Query 003207
Match_columns 839
No_of_seqs 250 out of 768
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 17:10:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003207.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003207hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 97.2 0.017 5.7E-07 63.7 19.5 119 264-389 130-258 (511)
2 3gia_A Uncharacterized protein 96.8 0.0067 2.3E-07 65.6 12.4 105 238-354 98-208 (444)
3 3l1l_A Arginine/agmatine antip 96.5 0.022 7.5E-07 61.5 13.3 82 265-354 126-211 (445)
4 2jln_A MHP1; hydantoin, transp 22.7 4.4E+02 0.015 29.4 11.3 48 337-384 207-272 (501)
5 2bm3_A Type 2 cohesin, scaffol 20.1 27 0.00093 34.5 0.6 12 311-322 44-55 (166)
6 3kcp_B Cellulosome anchoring p 19.6 28 0.00096 34.9 0.6 11 312-322 57-67 (187)
7 2rdd_B UPF0092 membrane protei 13.0 2.3E+02 0.008 21.1 4.1 20 544-563 1-20 (37)
8 3ixz_A Potassium-transporting 12.4 1.9E+03 0.064 26.8 15.2 31 361-391 811-844 (1034)
9 2ljb_A M2 protein, BM2 protein 11.9 61 0.0021 24.4 0.6 19 126-144 11-29 (35)
10 3hbe_X Class IV chitinase CHIA 11.7 42 0.0014 34.2 -0.5 43 359-409 97-144 (204)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=97.17 E-value=0.017 Score=63.67 Aligned_cols=119 Identities=21% Similarity=0.199 Sum_probs=63.5
Q ss_pred ehhhHHHHHHHHHHhhhccccccccchhhH----HHHHHHHHHhhhhhhccccCcccc----eecCHHHHHHHHHhcCcc
Q 003207 264 LVIVSIIILVALFSIQRFGTGKVGFMFAPV----LALWFFSLGSIGLYNLVKYDISVV----RAFNPIYIYLFFKKNGKD 335 (839)
Q Consensus 264 Vv~isv~ILv~LF~iQr~GT~kVG~~FgPI----mllWF~~l~~iGiynI~~~~p~Vl----~AlnP~ya~~ff~~n~~~ 335 (839)
...+++++++++..+.-+|....+++..-. +++-++.+.++|++.+...+|.-+ ..+.|.+ .+..
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 202 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDF-------SKVG 202 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCT-------TSTT
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCc-------ccch
Confidence 556788888889999999998877654322 222344455667665554333211 1122210 1234
Q ss_pred hhhhhhhhHHHhhchhhhhcCCCCCC--ccchhhhhHHhHHHHHHHhhcchhhHhh
Q 003207 336 AWSALGGCVLCITGAEAMFADLGHFS--VKAIQIAFTLVVFPCLLLAYMGQAAYLM 389 (839)
Q Consensus 336 g~~~LG~VvL~iTGaEALyADlGHFg--~~~Iqiaw~~~V~PaLlL~Y~GQgA~Ll 389 (839)
.|..+..++.+.+|-|+.-.=-+-.- +|.|..+-..-+.-+.++-.+..-+++.
