCCEEE-----CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCE
T ss_pred eCCEEEEEECccCcEEEEEEC-----CCCceEEec-----CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccc
Confidence 443333333332 23334432 235575543 67766655557789999987543 11 12233
Q ss_pred eEEEECCCCcEEEEeecCCeEEEEecCCCCccccccC
Q 003205 220 QKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESC 256 (839)
Q Consensus 220 ~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~ 256 (839)
+.+.+. +|+.-|-.-.+++|.+++..-++++..++.
T Consensus 175 NELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 175 NELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred ceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 345555 777655554567788888776777666554
No 246
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=94.68 E-value=5.1 Score=42.09 Aligned_cols=192 Identities=9% Similarity=0.012 Sum_probs=102.2
Q ss_pred EEcCCCCeEEEEecCc--hhhhhhcccCCceEEEEcCCC----CceeEEEecCCCCCeEEEeecC-CCeEE-EEEeCCeE
Q 003205 39 ACAPFGGPIAVIRDDS--KIVQLYAESALRKLRIFNSAG----VLISETVWKNPGGRLIGMSWSE-DQTLI-CVVQDGTV 110 (839)
Q Consensus 39 a~sp~Gg~IA~~~d~~--k~~~~~~~~~~~~I~iy~~~G----~ll~ti~~~~~~~~I~~~~fs~-de~Lv-~v~~dGtv 110 (839)
.+...+.|.++.-|+. .+.- .+...+.|..++.+| ....++.-.. .....++++.+ ++.|. +-..++.|
T Consensus 25 ~~~~~~~p~g~~~d~~~~~ly~--~D~~~~~I~~~~~~g~~~~~~~~~~~~~~-~~~p~glavd~~~~~ly~~d~~~~~I 101 (316)
T 1ijq_A 25 LIPNLRNVVALDTEVASNRIYW--SDLSQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVDWIHSNIYWTDSVLGTV 101 (316)
T ss_dssp EECSCSSEEEEEEETTTTEEEE--EETTTTEEEEEEC--------CEEEECSS-CSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred hhcCCCceEEEEEEeCCCEEEE--EECCCCcEEEEECCCCCCCcccEEEEeCC-CCCcCEEEEeecCCeEEEEECCCCEE
Confidence 3455666777665532 1221 123468899999887 4444432112 24567888875 56674 44567889
Q ss_pred EEEeCCCCccccCCCCCccccccCeEEEEEEC-CeEEEEecC---CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCC
Q 003205 111 YRYNIHAELIEPNASMGKECFEENVVECVFWG-NGVVCVTEA---NRYFCMADFATMKVCELARPEVEELPHCVAVIEPK 186 (839)
Q Consensus 111 ~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~---~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~ 186 (839)
.++++.|+..+...... -.....+.+.+ +|.++.+.. +.++.++ .++.....+....+ ..|...++
T Consensus 102 ~~~~~~g~~~~~~~~~~----~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~-~dG~~~~~~~~~~~-~~P~gla~---- 171 (316)
T 1ijq_A 102 SVADTKGVKRKTLFREN----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG-LNGVDIYSLVTENI-QWPNGITL---- 171 (316)
T ss_dssp EEEETTSSSEEEEEECT----TCCEEEEEEETTTTEEEEEECSSSCEEEEEE-TTSCCEEEEECSSC-SCEEEEEE----
T ss_pred EEEeCCCCceEEEEECC----CCCcceEEeCCCCCEEEEEccCCCCeEEEEc-CCCCCeEEEEECCC-CCceEEEE----
Confidence 99999998644332211 22346677775 777776653 3455543 33333333322122 34554443
Q ss_pred CCCCCcEEEEEEe-CCeEEEEecCCcc-----cc--cCCCceEEEECCCCcEEEEeecCCeEEEEec
Q 003205 187 YTMTGSVEVLIGT-DAGILMLDEDGVQ-----KV--DDTLSQKMAVSPNGNFVACFTHDGRLVVNNT 245 (839)
Q Consensus 187 ~S~~~~~~v~~s~-d~tv~l~~~~~~~-----~~--~~~~i~~ia~Spng~~iA~~~~~g~i~i~ss 245 (839)
+++++.+..++. .+.|..++.+|.. .. ....-..|++. .|....+-..++.|..++.
T Consensus 172 -d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 172 -DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp -ETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred -eccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeC
Confidence 225666655554 6789999988753 11 11223567774 3333333334556766654
No 247
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=94.57 E-value=5.4 Score=41.90 Aligned_cols=169 Identities=9% Similarity=0.021 Sum_probs=93.7
Q ss_pred CceEEEEcCCCCceeEEEecCCCCCeEEEeecCCC-eEEEEE-eCCeEEEEeCCCC----ccccCCCCCccccccCeEEE
Q 003205 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQ-TLICVV-QDGTVYRYNIHAE----LIEPNASMGKECFEENVVEC 138 (839)
Q Consensus 65 ~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de-~Lv~v~-~dGtv~l~~~~G~----~~~~~~g~~~~~~~~~V~~~ 138 (839)
...|+..+.++.....+.... ..+.++.|.+++ .|..+. .++.|..+++.|. ..+...... -.....+
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~--~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~----~~~p~gl 82 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNL--RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD----IQAPDGL 82 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSC--SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS----CSCCCEE
T ss_pred CCeEEEEECCCcceEehhcCC--CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC----CCCcCEE
Confidence 456888888887666554444 789999999865 564444 4688998998872 222111110 0122334
Q ss_pred EE-ECCeEEEEec--CCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeC--CeEEEEecCCcc-
Q 003205 139 VF-WGNGVVCVTE--ANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTD--AGILMLDEDGVQ- 212 (839)
Q Consensus 139 ~~-~~~G~v~~t~--~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d--~tv~l~~~~~~~- 212 (839)
.+ |.+|.++.+. ++.+..++ .++.....+....+ ..|..-++ .| .+..+...+.+ +.|+.++.+|..
T Consensus 83 avd~~~~~ly~~d~~~~~I~~~~-~~g~~~~~~~~~~~-~~P~~iav-dp----~~g~ly~~d~~~~~~I~~~~~dG~~~ 155 (316)
T 1ijq_A 83 AVDWIHSNIYWTDSVLGTVSVAD-TKGVKRKTLFRENG-SKPRAIVV-DP----VHGFMYWTDWGTPAKIKKGGLNGVDI 155 (316)
T ss_dssp EEETTTTEEEEEETTTTEEEEEE-TTSSSEEEEEECTT-CCEEEEEE-ET----TTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred EEeecCCeEEEEECCCCEEEEEe-CCCCceEEEEECCC-CCcceEEe-CC----CCCEEEEEccCCCCeEEEEcCCCCCe
Confidence 44 3455555553 33454433 33332333322122 34555444 32 55555555543 689999988864
Q ss_pred -c---ccCCCceEEEECCCCcEEEEee-cCCeEEEEecC
Q 003205 213 -K---VDDTLSQKMAVSPNGNFVACFT-HDGRLVVNNTN 246 (839)
Q Consensus 213 -~---~~~~~i~~ia~Spng~~iA~~~-~~g~i~i~ssd 246 (839)
. .....-..|+++|+++.|-... ..++|+.++.|
T Consensus 156 ~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 1 1233457999999876655443 34578888766
No 248
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=94.42 E-value=1.3 Score=53.03 Aligned_cols=182 Identities=14% Similarity=0.052 Sum_probs=95.8
Q ss_pred CEEEEc-CCCCeEEEEecCchhhhhhcccCCceEEEEcCCCC-c-ee-EEEecCCCCCeEEEeecCCCe-EEEEEeC---
Q 003205 36 NKVACA-PFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV-L-IS-ETVWKNPGGRLIGMSWSEDQT-LICVVQD--- 107 (839)
Q Consensus 36 ~~va~s-p~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~-l-l~-ti~~~~~~~~I~~~~fs~de~-Lv~v~~d--- 107 (839)
...++| |+|..||...+.. ++...+|++++..|. . +. .+.+. ..++.||||++ |+.+..|
T Consensus 177 ~~~~~S~PDG~~lAy~~~~~-------G~~~~~l~v~dl~~g~~~l~~~~~~~-----~~~~~WspDg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 177 MEVKPAPPEHDLVAFSVDMS-------GNEVYTIEFKRISDPSQTIADKVSGT-----NGEIVWGPDHTSLFYVTKDETL 244 (751)
T ss_dssp EEEEECTTTTCEEEEEEESS-------SSSCEEEEEEETTCTTCCCCCCEEEE-----CSCCEECSSTTEEEEEEECTTC
T ss_pred eeeEecCCCCCEEEEEEeCC-------CCceEEEEEEECCCCCEeCCccccCc-----eeeEEEecCCCEEEEEEECCCC
Confidence 357899 9999999987631 123457999997654 3 22 23332 23577999985 6666655
Q ss_pred --CeEEEEeCCCCccc--cCC--CCCccccccCeEEEEEECCeEEEE--ecC---CeEEEEecCCCc--eE--EEcCCCC
Q 003205 108 --GTVYRYNIHAELIE--PNA--SMGKECFEENVVECVFWGNGVVCV--TEA---NRYFCMADFATM--KV--CELARPE 172 (839)
Q Consensus 108 --Gtv~l~~~~G~~~~--~~~--g~~~~~~~~~V~~~~~~~~G~v~~--t~~---~~~~~v~~~~~~--~~--~~l~~~~ 172 (839)
..|+++++.+...+ ... .+ ..-...+.++++|..++ ..+ .++|.++ ..++ .. +.+...
T Consensus 245 ~~~~v~~~~lgt~~~~~~lv~~~~~-----~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d-~~~~~~~~~~~~l~~~- 317 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSEDVCLYEEHN-----PLFSAFMYKAADTNTLCIGSQSPETAEVHLLD-LRKGNAHNTLEIVRPR- 317 (751)
T ss_dssp CEEEEEEEETTSCGGGCEEEEECCC-----TTCEEEEEECTTSSEEEEEEECSSCEEEEEEE-SSSCTTCCCEEESSCC-
T ss_pred CCCEEEEEECCCCchhcEEEEecCC-----CceEEEEEECCCCCEEEEEecCCCCceEEEEE-CCCCCCCceeEEeecC-
Confidence 24666677654311 111 11 22345678888885433 222 2455443 4332 22 334320
Q ss_pred CCCCCceEEEeCCCCCCCCcEEEEEEeC-----CeEEEEecCC--c-cc-c--cCC--CceEEEECCCCc-EEEEeecCC
Q 003205 173 VEELPHCVAVIEPKYTMTGSVEVLIGTD-----AGILMLDEDG--V-QK-V--DDT--LSQKMAVSPNGN-FVACFTHDG 238 (839)
Q Consensus 173 ~~~~~~~w~vi~~~~S~~~~~~v~~s~d-----~tv~l~~~~~--~-~~-~--~~~--~i~~ia~Spng~-~iA~~~~~g 238 (839)
.....|.+- ++ +|+.+++.+.. ..|+.++.++ . .. . +.. .+..+++ +++ +++....+|
T Consensus 318 --~~~~~~s~~---~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g 389 (751)
T 2xe4_A 318 --EKGVRYDVQ---MH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRRAG 389 (751)
T ss_dssp --CTTCCEEEE---EE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEETT
T ss_pred --CCCceEEEe---ee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEEeCC
Confidence 112224331 00 37777777653 2678888763 2 12 1 111 2334444 444 455566677
Q ss_pred e--EEEEe
Q 003205 239 R--LVVNN 244 (839)
Q Consensus 239 ~--i~i~s 244 (839)
. |++++
T Consensus 390 ~~~l~~~d 397 (751)
T 2xe4_A 390 LTRIWTMM 397 (751)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 5 55555
No 249
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=94.00 E-value=2.9 Score=42.94 Aligned_cols=198 Identities=11% Similarity=0.135 Sum_probs=98.3
Q ss_pred CCeEEEeecCCC-eEE-EEEeCCeEEEEeCCCCcccc-CCCCCccccccCeEEEEEECCeEEEEec--CCeEEEEecCCC
Q 003205 88 GRLIGMSWSEDQ-TLI-CVVQDGTVYRYNIHAELIEP-NASMGKECFEENVVECVFWGNGVVCVTE--ANRYFCMADFAT 162 (839)
Q Consensus 88 ~~I~~~~fs~de-~Lv-~v~~dGtv~l~~~~G~~~~~-~~g~~~~~~~~~V~~~~~~~~G~v~~t~--~~~~~~v~~~~~ 162 (839)
+.+-++.|.|++ .|. +..+++.|..++..|+.... .++- ..+.-.+.+-++|.++++. +++++.+.--..
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g-----~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDF-----VKDLETIEYIGDNQFVISDERDYAIYVISLTPN 101 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSS-----CSSEEEEEECSTTEEEEEETTTTEEEEEEECTT
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCC-----CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence 679999999865 574 56667778888999998443 2321 1223344555766665553 345554431111
Q ss_pred ceE---EE--cC--CCCCCCCCceEEEeCCCCCCCCcEEEEEEeC-C-eEEEEec--CCcc-----------cccCCCce
Q 003205 163 MKV---CE--LA--RPEVEELPHCVAVIEPKYTMTGSVEVLIGTD-A-GILMLDE--DGVQ-----------KVDDTLSQ 220 (839)
Q Consensus 163 ~~~---~~--l~--~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d-~-tv~l~~~--~~~~-----------~~~~~~i~ 220 (839)
... .. ++ ..+.+......+ ++|+++.+.++... . .||.|+- .+.. ......+.
T Consensus 102 ~~i~~~~~~~~~~~~~~~N~g~EGLA-----~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 102 SEVKILKKIKIPLQESPTNCGFEGLA-----YSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp CCEEEEEEEECCCSSCCCSSCCEEEE-----EETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred CeeeeeeeeccccccccccCCcceEE-----EeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence 111 11 11 000111223333 33366666666553 3 5666651 1100 01222356
Q ss_pred EEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCcee-ee-cCceEEEEecCEEEEEcCCCCceEeccCCC
Q 003205 221 KMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIA-WC-GMDSVLLYWNDMLVMVAPQAEPVQYFYDEP 298 (839)
Q Consensus 221 ~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~-Wc-G~d~vv~~~~~~l~lig~~~~~v~f~~~~~ 298 (839)
.+++.|. +|+++|.|.. ++.|.++|... .+.+.. -- |... +.=.-|+.+-|.|..++.
T Consensus 177 ~l~~dp~---------tg~lliLS~~-s~~L~~~d~~g--~~~~~~~L~~g~~~--------l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 177 GAEFNQQ---------KNTLLVLSHE-SRALQEVTLVG--EVIGEMSLTKGSRG--------LSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp EEEEETT---------TTEEEEEETT-TTEEEEECTTC--CEEEEEECSTTGGG--------CSSCCCSEEEEEECTTCC
T ss_pred eEEEcCC---------CCeEEEEECC-CCeEEEEcCCC--CEEEEEEcCCccCC--------cccccCCCCeeEECCCCC
Confidence 6666664 4556666443 55555555431 111110 00 0000 000014556789988999
Q ss_pred eEEeecCCceEEEccCc
Q 003205 299 LVLIPECDGVRILSNSS 315 (839)
Q Consensus 299 ~~l~~E~DGvRIit~~~ 315 (839)
.++++|-+=+.+++..+
T Consensus 237 lyIvsE~n~~y~f~~~~ 253 (255)
T 3qqz_A 237 IYIVSEPNRFYRFTPQS 253 (255)
T ss_dssp EEEEETTTEEEEEEC--
T ss_pred EEEEcCCceEEEEEecC
Confidence 99999988777776653
No 250
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=93.91 E-value=5.8 Score=41.92 Aligned_cols=160 Identities=14% Similarity=0.094 Sum_probs=83.0
Q ss_pred CCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEE-eCCCCc-cccCCCCCccccccCeEEEEEECCeEEEEec-
Q 003205 74 AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRY-NIHAEL-IEPNASMGKECFEENVVECVFWGNGVVCVTE- 150 (839)
Q Consensus 74 ~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~-~~~G~~-~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~- 150 (839)
.|+--..+.-.. .+.+.++.|.+++.++++..+|.+..- |-.|+- .....+. ...+..+.+.++|.+++..
T Consensus 150 gG~tW~~~~~~~-~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~-----~~~~~~~~~~~~g~~~~~~~ 223 (327)
T 2xbg_A 150 SGKNWQALVQEA-IGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTT-----SRRLHNMGFTPDGRLWMIVN 223 (327)
T ss_dssp TTSSEEEEECSC-CCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCS-----SSCEEEEEECTTSCEEEEET
T ss_pred CCCCCEEeecCC-CcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCC-----CCccceeEECCCCCEEEEeC
Confidence 355544444322 267899999999998888888876544 332543 3333333 4456777777766655544
Q ss_pred CCeEEEEecCCCceEE-EcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc--cc-----cCCCceEE
Q 003205 151 ANRYFCMADFATMKVC-ELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--KV-----DDTLSQKM 222 (839)
Q Consensus 151 ~~~~~~v~~~~~~~~~-~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~--~~-----~~~~i~~i 222 (839)
++.++.-. -+....+ .+..+.+........+. +.+++. ++.++.+++++.-.-.|.. .. ....+..|
T Consensus 224 ~G~~~~s~-~D~G~tW~~~~~~~~~~~~~~~~v~---~~~~~~-~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~v 298 (327)
T 2xbg_A 224 GGKIAFSD-PDNSENWGELLSPLRRNSVGFLDLA---YRTPNE-VWLAGGAGALLCSQDGGQTWQQDVDVKKVPSNFYKI 298 (327)
T ss_dssp TTEEEEEE-TTEEEEECCCBCTTSSCCSCEEEEE---ESSSSC-EEEEESTTCEEEESSTTSSCEECGGGTTSSSCCCEE
T ss_pred CceEEEec-CCCCCeeEeccCCcccCCcceEEEE---ecCCCE-EEEEeCCCeEEEeCCCCcccEEcCccCCCCCCeEEE
Confidence 45544321 1111111 12211111111223331 233444 4445567777543333443 11 23568899
Q ss_pred EECCCCcEEEEeecCCeEEEEec
Q 003205 223 AVSPNGNFVACFTHDGRLVVNNT 245 (839)
Q Consensus 223 a~Spng~~iA~~~~~g~i~i~ss 245 (839)
+++++++.+ +.+.+|+|+-++.
T Consensus 299 ~~~~~~~~~-~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 299 LFFSPDQGF-ILGQKGILLRYVT 320 (327)
T ss_dssp EEEETTEEE-EECSTTEEEEECC
T ss_pred EEECCCceE-EEcCCceEEEEcC
Confidence 998776544 4466888766543
No 251
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=93.72 E-value=11 Score=42.47 Aligned_cols=83 Identities=13% Similarity=-0.084 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHh-CCChhh-HHHHhHhhhhhhcCCCChHHHHHHHHHHhccCC--CCCHHHHHHHHHHh
Q 003205 441 SVLIGRLINANCHLLALRISEYL-GMNQEV-VIMHWACSKITASLAIPDVTLLEILLDKLKLCK--GISYAAVAAHADKS 516 (839)
Q Consensus 441 ~~li~rL~~r~~~~lA~~I~~~l-~~~~~~-I~~~WA~~kI~~~~~~~D~~l~~~I~~kl~~~~--~is~~~IA~~A~~~ 516 (839)
..++..++..+.|..|+++.+-+ +..++. .+..-+..-. ... +-++ +..+.++....+ ...+..++..-.+.
T Consensus 88 ~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~-~~g--~~~~-A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (597)
T 2xpi_A 88 RLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYC-CTG--DYAR-AKCLLTKEDLYNRSSACRYLAAFCLVKL 163 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HTT--CHHH-HHHHHHHTCGGGTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHH-HcC--cHHH-HHHHHHHHhccccchhHHHHHHHHHHHH
Confidence 55788888999999999987643 333332 2211122211 112 1222 333334432112 24567778888999
Q ss_pred CcHHHHHHHHh
Q 003205 517 GRRKLAAMLVE 527 (839)
Q Consensus 517 gR~~LA~~Ll~ 527 (839)
|+.+-|..+++
T Consensus 164 g~~~~A~~~~~ 174 (597)
T 2xpi_A 164 YDWQGALNLLG 174 (597)
T ss_dssp TCHHHHHHHHC
T ss_pred hhHHHHHHHHh
Confidence 99999999998
No 252
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=93.67 E-value=4.7 Score=42.14 Aligned_cols=195 Identities=11% Similarity=0.003 Sum_probs=100.2
Q ss_pred CeEEEeecCCCe-EEEEEeCCeEEEEeCCCC-ccccCCCCCc--------------cccccCeEEEEEEC-CeEEEEe-c
Q 003205 89 RLIGMSWSEDQT-LICVVQDGTVYRYNIHAE-LIEPNASMGK--------------ECFEENVVECVFWG-NGVVCVT-E 150 (839)
Q Consensus 89 ~I~~~~fs~de~-Lv~v~~dGtv~l~~~~G~-~~~~~~g~~~--------------~~~~~~V~~~~~~~-~G~v~~t-~ 150 (839)
...++.|++++. +++...+|.|..|+..|. +..+...... ...-..+..+.+.+ +|.++++ .
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 456777998888 677778888999987664 4332211000 00012456677775 6766555 4
Q ss_pred CCeEEEEecCCCceEEEcCCCCCC---CCCceEEEeCCCCCC-CCcEEEEEEe-----------------CCeEEEEecC
Q 003205 151 ANRYFCMADFATMKVCELARPEVE---ELPHCVAVIEPKYTM-TGSVEVLIGT-----------------DAGILMLDED 209 (839)
Q Consensus 151 ~~~~~~v~~~~~~~~~~l~~~~~~---~~~~~w~vi~~~~S~-~~~~~v~~s~-----------------d~tv~l~~~~ 209 (839)
...++.++ ..+.....+.....+ ..|.... +++ +|...+.-.. ++.|+.++..
T Consensus 100 ~~~i~~~d-~~~g~~~~~~~~~~~~~~~~p~~i~-----~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 100 YYHLSVVG-SEGGHATQLATSVDGVPFKWLYAVT-----VDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp TTEEEEEC-TTCEECEEEESEETTEECSCEEEEE-----ECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred CCCEEEEe-CCCCEEEEecccCCCCcccccceEE-----EecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 44465554 222222333221000 1123222 234 5554433211 2568888876
Q ss_pred Ccc----cccCCCceEEEECCCCcEEEEe-ecCCeEEEEecCCC--CccccccCCCCCCCCceeeecCceEEE-Eec---
Q 003205 210 GVQ----KVDDTLSQKMAVSPNGNFVACF-THDGRLVVNNTNFS--SPVIDESCESALPPEQIAWCGMDSVLL-YWN--- 278 (839)
Q Consensus 210 ~~~----~~~~~~i~~ia~Spng~~iA~~-~~~g~i~i~ssd~~--~~l~e~~~~~~~~p~~~~WcG~d~vv~-~~~--- 278 (839)
+.. ......-..|++||+|+++-.. +.++.|++++.+-. .....+.. ... |..|+.-.+..+.+ .+.
T Consensus 174 ~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~~~~~ 251 (322)
T 2fp8_A 174 TKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEELD 251 (322)
T ss_dssp TTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEEEETT
T ss_pred CCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEecCccc
Confidence 332 1111223689999999865544 45578888875521 11111211 123 77776665444433 233
Q ss_pred --------CEEEEEcCCCCce
Q 003205 279 --------DMLVMVAPQAEPV 291 (839)
Q Consensus 279 --------~~l~lig~~~~~v 291 (839)
..+..+.|.+..+
T Consensus 252 ~~~~~~~~~~v~~~d~~G~~~ 272 (322)
T 2fp8_A 252 GNMHGRVDPKGIKFDEFGNIL 272 (322)
T ss_dssp SSTTSCEEEEEEEECTTSCEE
T ss_pred ccccCCCccEEEEECCCCCEE
Confidence 3477777776633
No 253
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=93.65 E-value=9.9 Score=41.49 Aligned_cols=169 Identities=9% Similarity=-0.024 Sum_probs=94.1
Q ss_pred CceEEEEcCCCCceeEEEecCCCCCeEEEeecCCC-eEEEEE-eCCeEEEEeCCCCc----cccCCCCCccccccCeEEE
Q 003205 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQ-TLICVV-QDGTVYRYNIHAEL----IEPNASMGKECFEENVVEC 138 (839)
Q Consensus 65 ~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de-~Lv~v~-~dGtv~l~~~~G~~----~~~~~g~~~~~~~~~V~~~ 138 (839)
...|+..+.+|.....+.-.. +.+++|+|.+.+ .|..+. .++.|+.+++.|.. .+...... ......+
T Consensus 91 ~~~I~~i~l~~~~~~~~~~~~--~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~----~~~p~gl 164 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLIPNL--RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD----IQAPDGL 164 (400)
T ss_dssp TTEEEEECTTSCSCEEEECSC--SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS----CSCEEEE
T ss_pred cceeEEEccCCcceeEecccc--CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC----CCCcccE
Confidence 578999999988777665443 789999999854 564443 56788888887732 11121110 1123344
Q ss_pred EEE-CCeEEEEecC--CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe--CCeEEEEecCCcc-
Q 003205 139 VFW-GNGVVCVTEA--NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT--DAGILMLDEDGVQ- 212 (839)
Q Consensus 139 ~~~-~~G~v~~t~~--~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~--d~tv~l~~~~~~~- 212 (839)
.+- -+|.++.+.. +.+. +-+.++.....+....+ ..|...+|-+ .+..+..... .+.|+..+.+|..
T Consensus 165 avD~~~~~lY~~d~~~~~I~-~~~~~g~~~~~l~~~~~-~~P~~iavdp-----~~g~ly~td~~~~~~I~~~~~dG~~~ 237 (400)
T 3p5b_L 165 AVDWIHSNIYWTDSVLGTVS-VADTKGVKRKTLFRENG-SKPRAIVVDP-----VHGFMYWTDWGTPAKIKKGGLNGVDI 237 (400)
T ss_dssp EEETTTTEEEEEETTTTEEE-EECTTTCSEEEEEECSS-CCEEEEEEET-----TTTEEEEEECSSSCCEEEEETTSCSC
T ss_pred EEEecCCceEEEECCCCeEE-EEeCCCCceEEEEeCCC-CCcceEEEec-----ccCeEEEEeCCCCCEEEEEeCCCCcc
Confidence 443 3555555532 2343 33344333333322122 3465554433 4555555443 3689999988864
Q ss_pred -c---ccCCCceEEEECCCCcEEEEee-cCCeEEEEecC
Q 003205 213 -K---VDDTLSQKMAVSPNGNFVACFT-HDGRLVVNNTN 246 (839)
Q Consensus 213 -~---~~~~~i~~ia~Spng~~iA~~~-~~g~i~i~ssd 246 (839)
. .....-..|+++|+++.|-... ..++|+..+.|
T Consensus 238 ~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 238 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 1 1223457999999877665543 34568777765
No 254
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=93.56 E-value=7.7 Score=46.58 Aligned_cols=166 Identities=8% Similarity=-0.010 Sum_probs=89.7
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCc----eeEEEecCCCCCeEEEeecCCC-eEE-EEEeCC
Q 003205 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVL----ISETVWKNPGGRLIGMSWSEDQ-TLI-CVVQDG 108 (839)
Q Consensus 35 ~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~l----l~ti~~~~~~~~I~~~~fs~de-~Lv-~v~~dG 108 (839)
.+..-+...+.++|+.-+...-..+-.+...+.|..++.+|.. ..++.... .....+|++.+.+ .|. +=..++
T Consensus 415 ~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~-l~~P~GLAvD~~~~~LY~tD~~~~ 493 (791)
T 3m0c_C 415 EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVDWIHSNIYWTDSVLG 493 (791)
T ss_dssp CCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS-CSCCCEEEEETTTTEEEEEETTTT
T ss_pred cceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecC-CCCcceeeeeecCCcEEEEecCCC
Confidence 3444455666777776653211111112345778888888742 23333222 2566777777655 564 445678
Q ss_pred eEEEEeCCCCccccCCCCCccccccCeEEEEEEC-CeEEEEecC---CeEEEEecCCCceEEEcCCCCCCCCCceEEEeC
Q 003205 109 TVYRYNIHAELIEPNASMGKECFEENVVECVFWG-NGVVCVTEA---NRYFCMADFATMKVCELARPEVEELPHCVAVIE 184 (839)
Q Consensus 109 tv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~---~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~ 184 (839)
.|.+.++.|...+...... -.....+.+.+ +|.++.|.. .+|+.+ +.++.....+....+ ..|...++-+
T Consensus 494 ~I~v~~ldG~~~~~l~~~~----l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~-~~dG~~~~~lv~~~l-~~P~GLavD~ 567 (791)
T 3m0c_C 494 TVSVADTKGVKRKTLFREN----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKG-GLNGVDIYSLVTENI-QWPNGITLDL 567 (791)
T ss_dssp EEEEEETTSSSEEEEEECT----TCCEEEEEEETTTTEEEEEECSSSCEEEEE-ETTSCCEEEEECSSC-SCEEEEEEET
T ss_pred eEEEEeCCCCeEEEEEeCC----CCCcceEEEecCCCCEEEecCCCCCeEEEE-ecCCCceEEEEeCCC-CCceEEEEec
Confidence 8999999998755443221 22356677765 677777753 234433 344444344433222 3455554422
Q ss_pred CCCCCCCcEEEEEEe-CCeEEEEecCCcc
Q 003205 185 PKYTMTGSVEVLIGT-DAGILMLDEDGVQ 212 (839)
Q Consensus 185 ~~~S~~~~~~v~~s~-d~tv~l~~~~~~~ 212 (839)
.++.+..+.. .+.|..++.+|..
T Consensus 568 -----~~~~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 568 -----LSGRLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp -----TTTEEEEEETTTTEEEEEETTSCS
T ss_pred -----CCCeEEEEeCCCCcEEEEecCCCc
Confidence 4455544443 6688888888764
No 255
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=93.53 E-value=3.3 Score=45.90 Aligned_cols=150 Identities=12% Similarity=0.121 Sum_probs=85.8
Q ss_pred CEEEEcC-CCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEeC----C-
Q 003205 36 NKVACAP-FGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQD----G- 108 (839)
Q Consensus 36 ~~va~sp-~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~d----G- 108 (839)
..++++| ++|-|-++. ..+.|+.++..|..+.++.-.. ....+++|++++. |.+.... +
T Consensus 140 ~~lavdp~~~g~Lyv~d------------~~~~I~~id~~~~~v~~~~~~~--~~P~~ia~d~~G~~lyvad~~~~~~~~ 205 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVG------------EQHPTRLIDFEKEYVSTVYSGL--SKVRTICWTHEADSMIITNDQNNNDRP 205 (430)
T ss_dssp CEEEEETTEEEEEEEEE------------BTEEEEEEETTTTEEEEEECCC--SCEEEEEECTTSSEEEEEECCSCTTSE
T ss_pred CEEEECCCCCCeEEEEe------------CCCcEEEEECCCCEEEEEecCC--CCcceEEEeCCCCEEEEEeCCCCcccc
Confidence 4678887 455555543 1278999999998888775433 7799999999998 5444431 1
Q ss_pred eEEEEeCCCCccc-cCCCCCccccccCeEEEEEEC-CeEEEEec--CCeEEEEecCCCceEEEcCCCCCCCCCceEEEeC
Q 003205 109 TVYRYNIHAELIE-PNASMGKECFEENVVECVFWG-NGVVCVTE--ANRYFCMADFATMKVCELARPEVEELPHCVAVIE 184 (839)
Q Consensus 109 tv~l~~~~G~~~~-~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~--~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~ 184 (839)
.+..++..|.+.. ..+.. -.....+.+.+ +|.++++. +++++.++- ++.....+...+....|...+
T Consensus 206 ~v~~~~~~g~~~~~~~l~~-----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~-~~~~~~~~~~~~~~~~P~gia--- 276 (430)
T 3tc9_A 206 NNYILTRESGFKVITELTK-----GQNCNGAETHPINGELYFNSWNAGQVFRYDF-TTQETTPLFTIQDSGWEFHIQ--- 276 (430)
T ss_dssp EEEEEEGGGTSCSEEEEEE-----CSSCCCEEECTTTCCEEEEETTTTEEEEEET-TTTEEEEEEECSSSSCCEEEE---
T ss_pred eEEEEeCCCceeeeeeecc-----CCCceEEEEeCCCCEEEEEECCCCEEEEEEC-CCCcEEEEEEcCCCCcceeEE---
Confidence 3444566776531 01100 11123456677 78777764 456666653 233322222111112354432
Q ss_pred CCCCCCCcEEEEEE-eCCeEEEEecCC
Q 003205 185 PKYTMTGSVEVLIG-TDAGILMLDEDG 210 (839)
Q Consensus 185 ~~~S~~~~~~v~~s-~d~tv~l~~~~~ 210 (839)
++|+|+.+..+. .++.|+.++.++
T Consensus 277 --~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 277 --FHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp --ECTTSSEEEEEETTTTEEEEEEEET
T ss_pred --EcCCCCEEEEEECCCCEEEEEeCCc
Confidence 344888555444 478888887765
No 256
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=93.52 E-value=8.2 Score=40.73 Aligned_cols=196 Identities=9% Similarity=-0.053 Sum_probs=103.2
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCce-eEEEecCCCCCeEEEeecC-CCeEE-EEEeCCeEEEE
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLI-SETVWKNPGGRLIGMSWSE-DQTLI-CVVQDGTVYRY 113 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll-~ti~~~~~~~~I~~~~fs~-de~Lv-~v~~dGtv~l~ 113 (839)
.+.+..-+.++|+.-|+..-..+=.+...+.|..++.+|... .++.... .....++++.+ ++.|. +-..++.|.++
T Consensus 28 ~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~-l~~p~glavd~~~g~ly~~d~~~~~I~~~ 106 (318)
T 3sov_A 28 TIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-LLSPDGLACDWLGEKLYWTDSETNRIEVS 106 (318)
T ss_dssp EEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC-CSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC-CCCccEEEEEcCCCeEEEEECCCCEEEEE
Confidence 333444445677765532111111123567899999888742 2222222 24566777776 56664 44567789999
Q ss_pred eCCCCccccCCCCCccccccCeEEEEEEC-CeEEEEec---CCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCC
Q 003205 114 NIHAELIEPNASMGKECFEENVVECVFWG-NGVVCVTE---ANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTM 189 (839)
Q Consensus 114 ~~~G~~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~---~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~ 189 (839)
++.|...+...... -..-..+.+-+ +|.++.|. ..+++.+. .++.....+....+ ..|...++ ++
T Consensus 107 ~~dG~~~~~l~~~~----~~~P~giavdp~~g~ly~td~~~~~~I~r~~-~dG~~~~~~~~~~l-~~Pnglav-----d~ 175 (318)
T 3sov_A 107 NLDGSLRKVLFWQE----LDQPRAIALDPSSGFMYWTDWGEVPKIERAG-MDGSSRFIIINSEI-YWPNGLTL-----DY 175 (318)
T ss_dssp ETTSCSCEEEECSS----CSSEEEEEEEGGGTEEEEEECSSSCEEEEEE-TTSCSCEEEECSSC-SCEEEEEE-----ET
T ss_pred ECCCCcEEEEEeCC----CCCccEEEEeCCCCEEEEEecCCCCEEEEEE-cCCCCeEEEEECCC-CCccEEEE-----ec
Confidence 99998754333211 22345666765 67777775 23555553 33322223322122 33444433 33
Q ss_pred CCcEEEEEEe-CCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCCeEEEEec
Q 003205 190 TGSVEVLIGT-DAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNT 245 (839)
Q Consensus 190 ~~~~~v~~s~-d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ss 245 (839)
++..+..++. .+.|+.++.+|.. ......-..|++..++ ...+-..++.|..++.
T Consensus 176 ~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~-lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 176 EEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDI-LYWTDWSTHSILACNK 236 (318)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTE-EEEEETTTTEEEEEET
T ss_pred cCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCE-EEEEecCCCeEEEEEC
Confidence 5666655554 6788889888754 1122233466665432 2222334556666665
No 257
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=93.47 E-value=2.5 Score=47.09 Aligned_cols=176 Identities=13% Similarity=0.068 Sum_probs=102.1
Q ss_pred CCceEEEEcCC-C----CceeEEE---e--cCCCCCeEEEeecCCCeEEEEEeC------CeEEEEeCC-CCccccCC-C
Q 003205 64 ALRKLRIFNSA-G----VLISETV---W--KNPGGRLIGMSWSEDQTLICVVQD------GTVYRYNIH-AELIEPNA-S 125 (839)
Q Consensus 64 ~~~~I~iy~~~-G----~ll~ti~---~--~~~~~~I~~~~fs~de~Lv~v~~d------Gtv~l~~~~-G~~~~~~~-g 125 (839)
..+.|.|++.. - +++.+|. . ..-......+..+|+|-.|+...+ |.+.++|.. ++...... +
T Consensus 104 ~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~ 183 (462)
T 2ece_A 104 RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEID 183 (462)
T ss_dssp TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSB
T ss_pred CCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccC
Confidence 46889999963 3 5666773 1 110036788899999943677777 789999865 66543322 2
Q ss_pred CCccccccCeEEEEEECCeEEEEecC--------------------CeEEEEecCCCceE-EEcCCCCCCCCCceEEEeC
Q 003205 126 MGKECFEENVVECVFWGNGVVCVTEA--------------------NRYFCMADFATMKV-CELARPEVEELPHCVAVIE 184 (839)
Q Consensus 126 ~~~~~~~~~V~~~~~~~~G~v~~t~~--------------------~~~~~v~~~~~~~~-~~l~~~~~~~~~~~w~vi~ 184 (839)
... +.--.++.+.++|-++++++ ++-..++++++.+. ..+.-...+..|.. +.
T Consensus 184 ~~~---~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~---i~ 257 (462)
T 2ece_A 184 RGD---QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALE---LR 257 (462)
T ss_dssp CTT---CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEE---EE
T ss_pred CCC---ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccce---eE
Confidence 110 11123566778888888875 45555666654332 22221000012222 22
Q ss_pred CCCCCCCcEEEEEE------eCCeEEEEecCCcc------------c----c---c------CCCceEEEECCCCcEEEE
Q 003205 185 PKYTMTGSVEVLIG------TDAGILMLDEDGVQ------------K----V---D------DTLSQKMAVSPNGNFVAC 233 (839)
Q Consensus 185 ~~~S~~~~~~v~~s------~d~tv~l~~~~~~~------------~----~---~------~~~i~~ia~Spng~~iA~ 233 (839)
..|+|+|....++. .+++|.+|..++.. . . . ......|.+||||++|-.
T Consensus 258 f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYV 337 (462)
T 2ece_A 258 PLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYL 337 (462)
T ss_dssp ECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEE
T ss_pred eeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEE
Confidence 35688998776655 35577664432210 0 0 0 234689999999999877
Q ss_pred eec-CCeEEEEec
Q 003205 234 FTH-DGRLVVNNT 245 (839)
Q Consensus 234 ~~~-~g~i~i~ss 245 (839)
.+. .+.|.+++.
T Consensus 338 Snrg~d~VavfdV 350 (462)
T 2ece_A 338 SLWGIGEVRQYDI 350 (462)
T ss_dssp EETTTTEEEEEEC
T ss_pred EeCCCCEEEEEEe
Confidence 765 567888875
No 258
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.25 E-value=0.62 Score=51.31 Aligned_cols=118 Identities=13% Similarity=0.220 Sum_probs=67.9
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhh-hh-c-cc-------CCceEEEEcCCCCceeEEEecCCCCCeEEEeecC----CC
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQ-LY-A-ES-------ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSE----DQ 99 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~-~~-~-~~-------~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~----de 99 (839)
....+..+|+|..+|+..+..-.|. +- . .. ..-..+-|+..... .. +..+|..+-|.| +.
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~-----~~-~~s~I~qVlWHPl~~~ds 140 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEE-----VG-PKSSIKKVLFHPKSYRDS 140 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--------CCCCEEEEEECTTBGGGC
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcc-----cC-CCCceeEEEeccccCCCC
Confidence 4457999999999999974321111 10 0 00 01123334332211 00 126688888887 45
Q ss_pred eEEEEEeCCeEEEEeCCCCc---c---cc--CCCCCccccccCeEEEEEECCeEEEEe----cCCeEEEEec
Q 003205 100 TLICVVQDGTVYRYNIHAEL---I---EP--NASMGKECFEENVVECVFWGNGVVCVT----EANRYFCMAD 159 (839)
Q Consensus 100 ~Lv~v~~dGtv~l~~~~G~~---~---~~--~~g~~~~~~~~~V~~~~~~~~G~v~~t----~~~~~~~v~~ 159 (839)
.||++++|++||+|++.-.+ . +. .+|.+. ....|.++.|.++|+.+-. .+|++|.+--
T Consensus 141 ~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~--~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlcP 210 (452)
T 3pbp_A 141 CIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDA--RVNDITDLEFSKDGLTLYCLNTTEGGDIFAFYP 210 (452)
T ss_dssp EEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCS--SCCCEEEEEECTTSSCEEEEECTTSCEEEEESS
T ss_pred eEEEEecCCEEEEEEcccCCCCCcchhccccccCCCc--ccceEEEEEEcCCCcEEEEEecCCCCCEEEECC
Confidence 79999999999999875311 1 10 012111 1467888999888876533 4578877653
No 259
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=92.32 E-value=1.4 Score=49.08 Aligned_cols=146 Identities=12% Similarity=0.148 Sum_probs=83.5
Q ss_pred CCeEEEeecC--CCeEEEEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEECCeE-EEEecC-----C-eEEEEe
Q 003205 88 GRLIGMSWSE--DQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGV-VCVTEA-----N-RYFCMA 158 (839)
Q Consensus 88 ~~I~~~~fs~--de~Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~-v~~t~~-----~-~~~~v~ 158 (839)
....++.|+| ++.|.++...+.|+.+++.|...+..... ......+.+.++|- ++++.. . .++.+.
