Query 003207
Match_columns 839
No_of_seqs 250 out of 768
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 17:10:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003207.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003207hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 26.7 17 0.0012 33.7 3.1 119 375-506 12-132 (173)
2 d2h8pc1 f.14.1.1 (C:22-78) Pot 16.0 33 0.0024 26.4 2.1 41 374-416 14-54 (57)
3 d2e74h1 f.23.27.1 (H:3-29) Pet 10.6 59 0.0043 21.2 1.7 20 545-564 5-24 (27)
4 d2j5pa1 a.4.5.67 (A:1261-1329) 9.2 74 0.0054 25.3 2.3 14 202-215 35-48 (69)
5 d1iray2 b.1.1.4 (Y:102-204) Ty 7.5 92 0.0067 25.3 2.3 26 643-668 57-82 (103)
6 d2ve8a1 a.4.5.67 (A:745-811) D 6.9 1.2E+02 0.0086 23.9 2.5 14 202-215 32-45 (67)
7 d1f2qa2 b.1.1.4 (A:86-174) IgE 6.6 1.1E+02 0.0082 23.6 2.3 30 641-670 46-75 (89)
8 d1krha2 c.25.1.2 (A:206-338) B 5.6 2.1E+02 0.016 23.4 3.7 41 427-467 17-57 (133)
9 d1f97a1 b.1.1.1 (A:27-128) Jun 5.5 1.1E+02 0.0077 23.8 1.5 25 646-670 67-91 (102)
10 d1or7a2 a.177.1.1 (A:-1-111) S 5.2 1.8E+02 0.013 23.4 2.8 23 798-820 74-96 (113)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=26.70 E-value=17 Score=33.68 Aligned_cols=119 Identities=11% Similarity=0.110 Sum_probs=69.4
Q ss_pred HHHHHhhcch--hhHhhcCCCcccCcccccccCcchHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHcCCCCceeEEecC
Q 003207 375 PCLLLAYMGQ--AAYLMKYPDSANRIFYDSVPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPRLKIIHTS 452 (839)
Q Consensus 375 PaLlL~Y~GQ--gA~Ll~~p~~~~npFy~~iP~~~~wP~~vlAtlAtIIASQA~ISg~FSii~Qai~Lg~fPR~kIvhTS 452 (839)
|-|++|.+|+ +|+++.+=|+.-+.+ +-=..|.|+ ++-++--++||+.. ++-+++++|-+-+-. .-
T Consensus 12 pWL~i~l~~~~~~a~ii~~Fe~~l~~~---~~La~fiPl--i~~~gGN~G~Qs~t-----i~iR~La~g~i~~~~---~~ 78 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGFESVLEAV---TALAFYVPV--LLGTGGNTGNQSAT-----LIIRALATRDLDLRD---WR 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTTTT---TSCCCCSHH--HHHHHHHHHHHHHH-----HHHHHHHTTCSCSSS---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--HhcCCchHHHHHHH-----HHHHHHhcccccchh---HH
Confidence 4455555554 466666544433322 112356776 66788889999874 888999999543211 11
Q ss_pred CccCCceeechhHHHHHHHhheeeEEeCChhhhhhhhhchhhhHHHHHHHHHHH
Q 003207 453 RKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTI 506 (839)
Q Consensus 453 ~~~~GQIYIP~VNwlLmi~~i~vv~~F~~S~~l~~AYGiAV~~vM~iTT~L~~~ 506 (839)
+...-++.+-.+|-+.+...+.....++....++-+=|++...+|++.+++=++
T Consensus 79 ~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~ 132 (173)
T d2yvxa3 79 RVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAM 132 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123345667777776666555555555655556666666666666666655433
No 2
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=16.03 E-value=33 Score=26.43 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=26.9
Q ss_pred HHHHHHhhcchhhHhhcCCCcccCcccccccCcchHHHHHHHH
Q 003207 374 FPCLLLAYMGQAAYLMKYPDSANRIFYDSVPDSLFWPVFVLAA 416 (839)
Q Consensus 374 ~PaLlL~Y~GQgA~Ll~~p~~~~npFy~~iP~~~~wP~~vlAt 416 (839)
+-++++--++=+.|+.++... +.-|.++|+.+.|-.+-+.|
T Consensus 14 ~~~i~i~~~s~~~y~~E~~~~--~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 14 LLVIVLLAGSYLAVLAERGAP--GAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHTTST--TCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCC--Cccccccchhhhhheeeeec
Confidence 334444445666777776543 33489999999998775543
No 3
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.56 E-value=59 Score=21.20 Aligned_cols=20 Identities=25% Similarity=0.712 Sum_probs=14.6
Q ss_pred CcHHHHHHHHhHhhhhhhhh
Q 003207 545 GWLPLAFASVFLCVMYIWNY 564 (839)
Q Consensus 545 GW~pL~ia~v~~~iM~tW~~ 564 (839)
||+.|+.-..--+-|..|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888777766777777754
No 4
>d2j5pa1 a.4.5.67 (A:1261-1329) DNA translocase FtsK {Escherichia coli [TaxId: 562]}
Probab=9.25 E-value=74 Score=25.32 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHhhc
Q 003207 202 LERALQLKDILERT 215 (839)
Q Consensus 202 ~~~~~~ik~~le~~ 215 (839)
-.||.+|-+.||..