T Consensus 203 ~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~ 258 (511)
T 4djk_A 203 TLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAM 258 (511)
T ss_dssp TTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHe
Confidence 67778889999999998644333332 4555555444333333333333333333
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=96.84 E-value=0.0067 Score=65.60 Aligned_cols=105 Identities=18% Similarity=0.117 Sum_probs=56.0
Q ss_pred ccccchhhhhhcccccccccCCCCc-eehhhHHHHHHHHHHhhhcccccccc---chhhHHHHHHHHHHhhhhhhccccC
Q 003207 238 ILTPAISVMSAVSGLQGEIHGFGES-ALVIVSIIILVALFSIQRFGTGKVGF---MFAPVLALWFFSLGSIGLYNLVKYD 313 (839)
Q Consensus 238 viTPAISVLSAVeGL~v~~p~l~~~-~Vv~isv~ILv~LF~iQr~GT~kVG~---~FgPImllWF~~l~~iGiynI~~~~ 313 (839)
+++.|....+..+-+....|...++ +...+++++++++..+.-+|....++ .+..+.++=++.+.+.|+... +
T Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~ 174 (444)
T 3gia_A 98 VISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---H 174 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---C
Confidence 3444544444444333323332222 23467788888888999999877665 444444444444445555543 3
Q ss_pred ccccee-cCHHHHHHHHHhcCcc-hhhhhhhhHHHhhchhhhh
Q 003207 314 ISVVRA-FNPIYIYLFFKKNGKD-AWSALGGCVLCITGAEAMF 354 (839)
Q Consensus 314 p~Vl~A-lnP~ya~~ff~~n~~~-g~~~LG~VvL~iTGaEALy 354 (839)
|+-+.. ++|. +.. -+..+..++.+.+|-|+.-
T Consensus 175 ~~~~~~~~~~~---------g~~~~~~~~~~~~~a~~G~e~~~ 208 (444)
T 3gia_A 175 PSYVIPDLAPS---------AVSGMIFASAIFFLSYMGFGVIT 208 (444)
T ss_dssp GGGTSCCCSHH---------HHHHHHHHHHHGGGGGTHHHHHH
T ss_pred hhhcCCCCCCc---------chHHHHHHHHHHHHHHHhHHHHH
Confidence 443332 3332 111 2233444567888999763
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=96.48 E-value=0.022 Score=61.48 Aligned_cols=82 Identities=12% Similarity=0.119 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHHhhhccccccccc---hhhHHHHHHHHHHhhhhhhccccCcccc-eecCHHHHHHHHHhcCcchhhhh
Q 003207 265 VIVSIIILVALFSIQRFGTGKVGFM---FAPVLALWFFSLGSIGLYNLVKYDISVV-RAFNPIYIYLFFKKNGKDAWSAL 340 (839)
Q Consensus 265 v~isv~ILv~LF~iQr~GT~kVG~~---FgPImllWF~~l~~iGiynI~~~~p~Vl-~AlnP~ya~~ff~~n~~~g~~~L 340 (839)
..+++++++++..+--+|....+++ +.++.++=++.+.+.|+.+ .+++.+ ..++|.-.- ....-+..+
T Consensus 126 ~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~-----~~~~~~~~~ 197 (445)
T 3l1l_A 126 TITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFW---FRGETYMAAWNVSGLG-----TFGAIQSTL 197 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTSTT---CCCCCCCCC----------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hChhhcccccCccCCc-----cHHHHHHHH
Confidence 4567777777888888898777764 4444443333334444433 345443 345553110 011223445
Q ss_pred hhhHHHhhchhhhh
Q 003207 341 GGCVLCITGAEAMF 354 (839)
Q Consensus 341 G~VvL~iTGaEALy 354 (839)
..++.+.+|-|+.-
T Consensus 198 ~~~~~af~G~e~~~ 211 (445)
T 3l1l_A 198 NVTLWSFIGVESAS 211 (445)
T ss_dssp HHHHHTTTTTTHHH
T ss_pred HHHHHHHHhHHHHH
Confidence 56677888988653
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=22.65 E-value=4.4e+02 Score=29.40 Aligned_cols=48 Identities=8% Similarity=0.101 Sum_probs=26.8
Q ss_pred hhhhhhhHHHhhchh---hhhcCCCCCCccchh------------h---hhHHhHHHHHHHhhcch
Q 003207 337 WSALGGCVLCITGAE---AMFADLGHFSVKAIQ------------I---AFTLVVFPCLLLAYMGQ 384 (839)
Q Consensus 337 ~~~LG~VvL~iTGaE---ALyADlGHFg~~~Iq------------i---aw~~~V~PaLlL~Y~GQ 384 (839)
|..+.++.+++...= ..-+|...|.+++-. . +++....|.+++.-+|=
T Consensus 207 ~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~ 272 (501)