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~-----~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG-----LSKVRTICWTHEADSMIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC-----CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC-----CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence 4668999997 36677777768899999887654433322 33456778888775 555543 1 233332
Q ss_pred cCCCce-EEEcCCCCCCCCCceEEEeCCCCCC-CCcEEEEEEeCCeEEEEecCCcc-----cc-cCCCceEEEECCCCcE
Q 003205 159 DFATMK-VCELARPEVEELPHCVAVIEPKYTM-TGSVEVLIGTDAGILMLDEDGVQ-----KV-DDTLSQKMAVSPNGNF 230 (839)
Q Consensus 159 ~~~~~~-~~~l~~~~~~~~~~~w~vi~~~~S~-~~~~~v~~s~d~tv~l~~~~~~~-----~~-~~~~i~~ia~Spng~~ 230 (839)
.-.... ...+.. + ..|+..++ +| +|.+.+.-..++.|+.++.++.. .. ....-..|+|+|+|++
T Consensus 212 ~~g~~~~~~~l~~--~-~~p~giav-----dp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ 283 (430)
T 3tc9_A 212 RESGFKVITELTK--G-QNCNGAET-----HPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNY 283 (430)
T ss_dssp GGGTSCSEEEEEE--C-SSCCCEEE-----CTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSE
T ss_pred CCCceeeeeeecc--C-CCceEEEE-----eCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCE
Confidence 211111 122221 1 34555443 23 44433333347889999987543 11 1123468999999994
Q ss_pred E-EEeecCCeEEEEecC
Q 003205 231 V-ACFTHDGRLVVNNTN 246 (839)
Q Consensus 231 i-A~~~~~g~i~i~ssd 246 (839)
| .+-..++.|+.++.|
T Consensus 284 lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 284 AYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEEETTTTEEEEEEEE
T ss_pred EEEEECCCCEEEEEeCC
Confidence 4 333456778887655
No 260
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=92.28 E-value=1.9 Score=51.09 Aligned_cols=169 Identities=9% Similarity=0.031 Sum_probs=88.5
Q ss_pred CceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEE-EeCCeEEEEeCCCC----ccccCCCCCccccccCeEEE
Q 003205 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICV-VQDGTVYRYNIHAE----LIEPNASMGKECFEENVVEC 138 (839)
Q Consensus 65 ~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v-~~dGtv~l~~~~G~----~~~~~~g~~~~~~~~~V~~~ 138 (839)
...|+..+..|.....+.-.. ..+.+++|.+++. |.++ ..++.|+.+++.|. ......... -.....+
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~--~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~----~~~P~gl 458 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNL--RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD----IQAPDGL 458 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCC--TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSC----C--CCCE
T ss_pred ccceEEEeCCCCcceeeeccC--cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCC----CCCcceE
Confidence 467888888876655543333 6788999998654 5433 34678888888762 221111110 0011122
Q ss_pred EE-ECCeEEEEec--CCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe--CCeEEEEecCCcc-
Q 003205 139 VF-WGNGVVCVTE--ANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT--DAGILMLDEDGVQ- 212 (839)
Q Consensus 139 ~~-~~~G~v~~t~--~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~--d~tv~l~~~~~~~- 212 (839)
.+ |.+|.++++. ++.++.++ .++.....+....+ ..|...+| .| .+..+..... .+.|+.++.+|..
T Consensus 459 avD~~~g~LY~tD~~~~~I~v~d-~dg~~~~~l~~~~~-~~P~giav-Dp----~~g~ly~td~~~~~~I~~~~~dG~~~ 531 (699)
T 1n7d_A 459 AVDWIHSNIYWTDSVLGTVSVAD-TKGVKRKTLFREQG-SKPRAIVV-DP----VHGFMYWTDWGTPAKIKKGGLNGVDI 531 (699)
T ss_dssp ECCCSSSBCEECCTTTSCEEEEB-SSSCCEEEECCCSS-CCCCCEEC-CS----SSSCCEECCCSSSCCEEBCCSSSCCC
T ss_pred EEEeeCCcEEEEeccCCeEEEEe-cCCCceEEEEeCCC-CCcceEEE-cc----CCCcEEEcccCCCCeEEEEeCCCCCe
Confidence 33 3455555553 33454443 33333333333222 34554433 22 4454444443 2688888888754
Q ss_pred -c---ccCCCceEEEECCCCcEEEEee-cCCeEEEEecC
Q 003205 213 -K---VDDTLSQKMAVSPNGNFVACFT-HDGRLVVNNTN 246 (839)
Q Consensus 213 -~---~~~~~i~~ia~Spng~~iA~~~-~~g~i~i~ssd 246 (839)
. .....-..|+++|+++.|-... ..++|++++.+
T Consensus 532 ~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 532 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 570 (699)
T ss_dssp CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence 1 1223346899999866543332 34567777655
No 261
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=92.07 E-value=5 Score=47.29 Aligned_cols=57 Identities=19% Similarity=0.138 Sum_probs=43.4
Q ss_pred CeEEEEecCC-cc---cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCC
Q 003205 201 AGILMLDEDG-VQ---KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCE 257 (839)
Q Consensus 201 ~tv~l~~~~~-~~---~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~ 257 (839)
++|+.||... .. .....++....+++.|..+...+.+|++++++..-++.+.++.+.
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 517 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG 517 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence 6788898764 32 223455666778888888888899999999998878888777655
No 262
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=91.98 E-value=7.1 Score=40.16 Aligned_cols=163 Identities=10% Similarity=-0.014 Sum_probs=96.1
Q ss_pred CceeEEEecCCCCCeEEEeecCCCeE-EEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCCe
Q 003205 76 VLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR 153 (839)
Q Consensus 76 ~ll~ti~~~~~~~~I~~~~fs~de~L-v~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~ 153 (839)
+.+.+++.+. ..-.-++.|+ ++.| ++...+|.|+.+|+ .|+.....++. ..--..+.+.++-+.++|-..+
T Consensus 44 ~Vv~~~phd~-~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~-----~~FgeGit~~g~~Ly~ltw~~~ 116 (268)
T 3nok_A 44 HIIREYPHAT-NAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMERLG-----NIFAEGLASDGERLYQLTWTEG 116 (268)
T ss_dssp EEEEEEECCT-TCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEECT-----TCCEEEEEECSSCEEEEESSSC
T ss_pred EEEEEEcCCC-ccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEECCC-----CcceeEEEEeCCEEEEEEccCC
Confidence 6788888765 2446888898 4676 67778889999986 57774333433 1111224556666666665444
Q ss_pred EEEEecCCCc-eEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----c--ccCCC---ceEE
Q 003205 154 YFCMADFATM-KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----K--VDDTL---SQKM 222 (839)
Q Consensus 154 ~~~v~~~~~~-~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~--~~~~~---i~~i 222 (839)
...+-+.++. ...+++- .+..|.+-+ ||+.++..+.+++|+.+|..... . ....+ .+.+
T Consensus 117 ~v~V~D~~Tl~~~~ti~~-----~~eGwGLt~-----Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeL 186 (268)
T 3nok_A 117 LLFTWSGMPPQRERTTRY-----SGEGWGLCY-----WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINEL 186 (268)
T ss_dssp EEEEEETTTTEEEEEEEC-----SSCCCCEEE-----ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred EEEEEECCcCcEEEEEeC-----CCceeEEec-----CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccccc
Confidence 3334444332 2334432 344575542 78776666668899999977643 1 11222 3445
Q ss_pred EECCCCcEEEEeecCCeEEEEecCCCCccccccC
Q 003205 223 AVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESC 256 (839)
Q Consensus 223 a~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~ 256 (839)
.+. +|+.-|-.-.+.+|.+++..-++++..++.
T Consensus 187 e~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 187 ECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp EEE-TTEEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred EEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence 554 776555444566788887776776655553
No 263
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=91.87 E-value=8.6 Score=39.89 Aligned_cols=197 Identities=13% Similarity=0.041 Sum_probs=102.4
Q ss_pred CCceeEEEecCCCCCeEEEeecCCCeEEEEE-eCCeEEEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEec--C
Q 003205 75 GVLISETVWKNPGGRLIGMSWSEDQTLICVV-QDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTE--A 151 (839)
Q Consensus 75 G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~-~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~--~ 151 (839)
.+.+.+++. . ....++.|++++.|.++. .++.|..|+..|+.....- . ...+..+.+.++|.++++. .
T Consensus 22 ~~~~~~~p~-~--~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~-~-----~~~p~gia~~~dG~l~vad~~~ 92 (306)
T 2p4o_A 22 AKIITSFPV-N--TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHAT-V-----EGKVSGLAFTSNGDLVATGWNA 92 (306)
T ss_dssp EEEEEEECT-T--CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEE-C-----SSEEEEEEECTTSCEEEEEECT
T ss_pred ceEeEeCCC-C--CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEe-C-----CCCceeEEEcCCCcEEEEeccC
Confidence 445555543 2 467889999999986665 7889999999887643221 1 2235667777777666664 2
Q ss_pred C--eEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEE-eCCeEEEEecCCcc---c---------c--
Q 003205 152 N--RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIG-TDAGILMLDEDGVQ---K---------V-- 214 (839)
Q Consensus 152 ~--~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s-~d~tv~l~~~~~~~---~---------~-- 214 (839)
. .++.+..- +.....+...+....+..-++ .+++ ...... .++.|+.++..+.. . .
T Consensus 93 ~~~~v~~~d~~-~g~~~~~~~~~~~~~~~g~~~-----~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~ 165 (306)
T 2p4o_A 93 DSIPVVSLVKS-DGTVETLLTLPDAIFLNGITP-----LSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSE 165 (306)
T ss_dssp TSCEEEEEECT-TSCEEEEEECTTCSCEEEEEE-----SSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTT
T ss_pred CcceEEEEcCC-CCeEEEEEeCCCccccCcccc-----cCCC-cEEEEECCCCeEEEEeCCCCcEeEEEECCcccccccc
Confidence 1 35555422 223333332111111222222 1133 333333 37888988876421 0 0
Q ss_pred -cCCCceEEEECCCCcEEEEe-ecCCeEEEEecCCCCccccccC-CCCCCCCceeeecCceEEEE-e-cCEEEEEcCCCC
Q 003205 215 -DDTLSQKMAVSPNGNFVACF-THDGRLVVNNTNFSSPVIDESC-ESALPPEQIAWCGMDSVLLY-W-NDMLVMVAPQAE 289 (839)
Q Consensus 215 -~~~~i~~ia~Spng~~iA~~-~~~g~i~i~ssd~~~~l~e~~~-~~~~~p~~~~WcG~d~vv~~-~-~~~l~lig~~~~ 289 (839)
....-..| ||+|+++-.. +.+++|++++.+-...+..... .....|..|+...+..+.+. | ++.|..+.|.+.
T Consensus 166 ~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~ 243 (306)
T 2p4o_A 166 SVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS 243 (306)
T ss_dssp CCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred CCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCCCC
Confidence 01122345 8888755433 3456788887652111111100 00135777777654444332 3 346777777765
No 264
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=91.61 E-value=15 Score=38.59 Aligned_cols=191 Identities=11% Similarity=0.005 Sum_probs=98.0
Q ss_pred CceEEEEcCCCCc-eeEEEecCCCCCeEEEeecCC-CeEEEE-EeCCeEEEEeCCCCcc-ccCCCCCccccccCeEEEEE
Q 003205 65 LRKLRIFNSAGVL-ISETVWKNPGGRLIGMSWSED-QTLICV-VQDGTVYRYNIHAELI-EPNASMGKECFEENVVECVF 140 (839)
Q Consensus 65 ~~~I~iy~~~G~l-l~ti~~~~~~~~I~~~~fs~d-e~Lv~v-~~dGtv~l~~~~G~~~-~~~~g~~~~~~~~~V~~~~~ 140 (839)
...|+..+.+|.. ..++.... ....++++|.+. +.|..+ ..++.|..+++.|... +...... -.....+.+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~----l~~p~glav 86 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG----LLSPDGLAC 86 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC----CSCCCEEEE
T ss_pred cCeEEEEECCCCceEEEEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC----CCCccEEEE
Confidence 5778999988874 22222222 157899999985 456433 4567888888887632 1111000 011122333
Q ss_pred -ECCeEEEEecC--CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe--CCeEEEEecCCcc--c
Q 003205 141 -WGNGVVCVTEA--NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT--DAGILMLDEDGVQ--K 213 (839)
Q Consensus 141 -~~~G~v~~t~~--~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~--d~tv~l~~~~~~~--~ 213 (839)
|.+|.++.+.. +.+..+ +.++.....+....+ ..|...++-+ .+..+..... .+.|+.++.+|.. .
T Consensus 87 d~~~g~ly~~d~~~~~I~~~-~~dG~~~~~l~~~~~-~~P~giavdp-----~~g~ly~td~~~~~~I~r~~~dG~~~~~ 159 (318)
T 3sov_A 87 DWLGEKLYWTDSETNRIEVS-NLDGSLRKVLFWQEL-DQPRAIALDP-----SSGFMYWTDWGEVPKIERAGMDGSSRFI 159 (318)
T ss_dssp ETTTTEEEEEETTTTEEEEE-ETTSCSCEEEECSSC-SSEEEEEEEG-----GGTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred EcCCCeEEEEECCCCEEEEE-ECCCCcEEEEEeCCC-CCccEEEEeC-----CCCEEEEEecCCCCEEEEEEcCCCCeEE
Confidence 23555555532 234333 333322223322122 3455544432 4455544442 5789999988764 1
Q ss_pred ---ccCCCceEEEECCCCcEEEEee-cCCeEEEEecCCCCccccccCCCCCCCCceeee
Q 003205 214 ---VDDTLSQKMAVSPNGNFVACFT-HDGRLVVNNTNFSSPVIDESCESALPPEQIAWC 268 (839)
Q Consensus 214 ---~~~~~i~~ia~Spng~~iA~~~-~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~Wc 268 (839)
.....-..|+++|+++.|-... ..+.|+.++.|- .....+-......|..|+-.
T Consensus 160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P~glav~ 217 (318)
T 3sov_A 160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHPFALTLF 217 (318)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSCCSCEEEEEEE
T ss_pred EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC-CceEEEecCCCCCceEEEEe
Confidence 1223347999999776654433 345688777652 22212211123356666654
No 265
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=91.61 E-value=6.7 Score=45.71 Aligned_cols=196 Identities=9% Similarity=-0.059 Sum_probs=97.1
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCce-eEEEecCCCCCeEEEeecC-CCeEE-EEEeCCeEEEE
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLI-SETVWKNPGGRLIGMSWSE-DQTLI-CVVQDGTVYRY 113 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll-~ti~~~~~~~~I~~~~fs~-de~Lv-~v~~dGtv~l~ 113 (839)
...++.-++|+|+.-+...-..+=.+...+.|..++.+|... .++.-.. .....++++.+ ++.|. +=..++.|.+.
T Consensus 33 ~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~-~~~P~GlAvD~~~~~ly~~d~~~~~I~v~ 111 (619)
T 3s94_A 33 TIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-LLSPDGLACDWLGEKLYWTDSETNRIEVS 111 (619)
T ss_dssp ---CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCC-CCCcCeEEEEecCCEEEEEeCCCCEEEEE
Confidence 334455556666654432111111123467888899888742 2332222 26788999988 45564 44457889999
Q ss_pred eCCCCccccCCCCCccccccCeEEEEEEC-CeEEEEecC---CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCC
Q 003205 114 NIHAELIEPNASMGKECFEENVVECVFWG-NGVVCVTEA---NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTM 189 (839)
Q Consensus 114 ~~~G~~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~---~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~ 189 (839)
+++|...+...... -..-.++.+-+ +|.++.|.- .+++.. +.++.....+....+ ..|...++ .+
T Consensus 112 ~~dG~~~~~l~~~~----l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~-~~dG~~~~~l~~~~~-~~P~Glal-d~---- 180 (619)
T 3s94_A 112 NLDGSLRKVLFWQE----LDQPRAIALDPSSGFMYWTDWGEVPKIERA-GMDGSSRFIIINSEI-YWPNGLTL-DY---- 180 (619)
T ss_dssp ETTSCSCEEEECSS----CSCCCCEEEETTTTEEEEEECSSSCEEEEE-ETTSCSCEEEECSSC-SSEEEEEE-ET----
T ss_pred ECCCCCEEEEEeCC----CCCCceEEEecCCCeEEEeccCCCCEEEEE-ECCCCceEEEEeCCC-CCCcEEEE-Ec----
Confidence 99998754443211 11233455655 566666652 234333 233322222322112 33554443 22
Q ss_pred CCcEEEEEEe-CCeEEEEecCCcc-----c-ccCCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 190 TGSVEVLIGT-DAGILMLDEDGVQ-----K-VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 190 ~~~~~v~~s~-d~tv~l~~~~~~~-----~-~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
+++.+..+.. .+.|..++.+|.. . ....| ..|++..+ ....+=..++.|+..+..
T Consensus 181 ~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P-~gi~~~~~-~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 181 EEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHP-FALTLFED-ILYWTDWSTHSILACNKY 242 (619)
T ss_dssp TTTEEEEEETTTCCEEEESSSCCEEC---------C-CCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred cCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCc-eEEEEeCC-EEEEecCCCCEEEEEECC
Confidence 4555555543 6788888888764 1 11223 47777665 222222235567777654
No 266
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=90.90 E-value=3 Score=44.90 Aligned_cols=139 Identities=12% Similarity=0.073 Sum_probs=80.3
Q ss_pred CCeEEEeecCCCeEEEEEeCCeEEEEeCCCCccccC-CCCCccccccCeEEEEEECC----eEEEEecC---------Ce
Q 003205 88 GRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPN-ASMGKECFEENVVECVFWGN----GVVCVTEA---------NR 153 (839)
Q Consensus 88 ~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~~~~~-~g~~~~~~~~~V~~~~~~~~----G~v~~t~~---------~~ 153 (839)
....+|.|.||+.|.++..+|.|++++..|+ ..+. ++.... -+.+...+.+.++ |.++++.. .+
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~-~~~~~~~v~~~-g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISPSGK-KLVASFDVANV-GEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECSSCE-EEEEECCCCCS-TTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeCCCc-eEeeccceeec-CCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 6789999999999999999999999987776 2210 000000 0356788888885 87777643 45
Q ss_pred EEEEecCCC---c-eEEE----cCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe-------------CCeEEEEecCCcc
Q 003205 154 YFCMADFAT---M-KVCE----LARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-------------DAGILMLDEDGVQ 212 (839)
Q Consensus 154 ~~~v~~~~~---~-~~~~----l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~-------------d~tv~l~~~~~~~ 212 (839)
++.+..-.. . ..+. ++.... +.++.. .|+|||.+.+..+. .+.|+.++.+|..
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~-h~~~~l-----~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~ 180 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYI-HNGGRI-----RFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP 180 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSS-CCCCCE-----EECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCC-cCCceE-----EECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC
Confidence 555542111 0 0111 221000 223222 24558875555432 2578888888751
Q ss_pred -------------cccCCCceEEEECC-CCcEEEEee
Q 003205 213 -------------KVDDTLSQKMAVSP-NGNFVACFT 235 (839)
Q Consensus 213 -------------~~~~~~i~~ia~Sp-ng~~iA~~~ 235 (839)
.+... -..|+|+| +|++.+.=+
T Consensus 181 p~~npf~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 181 PADNPFPNSPIWSYGHRN-PQGIDWHRASGVMVATEH 216 (354)
T ss_dssp CTTSSSTTCCEEEECCSC-CCEEEECTTTCCEEEEEC
T ss_pred CCCCCCCCCcEEEEccCC-cceEEEeCCCCCEEEEec
Confidence 12222 35899999 777655533
No 267
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=90.21 E-value=7.7 Score=42.93 Aligned_cols=146 Identities=14% Similarity=0.124 Sum_probs=79.2
Q ss_pred CCeEEEeecCC---CeEEEEEeCCeEEEEeC-CCCccccCCCCCccccccCeEEEEEECCeEEEEecCC-----e-EEEE
Q 003205 88 GRLIGMSWSED---QTLICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-----R-YFCM 157 (839)
Q Consensus 88 ~~I~~~~fs~d---e~Lv~v~~dGtv~l~~~-~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~-----~-~~~v 157 (839)
....++.|+|+ +.|.++...+.|+.+++ .|+..+. .+. ......+.+.++|-++++..+ + ++.+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~-----~~~P~giavd~dG~lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTN-----IGQCADVNFTLNGDMVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCC-----CSCEEEEEECTTCCEEEEECCSCTTSEEEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecC-----CCCccEEEECCCCCEEEEcCCCCcccceEEEE
Confidence 45789999985 77877766588999998 5555433 322 234667788887776666531 2 3333
Q ss_pred ecCCCce-EEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecC-Ccc-----cccCCC-ceEEEECCCCc
Q 003205 158 ADFATMK-VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED-GVQ-----KVDDTL-SQKMAVSPNGN 229 (839)
Q Consensus 158 ~~~~~~~-~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~-~~~-----~~~~~~-i~~ia~Spng~ 229 (839)
..-.... ...++. + ..|...++-+. +|.+.+.-..++.|+.++.+ +.. .....+ -..|+++|+|+
T Consensus 213 ~~~~~~~~~~~~~~--~-~~P~giavd~~----~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~ 285 (433)
T 4hw6_A 213 TRASGFTERLSLCN--A-RGAKTCAVHPQ----NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGD 285 (433)
T ss_dssp CGGGTTCCEEEEEE--C-SSBCCCEECTT----TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSS
T ss_pred ECCCCeeccccccc--c-CCCCEEEEeCC----CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCC
Confidence 2211110 111211 1 23443333221 34333332236778888876 432 111112 23699999998
Q ss_pred EEE-EeecCCeEEEEecC
Q 003205 230 FVA-CFTHDGRLVVNNTN 246 (839)
Q Consensus 230 ~iA-~~~~~g~i~i~ssd 246 (839)
.|- +-+.++.|+.++.|
T Consensus 286 ~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 286 WAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp EEEEEETTTTEEEEEEBC
T ss_pred EEEEEeCCCCEEEEEeCC
Confidence 443 33446678887654
No 268
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=90.20 E-value=8.3 Score=45.51 Aligned_cols=67 Identities=15% Similarity=0.187 Sum_probs=47.1
Q ss_pred CeEEEEecCC-cc---cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceee
Q 003205 201 AGILMLDEDG-VQ---KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAW 267 (839)
Q Consensus 201 ~tv~l~~~~~-~~---~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~W 267 (839)
++|+.||... .. .....++..-.++..|..+..++.||+++.++.+-++.+-++.+.......-|.|
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty 525 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTY 525 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred eeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEE
Confidence 6788899764 32 2233445555777788899999999999999988899998887654322233554
No 269
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=89.99 E-value=5.7 Score=42.62 Aligned_cols=74 Identities=9% Similarity=0.122 Sum_probs=48.5
Q ss_pred CCceeEEEecCCCCCeEEEeecCCCe-EEEEEeCCeEEEEeCCCCccccCCCC-Cc-cccccCeEEEEEEC----CeEEE
Q 003205 75 GVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAELIEPNASM-GK-ECFEENVVECVFWG----NGVVC 147 (839)
Q Consensus 75 G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~dGtv~l~~~~G~~~~~~~g~-~~-~~~~~~V~~~~~~~----~G~v~ 147 (839)
|-.+..+.-.- ....+|.|.||+. +.++..+|.|++++..|+..+...+. .+ ..-+.+...+.+.+ +|.+.
T Consensus 7 g~~~~~va~~l--~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lY 84 (353)
T 2g8s_A 7 TVNVEVLQDKL--DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIW 84 (353)
T ss_dssp CSEEEEEEEEE--SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEE
T ss_pred CcEEEEEECCC--CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEE
Confidence 44444443322 6789999999999 99999999999998777653211110 00 00145677888887 68877
Q ss_pred Eec
Q 003205 148 VTE 150 (839)
Q Consensus 148 ~t~ 150 (839)
++.
T Consensus 85 v~~ 87 (353)
T 2g8s_A 85 LSY 87 (353)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 270
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=89.85 E-value=21 Score=37.28 Aligned_cols=170 Identities=10% Similarity=0.034 Sum_probs=96.6
Q ss_pred EcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCe-EEEEEe-C----------
Q 003205 40 CAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQ-D---------- 107 (839)
Q Consensus 40 ~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~-Lv~v~~-d---------- 107 (839)
+|++|+.|..... ..+..|.-.+.+|.-...|.-+. +-.|++++. +.-+.. +
T Consensus 21 ~~~~g~~iy~~n~----------~d~~~ly~~~~dg~~~~~l~~~~------~~~i~~~g~~Iyy~~~~~~~~~~~~~~~ 84 (302)
T 3s25_A 21 FCESDGEVFFSNT----------NDNGRLYAMNIDGSNIHKLSNDT------AMYINADKNYVYYVRNNNQKITSQTFFS 84 (302)
T ss_dssp EEEETTEEEEEEG----------GGTTEEEEEETTSCSCEEEEEEE------EEEEEECSSEEEEEEECC------CCSS
T ss_pred EEEeCCEEEEEeC----------CCCceEEEEcCCCCCCEEccCCc------eeeEEEcCCEEEEEECCCCcccccceec
Confidence 5578999988752 12567888888998877776432 235577766 443333 3
Q ss_pred ---CeEEEEeCCCCccccCCCCCccccccCeEEEEEECCeEEEEec-----CCeEEEEecCCCceEEEcCCCCCCCCCce
Q 003205 108 ---GTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTE-----ANRYFCMADFATMKVCELARPEVEELPHC 179 (839)
Q Consensus 108 ---Gtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~-----~~~~~~v~~~~~~~~~~l~~~~~~~~~~~ 179 (839)
+.++..++.|.-.+..... ....+.+- ++.+..+. +..+|.+. +++...++|... ..
T Consensus 85 ~n~~~Iy~i~~dg~~~~~l~~~-------~~~~~s~~-g~~Iy~~~~~~~~~~~Iy~~~-~dGs~~~~lt~~----~~-- 149 (302)
T 3s25_A 85 YDRNSLCRIKRNGHGSTVLDPD-------PCIYASLI-GNYIYYLHYDTQTATSLYRIR-IDGEEKKKIKNH----YL-- 149 (302)
T ss_dssp CCSEEEEEEETTSCCCEEEECS-------CEEEEEEE-TTEEEEEEESSSSCEEEEEEE-TTSCCCEEEESS----CC--
T ss_pred cCCCeEEEEeCCCCcceEeecC-------CccEEEEe-CCEEEEEeecCCCCceEEEEE-CCCCCeEEEeCC----Cc--
Confidence 3455557777643222111 11222222 22333222 23455553 344334444321 10
Q ss_pred EEEeCCCCCCCCcEEEEEEe-CCeEEEEecCCcc--cccCCCceEEEECCCCcEEEEeecCC--eEEEEecC
Q 003205 180 VAVIEPKYTMTGSVEVLIGT-DAGILMLDEDGVQ--KVDDTLSQKMAVSPNGNFVACFTHDG--RLVVNNTN 246 (839)
Q Consensus 180 w~vi~~~~S~~~~~~v~~s~-d~tv~l~~~~~~~--~~~~~~i~~ia~Spng~~iA~~~~~g--~i~i~ssd 246 (839)
+.++++|+.+...+. ..+|+..+.+|.. .+..++.. +.++|+|+.|+.....+ .|.....|
T Consensus 150 -----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ld 215 (302)
T 3s25_A 150 -----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCY-KPVVLDDTNVYYMDVNRDNAIVHVNIN 215 (302)
T ss_dssp -----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSCEE-EEEEEETTEEEEEEGGGTTEEEEECSS
T ss_pred -----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCCcc-ceeeecCCEEEEEEcCCCcEEEEEECC
Confidence 346778998887776 6789999988764 33334433 45779999998866443 46666555
No 271
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=89.63 E-value=22 Score=37.25 Aligned_cols=172 Identities=10% Similarity=-0.013 Sum_probs=93.3
Q ss_pred ceEEEEcCCCCceeEEEecC-CCCCeEEEeecCCCeEEEEEeCCeEEEEeCC-CC-ccccCCCCCccccccCeEEEEEEC
Q 003205 66 RKLRIFNSAGVLISETVWKN-PGGRLIGMSWSEDQTLICVVQDGTVYRYNIH-AE-LIEPNASMGKECFEENVVECVFWG 142 (839)
Q Consensus 66 ~~I~iy~~~G~ll~ti~~~~-~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~-G~-~~~~~~g~~~~~~~~~V~~~~~~~ 142 (839)
+.|..-+-.|+--..+.... .++.+..+.+.+++.++++..+|.+.. +.+ |+ ......+. ...+..+.+.+
T Consensus 99 g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~-----~~~~~~~~~~~ 172 (327)
T 2xbg_A 99 PIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEA-----IGVMRNLNRSP 172 (327)
T ss_dssp TEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSC-----CCCEEEEEECT
T ss_pred CeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCC-----CcceEEEEEcC
Confidence 44433222355444443221 125678888888888877778886543 333 43 33333333 44677777777
Q ss_pred CeEEEEe-cCCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecC-Ccc--c---c-
Q 003205 143 NGVVCVT-EANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED-GVQ--K---V- 214 (839)
Q Consensus 143 ~G~v~~t-~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~-~~~--~---~- 214 (839)
+|.+++. ..+.+|.-++-.+.....+.. + .......+. +++++. +++++.++.+++.+.+ |.. . .
T Consensus 173 ~~~~~~~g~~G~~~~S~d~gG~tW~~~~~-~--~~~~~~~~~---~~~~g~-~~~~~~~G~~~~s~~D~G~tW~~~~~~~ 245 (327)
T 2xbg_A 173 SGEYVAVSSRGSFYSTWEPGQTAWEPHNR-T--TSRRLHNMG---FTPDGR-LWMIVNGGKIAFSDPDNSENWGELLSPL 245 (327)
T ss_dssp TSCEEEEETTSSEEEEECTTCSSCEEEEC-C--SSSCEEEEE---ECTTSC-EEEEETTTEEEEEETTEEEEECCCBCTT
T ss_pred CCcEEEEECCCcEEEEeCCCCCceeECCC-C--CCCccceeE---ECCCCC-EEEEeCCceEEEecCCCCCeeEeccCCc
Confidence 7766655 456677655421122222221 1 112223331 234664 4455667777766444 433 1 1
Q ss_pred --cCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccc
Q 003205 215 --DDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVI 252 (839)
Q Consensus 215 --~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~ 252 (839)
....+..|++.|+++.+|... +|.+ .++.|-+..-.
T Consensus 246 ~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~ 283 (327)
T 2xbg_A 246 RRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQ 283 (327)
T ss_dssp SSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCE
T ss_pred ccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccE
Confidence 123478999999988777654 7777 45667555543
No 272
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=88.91 E-value=29 Score=38.16 Aligned_cols=149 Identities=13% Similarity=0.124 Sum_probs=75.4
Q ss_pred CEEEEcCC--CCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCC----e
Q 003205 36 NKVACAPF--GGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDG----T 109 (839)
Q Consensus 36 ~~va~sp~--Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dG----t 109 (839)
..+++.|+ +|-|-++. ..+.|+.++..+..+.++.... ....+++|++++.|.++...+ .
T Consensus 142 ~gvavd~~s~~g~Lyv~D------------~~~~I~~id~~~g~v~~~~~~~--~~P~giavd~dG~lyVad~~~~~~~~ 207 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVG------------QRDAFRHVDFVNQYVDIKTTNI--GQCADVNFTLNGDMVVVDDQSSDTNT 207 (433)
T ss_dssp CEEEECTTTTTCEEEEEC------------BTSCEEEEETTTTEEEEECCCC--SCEEEEEECTTCCEEEEECCSCTTSE
T ss_pred ceEEEccccCCCEEEEEe------------CCCCEEEEECCCCEEEEeecCC--CCccEEEECCCCCEEEEcCCCCcccc
Confidence 46777773 55554442 1278999998666666664333 679999999999976665432 1
Q ss_pred -EEEEeCCCCccc-cCCCCCccccccCeEEEEEEC-CeEEEEec--CCeEEEEecCCCceE-EEcCCCCCCCCCceEEEe
Q 003205 110 -VYRYNIHAELIE-PNASMGKECFEENVVECVFWG-NGVVCVTE--ANRYFCMADFATMKV-CELARPEVEELPHCVAVI 183 (839)
Q Consensus 110 -v~l~~~~G~~~~-~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~--~~~~~~v~~~~~~~~-~~l~~~~~~~~~~~w~vi 183 (839)
+..++..|.+.. ..+.. -..-..+.+.+ +|.++++. +++++.++- +.... ..+...+ ..+....+
T Consensus 208 gv~~~~~~~~~~~~~~~~~-----~~~P~giavd~~~G~lyv~d~~~~~V~~~d~-~~g~~~~~~~~~~--~~~~~~~i- 278 (433)
T 4hw6_A 208 GIYLFTRASGFTERLSLCN-----ARGAKTCAVHPQNGKIYYTRYHHAMISSYDP-ATGTLTEEEVMMD--TKGSNFHI- 278 (433)
T ss_dssp EEEEECGGGTTCCEEEEEE-----CSSBCCCEECTTTCCEEECBTTCSEEEEECT-TTCCEEEEEEECS--CCSSCEEE-
T ss_pred eEEEEECCCCeeccccccc-----cCCCCEEEEeCCCCeEEEEECCCCEEEEEEC-CCCeEEEEEeccC--CCCCcccE-
Confidence 333344333320 00000 00112334455 66666554 234555542 11111 2221100 11111112
Q ss_pred CCCCCCCCcEEEEEEe-CCeEEEEecC
Q 003205 184 EPKYTMTGSVEVLIGT-DAGILMLDED 209 (839)
Q Consensus 184 ~~~~S~~~~~~v~~s~-d~tv~l~~~~ 209 (839)
.++|+|+.+.++.. ++.|+.++.+
T Consensus 279 --a~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 279 --VWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp --EECTTSSEEEEEETTTTEEEEEEBC
T ss_pred --EEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 34558885555554 6788888765
No 273
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=88.88 E-value=42 Score=40.13 Aligned_cols=169 Identities=9% Similarity=0.016 Sum_probs=90.8
Q ss_pred CceEEEEcCCCCceeEEEecCCCCCeEEEeecCC-CeEE-EEEeCCeEEEEeCCCCcc----ccCCCCCccccccCeEEE
Q 003205 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSED-QTLI-CVVQDGTVYRYNIHAELI----EPNASMGKECFEENVVEC 138 (839)
Q Consensus 65 ~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~d-e~Lv-~v~~dGtv~l~~~~G~~~----~~~~g~~~~~~~~~V~~~ 138 (839)
...|+..+..|.....+.-.. ..+++++|.+. +.|. +-..++.|+.+++.|... +..+... -.....+
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~~~--~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~----l~~P~GL 476 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIPNL--RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD----IQAPDGL 476 (791)
T ss_dssp BSSEEEECTTSCCCEEEECSC--SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS----CSCCCEE
T ss_pred ccceeEeeccCCcceeeecCC--CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecC----CCCccee
Confidence 466888888777666665444 78999999984 5554 444567788888877421 1111100 1112233
Q ss_pred EE-ECCeEEEEecC--CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe--CCeEEEEecCCcc-
Q 003205 139 VF-WGNGVVCVTEA--NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT--DAGILMLDEDGVQ- 212 (839)
Q Consensus 139 ~~-~~~G~v~~t~~--~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~--d~tv~l~~~~~~~- 212 (839)
.+ |.+|.++.+.. ++|+ +-+.++.....+....+ ..|...+|-+ .+..+..... .+.|...+.+|..
T Consensus 477 AvD~~~~~LY~tD~~~~~I~-v~~ldG~~~~~l~~~~l-~~P~gIaVDp-----~~g~LYwtD~g~~~~I~~~~~dG~~~ 549 (791)
T 3m0c_C 477 AVDWIHSNIYWTDSVLGTVS-VADTKGVKRKTLFRENG-SKPRAIVVDP-----VHGFMYWTDWGTPAKIKKGGLNGVDI 549 (791)
T ss_dssp EEETTTTEEEEEETTTTEEE-EEETTSSSEEEEEECTT-CCEEEEEEET-----TTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred eeeecCCcEEEEecCCCeEE-EEeCCCCeEEEEEeCCC-CCcceEEEec-----CCCCEEEecCCCCCeEEEEecCCCce
Confidence 44 33555555532 2333 33344433333332222 3466554433 4455554443 2678888988865
Q ss_pred ----cccCCCceEEEECCCCcEEEEee-cCCeEEEEecC
Q 003205 213 ----KVDDTLSQKMAVSPNGNFVACFT-HDGRLVVNNTN 246 (839)
Q Consensus 213 ----~~~~~~i~~ia~Spng~~iA~~~-~~g~i~i~ssd 246 (839)
......-..|+++|.++.|-... ..++|+..+.+
T Consensus 550 ~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 550 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence 12224457899998776655543 34567777665
No 274
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=88.53 E-value=36 Score=38.21 Aligned_cols=105 Identities=11% Similarity=-0.056 Sum_probs=59.1
Q ss_pred HHHHHHHHcCCcchHHhHHhH---cCCChHHHHHHHHHHHHhCCChhHHHHhhcc--------CCCC----CCchHHHHH
Q 003205 696 DTIRTCIVLGNHRAAMKVKTE---FKVSEKRWYWLKVFALATKRDWDALERFSKE--------KRPP----IGYRPFVEA 760 (839)
Q Consensus 696 ~ti~~l~~~~~~k~a~~l~k~---fkvsdkr~~~~kl~ala~~~~w~~L~~f~~~--------KKsp----Igyepfv~~ 760 (839)
.....+...|+.+.|.++-++ ..-.+...|......+.+.|++++-..+... ...| ..|.-...+
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~ 525 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH
Confidence 334445556666655544322 1223455677777777777777666555431 1122 233445667
Q ss_pred HHhcCCHHHHHHhhccC----C-CH---HHHHHHHHHcCCHHHHHHHH
Q 003205 761 CVDADEKGEALKYIPKL----V-DP---RERAEAYARIGMAKEAADAA 800 (839)
Q Consensus 761 ~~~~~~~~ea~~yI~~i----~-d~---~~r~~~~~~~~~~~~A~~~a 800 (839)
+.+.|+.++|..+..++ + ++ .....+|.+.|++.+|.+..
T Consensus 526 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 526 YRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHL 573 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 77777777776666553 1 22 45556677777777776554
No 275
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=87.70 E-value=7.1 Score=41.82 Aligned_cols=69 Identities=10% Similarity=0.094 Sum_probs=46.4
Q ss_pred CCeEEEeecCCCeEEEEEeCCeEEEEeCCCCccccC-CCCCccccccCeEEEEEECC----eEEEEecC-------CeEE
Q 003205 88 GRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPN-ASMGKECFEENVVECVFWGN----GVVCVTEA-------NRYF 155 (839)
Q Consensus 88 ~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~~~~~-~g~~~~~~~~~V~~~~~~~~----G~v~~t~~-------~~~~ 155 (839)
....+|.|.|||.+.++..+|.|++++ .|+...+. .+...+ -+.....+.+.++ |.++++.. .+++
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~-g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHR-GESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCS-TTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeec-CCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 678999999999998889999999998 77642110 100000 0346778888886 77777654 4565
Q ss_pred EEe
Q 003205 156 CMA 158 (839)
Q Consensus 156 ~v~ 158 (839)
.+.
T Consensus 109 r~~ 111 (352)
T 2ism_A 109 RLR 111 (352)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 276
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=87.48 E-value=26 Score=35.41 Aligned_cols=162 Identities=15% Similarity=0.105 Sum_probs=92.9
Q ss_pred CceeEEEecCCCCCeEEEeecCCCeEEEEE-eC--CeEEEEeC-CCCccc-cCCCCCccccccCeEEEEEECCeEEEEec
Q 003205 76 VLISETVWKNPGGRLIGMSWSEDQTLICVV-QD--GTVYRYNI-HAELIE-PNASMGKECFEENVVECVFWGNGVVCVTE 150 (839)
Q Consensus 76 ~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~-~d--Gtv~l~~~-~G~~~~-~~~g~~~~~~~~~V~~~~~~~~G~v~~t~ 150 (839)
+.+.+++++. ..-.-++.|++ +.|...+ .+ ..|+.+|+ .|+... ..++.. .--..+.++++-+.++|-
T Consensus 10 ~v~~~~phd~-~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-----~fgeGi~~~~~~ly~ltw 82 (243)
T 3mbr_X 10 RVVKRYPHDT-TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-----YFGAGIVAWRDRLIQLTW 82 (243)
T ss_dssp EEEEEEECCT-TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-----CCEEEEEEETTEEEEEES
T ss_pred EEEEEcCCCC-ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-----cceeEEEEeCCEEEEEEe
Confidence 4677888765 35688999986 6775444 43 38999986 577633 333321 011234556666666664
Q ss_pred CC-eEEEEecCCCc-eEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----c--ccC---CC
Q 003205 151 AN-RYFCMADFATM-KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----K--VDD---TL 218 (839)
Q Consensus 151 ~~-~~~~v~~~~~~-~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-----~--~~~---~~ 218 (839)
.. .++.++ .++. ...+++- +...|.+-+ +|+.++....+++|+.+|..... . .+. ..
T Consensus 83 ~~~~v~v~D-~~tl~~~~ti~~-----~~~Gwglt~-----dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~ 151 (243)
T 3mbr_X 83 RNHEGFVYD-LATLTPRARFRY-----PGEGWALTS-----DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDN 151 (243)
T ss_dssp SSSEEEEEE-TTTTEEEEEEEC-----SSCCCEEEE-----CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred eCCEEEEEE-CCcCcEEEEEeC-----CCCceEEee-----CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccc
Confidence 43 444443 3332 2334432 235686643 67766665668899999987543 1 111 22
Q ss_pred ceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccC
Q 003205 219 SQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESC 256 (839)
Q Consensus 219 i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~ 256 (839)
.+.+... +|+.-|-.-.+..|.+++..-++++..++.
T Consensus 152 lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl 188 (243)
T 3mbr_X 152 LNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDL 188 (243)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEEC
T ss_pred ceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 3344433 776555544566788888776777766653
No 277
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=87.37 E-value=12 Score=40.12 Aligned_cols=142 Identities=13% Similarity=0.024 Sum_probs=80.6
Q ss_pred CCeEEEeecCCCeEEEEEe-CCeEEEEeCC-CCcccc-CCCCCccccccCeEEEEEEC----CeEEEEe----cCCeEEE
Q 003205 88 GRLIGMSWSEDQTLICVVQ-DGTVYRYNIH-AELIEP-NASMGKECFEENVVECVFWG----NGVVCVT----EANRYFC 156 (839)
Q Consensus 88 ~~I~~~~fs~de~Lv~v~~-dGtv~l~~~~-G~~~~~-~~g~~~~~~~~~V~~~~~~~----~G~v~~t----~~~~~~~ 156 (839)
....+|.|.||+.+++... .|.|++++.. |+.... .++.....-+.+...+.+.+ +|.+.++ ...+++.
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 7889999999999988887 8999999754 553211 11100000156788899987 5878775 2345655
Q ss_pred EecCC---------CceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe-------------CCeEEEEecCCcc--
Q 003205 157 MADFA---------TMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-------------DAGILMLDEDGVQ-- 212 (839)
Q Consensus 157 v~~~~---------~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~-------------d~tv~l~~~~~~~-- 212 (839)
+..-. ++. ..+...+. ...|.+ -...|.|||.+-|..+. .+.|+.++.+|..
T Consensus 112 ~~~~~~~~~~~~~~~~~-~i~~~~p~-~~~H~g--~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~ 187 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPD-TVFRGIPK-GVIHNG--GRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAP 187 (347)
T ss_dssp EEBCTTSCTTCCBCCCE-EEEEEECC-CSSCCC--CCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCT
T ss_pred EEeCCCCcccccCCCcE-EEEEcCCC-CCCccC--ccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccC
Confidence 53211 111 11111111 111111 01135568876666542 4678888888752
Q ss_pred -----------cccCCCceEEEECCCCcEEEEe
Q 003205 213 -----------KVDDTLSQKMAVSPNGNFVACF 234 (839)
Q Consensus 213 -----------~~~~~~i~~ia~Spng~~iA~~ 234 (839)
.++. ....|+++|+|++.+.=
T Consensus 188 ~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d 219 (347)
T 3das_A 188 GNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASE 219 (347)
T ss_dssp TCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEE
T ss_pred CCCCCCCeEEeeCCC-CcceEEECCCCCEEEEe
Confidence 1222 24689999998765553
No 278
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=87.36 E-value=24 Score=41.41 Aligned_cols=184 Identities=10% Similarity=0.026 Sum_probs=94.9
Q ss_pred CceEEEEc-CCCCceeEEEecCCCC-------Ce--EEEeecCCCeEEEEEeCCeEEEEeC-CCCcc-ccCCC-CCcccc
Q 003205 65 LRKLRIFN-SAGVLISETVWKNPGG-------RL--IGMSWSEDQTLICVVQDGTVYRYNI-HAELI-EPNAS-MGKECF 131 (839)
Q Consensus 65 ~~~I~iy~-~~G~ll~ti~~~~~~~-------~I--~~~~fs~de~Lv~v~~dGtv~l~~~-~G~~~-~~~~g-~~~~~~ 131 (839)
++.|.-++ .+|+++++........ .+ .++.. .++.+++.+.||.+..+|. .|+.. ++..+ ....