T Consensus 35 YnRAariid~LE~~ 48 (69)
T d2j5pa1 35 YNRAARIIEQMEAQ 48 (69)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHC
Confidence 35788899988864
No 5
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.52 E-value=92 Score=25.31 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=21.5
Q ss_pred CceEEEEEecCCCCcEEEEEEEEeec
Q 003207 643 EERFLFRRVGPKDYHMFRCVTRYGYK 668 (839)
Q Consensus 643 ~eR~~v~~~~~~~~~~~r~v~ryGy~ 668 (839)
+..+.+..+...+.|.|+|.|++.|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 45678888888888999999998775
No 6
>d2ve8a1 a.4.5.67 (A:745-811) DNA translocase FtsK {Pseudomonas aeruginosa [TaxId: 287]}
Probab=6.88 E-value=1.2e+02 Score=23.90 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHhhc
Q 003207 202 LERALQLKDILERT 215 (839)
Q Consensus 202 ~~~~~~ik~~le~~ 215 (839)
-.||.++-+.||..
T Consensus 32 YnRAariid~LE~~ 45 (67)
T d2ve8a1 32 YNRAARMIEAMEMA 45 (67)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHC
Confidence 35788899999864
No 7
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.63 E-value=1.1e+02 Score=23.65 Aligned_cols=30 Identities=10% Similarity=0.083 Sum_probs=23.7
Q ss_pred CCCceEEEEEecCCCCcEEEEEEEEeeccc
Q 003207 641 RLEERFLFRRVGPKDYHMFRCVTRYGYKDV 670 (839)
Q Consensus 641 ~~~eR~~v~~~~~~~~~~~r~v~ryGy~d~ 670 (839)
.....+.+..+...+-|.|+|.++.++.+.
T Consensus 46 ~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~ 75 (89)
T d1f2qa2 46 YENHNISITNATVEDSGTYYCTGKVWQLDY 75 (89)
T ss_dssp CCSSEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred cccceEEEeeeeeecCcEEEEEEEeCCCCe
Confidence 345678888888888899999999887544
No 8
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=5.56 E-value=2.1e+02 Score=23.38 Aligned_cols=41 Identities=7% Similarity=0.136 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHcCCCCceeEEecCCccCCceeechhHHH
Q 003207 427 ISATFSCIKQAMALGCFPRLKIIHTSRKRMGQIYIPVINWF 467 (839)
Q Consensus 427 ISg~FSii~Qai~Lg~fPR~kIvhTS~~~~GQIYIP~VNwl 467 (839)
|+-..|+++++.+.+.-+++.++|..+...--+|--++..+
T Consensus 17 ItP~~s~l~~~~~~~~~~~i~l~~~~r~~~d~~~~~el~~l 57 (133)
T d1krha2 17 IAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLDAL 57 (133)
T ss_dssp HHHHHHHHHHHHHHCCSSCEEEEEEESSGGGCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEeecchhHHHHHHHHHHH
No 9
>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.48 E-value=1.1e+02 Score=23.82 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=0.0
Q ss_pred EEEEEecCCCCcEEEEEEEEeeccc
Q 003207 646 FLFRRVGPKDYHMFRCVTRYGYKDV 670 (839)
Q Consensus 646 ~~v~~~~~~~~~~~r~v~ryGy~d~ 670 (839)
+.+..+...+.|.|+|.++..+...
T Consensus 67 L~I~~v~~~D~G~Y~C~a~n~~g~~ 91 (102)
T d1f97a1 67 ITFSSVTRKDNGEYTCMVSEEGGQN 91 (102)
T ss_dssp EEESCCCGGGCEEEEEEEEETTSSS
T ss_pred EEEeECCccCCEEEEEEEEECCCCE
No 10
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=5.24 E-value=1.8e+02 Score=23.36 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHhccccc
Q 003207 798 FFLKKLVINYFYAFLRRNCRAGA 820 (839)
Q Consensus 798 ~~~KKi~i~~~y~fLrrN~r~~~ 820 (839)
+++.++++|..+.++||+.|...
T Consensus 74 ~wl~~I~~n~~~d~~R~~~r~~~ 96 (113)
T d1or7a2 74 TWLYRIAVNTAKNYLVAQGRRPP 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCC
Done!