T 2jln_A 207 MPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGA 272 (501)
T ss_dssp SCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccccCCCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 434455555443322 447899998876654 2 33345566666655554
No 5
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=20.07 E-value=27 Score=34.51 Aligned_cols=12 Identities=42% Similarity=0.670 Sum_probs=6.8
Q ss_pred ccCcccceecCH
Q 003207 311 KYDISVVRAFNP 322 (839)
Q Consensus 311 ~~~p~Vl~AlnP 322 (839)
+|||+||+|.||
T Consensus 44 KYDP~VLqaVn~ 55 (166)
T 2bm3_A 44 VYDPKVLMAVDP 55 (166)
T ss_dssp ECCTTTEEEECT
T ss_pred EECccceEeecC
Confidence 455555555555
No 6
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=19.57 E-value=28 Score=34.86 Aligned_cols=11 Identities=45% Similarity=0.782 Sum_probs=4.8
Q ss_pred cCcccceecCH
Q 003207 312 YDISVVRAFNP 322 (839)
Q Consensus 312 ~~p~Vl~AlnP 322 (839)
|||+||+|+||
T Consensus 57 YDP~VLqaV~p 67 (187)
T 3kcp_B 57 YDPKVLMAVDP 67 (187)
T ss_dssp CCTTTEEEECT
T ss_pred EChhHeeeccc
Confidence 34444444444
No 7
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=13.02 E-value=2.3e+02 Score=21.06 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=10.7
Q ss_pred CCcHHHHHHHHhHhhhhhhh
Q 003207 544 GGWLPLAFASVFLCVMYIWN 563 (839)
Q Consensus 544 GGW~pL~ia~v~~~iM~tW~ 563 (839)
|||..++.-++++++||..-
T Consensus 1 ~~~~~~l~~v~~~~ifYFl~ 20 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFMI 20 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 45555555555556665443
No 8
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=12.39 E-value=1.9e+03 Score=26.79 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=22.3
Q ss_pred CccchhhhhHHhHH---HHHHHhhcchhhHhhcC
Q 003207 361 SVKAIQIAFTLVVF---PCLLLAYMGQAAYLMKY 391 (839)
Q Consensus 361 g~~~Iqiaw~~~V~---PaLlL~Y~GQgA~Ll~~ 391 (839)
--.|+|+-|.-++. |++.|.|=---.-+|+.
T Consensus 811 pl~~~qiL~inl~~d~~palal~~e~~~~~~m~~ 844 (1034)
T 3ixz_A 811 PLGCITILFIELCTDIFPSVSLAYEKAESDIMHL 844 (1034)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhC
Confidence 45789999987664 99999985544455544
No 9
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=11.92 E-value=61 Score=24.39 Aligned_cols=19 Identities=21% Similarity=0.527 Sum_probs=15.2
Q ss_pred CccceehhHHHHHHHHHHh
Q 003207 126 TEIDVLGALSLVMYTITLI 144 (839)
Q Consensus 126 ~~~dvlGvLSLIfWtLtLi 144 (839)
-..+|+|+|=||.|.+-=.
T Consensus 11 iaA~IigiLHlilWildrL 29 (35)
T 2ljb_A 11 VAASIIGILHFIAWTIGHL 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 3468999999999997533
No 10
>3hbe_X Class IV chitinase CHIA4-PA2; endochitinase, family 19, conformational changes, chitin-binding, glycosidase, hydrolase; 1.55A {Picea abies} SCOP: d.2.1.0 PDB: 3hbd_A 3hbh_A
Probab=11.71 E-value=42 Score=34.21 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=0.0
Q ss_pred CCCccchhhhhHHhHHHHHHHhhcchhhH----hhcCCCccc-CcccccccCcchH
Q 003207 359 HFSVKAIQIAFTLVVFPCLLLAYMGQAAY----LMKYPDSAN-RIFYDSVPDSLFW 409 (839)
Q Consensus 359 HFg~~~Iqiaw~~~V~PaLlL~Y~GQgA~----Ll~~p~~~~-npFy~~iP~~~~w 409 (839)
++||.+||++|=. ||--=|.+ |++|||.+. ||-+.......||
T Consensus 97 Y~GRG~IQLTg~~--------NY~~~g~~lg~Dll~nPdlva~dp~~a~~sA~wfW 144 (204)
T 3hbe_X 97 YHGRGPLQLSWNY--------NYGAAGKSIGFDGLNNPEKVGQDSTISFKTAVWFW 144 (204)
T ss_dssp CCCBTTTTBCSHH--------HHHHHHHHHTSCTTTCGGGGGTCHHHHHHHHHHHH
T ss_pred ccCCCceecccHH--------HHHHHHHHhCCccccCHHHHhhCHHHHHHHHHhhh
Done!