T Consensus 86 ~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~-- 162 (677)
T 1kb0_A 86 WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL-WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKG-- 162 (677)
T ss_dssp GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCS--
T ss_pred CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE-ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCc--
Confidence 57788888 4899998877653100 00 11122 2667778888999888885 68862 22222 1000
Q ss_pred ccCeEE-EEEECCeEEEEec-------CCeEEEEecCCCceEEEcCCCCCC---------------------------CC
Q 003205 132 EENVVE-CVFWGNGVVCVTE-------ANRYFCMADFATMKVCELARPEVE---------------------------EL 176 (839)
Q Consensus 132 ~~~V~~-~~~~~~G~v~~t~-------~~~~~~v~~~~~~~~~~l~~~~~~---------------------------~~ 176 (839)
...+.. ..+. +|.+++.. ++.++.++--.+...+++...+-. ..
T Consensus 163 ~~~~~~~p~v~-~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g 241 (677)
T 1kb0_A 163 SLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGG 241 (677)
T ss_dssp SCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEE
T ss_pred CcccccCcEEE-CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCC
Confidence 001111 1122 45555543 345665554334444444321100 11
Q ss_pred CceEEEeCCCCCCCCcEEEEEEeCC-------------------eEEEEecC-Ccc----c-c-cC-------CCceEEE
Q 003205 177 PHCVAVIEPKYTMTGSVEVLIGTDA-------------------GILMLDED-GVQ----K-V-DD-------TLSQKMA 223 (839)
Q Consensus 177 ~~~w~vi~~~~S~~~~~~v~~s~d~-------------------tv~l~~~~-~~~----~-~-~~-------~~i~~ia 223 (839)
...|. .+.++++++++.+...++ +|+.+|.+ |.. . . +. ....-+.
T Consensus 242 ~~~w~--~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~ 319 (677)
T 1kb0_A 242 GTMWD--SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILAD 319 (677)
T ss_dssp CCCCS--CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEE
T ss_pred ccccc--ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEe
Confidence 22232 223455777666554442 48888866 332 1 1 11 1112233
Q ss_pred ECCCC---cEEEEeecCCeEEEEecCCCCccccc
Q 003205 224 VSPNG---NFVACFTHDGRLVVNNTNFSSPVIDE 254 (839)
Q Consensus 224 ~Spng---~~iA~~~~~g~i~i~ssd~~~~l~e~ 254 (839)
...+| +.++..+.+|.+++++..-++.+..+
T Consensus 320 ~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~ 353 (677)
T 1kb0_A 320 IKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK 353 (677)
T ss_dssp EEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred cccCCcEeeEEEEECCCCEEEEEECCCCCEeccc
Confidence 34478 67888889999999987766666444
No 279
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=87.12 E-value=32 Score=39.87 Aligned_cols=159 Identities=13% Similarity=0.028 Sum_probs=89.7
Q ss_pred CCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecC-CCeEE-EEEeCCeEEEEeCCCCc
Q 003205 42 PFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSE-DQTLI-CVVQDGTVYRYNIHAEL 119 (839)
Q Consensus 42 p~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~-de~Lv-~v~~dGtv~l~~~~G~~ 119 (839)
+-..++|+.-|+..-..+=.+...+.|.-++.+|....++.-.. .+...++++.+ .+.|. +=+..++|.+.++.|+.
T Consensus 347 ~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~-~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~ 425 (619)
T 3s94_A 347 DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQ-IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM 425 (619)
T ss_dssp CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECC-CCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe
Confidence 34557777665421111111234678999999997666665333 25677888875 56664 44457889999999987
Q ss_pred cccCCCCCccccccCeEEEEEEC-CeEEEEecC---CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEE
Q 003205 120 IEPNASMGKECFEENVVECVFWG-NGVVCVTEA---NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEV 195 (839)
Q Consensus 120 ~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~---~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v 195 (839)
.+...... -....++.+.+ +|.++.|.. .+++..+ .++.....+....+ ..|...++ .+ +++.+.
T Consensus 426 ~~~l~~~~----l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~-~dG~~~~~l~~~~l-~~P~Glal-D~----~~~~LY 494 (619)
T 3s94_A 426 RKILISED----LEEPRAIVLDPMVGYMYWTDWGEIPKIERAA-LDGSDRVVLVNTSL-GWPNGLAL-DY----DEGKIY 494 (619)
T ss_dssp CEEEECTT----CCSEEEEEEETTTTEEEEEECSSSCEEEEEE-TTSCSCEEEECSSC-SCEEEEEE-ET----TTTEEE
T ss_pred EEEEEECC----CCCeeeEEEEcCCCcEEEecCCCCCEEEEEc-cCCCccEEEEeCCC-CCCeeeEE-cc----cCCEEE
Confidence 55443221 23456777887 588888763 3454443 33332233332122 34554444 22 445554
Q ss_pred EEEe-CCeEEEEecCCcc
Q 003205 196 LIGT-DAGILMLDEDGVQ 212 (839)
Q Consensus 196 ~~s~-d~tv~l~~~~~~~ 212 (839)
.+.. .+.|..++.+|..
T Consensus 495 ~aD~~~~~I~~~~~dG~~ 512 (619)
T 3s94_A 495 WGDAKTDKIEVMNTDGTG 512 (619)
T ss_dssp EEETTTTEEEEEESSSCC
T ss_pred EEECCCCEEEEEecCCCc
Confidence 4443 5677777777643
No 280
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=86.91 E-value=2.1 Score=41.20 Aligned_cols=89 Identities=13% Similarity=0.038 Sum_probs=61.6
Q ss_pred HHHHHhCCChhHHHHhhccCCCCCCchHHHHHHHhcCCHHHHHHhhccCCCHHHHHHHHHHcCCHHHHHHHHHhcCCHHH
Q 003205 729 VFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIGMAKEAADAASQAKDGEL 808 (839)
Q Consensus 729 l~ala~~~~w~~L~~f~~~KKspIgyepfv~~~~~~~~~~ea~~yI~~i~d~~~r~~~~~~~~~~~~A~~~a~~~kd~~~ 808 (839)
.+++.+.++|+.|.-+......--++.--.+.+...|...-|-..-=...|+++++++|.++|.+.+|+-.|.-.+..+.
T Consensus 54 e~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~g~~~~ 133 (177)
T 3mkq_B 54 EMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDEAA 133 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHHcCcHHH
Confidence 34667777777774333221122223345566677777766543332344789999999999999999999999999888
Q ss_pred HHHHHHHhc
Q 003205 809 LGRLKLTFA 817 (839)
Q Consensus 809 L~~i~~~~~ 817 (839)
-++|...+.
T Consensus 134 a~~~~~~~~ 142 (177)
T 3mkq_B 134 ASAFLEQAE 142 (177)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 888887764
No 281
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=86.48 E-value=4.4 Score=40.64 Aligned_cols=65 Identities=11% Similarity=0.070 Sum_probs=38.8
Q ss_pred CeEEEeecCCCeEEEEEeCCeEEEEeCCCCccccCCCCCccccccCe--------EEEEEECCeEEEEecCCeEEEEec
Q 003205 89 RLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENV--------VECVFWGNGVVCVTEANRYFCMAD 159 (839)
Q Consensus 89 ~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V--------~~~~~~~~G~v~~t~~~~~~~v~~ 159 (839)
++.+|+|.||+.|..| .+|.++-.+....-.+...+. ...| ..+-|-++|.+.+..++++|.+..
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s-----~t~IG~~Gw~~F~a~~fD~~G~LYav~dG~iyr~~p 114 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGR-----AKKIGNGGWNQFQFLFFDPNGYLYAVSKDKLYKASP 114 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHH-----CEEEECSCGGGCSEEEECTTSCEEEEETTEEEEESC
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCccccccc-----ccEecccccccceEEEECCCCCEEEeCCCEEEEeCC
Confidence 4559999999999777 999766555421111111111 1112 233344588888888888887653
No 282
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=86.30 E-value=61 Score=38.44 Aligned_cols=172 Identities=12% Similarity=0.101 Sum_probs=93.8
Q ss_pred eEEEEcCCCCceeEEEecC------CCCCeEEEeecCCCeEEEEEeCCeEEEEeCC-CCccccCCCCC-cccc-ccCeEE
Q 003205 67 KLRIFNSAGVLISETVWKN------PGGRLIGMSWSEDQTLICVVQDGTVYRYNIH-AELIEPNASMG-KECF-EENVVE 137 (839)
Q Consensus 67 ~I~iy~~~G~ll~ti~~~~------~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~-G~~~~~~~g~~-~~~~-~~~V~~ 137 (839)
-|..|+..+..+..+.... ....|.++...++|.|.+++.+| +.+|+.. +++..+..... ...+ ...|.+
T Consensus 236 Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ 314 (795)
T 4a2l_A 236 GLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRS 314 (795)
T ss_dssp CEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEE
T ss_pred CeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEE
Confidence 4677777665555554321 01469999999999999888886 7778764 44433321110 0000 345766
Q ss_pred EEEECCeEE-EEecCCeEEEEecCCCceEEEcCCC----CCCCCCceEEEeCCCCCCCCcEEEEEEe-CCeEEEEecCCc
Q 003205 138 CVFWGNGVV-CVTEANRYFCMADFATMKVCELARP----EVEELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDEDGV 211 (839)
Q Consensus 138 ~~~~~~G~v-~~t~~~~~~~v~~~~~~~~~~l~~~----~~~~~~~~w~vi~~~~S~~~~~~v~~s~-d~tv~l~~~~~~ 211 (839)
+..-.+|.+ +.|..+-++.++.-. .....+... ++ .....+++.. ..+|. +.++. ++.|..++....
T Consensus 315 i~~D~~g~lWigt~~~Gl~~~~~~~-~~~~~~~~~~~~~~l-~~~~V~~i~~---d~~g~--lWiGt~~~Gl~~~~~~~~ 387 (795)
T 4a2l_A 315 IFMDSQGGMWLGTYFGGLNYYHPIR-NRFKNIRNIPYKNSL-SDNVVSCIVE---DKDKN--LWIGTNDGGLNLYNPITQ 387 (795)
T ss_dssp EEECTTSCEEEEESSSCEEEECGGG-GSSEEECCCTTSSSC-SCSSEEEEEE---CTTSC--EEEEESSSCEEEECTTTC
T ss_pred EEEeCCcCEEEEECCCCeEEeCCCc-ccceEEcCCCCCCCC-CCCeeEEEEE---CCCCC--EEEEECCCCeEEEcCCCC
Confidence 555555544 444445566554321 112222211 11 2233455532 11444 33444 568999987643
Q ss_pred c----c---------ccCCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 212 Q----K---------VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 212 ~----~---------~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
. . .....|..|+..++|+.|-+++.++-|..++.+
T Consensus 388 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~ 435 (795)
T 4a2l_A 388 RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRN 435 (795)
T ss_dssp CEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCC
Confidence 2 1 123568888888888746666665667777654
No 283
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=86.10 E-value=1.8 Score=51.40 Aligned_cols=169 Identities=9% Similarity=-0.000 Sum_probs=80.8
Q ss_pred CCceEEEEcCCC----CceeEEEecCCCCCeEEEeecC-CCeEE-EEEeCCeEEEEeCCCCccccCCCCCccccccCeEE
Q 003205 64 ALRKLRIFNSAG----VLISETVWKNPGGRLIGMSWSE-DQTLI-CVVQDGTVYRYNIHAELIEPNASMGKECFEENVVE 137 (839)
Q Consensus 64 ~~~~I~iy~~~G----~ll~ti~~~~~~~~I~~~~fs~-de~Lv-~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~ 137 (839)
..+.|+.++.+| ....++.-.. .....++++.+ ++.|. +-..++.|.++++.|...+...... -.....
T Consensus 426 ~~~~I~~~~~~g~~~~~~~~~~i~~~-~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~----~~~P~g 500 (699)
T 1n7d_A 426 SQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQ----GSKPRA 500 (699)
T ss_dssp TTTSBEEEESCCCCC-CCCCCBCCSC-C--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCS----SCCCCC
T ss_pred CCCeEEEEecCCCCCCcceEEEEeCC-CCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCC----CCCcce
Confidence 356788888776 2222221111 13445666764 45554 4345778999999988754333221 011223
Q ss_pred EEEEC-CeEEEEecC---CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe-CCeEEEEecCCcc
Q 003205 138 CVFWG-NGVVCVTEA---NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDEDGVQ 212 (839)
Q Consensus 138 ~~~~~-~G~v~~t~~---~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~-d~tv~l~~~~~~~ 212 (839)
+.+.+ +|.++.|.. +.++.+ +.++.....+....+ ..|...++ +|+++.+.++.. .+.|..++.+|..
T Consensus 501 iavDp~~g~ly~td~~~~~~I~~~-~~dG~~~~~l~~~~l-~~PnGlav-----d~~~~~LY~aD~~~~~I~~~d~dG~~ 573 (699)
T 1n7d_A 501 IVVDPVHGFMYWTDWGTPAKIKKG-GLNGVDIYSLVTENI-QWPNGITL-----DLLSGRLYWVDSKLHSISSIDVNGGN 573 (699)
T ss_dssp EECCSSSSCCEECCCSSSCCEEBC-CSSSCCCCEESCSSC-SSCCCEEE-----CTTTCCEEEEETTTTEEEEECSSSSC
T ss_pred EEEccCCCcEEEcccCCCCeEEEE-eCCCCCeeEEEeCCC-CCccEEEE-----eccCCEEEEEecCCCeEEEEccCCCc
Confidence 34443 565555542 233332 222222222222112 33544433 335555555543 6789999988753
Q ss_pred ---cc----cCCCceEEEECCCCcEEEEeecCCeEEEEec
Q 003205 213 ---KV----DDTLSQKMAVSPNGNFVACFTHDGRLVVNNT 245 (839)
Q Consensus 213 ---~~----~~~~i~~ia~Spng~~iA~~~~~g~i~i~ss 245 (839)
.. ....-..|++..++ +..+-...+.|..++.
T Consensus 574 ~~~~~~~~~~~~~P~glavd~~~-lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 574 RKTILEDEKRLAHPFSLAVFEDK-VFWTDIINEAIFSANR 612 (699)
T ss_dssp CEEECCCSSSCSSCCCCEEETTE-EEEECSTTTCEEEEET
T ss_pred eEEEEecCCcCCCceEeEEECCE-EEEEeCCCCeEEEEEc
Confidence 11 11222456665442 2222234566777654
No 284
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=85.82 E-value=58 Score=37.75 Aligned_cols=159 Identities=11% Similarity=-0.029 Sum_probs=90.8
Q ss_pred CCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEec-----CCCCCeEEEeecCCC-eE-EEEEeCCeEEEEeC
Q 003205 43 FGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWK-----NPGGRLIGMSWSEDQ-TL-ICVVQDGTVYRYNI 115 (839)
Q Consensus 43 ~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~-----~~~~~I~~~~fs~de-~L-v~v~~dGtv~l~~~ 115 (839)
-+.++|+.-|...-..+=.+...+.|+.++.+|....++--. ...+.+.+|++...+ .| ++-+..++|.+.++
T Consensus 339 ~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~ 418 (628)
T 4a0p_A 339 LRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRL 418 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred cCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEEC
Confidence 355666665532111111123467888899999765554322 112578899998864 46 45556788999999
Q ss_pred CCCccccCCCCCccccccCeEEEEEEC-CeEEEEecCC----eEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCC
Q 003205 116 HAELIEPNASMGKECFEENVVECVFWG-NGVVCVTEAN----RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMT 190 (839)
Q Consensus 116 ~G~~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~~----~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~ 190 (839)
+|+......... -.....+.+.+ +|.++.|..+ +++..+ .++.....+.+..+ ..|...++- + +
T Consensus 419 ~G~~~~~l~~~~----l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~-~dG~~~~~l~~~~l-~~P~gla~D-~----~ 487 (628)
T 4a0p_A 419 DGRSVGVVLKGE----QDRPRAVVVNPEKGYMYFTNLQERSPKIERAA-LDGTEREVLFFSGL-SKPIALALD-S----R 487 (628)
T ss_dssp TSCEEEEEEECT----TCCEEEEEEETTTTEEEEEEEETTEEEEEEEE-TTSCSCEEEECSSC-SCEEEEEEE-T----T
T ss_pred CCCeEEEEEeCC----CCceeeEEEecCCCeEEEeecCCCCCeEEEEe-CCCCCcEEEEeccC-CCccEEEEe-C----C
Confidence 999754333211 23457778887 8888887533 344433 34333333333222 345555442 2 4
Q ss_pred CcEEEEEEe-CCeEEEEecCCcc
Q 003205 191 GSVEVLIGT-DAGILMLDEDGVQ 212 (839)
Q Consensus 191 ~~~~v~~s~-d~tv~l~~~~~~~ 212 (839)
++.+..++. .+.|...+.+|..
T Consensus 488 ~~~LYw~D~~~~~I~~~~~dG~~ 510 (628)
T 4a0p_A 488 LGKLFWADSDLRRIESSDLSGAN 510 (628)
T ss_dssp TTEEEEEETTTTEEEEEETTSCS
T ss_pred CCEEEEEeCCCCEEEEEeCCCCc
Confidence 455555544 5788888888754
No 285
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=85.20 E-value=28 Score=36.28 Aligned_cols=162 Identities=12% Similarity=0.093 Sum_probs=94.1
Q ss_pred EEEEcCCCCeEEEEe-cCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEe--CCeEEEE
Q 003205 37 KVACAPFGGPIAVIR-DDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQ--DGTVYRY 113 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~-d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~--dGtv~l~ 113 (839)
..+++|+|+.|+... +. ...+.|..-+.+|.-...|.-+. . ..|+++++-+.-++ .++|.+.
T Consensus 108 ~~~~s~~g~~Iy~~~~~~---------~~~~~Iy~~~~dGs~~~~lt~~~--~----~~~~~~g~~iy~t~~g~~~Iy~~ 172 (302)
T 3s25_A 108 CIYASLIGNYIYYLHYDT---------QTATSLYRIRIDGEEKKKIKNHY--L----FTCNTSDRYFYYNNPKNGQLYRY 172 (302)
T ss_dssp EEEEEEETTEEEEEEESS---------SSCEEEEEEETTSCCCEEEESSC--C----CCSEEETTEEEEECTTTCCEEEE
T ss_pred ccEEEEeCCEEEEEeecC---------CCCceEEEEECCCCCeEEEeCCC--c----eEeeEECCEEEEEeCCCceEEEE
Confidence 457889999999875 11 24678888889998877776543 2 34666666443333 3556666
Q ss_pred eCCCCccccCCCCCccccccCeEEEEEEC-CeEEEEecC---CeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCC
Q 003205 114 NIHAELIEPNASMGKECFEENVVECVFWG-NGVVCVTEA---NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTM 189 (839)
Q Consensus 114 ~~~G~~~~~~~g~~~~~~~~~V~~~~~~~-~G~v~~t~~---~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~ 189 (839)
++.|...+..... ... ..++| +|.++.+.. .+++.++ .++...+.|.+ ....| ++|
T Consensus 173 ~l~g~~~~~l~~~-------~~~-~~~~P~g~~iy~t~~~~~~~I~~~~-ldG~~~~~Lt~-----~~~~~------~~~ 232 (302)
T 3s25_A 173 DTASQSEALFYDC-------NCY-KPVVLDDTNVYYMDVNRDNAIVHVN-INNPNPVVLTE-----ANIEH------YNV 232 (302)
T ss_dssp ETTTTEEEEEECS-------CEE-EEEEEETTEEEEEEGGGTTEEEEEC-SSSCCCEECSC-----SCEEE------EEE
T ss_pred ECCCCCEEEEeCC-------Ccc-ceeeecCCEEEEEEcCCCcEEEEEE-CCCCCeEEEeC-----CCcce------EEE
Confidence 8888764332211 112 23565 666666642 3566554 45555555543 22223 444
Q ss_pred CCcEEEEEEe--CCeEEEEecCCcc--cccCCCceEEEECCCCcEEEEee
Q 003205 190 TGSVEVLIGT--DAGILMLDEDGVQ--KVDDTLSQKMAVSPNGNFVACFT 235 (839)
Q Consensus 190 ~~~~~v~~s~--d~tv~l~~~~~~~--~~~~~~i~~ia~Spng~~iA~~~ 235 (839)
+|..+...+. .+.|+..+.+|.. .+..+.+. ++++-|.+|....
T Consensus 233 ~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~~~~--~i~i~~d~Iy~td 280 (302)
T 3s25_A 233 YGSLIFYQRGGDNPALCVVKNDGTGFKELAKGEFC--NINVTSQYVYFTD 280 (302)
T ss_dssp ETTEEEEEECSSSCEEEEEETTSCCCEEEEESCEE--EEEECSSEEEEEE
T ss_pred CCCEEEEEECCCCcEEEEEECCCCccEEeeCCccc--eEEEeCCEEEEEE
Confidence 8888876643 4688889999864 23223333 4445566665543
No 286
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=84.81 E-value=11 Score=40.89 Aligned_cols=144 Identities=14% Similarity=0.154 Sum_probs=68.5
Q ss_pred ecCCCeEEEEEeCCeEEEE--eCCCCccc-----cCCCCCcccc-ccCeEEEEEECCeEEEEecCCeEEEEe-cCCCc--
Q 003205 95 WSEDQTLICVVQDGTVYRY--NIHAELIE-----PNASMGKECF-EENVVECVFWGNGVVCVTEANRYFCMA-DFATM-- 163 (839)
Q Consensus 95 fs~de~Lv~v~~dGtv~l~--~~~G~~~~-----~~~g~~~~~~-~~~V~~~~~~~~G~v~~t~~~~~~~v~-~~~~~-- 163 (839)
|+.++.++.+.+||+|..| |-.|++=. ...+..++.+ ...|.++..-.+-.++++.++++|.+= |-.+.
T Consensus 7 ~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG 86 (389)
T 3kci_A 7 HSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLG 86 (389)
T ss_dssp --------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTS
T ss_pred ccCcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCC
Confidence 4556667899999999999 56676521 0000000000 224566655556677889999988762 21111
Q ss_pred --------eEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCC--cc---------------cccCCC
Q 003205 164 --------KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDG--VQ---------------KVDDTL 218 (839)
Q Consensus 164 --------~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~--~~---------------~~~~~~ 218 (839)
.+..+.. +.........+ +..+...+.+..+|.||.|-.+. +. .....+
T Consensus 87 ~g~~~~~~~p~~v~~--~~~~~~~~v~i----~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~ 160 (389)
T 3kci_A 87 IGGTESVSTPTLLES--IQHVFIKKVAV----NSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIE 160 (389)
T ss_dssp SSSSCCEEEEEECGG--GTTSCEEEEEE----CTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSC
T ss_pred CCCcCCccCCEEccc--ccCCceeEEEE----CcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCe
Confidence 1122211 10011111112 22455666778899999996542 11 012235
Q ss_pred ceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 219 SQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 219 i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
|..|+.. ..+.+..+.+|+++.|-.+
T Consensus 161 i~~va~G--~~hs~alt~~G~v~~wG~n 186 (389)
T 3kci_A 161 VVDVAAG--GAHSACVTAAGDLYTWGKG 186 (389)
T ss_dssp EEEEEEC--SSEEEEEETTSCEEEEECC
T ss_pred EEEEEeC--cCeEEEEeCCCeEEEeCCC
Confidence 6666655 4577778899999999754
No 287
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=84.79 E-value=12 Score=44.67 Aligned_cols=67 Identities=9% Similarity=-0.056 Sum_probs=47.7
Q ss_pred EEEeCCCCCCCCcEEEEEEeC-----CeEEEEecCCcc----c----ccCCCceEEEECCCCcEEEEeecCC---eEEEE
Q 003205 180 VAVIEPKYTMTGSVEVLIGTD-----AGILMLDEDGVQ----K----VDDTLSQKMAVSPNGNFVACFTHDG---RLVVN 243 (839)
Q Consensus 180 w~vi~~~~S~~~~~~v~~s~d-----~tv~l~~~~~~~----~----~~~~~i~~ia~Spng~~iA~~~~~g---~i~i~ 243 (839)
+..-.+.+||||+.+++...+ ..|+.++..+.+ . .+...+..+.+||||++|++.+.++ .|+++
T Consensus 221 ~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~ 300 (751)
T 2xe4_A 221 GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLL 300 (751)
T ss_dssp EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEE
T ss_pred CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEE
Confidence 333466789999999988875 368888877542 1 1223356889999999999877543 48888
Q ss_pred ecC
Q 003205 244 NTN 246 (839)
Q Consensus 244 ssd 246 (839)
+.+
T Consensus 301 d~~ 303 (751)
T 2xe4_A 301 DLR 303 (751)
T ss_dssp ESS
T ss_pred ECC
Confidence 755
No 288
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=84.71 E-value=65 Score=37.34 Aligned_cols=167 Identities=9% Similarity=-0.072 Sum_probs=94.1
Q ss_pred CCceEEEEcCCCCceeEEEecCCCCCeEEEeecC-CCeEE-EEEeCCeEEEEeCCCCccccCCCCCccccccCeEEEEEE
Q 003205 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSE-DQTLI-CVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFW 141 (839)
Q Consensus 64 ~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~-de~Lv-~v~~dGtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~~ 141 (839)
..+.|..++.+|..+.++.-.. .+...++++.+ .+.|. +-...+.|.+.++.|...+...... -..-..+.+.
T Consensus 57 ~~~~I~r~~~~g~~~~~v~~~g-~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~----l~~P~~iavd 131 (628)
T 4a0p_A 57 SLKTISRAFMNGSALEHVVEFG-LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKD----LDSPRALALD 131 (628)
T ss_dssp TTTEEEEEETTSCSCEEEECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSS----CCCEEEEEEE
T ss_pred CCCeEEEEECCCCCcEEEEeCC-CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCC----CCCcccEEEc
Confidence 5688999999998777665433 24566777765 45664 4455678999999998754433221 2234667777
Q ss_pred C-CeEEEEec---CCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe-CCeEEEEecCCcc----
Q 003205 142 G-NGVVCVTE---ANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDEDGVQ---- 212 (839)
Q Consensus 142 ~-~G~v~~t~---~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~-d~tv~l~~~~~~~---- 212 (839)
+ +|.++.|. ..+++... .++.....+.+ .+ ..|...++ .+ +++.+..+.. .+.|..++.+|..
T Consensus 132 p~~G~lY~tD~g~~~~I~r~~-~dG~~~~~l~~-~~-~~P~Glal-D~----~~~~LY~aD~~~~~I~~~d~dG~~~~v~ 203 (628)
T 4a0p_A 132 PAEGFMYWTEWGGKPKIDRAA-MDGSERTTLVP-NV-GRANGLTI-DY----AKRRLYWTDLDTNLIESSNMLGLNREVI 203 (628)
T ss_dssp TTTTEEEEEECSSSCEEEEEE-TTSCSCEEEEC-SC-SSEEEEEE-ET----TTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cCCCeEEEeCCCCCCEEEEEe-CCCCceEEEEC-CC-CCcceEEE-cc----ccCEEEEEECCCCEEEEEcCCCCceEEe
Confidence 6 78777776 23455443 33333333322 12 33554443 22 5565555554 6788888888753
Q ss_pred -cccCCCceEEEECCCCcEEEEeecCCeEEEEec
Q 003205 213 -KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNT 245 (839)
Q Consensus 213 -~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ss 245 (839)
.....| ..|++..+ ....+=..++.|+..+.
T Consensus 204 ~~~l~~P-~glav~~~-~ly~tD~~~~~I~~~dk 235 (628)
T 4a0p_A 204 ADDLPHP-FGLTQYQD-YIYWTDWSRRSIERANK 235 (628)
T ss_dssp EECCSCE-EEEEEETT-EEEEEETTTTEEEEEET
T ss_pred eccCCCc-eEEEEECC-EEEEecCCCCEEEEEEC
Confidence 111223 36666542 22222223456666653
No 289
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=84.70 E-value=24 Score=39.24 Aligned_cols=76 Identities=8% Similarity=0.068 Sum_probs=48.9
Q ss_pred CCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCC-eEEEEeC-CCCcccc-CCCCCcc--ccccCeEEEEEEC----Ce
Q 003205 74 AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDG-TVYRYNI-HAELIEP-NASMGKE--CFEENVVECVFWG----NG 144 (839)
Q Consensus 74 ~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dG-tv~l~~~-~G~~~~~-~~g~~~~--~~~~~V~~~~~~~----~G 144 (839)
.|-.+..+.-.- ....+|.|.|||.|+++...| .|++++. .|+.... .+..... .-+.+...+.+.+ +|
T Consensus 15 ~gf~~~~~a~~l--~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g 92 (454)
T 1cru_A 15 ENFDKKVILSNL--NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP 92 (454)
T ss_dssp TTSCEEEEECCC--SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSC
T ss_pred CCeEEEEEECCC--CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCC
Confidence 455555554322 678999999999998888886 6888865 4654221 1111000 0156788899987 78
Q ss_pred EEEEecC
Q 003205 145 VVCVTEA 151 (839)
Q Consensus 145 ~v~~t~~ 151 (839)
.+.++.+
T Consensus 93 ~lYv~~s 99 (454)
T 1cru_A 93 YIYISGT 99 (454)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8887753
No 290
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=84.55 E-value=1.5 Score=48.69 Aligned_cols=106 Identities=17% Similarity=0.097 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHcCCcchHHhHHhHcCCChHHHHHHHHHHHHhCCChhHHHHhhccCCCCCCchHHHHHHHhcCCHHHHHH
Q 003205 693 SISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALK 772 (839)
Q Consensus 693 Sl~~ti~~l~~~~~~k~a~~l~k~fkvsdkr~~~~kl~ala~~~~w~~L~~f~~~KKspIgyepfv~~~~~~~~~~ea~~ 772 (839)
.....-..|...|..+.|..+=+.- ..|.....+|++.|+|++-..-+..-.+|-.|...+.+|+..|..++|..
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~ 198 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQM 198 (449)
T ss_dssp -------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHH
Confidence 3455556677788888888876644 48999999999999997765444323588889999999999999999976
Q ss_pred hhccCC-CH---HHHHHHHHHcCCHHHHHHHHHhc
Q 003205 773 YIPKLV-DP---RERAEAYARIGMAKEAADAASQA 803 (839)
Q Consensus 773 yI~~i~-d~---~~r~~~~~~~~~~~~A~~~a~~~ 803 (839)
....+- .+ ++-+++|.+.|.|.+|+....+.
T Consensus 199 ~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 199 CGLHIVVHADELEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 655543 33 55667899999999998876554
No 291
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=82.91 E-value=53 Score=34.92 Aligned_cols=30 Identities=13% Similarity=0.133 Sum_probs=22.1
Q ss_pred eEEEeecCCCeEEEEEe--------------CCeEEEEeCCCCc
Q 003205 90 LIGMSWSEDQTLICVVQ--------------DGTVYRYNIHAEL 119 (839)
Q Consensus 90 I~~~~fs~de~Lv~v~~--------------dGtv~l~~~~G~~ 119 (839)
.-.|.|.|||.|.+... .|.|..++.+|+.
T Consensus 137 ~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~ 180 (354)
T 3a9g_A 137 GGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP 180 (354)
T ss_dssp CCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC
T ss_pred CceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC
Confidence 45788999999865543 2678888888864
No 292
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=81.90 E-value=30 Score=40.70 Aligned_cols=84 Identities=14% Similarity=0.116 Sum_probs=49.1
Q ss_pred EEEEcCCCCeEEEEecCchhhh--hh----c-ccCCceEEEEcC-CCCceeEEEecCC-------CCCeEEEeecCCCe-
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQ--LY----A-ESALRKLRIFNS-AGVLISETVWKNP-------GGRLIGMSWSEDQT- 100 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~--~~----~-~~~~~~I~iy~~-~G~ll~ti~~~~~-------~~~I~~~~fs~de~- 100 (839)
.+++.|.++.|.+......+-. .. + .-.-..|.-++. +|+.+++++.... ...++......+|+
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~ 318 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP 318 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence 4678888888877653211000 00 0 001125888885 6999998875320 02233333334664
Q ss_pred ---EEEEEeCCeEEEEe-CCCCcc
Q 003205 101 ---LICVVQDGTVYRYN-IHAELI 120 (839)
Q Consensus 101 ---Lv~v~~dGtv~l~~-~~G~~~ 120 (839)
+++++.+|.++++| -.|+++
T Consensus 319 ~~~v~~~~~~G~l~~lD~~tG~~l 342 (689)
T 1yiq_A 319 RKVLMQAPKNGFFYVIDRATGELL 342 (689)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEE
T ss_pred EEEEEEECCCCeEEEEECCCCCEe
Confidence 56888999999998 478874
No 293
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=81.73 E-value=12 Score=39.73 Aligned_cols=130 Identities=9% Similarity=0.144 Sum_probs=79.8
Q ss_pred CeEEEEEeC----CeEEEEeCCC-C-ccccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEecCCCceEEEcCCCC
Q 003205 99 QTLICVVQD----GTVYRYNIHA-E-LIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPE 172 (839)
Q Consensus 99 e~Lv~v~~d----Gtv~l~~~~G-~-~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~ 172 (839)
++.+||-+. ..|.+.|+.- + ..+..+.- + .|-..|+-.+++...++...+-|++... +|.+..
T Consensus 36 DkyicVrE~~~~~~~VvIiDl~n~~~~~Rrpi~A--d-------sAIMnP~~~ViALrag~~LQiFnletK~--klks~~ 104 (365)
T 2xzh_A 36 DKFICIREKVGEQAQVVIIDMNDPSNPIRRPISA--D-------SAIMNPASKVIALKAGKTLQIFNIEMKS--KMKAHT 104 (365)
T ss_dssp TTEEEEEEEETTEEEEEEEETTSTTSCEEEECCC--S-------EEEECSSSSEEEEEETTEEEEEETTTTE--EEEEEE
T ss_pred CceEEEEecCCCCCEEEEEECCCCCCcccccccc--c-------eeeeCCCccEEEEecCCeEEEechHHhh--hhccee
Confidence 345555542 2677778643 2 22333322 1 3445676666666667777777776431 222222
Q ss_pred CCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----------cccCCCceEEEECCCCcEEEEeec---C--
Q 003205 173 VEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----------KVDDTLSQKMAVSPNGNFVACFTH---D-- 237 (839)
Q Consensus 173 ~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----------~~~~~~i~~ia~Spng~~iA~~~~---~-- 237 (839)
+..+..-|.-+++ +++.++. +..||+|+..|.. ......|..-..+++++.+++.+- +
T Consensus 105 ~~e~VvfWkWis~------~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~ 177 (365)
T 2xzh_A 105 MTDDVTFWKWISL------NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR 177 (365)
T ss_dssp CSSCEEEEEECSS------SEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTE
T ss_pred cCCccEEEEecCC------CeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCc
Confidence 3245678988865 5666654 5668999988743 234566888899999998877653 3
Q ss_pred --CeEEEEecC
Q 003205 238 --GRLVVNNTN 246 (839)
Q Consensus 238 --g~i~i~ssd 246 (839)
|.+.++|.+
T Consensus 178 v~G~mQLYS~e 188 (365)
T 2xzh_A 178 VVGAMQLYSVD 188 (365)
T ss_dssp EEEEEEEEETT
T ss_pred cceeEEEEeec
Confidence 568888865
No 294
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=81.51 E-value=14 Score=39.52 Aligned_cols=54 Identities=11% Similarity=0.101 Sum_probs=32.3
Q ss_pred ceEEEEcCCCC-------ceeEEEe-cCCCCCeEEEeecCCCeEEEEEeC--------------CeEEEEeCCCCc
Q 003205 66 RKLRIFNSAGV-------LISETVW-KNPGGRLIGMSWSEDQTLICVVQD--------------GTVYRYNIHAEL 119 (839)
Q Consensus 66 ~~I~iy~~~G~-------ll~ti~~-~~~~~~I~~~~fs~de~Lv~v~~d--------------Gtv~l~~~~G~~ 119 (839)
+.|..|+.+|. ++..++. .........+.|.|||.|.+...| |.|..++..|+.
T Consensus 105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~ 180 (352)
T 2ism_A 105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEP 180 (352)
T ss_dssp EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB
T ss_pred cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCC
Confidence 56777776653 2222431 010123468899999998655432 678888888854
No 295
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=80.43 E-value=56 Score=38.12 Aligned_cols=57 Identities=16% Similarity=0.067 Sum_probs=41.6
Q ss_pred CeEEEEecCC-cc---cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCC
Q 003205 201 AGILMLDEDG-VQ---KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCE 257 (839)
Q Consensus 201 ~tv~l~~~~~-~~---~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~ 257 (839)
++|+.||... .. .....++....++..|..+..++.+|.++.++.+.++.+.++.+.
T Consensus 438 g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 7788888653 32 222344555566667788888899999999999888988887765
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=80.02 E-value=38 Score=35.92 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=43.9
Q ss_pred CCCcEEEEEEeC-CeEEEEecCCcc----cccC------CCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 189 MTGSVEVLIGTD-AGILMLDEDGVQ----KVDD------TLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 189 ~~~~~~v~~s~d-~tv~l~~~~~~~----~~~~------~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
++|+.-|.-+.. +.|+.++.+|.. .... ...+.|+++|+|+.|......|.|+.++.+
T Consensus 146 ~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 146 RDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp TTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred CCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 489999988888 999999999874 1111 126799999999876666558889888755
No 297
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=79.63 E-value=6.3 Score=39.50 Aligned_cols=108 Identities=13% Similarity=0.126 Sum_probs=58.2
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeC-
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNI- 115 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~- 115 (839)
.+|+.|+|-+.|+ ++ -++......+..+ .+|=.+++.|.+.-|+. -.++.|.|++.|..+ +||.|+.++.
T Consensus 45 ~laf~P~G~LYaV-~~-G~Ly~~~~~t~~~--~~W~~s~t~IG~~Gw~~----F~a~~fD~~G~LYav-~dG~iyr~~pP 115 (236)
T 1tl2_A 45 FLFLSPGGELYGV-LN-DKIYKGTPPTHDN--DNWMGRAKKIGNGGWNQ----FQFLFFDPNGYLYAV-SKDKLYKASPP 115 (236)
T ss_dssp EEEECTTSCEEEE-ET-TEEEEESCCCSTT--CCHHHHCEEEECSCGGG----CSEEEECTTSCEEEE-ETTEEEEESCC
T ss_pred eEEECCCccEEEE-eC-CeEEEECCCCCCc--ccccccccEeccccccc----ceEEEECCCCCEEEe-CCCEEEEeCCC
Confidence 8999999999999 42 1111111000000 11222245555556654 256678899999777 7799987864
Q ss_pred -CCCccccCCCCCccccc---cCeEEEEEECCeEEEEecCCeEE
Q 003205 116 -HAELIEPNASMGKECFE---ENVVECVFWGNGVVCVTEANRYF 155 (839)
Q Consensus 116 -~G~~~~~~~g~~~~~~~---~~V~~~~~~~~G~v~~t~~~~~~ 155 (839)
.|.- +.++....+-+ ..+..+.+.++|.+.+..++++|
T Consensus 116 ~~~~~--~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~dg~ly 157 (236)
T 1tl2_A 116 QSDTD--NWIARATEVGSGGWSGFKFLFFHPNGYLYAVHGQQFY 157 (236)
T ss_dssp CSTTC--CHHHHSEEEECSSGGGEEEEEECTTSCEEEEETTEEE
T ss_pred cCCCC--ceeccccEeccCCCCceEEEEECCCceEEEEeCCcEE
Confidence 2221 12111100001 23455566678877666566655
No 298
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=79.22 E-value=83 Score=34.83 Aligned_cols=148 Identities=11% Similarity=0.117 Sum_probs=83.7
Q ss_pred CCeEEEeecCCCeEEEEEeCCeEEEE--eCCCCc-cccC---------------------------CCCCccc--c----
Q 003205 88 GRLIGMSWSEDQTLICVVQDGTVYRY--NIHAEL-IEPN---------------------------ASMGKEC--F---- 131 (839)
Q Consensus 88 ~~I~~~~fs~de~Lv~v~~dGtv~l~--~~~G~~-~~~~---------------------------~g~~~~~--~---- 131 (839)
.+|+.++-- ..+.+.+++||.|+.| +-.|++ .... .+..++. +
T Consensus 67 ~~i~~va~G-~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~ 145 (473)
T 3of7_A 67 AKIISFAVG-GMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLA 145 (473)
T ss_dssp TCEEEEEEC-SSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHH
T ss_pred CCEEEEEeC-CCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCccc
Confidence 468877765 5567888999999999 556655 1110 0100110 1
Q ss_pred -ccCeEEEEEECCeEEEEecCCeEEEEec---CCC------------ceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEE
Q 003205 132 -EENVVECVFWGNGVVCVTEANRYFCMAD---FAT------------MKVCELARPEVEELPHCVAVIEPKYTMTGSVEV 195 (839)
Q Consensus 132 -~~~V~~~~~~~~G~v~~t~~~~~~~v~~---~~~------------~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v 195 (839)
...|.++..-.+-.+++|.++++|.+-. -.+ +.+..++. + .....-.| . ......+
T Consensus 146 ~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~--l-~~~~i~~v-a----~G~~hs~ 217 (473)
T 3of7_A 146 EGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPT--F-SKYNIVQL-A----PGKDHIL 217 (473)
T ss_dssp TTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCC--C-CSSCEEEE-E----ECSSEEE
T ss_pred CCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccc--c-CCCCEEEE-E----ecCCeEE
Confidence 2467777777788888999999987642 111 01111111 1 01011111 1 1334556
Q ss_pred EEEeCCeEEEEecCC--cc-c---------------ccCCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 196 LIGTDAGILMLDEDG--VQ-K---------------VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 196 ~~s~d~tv~l~~~~~--~~-~---------------~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
.+..+|.||.|-... +. . .....|..|+.. +.+.+..+.+|.++.|-.+
T Consensus 218 alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G--~~hs~alt~~G~v~~wG~n 284 (473)
T 3of7_A 218 FLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASG--ENHCFALTKDNKLVSWGLN 284 (473)
T ss_dssp EEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEEC--SSEEEEEETTSCEEEEEEC
T ss_pred EEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecC--CCeEEEEecCCCEEEeCCC
Confidence 667789999996552 21 0 011346666665 4477777889999999654
No 299
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=79.19 E-value=60 Score=34.24 Aligned_cols=65 Identities=12% Similarity=0.215 Sum_probs=41.3
Q ss_pred CCeEEEeecC----CCeEEEEEeCCeEEEEeCCCCcc--------ccCCCCCccccccCeEEEEEEC--CeEEEEecCCe
Q 003205 88 GRLIGMSWSE----DQTLICVVQDGTVYRYNIHAELI--------EPNASMGKECFEENVVECVFWG--NGVVCVTEANR 153 (839)
Q Consensus 88 ~~I~~~~fs~----de~Lv~v~~dGtv~l~~~~G~~~--------~~~~g~~~~~~~~~V~~~~~~~--~G~v~~t~~~~ 153 (839)
..|+++--.+ +..+++++.+|.++.-++. +|. -..+.. .+.+..+.... +-++++|..++
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~-~~~~~~r~G~~~i~lke-----~D~lv~~~~~~~~d~ill~T~~G~ 168 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLT-DFDSNRSGGIVAVNLRD-----NDELVGAVLCSAGDDLLLVSANGQ 168 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGG-GGCCCCSSCEESCBCCT-----TCCEEEEEEECTTCEEEEEETTSE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHH-HhhccccCceEEEEECC-----CCEEEEEEEecCCCEEEEEECCCe
Confidence 5677774433 4468999999999988643 121 111111 44566665543 66888899999
Q ss_pred EEEEe
Q 003205 154 YFCMA 158 (839)
Q Consensus 154 ~~~v~ 158 (839)
.+.+.
T Consensus 169 ~~rf~ 173 (327)
T 3uc1_A 169 SIRFS 173 (327)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87665
No 300
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=78.77 E-value=2 Score=46.46 Aligned_cols=61 Identities=8% Similarity=0.066 Sum_probs=27.5
Q ss_pred CCcEEEEEEeCCeEEEEec-CCcc--cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCc
Q 003205 190 TGSVEVLIGTDAGILMLDE-DGVQ--KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSP 250 (839)
Q Consensus 190 ~~~~~v~~s~d~tv~l~~~-~~~~--~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~ 250 (839)
+++.++..+.|++|+.||. +|.. ....+++....+.++|..++..+.+|+|+.|+..-++.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~ 71 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG 71 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEECTTTCCEEEC-----CC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEEeCCCCEEEEEECCCCce
Confidence 4555666666667777764 3433 11114454555556665555555666666665433333
No 301
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=78.65 E-value=37 Score=37.39 Aligned_cols=159 Identities=11% Similarity=0.140 Sum_probs=90.9
Q ss_pred CCCCeEEEEecCchhhhhhcccCCceEEEEcCC-CCceeEEEecC--CCCCeEEEeecCCCeEEEEEeCCeEEEEeCC-C
Q 003205 42 PFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISETVWKN--PGGRLIGMSWSEDQTLICVVQDGTVYRYNIH-A 117 (839)
Q Consensus 42 p~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~-G~ll~ti~~~~--~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~-G 117 (839)
+.+..+.+.++.++++.. .++.||.-+.. +.--.++.... .++.|..+--||+|.|+++..+.+|.|..+. |
T Consensus 21 ~s~R~~~~~~n~t~i~~a----~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~ 96 (452)
T 3pbp_A 21 QSPRYIFSSQNGTRIVFI----QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWG 96 (452)
T ss_dssp -CCEEEEEETTTTEEEEE----ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTT
T ss_pred CCCcEEEEEcCCCEEEEE----ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCc
Confidence 444455555555544433 36889988754 65666666652 2357888999999999988899999999765 3
Q ss_pred Ccc-------------ccCCCCCccccccCeEEEEEEC-----CeEEEEecCCeE--EEEe-cCCCceEEEcCCC--CCC
Q 003205 118 ELI-------------EPNASMGKECFEENVVECVFWG-----NGVVCVTEANRY--FCMA-DFATMKVCELARP--EVE 174 (839)
Q Consensus 118 ~~~-------------~~~~g~~~~~~~~~V~~~~~~~-----~G~v~~t~~~~~--~~v~-~~~~~~~~~l~~~--~~~ 174 (839)
.-. .+.+|....--...|..+.++| ..+|++|.++.+ |-+. .++.|. .|... .++
T Consensus 97 ~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~--~L~k~~~~fg 174 (452)
T 3pbp_A 97 YSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI--VLNKPNNSFG 174 (452)
T ss_dssp CSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE--EESCCCSEEE
T ss_pred cccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc--chhccccccC
Confidence 210 1233210000035688888765 577888888765 3333 232343 33221 011
Q ss_pred CCCceEEEeCCCCCCCCcEEEEEE--eCCeEEEE
Q 003205 175 ELPHCVAVIEPKYTMTGSVEVLIG--TDAGILML 206 (839)
Q Consensus 175 ~~~~~w~vi~~~~S~~~~~~v~~s--~d~tv~l~ 206 (839)
.......|.+..|+.+|=++-.+. .+|.||.+
T Consensus 175 ~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 175 LDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp SCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred CCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 112223344445666665555545 57788765
No 302
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=78.11 E-value=1.2e+02 Score=35.93 Aligned_cols=173 Identities=10% Similarity=0.028 Sum_probs=86.8
Q ss_pred eEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCCC-CccccCCCCC--ccccccCeEEEEEECC
Q 003205 67 KLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHA-ELIEPNASMG--KECFEENVVECVFWGN 143 (839)
Q Consensus 67 ~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G-~~~~~~~g~~--~~~~~~~V~~~~~~~~ 143 (839)
-|..|+..+..+..+........|.++...+++.|.+++.++-+.+|+..+ ++..+..... .......|.++..-++
T Consensus 194 Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~ 273 (795)
T 4a2l_A 194 GLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQ 273 (795)
T ss_dssp CEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTT
T ss_pred CEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCC
Confidence 355555444433332111112568889888899998888654477788654 3433322110 0000345766655555
Q ss_pred eEEEEecCCeEEEEecCCCceEEEcCCCC-----CCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc------
Q 003205 144 GVVCVTEANRYFCMADFATMKVCELARPE-----VEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------ 212 (839)
Q Consensus 144 G~v~~t~~~~~~~v~~~~~~~~~~l~~~~-----~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~------ 212 (839)
|.+.+...+-++.++. .......+...+ + .....+++.. .++|. +-+.+.+++|..++.....
T Consensus 274 g~lWigt~~Gl~~~~~-~~~~~~~~~~~~~~~~~l-~~~~i~~i~~---D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~ 347 (795)
T 4a2l_A 274 NRLWIGTFNDLNIYHE-GTDSFASYSSNPVENGSL-SQRSVRSIFM---DSQGG-MWLGTYFGGLNYYHPIRNRFKNIRN 347 (795)
T ss_dssp SCEEEEESSCEEEEET-TTTEEEEECCCTTSTTSC-SSSCEEEEEE---CTTSC-EEEEESSSCEEEECGGGGSSEEECC
T ss_pred CCEEEEeCChhheEcC-CCCeEEEEecCCCCCCCC-CCCcEEEEEE---eCCcC-EEEEECCCCeEEeCCCcccceEEcC
Confidence 5554433335555542 233333442211 1 2233455532 11444 2233446788888765432
Q ss_pred -----cccCCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 213 -----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 213 -----~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
......|..|...++|.+- +++.+|-|..++.+
T Consensus 348 ~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~ 385 (795)
T 4a2l_A 348 IPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPI 385 (795)
T ss_dssp CTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTT
T ss_pred CCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCC
Confidence 1123457788888887543 34555556666544
No 303
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=77.43 E-value=35 Score=38.40 Aligned_cols=149 Identities=8% Similarity=0.118 Sum_probs=80.0
Q ss_pred CeEEEeecCC--CeEEEEEeC-CeEEEEeCCCCccccCCCCCccccccCeEEEEE-------ECCeE-EEEecCC-----
Q 003205 89 RLIGMSWSED--QTLICVVQD-GTVYRYNIHAELIEPNASMGKECFEENVVECVF-------WGNGV-VCVTEAN----- 152 (839)
Q Consensus 89 ~I~~~~fs~d--e~Lv~v~~d-Gtv~l~~~~G~~~~~~~g~~~~~~~~~V~~~~~-------~~~G~-v~~t~~~----- 152 (839)
....|.|+|. ++|.++..+ +.|+++|+.++..+...+.... .-.....+.| .++|- ++++...
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~-~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTI-PTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTS-SCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCcc-ccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 4679999983 557555553 5688889877664443322100 0224567777 77665 5555432
Q ss_pred ---eEEEEecCC-C-----ceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEE-eCCeEEEEecC--------Ccc--
Q 003205 153 ---RYFCMADFA-T-----MKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIG-TDAGILMLDED--------GVQ-- 212 (839)
Q Consensus 153 ---~~~~v~~~~-~-----~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s-~d~tv~l~~~~--------~~~-- 212 (839)
.++.+..-. + +....++. . ..|+..++ .| ++..+.+.. .++.|+.++.+ +..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~--~-~~p~giav-dp----~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t 290 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA--Y-KQCNGATI-HP----INGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD 290 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE--E-SCCCCEEE-CT----TTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred cCceEEEEecCCCCceeecccceeecc--C-CCceEEEE-cC----CCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence 155553211 0 10122321 1 33454433 33 455554444 47779999875 211
Q ss_pred --------------cc-cCCCceEEEECCCCcE-EEEeecCCeEEEEecC
Q 003205 213 --------------KV-DDTLSQKMAVSPNGNF-VACFTHDGRLVVNNTN 246 (839)
Q Consensus 213 --------------~~-~~~~i~~ia~Spng~~-iA~~~~~g~i~i~ssd 246 (839)
.. ....-..|+|+|+|+. ..+-+.++.|+.++.|
T Consensus 291 p~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 291 PIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp CBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 01 1123468999999984 2333456678886654
No 304
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=77.08 E-value=78 Score=33.36 Aligned_cols=219 Identities=11% Similarity=0.115 Sum_probs=114.4
Q ss_pred CCeEEEeecC-CCeEEEEEeCCeEEEEe---CC-------CCccccCCCCCccccccCeEEEEEEC-----CeEEEEecC
Q 003205 88 GRLIGMSWSE-DQTLICVVQDGTVYRYN---IH-------AELIEPNASMGKECFEENVVECVFWG-----NGVVCVTEA 151 (839)
Q Consensus 88 ~~I~~~~fs~-de~Lv~v~~dGtv~l~~---~~-------G~~~~~~~g~~~~~~~~~V~~~~~~~-----~G~v~~t~~ 151 (839)
+.+..+.-+. .+.|++.++.|.++... +. |......+... + .+.|..+-..+ .-++++|.+
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~--~e~i~~~~~~~~~~~e~~~v~~T~~ 118 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-P--EERIAQVIQIRGYTDAPYLVLATRN 118 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-T--TCCEEEEEEESSTTSSSEEEEEETT
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-C--CCEEEEEEEeccCCCCCEEEEEcCC
Confidence 3455444433 45688899999877553 21 22211111111 1 45676654432 346677778
Q ss_pred CeEEEEe--cCCCceEEEcCCCCCCCCCc-eEEEeCCCCCCCCcEEEEEEeCCeEEEEecC--Ccc------------c-
Q 003205 152 NRYFCMA--DFATMKVCELARPEVEELPH-CVAVIEPKYTMTGSVEVLIGTDAGILMLDED--GVQ------------K- 213 (839)
Q Consensus 152 ~~~~~v~--~~~~~~~~~l~~~~~~~~~~-~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~--~~~------------~- 213 (839)
|-+..+. .+..++-.-+....+..... ....... +.+.+++++..|.++.+... ... .
T Consensus 119 G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~----~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L 194 (327)
T 3uc1_A 119 GLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCS----AGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRF 194 (327)
T ss_dssp SEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEEC----TTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCC
T ss_pred CEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEec----CCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecC
Confidence 8766554 33322100010111211211 1222221 45678888889998888776 332 0
Q ss_pred ccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCC--CCCCceeeec-CceEEEEe----cCEEEEEcC
Q 003205 214 VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESA--LPPEQIAWCG-MDSVLLYW----NDMLVMVAP 286 (839)
Q Consensus 214 ~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~--~~p~~~~WcG-~d~vv~~~----~~~l~lig~ 286 (839)
.....|..+..-++++.+.+.|.+|.++....+ +|..... .....|.--. +|.++..+ ++++.++..
T Consensus 195 ~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~------e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~ 268 (327)
T 3uc1_A 195 NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIE------EYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTS 268 (327)
T ss_dssp CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGG------GSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEG
T ss_pred CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHH------HccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcC
Confidence 123446777666666789999999998877522 2321100 0011111111 23333222 257889999
Q ss_pred CCCceEeccCCCeEEeecCCceEEEccCcceee
Q 003205 287 QAEPVQYFYDEPLVLIPECDGVRILSNSSMEFL 319 (839)
Q Consensus 287 ~~~~v~f~~~~~~~l~~E~DGvRIit~~~~~~l 319 (839)
.|..+.|..+.....-----|+|++.....+.+
T Consensus 269 ~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~v 301 (327)
T 3uc1_A 269 GGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTL 301 (327)
T ss_dssp GGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCE
T ss_pred CCeEEEEehhhccccCCCCCCeEeEecCCCCEE
Confidence 999999977654443333347888887655443
No 305
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=77.05 E-value=76 Score=33.21 Aligned_cols=101 Identities=14% Similarity=0.029 Sum_probs=57.9
Q ss_pred HHHcCCcchHHhHH-hHcCCC--hHHHHHHHHHHHHhCCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHH
Q 003205 701 CIVLGNHRAAMKVK-TEFKVS--EKRWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALK 772 (839)
Q Consensus 701 l~~~~~~k~a~~l~-k~fkvs--dkr~~~~kl~ala~~~~w~~L~~f~~~-----KKspIgyepfv~~~~~~~~~~ea~~ 772 (839)
+...|+.+.|...- +-.++. ....|......+.+.|++++-...... ...+-.|.-...++.+.|+.++|..
T Consensus 247 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 326 (388)
T 1w3b_A 247 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 326 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 34456655544432 222222 234566677788888888776555432 1222334445666777888888876
Q ss_pred hhccC----CC-H---HHHHHHHHHcCCHHHHHHHHH
Q 003205 773 YIPKL----VD-P---RERAEAYARIGMAKEAADAAS 801 (839)
Q Consensus 773 yI~~i----~d-~---~~r~~~~~~~~~~~~A~~~a~ 801 (839)
+..++ |+ . ......|.+.|++.+|++...
T Consensus 327 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66543 22 1 455667777777777776543
No 306
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=76.24 E-value=85 Score=35.19 Aligned_cols=61 Identities=11% Similarity=0.324 Sum_probs=40.0
Q ss_pred CEEEEcCC-CC-eEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecC--CCCCeEEEee-------cCCCe-EEE
Q 003205 36 NKVACAPF-GG-PIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKN--PGGRLIGMSW-------SEDQT-LIC 103 (839)
Q Consensus 36 ~~va~sp~-Gg-~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~--~~~~I~~~~f-------s~de~-Lv~ 103 (839)
..+++.|. ++ +.+..+ ....|++.+..++.+.++.-.. ....+..++| ++++. |++
T Consensus 142 ~~la~dp~~~~~Lyv~~~------------~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyv 209 (496)
T 3kya_A 142 GRLAFDPLNKDHLYICYD------------GHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIV 209 (496)
T ss_dssp EEEEEETTEEEEEEEEEE------------TEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEE
T ss_pred CEEEEccCCCCEEEEEEC------------CCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEE
Confidence 36777773 44 333333 2367999999888888864322 1236899999 99998 666
Q ss_pred EEeCC
Q 003205 104 VVQDG 108 (839)
Q Consensus 104 v~~dG 108 (839)
....+
T Consensus 210 ad~~~ 214 (496)
T 3kya_A 210 AIDYD 214 (496)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 65554
No 307
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=76.24 E-value=85 Score=33.49 Aligned_cols=177 Identities=12% Similarity=0.170 Sum_probs=90.0
Q ss_pred CceEEEEcCCCCceeEEEecCCCCCeEEEeecC----CCe---EEEEEe----CCeEEEEeCC---CCccccCC---CCC
Q 003205 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSE----DQT---LICVVQ----DGTVYRYNIH---AELIEPNA---SMG 127 (839)
Q Consensus 65 ~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~----de~---Lv~v~~----dGtv~l~~~~---G~~~~~~~---g~~ 127 (839)
++-+.+|+.+|+++..++. +++..+..-| .++ ++.++. ++++.+|+++ +++..... +-.
T Consensus 49 ~~gL~Vydl~G~~l~~~~~----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~ 124 (355)
T 3amr_A 49 KSGLVVYSLDGKMLHSYNT----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIA 124 (355)
T ss_dssp TTEEEEEETTSCEEEEECC----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEE
T ss_pred CCCEEEEcCCCcEEEEccC----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcC
Confidence 5679999999999999863 4554444443 343 555555 5689999654 44422211 100
Q ss_pred ccccccCeEEEEE--EC-Ce--EEEEec-CCeE--EEEecCC-C----ceEEEcCCCCCCCCCceEEEeCCCCCCCCcEE
Q 003205 128 KECFEENVVECVF--WG-NG--VVCVTE-ANRY--FCMADFA-T----MKVCELARPEVEELPHCVAVIEPKYTMTGSVE 194 (839)
Q Consensus 128 ~~~~~~~V~~~~~--~~-~G--~v~~t~-~~~~--~~v~~~~-~----~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~ 194 (839)
.+ ...+..+++ .+ +| .++++. ++++ |.+..-. + ...+.|. +++.+.. |+..+ ....+
T Consensus 125 t~--~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~---lgsq~Eg-cvvDd----~~g~L 194 (355)
T 3amr_A 125 TA--INEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK---MNSQTEG-MAADD----EYGRL 194 (355)
T ss_dssp CC--CSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE---CSSCEEE-EEEET----TTTEE
T ss_pred CC--CCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec---CCCCcce-EEEcC----CCCeE
Confidence 00 023333444 23 45 244443 4444 3343311 1 1233333 3344443 34443 44555
Q ss_pred EEEEeCCeEEEEecC--C----cc--cccC----CCceEEEE--CCCCc--EEEEeecCCeEEEEecC-CCCcccccc
Q 003205 195 VLIGTDAGILMLDED--G----VQ--KVDD----TLSQKMAV--SPNGN--FVACFTHDGRLVVNNTN-FSSPVIDES 255 (839)
Q Consensus 195 v~~s~d~tv~l~~~~--~----~~--~~~~----~~i~~ia~--Spng~--~iA~~~~~g~i~i~ssd-~~~~l~e~~ 255 (839)
.+.-.+..|+.++.+ + .. .... ..+..|++ .++|+ .+|+-..+.++.|++.. -.+.+..|.
T Consensus 195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 555557777777744 2 11 1111 24677777 66666 34443345677787653 233344443
No 308
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=75.20 E-value=90 Score=33.19 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=24.6
Q ss_pred HHHHHHhcCCHHHHHHhhccC----CC-H---HHHHHHHHHcCCHHHHHHHHH
Q 003205 757 FVEACVDADEKGEALKYIPKL----VD-P---RERAEAYARIGMAKEAADAAS 801 (839)
Q Consensus 757 fv~~~~~~~~~~ea~~yI~~i----~d-~---~~r~~~~~~~~~~~~A~~~a~ 801 (839)
...++.+.|+.++|..++.++ ++ . -.+..+|.+.|++.+|++...
T Consensus 301 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 353 (450)
T 2y4t_A 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 353 (450)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 345556666666665555542 11 1 445556666666666665543
No 309
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=74.98 E-value=97 Score=33.43 Aligned_cols=147 Identities=12% Similarity=0.068 Sum_probs=80.8
Q ss_pred CeEEEeecCCCeEEEEEeCCeEEEE--eCCCCccc-c----CCCCCcccc-ccCeEEEEEECCeEEEEecCCeEEEEe-c
Q 003205 89 RLIGMSWSEDQTLICVVQDGTVYRY--NIHAELIE-P----NASMGKECF-EENVVECVFWGNGVVCVTEANRYFCMA-D 159 (839)
Q Consensus 89 ~I~~~~fs~de~Lv~v~~dGtv~l~--~~~G~~~~-~----~~g~~~~~~-~~~V~~~~~~~~G~v~~t~~~~~~~v~-~ 159 (839)
+|+.++-. ..+.+.+++||.|+.| +-.|++-. . ..+..++.+ ...|..+..-.+-.+++|.++++|.+= |
T Consensus 122 ~i~~ia~G-~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n 200 (406)
T 4d9s_A 122 RIKQIACG-DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWG 200 (406)
T ss_dssp CEEEEEEC-SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred CEEEEEEC-hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCC
Confidence 67777765 5677889999999999 45666511 0 000001101 225666666567778889999988662 2
Q ss_pred CCCc----------eEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCC--cc---------------
Q 003205 160 FATM----------KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDG--VQ--------------- 212 (839)
Q Consensus 160 ~~~~----------~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~--~~--------------- 212 (839)
..+. .+.++.. + .....-.| . ......+.+..++.||.|-.+. +.
T Consensus 201 ~~GqlG~g~~~~~~~p~~v~~--~-~~~~i~~v-a----~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~ 272 (406)
T 4d9s_A 201 RYGNLGLGDRTDRLVPERVTS--T-GGEKMSMV-A----CGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLE 272 (406)
T ss_dssp TTSTTCSSSSCCEEEEEECCC--S-TTCCEEEE-E----ECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred CCCCCCCCCCCCcCccEEecc--c-CCceEEEE-E----ECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEec
Confidence 1111 1111111 0 00110111 1 1233445667789999996542 21
Q ss_pred cccCCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 213 KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 213 ~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
......|..|+... .+.+..+.+|+++.|-.+
T Consensus 273 ~~~~~~v~~i~~G~--~hs~alt~~G~v~~wG~n 304 (406)
T 4d9s_A 273 ALSNSFISQISGGW--RHTMALTSDGKLYGWGWN 304 (406)
T ss_dssp GGTTSCEEEEEECS--SEEEEEETTSCEEEEECC
T ss_pred ccCCCCEEEEEecC--CEEEEEcCCCeEEEeeCC
Confidence 11233466666553 466677899999999754
No 310
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=74.83 E-value=25 Score=38.81 Aligned_cols=100 Identities=7% Similarity=0.083 Sum_probs=65.4
Q ss_pred EEEECCeEEEEecCCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc-----
Q 003205 138 CVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----- 212 (839)
Q Consensus 138 ~~~~~~G~v~~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----- 212 (839)
|-..|.-.+++...++...+-|++... ++.+..+..+...|..+++ +++.++. +..||+|+..|..
T Consensus 71 AIMnP~~~iiALrag~~lQiFnle~K~--klks~~~~e~VvfWkWis~------~~l~lVT-~taVyHWsi~~~s~P~kv 141 (494)
T 1bpo_A 71 AIMNPASKVIALKAGKTLQIFNIEMKS--KMKAHTMTDDVTFWKWISL------NTVALVT-DNAVYHWSMEGESQPVKM 141 (494)
T ss_dssp EEECSSSSCEEEEETTEEEEEETTTTE--EEEEEECSSCCCEEEEEET------TEEEEEC-SSEEEEEESSSSCCCEEE
T ss_pred eeeCCCCcEEEEecCCeEEEEchHHhh--hhcceecCCCceEEEecCC------CeEEEEc-CCeeEEecccCCCCchhh
Confidence 445665566666667777777776421 2222122246778988875 5566554 5669999998743
Q ss_pred -----cccCCCceEEEECCCCcEEEEeec---C----CeEEEEecC
Q 003205 213 -----KVDDTLSQKMAVSPNGNFVACFTH---D----GRLVVNNTN 246 (839)
Q Consensus 213 -----~~~~~~i~~ia~Spng~~iA~~~~---~----g~i~i~ssd 246 (839)
......|..-..+++++.+++.+- + |.+.++|.+
T Consensus 142 FdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 187 (494)
T 1bpo_A 142 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (494)
T ss_dssp EECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST
T ss_pred eecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc
Confidence 234566888899999998887653 3 568888865
No 311
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=74.74 E-value=79 Score=32.32 Aligned_cols=176 Identities=8% Similarity=0.051 Sum_probs=82.3
Q ss_pred CCeEEEeecCCCeEEEEEeCCeEEEE--eCCCCccccCCCCCccccccCeEEEEEECCeEEEEecCCeEEEEe-cCCCce
Q 003205 88 GRLIGMSWSEDQTLICVVQDGTVYRY--NIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMA-DFATMK 164 (839)
Q Consensus 88 ~~I~~~~fs~de~Lv~v~~dGtv~l~--~~~G~~~~~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v~-~~~~~~ 164 (839)
.+|..++--. .+.+.+. ||.|+.| +..|++-. +. . ....|.++..-.+-.++++ ++++|.+= |-.+.
T Consensus 24 ~~i~~ia~G~-~h~~~l~-~G~v~~wG~n~~Gqlg~---p~--~-~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gq- 93 (282)
T 3qhy_B 24 SGVDAIAGGY-FHGLALK-GGKVLGWGANLNGQLTM---PA--A-TQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQ- 93 (282)
T ss_dssp SSCCEEEECS-SEEEEEE-TTEEEEEECCSSSTTSC---CG--G-GGSCCCEEEECSSEEEEEE-TTEEEEEECCTTST-
T ss_pred CCCcEEEeCC-CeEEEEE-CCEEEEEeCCCCCCCCC---Cc--c-CCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCC-
Confidence 3566665542 3444445 8888888 45565521 10 0 0334665555444445555 77777653 21111
Q ss_pred EEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCC--cc---cccCCCceEEEECCCCcEEEEeecCCe
Q 003205 165 VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDG--VQ---KVDDTLSQKMAVSPNGNFVACFTHDGR 239 (839)
Q Consensus 165 ~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~--~~---~~~~~~i~~ia~Spng~~iA~~~~~g~ 239 (839)
+..|.. .....-.|-. ....-+.+. +++||.|-.+. +. .....+|..|+...+ +.+..+ +|.
T Consensus 94 ---lg~P~~-~~~~v~~ia~-----G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~ 160 (282)
T 3qhy_B 94 ---TTVPAE-ARSGVDAIAA-----GAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGG 160 (282)
T ss_dssp ---TCCCGG-GSSSEEEEEE-----ETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTE
T ss_pred ---CCCCcc-cCCCeEEEEC-----cCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCE
Confidence 110000 0011111111 233444555 88888885542 22 223345666666544 444455 788
Q ss_pred EEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecCEEEEEcCCC
Q 003205 240 LVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQA 288 (839)
Q Consensus 240 i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~~l~lig~~~ 288 (839)
++.|-.+..-.+. ........+.++ -||.+..++.-+..++.-|...
T Consensus 161 v~~wG~n~~gqlg-~p~~~~~~v~~i-~~G~~hs~al~~G~v~~wG~n~ 207 (282)
T 3qhy_B 161 VIAWGDNYFGQTT-VPAEAQSGVDDV-AGGIFHSLALKDGKVIAWGDNR 207 (282)
T ss_dssp EEEEECCTTSTTS-CCGGGGSSEEEE-EECSSEEEEEETTEEEEEECCT
T ss_pred EEEecCCCCCCCC-CceecCCCeEEE-EecCCEEEEEECCeEEEEECCC
Confidence 8888654222221 111111122333 4776655555334777777543
No 312
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=73.64 E-value=24 Score=36.13 Aligned_cols=102 Identities=5% Similarity=0.007 Sum_probs=55.6
Q ss_pred eEEEECCCCcEEEEeec--CCeEEEEecCCCCccccccCCCCCCCCceeeecCceEEEEecC-EEEE-------------
Q 003205 220 QKMAVSPNGNFVACFTH--DGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWND-MLVM------------- 283 (839)
Q Consensus 220 ~~ia~Spng~~iA~~~~--~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~vv~~~~~-~l~l------------- 283 (839)
..+++||+|.+..+-+. ++.|.+++..-++.+.++.......+..+.+-|+.--++.|.+ .+.+
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~ 103 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFT 103 (266)
T ss_dssp EEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEE
T ss_pred ccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEE
Confidence 67888887644333222 4567777777666666655432222334455443333333322 2222
Q ss_pred Ec-CCCCceEeccCCCeEEeecCCc-eEEEccCcceeeeccc
Q 003205 284 VA-PQAEPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVP 323 (839)
Q Consensus 284 ig-~~~~~v~f~~~~~~~l~~E~DG-vRIit~~~~~~l~~Vp 323 (839)
+| |.+.. ..+|+..+++++-++ |.+|.....+.+.+|+
T Consensus 104 ~g~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~ 143 (266)
T 2iwa_A 104 HQMKDGWG--LATDGKILYGSDGTSILYEIDPHTFKLIKKHN 143 (266)
T ss_dssp CCSSSCCE--EEECSSSEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred CCCCCeEE--EEECCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence 23 33322 334666555555555 8888888888888876
No 313
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=73.54 E-value=1e+02 Score=33.01 Aligned_cols=149 Identities=13% Similarity=0.152 Sum_probs=78.4
Q ss_pred CeEEEeecCCCeEEEEEeCCeEEEE--eCCCCc-cc----cCCCCCcccc-ccCeEEEEEE--CCeEEEEecCCeEEEEe
Q 003205 89 RLIGMSWSEDQTLICVVQDGTVYRY--NIHAEL-IE----PNASMGKECF-EENVVECVFW--GNGVVCVTEANRYFCMA 158 (839)
Q Consensus 89 ~I~~~~fs~de~Lv~v~~dGtv~l~--~~~G~~-~~----~~~g~~~~~~-~~~V~~~~~~--~~G~v~~t~~~~~~~v~ 158 (839)
+|+.+.-. ..+.+.+.+||+|+.| +-.|++ .- ...+..++.+ ...+..+.+. .+-.++++.++++|.+=
T Consensus 54 ~i~~i~~G-~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG 132 (389)
T 3kci_A 54 RPVQLIGG-EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWG 132 (389)
T ss_dssp CEEEEEEE-TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEE
T ss_pred ceEEEEeC-CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEe
Confidence 56666543 4567889999999999 445554 10 0000000100 1223334443 25567788889988762
Q ss_pred -cCCCc----------eEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCC--cc-------------
Q 003205 159 -DFATM----------KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDG--VQ------------- 212 (839)
Q Consensus 159 -~~~~~----------~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~--~~------------- 212 (839)
|-.+. .+..+.. + .....-.| +.....-+.+..+|.||.|-.+. +.
T Consensus 133 ~n~~GqLG~g~~~~~~~p~~v~~--l-~~~~i~~v-----a~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~ 204 (389)
T 3kci_A 133 EAEDGKLGHGNRSPCDRPRVIES--L-RGIEVVDV-----AAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKL 204 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGG--G-TTSCEEEE-----EECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEE
T ss_pred CCCCCcCCCCCCccCcCCeEecc--c-CCCeEEEE-----EeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceE
Confidence 21110 1111111 0 00010011 11334445666789999996542 11
Q ss_pred --cccCCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 213 --KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 213 --~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
.....+|..|+......+.+..+.+|++|.|-.+
T Consensus 205 v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n 240 (389)
T 3kci_A 205 VEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDG 240 (389)
T ss_dssp CGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECC
T ss_pred ecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCC
Confidence 1223457777776644677778899999999654
No 314
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=73.39 E-value=1.1e+02 Score=33.14 Aligned_cols=150 Identities=9% Similarity=0.031 Sum_probs=82.2
Q ss_pred CCeEEEeecCCCeEEEEEeCCeEEEE--eCCCCccc---c-------------CCCCCccc------cccCeEEEEEECC
Q 003205 88 GRLIGMSWSEDQTLICVVQDGTVYRY--NIHAELIE---P-------------NASMGKEC------FEENVVECVFWGN 143 (839)
Q Consensus 88 ~~I~~~~fs~de~Lv~v~~dGtv~l~--~~~G~~~~---~-------------~~g~~~~~------~~~~V~~~~~~~~ 143 (839)
.+|+.++-- ..+.+++++||.|+.| +-.|++-. . ..+..++. ....|.++.--.+
T Consensus 164 ~~i~~ia~G-~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~ 242 (413)
T 1a12_A 164 VPVVKVASG-NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAY 242 (413)
T ss_dssp SCEEEEEEC-SSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETT
T ss_pred CCEEEEEec-CceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCC
Confidence 578777765 4577899999999999 45666511 0 11100100 0245777766667
Q ss_pred eEEEEecCCeEEEEe-cCCCc----------eEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCc-
Q 003205 144 GVVCVTEANRYFCMA-DFATM----------KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGV- 211 (839)
Q Consensus 144 G~v~~t~~~~~~~v~-~~~~~----------~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~- 211 (839)
-.++++.++++|.+= |-.+. .+..+.. +......+.-+.. ....-+.+..+|.||.|-....
T Consensus 243 hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~--l~~~~~~v~~ia~----G~~hs~al~~~G~v~~wG~n~~G 316 (413)
T 1a12_A 243 FTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTS--FKNSTKSWVGFSG----GQHHTVCMDSEGKAYSLGRAEYG 316 (413)
T ss_dssp EEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGG--GCCTTCCEEEEEE----CSSEEEEEETTSCEEEEECCGGG
T ss_pred EEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchh--ccCCCceEEEEec----ccceEEEEeCCCCEEEeeCCCCC
Confidence 788889999988763 21111 1111111 1000000111111 2234455667899999965421
Q ss_pred -c-------------c-ccCCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 212 -Q-------------K-VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 212 -~-------------~-~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
. . .....|..|+... .+.+..+.+|.++.|-.+
T Consensus 317 qLG~g~~~~~~~~P~~v~~l~~v~~v~~G~--~hs~alt~~G~v~~wG~n 364 (413)
T 1a12_A 317 RLGLGEGAEEKSIPTLISRLPAVSSVACGA--SVGYAVTKDGRVFAWGMG 364 (413)
T ss_dssp TTCSCTTCCCEEEEEECCSSSSEEEEEECS--SEEEEEETTSCEEEEECC
T ss_pred ccCCCCCCccccCCEEecccCceeEEEECc--ceEEEEeCCCCEEEecCC
Confidence 1 0 0112566666654 467777889999999754
No 315
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=73.27 E-value=1.1e+02 Score=33.11 Aligned_cols=148 Identities=9% Similarity=0.080 Sum_probs=79.7
Q ss_pred CCeEEEeecCCCeEEEEEeCCeEEEE--eCCCCc-cccC----CCCCcccc-ccCeEEEEEECCeEEEEecCC-eEEEEe
Q 003205 88 GRLIGMSWSEDQTLICVVQDGTVYRY--NIHAEL-IEPN----ASMGKECF-EENVVECVFWGNGVVCVTEAN-RYFCMA 158 (839)
Q Consensus 88 ~~I~~~~fs~de~Lv~v~~dGtv~l~--~~~G~~-~~~~----~g~~~~~~-~~~V~~~~~~~~G~v~~t~~~-~~~~v~ 158 (839)
.+|+.++-- ..+.+.+.+||+|+.| +-.|++ .-.. .+..+..+ ...|.++..-.+-.++++.++ ++|.+=
T Consensus 16 ~~v~~ia~G-~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 16 RKVLIISAG-ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp CCEEEEEEC-SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred cceEEEecC-CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEc
Confidence 677777765 4567888999999999 456665 1100 00000001 235766665556666677765 777652
Q ss_pred -cCCCc----------eEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecC--Ccc-------------
Q 003205 159 -DFATM----------KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED--GVQ------------- 212 (839)
Q Consensus 159 -~~~~~----------~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~--~~~------------- 212 (839)
|..+. .+.++.. + .....-.| +......+.+..+|.||.|-.+ |+.
T Consensus 95 ~n~~GqLG~g~~~~~~~p~~v~~--l-~~~~i~~i-----a~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~ 166 (406)
T 4d9s_A 95 WGDFGRLGHGNSSDLFTPLPIKA--L-HGIRIKQI-----ACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQK 166 (406)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGG--G-TTCCEEEE-----EECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEE
T ss_pred CCCCcCCCCCCCCccccceEecc--c-CCCCEEEE-----EEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceE
Confidence 21111 1111110 1 00011111 1133455666779999999654 221
Q ss_pred --cccCCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 213 --KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 213 --~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
.....+|..|+... .+.+..+.+|.++.|-.+
T Consensus 167 v~~~~~~~i~~va~G~--~hs~alt~~G~v~~wG~n 200 (406)
T 4d9s_A 167 IQAFEGIRIKMVAAGA--EHTAAVTEDGDLYGWGWG 200 (406)
T ss_dssp CGGGTTCCEEEEEECS--SEEEEEETTSCEEEEECC
T ss_pred ecccCCCcEEEEecCC--CeEEEEeCCCCEEEeeCC
Confidence 01223566666554 477778899999999654
No 316
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=72.03 E-value=1.2e+02 Score=33.36 Aligned_cols=66 Identities=11% Similarity=0.136 Sum_probs=42.3
Q ss_pred CeEEEeecCCCeEEEEEeCCeEEEE--eCCCCc-ccc--------CCCCCccccccCeEEEEEECCeEEEEecCCeEEEE
Q 003205 89 RLIGMSWSEDQTLICVVQDGTVYRY--NIHAEL-IEP--------NASMGKECFEENVVECVFWGNGVVCVTEANRYFCM 157 (839)
Q Consensus 89 ~I~~~~fs~de~Lv~v~~dGtv~l~--~~~G~~-~~~--------~~g~~~~~~~~~V~~~~~~~~G~v~~t~~~~~~~v 157 (839)
+|+.++-. ..+.+++++||.|+.| +-.|++ ... ..+.... ...|..+.--.+-.+++|.++++|.+
T Consensus 205 ~i~~va~G-~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~--~~~v~~Ia~G~~hs~alt~~G~v~~w 281 (473)
T 3of7_A 205 NIVQLAPG-KDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFG--LRHVKYIASGENHCFALTKDNKLVSW 281 (473)
T ss_dssp CEEEEEEC-SSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECS--CCSEEEEEECSSEEEEEETTSCEEEE
T ss_pred CEEEEEec-CCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecC--CcceEEEecCCCeEEEEecCCCEEEe
Confidence 47777765 5577888999999999 455655 110 1111000 13566666555777888899998876
No 317
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=70.95 E-value=1.7e+02 Score=34.43 Aligned_cols=172 Identities=13% Similarity=0.106 Sum_probs=92.8
Q ss_pred CceEEEEcCCCCceeEEEec-------C-CCCCeEEEeecCCCeEEEEEeCCeEEEEeCCCC-ccccCCCCCccccccCe
Q 003205 65 LRKLRIFNSAGVLISETVWK-------N-PGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAE-LIEPNASMGKECFEENV 135 (839)
Q Consensus 65 ~~~I~iy~~~G~ll~ti~~~-------~-~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~-~~~~~~g~~~~~~~~~V 135 (839)
++-|..|+.....+..+... . ....|.++...+++.|.+++.++-+.+|+.... +..+....... ...|
T Consensus 332 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~--~~~v 409 (781)
T 3v9f_A 332 GGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELL--SNSV 409 (781)
T ss_dssp SSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CC--CSBE
T ss_pred CCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCC--Ccce
Confidence 45577777776666655321 1 124699999999999999997666888886543 33321111101 3456
Q ss_pred EEEEEECCeEEE-EecCCeEEEEecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc--
Q 003205 136 VECVFWGNGVVC-VTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-- 212 (839)
Q Consensus 136 ~~~~~~~~G~v~-~t~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-- 212 (839)
.++..-++|.+. .|..+-++.++. .+.....+...++ .....+++.. |.+-.+.++..+.++.++..+..
T Consensus 410 ~~i~~d~~g~lWigt~~~Gl~~~~~-~~~~~~~~~~~~~-~~~~v~~i~~-----d~~g~lwigt~~Gl~~~~~~~~~~~ 482 (781)
T 3v9f_A 410 LCSLKDSEGNLWFGTYLGNISYYNT-RLKKFQIIELEKN-ELLDVRVFYE-----DKNKKIWIGTHAGVFVIDLASKKVI 482 (781)
T ss_dssp EEEEECTTSCEEEEETTEEEEEECS-SSCEEEECCSTTT-CCCCEEEEEE-----CTTSEEEEEETTEEEEEESSSSSCC
T ss_pred EEEEECCCCCEEEEeccCCEEEEcC-CCCcEEEeccCCC-CCCeEEEEEE-----CCCCCEEEEECCceEEEeCCCCeEE
Confidence 665555455544 444455666543 2234444432112 1223344432 22223555556889999876533
Q ss_pred ---ccc-----CCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 213 ---KVD-----DTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 213 ---~~~-----~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
... ...|..|...++|.+-+ ++..+-|..++.+
T Consensus 483 ~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~ 523 (781)
T 3v9f_A 483 HHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPD 523 (781)
T ss_dssp EEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTT
T ss_pred ecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCC
Confidence 111 35678888888886543 3432235556544
No 318
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=70.58 E-value=16 Score=41.32 Aligned_cols=86 Identities=10% Similarity=0.026 Sum_probs=58.5
Q ss_pred CChHHHHHHHHHHHHhCCChhHHHHhhcc---C---CCCCCchHHHHHHHhcCCHHHHHHhhccCC------CH---HHH
Q 003205 719 VSEKRWYWLKVFALATKRDWDALERFSKE---K---RPPIGYRPFVEACVDADEKGEALKYIPKLV------DP---RER 783 (839)
Q Consensus 719 vsdkr~~~~kl~ala~~~~w~~L~~f~~~---K---KspIgyepfv~~~~~~~~~~ea~~yI~~i~------d~---~~r 783 (839)
.|+..-|-..|+++++.+++++-..+..+ + -..+-|-..+..|.+.|..++|.+....|. |. .--
T Consensus 102 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~L 181 (501)
T 4g26_A 102 VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAAL 181 (501)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 45777777888888888888777666642 1 134567778888888888888877666542 22 555
Q ss_pred HHHHHHcCCHHHHHHHHHhcC
Q 003205 784 AEAYARIGMAKEAADAASQAK 804 (839)
Q Consensus 784 ~~~~~~~~~~~~A~~~a~~~k 804 (839)
+..|.+.|++++|.++..+.+
T Consensus 182 i~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHH
Confidence 667777777777776655443
No 319
>3i4r_B Nuclear pore complex protein NUP133; protein transport, structural protein, kinetochore, mRNA transport, nucleus, phosphoprotein, translocation; 3.53A {Homo sapiens}
Probab=65.85 E-value=20 Score=41.62 Aligned_cols=240 Identities=15% Similarity=0.133 Sum_probs=121.1
Q ss_pred cCCCCCCchhhhhccCchHHHHHHHHHcCCchHHHHHHHHHHhhCChhHHHHHHhcChhHHHHHHHHHHhc---------
Q 003205 528 HEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCY--------- 598 (839)
Q Consensus 528 ~E~~~~~qV~lLl~~~~~~~AL~~Ai~S~D~dLI~~vll~l~~~l~~~~f~~~l~~~p~a~~~~~~y~~~~--------- 598 (839)
++.+-...+..|+++|.++.|+.-|=+-+|.+....++-....+-....++.-....+=|..+|..|.+.+
T Consensus 327 y~~~R~~~i~~L~~~g~~e~A~~LAEky~Df~sLv~l~e~~~~~~rl~~Y~~kfg~~~FA~~lf~~yi~~g~~~~LL~~~ 406 (644)
T 3i4r_B 327 YLQKRSDLLSPLLSLGQYLWAASLAEKYCDFDILVQMCEQTDNQSRLQRYMTQFADQNFSDFLFRWYLEKGKRGKLLSQP 406 (644)
T ss_dssp HHHTTTTTSTTHHHHSCTTTHHHHHHHTSCCHHHHHHHHHHSSCTTHHHHHHHSCSSCHHHHTHHHHCC-----------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHhCCHHHHHHHHHccchHHHHHHHHHHhCcCChHHHHHHHHHHCCChhHHhcCc
Confidence 33445678889999999999999999999999777766544443334455554432355666666665422
Q ss_pred --CHHHHHHHHH-----------hcCChhHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHhh-hhhcccc-ch-
Q 003205 599 --KHEFLKDFFL-----------STGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEKAHSL-FSETKEH-TF- 662 (839)
Q Consensus 599 --~~~~L~~~~~-----------~~~~~~e~a~~~l~~~~~~~~~~~~~~~~~~~~~k~~~L~~a~~~-~~~~~~~-~f- 662 (839)
....|..|+. ..++|..+|...+..+.++.+.- ..|...|.-|+=. .+...+. ..
T Consensus 407 ~~~~~~L~~FL~~~p~LsWI~di~~~~y~~Aa~tL~~lA~~E~~~~---------~kkk~~LSLaKLa~LAs~~~~~~~~ 477 (644)
T 3i4r_B 407 ISQHGQLANFLQAHEHLSWLHEINSQELEKAHATLLGLANMETRYF---------AKKKTLLGLSKLAALASDFSEDMLQ 477 (644)
T ss_dssp --CGGGTHHHHHTCSSSHHHHHHHTTCHHHHHHHHHHHHHHCCSCH---------HHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred chhhHHHHHHHhcCCCchHHHHHHhCCHHHHHHHHHHHHhcchhHH---------HHHHHHHHHHHHHHHhcCCCcchHH
Confidence 2233444443 36778888888888887655322 0334444333311 1111111 12
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhh----cccccc--CCCHHHHHHHHHHcCCc-chHHhHHhHcCCC------h---HHHH
Q 003205 663 -ESKAAEEHAKLLRIQHELEVST----KQAIFV--DSSISDTIRTCIVLGNH-RAAMKVKTEFKVS------E---KRWY 725 (839)
Q Consensus 663 -~~~~~~~~~~Ll~~Q~~Le~~~----~~~~f~--~~Sl~~ti~~l~~~~~~-k~a~~l~k~fkvs------d---kr~~ 725 (839)
.-+.++...+++++|..|-... +..... -+|+.+.|..|+...+. -.-..+++-|++- + +++.
T Consensus 478 ~~l~~i~~~L~li~~Qe~L~~~l~~~~~~~~~~~~~Ls~~eLI~l~t~~~n~~a~~~~F~~AL~ll~~~~~~~~~~~~~L 557 (644)
T 3i4r_B 478 EKIEEMAEQERFLLHQETLPEQLLAEKQLNLSAMPVLTAPQLIGLYICEENRRANEYDFKKALDLLEYIDEEEDININDL 557 (644)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTHHHHTTCCSSSSCCCCHHHHHHHSSSTTCTTCCHHHHHTTTTTTSSCC----CCHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhcCCCccccHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 2356889999999999986543 211111 26778888887753322 1223444444432 1 2322
Q ss_pred HHHH-HHHHhCCChhHHHHhhccCCCCCCch---HHHHHHHhcCCH-HHHHHhhccCCCH
Q 003205 726 WLKV-FALATKRDWDALERFSKEKRPPIGYR---PFVEACVDADEK-GEALKYIPKLVDP 780 (839)
Q Consensus 726 ~~kl-~ala~~~~w~~L~~f~~~KKspIgye---pfv~~~~~~~~~-~ea~~yI~~i~d~ 780 (839)
..+| +..+..-+|+.++. +..|+-.. .|++.|-..=.+ .+...|+|-+.+.
T Consensus 558 ~~~IW~r~i~~DdW~~~~~----~d~~~~~~~~t~~~k~l~~~~~~~~~~~~~lP~~~~~ 613 (644)
T 3i4r_B 558 KLEILCKALQRDNWSSSDG----KDDPIEVSKDSIFVKILQKLLKDGIQLSEYLPEVKDL 613 (644)
T ss_dssp HHHHHHHHHHTTCC---------------CHHHHHHHHCC-------------CTTSCSH
T ss_pred HHHHHHHHHhhcchhhccC----CCCHHHHHhcCcHHHHHHHHHhcCccHHHhCcCHHHh
Confidence 2222 22223358988872 12233333 344444432222 4566888877654
No 320
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=64.10 E-value=2.2e+02 Score=33.32 Aligned_cols=171 Identities=12% Similarity=0.092 Sum_probs=89.7
Q ss_pred ceEEEEcCCCCceeEEEec-CCCCCeEEEeecCCCeEEEEEeCCeEEEEeCC-CCccccCCCCCccccccCeEEEEEECC
Q 003205 66 RKLRIFNSAGVLISETVWK-NPGGRLIGMSWSEDQTLICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWGN 143 (839)
Q Consensus 66 ~~I~iy~~~G~ll~ti~~~-~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~-G~~~~~~~g~~~~~~~~~V~~~~~~~~ 143 (839)
+-|..|+.....+..+... .....|.++...+++.|.+++.+| +.+|+.. |++..+............|.++..-++
T Consensus 427 ~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~ 505 (781)
T 3v9f_A 427 GNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTHAG-VFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSE 505 (781)
T ss_dssp EEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEETTE-EEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTT
T ss_pred CCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEECCc-eEEEeCCCCeEEecccCcccccccceeEEEEEcCC
Confidence 4566666654444444321 112579999999999998888866 6678764 455333211100001245666655556
Q ss_pred eEEEEec-CCeEEEEecCCCceEEEcCCC-CCCCCCceEEEeCCCCCCCCcEEEEEEeCCeE-EEEecCCcc--------
Q 003205 144 GVVCVTE-ANRYFCMADFATMKVCELARP-EVEELPHCVAVIEPKYTMTGSVEVLIGTDAGI-LMLDEDGVQ-------- 212 (839)
Q Consensus 144 G~v~~t~-~~~~~~v~~~~~~~~~~l~~~-~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv-~l~~~~~~~-------- 212 (839)
|.+.+.. .+-++.++. .......+... ++ ......++.. .++|. +.++..+.+ +.++..+..
T Consensus 506 g~lWigt~~~Gl~~~~~-~~~~~~~~~~~~~l-~~~~i~~i~~---d~~g~--lWi~T~~Glv~~~d~~~~~~~~~~~~~ 578 (781)
T 3v9f_A 506 GRFWIGTFGGGVGIYTP-DMQLVRKFNQYEGF-CSNTINQIYR---SSKGQ--MWLATGEGLVCFPSARNFDYQVFQRKE 578 (781)
T ss_dssp CCEEEEESSSCEEEECT-TCCEEEEECTTTTC-SCSCEEEEEE---CTTSC--EEEEETTEEEEESCTTTCCCEEECGGG
T ss_pred CCEEEEEcCCCEEEEeC-CCCeEEEccCCCCC-CCCeeEEEEE---CCCCC--EEEEECCCceEEECCCCCcEEEccccC
Confidence 6555444 345666543 22334444321 12 1222334422 12444 445555667 888876432
Q ss_pred cccCCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 213 KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 213 ~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
......|.+|...++|.+-+ .+.+| |..++.+
T Consensus 579 gl~~~~i~~i~~d~~g~lW~-~t~~G-l~~~~~~ 610 (781)
T 3v9f_A 579 GLPNTHIRAISEDKNGNIWA-STNTG-ISCYITS 610 (781)
T ss_dssp TCSCCCCCEEEECSSSCEEE-ECSSC-EEEEETT
T ss_pred CCCCceEEEEEECCCCCEEE-EcCCc-eEEEECC
Confidence 23345678888888885433 35555 4445544
No 321
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=63.83 E-value=69 Score=40.01 Aligned_cols=39 Identities=15% Similarity=0.019 Sum_probs=31.6
Q ss_pred ceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCC
Q 003205 219 SQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCE 257 (839)
Q Consensus 219 i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~ 257 (839)
+..++.+++..++-+++.|++++||+..-++++.+.|..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 456677788889999999999999998767777776643
No 322
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=61.13 E-value=11 Score=34.68 Aligned_cols=79 Identities=8% Similarity=0.130 Sum_probs=45.3
Q ss_pred CceEEEEcCCCCceeEEEecCCCCCeEEEeecCC---CeEEEEEeCCeEEEE----eCCCCccccCCCCCccccccCeEE
Q 003205 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSED---QTLICVVQDGTVYRY----NIHAELIEPNASMGKECFEENVVE 137 (839)
Q Consensus 65 ~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~d---e~Lv~v~~dGtv~l~----~~~G~~~~~~~g~~~~~~~~~V~~ 137 (839)
.-+|.|+|.+|+++.++.+.....-...|.|... |.. ..+|++.+- +..|+......-. ...|..
T Consensus 40 ~v~v~I~d~~G~~V~t~~~~~~~aG~~~~~WDg~d~~G~~---~~~G~Y~~~v~a~d~~g~~~~~~~~~-----~~~V~~ 111 (138)
T 3c12_A 40 FVNFEITDANGTFVKQLSVPASAAGEVSFAWDGTDANGNR---MAAGKYGITATQTDTAGAKSKLATYV-----DAPVDS 111 (138)
T ss_dssp EEEEEEECSSCCEEEEEEEEESSSEEEEEEECSBCTTSCB---CCSEEEEEEEEEEETTCCEEEECEEE-----EEEEEE
T ss_pred EEEEEEEeCCCCEEEEEEcCCcCCceEEEEECCcCCCCCC---CCCceEEEEEEEEECCCCEEEEeeeE-----EEEEEE
Confidence 5679999999999999986331234788999742 221 124544322 2455542211101 345777
Q ss_pred EEEECCeEEEEecC
Q 003205 138 CVFWGNGVVCVTEA 151 (839)
Q Consensus 138 ~~~~~~G~v~~t~~ 151 (839)
+.+-++|..+....
T Consensus 112 V~~~~g~~~L~l~~ 125 (138)
T 3c12_A 112 VTIGSDGLYLNLTG 125 (138)
T ss_dssp EEEETTEEEEEETT
T ss_pred EEecCCeEEEEECC
Confidence 77766665544444
No 323
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=60.87 E-value=1.5e+02 Score=30.20 Aligned_cols=196 Identities=12% Similarity=0.055 Sum_probs=107.6
Q ss_pred CceEEEEcC--CCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEE--eCCCCccccCCCCCccccccCeEEEEE
Q 003205 65 LRKLRIFNS--AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRY--NIHAELIEPNASMGKECFEENVVECVF 140 (839)
Q Consensus 65 ~~~I~iy~~--~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~--~~~G~~~~~~~g~~~~~~~~~V~~~~~ 140 (839)
++.+..|-. .|++= ++-.. ..+|+.++-.. .+.+.+. ||.|+.| +..|++-. +. + ....|.++..
T Consensus 41 ~G~v~~wG~n~~Gqlg--~p~~~-~~~i~~ia~G~-~hs~~l~-~G~v~~wG~n~~Gqlg~---P~--~-~~~~v~~ia~ 109 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLT--MPAAT-QSGVDAIAAGN-YHSLALK-DGEVIAWGGNEDGQTTV---PA--E-ARSGVDAIAA 109 (282)
T ss_dssp TTEEEEEECCSSSTTS--CCGGG-GSCCCEEEECS-SEEEEEE-TTEEEEEECCTTSTTCC---CG--G-GSSSEEEEEE
T ss_pred CCEEEEEeCCCCCCCC--CCccC-CCCEEEEEeCC-CEEEEEE-CCEEEEeeCCCCCCCCC---Cc--c-cCCCeEEEEC
Confidence 466777653 34431 12111 25677777763 3444444 9999999 45666521 11 1 1346887777
Q ss_pred ECCeEEEEecCCeEEEEe-cCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCC--cc---cc
Q 003205 141 WGNGVVCVTEANRYFCMA-DFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDG--VQ---KV 214 (839)
Q Consensus 141 ~~~G~v~~t~~~~~~~v~-~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~--~~---~~ 214 (839)
-.+-.+++| ++++|.+= |..+. ++.+.. .....-.| .. ....-+.+. |+.||.|-... +. ..
T Consensus 110 G~~hs~al~-~G~v~~wG~n~~gq----lg~~~~-~~~~i~~i-~~----G~~~~~~l~-~G~v~~wG~n~~gqlg~p~~ 177 (282)
T 3qhy_B 110 GAWASYALK-DGKVIAWGDDSDGQ----TTVPAE-AQSGVTAL-DG----GVYTALAVK-NGGVIAWGDNYFGQTTVPAE 177 (282)
T ss_dssp ETTEEEEEE-TTEEEEEECCTTST----TSCCGG-GGSSEEEE-EE----CSSEEEEEE-TTEEEEEECCTTSTTSCCGG
T ss_pred cCCEEEEEe-CCeEEEecCCCCCc----CCCCcc-CCCCeEEE-Ec----ccCEEEEEE-CCEEEEecCCCCCCCCCcee
Confidence 778888889 99998763 22221 211100 11111112 11 233344455 89999996653 22 22
Q ss_pred cCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCCCCCceeeecCce-EEEEecCEEEEEcCCCC
Q 003205 215 DDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDS-VLLYWNDMLVMVAPQAE 289 (839)
Q Consensus 215 ~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~~p~~~~WcG~d~-vv~~~~~~l~lig~~~~ 289 (839)
...+|..|+...+. .+|+ .+|.++.|-.+-.-.+ .........+.++ -||.+. +++. +..++.-|.+..
T Consensus 178 ~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gql-g~p~~~~~~v~~i-~~G~~h~~al~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 178 AQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQT-TVPTEALSGVSAI-ASGEWYSLALK-NGKVIAWGSSRT 247 (282)
T ss_dssp GGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTT-CCCGGGGSSCCEE-EECSSCEEEEE-TTEEEEESTTCC
T ss_pred cCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCC-CCCcccCCCceEE-EcCCCEEEEEE-CCEEEEecCCCC
Confidence 24568888887663 4555 6999999976522222 1111111234455 487654 4556 778998887653
No 324
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=60.82 E-value=1.5e+02 Score=31.10 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=22.6
Q ss_pred eEEEeecCCCeEEEEEeC--------------CeEEEEeCCCCc
Q 003205 90 LIGMSWSEDQTLICVVQD--------------GTVYRYNIHAEL 119 (839)
Q Consensus 90 I~~~~fs~de~Lv~v~~d--------------Gtv~l~~~~G~~ 119 (839)
.-.|.|.|||.|.+...| |+|..++..|+.
T Consensus 132 ~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 132 GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 457899999998666544 578888888863
No 325
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=58.90 E-value=2e+02 Score=33.34 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=15.3
Q ss_pred ceEEEECCCCcEEEEeecCCe
Q 003205 219 SQKMAVSPNGNFVACFTHDGR 239 (839)
Q Consensus 219 i~~ia~Spng~~iA~~~~~g~ 239 (839)
+..++++|++..+.+.+.++.
T Consensus 232 w~~~a~d~~~~~vy~~~~~g~ 252 (668)
T 1kv9_A 232 WDSMAYDPELDLLYVGTGNGS 252 (668)
T ss_dssp CSCEEEETTTTEEEEECCCEE
T ss_pred ccceEEcCCCCEEEEeCCCCC
Confidence 446788888878877776664
No 326
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=58.77 E-value=8.4 Score=43.57 Aligned_cols=86 Identities=14% Similarity=0.236 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHcCCcchHHhHHhH---cCC-ChHHHHHHHHHHHHhCCChhHHHHhhcc---C---CCCCCchHHHHHHH
Q 003205 693 SISDTIRTCIVLGNHRAAMKVKTE---FKV-SEKRWYWLKVFALATKRDWDALERFSKE---K---RPPIGYRPFVEACV 762 (839)
Q Consensus 693 Sl~~ti~~l~~~~~~k~a~~l~k~---fkv-sdkr~~~~kl~ala~~~~w~~L~~f~~~---K---KspIgyepfv~~~~ 762 (839)
+.+..|..|.+.|+.+.|.++-++ .++ |+..-|-..|.++++.|++++-.++... + -...-|...+++|.
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 457778888889998888777543 333 5777888999999999999988777643 1 23455778999999
Q ss_pred hcCCHHHHHHhhccCC
Q 003205 763 DADEKGEALKYIPKLV 778 (839)
Q Consensus 763 ~~~~~~ea~~yI~~i~ 778 (839)
+.|+.++|..++.+|.
T Consensus 187 ~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 187 DTKNADKVYKTLQRLR 202 (501)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHH
Confidence 9999999999988874
No 327
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=58.05 E-value=3.5e+02 Score=33.65 Aligned_cols=75 Identities=12% Similarity=0.018 Sum_probs=46.3
Q ss_pred cEEEEEEeCCeEEEEecCCcc------cccCCCceEEEECCC------CcEEEEeec-CCeEEEEecCCCCccccccCCC
Q 003205 192 SVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPN------GNFVACFTH-DGRLVVNNTNFSSPVIDESCES 258 (839)
Q Consensus 192 ~~~v~~s~d~tv~l~~~~~~~------~~~~~~i~~ia~Spn------g~~iA~~~~-~g~i~i~ssd~~~~l~e~~~~~ 258 (839)
..++++ .++.++.+..+... ..-.+.|..++++|- ++++|.+.. |+++.|++-+--+.+.......
T Consensus 524 ~~vvva-~g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~ 602 (1158)
T 3ei3_A 524 SQVVVA-VGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG 602 (1158)
T ss_dssp SEEEEE-ETTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS
T ss_pred CEEEEE-ECCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC
Confidence 345555 47777776554211 223457899999874 369999996 9999999966334443333433
Q ss_pred CCCCCceee
Q 003205 259 ALPPEQIAW 267 (839)
Q Consensus 259 ~~~p~~~~W 267 (839)
...|.++.-
T Consensus 603 ~~~p~si~l 611 (1158)
T 3ei3_A 603 EIIPRSILM 611 (1158)
T ss_dssp SCCEEEEEE
T ss_pred CCCCcEEEE
Confidence 345665543
No 328
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=57.53 E-value=2.1e+02 Score=30.79 Aligned_cols=69 Identities=17% Similarity=0.266 Sum_probs=43.2
Q ss_pred CCeEEEeecCCCeEEEEEeCCeEEEEe----CCCCccccCC---CCCccc-cccCeEEEEEECCeEEEEecCCeEEEE
Q 003205 88 GRLIGMSWSEDQTLICVVQDGTVYRYN----IHAELIEPNA---SMGKEC-FEENVVECVFWGNGVVCVTEANRYFCM 157 (839)
Q Consensus 88 ~~I~~~~fs~de~Lv~v~~dGtv~l~~----~~G~~~~~~~---g~~~~~-~~~~V~~~~~~~~G~v~~t~~~~~~~v 157 (839)
++|+.++-. ..+.+++++||.|+.|- -.|++-.... ....+. ....|.++..-.+-.+++|.++++|.+
T Consensus 127 ~~i~~va~G-~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~w 203 (423)
T 3mvd_K 127 GKALCISAG-DSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTV 203 (423)
T ss_dssp SCEEEEEEC-SSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEE
T ss_pred CCEEEEEcC-cCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEe
Confidence 578877765 46678889999999994 2444310000 000000 134577776666778889999998876
No 329
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=56.50 E-value=63 Score=37.07 Aligned_cols=262 Identities=10% Similarity=-0.019 Sum_probs=134.5
Q ss_pred CCceEEEEc-CCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCC----eEEEEeCCCCccccCCCCCccccccCeEEE
Q 003205 64 ALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDG----TVYRYNIHAELIEPNASMGKECFEENVVEC 138 (839)
Q Consensus 64 ~~~~I~iy~-~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dG----tv~l~~~~G~~~~~~~g~~~~~~~~~V~~~ 138 (839)
..+.++||- ++|.+|..|+-.. +..-.+.||| +|..-+. ..| |-......|.. .+..|. ..- ..+
T Consensus 23 ~~g~~~v~g~ps~r~~~~i~vf~-~~~~~g~g~~-~es~~~l-~~~~~~~~~~~~~~~g~~-~~~~gd-----~hh-~~~ 92 (595)
T 1fwx_A 23 QSGEMRILGIPSMRELMRVPVFN-RCSATGWGQT-NESVRIH-ERTMSERTKKFLAANGKR-IHDNGD-----LHH-VHM 92 (595)
T ss_dssp TTCEEEEEEETTCCEEEEEESSS-CCTTTCTTTB-HHHHHHH-HTTCCHHHHHHHHHTTCS-SCCCCC-----BCC-EEE
T ss_pred cCceEEEEecCCcceEEEeeeec-CCCCcccCCc-hhHHHHH-hccCCccchhhhhccCce-ecccCC-----CCc-ccc
Confidence 357788888 8999999998876 3666777777 3322111 222 11101112210 011111 001 123
Q ss_pred EEEC---CeEE-EEec--CCeEEEEecCCCceEEEcCCCCCCCCCceEEEeC-CCCCCCCcEEEEEE-------------
Q 003205 139 VFWG---NGVV-CVTE--ANRYFCMADFATMKVCELARPEVEELPHCVAVIE-PKYTMTGSVEVLIG------------- 198 (839)
Q Consensus 139 ~~~~---~G~v-~~t~--~~~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~-~~~S~~~~~~v~~s------------- 198 (839)
.+.+ +|-. +++. +.++..++ ....+...+-+.+.+..|+...+.. | ++..+...+
T Consensus 93 s~t~g~~DG~~lfVnd~~~~rVavId-l~t~~~~~ii~ip~g~~phg~~~~~~p----~~~~v~~~~~~~~p~~~dg~~l 167 (595)
T 1fwx_A 93 SFTEGKYDGRFLFMNDKANTRVARVR-CDVMKCDAILEIPNAKGIHGLRPQKWP----RSNYVFCNGEDETPLVNDGTNM 167 (595)
T ss_dssp EEETTEEEEEEEEEEETTTTEEEEEE-TTTTEEEEEEECSSCCSEEEEEECCSS----BCSEEEEEECSCEESSCSSSST
T ss_pred CCCCCCcCCCEEEEEcCCCCEEEEEE-CCCceEeeEEeCCCCCCCcceeeeecC----CCcEEEEecccccccCCCCccc
Confidence 3321 4443 3333 23455554 3333322222333335577666544 4 777765553
Q ss_pred -----eCCeEEEEecCCcc-----cccCCCceEEEECCCCcEEEEeecCC------------------------------
Q 003205 199 -----TDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDG------------------------------ 238 (839)
Q Consensus 199 -----~d~tv~l~~~~~~~-----~~~~~~i~~ia~Spng~~iA~~~~~g------------------------------ 238 (839)
.++++-++|.+... .... .-..+++||+|+++...+.+.
T Consensus 168 ~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~ 246 (595)
T 1fwx_A 168 EDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 246 (595)
T ss_dssp TCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred ccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence 24577778877654 2222 447899999999877766442
Q ss_pred --------eEEEEecCC--CCc-cccccCCCCCCCCceeee-----------cCceEEE-EecCE-------------E-
Q 003205 239 --------RLVVNNTNF--SSP-VIDESCESALPPEQIAWC-----------GMDSVLL-YWNDM-------------L- 281 (839)
Q Consensus 239 --------~i~i~ssd~--~~~-l~e~~~~~~~~p~~~~Wc-----------G~d~vv~-~~~~~-------------l- 281 (839)
.+.|++..- .+. +...... ..|..+... ++|.|.+ -+... +
T Consensus 247 ~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~ 324 (595)
T 1fwx_A 247 AGDYQELNGVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV 324 (595)
T ss_dssp HTCSEEETTEEEEECSGGGCCSSEEEEEEE--SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred CCCeeEECcEEEEeCcccCCceeEEEEecC--CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceE
Confidence 244444332 122 2222211 134444443 3344332 22211 1
Q ss_pred --EEEcCCCCceEeccCCCeEEeecCCc-eEEEccCc----------ceeeeccchhhH-----hhhccCCCChhhhHHH
Q 003205 282 --VMVAPQAEPVQYFYDEPLVLIPECDG-VRILSNSS----------MEFLQRVPASTE-----QIFAIGSTSPAALLYD 343 (839)
Q Consensus 282 --~lig~~~~~v~f~~~~~~~l~~E~DG-vRIit~~~----------~~~l~~Vp~~~~-----~vf~igS~~pga~L~~ 343 (839)
.-+|.....+.|..++..+++.|+|+ |-+|+-+. .+.++++|-+.+ .-..+.-+++|..|+.
T Consensus 325 ~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~ 404 (595)
T 1fwx_A 325 AEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVC 404 (595)
T ss_dssp ECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEE
T ss_pred EEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEE
Confidence 13344445788999897789999998 88898776 678888877542 1123334455655543
No 330
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=54.71 E-value=2.2e+02 Score=30.22 Aligned_cols=46 Identities=13% Similarity=0.236 Sum_probs=28.9
Q ss_pred CeEEEEecCCcc--cccCCCceEEEECCCCcEEEEee-cCCeEEEEecC
Q 003205 201 AGILMLDEDGVQ--KVDDTLSQKMAVSPNGNFVACFT-HDGRLVVNNTN 246 (839)
Q Consensus 201 ~tv~l~~~~~~~--~~~~~~i~~ia~Spng~~iA~~~-~~g~i~i~ssd 246 (839)
+.||.++..... .....--+.|++||||+.+-... ..++|+.+.-+
T Consensus 203 g~vyr~d~~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 203 SFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp EEEEEECTTCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred cEEEEEECCeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 467777664332 11122347899999998765543 45678888754
No 331
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=54.23 E-value=2.1e+02 Score=32.74 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=33.6
Q ss_pred CceEEEEcC--CCCceeEEEecCCCCC---------eEEEeecC-CCe----EEEEEeCCeEEEEeC-CCCc
Q 003205 65 LRKLRIFNS--AGVLISETVWKNPGGR---------LIGMSWSE-DQT----LICVVQDGTVYRYNI-HAEL 119 (839)
Q Consensus 65 ~~~I~iy~~--~G~ll~ti~~~~~~~~---------I~~~~fs~-de~----Lv~v~~dGtv~l~~~-~G~~ 119 (839)
++.|.-++. +|+++++......... -..+..+| ++. +++.+.||.+.-+|. .|+.
T Consensus 72 ~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 72 PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 567778886 8999988765431000 01233332 445 667777887777774 6776
No 332
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=53.45 E-value=2.1e+02 Score=29.59 Aligned_cols=230 Identities=13% Similarity=0.103 Sum_probs=114.9
Q ss_pred CCceeEEEecCCCCCeEEEeecC-CCeEEEEEeCCeEEEEeC----------CCCccccCCCCCccccccCeEEEEEE--
Q 003205 75 GVLISETVWKNPGGRLIGMSWSE-DQTLICVVQDGTVYRYNI----------HAELIEPNASMGKECFEENVVECVFW-- 141 (839)
Q Consensus 75 G~ll~ti~~~~~~~~I~~~~fs~-de~Lv~v~~dGtv~l~~~----------~G~~~~~~~g~~~~~~~~~V~~~~~~-- 141 (839)
|.-+..+.... .+.+..+.-+. .++++++++.|.++-+.. .|......+.-. + .+.|..+..-
T Consensus 30 ~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~--~e~i~~~~~~~~ 105 (307)
T 1zi0_A 30 GKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-Q--DERITAILPVTE 105 (307)
T ss_dssp -------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-T--TCCEEEEEEESC
T ss_pred CCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-C--CCEEEEEEEecc
Confidence 33444454444 25666555554 556899999998776632 132211112111 1 4457665442
Q ss_pred --CC-eEEEEecCCeEEEEe--cCCCce--EEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc--
Q 003205 142 --GN-GVVCVTEANRYFCMA--DFATMK--VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-- 212 (839)
Q Consensus 142 --~~-G~v~~t~~~~~~~v~--~~~~~~--~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-- 212 (839)
++ -++++|.+|.+..+. .+...+ .... ..+......-.+.. ..+.+.+++++.+|.++.+......
T Consensus 106 ~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~--i~l~~~d~lv~~~~---~~~~~~i~l~T~~G~~irf~~~~v~~~ 180 (307)
T 1zi0_A 106 FEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVA--IKLVDGDELIGVDL---TSGEDEVMLFSAEGKVVRFKESSVRAM 180 (307)
T ss_dssp CCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEES--SCCCTTCCEEEEEE---ECTTCEEEEEETTSEEEEEEGGGSCBC
T ss_pred CCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEE--EEECCCCEEEEEEE---eCCCCEEEEECCCCcEEEEEHHHcCcc
Confidence 23 367788888776553 332211 1111 11211122112211 1134567777778888777765322
Q ss_pred ----------c-ccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCCC--CCCceeee-cCceEEEEe-
Q 003205 213 ----------K-VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESAL--PPEQIAWC-GMDSVLLYW- 277 (839)
Q Consensus 213 ----------~-~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~--~p~~~~Wc-G~d~vv~~~- 277 (839)
. .....+..+..-+++..+.++|..|..+-... .+|...... ...-+... ++|.++..+
T Consensus 181 gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~------~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~ 254 (307)
T 1zi0_A 181 GCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAV------AEYPTKSRATKGVISIKVTERNGLVVGAVQ 254 (307)
T ss_dssp CTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECG------GGSCCCCTTSCCEESSCCCTTTCSEEEEEE
T ss_pred CCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEH------HHhccCCCCCCCEEeeEecCCCCeEEEEEE
Confidence 1 12345666666566667888888888766542 234322110 00111111 345555544
Q ss_pred ---cCEEEEEcCCCCceEeccCCCeEEeecCCceEEEccCcceee
Q 003205 278 ---NDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFL 319 (839)
Q Consensus 278 ---~~~l~lig~~~~~v~f~~~~~~~l~~E~DGvRIit~~~~~~l 319 (839)
++++.++...|..++|..+.....-----|++++..+..+-+
T Consensus 255 v~~~~~l~~~t~~g~~ir~~~~~i~~~~R~~~Gv~~i~l~~~~~v 299 (307)
T 1zi0_A 255 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENV 299 (307)
T ss_dssp ECTTCEEEEEESSCCEEEEEGGGSCBCCSSCCCEECSCCCTTCCE
T ss_pred eCCCceEEEEcCCCcEEEEecccccccCcCCCCeEeEEcCCCCEE
Confidence 357889999998888877654443333447888877654443
No 333
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=53.31 E-value=2.2e+02 Score=29.76 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=46.6
Q ss_pred CCCCceeE-EEecCCCCCeEEEeecC----CCeEEEEEeCCeEEEEeCCCCccc---------cCCCCCccccccCeEEE
Q 003205 73 SAGVLISE-TVWKNPGGRLIGMSWSE----DQTLICVVQDGTVYRYNIHAELIE---------PNASMGKECFEENVVEC 138 (839)
Q Consensus 73 ~~G~ll~t-i~~~~~~~~I~~~~fs~----de~Lv~v~~dGtv~l~~~~G~~~~---------~~~g~~~~~~~~~V~~~ 138 (839)
..|.++.. ++... ...|+++.-.+ +..+++++.+|.++.-++. +|.. ..+.. .+.+..+
T Consensus 77 a~G~~i~~~i~L~~-~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~-e~~~~~r~~G~~ai~l~e-----~d~lv~~ 149 (323)
T 1wp5_A 77 DLGQHIANIIPIDR-DEEIIKAIPINDFELNGYFLFVTRNGMVKKTELK-HYKAQRYSKPLTGINLKN-----DDQVVDV 149 (323)
T ss_dssp SCCEEGGGTSCCCT-TCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGG-GGCCSCCSSCEECSCCCT-----TCCEEEE
T ss_pred CCCcChhhccCCCC-CCEEEEEEEecccCCCceEEEEeCCCeEEEeEHH-HhhhccccCceEEEEeCC-----CCEEEEE
Confidence 45654444 34443 24688764333 3458999999999988643 2211 11111 3456666
Q ss_pred EEEC--CeEEEEecCCeEEEEe
Q 003205 139 VFWG--NGVVCVTEANRYFCMA 158 (839)
Q Consensus 139 ~~~~--~G~v~~t~~~~~~~v~ 158 (839)
...+ +-++++|.++..+.+.
T Consensus 150 ~~~~~~~~i~l~T~~G~~irf~ 171 (323)
T 1wp5_A 150 HLTDGMNELFLVTHNGYALWFD 171 (323)
T ss_dssp EEECSCSEEEEEETTSEEEEEE
T ss_pred EEeCCCCEEEEEeCCCcEEEEE
Confidence 6654 5588888899876654
No 334
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=53.02 E-value=2.3e+02 Score=30.06 Aligned_cols=136 Identities=8% Similarity=0.108 Sum_probs=74.9
Q ss_pred CceEEEE--cCCCCceeEEEe-----cCCCCCeEEEee--cCC-Ce--EEEEEeCCeEEEEeC----CC----Cc-cccC
Q 003205 65 LRKLRIF--NSAGVLISETVW-----KNPGGRLIGMSW--SED-QT--LICVVQDGTVYRYNI----HA----EL-IEPN 123 (839)
Q Consensus 65 ~~~I~iy--~~~G~ll~ti~~-----~~~~~~I~~~~f--s~d-e~--Lv~v~~dGtv~l~~~----~G----~~-~~~~ 123 (839)
.++|++| ++....+..+.. ......+.+++. +|. +. +++...+|.+..|.+ .| +. .++.
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 6899999 545556777732 121145677777 774 53 568888999999854 23 22 3444
Q ss_pred CCCCccccccCeEEEEEEC-CeEEEEecCC-eEEEEecC-CC---ceE-EEcCCCCCCCCCceEEEeCCCCCCCCcEEEE
Q 003205 124 ASMGKECFEENVVECVFWG-NGVVCVTEAN-RYFCMADF-AT---MKV-CELARPEVEELPHCVAVIEPKYTMTGSVEVL 196 (839)
Q Consensus 124 ~g~~~~~~~~~V~~~~~~~-~G~v~~t~~~-~~~~v~~~-~~---~~~-~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~ 196 (839)
++. .+-.|.+-+ +|.+++.... .+|.+.-- +. +.. ..+....+...++..++.+. ++|+--++
T Consensus 178 lgs-------q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~---~~g~gyLi 247 (355)
T 3amr_A 178 MNS-------QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYA---ADGKGYLM 247 (355)
T ss_dssp CSS-------CEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEEC---GGGCEEEE
T ss_pred CCC-------CcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEec---CCCCEEEE
Confidence 543 244555554 7877777543 47777621 11 111 22222223235677766422 25553334
Q ss_pred EEe--CCeEEEEecCC
Q 003205 197 IGT--DAGILMLDEDG 210 (839)
Q Consensus 197 ~s~--d~tv~l~~~~~ 210 (839)
++. ++++.+++..+
T Consensus 248 vSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 248 ASSQGNSSYAIYDRQG 263 (355)
T ss_dssp EEEGGGTEEEEEESST
T ss_pred EEcCCCCEEEEEECCC
Confidence 443 66777777753
No 335
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=51.47 E-value=37 Score=38.39 Aligned_cols=159 Identities=11% Similarity=0.090 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhhCChhHHHHHHhcChhHHHHHHHHHHhcC------HHHHHHHHHhcCChhHHHHH
Q 003205 546 DTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYK------HEFLKDFFLSTGQLQEVAFL 619 (839)
Q Consensus 546 ~~AL~~Ai~S~D~dLI~~vll~l~~~l~~~~f~~~l~~~p~a~~~~~~y~~~~~------~~~L~~~~~~~~~~~e~a~~ 619 (839)
+.|+..|..|.|.-.=+.+-=.|..+--.+. +|. +-.+.+..|+++.. .++|-.||.+.++|.++|.+
T Consensus 166 ~~~~~~~l~s~DelFH~~LYdWli~~gl~d~---LL~---i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~V 239 (525)
T 3i5p_A 166 QKSYEAALKYNDRLFHYHMYDWLVSQNREEK---LLD---IETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEI 239 (525)
T ss_dssp STTHHHHSSSCCHHHHHHHHHHHHHTTCGGG---GGG---CCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCcch---hhc---CCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHH
Confidence 4578888888887554444333444321222 231 22336677886532 48888999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHhhhhhc--c----ccchHHHHHHHHHHHHHHHHHHHhhhccc-cccCC
Q 003205 620 LWKESWELGKNPMASNGSALHGPRIKRIEKAHSLFSET--K----EHTFESKAAEEHAKLLRIQHELEVSTKQA-IFVDS 692 (839)
Q Consensus 620 ~l~~~~~~~~~~~~~~~~~~~~~k~~~L~~a~~~~~~~--~----~~~f~~~~~~~~~~Ll~~Q~~Le~~~~~~-~f~~~ 692 (839)
...-|.+..+++ ..+|++.|..|....+.. + ...-....+++.++.-..|..+-...... +....
T Consensus 240 L~~LA~s~~~i~--------L~~RIeyLsrA~~~a~~~~~~~~~~~~~~l~~~i~e~ldVA~IQ~~il~~l~~~~r~~~e 311 (525)
T 3i5p_A 240 LYRLATSNFDIT--------LFERIEFLSRANGFCNSVSPLSQKQRIVQLASRIQDACEVAGIQGDILSLVYTDARIDSA 311 (525)
T ss_dssp HHHHHSSSSCCC--------HHHHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHHHHHHHHHCSSSCHH
T ss_pred HHHHHhCCCCCC--------HHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccChH
Confidence 998887643332 338999999998643221 1 11123456778888888888876554321 11111
Q ss_pred CHHHHHHHHHHcCCcchHHhHHhHcCCC
Q 003205 693 SISDTIRTCIVLGNHRAAMKVKTEFKVS 720 (839)
Q Consensus 693 Sl~~ti~~l~~~~~~k~a~~l~k~fkvs 720 (839)
...+.+..| .|..-....|-.+|-.|
T Consensus 312 ~~~~ai~~L--~~~Ll~is~Lyn~yA~p 337 (525)
T 3i5p_A 312 IKDELIKTL--DGKILSTSELFNDFAVP 337 (525)
T ss_dssp HHHHHHHHH--HHCCCCHHHHHHTTTTT
T ss_pred HHHHHHHHh--cccCcCHHHHHHHHHhh
Confidence 123344444 45566677776666544
No 336
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=51.21 E-value=1.9e+02 Score=28.60 Aligned_cols=103 Identities=14% Similarity=0.112 Sum_probs=64.1
Q ss_pred HHHcCCcchHHhHHhH-cCCC--hHHHHHHHHHHHHhCCChhHHHHhhcc-----C---------CCCCCchHHHHHHHh
Q 003205 701 CIVLGNHRAAMKVKTE-FKVS--EKRWYWLKVFALATKRDWDALERFSKE-----K---------RPPIGYRPFVEACVD 763 (839)
Q Consensus 701 l~~~~~~k~a~~l~k~-fkvs--dkr~~~~kl~ala~~~~w~~L~~f~~~-----K---------KspIgyepfv~~~~~ 763 (839)
+...|+.+.|.+.-++ .++. +...+......+...++|++-..+... + ..+..|.-...++..
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 3445555554443222 2332 335677777788888998876655521 1 112233446677788
Q ss_pred cCCHHHHHHhhccC----CC----HHHHHHHHHHcCCHHHHHHHHHhc
Q 003205 764 ADEKGEALKYIPKL----VD----PRERAEAYARIGMAKEAADAASQA 803 (839)
Q Consensus 764 ~~~~~ea~~yI~~i----~d----~~~r~~~~~~~~~~~~A~~~a~~~ 803 (839)
.|+.++|..++.+. ++ ......+|.+.|++.+|++...+.
T Consensus 249 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 89999988777653 21 156778888889999888776654
No 337
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=49.99 E-value=2.2e+02 Score=28.76 Aligned_cols=51 Identities=14% Similarity=0.086 Sum_probs=30.6
Q ss_pred HHHHHHhCcHHHHHHHHhc--CCCCCCch-------hhhhccCchHHHHHHHHHcCCchH
Q 003205 510 AAHADKSGRRKLAAMLVEH--EPRSSKQV-------PLLLSIGEEDTALVKATESGDTDL 560 (839)
Q Consensus 510 A~~A~~~gR~~LA~~Ll~~--E~~~~~qV-------~lLl~~~~~~~AL~~Ai~S~D~dL 560 (839)
++.++-.|..+-|+..++. +.++..++ ..++.+|+++.|+..--....+++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~ 65 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPEL 65 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhH
Confidence 4677888888888887653 22232222 356677888888864433333333
No 338
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=49.69 E-value=3.4e+02 Score=31.00 Aligned_cols=109 Identities=12% Similarity=0.104 Sum_probs=54.4
Q ss_pred CCEEEEcC-CCCeEEEEecCchhhhhhc-ccCCceEEEEcCCCCceeE---EEecCCCCCeEEEeecCCCeEEEEEe--C
Q 003205 35 RNKVACAP-FGGPIAVIRDDSKIVQLYA-ESALRKLRIFNSAGVLISE---TVWKNPGGRLIGMSWSEDQTLICVVQ--D 107 (839)
Q Consensus 35 ~~~va~sp-~Gg~IA~~~d~~k~~~~~~-~~~~~~I~iy~~~G~ll~t---i~~~~~~~~I~~~~fs~de~Lv~v~~--d 107 (839)
...+++.| +|..+++.+..... +.. ......+.+||..-..... .+-.. ...-.+..+..+++++++.. +
T Consensus 188 ~~~~av~~~~g~l~v~GG~~~~~--~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~-~~~~~~~~~~~~g~lyv~GG~~~ 264 (656)
T 1k3i_A 188 PAAAAIEPTSGRVLMWSSYRNDA--FGGSPGGITLTSSWDPSTGIVSDRTVTVTKH-DMFCPGISMDGNGQIVVTGGNDA 264 (656)
T ss_dssp CSEEEEETTTTEEEEEEECCCTT--TCSCCCSEEEEEEECTTTCCBCCCEEEECSC-CCSSCEEEECTTSCEEEECSSST
T ss_pred ceeEEEEecCCEEEEEecccccc--cccCCCCeEEEEEEeCCCCcEEeCcccCCCC-CCccccccCCCCCCEEEeCCCCC
Confidence 34667777 66666665432110 000 0012368999976543332 32211 12334567888999865543 4
Q ss_pred CeEEEEeCC-CCcccc-CCCCCccccccCeEEEEEECCeEEEEecC
Q 003205 108 GTVYRYNIH-AELIEP-NASMGKECFEENVVECVFWGNGVVCVTEA 151 (839)
Q Consensus 108 Gtv~l~~~~-G~~~~~-~~g~~~~~~~~~V~~~~~~~~G~v~~t~~ 151 (839)
+++.+||+. ++..+. .+.. ...=..+.+.++|.+++.+.
T Consensus 265 ~~v~~yd~~t~~W~~~~~~~~-----~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 265 KKTSLYDSSSDSWIPGPDMQV-----ARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp TCEEEEEGGGTEEEECCCCSS-----CCSSCEEEECTTSCEEEECC
T ss_pred CceEEecCcCCceeECCCCCc-----cccccceEEecCCeEEEEeC
Confidence 579999864 333322 1111 11112345555776666654
No 339
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=49.58 E-value=2.2e+02 Score=28.85 Aligned_cols=213 Identities=11% Similarity=0.084 Sum_probs=109.3
Q ss_pred CCeEEEeecC-CCeEEEEEeCCeEEEEeC----CCCccccCCCCCccccccCeEEEEEE--C-CeEEEEecCCeEEEEe-
Q 003205 88 GRLIGMSWSE-DQTLICVVQDGTVYRYNI----HAELIEPNASMGKECFEENVVECVFW--G-NGVVCVTEANRYFCMA- 158 (839)
Q Consensus 88 ~~I~~~~fs~-de~Lv~v~~dGtv~l~~~----~G~~~~~~~g~~~~~~~~~V~~~~~~--~-~G~v~~t~~~~~~~v~- 158 (839)
+.+..+.-.. .+.|++.+++|.++.-.. .+.-... +.. .+.|..+-.- + .-++++|.+|-+..+.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~l-l~~-----~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l 97 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSL-KSR-----EEKIVGAFIREKFGNRLLLATKKGYVKKIPL 97 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCC-SST-----TCCEEEEEEGGGSCSEEEEEETTSEEEEEEG
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCccccc-CCC-----CCEEEEEECCcCCCCEEEEEeCCCEEEEEEH
Confidence 5666655444 456889999998774332 1211112 322 4567665331 1 3466777777765554
Q ss_pred -cCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc------------c-ccCCCceEEEE
Q 003205 159 -DFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------------K-VDDTLSQKMAV 224 (839)
Q Consensus 159 -~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~------------~-~~~~~i~~ia~ 224 (839)
++. ++-.-.....+......-.+... .+.+.+++++..|.++.+...... . .....+..+..
T Consensus 98 ~~~~-~~~~G~~~i~lkegD~l~~~~~~---~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~ 173 (276)
T 3no0_A 98 AEFE-YKAQGMPIIKLTEGDEVVSIASS---VDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRI 173 (276)
T ss_dssp GGTT-TCSTTEECSCCCTTCCEEEEEEC---CSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEE
T ss_pred HHhh-hhcCCeEEEecCCCCEEEEEEEe---CCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEE
Confidence 332 11000001112112222222111 145678888889988888765332 0 12244555555
Q ss_pred CCCCcEEEEeecCCeEEEEecCCCCccccccCCCCC--CCCceeeecCceEEEEe----cCEEEEEcCCCCceE--eccC
Q 003205 225 SPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESAL--PPEQIAWCGMDSVLLYW----NDMLVMVAPQAEPVQ--YFYD 296 (839)
Q Consensus 225 Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~~--~p~~~~WcG~d~vv~~~----~~~l~lig~~~~~v~--f~~~ 296 (839)
.++++.+.+.|.+|..+....+ +|...... ....+ -.+|.++..+ ++++.++...|..+. |..+
T Consensus 174 ~~~~~~ll~~T~~G~~kr~~~~------e~~~~~R~gkGv~~i--~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 174 WNGEPYLLVITAKGRVKKISHE------EIPKTNRGVKGTEVS--GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp ESSCSEEEEEETTSCEEEEEGG------GSCCCCTTCCCEECC--CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred eCCCCEEEEEeCCCcEEEeEHH------HcccCCCCCcceEEE--cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 5556688888888887766532 33221110 01111 2334444332 247888888888888 8765
Q ss_pred CCeEEeecCCceEEEccCcceee
Q 003205 297 EPLVLIPECDGVRILSNSSMEFL 319 (839)
Q Consensus 297 ~~~~l~~E~DGvRIit~~~~~~l 319 (839)
.....-----|+|++.... +.+
T Consensus 246 ~i~~~~R~~~Gv~~i~l~~-d~v 267 (276)
T 3no0_A 246 DIPLSTKKSIPRTRWKLED-DEI 267 (276)
T ss_dssp GSCBCCTTSCCC-CCCCTT-CCE
T ss_pred HCCCcCCCCCCEEeEEcCC-CEE
Confidence 5444433334788877765 443
No 340
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=47.74 E-value=4.5e+02 Score=31.84 Aligned_cols=143 Identities=12% Similarity=0.016 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccCC---C-HHHHHHHHHHcCCcchHHhHHhHcCCChHHHHHHHHHHHHhCCCh
Q 003205 663 ESKAAEEHAKLLRIQHELEVSTKQAIFVDS---S-ISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDW 738 (839)
Q Consensus 663 ~~~~~~~~~~Ll~~Q~~Le~~~~~~~f~~~---S-l~~ti~~l~~~~~~k~a~~l~k~fkvsdkr~~~~kl~ala~~~~w 738 (839)
-++++++++++-.-+..-+.......-++. + +.+.+.+|+++|..++|-- =+.+.++.
T Consensus 113 is~cid~y~~~~~~~~~~~~~~~~~~~id~rL~~Lv~~iv~~cl~hnae~~Avd------------------LalE~erL 174 (963)
T 4ady_A 113 VSKSIEMYVQEASKQYTKDEQFYTKDIIDPKLTSIFERMIEKCLKASELKLALG------------------IALEGYRL 174 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGSSCSCHHHHHHHHHHHHHHHHHTCHHHHHH------------------HHHHTTCH
T ss_pred HHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHhCCCHHHHHH------------------HHHHHhhH
Confidence 456777777665444322111000001111 1 3667778889888777644 46788999
Q ss_pred hHHHHhhcc--CCCC-CCchHHHHHHHhcCCHHHHHHhhccCCCHH--------HHHHHHHHcC--CHHHHHHHHHhcCC
Q 003205 739 DALERFSKE--KRPP-IGYRPFVEACVDADEKGEALKYIPKLVDPR--------ERAEAYARIG--MAKEAADAASQAKD 805 (839)
Q Consensus 739 ~~L~~f~~~--KKsp-Igyepfv~~~~~~~~~~ea~~yI~~i~d~~--------~r~~~~~~~~--~~~~A~~~a~~~kd 805 (839)
|.|+++..+ +-.. =.|...+.+|+. ...|+ ..++ --+++|.+.+ +|-.|.++|.+..|
T Consensus 175 D~Le~~vd~~~~~~~~~n~~rvclYlls------~v~~l---v~p~~fr~~vLr~l~~Iy~k~~~~dy~~a~~~ai~LnD 245 (963)
T 4ady_A 175 DIIESALKSKLDQDSTSENVKIINYLLT------LAITT---VTNSKFRSSILRKSFDFLMNMPNCDYLTLNKVVVNLND 245 (963)
T ss_dssp HHHHHHHHHHCCC-CHHHHHHHHHHHHH------HHHHT---CCCHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHH------Hhhcc---CCChHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHcCC
Confidence 999988863 1010 122233333321 12222 2222 2467788888 99999999999999
Q ss_pred HHHHHHHHHHh--cCChhHHHHHHHHHHH
Q 003205 806 GELLGRLKLTF--AQNAAASSIFDTLRDR 832 (839)
Q Consensus 806 ~~~L~~i~~~~--~~~~~~~~~i~~~~~~ 832 (839)
.+...++..++ ..+..+.-+|.-++.+
T Consensus 246 ~~li~~if~~l~~~~d~l~ayQiAFdL~~ 274 (963)
T 4ady_A 246 AGLALQLFKKLKEENDEGLSAQIAFDLVS 274 (963)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 99999999986 3455555555555543
No 341
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=46.87 E-value=1.8e+02 Score=35.49 Aligned_cols=39 Identities=15% Similarity=0.006 Sum_probs=32.2
Q ss_pred CceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccC
Q 003205 218 LSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESC 256 (839)
Q Consensus 218 ~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~ 256 (839)
.+..++.+++..++-+++.|++++||+..-++++.+.|.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 366778888888999999999999999776777766664
No 342
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=46.85 E-value=56 Score=27.23 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhCCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C-CH---HHHHHHHH
Q 003205 722 KRWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V-DP---RERAEAYA 788 (839)
Q Consensus 722 kr~~~~kl~ala~~~~w~~L~~f~~~-----KKspIgyepfv~~~~~~~~~~ea~~yI~~i----~-d~---~~r~~~~~ 788 (839)
...|......+...++|++-..+... ...+..+.-....+...|+.++|..++.++ + +. .....+|.
T Consensus 35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 114 (136)
T 2fo7_A 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 114 (136)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34455556666777777665554421 222333444556667777777776665543 1 11 23445555
Q ss_pred HcCCHHHHHHH
Q 003205 789 RIGMAKEAADA 799 (839)
Q Consensus 789 ~~~~~~~A~~~ 799 (839)
+.|++.+|.+.
T Consensus 115 ~~~~~~~A~~~ 125 (136)
T 2fo7_A 115 KQGDYDEAIEY 125 (136)
T ss_dssp TTTCHHHHHHH
T ss_pred HHccHHHHHHH
Confidence 66666666544
No 343
>1u89_A Talin 1, talin; 4-helix bundle, LEFT-handed, structural protein; NMR {Mus musculus} SCOP: a.216.1.1
Probab=45.84 E-value=45 Score=30.43 Aligned_cols=52 Identities=29% Similarity=0.338 Sum_probs=30.5
Q ss_pred HHHHHHHHhccChhhHHHHHHhhhhHHHHHH---HHHH-HccccCCHHHHHHHHHHh
Q 003205 341 LYDALDHFDRRSAKADENLRLIRASLPKAVE---ACID-AAGHEFDISRQRTLLRAA 393 (839)
Q Consensus 341 L~~A~~~~~~~~~~a~e~lr~i~~~L~~AV~---~CI~-AA~~e~d~~~Qk~LL~AA 393 (839)
.+.+.+.+-..-..+.|.+|.-|. |..|-. .||. .|..+-|++.|++||.||
T Consensus 55 Il~~t~~l~~s~gd~~eMvrqak~-Laqat~~LV~~iK~eAe~~~D~~~q~rLL~AA 110 (139)
T 1u89_A 55 ILTVTENIFSSMGDAGEMVRQARI-LAQATSDLVNAIKADAEGESDLENSRKLLSAA 110 (139)
T ss_dssp HHHHHHHHHHTTTTSHHHHHHHHH-HHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 344444333333344677766542 333322 2344 556678999999999998
No 344
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=45.38 E-value=2.3e+02 Score=27.81 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCChhHHHHhhcc-----CCC------CCCchHHHHHHHhcCCHHHHHHhhcc
Q 003205 724 WYWLKVFALATKRDWDALERFSKE-----KRP------PIGYRPFVEACVDADEKGEALKYIPK 776 (839)
Q Consensus 724 ~~~~kl~ala~~~~w~~L~~f~~~-----KKs------pIgyepfv~~~~~~~~~~ea~~yI~~ 776 (839)
.+......+...+++++-..+... .+. +..+.-...++...|+.++|..|+.+
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 455556667777777766555431 011 11222234455566666666655544
No 345
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=45.17 E-value=2e+02 Score=28.99 Aligned_cols=102 Identities=9% Similarity=-0.050 Sum_probs=59.3
Q ss_pred HHHcCCcchHHhHHhHcCCChHHHHHHHHHHHHhCCChhHHH----HhhccC---CCCCCchHHHHHHHhcCCHHHHHHh
Q 003205 701 CIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALE----RFSKEK---RPPIGYRPFVEACVDADEKGEALKY 773 (839)
Q Consensus 701 l~~~~~~k~a~~l~k~fkvsdkr~~~~kl~ala~~~~w~~L~----~f~~~K---KspIgyepfv~~~~~~~~~~ea~~y 773 (839)
.+..|+.+.|..--+.-.-|+-+..-.....+...+++++-. +.+... ..|..+-.-..++...|+.++|..+
T Consensus 44 yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~ 123 (291)
T 3mkr_A 44 YLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRT 123 (291)
T ss_dssp HHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 344566554443222213333333444445566677776543 333321 1222223344677889999999999
Q ss_pred hccCCCH---HHHHHHHHHcCCHHHHHHHHHh
Q 003205 774 IPKLVDP---RERAEAYARIGMAKEAADAASQ 802 (839)
Q Consensus 774 I~~i~d~---~~r~~~~~~~~~~~~A~~~a~~ 802 (839)
+.+-.++ -.+..+|.+.|.+.+|.+...+
T Consensus 124 l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 124 LHQGDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8883333 5677889999999999876544
No 346
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=45.16 E-value=3.2e+02 Score=29.42 Aligned_cols=141 Identities=13% Similarity=0.071 Sum_probs=69.5
Q ss_pred HHHHHHcCCcchHHhHHhHc-CC--ChHHHHHHHHHHHHhCCChhHHHHhhcc-----C-CC--CCCchH---HHHHHHh
Q 003205 698 IRTCIVLGNHRAAMKVKTEF-KV--SEKRWYWLKVFALATKRDWDALERFSKE-----K-RP--PIGYRP---FVEACVD 763 (839)
Q Consensus 698 i~~l~~~~~~k~a~~l~k~f-kv--sdkr~~~~kl~ala~~~~w~~L~~f~~~-----K-Ks--pIgyep---fv~~~~~ 763 (839)
-..+...|+.+.|...-++. +. .+...|...-..+...++|++-...... . .. ...... -..++..
T Consensus 351 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~ 430 (537)
T 3fp2_A 351 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR 430 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH
Confidence 33445667776655543221 22 2345677778889999999876655531 1 11 122211 1244555
Q ss_pred c----------CCHHHHHHhhccC----CC-H---HHHHHHHHHcCCHHHHHHHHHh---cC--CHHHHH--------HH
Q 003205 764 A----------DEKGEALKYIPKL----VD-P---RERAEAYARIGMAKEAADAASQ---AK--DGELLG--------RL 812 (839)
Q Consensus 764 ~----------~~~~ea~~yI~~i----~d-~---~~r~~~~~~~~~~~~A~~~a~~---~k--d~~~L~--------~i 812 (839)
. |+.++|..+..++ ++ . .....+|.+.|++.+|++...+ .. +.+.+. .+
T Consensus 431 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 510 (537)
T 3fp2_A 431 QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKI 510 (537)
T ss_dssp HHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHH
T ss_pred HhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHhHHHHHHH
Confidence 5 8888888777654 21 2 5677889999999999877543 21 122222 23
Q ss_pred HHHhcCChhHHHHHHHHHHHhhhcCC
Q 003205 813 KLTFAQNAAASSIFDTLRDRLSFQGV 838 (839)
Q Consensus 813 ~~~~~~~~~~~~~i~~~~~~~~~~~~ 838 (839)
+.+...++.....+..++..++++|+
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~r~~~~ 536 (537)
T 3fp2_A 511 QKRLRADPIISAKMELTLARYRAKGM 536 (537)
T ss_dssp HHHHHTC-------------------
T ss_pred HHhccccHHHHHHHhhHHHHHhhccC
Confidence 34445566677888888888888875
No 347
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=44.74 E-value=2.8e+02 Score=28.62 Aligned_cols=145 Identities=10% Similarity=0.238 Sum_probs=76.3
Q ss_pred CCCe-EEEEEeCCeEEEEeCCCCccccCC-CCC------ccccccCeEEEEEEC--CeEEEEecCCeEEEEecCCCceE-
Q 003205 97 EDQT-LICVVQDGTVYRYNIHAELIEPNA-SMG------KECFEENVVECVFWG--NGVVCVTEANRYFCMADFATMKV- 165 (839)
Q Consensus 97 ~de~-Lv~v~~dGtv~l~~~~G~~~~~~~-g~~------~~~~~~~V~~~~~~~--~G~v~~t~~~~~~~v~~~~~~~~- 165 (839)
++|. +++++.+|.|+..+++ ++..... +.. .+ .+.+..+.... +-++++|..|++|.+.-.+=|..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~-~~~~~~~~~~g~~~~~lke--~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~ 82 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQN-EYKLQGTGGKGLSSFDLND--GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSS 82 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGG-GSCBCCSSCCCEECCCCCT--TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC--
T ss_pred CCCCEEEEEeCCCEEEEeEHH-HhhccccCCCCceecccCC--CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCC
Confidence 4555 6899999999988543 2211000 000 11 44566554433 66888999999887764321111
Q ss_pred -----EEcCC-CCCCCCCceEEEeC-CCCCCCCcEEEEEEeCCeEEEEecCCcc----------c-ccCCCceEEEECCC
Q 003205 166 -----CELAR-PEVEELPHCVAVIE-PKYTMTGSVEVLIGTDAGILMLDEDGVQ----------K-VDDTLSQKMAVSPN 227 (839)
Q Consensus 166 -----~~l~~-~~~~~~~~~w~vi~-~~~S~~~~~~v~~s~d~tv~l~~~~~~~----------~-~~~~~i~~ia~Spn 227 (839)
..+.+ .++......-.+++ +.|+ +...+++++.+|.++......-. . ...+.+..+....+
T Consensus 83 r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~-~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~ 161 (312)
T 1suu_A 83 RASKGQNISELINLGDQEEILTIKNSKDLT-DDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFK 161 (312)
T ss_dssp -----CBGGGTSCCCTTCCEEEEEEESCCC-TTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECT
T ss_pred ccCCCcChhhccCCCCCCEEEEEEEeccCC-CCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCC
Confidence 11111 11211222222222 2232 34667888889988888765321 1 12344555544444
Q ss_pred CcEEEEeecCCeEEEEec
Q 003205 228 GNFVACFTHDGRLVVNNT 245 (839)
Q Consensus 228 g~~iA~~~~~g~i~i~ss 245 (839)
.+.|.+.|.+|.......
T Consensus 162 ~~~i~l~T~~G~~~r~~~ 179 (312)
T 1suu_A 162 DEKVICLSKKGSAFIFNS 179 (312)
T ss_dssp TCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEeCCCcEEEEEH
Confidence 567888888888766653
No 348
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=44.72 E-value=1.2e+02 Score=25.06 Aligned_cols=77 Identities=9% Similarity=-0.023 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhCCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----CC-H---HHHHHHHHHc
Q 003205 724 WYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----VD-P---RERAEAYARI 790 (839)
Q Consensus 724 ~~~~kl~ala~~~~w~~L~~f~~~-----KKspIgyepfv~~~~~~~~~~ea~~yI~~i----~d-~---~~r~~~~~~~ 790 (839)
.+...-..+...++|++-..+... ...+..+.-...++...|+.++|..+..++ ++ + -....+|.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHh
Confidence 445555566666666655444421 223333444556666777777776655542 21 1 4455677778
Q ss_pred CCHHHHHHHH
Q 003205 791 GMAKEAADAA 800 (839)
Q Consensus 791 ~~~~~A~~~a 800 (839)
|++.+|++..
T Consensus 94 ~~~~~A~~~~ 103 (131)
T 2vyi_A 94 NKHVEAVAYY 103 (131)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 8888877643
No 349
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=43.10 E-value=74 Score=25.84 Aligned_cols=78 Identities=15% Similarity=-0.027 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhCCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----CC-H---HHHHHHHHH
Q 003205 723 RWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----VD-P---RERAEAYAR 789 (839)
Q Consensus 723 r~~~~kl~ala~~~~w~~L~~f~~~-----KKspIgyepfv~~~~~~~~~~ea~~yI~~i----~d-~---~~r~~~~~~ 789 (839)
..++..-..+...++|++-..+... ...+-.+.-....+...|+.++|..+..++ ++ + .....+|.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3455555566667777665554431 122223333455666677777776655543 21 1 455677778
Q ss_pred cCCHHHHHHHH
Q 003205 790 IGMAKEAADAA 800 (839)
Q Consensus 790 ~~~~~~A~~~a 800 (839)
.|++.+|.+..
T Consensus 85 ~~~~~~A~~~~ 95 (118)
T 1elw_A 85 LNRFEEAKRTY 95 (118)
T ss_dssp TTCHHHHHHHH
T ss_pred HhhHHHHHHHH
Confidence 88888887654
No 350
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=42.48 E-value=3.9e+02 Score=29.54 Aligned_cols=173 Identities=10% Similarity=0.117 Sum_probs=95.9
Q ss_pred CceEEEEcCCC-CceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeCCCCc--cccCCCCC-ccccccCeEEEEE
Q 003205 65 LRKLRIFNSAG-VLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAEL--IEPNASMG-KECFEENVVECVF 140 (839)
Q Consensus 65 ~~~I~iy~~~G-~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~~G~~--~~~~~g~~-~~~~~~~V~~~~~ 140 (839)
..+++|||..- +.+.+...+ ..|+...|-.+..|..|+++. |+-|++.|+- .+.+-.|. -. ...|+.-+.
T Consensus 85 g~~lQiFnle~K~klks~~~~---e~VvfWkWis~~~l~lVT~ta-VyHWsi~~~s~P~kvFdR~~~L~--~~QIInY~~ 158 (494)
T 1bpo_A 85 GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWISLNTVALVTDNA-VYHWSMEGESQPVKMFDRHSSLA--GCQIINYRT 158 (494)
T ss_dssp TTEEEEEETTTTEEEEEEECS---SCCCEEEEEETTEEEEECSSE-EEEEESSSSCCCEEEEECCGGGT--TCEEEEEEE
T ss_pred CCeEEEEchHHhhhhcceecC---CCceEEEecCCCeEEEEcCCe-eEEecccCCCCchhheecchhcc--cceEEEEEE
Confidence 68999999755 366766654 579999999999999999887 6679998742 11111111 11 345666666
Q ss_pred ECCeEEEEe-----cCC------eEEEEecCCCceEEEcCCCCCCCCCceEEEeC-CCCCCCCcEEEEEEe---CCeEEE
Q 003205 141 WGNGVVCVT-----EAN------RYFCMADFATMKVCELARPEVEELPHCVAVIE-PKYTMTGSVEVLIGT---DAGILM 205 (839)
Q Consensus 141 ~~~G~v~~t-----~~~------~~~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~-~~~S~~~~~~v~~s~---d~tv~l 205 (839)
.+++.-++. .++ .+|.++. ...+.+. +...++.-+. +..+...++.+++.. ++.+.+
T Consensus 159 d~~~kW~~l~GI~~~~~~v~G~mQLYS~er---~~sQ~ie-----Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi 230 (494)
T 1bpo_A 159 DAKQKWLLLTGISAQQNRVVGAMQLYSVDR---KVSQPIE-----GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 230 (494)
T ss_dssp CTTSSEEEEEEEEEETTEEEEEEEEEESTT---CCEEEEC-----CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEE
T ss_pred CCCCCeEEEEeecccCCcccceEEEeeccc---cccchhe-----eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEE
Confidence 554443322 122 2333322 1122221 2222332221 111112223344433 356666
Q ss_pred EecCCc----c------------cc-cCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcc
Q 003205 206 LDEDGV----Q------------KV-DDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPV 251 (839)
Q Consensus 206 ~~~~~~----~------------~~-~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l 251 (839)
...... . .. ..+-=..|.+|+.+..|-+.|.-|.+++++...+..+
T Consensus 231 ~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp EECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred EEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee
Confidence 655321 1 00 0111248899999999999999999999976655554
No 351
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=42.33 E-value=92 Score=26.35 Aligned_cols=78 Identities=18% Similarity=0.083 Sum_probs=45.8
Q ss_pred HHHHHHHHHhCCChhHHHHhhc-----cCCCCCCchHHHHHHHhcCCHHHHHHhhccC----CC-H---HHHHHHHHHcC
Q 003205 725 YWLKVFALATKRDWDALERFSK-----EKRPPIGYRPFVEACVDADEKGEALKYIPKL----VD-P---RERAEAYARIG 791 (839)
Q Consensus 725 ~~~kl~ala~~~~w~~L~~f~~-----~KKspIgyepfv~~~~~~~~~~ea~~yI~~i----~d-~---~~r~~~~~~~~ 791 (839)
|..+-..+.+.++|++-..... ....+..|.-...++.+.|+.++|..+..+. ++ + -.+...|.+.|
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 3344455666667665544432 1233344444556667777777776655543 21 1 56777888899
Q ss_pred CHHHHHHHHHh
Q 003205 792 MAKEAADAASQ 802 (839)
Q Consensus 792 ~~~~A~~~a~~ 802 (839)
++.+|++...+
T Consensus 87 ~~~~A~~~~~~ 97 (126)
T 3upv_A 87 EYASALETLDA 97 (126)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99998866543
No 352
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=42.04 E-value=1.1e+02 Score=29.29 Aligned_cols=60 Identities=18% Similarity=0.071 Sum_probs=43.9
Q ss_pred HHHHHhcCCHHHHHHhhccCCCH---HHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHHhc
Q 003205 758 VEACVDADEKGEALKYIPKLVDP---RERAEAYARIGMAKEAADAASQAKDGELLGRLKLTFA 817 (839)
Q Consensus 758 v~~~~~~~~~~ea~~yI~~i~d~---~~r~~~~~~~~~~~~A~~~a~~~kd~~~L~~i~~~~~ 817 (839)
++..++.|+.+.|..+...+.+. .+=-+.++..|++.-|..+..+.||.+.|..++...+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg 74 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTG 74 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 45667778888777776666544 5556777888888888888888888888887776543
No 353
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=41.78 E-value=90 Score=33.08 Aligned_cols=28 Identities=4% Similarity=0.026 Sum_probs=17.2
Q ss_pred CCeEEEEe-cCCeEEEEecCCCceEEEcC
Q 003205 142 GNGVVCVT-EANRYFCMADFATMKVCELA 169 (839)
Q Consensus 142 ~~G~v~~t-~~~~~~~v~~~~~~~~~~l~ 169 (839)
.+|.+++- .+++++.++-..+...+.+.
T Consensus 110 ~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 110 EDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred cCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 46655444 45678887765566666664
No 354
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=41.55 E-value=36 Score=39.05 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=51.4
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCC-------------ceeEEEecCCCCCeEEEeecCCCe
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV-------------LISETVWKNPGGRLIGMSWSEDQT 100 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~-------------ll~ti~~~~~~~~I~~~~fs~de~ 100 (839)
+-..+.+||+|..+-+... ..++|.+|+.+-. .+.++.- ......+.|++||.
T Consensus 278 ~PhGv~~sPDGk~v~V~~~-----------~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v---G~gP~h~aF~~dG~ 343 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGK-----------LSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL---GLGPLHTAFDGRGN 343 (595)
T ss_dssp SCCCEEECTTSSEEEEECT-----------TSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC---CSCEEEEEECTTSE
T ss_pred CceEEEEcCCCCEEEEeCC-----------CCCeEEEEECcccccccccccCcccceEEEcCC---CCCcceEEECCCCe
Confidence 3457899999998887752 5789999997732 2333321 14689999999997
Q ss_pred E-EEEEeCCeEEEEeCC
Q 003205 101 L-ICVVQDGTVYRYNIH 116 (839)
Q Consensus 101 L-v~v~~dGtv~l~~~~ 116 (839)
+ ++..-|++|..||+.
T Consensus 344 aY~t~~ldsqV~kwdi~ 360 (595)
T 1fwx_A 344 AYTSLFLDSQVVKWNIE 360 (595)
T ss_dssp EEEEETTTTEEEEEEHH
T ss_pred EEEEEecCCcEEEEEhh
Confidence 5 688889999999865
No 355
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=40.30 E-value=3.6e+02 Score=28.52 Aligned_cols=158 Identities=14% Similarity=0.043 Sum_probs=77.7
Q ss_pred EEEEcCCCCeEEEEecCc-hhhhhhcccCCceEEEEcCCC--CceeEEEecC-----CCCCeEEEeecC--CCe--EEEE
Q 003205 37 KVACAPFGGPIAVIRDDS-KIVQLYAESALRKLRIFNSAG--VLISETVWKN-----PGGRLIGMSWSE--DQT--LICV 104 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~-k~~~~~~~~~~~~I~iy~~~G--~ll~ti~~~~-----~~~~I~~~~fs~--de~--Lv~v 104 (839)
-+++.|+|-.+....... .+-.+. ...++.|.+|+.+. .....+.... ...+..+|.+.+ ++. |+++
T Consensus 54 Di~~~~~G~~~~s~~~~~pg~~~~~-~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv 132 (355)
T 3sre_A 54 DLEILPNGLAFISSGLKYPGIMSFD-PDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 132 (355)
T ss_dssp EEEECTTSEEEEEECCC------------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred eeEEcCCCeEEEEeccccCCCcccC-CCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence 456788765544432100 000001 12588999999872 2233443322 114788888866 353 5444
Q ss_pred E-e--CCeEEEEe--CCCCccc---cCCCCCccccccCeEEEEEECCeEEEEecC-------------------CeEEEE
Q 003205 105 V-Q--DGTVYRYN--IHAELIE---PNASMGKECFEENVVECVFWGNGVVCVTEA-------------------NRYFCM 157 (839)
Q Consensus 105 ~-~--dGtv~l~~--~~G~~~~---~~~g~~~~~~~~~V~~~~~~~~G~v~~t~~-------------------~~~~~v 157 (839)
. . +++|.+|. ..|...+ ..-+.. -....++.+-++|-..+|.+ +.+|.+
T Consensus 133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~----~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKL----LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTT----CSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred ECCCCCCeEEEEEEECCCCEEEEEeccccCC----CCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 3 2 45677774 4444311 111210 23456777777776666643 233433
Q ss_pred ecCCCceEEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEe-CCeEEEEecC
Q 003205 158 ADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDED 209 (839)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~-d~tv~l~~~~ 209 (839)
+. .....+.+ ++ ..|.. ..+||||+++..+.. .+.|+.++.+
T Consensus 209 d~---~~~~~~~~-~l-~~pNG-----ia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 209 SP---NDVRVVAE-GF-DFANG-----INISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp CT---TCCEEEEE-EE-SSEEE-----EEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred EC---CeEEEeec-CC-cccCc-----ceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 32 01111110 00 11222 236779988877765 7888888875
No 356
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=39.07 E-value=1.5e+02 Score=23.97 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhCCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C-CH---HHHHHHHHHc
Q 003205 724 WYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V-DP---RERAEAYARI 790 (839)
Q Consensus 724 ~~~~kl~ala~~~~w~~L~~f~~~-----KKspIgyepfv~~~~~~~~~~ea~~yI~~i----~-d~---~~r~~~~~~~ 790 (839)
.|......+...++|++-..+... ...+..+.-....+...|+.++|..+..++ + ++ .....+|.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 344444555556666554433321 122223334455666677777766655543 1 11 3456667788
Q ss_pred CCHHHHHHHH
Q 003205 791 GMAKEAADAA 800 (839)
Q Consensus 791 ~~~~~A~~~a 800 (839)
|++.+|.+..
T Consensus 91 ~~~~~A~~~~ 100 (125)
T 1na0_A 91 GDYDEAIEYY 100 (125)
T ss_dssp TCHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 8888877653
No 357
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=38.57 E-value=2.5e+02 Score=28.21 Aligned_cols=118 Identities=13% Similarity=0.119 Sum_probs=64.0
Q ss_pred CCcEEEEEEeCCeEEEEecCCcc-------------cc-cCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCcccccc
Q 003205 190 TGSVEVLIGTDAGILMLDEDGVQ-------------KV-DDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDES 255 (839)
Q Consensus 190 ~~~~~v~~s~d~tv~l~~~~~~~-------------~~-~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~ 255 (839)
+.+.+++++..|.+|.+...... .. ....|..+....+++++.++|.+|.++....+ +|.
T Consensus 43 t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~------e~~ 116 (256)
T 1zvt_A 43 SNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFN------DLV 116 (256)
T ss_dssp TTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGG------GGC
T ss_pred CCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHH------Hhc
Confidence 45577888888888887654321 11 23456666553456778899999998877632 222
Q ss_pred CCCCCCCCceeeecCceEEE--Ee---cCEEEEEcCCCCceEeccCCCeEEeecCCceEEEccC
Q 003205 256 CESALPPEQIAWCGMDSVLL--YW---NDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNS 314 (839)
Q Consensus 256 ~~~~~~p~~~~WcG~d~vv~--~~---~~~l~lig~~~~~v~f~~~~~~~l~~E~DGvRIit~~ 314 (839)
......-.-|.--.+|.++- .- ++++.++...|..+.|.-+.....-- --|+|++...
T Consensus 117 ~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~gR-a~GV~~i~L~ 179 (256)
T 1zvt_A 117 ARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIP 179 (256)
T ss_dssp CCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSS-BSCEESSCCC
T ss_pred ccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcCc-cCCeEEEEcc
Confidence 11000111111112222221 11 24677787888778887655444333 4567766644
No 358
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=38.48 E-value=25 Score=32.64 Aligned_cols=107 Identities=14% Similarity=0.141 Sum_probs=67.2
Q ss_pred ccCCCHHHHHHHHHHcCCcchHHhHHhHcCCChHHHHHHHHHHHHhCCChhHHHHhhccCCCCCCchHHHHHHHhcCCHH
Q 003205 689 FVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKG 768 (839)
Q Consensus 689 f~~~Sl~~ti~~l~~~~~~k~a~~l~k~fkvsdkr~~~~kl~ala~~~~w~~L~~f~~~KKspIgyepfv~~~~~~~~~~ 768 (839)
+.++|+.+++...=+ .|+.| ..++.|++.++|.+..+++.- |.||.- .
T Consensus 40 ~~~l~~~~a~~rIk~-----~a~~i-------------~~vk~lI~k~~W~~vrn~LR~---~~~~Lr-----------~ 87 (149)
T 1vyk_A 40 LQPLPPTEAAQRAKV-----SASEI-------------LNVKQFIDRKAWPSLQNDLRL---RASYLR-----------Y 87 (149)
T ss_dssp ECCCCHHHHHHHHHH-----HHHHH-------------HTTHHHHHTTCHHHHHHHHHH---HHHHHH-----------H
T ss_pred cCCCCHHHHHHHHHH-----HHHHH-------------HHHHHHhhhccHHHHHHHHHH---hHHHHH-----------H
Confidence 457888888854433 12222 334488999999999999972 222221 1
Q ss_pred HHHHhhccCCCHHHHH---HHHHHcCCHHHHHHHHHhcCCHHHHHHHHHHhcCChhHHHHHHHHHHHhh
Q 003205 769 EALKYIPKLVDPRERA---EAYARIGMAKEAADAASQAKDGELLGRLKLTFAQNAAASSIFDTLRDRLS 834 (839)
Q Consensus 769 ea~~yI~~i~d~~~r~---~~~~~~~~~~~A~~~a~~~kd~~~L~~i~~~~~~~~~~~~~i~~~~~~~~ 834 (839)
.-...|+.++ .++|- +++-++-..-+-++.|.+.||....+..+..+ ...++.++++++
T Consensus 88 Dl~~li~slp-~~~kk~l~~La~~Lf~~le~LD~AAr~kd~~~a~~~Y~~t------~~~ld~vl~~l~ 149 (149)
T 1vyk_A 88 DLKTVISAKP-KDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQT------VSNINEVLAKLG 149 (149)
T ss_dssp HHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHHHHHHC
T ss_pred HHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHHHHHHhC
Confidence 1234445565 43333 55666666777788899999988777766653 356677777663
No 359
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=38.37 E-value=3.4e+02 Score=27.72 Aligned_cols=45 Identities=20% Similarity=0.188 Sum_probs=25.1
Q ss_pred HHHHHHhcCCHHHHHHhhccC-------CC-------HHHHHHHHHHcCCHHHHHHHHH
Q 003205 757 FVEACVDADEKGEALKYIPKL-------VD-------PRERAEAYARIGMAKEAADAAS 801 (839)
Q Consensus 757 fv~~~~~~~~~~ea~~yI~~i-------~d-------~~~r~~~~~~~~~~~~A~~~a~ 801 (839)
...++...|+.++|..++.+. .+ ......+|.+.|++.+|++...
T Consensus 273 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 273 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444555666666665555442 11 1344566677777777766533
No 360
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=38.02 E-value=3.6e+02 Score=27.86 Aligned_cols=78 Identities=12% Similarity=-0.044 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhCCChhHHHHhhcc-----CCC------CCCchHHHHHHHhcCCHHHHHHhhccCCCH------------
Q 003205 724 WYWLKVFALATKRDWDALERFSKE-----KRP------PIGYRPFVEACVDADEKGEALKYIPKLVDP------------ 780 (839)
Q Consensus 724 ~~~~kl~ala~~~~w~~L~~f~~~-----KKs------pIgyepfv~~~~~~~~~~ea~~yI~~i~d~------------ 780 (839)
.+...-..+...++|++-...... .+. +..+.-...++...|+.++|..|+.+.-..
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 344 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence 566777788899999876655531 111 122334566778889998888877764211
Q ss_pred --HHHHHHHHHcCCHHHHHHHHH
Q 003205 781 --RERAEAYARIGMAKEAADAAS 801 (839)
Q Consensus 781 --~~r~~~~~~~~~~~~A~~~a~ 801 (839)
.....+|.+.|++.+|.+...
T Consensus 345 ~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 345 ACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHH
Confidence 234556677777777766533
No 361
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=37.05 E-value=0.82 Score=51.01 Aligned_cols=92 Identities=17% Similarity=0.159 Sum_probs=79.2
Q ss_pred HHHHHHHHHhCCChhHHHHhhccCCCCCCchHHHHHHHhcCCHHHHHHhhccCCCHHHHHHHHHHcCCHHHHHHHHHhcC
Q 003205 725 YWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIGMAKEAADAASQAK 804 (839)
Q Consensus 725 ~~~kl~ala~~~~w~~L~~f~~~KKspIgyepfv~~~~~~~~~~ea~~yI~~i~d~~~r~~~~~~~~~~~~A~~~a~~~k 804 (839)
.---+-+||+.++-.+||.|+.. -..-..+.+-|.|.+.|..+.|+-+-..|++-.+-.-.++++|+|.+|++.|.+.+
T Consensus 119 DteLi~ayAk~~rL~elEefl~~-~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 119 ETELIFALAKTNRLAELEEFING-PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp THHHHHHHHTSCSSSTTTSTTSC-CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHHHHHHHhhCcHHHHHHHHcC-CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33456699999999999999984 33457788999999999999999999999988888888999999999999999999
Q ss_pred CHHHHHHHHHHhc
Q 003205 805 DGELLGRLKLTFA 817 (839)
Q Consensus 805 d~~~L~~i~~~~~ 817 (839)
++..-+++..-|-
T Consensus 198 s~ktWKeV~~ACv 210 (624)
T 3lvg_A 198 STRTWKEVCFACV 210 (624)
T ss_dssp SSCSHHHHTHHHH
T ss_pred ChhHHHHHHHHHh
Confidence 9888888877764
No 362
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=36.79 E-value=5.1e+02 Score=29.26 Aligned_cols=58 Identities=14% Similarity=0.059 Sum_probs=31.7
Q ss_pred CCeEEEEecC-Ccc---cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCC
Q 003205 200 DAGILMLDED-GVQ---KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCE 257 (839)
Q Consensus 200 d~tv~l~~~~-~~~---~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~ 257 (839)
+++|+.||.. |.. .....++..-.++..|..+..++.||.++.++.+-++.+-++.+.
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~ 526 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG 526 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC
Confidence 4566777754 322 111222222222223456666777788888877667777666654
No 363
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=36.31 E-value=89 Score=29.18 Aligned_cols=99 Identities=12% Similarity=0.040 Sum_probs=61.8
Q ss_pred HcCCcchHHhHHhHcCCChHHHHHHHHHHHHhCCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC
Q 003205 703 VLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL 777 (839)
Q Consensus 703 ~~~~~k~a~~l~k~fkvsdkr~~~~kl~ala~~~~w~~L~~f~~~-----KKspIgyepfv~~~~~~~~~~ea~~yI~~i 777 (839)
..|+.+.|...-++.-=+....|...-..+.+.++|++-...... ...+..|--...++...|+.++|..+..++
T Consensus 18 ~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 97 (213)
T 1hh8_A 18 DKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEA 97 (213)
T ss_dssp HTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 345555544444333222445677777788888888776555431 234444555667778888988887666543
Q ss_pred CC------------------------HHHHHHHHHHcCCHHHHHHHHH
Q 003205 778 VD------------------------PRERAEAYARIGMAKEAADAAS 801 (839)
Q Consensus 778 ~d------------------------~~~r~~~~~~~~~~~~A~~~a~ 801 (839)
-. .-.+...|.+.|++.+|++...
T Consensus 98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 98 LIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp HHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 11 1566778888888888887643
No 364
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=35.64 E-value=3.6e+02 Score=27.24 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=41.4
Q ss_pred CCeEEEeec--CCCeEEEEEeCCeEEEEeCCCCcc-------ccCCCCCccccccCeEEEEEEC--CeEEEEecCCeEEE
Q 003205 88 GRLIGMSWS--EDQTLICVVQDGTVYRYNIHAELI-------EPNASMGKECFEENVVECVFWG--NGVVCVTEANRYFC 156 (839)
Q Consensus 88 ~~I~~~~fs--~de~Lv~v~~dGtv~l~~~~G~~~-------~~~~g~~~~~~~~~V~~~~~~~--~G~v~~t~~~~~~~ 156 (839)
..|+.+--. ++..+++++.+|.++..++. ++. -..+.. .+.+..+...+ +-++++|..++.+.
T Consensus 68 e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~-~~~~~~~G~~~i~lke-----gD~l~~~~~~~~~~~ill~T~~G~~~r 141 (276)
T 3no0_A 68 EKIVGAFIREKFGNRLLLATKKGYVKKIPLA-EFEYKAQGMPIIKLTE-----GDEVVSIASSVDETHILLFTKKGRVAR 141 (276)
T ss_dssp CCEEEEEEGGGSCSEEEEEETTSEEEEEEGG-GTTTCSTTEECSCCCT-----TCCEEEEEECCSSCEEEEEETTSEEEE
T ss_pred CEEEEEECCcCCCCEEEEEeCCCEEEEEEHH-HhhhhcCCeEEEecCC-----CCEEEEEEEeCCCCEEEEEECCCEEEE
Confidence 577777332 34568999999999988643 111 111211 45566666543 45888899999877
Q ss_pred Ee
Q 003205 157 MA 158 (839)
Q Consensus 157 v~ 158 (839)
+.
T Consensus 142 ~~ 143 (276)
T 3no0_A 142 FS 143 (276)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 365
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=35.52 E-value=4.1e+02 Score=27.86 Aligned_cols=141 Identities=10% Similarity=0.072 Sum_probs=77.8
Q ss_pred CCceEEEEcCCCCceeEEEecCC------CCCeEEEee---cCCCeEEEEEe--------------CCeEEEEeCC----
Q 003205 64 ALRKLRIFNSAGVLISETVWKNP------GGRLIGMSW---SEDQTLICVVQ--------------DGTVYRYNIH---- 116 (839)
Q Consensus 64 ~~~~I~iy~~~G~ll~ti~~~~~------~~~I~~~~f---s~de~Lv~v~~--------------dGtv~l~~~~---- 116 (839)
..++|..|+.+|.-+..+..... ...+.+++| .|++.|.++.. +..+..||+.
T Consensus 33 ~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~t 112 (334)
T 2p9w_A 33 YKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSEN 112 (334)
T ss_dssp TTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTT
T ss_pred cCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCC
Confidence 46777778877554444422110 014689999 57888765444 5678889987
Q ss_pred CCccc-cCCCCCccc-------cccCeEEEEEECCeEEEEec--C-CeEEEEecCCCc-eEEEcCCCCC--CCCCceEEE
Q 003205 117 AELIE-PNASMGKEC-------FEENVVECVFWGNGVVCVTE--A-NRYFCMADFATM-KVCELARPEV--EELPHCVAV 182 (839)
Q Consensus 117 G~~~~-~~~g~~~~~-------~~~~V~~~~~~~~G~v~~t~--~-~~~~~v~~~~~~-~~~~l~~~~~--~~~~~~w~v 182 (839)
|+... ..+....+- .-....++.+=++|-+.+|. . +.++.|.--... ...-+..++. ...+....
T Consensus 113 g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv- 191 (334)
T 2p9w_A 113 SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGIT- 191 (334)
T ss_dssp CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEE-
T ss_pred CCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEE-
Confidence 66532 111110000 01236677777788888774 3 457777531111 1111111110 01233332
Q ss_pred eCCCCCCCCcEEEEEEeCCeEEEEecC
Q 003205 183 IEPKYTMTGSVEVLIGTDAGILMLDED 209 (839)
Q Consensus 183 i~~~~S~~~~~~v~~s~d~tv~l~~~~ 209 (839)
++|+|.+++....++.++.+|..
T Consensus 192 ----~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 192 ----FDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp ----EETTTTEEEEESSSSSEEEEECS
T ss_pred ----EeCCCCEEEEEcCCCeEEEEcCC
Confidence 34489988888778999999876
No 366
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=35.49 E-value=1.5e+02 Score=25.77 Aligned_cols=76 Identities=13% Similarity=0.086 Sum_probs=42.0
Q ss_pred HHHHHHHhCCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C-C---HHHHHHHHHHcCCH
Q 003205 727 LKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V-D---PRERAEAYARIGMA 793 (839)
Q Consensus 727 ~kl~ala~~~~w~~L~~f~~~-----KKspIgyepfv~~~~~~~~~~ea~~yI~~i----~-d---~~~r~~~~~~~~~~ 793 (839)
-.-..+.+.++|++-..+... ...+-.|.-...++...|+.++|..+..+. | + .-....+|...|++
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 334455566666555444421 122222333445556667777766555442 1 1 14667788889999
Q ss_pred HHHHHHHHh
Q 003205 794 KEAADAASQ 802 (839)
Q Consensus 794 ~~A~~~a~~ 802 (839)
.+|++...+
T Consensus 103 ~~A~~~~~~ 111 (142)
T 2xcb_A 103 DGAESGFYS 111 (142)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998876543
No 367
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=35.02 E-value=4.4e+02 Score=28.05 Aligned_cols=174 Identities=10% Similarity=0.021 Sum_probs=86.0
Q ss_pred CCceEEEEcC----CCCce--------eEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEE--eCCCCccccC------
Q 003205 64 ALRKLRIFNS----AGVLI--------SETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRY--NIHAELIEPN------ 123 (839)
Q Consensus 64 ~~~~I~iy~~----~G~ll--------~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~--~~~G~~~~~~------ 123 (839)
.++.|..|-. .|++= .-+.... ..+|+.++-. ..+.+++++||.|+.| +-.|++-.-.
T Consensus 144 ~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~-~~~i~~va~G-~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~ 221 (423)
T 3mvd_K 144 EDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLME-GTVCCSIASG-ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISG 221 (423)
T ss_dssp TTSCEEEEECEECSSSEEESBTTBCEEEEEESST-TCCEEEEEEC-SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTS
T ss_pred CCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecC-CCcEEEEecC-CCeEEEEecCCeEEEeeCCcCCccCCCccccccc
Confidence 4688888853 45431 1112222 2468888765 5678899999999999 4566651100
Q ss_pred ----------CCCCccc-cccCeEEEEEECCeEEEE-ecCCeEEEEe-cCCCceEEEcCCCCCCCCCceEEEeCC-----
Q 003205 124 ----------ASMGKEC-FEENVVECVFWGNGVVCV-TEANRYFCMA-DFATMKVCELARPEVEELPHCVAVIEP----- 185 (839)
Q Consensus 124 ----------~g~~~~~-~~~~V~~~~~~~~G~v~~-t~~~~~~~v~-~~~~~~~~~l~~~~~~~~~~~w~vi~~----- 185 (839)
.+..+.. ....|..+..-..-.+++ +.++.+|.+= |..+. |...+. .......-+..
T Consensus 222 ~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gq----lg~~~~-~~~~~~~p~~~~~~~v 296 (423)
T 3mvd_K 222 EGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQ----LAHETK-GKEFALTPIKTELKDI 296 (423)
T ss_dssp CSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCT----TSSCCT-TCSEEEEEEEECCCSE
T ss_pred ccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCc----CCCCCC-CCceeeeeEEcCCCCe
Confidence 0000000 022355444444333344 6788877652 21111 110000 00000000000
Q ss_pred -CCCCCCcEEEEEEeCCeEEEEecCCc--c---------------cccCCCceEEEECCCCcEEEEeecCCeEEEEecC
Q 003205 186 -KYTMTGSVEVLIGTDAGILMLDEDGV--Q---------------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (839)
Q Consensus 186 -~~S~~~~~~v~~s~d~tv~l~~~~~~--~---------------~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd 246 (839)
..+......+.+..++.||.|-.... . ......|..|+...+ +.+..+.+|+++.|-.+
T Consensus 297 ~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~--hs~alt~~G~v~~wG~n 373 (423)
T 3mvd_K 297 RHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV--CSYAVTIDGKLYSWGSG 373 (423)
T ss_dssp EEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT--EEEEEETTSCEEEEECC
T ss_pred EEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC--eEEEEcCCCCEEEECCC
Confidence 01113344556677899999965421 1 011124666666644 65666899999999755
No 368
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=34.98 E-value=2.1e+02 Score=27.12 Aligned_cols=102 Identities=11% Similarity=-0.045 Sum_probs=66.6
Q ss_pred HHHcCCcchHHhHHhH-cC--CChHHHHHHHHHHHHhCCChhHHHHhhcc--C--CCCC---CchHHHHHHHhcCCHHHH
Q 003205 701 CIVLGNHRAAMKVKTE-FK--VSEKRWYWLKVFALATKRDWDALERFSKE--K--RPPI---GYRPFVEACVDADEKGEA 770 (839)
Q Consensus 701 l~~~~~~k~a~~l~k~-fk--vsdkr~~~~kl~ala~~~~w~~L~~f~~~--K--KspI---gyepfv~~~~~~~~~~ea 770 (839)
+...|+.+.|.+.-++ .+ -.+...|......+...++|++-..+... + ..|- .+.-...++...|+.++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 4456777666554332 22 23456777778889999999887666532 2 2222 222355677889999999
Q ss_pred HHhhccC----CCH----HHHHHHHHHcCCHHHHHHHHHh
Q 003205 771 LKYIPKL----VDP----RERAEAYARIGMAKEAADAASQ 802 (839)
Q Consensus 771 ~~yI~~i----~d~----~~r~~~~~~~~~~~~A~~~a~~ 802 (839)
..++.++ ++. .....+|.+.|++.+|.+...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 200 (252)
T 2ho1_A 161 KEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL 200 (252)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8877764 331 4566778899999999877655
No 369
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=34.53 E-value=4.5e+02 Score=27.95 Aligned_cols=230 Identities=13% Similarity=0.034 Sum_probs=119.6
Q ss_pred CCCceeEEEecCCCCCeEEEeecCC-CeEEEEEeCCeEEEEe---CC-------CCccccCCCCCccccccCeEEEEEEC
Q 003205 74 AGVLISETVWKNPGGRLIGMSWSED-QTLICVVQDGTVYRYN---IH-------AELIEPNASMGKECFEENVVECVFWG 142 (839)
Q Consensus 74 ~G~ll~ti~~~~~~~~I~~~~fs~d-e~Lv~v~~dGtv~l~~---~~-------G~~~~~~~g~~~~~~~~~V~~~~~~~ 142 (839)
.|+-+..+.... .+.+..+.-+.. ++++++++.|.++.+. +. |......+.-. + .+.|..+-.-+
T Consensus 33 ~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~-~--~e~Iv~~~~~~ 108 (370)
T 3l6v_A 33 GGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLE-S--GERVQAVLPVR 108 (370)
T ss_dssp CCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCC-T--TCCEEEEEEES
T ss_pred CCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCC-C--CCEEEEEEEec
Confidence 344556666665 256777766654 4588999999887664 21 22211111111 1 45677665432
Q ss_pred -----CeEEEEecCCeEEEEe--cCCCce--EEEcCCCCCCCCCc-eEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc
Q 003205 143 -----NGVVCVTEANRYFCMA--DFATMK--VCELARPEVEELPH-CVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ 212 (839)
Q Consensus 143 -----~G~v~~t~~~~~~~v~--~~~~~~--~~~l~~~~~~~~~~-~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~ 212 (839)
.-++++|.+|.+..+. .+..++ .... ..+..... .+..+. .+.+.+++++.+|.+..+..+...
T Consensus 109 ~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~a--i~L~~~d~lv~v~~~----~~~~~i~l~T~~G~~irf~~~~v~ 182 (370)
T 3l6v_A 109 EYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIA--INLDEGDALVGVALT----DGDRDVLLFASNGKTVRFGESTVR 182 (370)
T ss_dssp CCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEES--SCCCTTCCEEEEEEE----CSCCEEEEEETTSEEEEEEGGGSC
T ss_pred cCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEE--EEeCCCCEEEEEEEe----CCCceEEEEeCCCeEEEEEccccC
Confidence 2477888888765543 332211 1111 11222222 222222 144567777778887777765332
Q ss_pred ------------c-ccCCCceEEEECC-----------------------------------CCcEEEEeecCCeEEEEe
Q 003205 213 ------------K-VDDTLSQKMAVSP-----------------------------------NGNFVACFTHDGRLVVNN 244 (839)
Q Consensus 213 ------------~-~~~~~i~~ia~Sp-----------------------------------ng~~iA~~~~~g~i~i~s 244 (839)
. .....|..+.+.+ +++.|.++|.+|..+..+
T Consensus 183 ~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~ 262 (370)
T 3l6v_A 183 SMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTP 262 (370)
T ss_dssp BCCTTCCCEECCCCCTTCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEE
T ss_pred ccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEE
Confidence 1 1234455555544 456788888888877665
Q ss_pred cCCCCccccccCCCCC--CCCceeee-cCceEEEEe----cCEEEEEcCCCCceEeccCCCeEEeecCCceEEEccCcce
Q 003205 245 TNFSSPVIDESCESAL--PPEQIAWC-GMDSVLLYW----NDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSME 317 (839)
Q Consensus 245 sd~~~~l~e~~~~~~~--~p~~~~Wc-G~d~vv~~~----~~~l~lig~~~~~v~f~~~~~~~l~~E~DGvRIit~~~~~ 317 (839)
.+ ||...... ....+..- .++.++..+ ++++.++...|..+++..+.....-----|++++..+..+
T Consensus 263 ~~------e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~i~~~gR~t~Gv~li~l~~~~ 336 (370)
T 3l6v_A 263 LA------EYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGE 336 (370)
T ss_dssp GG------GSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGGGSCBCCSSSCCEESSCCCTTC
T ss_pred HH------HhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHhhCCccCCCCCCeEEEecCCCC
Confidence 43 33322100 01111111 123333221 3588899888988888766544443334488888876555
Q ss_pred ee
Q 003205 318 FL 319 (839)
Q Consensus 318 ~l 319 (839)
-+
T Consensus 337 ~v 338 (370)
T 3l6v_A 337 KL 338 (370)
T ss_dssp CE
T ss_pred EE
Confidence 43
No 370
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=34.40 E-value=1.3e+02 Score=26.75 Aligned_cols=80 Identities=13% Similarity=-0.031 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhCCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C-CH---HHHHHHHH
Q 003205 722 KRWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V-DP---RERAEAYA 788 (839)
Q Consensus 722 kr~~~~kl~ala~~~~w~~L~~f~~~-----KKspIgyepfv~~~~~~~~~~ea~~yI~~i----~-d~---~~r~~~~~ 788 (839)
...|......+...++|++-...... ...+..+.-...++...|+.++|..++.++ + ++ .....+|.
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 155 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYE 155 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 45666667778888888776655532 223333444566777888888887766653 2 11 44556677
Q ss_pred HcCCHHHHHHHHH
Q 003205 789 RIGMAKEAADAAS 801 (839)
Q Consensus 789 ~~~~~~~A~~~a~ 801 (839)
+.|++.+|.+...
T Consensus 156 ~~~~~~~A~~~~~ 168 (186)
T 3as5_A 156 QMGRHEEALPHFK 168 (186)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 7777777775543
No 371
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=34.39 E-value=1.4e+02 Score=26.72 Aligned_cols=79 Identities=11% Similarity=-0.017 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhCCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----CC-H---HHHHHHHHH
Q 003205 723 RWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----VD-P---RERAEAYAR 789 (839)
Q Consensus 723 r~~~~kl~ala~~~~w~~L~~f~~~-----KKspIgyepfv~~~~~~~~~~ea~~yI~~i----~d-~---~~r~~~~~~ 789 (839)
..|+..-..+.+.++|++-..+... ...+..|--...++...|+.++|..+..+. ++ . -.+..+|.+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3455556666777777665544421 233444445566677788888877666553 11 1 567778888
Q ss_pred cCCHHHHHHHHH
Q 003205 790 IGMAKEAADAAS 801 (839)
Q Consensus 790 ~~~~~~A~~~a~ 801 (839)
.|++.+|++...
T Consensus 92 ~g~~~~A~~~~~ 103 (164)
T 3sz7_A 92 MADYKGAKEAYE 103 (164)
T ss_dssp TTCHHHHHHHHH
T ss_pred ccCHHHHHHHHH
Confidence 888888886544
No 372
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=32.90 E-value=2.7e+02 Score=28.19 Aligned_cols=7 Identities=14% Similarity=0.154 Sum_probs=3.7
Q ss_pred CeEEEEe
Q 003205 238 GRLVVNN 244 (839)
Q Consensus 238 g~i~i~s 244 (839)
++||+.+
T Consensus 97 ~~ly~lt 103 (262)
T 3nol_A 97 DKIVGLT 103 (262)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 4566554
No 373
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=32.59 E-value=86 Score=32.03 Aligned_cols=98 Identities=7% Similarity=-0.050 Sum_probs=53.8
Q ss_pred CCcEEEEEE-eCCeEEEEecCCcc---cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCC----CC
Q 003205 190 TGSVEVLIG-TDAGILMLDEDGVQ---KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESA----LP 261 (839)
Q Consensus 190 ~~~~~v~~s-~d~tv~l~~~~~~~---~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~----~~ 261 (839)
+|+.+..+. .++.++++|..... .....+ ....+++||+.+...+.+++|++++..-.+.+........ ..
T Consensus 104 ~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~-eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~ 182 (268)
T 3nok_A 104 DGERLYQLTWTEGLLFTWSGMPPQRERTTRYSG-EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVEL 182 (268)
T ss_dssp CSSCEEEEESSSCEEEEEETTTTEEEEEEECSS-CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred eCCEEEEEEccCCEEEEEECCcCcEEEEEeCCC-ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccc
Confidence 445444333 38889999977543 111111 2344557888777766677899988765555544433211 12
Q ss_pred CCceeeecCceEEEEe-cCEEEEEcCCC
Q 003205 262 PEQIAWCGMDSVLLYW-NDMLVMVAPQA 288 (839)
Q Consensus 262 p~~~~WcG~d~vv~~~-~~~l~lig~~~ 288 (839)
+..|.|-+..--+-.| .+.|..|-|..
T Consensus 183 lNeLe~~dG~lyanvw~s~~I~vIDp~T 210 (268)
T 3nok_A 183 INELECANGVIYANIWHSSDVLEIDPAT 210 (268)
T ss_dssp EEEEEEETTEEEEEETTCSEEEEECTTT
T ss_pred ccccEEeCCEEEEEECCCCeEEEEeCCC
Confidence 3466776443222344 34666666654
No 374
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=32.39 E-value=4.8e+02 Score=27.65 Aligned_cols=191 Identities=12% Similarity=0.111 Sum_probs=104.9
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCC-ceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEeC
Q 003205 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV-LISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNI 115 (839)
Q Consensus 37 ~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~-ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~~ 115 (839)
.....|.-..||+-. ..+++|||..-+ .+.+...+ ..|+...|-.+..|..|+++. |+-|++
T Consensus 71 sAIMnP~~~ViALra-------------g~~LQiFnletK~klks~~~~---e~VvfWkWis~~~L~lVT~ta-VyHWs~ 133 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-------------GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWISLNTVALVTDNA-VYHWSM 133 (365)
T ss_dssp EEEECSSSSEEEEEE-------------TTEEEEEETTTTEEEEEEECS---SCEEEEEECSSSEEEEEESSE-EEEEES
T ss_pred eeeeCCCccEEEEec-------------CCeEEEechHHhhhhcceecC---CccEEEEecCCCeEEEEcCCc-EEEEcc
Confidence 444556655666542 588999997655 67777653 689999999999999999887 667999
Q ss_pred CCCc--cccCCCCC-ccccccCeEEEEEECCeEEEEe-----cCCeE---EEEecCCCceEEEcCCCCCCCCCceEEEeC
Q 003205 116 HAEL--IEPNASMG-KECFEENVVECVFWGNGVVCVT-----EANRY---FCMADFATMKVCELARPEVEELPHCVAVIE 184 (839)
Q Consensus 116 ~G~~--~~~~~g~~-~~~~~~~V~~~~~~~~G~v~~t-----~~~~~---~~v~~~~~~~~~~l~~~~~~~~~~~w~vi~ 184 (839)
.|+- .+.+-.|. .. ...|+.-+..+++.-++. .++++ ..+.+.+....+.+. +...++.-+.
T Consensus 134 ~~~s~P~kvFdR~~~L~--~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ie-----Ghaa~F~~~~ 206 (365)
T 2xzh_A 134 EGESQPVKMFDRHSSLA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE-----GHAASFAQFK 206 (365)
T ss_dssp STTCCCEEEEECCGGGT--TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEEC-----CSEEEEEEEC
T ss_pred cCCCCCceeeecchhcc--cceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceee-----eeeeeeEEEe
Confidence 8742 11111111 11 345666666554433222 22321 122222222222221 2223343222
Q ss_pred C-CCCCCCcEEEEEEe---CCeEEEEecCC----cc----c-------c--cCCCceEEEECCCCcEEEEeecCCeEEEE
Q 003205 185 P-KYTMTGSVEVLIGT---DAGILMLDEDG----VQ----K-------V--DDTLSQKMAVSPNGNFVACFTHDGRLVVN 243 (839)
Q Consensus 185 ~-~~S~~~~~~v~~s~---d~tv~l~~~~~----~~----~-------~--~~~~i~~ia~Spng~~iA~~~~~g~i~i~ 243 (839)
. ..+...++.+++.. ++.+.+..... .. + . ..+==.+|.+|+.+..|-+.|.-|.++++
T Consensus 207 ~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihly 286 (365)
T 2xzh_A 207 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLY 286 (365)
T ss_dssp CTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred cCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEE
Confidence 2 12222234444444 24666665532 21 0 0 01112478888888899999999999999
Q ss_pred ecCCCCcc
Q 003205 244 NTNFSSPV 251 (839)
Q Consensus 244 ssd~~~~l 251 (839)
+...+..+
T Consensus 287 DleTgt~i 294 (365)
T 2xzh_A 287 DLETGTCI 294 (365)
T ss_dssp ETTTCCEE
T ss_pred EcccCcEE
Confidence 76655555
No 375
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=31.90 E-value=3.3e+02 Score=25.68 Aligned_cols=102 Identities=9% Similarity=-0.062 Sum_probs=65.6
Q ss_pred HHHHHcCCcchHHhHHhHc-C--C-C-hHHHHHHHHHHHHhCCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHH
Q 003205 699 RTCIVLGNHRAAMKVKTEF-K--V-S-EKRWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKG 768 (839)
Q Consensus 699 ~~l~~~~~~k~a~~l~k~f-k--v-s-dkr~~~~kl~ala~~~~w~~L~~f~~~-----KKspIgyepfv~~~~~~~~~~ 768 (839)
..+...|+.+.|.+.-++. + . | ....+......+.+.+++++-..+... ...+..+.-...++...|+.+
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Confidence 3344567776666554433 3 2 2 345666677788899999887666532 233444556777888999999
Q ss_pred HHHHhhccC----CC-H---HHHHHHHHHcCCHHHHHHHH
Q 003205 769 EALKYIPKL----VD-P---RERAEAYARIGMAKEAADAA 800 (839)
Q Consensus 769 ea~~yI~~i----~d-~---~~r~~~~~~~~~~~~A~~~a 800 (839)
+|..++.++ ++ . .....+|.+.|++.+|.+..
T Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 232 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYG 232 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 987776653 21 1 45566777888888876543
No 376
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=31.61 E-value=4.1e+02 Score=26.87 Aligned_cols=82 Identities=7% Similarity=-0.034 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHhCCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----CC-H---HHHHHHH
Q 003205 721 EKRWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----VD-P---RERAEAY 787 (839)
Q Consensus 721 dkr~~~~kl~ala~~~~w~~L~~f~~~-----KKspIgyepfv~~~~~~~~~~ea~~yI~~i----~d-~---~~r~~~~ 787 (839)
+...|...-..+...+++++-...... ...+..|.-...++.+.|+.++|..+..+. ++ . .....+|
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC 291 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 345666777778888888776655532 234445556677788888888887766653 22 2 4566778
Q ss_pred HHcCCHHHHHHHHHh
Q 003205 788 ARIGMAKEAADAASQ 802 (839)
Q Consensus 788 ~~~~~~~~A~~~a~~ 802 (839)
.+.|++.+|++...+
T Consensus 292 ~~~g~~~~A~~~~~~ 306 (365)
T 4eqf_A 292 INLGAYREAVSNFLT 306 (365)
T ss_dssp HHHTCCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHH
Confidence 888988888876543
No 377
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=30.65 E-value=1.8e+02 Score=24.05 Aligned_cols=21 Identities=19% Similarity=0.147 Sum_probs=14.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 003205 781 RERAEAYARIGMAKEAADAAS 801 (839)
Q Consensus 781 ~~r~~~~~~~~~~~~A~~~a~ 801 (839)
-....+|.+.|++.+|++...
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~ 108 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQ 108 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 445667778888888876544
No 378
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=30.64 E-value=5.1e+02 Score=27.46 Aligned_cols=143 Identities=10% Similarity=0.105 Sum_probs=75.5
Q ss_pred cCCCe-EEEEEeCCeEEEEeCC--------CC-ccccCCCCCccccccCeEEEEEEC--CeEEEEecCCeEEEEecCCCc
Q 003205 96 SEDQT-LICVVQDGTVYRYNIH--------AE-LIEPNASMGKECFEENVVECVFWG--NGVVCVTEANRYFCMADFATM 163 (839)
Q Consensus 96 s~de~-Lv~v~~dGtv~l~~~~--------G~-~~~~~~g~~~~~~~~~V~~~~~~~--~G~v~~t~~~~~~~v~~~~~~ 163 (839)
-|+|. +++++.+|.|+.-++. |+ .....+.. .+.|..+.... +-++++|..|+.|.+.-.+=|
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-----~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip 78 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-----EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLP 78 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-----CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSC
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-----CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCc
Confidence 45665 6899999999975321 11 11112222 34566555544 557889999998877532211
Q ss_pred ------eEEEcCC-CCCCCCCceEEEeC-CCCCCCCcEEEEEEeCCeEEEEecCCcc----------c-ccCCCceEEEE
Q 003205 164 ------KVCELAR-PEVEELPHCVAVIE-PKYTMTGSVEVLIGTDAGILMLDEDGVQ----------K-VDDTLSQKMAV 224 (839)
Q Consensus 164 ------~~~~l~~-~~~~~~~~~w~vi~-~~~S~~~~~~v~~s~d~tv~l~~~~~~~----------~-~~~~~i~~ia~ 224 (839)
+...+.+ .++......-.+++ ..|. ++..+++++.+|.++......-. . ...+.+..+.+
T Consensus 79 ~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~-~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~ 157 (370)
T 3l6v_A 79 EAGSNARGRPIINWIPLESGERVQAVLPVREYA-DNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVAL 157 (370)
T ss_dssp BCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCC-TTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEE
T ss_pred CCCcccCCcCHhhccCCCCCCEEEEEEEeccCC-CCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEE
Confidence 1222211 11221222222222 1232 34578888889988887755322 1 12334444444
Q ss_pred CCCCcEEEEeecCCeEEEEe
Q 003205 225 SPNGNFVACFTHDGRLVVNN 244 (839)
Q Consensus 225 Spng~~iA~~~~~g~i~i~s 244 (839)
....+.|.++|.+|.+..++
T Consensus 158 ~~~~~~i~l~T~~G~~irf~ 177 (370)
T 3l6v_A 158 TDGDRDVLLFASNGKTVRFG 177 (370)
T ss_dssp ECSCCEEEEEETTSEEEEEE
T ss_pred eCCCceEEEEeCCCeEEEEE
Confidence 44445777777777754444
No 379
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=29.92 E-value=1.2e+02 Score=33.55 Aligned_cols=62 Identities=21% Similarity=0.264 Sum_probs=42.1
Q ss_pred CCeEEEeecCCCe--EEEEEeCCeEEEEeCCCCccc-cCC--CCCcc-----ccccCeEEEEEEC----CeEEEEe
Q 003205 88 GRLIGMSWSEDQT--LICVVQDGTVYRYNIHAELIE-PNA--SMGKE-----CFEENVVECVFWG----NGVVCVT 149 (839)
Q Consensus 88 ~~I~~~~fs~de~--Lv~v~~dGtv~l~~~~G~~~~-~~~--g~~~~-----~~~~~V~~~~~~~----~G~v~~t 149 (839)
...+.|.|.||+. ++++...|.|++++..|.... ... ..... .-+.+...+.|.| +|.+.++
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~ 89 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVS 89 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEE
Confidence 6779999999995 999999999999987765311 111 00000 0146788888887 4777665
No 380
>1xks_A Nuclear pore complex protein NUP133; beta-propeller, helical insertions, protein transport; 2.35A {Homo sapiens} SCOP: b.69.14.1
Probab=29.82 E-value=4.9e+02 Score=28.52 Aligned_cols=108 Identities=14% Similarity=0.222 Sum_probs=62.2
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCC---cee---EEEecCC----CCCeEEEeecCCC----
Q 003205 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV---LIS---ETVWKNP----GGRLIGMSWSEDQ---- 99 (839)
Q Consensus 34 ~~~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~---ll~---ti~~~~~----~~~I~~~~fs~de---- 99 (839)
......++ ..|.--+.. ...+.||+++-. .+. .++.+.. .+.++++-+.+..
T Consensus 39 ~~~sg~i~-~~GyAlvv~-------------~~~l~VW~y~~~~~~~~~~c~~lpLp~sd~~~~~~lvsi~~~~~~~~~~ 104 (450)
T 1xks_A 39 DQLTINID-EGGWACLVC-------------KEKLIIWKIALSPITKLSVCKELQLPPSDFHWSADLVALSYSSPSGEAH 104 (450)
T ss_dssp SCEEEEEC-TTSEEEEEE-------------TTEEEEEECCSSCCGGGCCEEEEECCCCSSCCCGGGEEEEECC------
T ss_pred cceEEEEC-CCcEEEEEe-------------CCeEEEEeecCCCCCCcccceeccCCccccccCCcEEEEEcCCCccccc
Confidence 44566777 555533332 467889987654 222 2344321 1236777666552
Q ss_pred ---e--EEEEEeCCeEEEE-eCC--CCccccCCCCCccccccCeEEE-EEECCeEEEEecCCeEEEEe
Q 003205 100 ---T--LICVVQDGTVYRY-NIH--AELIEPNASMGKECFEENVVEC-VFWGNGVVCVTEANRYFCMA 158 (839)
Q Consensus 100 ---~--Lv~v~~dGtv~l~-~~~--G~~~~~~~g~~~~~~~~~V~~~-~~~~~G~v~~t~~~~~~~v~ 158 (839)
. +++|+.+|.||.| ++. ++..+....-.- .+.|..+ ..-|.|+++.|+.++++.+.
T Consensus 105 s~~~pGlliVsptG~VryWesIs~~~~~~ei~~~L~~---~E~vt~l~n~epaGfIlaTStgrl~~ls 169 (450)
T 1xks_A 105 STQAVAVMVATREGSIRYWPSLAGEDTYTEAFVDSGG---DKTYSFLTAVQGGSFILSSSGSQLIRLI 169 (450)
T ss_dssp -CTTEEEEEECTTCEEEEESCTTCTTCCEEEECC-------CCEEEEEEETTTEEEEEETTCCEEEEE
T ss_pred cCCCceEEEEcCCccEEEccccCCCCceEEEEecCCC---CceEEEEeecCCceEEEEeccceEEEEE
Confidence 2 6788889999999 454 344443322210 1234433 33469999999999988776
No 381
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=28.95 E-value=3.2e+02 Score=30.80 Aligned_cols=19 Identities=16% Similarity=0.111 Sum_probs=12.1
Q ss_pred CceEEEEcC-CCCceeEEEe
Q 003205 65 LRKLRIFNS-AGVLISETVW 83 (839)
Q Consensus 65 ~~~I~iy~~-~G~ll~ti~~ 83 (839)
++.|..|+. +|+++.++..
T Consensus 175 ~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 175 RGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp CCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEECCCCcEEEEEcc
Confidence 466777774 5777766554
No 382
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=28.79 E-value=4.9e+02 Score=26.65 Aligned_cols=144 Identities=13% Similarity=0.195 Sum_probs=74.4
Q ss_pred CCCe-EEEEEeCCeEEEEeCCCCccc-c--CCCC----CccccccCeEEEEEE--CCeEEEEecCCeEEEEecCCCc---
Q 003205 97 EDQT-LICVVQDGTVYRYNIHAELIE-P--NASM----GKECFEENVVECVFW--GNGVVCVTEANRYFCMADFATM--- 163 (839)
Q Consensus 97 ~de~-Lv~v~~dGtv~l~~~~G~~~~-~--~~g~----~~~~~~~~V~~~~~~--~~G~v~~t~~~~~~~v~~~~~~--- 163 (839)
|+|. +++++.+|.|+.-++. +|.. . ..|. -.+ .+.+..+... .+-++++|..|+.|.+.-.+=|
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~-~~~~~~~~~~g~~~~~~ke--~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~ 77 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLS-EYEAQRRGGKGKSAARIKE--EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEAT 77 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC-----------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCC
T ss_pred CCCcEEEEEeCCCEEEEeeHH-HhhhhccCCCCceeeeeCC--CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCC
Confidence 4555 6899999999877543 1210 0 0010 001 3445544443 3778899999998877532211
Q ss_pred ---eEEEcCC-CCCCCCCceEEEeC-CCCCCCCcEEEEEEeCCeEEEEecCCcc----------c-ccCCCceEEEECCC
Q 003205 164 ---KVCELAR-PEVEELPHCVAVIE-PKYTMTGSVEVLIGTDAGILMLDEDGVQ----------K-VDDTLSQKMAVSPN 227 (839)
Q Consensus 164 ---~~~~l~~-~~~~~~~~~w~vi~-~~~S~~~~~~v~~s~d~tv~l~~~~~~~----------~-~~~~~i~~ia~Spn 227 (839)
....+.+ .++......-.+++ +.|. ++..+++++.+|.++......-. . ...+.+..+....+
T Consensus 78 ~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~-~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~ 156 (307)
T 1zi0_A 78 RGARGRPIVNLLPLEQDERITAILPVTEFE-EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSG 156 (307)
T ss_dssp SSSCCEEGGGTSCCCTTCCEEEEEEESCCC-TTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECT
T ss_pred CCCCCeEhhhccCCCCCCEEEEEEEeccCC-CCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCC
Confidence 1222211 11211222222322 2233 34567888889988887665221 1 12244555444444
Q ss_pred CcEEEEeecCCeEEEEe
Q 003205 228 GNFVACFTHDGRLVVNN 244 (839)
Q Consensus 228 g~~iA~~~~~g~i~i~s 244 (839)
.+.|.++|.+|.+..+.
T Consensus 157 ~~~i~l~T~~G~~irf~ 173 (307)
T 1zi0_A 157 EDEVMLFSAEGKVVRFK 173 (307)
T ss_dssp TCEEEEEETTSEEEEEE
T ss_pred CCEEEEECCCCcEEEEE
Confidence 56788888888865554
No 383
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=28.43 E-value=3e+02 Score=24.05 Aligned_cols=82 Identities=12% Similarity=-0.046 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHhCCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C-CH---HHHHHHH
Q 003205 721 EKRWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V-DP---RERAEAY 787 (839)
Q Consensus 721 dkr~~~~kl~ala~~~~w~~L~~f~~~-----KKspIgyepfv~~~~~~~~~~ea~~yI~~i----~-d~---~~r~~~~ 787 (839)
+...+......+...+++++-..+... ...+-.+.-....+...|+.++|..+..++ + +. -....+|
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 120 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHH
Confidence 345667777788889998876655532 223334444667788899999998877654 2 22 4567788
Q ss_pred HHcCCHHHHHHHHHh
Q 003205 788 ARIGMAKEAADAASQ 802 (839)
Q Consensus 788 ~~~~~~~~A~~~a~~ 802 (839)
.+.|++.+|++...+
T Consensus 121 ~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 121 DNLGRFDEAIDSFKI 135 (186)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHH
Confidence 899999999887554
No 384
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=27.99 E-value=1.8e+02 Score=26.28 Aligned_cols=99 Identities=7% Similarity=-0.045 Sum_probs=59.2
Q ss_pred HHHHHHHHHhCCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----CC----HHHHHHHHHHcC
Q 003205 725 YWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----VD----PRERAEAYARIG 791 (839)
Q Consensus 725 ~~~kl~ala~~~~w~~L~~f~~~-----KKspIgyepfv~~~~~~~~~~ea~~yI~~i----~d----~~~r~~~~~~~~ 791 (839)
|+-.-.++.+.|++++-...... ...|-.|.-.-.++...|+.++|..+..+. |+ .-..-..|.+.|
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg 118 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLK 118 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 44445566677777666555431 223333444556777788888876655543 21 166778888999
Q ss_pred CHHHHHHHHHhcCCHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 003205 792 MAKEAADAASQAKDGELLGRLKLTFAQNAAASSIFDTLRDRL 833 (839)
Q Consensus 792 ~~~~A~~~a~~~kd~~~L~~i~~~~~~~~~~~~~i~~~~~~~ 833 (839)
++.+|++...+ ..... .++++.+....+++.+
T Consensus 119 ~~~eA~~~~~~---------al~l~-~~~~~~~~A~~ll~~l 150 (151)
T 3gyz_A 119 APLKAKECFEL---------VIQHS-NDEKLKIKAQSYLDAI 150 (151)
T ss_dssp CHHHHHHHHHH---------HHHHC-CCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH---------HHHhC-CCHHHHHHHHHHHHhh
Confidence 99998865433 22232 3445667777776655
No 385
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=27.99 E-value=4.3e+02 Score=27.78 Aligned_cols=69 Identities=17% Similarity=0.150 Sum_probs=43.4
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEE------ecCCCCCeEEEeecCC----CeEEEE-
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETV------WKNPGGRLIGMSWSED----QTLICV- 104 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~------~~~~~~~I~~~~fs~d----e~Lv~v- 104 (839)
+.+++.|+|.++.+.+ ..+.|.+++..+.....+. ... .+.+.+|+|+|| +.|.+.
T Consensus 35 ~~ia~~pdG~llVter------------~~G~I~~v~~~~g~~~~v~~~~~v~~~g-~~GllGia~~Pdf~~~g~lYv~y 101 (347)
T 3das_A 35 WGLAPLPGGDLLVSSR------------DEATITRVDAKTGRKTELGEVPGVSPSG-EGGLLGIALSPDYASDHMVYAYF 101 (347)
T ss_dssp EEEEECTTSCEEEEET------------TTCEEEEECTTTCCEEEEEECTTCCCBT-TBSEEEEEECTTHHHHCEEEEEE
T ss_pred eEEEEcCCCcEEEEEe------------cCCEEEEEECCCCcEeeecccCceeecC-CCCceeeEeccccccCCEEEEEE
Confidence 5889999998777765 2588888886533323222 111 157899999985 666443
Q ss_pred E--eCCeEEEEeCCC
Q 003205 105 V--QDGTVYRYNIHA 117 (839)
Q Consensus 105 ~--~dGtv~l~~~~G 117 (839)
+ .++.|..|.+.+
T Consensus 102 t~~~~~~v~R~~~~~ 116 (347)
T 3das_A 102 TSASDNRIVRMLYDE 116 (347)
T ss_dssp ECSSSEEEEEEEBCT
T ss_pred ecCCCCEEEEEEeCC
Confidence 2 344555566554
No 386
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=27.87 E-value=1.9e+02 Score=25.69 Aligned_cols=77 Identities=10% Similarity=0.042 Sum_probs=44.9
Q ss_pred HHHHHHHHHhCCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C-CH---HHHHHHHHHcC
Q 003205 725 YWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V-DP---RERAEAYARIG 791 (839)
Q Consensus 725 ~~~kl~ala~~~~w~~L~~f~~~-----KKspIgyepfv~~~~~~~~~~ea~~yI~~i----~-d~---~~r~~~~~~~~ 791 (839)
++-.-..+.+.|+|++-...... ...|-.|.-...++...|+.++|..+..+. | ++ -.....|...|
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 103 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXG 103 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 44445566667777665444421 122333333445667777777776655543 2 11 55677888889
Q ss_pred CHHHHHHHHH
Q 003205 792 MAKEAADAAS 801 (839)
Q Consensus 792 ~~~~A~~~a~ 801 (839)
++.+|++...
T Consensus 104 ~~~~A~~~~~ 113 (148)
T 2vgx_A 104 ELAEAESGLF 113 (148)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9988886543
No 387
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=27.76 E-value=6.9e+02 Score=28.07 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=33.0
Q ss_pred eEEEEcC-CCCceeEEEecCCCCCe-------EEEeecCCCeEEEEEeCCeEEEEeC-CCCc
Q 003205 67 KLRIFNS-AGVLISETVWKNPGGRL-------IGMSWSEDQTLICVVQDGTVYRYNI-HAEL 119 (839)
Q Consensus 67 ~I~iy~~-~G~ll~ti~~~~~~~~I-------~~~~fs~de~Lv~v~~dGtv~l~~~-~G~~ 119 (839)
.|.-++. +|+++++.......... .++.. .++.+++.+.||.+.-+|. .|+.
T Consensus 79 ~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~-~~~~v~~~t~dg~l~AlD~~TG~~ 139 (582)
T 1flg_A 79 RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI-YGDKVFFGTLDASVVALNKNTGKV 139 (582)
T ss_dssp EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE-ETTEEEEEETTTEEEEEESSSCCE
T ss_pred CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE-ECCEEEEEeCCCEEEEEECCCCCE
Confidence 3777785 89999998765421100 11111 2667778888888887875 6876
No 388
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=27.65 E-value=4.4e+02 Score=25.77 Aligned_cols=18 Identities=17% Similarity=0.060 Sum_probs=8.7
Q ss_pred HHHHHHhcCCHHHHHHhh
Q 003205 757 FVEACVDADEKGEALKYI 774 (839)
Q Consensus 757 fv~~~~~~~~~~ea~~yI 774 (839)
...++...|+.++|..++
T Consensus 199 l~~~~~~~~~~~~A~~~~ 216 (330)
T 3hym_B 199 VGVVAFQNGEWKTAEKWF 216 (330)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHH
Confidence 344445555555554443
No 389
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=27.65 E-value=1.2e+02 Score=26.10 Aligned_cols=64 Identities=14% Similarity=-0.037 Sum_probs=37.0
Q ss_pred chHHHHHHHhcCCHHHHHHhhccC----CC----HHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHHhcCChhHHHH
Q 003205 754 YRPFVEACVDADEKGEALKYIPKL----VD----PRERAEAYARIGMAKEAADAASQAKDGELLGRLKLTFAQNAAASSI 825 (839)
Q Consensus 754 yepfv~~~~~~~~~~ea~~yI~~i----~d----~~~r~~~~~~~~~~~~A~~~a~~~kd~~~L~~i~~~~~~~~~~~~~ 825 (839)
|--...++.+.|+.++|..+..++ ++ .-.+...|.+.|++.+|++...+ ....-|++..+...
T Consensus 50 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~---------al~l~P~~~~a~~~ 120 (126)
T 4gco_A 50 YSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYED---------ALQVDPSNEEAREG 120 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------HHHHCTTCHHHHHH
T ss_pred HHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHH---------HHHHCcCCHHHHHH
Confidence 333445556666666665554442 11 15677788899999998865433 33344777655443
Q ss_pred H
Q 003205 826 F 826 (839)
Q Consensus 826 i 826 (839)
+
T Consensus 121 l 121 (126)
T 4gco_A 121 V 121 (126)
T ss_dssp H
T ss_pred H
Confidence 3
No 390
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=27.45 E-value=1.5e+02 Score=27.48 Aligned_cols=46 Identities=13% Similarity=0.111 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCHHHHHHhhccC----C-CH---HHHHHHHHHcCCHHHHHHHHH
Q 003205 756 PFVEACVDADEKGEALKYIPKL----V-DP---RERAEAYARIGMAKEAADAAS 801 (839)
Q Consensus 756 pfv~~~~~~~~~~ea~~yI~~i----~-d~---~~r~~~~~~~~~~~~A~~~a~ 801 (839)
-...++...|+.++|..+..++ + +. -.+...|...|++.+|++...
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3455667778888887766654 1 11 456777888888888876543
No 391
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=27.20 E-value=3.8e+02 Score=24.90 Aligned_cols=76 Identities=9% Similarity=0.047 Sum_probs=40.5
Q ss_pred HHHcCCcchHHhHHhH-cCC--ChHHHHHHHHHHHHhCCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHH
Q 003205 701 CIVLGNHRAAMKVKTE-FKV--SEKRWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALK 772 (839)
Q Consensus 701 l~~~~~~k~a~~l~k~-fkv--sdkr~~~~kl~ala~~~~w~~L~~f~~~-----KKspIgyepfv~~~~~~~~~~ea~~ 772 (839)
+...|+.+.|.+.-++ .++ .+...|......+.+.++|++-..+... ...+-.+.-...++.+.|+.++|..
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 3445665555443222 111 2345566666677777777665554431 2233334445556667777777766
Q ss_pred hhcc
Q 003205 773 YIPK 776 (839)
Q Consensus 773 yI~~ 776 (839)
++.+
T Consensus 181 ~~~~ 184 (243)
T 2q7f_A 181 QFAA 184 (243)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 392
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=26.97 E-value=4.8e+02 Score=25.98 Aligned_cols=137 Identities=12% Similarity=0.050 Sum_probs=76.1
Q ss_pred EEEEEeCCeEEEEeCCCCc-cccCCCCCccccccCeEEEEEEC--CeEEEEecCCeEEEEe--cCCC--ceEEEcCC-CC
Q 003205 101 LICVVQDGTVYRYNIHAEL-IEPNASMGKECFEENVVECVFWG--NGVVCVTEANRYFCMA--DFAT--MKVCELAR-PE 172 (839)
Q Consensus 101 Lv~v~~dGtv~l~~~~G~~-~~~~~g~~~~~~~~~V~~~~~~~--~G~v~~t~~~~~~~v~--~~~~--~~~~~l~~-~~ 172 (839)
.++++.+|.|+.-..++-- ....+.. .+.+..+.... +-++++|..|+.|.+. .+.. .....+.. .+
T Consensus 5 ~v~lT~~G~iKr~~~~~~~~~~~~lke-----~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~ 79 (256)
T 1zvt_A 5 TIVLSQMGWVRSAKGHDIDAPGLNYKA-----GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLT 79 (256)
T ss_dssp EEEEETTSEEEEEESSCCCSTTSCCCT-----TCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCC
T ss_pred EEEEeCCCEEEEeeCCcCCceeccCCC-----CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeec
Confidence 5789999999877655421 1112222 44566554432 6788999999988775 3311 11222211 12
Q ss_pred CCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----------cc-cCCCceEEEEC-CCCcEEEEeecCCeE
Q 003205 173 VEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----------KV-DDTLSQKMAVS-PNGNFVACFTHDGRL 240 (839)
Q Consensus 173 ~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----------~~-~~~~i~~ia~S-png~~iA~~~~~g~i 240 (839)
+......-.+++. .++..+++++.+|.++....+.-. .. ..+.+..+... .+++.|++.|.+|.+
T Consensus 80 L~~~e~Iv~~~~~---~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~ 156 (256)
T 1zvt_A 80 LPPGATVDHMLME---SDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRM 156 (256)
T ss_dssp CCTTCCEEEEECC---CTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEE
T ss_pred CCCCCEEEEEEEe---CCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeE
Confidence 2222222333332 145567788888988888765321 11 23345554444 345678888888886
Q ss_pred EEEec
Q 003205 241 VVNNT 245 (839)
Q Consensus 241 ~i~ss 245 (839)
..+..
T Consensus 157 lrf~~ 161 (256)
T 1zvt_A 157 LMFPV 161 (256)
T ss_dssp EEEEG
T ss_pred EEEEH
Confidence 66553
No 393
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=26.89 E-value=1.9e+02 Score=26.53 Aligned_cols=62 Identities=13% Similarity=0.038 Sum_probs=46.4
Q ss_pred hccCCCHHHHHHHHHHcCC----HHHHHHHHHhcCCHHHHHHHHHHh-cCC---hhHHHHHHHHHHHhhh
Q 003205 774 IPKLVDPRERAEAYARIGM----AKEAADAASQAKDGELLGRLKLTF-AQN---AAASSIFDTLRDRLSF 835 (839)
Q Consensus 774 I~~i~d~~~r~~~~~~~~~----~~~A~~~a~~~kd~~~L~~i~~~~-~~~---~~~~~~i~~~~~~~~~ 835 (839)
|.+|.+..+-++.|++.+- ...|.+..+.++..+.|+.|..-+ .++ +++.-+|.....+++.
T Consensus 71 is~C~NlKrVi~C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~ 140 (172)
T 1wy6_A 71 LDKCQNLKSVVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGD 140 (172)
T ss_dssp GGGCSCTHHHHHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTC
T ss_pred cHhhhcHHHHHHHHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcc
Confidence 6688888999999999987 566888889999999999999884 444 4555566655555543
No 394
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=26.82 E-value=1.2e+02 Score=28.74 Aligned_cols=46 Identities=11% Similarity=0.030 Sum_probs=26.4
Q ss_pred HHHHcCCcchHHhHHhH-cCC--ChHHHHHHHHHHHHhCCChhHHHHhh
Q 003205 700 TCIVLGNHRAAMKVKTE-FKV--SEKRWYWLKVFALATKRDWDALERFS 745 (839)
Q Consensus 700 ~l~~~~~~k~a~~l~k~-fkv--sdkr~~~~kl~ala~~~~w~~L~~f~ 745 (839)
.+...|+.+.|...-++ .++ .+...+......+.+.+++++-....
T Consensus 134 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 134 VLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34456666655544322 222 34556777777777888887665444
No 395
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=26.60 E-value=6.1e+02 Score=27.07 Aligned_cols=80 Identities=15% Similarity=0.066 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhCCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----CC----HHHHHHHHH
Q 003205 722 KRWYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----VD----PRERAEAYA 788 (839)
Q Consensus 722 kr~~~~kl~ala~~~~w~~L~~f~~~-----KKspIgyepfv~~~~~~~~~~ea~~yI~~i----~d----~~~r~~~~~ 788 (839)
-..|...-..+...++|++-...... ...+..|.-...++...|+.++|..+..++ ++ ......+|.
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 355 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34566666667777787766555431 234444555666777778888777665543 11 145667777
Q ss_pred HcCCHHHHHHHHH
Q 003205 789 RIGMAKEAADAAS 801 (839)
Q Consensus 789 ~~~~~~~A~~~a~ 801 (839)
+.|++.+|++...
T Consensus 356 ~~g~~~~A~~~~~ 368 (537)
T 3fp2_A 356 KQGKFTESEAFFN 368 (537)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 8888888876653
No 396
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=26.54 E-value=2.2e+02 Score=23.22 Aligned_cols=98 Identities=8% Similarity=-0.008 Sum_probs=46.6
Q ss_pred HHHHHHhCCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccCCCH---------------HHHHHHH
Q 003205 728 KVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKLVDP---------------RERAEAY 787 (839)
Q Consensus 728 kl~ala~~~~w~~L~~f~~~-----KKspIgyepfv~~~~~~~~~~ea~~yI~~i~d~---------------~~r~~~~ 787 (839)
.-..+...++|++-..+... ...+..+.-...++...|+.++|..+..++-+. -....+|
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 89 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHH
Confidence 33444555555554433321 122222333445555666666666555543211 2344556
Q ss_pred HHcCCHHHHHHHHHhcCCHHHHHHHHHHhcCChhHHHHHHHHHHHhhh
Q 003205 788 ARIGMAKEAADAASQAKDGELLGRLKLTFAQNAAASSIFDTLRDRLSF 835 (839)
Q Consensus 788 ~~~~~~~~A~~~a~~~kd~~~L~~i~~~~~~~~~~~~~i~~~~~~~~~ 835 (839)
.+.|++.+|++... ......| +......+..+...+..
T Consensus 90 ~~~~~~~~A~~~~~---------~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 90 FKEEKYKDAIHFYN---------KSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHTTCHHHHHHHHH---------HHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHH---------HHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 67777777765432 2222223 44454555555555543
No 397
>1pul_A Hypothetical protein C32E8.3 in chromosome I; alpha helical, northeast structural genomics consortium, PSI, protein structure initiative; NMR {Caenorhabditis elegans} SCOP: a.39.1.11
Probab=26.07 E-value=2.3e+02 Score=25.33 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=33.9
Q ss_pred cCCH-HHHHHHHHHhchhcccccccChhHHHHHhhhhhhhh
Q 003205 380 EFDI-SRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLN 419 (839)
Q Consensus 380 e~d~-~~Qk~LL~AAsfGk~f~~~~~~~~fv~~c~~LRvLn 419 (839)
-|+. +.+.....-|+||+.--...+...|+.+|+...|++
T Consensus 18 ~~~~~~L~~~F~~Fa~fG~~~~~~M~~k~f~K~~kD~~lid 58 (125)
T 1pul_A 18 NWDDADVKKRWDAFTKFGAATATEMTGKNFDKWLKDAGVLD 58 (125)
T ss_dssp CCCHHHHHHHHHHHHHHTCSSSSCCCHHHHHHHHHHHTSCC
T ss_pred CccHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHCCCCC
Confidence 3454 677789999999998778889999999999999984
No 398
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=25.46 E-value=7.3e+02 Score=28.86 Aligned_cols=141 Identities=11% Similarity=0.042 Sum_probs=73.0
Q ss_pred CCCe-EEEEEeCCeEEEEeCCCCc-cccCCCCCccccccCeEEEEE--ECCeEEEEecCCeEEEEecCCCce----EEEc
Q 003205 97 EDQT-LICVVQDGTVYRYNIHAEL-IEPNASMGKECFEENVVECVF--WGNGVVCVTEANRYFCMADFATMK----VCEL 168 (839)
Q Consensus 97 ~de~-Lv~v~~dGtv~l~~~~G~~-~~~~~g~~~~~~~~~V~~~~~--~~~G~v~~t~~~~~~~v~~~~~~~----~~~l 168 (839)
++|. .|+++.+|-|+.-.-.|.- ....+.. .+.|...-. ..+-+.++|..|++|.+.-.+=|. ...+
T Consensus 470 ~~e~v~v~ls~~GyiKr~~g~~~~~~~~~~k~-----~D~~~~~~~~~t~d~ll~ft~~Gr~y~~~~~~lP~~~~~G~~i 544 (716)
T 1zvu_A 470 PSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKA-----GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPL 544 (716)
T ss_dssp CCCCCCEEEETTTEEEECCC--------------------CCEEECCCSSSCEEEEETTSEEEEECTTTSCCCC---CBS
T ss_pred CCceEEEEEecCCeEeccCCCCcCccccccCC-----CCeEEEEEEecCCCEEEEEecCCcEEEEEeeecccccccCeeH
Confidence 5666 4899999988753222210 1111111 222322111 238888999999999876544232 1222
Q ss_pred CC-CCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc----------c-ccCCCceEEEEC-CCCcEEEEee
Q 003205 169 AR-PEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----------K-VDDTLSQKMAVS-PNGNFVACFT 235 (839)
Q Consensus 169 ~~-~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~----------~-~~~~~i~~ia~S-png~~iA~~~ 235 (839)
.+ .++......-++++.. ++..+++++.+|.++......-. . .....+..+... ..+..|+++|
T Consensus 545 ~~ll~l~~~e~i~~~~~~~---~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t 621 (716)
T 1zvu_A 545 TGKLTLPPGATVDHMLMES---DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAIT 621 (716)
T ss_dssp TTTSCCCTTCCEEEEECCC---TTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEE
T ss_pred HhccCCCCCCeEEEEEEec---CCceEEEEeCCceEEEecHHHhcccCccceEEEeeCCCCEEEEEEEecCCCCEEEEEe
Confidence 21 1122223333444432 45677888889988887765332 1 123344444444 3345788888
Q ss_pred cCCeEEEEec
Q 003205 236 HDGRLVVNNT 245 (839)
Q Consensus 236 ~~g~i~i~ss 245 (839)
.+|....++.
T Consensus 622 ~~g~~lrf~~ 631 (716)
T 1zvu_A 622 QAGRMLMFPV 631 (716)
T ss_dssp TTSEEEEEES
T ss_pred CCCeEEEEEH
Confidence 8888766654
No 399
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=25.18 E-value=2.5e+02 Score=30.29 Aligned_cols=168 Identities=10% Similarity=0.093 Sum_probs=91.4
Q ss_pred ChhhHHHHHH--hhhhHHHHHHHHHHHccccCCHHHHHHHHHHhchhcccc-c------------------------ccC
Q 003205 352 SAKADENLRL--IRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFC-S------------------------NFQ 404 (839)
Q Consensus 352 ~~~a~e~lr~--i~~~L~~AV~~CI~AA~~e~d~~~Qk~LL~AAsfGk~f~-~------------------------~~~ 404 (839)
++.+++.|+. +..+++.||+-|++.=. +...||=|..=|...+ . .-|
T Consensus 143 ~~~~d~~I~~aLl~Gd~e~AV~~cl~~~r------~adAllLA~~gg~el~~~~vq~~Y~~k~~~~~~~~rll~~iv~~n 216 (399)
T 2pm7_A 143 SGNIEQTISKNLVSGNIKSAVKNSLENDL------MMEAMVIALDSNNERLKESVKNAYFAKYGSKSSLSRILYSISKRE 216 (399)
T ss_dssp CSHHHHHHHHHHHTTCHHHHHHHHHTTTC------HHHHHHHHTTCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHTTC
T ss_pred ChhHHHHHHHHHHcCCHHHHHHHHHHCCC------hHHHHHHHHhcCHHHHHHHHHHHHHHhcccCchHHHHHHHHHccC
Confidence 4566666643 46799999999996421 2233333333333222 1 123
Q ss_pred hhHHHHHhhhhhhhhccCCCCCcccccHH-----HHHhCChHHHHHHHHHcCChHHHHHHHHHhCCChhhHHHHhHhh--
Q 003205 405 RDRIQEMCKTLRVLNAARDPEIGIPLSIQ-----QYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACS-- 477 (839)
Q Consensus 405 ~~~fv~~c~~LRvLn~lr~~~igi~lT~~-----Q~~~l~~~~li~rL~~r~~~~lA~~I~~~l~~~~~~I~~~WA~~-- 477 (839)
...+|..|. |...|. -+++-+||. +|..| -+.|=+||...+.. .+-.+|-...-+.+++..-|...
T Consensus 217 ~~d~V~~~~----l~~WkE-~La~i~t~a~~e~~ef~~L-c~~LG~RL~~~g~~-~~A~lCYi~Ag~~dk~v~iW~~~~~ 289 (399)
T 2pm7_A 217 VDDLVENLD----VSQWKF-ISKAIQNLYPNDIAQRNEM-MIKLGDRMKENGHR-QDSLTLYLAAGSLDKVASIWLSEFP 289 (399)
T ss_dssp CHHHHHHBC----GGGHHH-HHHHHHHHCTTCHHHHHHH-HHHHHHHHHTTTCH-HHHHHHHHHHTCHHHHHHHHHHSHH
T ss_pred HHHHHhcCC----hhhHHH-HHHHHHhcCCccHhHHHHH-HHHHHHHHHhCCCh-hhhhHHHHhhCCHHHHHHHHHHhcc
Confidence 334444442 222222 234445554 33333 25677899988766 77779999999999999999752
Q ss_pred ----hhhhcCCCC----hHHHHHHHHHHhc---cC----CCC-------CHHHHHHHHHHhCcHHHHHHHHhcCCCCC
Q 003205 478 ----KITASLAIP----DVTLLEILLDKLK---LC----KGI-------SYAAVAAHADKSGRRKLAAMLVEHEPRSS 533 (839)
Q Consensus 478 ----kI~~~~~~~----D~~l~~~I~~kl~---~~----~~i-------s~~~IA~~A~~~gR~~LA~~Ll~~E~~~~ 533 (839)
++.. .+.+ .-..++..++|.. .. +++ -|.+=|......|+...|.+.|+.=|...
T Consensus 290 ~~~~~~~~-~~~s~~~~~~~~Lqe~iEkv~vl~~a~~~~~~~~~~~l~~~~~eYA~lLA~qG~l~~A~~yL~~lp~~~ 366 (399)
T 2pm7_A 290 DLEDKLKK-DNKTIYEAHSECMTEFIERFTVFSNFINGSSTINNEQLIAKFLEFINLTTSTGNFELATEFLNSLPSDN 366 (399)
T ss_dssp HHHHHHHH-TTCCHHHHHHHHHHHHHHHHHHHHTTSCC---CCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHSCTTC
T ss_pred hhhhcccc-ccCCcccccHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 1100 0001 1112333334432 11 111 13344666677899999999988766544
No 400
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.08 E-value=1.5e+02 Score=25.29 Aligned_cols=62 Identities=15% Similarity=0.080 Sum_probs=33.9
Q ss_pred HHHHHHhcCCHHHHHHhhccC----C-CH---HHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHHhcCChhHHHHHH
Q 003205 757 FVEACVDADEKGEALKYIPKL----V-DP---RERAEAYARIGMAKEAADAASQAKDGELLGRLKLTFAQNAAASSIFD 827 (839)
Q Consensus 757 fv~~~~~~~~~~ea~~yI~~i----~-d~---~~r~~~~~~~~~~~~A~~~a~~~kd~~~L~~i~~~~~~~~~~~~~i~ 827 (839)
...++...|+.++|..+..+. + +. -.+..+|...|++.+|++.. ......-|++..+...+.
T Consensus 71 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~---------~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 71 RAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDL---------QRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHH---------HHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHH---------HHHHHcCCCcHHHHHHHH
Confidence 344455566666655444332 1 11 45667788888888887654 333444466654433333
No 401
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=24.99 E-value=1.1e+02 Score=27.38 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=46.9
Q ss_pred HHHHhCCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C-CH---HHHHHHHHHcCCHHHH
Q 003205 730 FALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V-DP---RERAEAYARIGMAKEA 796 (839)
Q Consensus 730 ~ala~~~~w~~L~~f~~~-----KKspIgyepfv~~~~~~~~~~ea~~yI~~i----~-d~---~~r~~~~~~~~~~~~A 796 (839)
+.+.+.++|++-..+.+. .+.|-.|.-...+..+.|+.++|..+..++ | ++ -....+|.+.|.+.+|
T Consensus 39 ~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a 118 (150)
T 4ga2_A 39 KLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGR 118 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Confidence 344555555554433321 233444444555666667777766555443 2 11 3445566677777666
Q ss_pred HHHHHhcCCHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003205 797 ADAASQAKDGELLGRLKLTFAQNAAASSIFDTLRD 831 (839)
Q Consensus 797 ~~~a~~~kd~~~L~~i~~~~~~~~~~~~~i~~~~~ 831 (839)
++.. ++.....-|++..+.....+++.
T Consensus 119 a~~~--------~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 119 AKYW--------VERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp HHHH--------HHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHH--------HHHHHHhCcCCHHHHHHHHHHHH
Confidence 6543 22233334666655444444443
No 402
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=24.36 E-value=6.1e+02 Score=26.23 Aligned_cols=240 Identities=11% Similarity=0.082 Sum_probs=120.5
Q ss_pred CCeEEEeecC-CCeEEEEEeCCeEEEEeCC----------CCccccCCCCCccccccCeEEEEEEC----C-eEEEEecC
Q 003205 88 GRLIGMSWSE-DQTLICVVQDGTVYRYNIH----------AELIEPNASMGKECFEENVVECVFWG----N-GVVCVTEA 151 (839)
Q Consensus 88 ~~I~~~~fs~-de~Lv~v~~dGtv~l~~~~----------G~~~~~~~g~~~~~~~~~V~~~~~~~----~-G~v~~t~~ 151 (839)
+.+..+.-+. .++++++++.|.++-+... |......+.-. + .+.|..+-.-+ + -++++|.+
T Consensus 39 D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~--~e~Iv~~~~~~~~~~~~~ll~~T~~ 115 (323)
T 1wp5_A 39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-R--DEEIIKAIPINDFELNGYFLFVTRN 115 (323)
T ss_dssp CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-T--TCCEEEEEEESCTTSSCEEEEEETT
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-C--CCEEEEEEEecccCCCceEEEEeCC
Confidence 5666555554 5568999999987765321 32211111111 1 44566554333 2 37788888
Q ss_pred CeEEEEe--cCCCce-EEEcCCCCCCCCCc-eEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc------------cc-
Q 003205 152 NRYFCMA--DFATMK-VCELARPEVEELPH-CVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------------KV- 214 (839)
Q Consensus 152 ~~~~~v~--~~~~~~-~~~l~~~~~~~~~~-~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~------------~~- 214 (839)
|.+..+. .+...+ ..-+....+..... .+.... .+.+.+++++.+|.++.+..+... ..
T Consensus 116 G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~----~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~ 191 (323)
T 1wp5_A 116 GMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLT----DGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK 191 (323)
T ss_dssp SEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEE----CSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC
T ss_pred CeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEe----CCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC
Confidence 8765553 332211 00010111211222 122211 144567778888888888766332 11
Q ss_pred cCCCceEEEECCCCc-EEEEeecCCeEEEEecCCCCccccccCCCC--CCCCceeee-cCc-eEE--EEe--cCEEEEEc
Q 003205 215 DDTLSQKMAVSPNGN-FVACFTHDGRLVVNNTNFSSPVIDESCESA--LPPEQIAWC-GMD-SVL--LYW--NDMLVMVA 285 (839)
Q Consensus 215 ~~~~i~~ia~Spng~-~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~--~~p~~~~Wc-G~d-~vv--~~~--~~~l~lig 285 (839)
....+..+.+-+++. .+.+.|..|..+....+ +|..... .....+... .++ .++ ..+ ++++.+++
T Consensus 192 ~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~------e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it 265 (323)
T 1wp5_A 192 EGDYIVSGQLITSKDESIVVATQRGAVKKMKLT------EFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQT 265 (323)
T ss_dssp TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGG------GSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEE
T ss_pred CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHH------HccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEe
Confidence 223355554333344 67777777776554322 3322110 001111111 122 233 233 35788999
Q ss_pred CCCCceEeccCCCeEEeecCCceEEEccCcceeeeccchhhHhhhccCCCChhhhHHHHHHH
Q 003205 286 PQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDH 347 (839)
Q Consensus 286 ~~~~~v~f~~~~~~~l~~E~DGvRIit~~~~~~l~~Vp~~~~~vf~igS~~pga~L~~A~~~ 347 (839)
..|..+.+..+.....-----|+|++..+..+-+. .+..+....-+..+..|.+.
T Consensus 266 ~~g~~ir~~~~~i~~~~R~t~Gv~l~~~~~~~~v~-------~~~~~~~~~~~~~~~~~~~~ 320 (323)
T 1wp5_A 266 EKSFIETIKVGDIRFSDRYSNGSFVLDEEENGRVI-------SVWKVEAEDKTEKLAAALEH 320 (323)
T ss_dssp TTSCEEEEEGGGSCBCCSSSCCEESSCHHHHCCEE-------EEEEECSSCHHHHHHHHHHH
T ss_pred CCCeEEEEEhhhcCccCccCCCeEEEEcCCCCEEE-------EEEEecCcccchhHHHHHhh
Confidence 99988888776554433334578877765444332 23345556667888887764
No 403
>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}
Probab=24.18 E-value=43 Score=30.48 Aligned_cols=33 Identities=6% Similarity=0.288 Sum_probs=25.2
Q ss_pred CceEEEEcCCCCceeEEEecCCCCCeEEEeecC
Q 003205 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSE 97 (839)
Q Consensus 65 ~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~ 97 (839)
.-+|.|+|.+|+++.++.+.....-...|.|..
T Consensus 38 ~v~v~I~d~~G~~V~t~~~g~~~aG~~~f~WDG 70 (138)
T 3osv_A 38 NVWVNVYDDKGTVVNRINLGQQAAGSVSFMWDG 70 (138)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECSEEEEEEECS
T ss_pred EEEEEEEcCCCCEEEEEEcCCcCCceEEEEECC
Confidence 567999999999999998643113467888974
No 404
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=23.91 E-value=2.4e+02 Score=24.58 Aligned_cols=59 Identities=10% Similarity=0.021 Sum_probs=31.7
Q ss_pred cCCCCeEEEEecCchhhhhhcccCCceEEEEcCCCCceeEEEecCCCCCeEEEeecCCCeEEEEEeCCeEEEEe
Q 003205 41 APFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYN 114 (839)
Q Consensus 41 sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~~G~ll~ti~~~~~~~~I~~~~fs~de~Lv~v~~dGtv~l~~ 114 (839)
||+|....... .++.+-+|+. |+.++.-.-.. ++.-..+.+.++|.||+...+|.+ +|.
T Consensus 27 S~~g~~~L~~~------------~dgnlvly~~-~~~vW~sn~~~-~~~~~~l~l~~dGNLVl~d~~~~~-lW~ 85 (119)
T 1b2p_A 27 FGTHVYRFIMQ------------TDCNLVLYDN-NNPIWATNTGG-LGNGCRAVLQPDGVLVVITNENVT-VWQ 85 (119)
T ss_dssp ETTEEEEEEEC------------TTSCEEEEET-TEEEEECCCTT-SCSSCEEEECTTSCEEEECTTCCE-EEE
T ss_pred CCCCCEEEEEe------------cCCCEEEEEC-CEEEEeCCCcc-CCCceEEEEccCCEEEEEeCCCcE-EEc
Confidence 77777665554 3566667775 43333222111 121234566777777766666654 574
No 405
>1u6h_B Talin; protein-protein complex, cell adhesion; 2.38A {Gallus gallus}
Probab=23.90 E-value=15 Score=24.47 Aligned_cols=12 Identities=50% Similarity=0.711 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHh
Q 003205 382 DISRQRTLLRAA 393 (839)
Q Consensus 382 d~~~Qk~LL~AA 393 (839)
||..|++||.||
T Consensus 1 D~~~q~rLl~aa 12 (31)
T 1u6h_B 1 DLENSRKLLSAA 12 (31)
T ss_dssp ----CCHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 678888999887
No 406
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=23.87 E-value=1.1e+03 Score=29.12 Aligned_cols=213 Identities=9% Similarity=0.063 Sum_probs=96.7
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCceEEEEcC-CCCceeEEEecCCCCCeEEEeecCCC------e-EEEEEe-
Q 003205 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQ------T-LICVVQ- 106 (839)
Q Consensus 36 ~~va~sp~Gg~IA~~~d~~k~~~~~~~~~~~~I~iy~~-~G~ll~ti~~~~~~~~I~~~~fs~de------~-Lv~v~~- 106 (839)
.++++|-++..|+++. .+.|.+|.. +|++...-+..- .+.|.+++++|.. . ++++..
T Consensus 515 ~I~~As~n~~~vvva~-------------g~~l~~fel~~~~L~~~~~~~l-~~evscl~i~~~~~~~~~s~~~aVg~~~ 580 (1158)
T 3ei3_A 515 NISVASCNSSQVVVAV-------------GRALYYLQIHPQELRQISHTEM-EHEVACLDITPLGDSNGLSPLCAIGLWT 580 (1158)
T ss_dssp CCCEEEECSSEEEEEE-------------TTEEEEEEEETTEEEEEEEEEC-SSCEEEEECCCCSSSTTCCSEEEEEETT
T ss_pred EEEEEEeCCCEEEEEE-------------CCEEEEEEeeCCceeeecccCC-CCceEEEEeecCCCCcccccEEEEEECC
Confidence 3555555566777764 234545543 254333222222 2789999998632 3 577775
Q ss_pred CCeEEEEeCCC-Cc-cccCCCCCccccccCeEEEEEECCeEE--EEecCCeEEE--EecCCCceEEEcCCCCCCCCCceE
Q 003205 107 DGTVYRYNIHA-EL-IEPNASMGKECFEENVVECVFWGNGVV--CVTEANRYFC--MADFATMKVCELARPEVEELPHCV 180 (839)
Q Consensus 107 dGtv~l~~~~G-~~-~~~~~g~~~~~~~~~V~~~~~~~~G~v--~~t~~~~~~~--v~~~~~~~~~~l~~~~~~~~~~~w 180 (839)
|++|+++++.. +. ....++.+.. ...|.-+.+ +++.. +...+|.+.. ++...+. +..-....++..|...
T Consensus 581 d~tv~I~sL~~l~~~~~~~L~~~~~--p~si~l~~~-~~~~~L~igl~dG~l~~~~~d~~tg~-l~d~r~~~LG~~pv~L 656 (1158)
T 3ei3_A 581 DISARILKLPSFELLHKEMLGGEII--PRSILMTTF-ESSHYLLCALGDGALFYFGLNIETGL-LSDRKKVTLGTQPTVL 656 (1158)
T ss_dssp TTEEEEEETTTCCEEEEEECCSSCC--EEEEEEEEE-TTEEEEEEEETTSEEEEEEECTTTCC-EEEEEEEECCSSCCEE
T ss_pred CCEEEEEECCCCCeEEEEECCCCCC--CcEEEEEEe-CCCcEEEEEeCCCeEEEEEEcCCCCc-cccceeEEcCCCceEE
Confidence 99999998763 11 1222332111 222322222 33332 3334665432 2222211 1000000133334433
Q ss_pred EEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc---cccCCCceEE-EECCC--CcEEEEeecCCeEEEEecCCCCccccc
Q 003205 181 AVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---KVDDTLSQKM-AVSPN--GNFVACFTHDGRLVVNNTNFSSPVIDE 254 (839)
Q Consensus 181 ~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~---~~~~~~i~~i-a~Spn--g~~iA~~~~~g~i~i~ssd~~~~l~e~ 254 (839)
..++. .|..-|++..+....+...++.. .....++..+ .|+.. ..-+++.+ ++++.|..-+--+.+..-
T Consensus 657 ~~~~~----~~~~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~ 731 (1158)
T 3ei3_A 657 RTFRS----LSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIR 731 (1158)
T ss_dssp EEEES----SSCEEEEEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEE
T ss_pred EEEee----CCceeEEEECCCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEE
Confidence 33332 45555666556554444444432 2333333333 34321 12344444 456888875422332211
Q ss_pred cCCCCCCCCceeeecCc
Q 003205 255 SCESALPPEQIAWCGMD 271 (839)
Q Consensus 255 ~~~~~~~p~~~~WcG~d 271 (839)
......+|+.|+..-+.
T Consensus 732 ~ipL~~Tprri~y~~~~ 748 (1158)
T 3ei3_A 732 TVPLYESPRKICYQEVS 748 (1158)
T ss_dssp EEECSSEEEEEEEEGGG
T ss_pred EEeCCCCceEEEEcCCC
Confidence 11223478888888543
No 407
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=23.01 E-value=58 Score=39.93 Aligned_cols=86 Identities=10% Similarity=0.151 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHcCCcchHHhHHhHc-------CCChHHHHHHHHHHHHhCCChhHHHHhhcc------CCCCCCchHHH
Q 003205 692 SSISDTIRTCIVLGNHRAAMKVKTEF-------KVSEKRWYWLKVFALATKRDWDALERFSKE------KRPPIGYRPFV 758 (839)
Q Consensus 692 ~Sl~~ti~~l~~~~~~k~a~~l~k~f-------kvsdkr~~~~kl~ala~~~~w~~L~~f~~~------KKspIgyepfv 758 (839)
.+++..|.-|++.|+.+.|.++-.++ ..|+---|-+.|.+||+.|++++-.++..+ +-..+-|-..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 46677788888889988888875443 357888899999999999999888777743 12456677788
Q ss_pred HHHHhcCCH-HHHHHhhccC
Q 003205 759 EACVDADEK-GEALKYIPKL 777 (839)
Q Consensus 759 ~~~~~~~~~-~ea~~yI~~i 777 (839)
+.+-+.|.. ++|.+++..|
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM 227 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQM 227 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHH
Confidence 877777775 5576666654
No 408
>2a7w_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.80A {Chromobacterium violaceum} SCOP: a.204.1.4
Probab=22.26 E-value=3.6e+02 Score=23.67 Aligned_cols=83 Identities=12% Similarity=0.104 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHHHHhcCCCCCCchhhhhc--cCchHHHHHHHHHcCCchHHHHHH
Q 003205 488 VTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLS--IGEEDTALVKATESGDTDLVYLVI 565 (839)
Q Consensus 488 ~~l~~~I~~kl~~~~~is~~~IA~~A~~~gR~~LA~~Ll~~E~~~~~qV~lLl~--~~~~~~AL~~Ai~S~D~dLI~~vl 565 (839)
++|.+.|.+|-..-|.-||+ ..-++.|-..++.++-+- -+.+.+- -++.+....+ -.||+|.+|
T Consensus 7 ~~L~~~I~~Rk~~~pe~SYT---~~L~~kG~~kI~kKvgEE------A~E~iiAak~~d~~el~~E-----~ADLlYHll 72 (116)
T 2a7w_A 7 KNIADTLEARREAAPQSSYV---ASLFHKGEDAILKKVAEE------AAETLMASKDKDKLHLVRE-----VADLWFHTM 72 (116)
T ss_dssp HHHHHHHHHGGGSCTTTCHH---HHHHHHCHHHHHHHHHHH------HHHHHHHHHTTCHHHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcHH---HHHHHCCHHHHHHHHHHH------HHHHHHHHHhCCHHHHHHH-----HHHHHHHHH
Confidence 67899999999888999998 455677888888876542 1111110 0111111111 256777777
Q ss_pred HHHHh-hCChhHHHHHHhcC
Q 003205 566 FHIWQ-KRPALEFFGMIQTR 584 (839)
Q Consensus 566 l~l~~-~l~~~~f~~~l~~~ 584 (839)
+-|.. .+++++..+.|.+|
T Consensus 73 VlL~~~gv~l~dV~~eL~~R 92 (116)
T 2a7w_A 73 VLLTYHGLRPEDVVMELHRR 92 (116)
T ss_dssp HHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHH
Confidence 65443 36677766666543
No 409
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=21.88 E-value=2.2e+02 Score=25.55 Aligned_cols=78 Identities=15% Similarity=0.002 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhCCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C-CH---HHHHHHHHHc
Q 003205 724 WYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V-DP---RERAEAYARI 790 (839)
Q Consensus 724 ~~~~kl~ala~~~~w~~L~~f~~~-----KKspIgyepfv~~~~~~~~~~ea~~yI~~i----~-d~---~~r~~~~~~~ 790 (839)
.+...-..+...+++++-...... ...+-.+.-...++.+.|+.++|..+..++ | ++ ..+...|.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 75 AYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHC
Confidence 344444455555666555443321 122222233445566677777776555543 1 11 4566778888
Q ss_pred CCHHHHHHHHH
Q 003205 791 GMAKEAADAAS 801 (839)
Q Consensus 791 ~~~~~A~~~a~ 801 (839)
|++.+|++...
T Consensus 155 g~~~~A~~~~~ 165 (184)
T 3vtx_A 155 GLRDEAVKYFK 165 (184)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 88888886643
No 410
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=21.78 E-value=1.5e+02 Score=25.08 Aligned_cols=79 Identities=9% Similarity=-0.077 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----CC-H---HHHHHHHHHc
Q 003205 724 WYWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----VD-P---RERAEAYARI 790 (839)
Q Consensus 724 ~~~~kl~ala~~~~w~~L~~f~~~-----KKspIgyepfv~~~~~~~~~~ea~~yI~~i----~d-~---~~r~~~~~~~ 790 (839)
.|+..-..+.+.++|++-..+... ...+-.|--...++...|+.++|..++.++ ++ + -....+|.+.
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 90 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 90 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 444555556666666655444421 122223333455556667777666555443 11 1 4567778888
Q ss_pred CCHHHHHHHHHh
Q 003205 791 GMAKEAADAASQ 802 (839)
Q Consensus 791 ~~~~~A~~~a~~ 802 (839)
|++.+|++...+
T Consensus 91 ~~~~~A~~~~~~ 102 (137)
T 3q49_B 91 ESYDEAIANLQR 102 (137)
T ss_dssp TCHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 888888766543
No 411
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=21.76 E-value=6.6e+02 Score=25.71 Aligned_cols=162 Identities=12% Similarity=0.180 Sum_probs=85.8
Q ss_pred CCceeEEEecCCCCCeEEEeecCC-CeEEEEEeCCeEEEEeCC----------CCccccCCCCCccccccCeEEEEEE--
Q 003205 75 GVLISETVWKNPGGRLIGMSWSED-QTLICVVQDGTVYRYNIH----------AELIEPNASMGKECFEENVVECVFW-- 141 (839)
Q Consensus 75 G~ll~ti~~~~~~~~I~~~~fs~d-e~Lv~v~~dGtv~l~~~~----------G~~~~~~~g~~~~~~~~~V~~~~~~-- 141 (839)
|+-+..+.... .+.++.+..+.. ++++++++.|.++.+..+ |......+... + .+.|..+-.-
T Consensus 35 ~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~-~--~e~i~~~~~~~~ 110 (312)
T 1suu_A 35 GKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLG-D--QEEILTIKNSKD 110 (312)
T ss_dssp CCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCC-T--TCCEEEEEEESC
T ss_pred CCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCC-C--CCEEEEEEEecc
Confidence 33444455444 256777666654 568999999988766432 22211111111 1 4456655433
Q ss_pred ---CCeEEEEecCCeEEEEe--cCCCce--EEEcCCCCCCCCCceEEEeCCCCCCCCcEEEEEEeCCeEEEEecCCcc--
Q 003205 142 ---GNGVVCVTEANRYFCMA--DFATMK--VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-- 212 (839)
Q Consensus 142 ---~~G~v~~t~~~~~~~v~--~~~~~~--~~~l~~~~~~~~~~~w~vi~~~~S~~~~~~v~~s~d~tv~l~~~~~~~-- 212 (839)
++-++++|.+|.++.+. .+...+ ....- .+......-.+... .+++.+++++.+|.++.+..+...
T Consensus 111 ~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i--~L~~~d~lv~~~~~---~~~~~i~l~T~~G~~~r~~~~ev~~~ 185 (312)
T 1suu_A 111 LTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVI--KLNDKDFVTSAEIV---FKDEKVICLSKKGSAFIFNSRDVRLT 185 (312)
T ss_dssp CCTTCEEEEEETTSEEEEEEGGGGCC----CEECB--CCCTTCCEEEEEEE---CTTCEEEEEETTSEEEEEEGGGSCBC
T ss_pred CCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEE--ecCCCCEEEEEEEe---CCCCEEEEEeCCCcEEEEEHHHcccc
Confidence 24478888899887664 332211 11111 12112221222111 134567778888888888766421
Q ss_pred ----------cc-cCCCceEEEECCCCcEEEEeecCCeEEEEec
Q 003205 213 ----------KV-DDTLSQKMAVSPNGNFVACFTHDGRLVVNNT 245 (839)
Q Consensus 213 ----------~~-~~~~i~~ia~Spng~~iA~~~~~g~i~i~ss 245 (839)
.. ....+..+..-+++..|.+.+.+|.......
T Consensus 186 gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~ 229 (312)
T 1suu_A 186 NRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNM 229 (312)
T ss_dssp CTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEG
T ss_pred CCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEH
Confidence 11 2345666655555677888898888776653
No 412
>1yvw_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; helix bundle, histidine biosynthesis, structural genomics, PSI, protein structure initiative; 2.60A {Bacillus cereus} SCOP: a.204.1.4
Probab=20.86 E-value=3.6e+02 Score=23.61 Aligned_cols=83 Identities=11% Similarity=0.139 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHHHHhcCCCCCCchhhhhc--cCchHHHHHHHHHcCCchHHHHHH
Q 003205 488 VTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLS--IGEEDTALVKATESGDTDLVYLVI 565 (839)
Q Consensus 488 ~~l~~~I~~kl~~~~~is~~~IA~~A~~~gR~~LA~~Ll~~E~~~~~qV~lLl~--~~~~~~AL~~Ai~S~D~dLI~~vl 565 (839)
++|.+.|.+|-...|.-||+ ..-++.|-..++.++-+- -+.+.+- -++.+....+ -.||+|.+|
T Consensus 6 ~~L~~~I~~Rk~~~pe~SYT---~~L~~kG~~kI~kKvgEE------A~E~iiAak~~d~~~l~~E-----~ADLlYHll 71 (115)
T 1yvw_A 6 KLLYKTIEERKGSPLPESYT---NYLFSKGEDKILKKIGEE------CAEVIIACKNNDKEEVVKE-----MVDVFYHCF 71 (115)
T ss_dssp HHHHHHHHHHHHSCCTTSHH---HHHHHHCHHHHHHHHHHH------HHHHHHHHHTTCHHHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcHH---HHHHHCcHHHHHHHHHHH------HHHHHHHHhcCCHHHHHHH-----HHHHHHHHH
Confidence 67899999999888999998 455677888888876542 1111110 0111111111 256777777
Q ss_pred HHHHh-hCChhHHHHHHhcC
Q 003205 566 FHIWQ-KRPALEFFGMIQTR 584 (839)
Q Consensus 566 l~l~~-~l~~~~f~~~l~~~ 584 (839)
+-|.. .+++++..+.|.++
T Consensus 72 VlL~~~gv~l~dV~~eL~~R 91 (115)
T 1yvw_A 72 VLLAEKNIALEDVMREVKER 91 (115)
T ss_dssp HHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHH
Confidence 65443 36677776666543
No 413
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=20.69 E-value=6.3e+02 Score=25.05 Aligned_cols=99 Identities=6% Similarity=0.059 Sum_probs=58.3
Q ss_pred CCcEEEEE-EeCCeEEEEecCCcc---cccCCCceEEEECCCCcEEEEeecCCeEEEEecCCCCccccccCCCC----CC
Q 003205 190 TGSVEVLI-GTDAGILMLDEDGVQ---KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESA----LP 261 (839)
Q Consensus 190 ~~~~~v~~-s~d~tv~l~~~~~~~---~~~~~~i~~ia~Spng~~iA~~~~~g~i~i~ssd~~~~l~e~~~~~~----~~ 261 (839)
+++.+..+ ..++.++++|..... ....+. ....++++|+.+...+.+++|++++..-.+.+........ ..
T Consensus 73 ~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~ 151 (243)
T 3mbr_X 73 WRDRLIQLTWRNHEGFVYDLATLTPRARFRYPG-EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDN 151 (243)
T ss_dssp ETTEEEEEESSSSEEEEEETTTTEEEEEEECSS-CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC-CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccc
Confidence 34444333 348899999987543 111111 2345557887776667778899998765555554443211 23
Q ss_pred CCceeeecCceEEEEe-cCEEEEEcCCCC
Q 003205 262 PEQIAWCGMDSVLLYW-NDMLVMVAPQAE 289 (839)
Q Consensus 262 p~~~~WcG~d~vv~~~-~~~l~lig~~~~ 289 (839)
+..|.|-+..--+-.| .+.|..|-|..-
T Consensus 152 lNeLe~~~G~lyanvw~s~~I~vIDp~tG 180 (243)
T 3mbr_X 152 LNELEWVNGELLANVWLTSRIARIDPASG 180 (243)
T ss_dssp EEEEEEETTEEEEEETTTTEEEEECTTTC
T ss_pred ceeeEEeCCEEEEEECCCCeEEEEECCCC
Confidence 3577887555444456 457888877654
No 414
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=20.07 E-value=5.5e+02 Score=24.73 Aligned_cols=54 Identities=6% Similarity=0.079 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCChhHHHHhhcc-----CC-----CC---CCchHHHHHHHhcCCHHHHHHhhccC
Q 003205 724 WYWLKVFALATKRDWDALERFSKE-----KR-----PP---IGYRPFVEACVDADEKGEALKYIPKL 777 (839)
Q Consensus 724 ~~~~kl~ala~~~~w~~L~~f~~~-----KK-----sp---Igyepfv~~~~~~~~~~ea~~yI~~i 777 (839)
.+...-..+...++|++-..+... ++ .| -.+.-...++...|+.++|..++.++
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555666677777665544421 01 11 11222345556667777776666543
No 415
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=20.06 E-value=96 Score=25.65 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=48.6
Q ss_pred HHHHHHHHHhCCChhHHHHhhcc-----CCCCCCchHHHHHHHhcCCHHHHHHhhccC----C-CH---HHHHHHHHHcC
Q 003205 725 YWLKVFALATKRDWDALERFSKE-----KRPPIGYRPFVEACVDADEKGEALKYIPKL----V-DP---RERAEAYARIG 791 (839)
Q Consensus 725 ~~~kl~ala~~~~w~~L~~f~~~-----KKspIgyepfv~~~~~~~~~~ea~~yI~~i----~-d~---~~r~~~~~~~~ 791 (839)
|......+...+++++-..+... ...+..+--....+...|+.++|..+..++ + +. .....++.+.|
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 34445556666777665544421 223333444567778889999988777654 2 12 45567788889
Q ss_pred CHHHHHHHHHh
Q 003205 792 MAKEAADAASQ 802 (839)
Q Consensus 792 ~~~~A~~~a~~ 802 (839)
++.+|.+...+
T Consensus 84 ~~~~A~~~~~~ 94 (136)
T 2fo7_A 84 DYDEAIEYYQK 94 (136)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99998876543
Done!